Query 002407
Match_columns 927
No_of_seqs 895 out of 5396
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 23:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0283 WD40 repeat-containing 100.0 1.5E-74 3.2E-79 661.5 45.1 594 298-927 106-712 (712)
2 KOG0271 Notchless-like WD40 re 100.0 3.8E-38 8.3E-43 331.4 29.8 293 446-778 105-444 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3.2E-37 6.9E-42 324.4 28.7 308 422-771 128-479 (480)
4 KOG0286 G-protein beta subunit 100.0 6.4E-35 1.4E-39 298.7 33.3 293 450-771 49-343 (343)
5 KOG0318 WD40 repeat stress pro 100.0 3.7E-32 8E-37 296.4 46.1 457 409-919 19-558 (603)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-35 1.1E-39 312.0 21.8 281 453-771 172-458 (459)
7 KOG0319 WD40-repeat-containing 100.0 4E-32 8.6E-37 306.5 34.1 445 412-920 65-618 (775)
8 KOG0291 WD40-repeat-containing 100.0 2.3E-30 5E-35 292.0 46.9 441 442-919 131-610 (893)
9 KOG0272 U4/U6 small nuclear ri 100.0 5.1E-33 1.1E-37 296.8 22.9 279 564-919 172-458 (459)
10 KOG0318 WD40 repeat stress pro 100.0 3.3E-30 7.2E-35 281.2 44.4 444 409-919 59-600 (603)
11 KOG0291 WD40-repeat-containing 100.0 5E-30 1.1E-34 289.3 46.2 436 423-920 69-549 (893)
12 KOG0315 G-protein beta subunit 100.0 5.4E-31 1.2E-35 264.4 31.4 287 418-782 7-297 (311)
13 KOG0279 G protein beta subunit 100.0 7.5E-31 1.6E-35 267.6 31.7 299 448-823 7-312 (315)
14 KOG0306 WD40-repeat-containing 100.0 5.7E-29 1.2E-33 280.7 41.1 432 418-922 74-665 (888)
15 KOG0286 G-protein beta subunit 100.0 6.1E-30 1.3E-34 262.2 30.2 286 558-919 46-343 (343)
16 KOG0279 G protein beta subunit 100.0 9.2E-30 2E-34 259.7 30.7 280 420-730 27-312 (315)
17 KOG0319 WD40-repeat-containing 100.0 5.2E-30 1.1E-34 289.4 30.5 421 454-920 60-576 (775)
18 KOG0265 U5 snRNP-specific prot 100.0 3.3E-29 7.2E-34 257.9 27.0 273 450-800 41-323 (338)
19 KOG0645 WD40 repeat protein [G 100.0 1.1E-28 2.4E-33 250.8 30.5 289 446-773 4-311 (312)
20 KOG0282 mRNA splicing factor [ 100.0 2.2E-30 4.7E-35 281.0 18.5 288 448-812 206-503 (503)
21 cd00200 WD40 WD40 domain, foun 100.0 5.3E-28 1.2E-32 258.0 35.9 283 450-771 3-289 (289)
22 KOG0273 Beta-transducin family 100.0 2.5E-28 5.5E-33 263.8 31.7 292 455-780 177-489 (524)
23 KOG0285 Pleiotropic regulator 100.0 3.2E-29 6.9E-34 262.2 23.7 284 450-774 145-440 (460)
24 KOG0263 Transcription initiati 100.0 3.9E-29 8.5E-34 285.6 24.9 273 453-776 375-652 (707)
25 KOG0306 WD40-repeat-containing 100.0 3.6E-27 7.9E-32 266.2 39.1 422 425-919 37-620 (888)
26 KOG0315 G-protein beta subunit 100.0 1.6E-28 3.4E-33 246.7 24.4 267 579-919 11-286 (311)
27 KOG0284 Polyadenylation factor 100.0 1.8E-29 3.9E-34 268.5 17.9 281 456-774 96-381 (464)
28 KOG0263 Transcription initiati 100.0 1.5E-28 3.2E-33 280.9 26.5 231 422-732 391-650 (707)
29 KOG0276 Vesicle coat complex C 100.0 9.7E-28 2.1E-32 265.8 31.8 289 450-777 7-302 (794)
30 KOG0296 Angio-associated migra 100.0 2.4E-27 5.3E-32 249.6 32.4 314 414-773 69-398 (399)
31 PLN00181 protein SPA1-RELATED; 100.0 4E-27 8.6E-32 293.6 40.1 315 430-772 457-792 (793)
32 KOG0295 WD40 repeat-containing 100.0 4.5E-28 9.7E-33 254.9 24.7 285 449-772 101-405 (406)
33 KOG0316 Conserved WD40 repeat- 100.0 9.5E-28 2.1E-32 239.3 25.1 250 449-782 10-266 (307)
34 KOG0293 WD40 repeat-containing 100.0 5.7E-28 1.2E-32 256.8 23.2 291 447-815 215-514 (519)
35 KOG0266 WD40 repeat-containing 100.0 6.6E-27 1.4E-31 272.9 32.7 284 450-773 152-454 (456)
36 KOG0273 Beta-transducin family 100.0 1.2E-26 2.6E-31 250.9 31.1 309 423-773 193-523 (524)
37 KOG0281 Beta-TrCP (transducin 100.0 4.3E-28 9.4E-33 252.5 15.6 268 414-777 200-481 (499)
38 KOG0292 Vesicle coat complex C 100.0 6.3E-26 1.4E-30 259.1 34.0 275 418-776 18-324 (1202)
39 KOG0282 mRNA splicing factor [ 100.0 1.2E-27 2.5E-32 259.8 18.8 291 556-919 203-503 (503)
40 KOG0645 WD40 repeat protein [G 99.9 2E-25 4.4E-30 227.2 29.2 276 422-730 28-310 (312)
41 KOG0296 Angio-associated migra 99.9 2.4E-25 5.2E-30 234.7 30.7 309 450-789 58-372 (399)
42 KOG0293 WD40 repeat-containing 99.9 2.3E-26 4.9E-31 244.7 23.0 290 388-775 218-515 (519)
43 KOG0275 Conserved WD40 repeat- 99.9 4.9E-27 1.1E-31 242.4 16.9 290 453-811 210-506 (508)
44 KOG0284 Polyadenylation factor 99.9 5.1E-27 1.1E-31 249.9 16.2 265 424-730 111-379 (464)
45 KOG0285 Pleiotropic regulator 99.9 1.1E-25 2.4E-30 235.9 25.3 302 553-876 137-441 (460)
46 KOG0265 U5 snRNP-specific prot 99.9 3.3E-25 7.1E-30 228.5 26.9 271 422-772 60-337 (338)
47 cd00200 WD40 WD40 domain, foun 99.9 3.1E-24 6.7E-29 228.9 35.6 265 421-729 21-289 (289)
48 KOG1407 WD40 repeat protein [F 99.9 3E-25 6.4E-30 224.8 25.8 277 450-805 14-292 (313)
49 PLN00181 protein SPA1-RELATED; 99.9 1.8E-24 3.9E-29 269.8 37.7 270 477-774 457-739 (793)
50 KOG0313 Microtubule binding pr 99.9 2.8E-25 6.1E-30 235.0 25.3 277 418-774 112-419 (423)
51 KOG0643 Translation initiation 99.9 1.4E-24 3E-29 220.5 28.2 232 452-763 6-251 (327)
52 KOG0295 WD40 repeat-containing 99.9 2.4E-25 5.1E-30 234.5 23.2 265 423-729 122-404 (406)
53 KOG0772 Uncharacterized conser 99.9 2.5E-25 5.5E-30 242.3 23.5 307 450-774 161-488 (641)
54 KOG0266 WD40 repeat-containing 99.9 2.5E-24 5.4E-29 251.3 33.0 287 560-921 151-454 (456)
55 KOG0278 Serine/threonine kinas 99.9 4.4E-25 9.5E-30 221.8 19.0 287 450-778 8-302 (334)
56 KOG1446 Histone H3 (Lys4) meth 99.9 3.9E-23 8.4E-28 215.5 32.5 290 446-812 4-301 (311)
57 KOG0276 Vesicle coat complex C 99.9 6.4E-23 1.4E-27 227.8 35.6 339 420-812 24-378 (794)
58 KOG0281 Beta-TrCP (transducin 99.9 6.7E-25 1.4E-29 228.8 17.3 270 455-817 196-480 (499)
59 KOG0278 Serine/threonine kinas 99.9 1.3E-24 2.9E-29 218.4 18.2 270 405-730 24-296 (334)
60 KOG0292 Vesicle coat complex C 99.9 6.8E-24 1.5E-28 242.7 26.0 257 453-780 6-287 (1202)
61 PTZ00421 coronin; Provisional 99.9 1.3E-22 2.8E-27 236.8 36.0 252 450-774 69-332 (493)
62 KOG0288 WD40 repeat protein Ti 99.9 1.3E-24 2.8E-29 232.0 17.1 284 451-771 170-459 (459)
63 KOG0277 Peroxisomal targeting 99.9 5.8E-24 1.3E-28 214.6 20.9 262 430-772 37-308 (311)
64 KOG0274 Cdc4 and related F-box 99.9 3.8E-23 8.3E-28 241.7 30.7 269 420-781 217-490 (537)
65 KOG0316 Conserved WD40 repeat- 99.9 5.7E-23 1.2E-27 205.3 25.9 263 422-773 30-299 (307)
66 KOG0275 Conserved WD40 repeat- 99.9 4E-24 8.7E-29 221.0 17.8 271 422-771 226-507 (508)
67 KOG0310 Conserved WD40 repeat- 99.9 6.1E-23 1.3E-27 223.7 27.7 286 455-780 25-316 (487)
68 PTZ00421 coronin; Provisional 99.9 1.9E-22 4.1E-27 235.4 33.8 257 455-777 19-294 (493)
69 PTZ00420 coronin; Provisional 99.9 2.9E-22 6.2E-27 235.1 35.4 254 427-755 50-318 (568)
70 KOG0973 Histone transcription 99.9 5.4E-23 1.2E-27 242.7 28.5 307 454-775 11-357 (942)
71 KOG0294 WD40 repeat-containing 99.9 1.3E-22 2.9E-27 210.5 27.1 241 451-776 38-284 (362)
72 KOG0299 U3 snoRNP-associated p 99.9 6.3E-23 1.4E-27 222.1 25.3 296 450-771 136-454 (479)
73 KOG1408 WD40 repeat protein [F 99.9 7.5E-22 1.6E-26 221.3 33.3 460 421-925 90-714 (1080)
74 KOG0640 mRNA cleavage stimulat 99.9 4.4E-23 9.5E-28 212.8 21.5 214 559-780 104-342 (430)
75 KOG0305 Anaphase promoting com 99.9 1.4E-22 3E-27 229.1 27.6 261 429-775 195-463 (484)
76 KOG0268 Sof1-like rRNA process 99.9 6.1E-24 1.3E-28 223.5 15.2 288 451-780 61-352 (433)
77 KOG0643 Translation initiation 99.9 2.1E-22 4.6E-27 204.7 24.7 264 422-774 23-318 (327)
78 KOG2096 WD40 repeat protein [G 99.9 2.5E-22 5.5E-27 208.1 25.2 325 432-774 62-403 (420)
79 KOG1036 Mitotic spindle checkp 99.9 7.2E-22 1.6E-26 205.0 27.3 269 455-804 12-293 (323)
80 PTZ00420 coronin; Provisional 99.9 2.1E-21 4.6E-26 227.8 34.8 206 559-775 66-295 (568)
81 KOG0313 Microtubule binding pr 99.9 4.9E-22 1.1E-26 210.5 25.9 273 454-822 103-416 (423)
82 KOG0641 WD40 repeat protein [G 99.9 7.2E-21 1.6E-25 188.7 32.4 251 447-773 80-349 (350)
83 KOG1063 RNA polymerase II elon 99.9 3.7E-21 8E-26 216.7 32.6 436 420-921 158-699 (764)
84 KOG0308 Conserved WD40 repeat- 99.9 1.7E-22 3.7E-27 225.9 21.8 205 560-775 66-287 (735)
85 KOG1407 WD40 repeat protein [F 99.9 3E-22 6.4E-27 203.1 21.0 203 561-774 14-220 (313)
86 KOG0647 mRNA export protein (c 99.9 9.9E-22 2.2E-26 203.0 24.9 277 454-761 25-311 (347)
87 KOG0640 mRNA cleavage stimulat 99.9 4E-22 8.6E-27 205.8 21.5 302 447-773 103-426 (430)
88 KOG0268 Sof1-like rRNA process 99.9 3.5E-23 7.6E-28 217.8 13.8 285 558-921 57-345 (433)
89 KOG0289 mRNA splicing factor [ 99.9 1.6E-21 3.5E-26 209.4 26.4 268 421-772 231-505 (506)
90 KOG1539 WD repeat protein [Gen 99.9 9.7E-21 2.1E-25 217.0 34.1 434 424-922 175-649 (910)
91 KOG0274 Cdc4 and related F-box 99.9 1.9E-21 4E-26 227.6 28.9 272 454-814 206-482 (537)
92 KOG0772 Uncharacterized conser 99.9 7.9E-22 1.7E-26 215.2 23.2 299 557-919 157-485 (641)
93 KOG2048 WD40 repeat protein [G 99.9 1.1E-19 2.3E-24 205.0 40.2 459 415-922 31-506 (691)
94 KOG1063 RNA polymerase II elon 99.9 1.9E-20 4E-25 211.1 32.4 325 421-775 206-650 (764)
95 KOG0264 Nucleosome remodeling 99.9 1.9E-21 4E-26 211.1 23.5 255 453-774 121-405 (422)
96 KOG0301 Phospholipase A2-activ 99.9 3.7E-21 7.9E-26 216.9 25.7 278 449-774 7-289 (745)
97 KOG0310 Conserved WD40 repeat- 99.9 4.6E-21 1E-25 209.2 25.6 255 429-729 46-307 (487)
98 KOG2106 Uncharacterized conser 99.9 1.6E-19 3.5E-24 196.9 37.2 420 432-920 135-580 (626)
99 KOG1332 Vesicle coat complex C 99.9 1.2E-21 2.7E-26 196.9 18.5 249 453-774 8-287 (299)
100 KOG0300 WD40 repeat-containing 99.9 4.3E-21 9.4E-26 198.3 22.2 311 448-775 140-478 (481)
101 KOG0283 WD40 repeat-containing 99.9 3.2E-21 7E-26 222.9 23.7 243 561-823 260-575 (712)
102 KOG0301 Phospholipase A2-activ 99.9 8E-21 1.7E-25 214.2 25.4 279 385-729 5-286 (745)
103 KOG2106 Uncharacterized conser 99.9 1.1E-19 2.4E-24 198.2 33.0 317 412-775 247-583 (626)
104 KOG0639 Transducin-like enhanc 99.9 2.5E-21 5.4E-26 210.3 20.0 283 453-772 416-703 (705)
105 KOG0289 mRNA splicing factor [ 99.9 1.5E-20 3.3E-25 201.9 25.2 238 456-774 219-463 (506)
106 KOG0277 Peroxisomal targeting 99.9 3.2E-21 7E-26 194.9 18.7 239 411-730 63-308 (311)
107 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-19 4.1E-24 196.9 34.4 277 423-779 3-285 (300)
108 KOG0288 WD40 repeat protein Ti 99.9 3.2E-21 6.9E-26 206.3 19.3 267 421-728 187-458 (459)
109 KOG1539 WD repeat protein [Gen 99.9 7.5E-20 1.6E-24 209.8 29.9 346 413-775 249-650 (910)
110 KOG0305 Anaphase promoting com 99.9 2.9E-20 6.3E-25 210.4 24.9 274 571-923 181-463 (484)
111 KOG1408 WD40 repeat protein [F 99.9 8.9E-20 1.9E-24 204.8 28.3 321 420-774 335-714 (1080)
112 KOG1273 WD40 repeat protein [G 99.9 3.6E-20 7.7E-25 192.1 23.0 278 459-814 26-322 (405)
113 KOG1036 Mitotic spindle checkp 99.9 9.3E-20 2E-24 189.4 26.0 264 419-763 23-294 (323)
114 KOG0308 Conserved WD40 repeat- 99.9 8.7E-21 1.9E-25 212.3 18.8 278 421-776 37-330 (735)
115 KOG2048 WD40 repeat protein [G 99.9 4.3E-18 9.3E-23 192.1 39.3 425 445-920 14-458 (691)
116 KOG0302 Ribosome Assembly prot 99.9 4.1E-20 9E-25 195.7 21.5 259 453-771 148-436 (440)
117 KOG0269 WD40 repeat-containing 99.9 9.6E-21 2.1E-25 215.7 17.9 248 458-779 89-346 (839)
118 KOG0264 Nucleosome remodeling 99.8 5.2E-20 1.1E-24 199.9 21.8 250 421-732 137-405 (422)
119 KOG0650 WD40 repeat nucleolar 99.8 7.4E-20 1.6E-24 203.0 23.3 305 449-770 393-732 (733)
120 KOG0299 U3 snoRNP-associated p 99.8 2E-19 4.4E-24 195.1 23.2 271 423-729 156-454 (479)
121 KOG1446 Histone H3 (Lys4) meth 99.8 6.2E-18 1.4E-22 176.8 33.4 276 416-776 21-306 (311)
122 KOG1274 WD40 repeat protein [G 99.8 9.8E-19 2.1E-23 202.9 29.8 251 453-775 10-264 (933)
123 KOG0300 WD40 repeat-containing 99.8 2.1E-19 4.6E-24 185.9 20.4 278 418-730 157-475 (481)
124 KOG0294 WD40 repeat-containing 99.8 8.1E-19 1.8E-23 182.5 24.8 234 413-732 45-282 (362)
125 KOG2055 WD40 repeat protein [G 99.8 5.9E-19 1.3E-23 191.2 22.5 278 567-919 213-510 (514)
126 KOG0646 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 189.4 23.5 204 566-781 80-315 (476)
127 KOG0973 Histone transcription 99.8 2.4E-18 5.1E-23 203.8 27.6 246 451-729 64-353 (942)
128 KOG0646 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 191.0 21.4 243 412-729 84-348 (476)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.3E-17 2.7E-22 182.5 31.2 274 579-922 2-280 (300)
130 KOG2055 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 186.3 24.3 287 456-773 213-512 (514)
131 KOG0270 WD40 repeat-containing 99.8 4.1E-19 8.9E-24 192.0 17.9 207 563-778 239-454 (463)
132 KOG2445 Nuclear pore complex c 99.8 9.9E-18 2.1E-22 173.9 27.1 249 453-774 10-319 (361)
133 KOG0647 mRNA export protein (c 99.8 7.4E-18 1.6E-22 174.5 25.6 267 501-798 25-306 (347)
134 KOG0641 WD40 repeat protein [G 99.8 6.2E-17 1.3E-21 160.9 31.1 264 454-775 30-305 (350)
135 KOG0267 Microtubule severing p 99.8 5.5E-20 1.2E-24 208.0 10.7 236 450-765 22-260 (825)
136 KOG2096 WD40 repeat protein [G 99.8 6.1E-18 1.3E-22 175.7 23.7 276 560-859 79-392 (420)
137 KOG4283 Transcription-coupled 99.8 4E-18 8.8E-23 175.4 22.0 251 564-823 40-333 (397)
138 KOG0321 WD40 repeat-containing 99.8 2.8E-18 6E-23 192.1 21.7 285 417-776 60-394 (720)
139 KOG1332 Vesicle coat complex C 99.8 2.4E-18 5.2E-23 173.4 18.9 231 423-729 25-284 (299)
140 KOG4283 Transcription-coupled 99.8 8E-18 1.7E-22 173.2 23.1 290 453-772 40-364 (397)
141 KOG0321 WD40 repeat-containing 99.8 4.9E-18 1.1E-22 190.2 23.3 255 560-816 93-393 (720)
142 KOG0639 Transducin-like enhanc 99.8 3.9E-18 8.5E-23 185.6 20.4 282 409-729 419-702 (705)
143 KOG4328 WD40 protein [Function 99.8 1.5E-17 3.2E-22 180.4 22.6 286 445-802 175-481 (498)
144 KOG0269 WD40 repeat-containing 99.8 1E-17 2.3E-22 191.2 22.2 200 570-778 90-301 (839)
145 KOG0267 Microtubule severing p 99.8 7.2E-19 1.6E-23 199.0 10.5 214 422-720 41-257 (825)
146 KOG0302 Ribosome Assembly prot 99.8 1.7E-17 3.7E-22 176.1 18.0 237 421-724 165-432 (440)
147 KOG1274 WD40 repeat protein [G 99.8 2.7E-16 6E-21 182.8 28.8 266 416-770 20-297 (933)
148 KOG4328 WD40 protein [Function 99.8 5.7E-17 1.2E-21 175.9 21.6 207 559-773 178-399 (498)
149 KOG0303 Actin-binding protein 99.7 5.9E-17 1.3E-21 172.8 20.2 252 451-774 76-338 (472)
150 COG2319 FOG: WD40 repeat [Gene 99.7 6E-14 1.3E-18 157.0 45.7 367 451-875 60-443 (466)
151 KOG4378 Nuclear protein COP1 [ 99.7 8.8E-17 1.9E-21 175.1 21.1 270 478-780 12-287 (673)
152 KOG4227 WD40 repeat protein [G 99.7 1.1E-16 2.4E-21 169.7 20.7 264 445-776 45-325 (609)
153 KOG1034 Transcriptional repres 99.7 5.1E-17 1.1E-21 169.9 17.8 279 451-778 33-342 (385)
154 KOG1445 Tumor-specific antigen 99.7 8.1E-16 1.8E-20 171.3 27.9 127 651-779 629-756 (1012)
155 KOG0270 WD40 repeat-containing 99.7 1.1E-16 2.3E-21 173.5 20.0 234 421-732 192-450 (463)
156 KOG1273 WD40 repeat protein [G 99.7 3.9E-16 8.4E-21 162.3 22.6 276 421-775 35-324 (405)
157 KOG2445 Nuclear pore complex c 99.7 1.1E-15 2.4E-20 158.8 25.3 211 564-775 10-258 (361)
158 KOG1188 WD40 repeat protein [G 99.7 1.8E-16 4E-21 166.8 19.0 279 422-774 41-347 (376)
159 KOG4378 Nuclear protein COP1 [ 99.7 1.1E-16 2.3E-21 174.5 17.3 249 425-711 51-304 (673)
160 KOG1963 WD40 repeat protein [G 99.7 8.1E-15 1.8E-19 170.7 33.8 322 427-778 33-380 (792)
161 KOG0650 WD40 repeat nucleolar 99.7 9.1E-16 2E-20 170.8 24.4 299 555-871 388-732 (733)
162 KOG1009 Chromatin assembly com 99.7 9.4E-16 2E-20 164.6 23.3 308 456-778 13-377 (434)
163 KOG2919 Guanine nucleotide-bin 99.7 1.2E-15 2.5E-20 159.4 22.3 202 568-781 105-336 (406)
164 KOG0307 Vesicle coat complex C 99.7 8E-17 1.7E-21 191.6 14.4 293 461-777 11-331 (1049)
165 COG2319 FOG: WD40 repeat [Gene 99.7 8.7E-13 1.9E-17 147.6 45.0 318 420-781 76-408 (466)
166 KOG0642 Cell-cycle nuclear pro 99.7 2.2E-16 4.8E-21 175.4 15.1 260 451-775 289-563 (577)
167 KOG1538 Uncharacterized conser 99.7 4.9E-15 1.1E-19 165.9 23.1 272 458-774 14-294 (1081)
168 KOG0307 Vesicle coat complex C 99.7 5.1E-16 1.1E-20 184.8 15.2 233 422-730 81-326 (1049)
169 KOG0303 Actin-binding protein 99.7 4.1E-15 8.9E-20 158.8 20.3 204 562-776 76-297 (472)
170 PRK11028 6-phosphogluconolacto 99.7 1.7E-13 3.7E-18 153.8 34.0 277 425-774 6-305 (330)
171 KOG1188 WD40 repeat protein [G 99.6 1E-14 2.2E-19 153.7 20.1 191 579-777 41-246 (376)
172 KOG1034 Transcriptional repres 99.6 3.1E-15 6.8E-20 156.7 14.6 231 420-730 104-382 (385)
173 KOG1587 Cytoplasmic dynein int 99.6 5.6E-14 1.2E-18 163.8 25.8 266 432-774 223-517 (555)
174 KOG1538 Uncharacterized conser 99.6 3.5E-14 7.7E-19 159.1 22.8 251 431-729 33-291 (1081)
175 KOG0644 Uncharacterized conser 99.6 1.2E-15 2.6E-20 174.9 11.4 287 445-778 179-473 (1113)
176 KOG0642 Cell-cycle nuclear pro 99.6 6.9E-15 1.5E-19 163.7 17.0 245 418-732 303-562 (577)
177 KOG1240 Protein kinase contain 99.6 1.4E-13 3.1E-18 164.1 28.7 258 450-777 1042-1338(1431)
178 KOG1334 WD40 repeat protein [G 99.6 8.3E-15 1.8E-19 160.2 13.8 305 449-778 135-471 (559)
179 KOG4227 WD40 repeat protein [G 99.6 6.9E-14 1.5E-18 148.7 20.2 209 562-777 51-278 (609)
180 KOG1517 Guanine nucleotide bin 99.6 2.5E-13 5.5E-18 159.6 25.2 305 454-776 1062-1384(1387)
181 KOG1963 WD40 repeat protein [G 99.6 7.4E-13 1.6E-17 154.6 29.0 281 429-778 179-492 (792)
182 KOG0290 Conserved WD40 repeat- 99.6 2.1E-13 4.5E-18 141.0 21.6 246 453-769 93-361 (364)
183 PRK11028 6-phosphogluconolacto 99.6 1.1E-12 2.4E-17 147.2 29.0 279 581-920 5-303 (330)
184 KOG1310 WD40 repeat protein [G 99.6 2.1E-14 4.7E-19 158.3 14.0 244 444-778 38-308 (758)
185 KOG1445 Tumor-specific antigen 99.6 7.1E-14 1.5E-18 156.0 18.1 255 428-755 600-871 (1012)
186 KOG0322 G-protein beta subunit 99.6 4.9E-14 1.1E-18 143.9 15.3 281 451-772 9-322 (323)
187 KOG0649 WD40 repeat protein [G 99.6 1.7E-12 3.6E-17 131.3 25.3 280 414-770 15-313 (325)
188 KOG2919 Guanine nucleotide-bin 99.5 1.2E-12 2.7E-17 137.0 23.1 205 570-778 52-286 (406)
189 KOG4497 Uncharacterized conser 99.5 6.1E-13 1.3E-17 139.4 19.7 316 569-922 50-392 (447)
190 KOG1007 WD repeat protein TSSC 99.5 4.5E-13 9.8E-18 138.3 18.2 266 448-730 55-360 (370)
191 KOG2110 Uncharacterized conser 99.5 2.8E-11 6.1E-16 129.3 31.6 279 456-775 5-332 (391)
192 KOG1524 WD40 repeat-containing 99.5 5.4E-13 1.2E-17 147.1 18.5 188 555-769 92-282 (737)
193 KOG0322 G-protein beta subunit 99.5 3.2E-13 7E-18 138.0 15.2 292 558-921 5-323 (323)
194 KOG0771 Prolactin regulatory e 99.5 2.8E-13 6.2E-18 146.8 15.7 190 460-729 148-352 (398)
195 KOG1009 Chromatin assembly com 99.5 2E-12 4.3E-17 139.3 21.8 152 567-729 13-193 (434)
196 KOG0649 WD40 repeat protein [G 99.5 1.6E-11 3.4E-16 124.3 23.8 247 457-774 11-275 (325)
197 KOG2321 WD40 repeat protein [G 99.5 6.7E-12 1.4E-16 139.9 22.8 286 449-775 45-345 (703)
198 KOG1523 Actin-related protein 99.4 8.3E-12 1.8E-16 131.1 21.5 248 455-771 9-276 (361)
199 KOG2139 WD40 repeat protein [G 99.4 3.3E-11 7.1E-16 128.2 25.9 285 424-773 113-431 (445)
200 PRK01742 tolB translocation pr 99.4 9.6E-12 2.1E-16 144.8 24.2 230 430-754 183-426 (429)
201 KOG1007 WD repeat protein TSSC 99.4 5.1E-12 1.1E-16 130.7 18.7 203 454-679 121-361 (370)
202 KOG1524 WD40 repeat-containing 99.4 1.8E-12 3.8E-17 143.1 15.9 205 423-675 77-282 (737)
203 KOG1587 Cytoplasmic dynein int 99.4 2.8E-11 6E-16 141.5 26.9 270 588-919 222-514 (555)
204 KOG0771 Prolactin regulatory e 99.4 1.2E-11 2.6E-16 134.3 21.1 198 571-775 148-356 (398)
205 KOG1523 Actin-related protein 99.4 2.3E-11 4.9E-16 127.8 22.3 206 562-776 5-239 (361)
206 KOG2110 Uncharacterized conser 99.4 1.1E-10 2.4E-15 124.9 27.3 193 569-776 48-251 (391)
207 KOG1517 Guanine nucleotide bin 99.4 3.2E-11 6.9E-16 142.3 24.3 288 568-875 1065-1382(1387)
208 PRK01742 tolB translocation pr 99.4 2.4E-11 5.1E-16 141.5 23.5 206 551-773 187-401 (429)
209 KOG1334 WD40 repeat protein [G 99.4 3.9E-12 8.5E-17 139.6 14.7 309 558-920 133-465 (559)
210 KOG1272 WD40-repeat-containing 99.4 2.2E-12 4.8E-17 140.7 10.9 264 458-766 131-402 (545)
211 KOG0644 Uncharacterized conser 99.4 2E-12 4.3E-17 148.9 10.4 269 499-812 186-466 (1113)
212 KOG0290 Conserved WD40 repeat- 99.3 3.4E-11 7.3E-16 124.8 17.9 200 453-722 147-357 (364)
213 PRK03629 tolB translocation pr 99.3 4E-10 8.6E-15 131.2 29.1 232 431-753 179-427 (429)
214 KOG2394 WD40 protein DMR-N9 [G 99.3 1.3E-11 2.8E-16 136.9 15.5 187 580-776 187-455 (636)
215 PRK05137 tolB translocation pr 99.3 3.5E-10 7.7E-15 132.0 27.9 213 431-731 182-412 (435)
216 KOG2139 WD40 repeat protein [G 99.3 3E-10 6.4E-15 121.0 24.2 198 567-775 140-385 (445)
217 KOG1272 WD40-repeat-containing 99.3 3.9E-12 8.5E-17 138.8 10.1 229 570-813 132-361 (545)
218 KOG4497 Uncharacterized conser 99.3 1.5E-10 3.2E-15 121.7 21.0 293 424-767 64-426 (447)
219 PF02239 Cytochrom_D1: Cytochr 99.3 1.5E-09 3.3E-14 123.2 31.2 329 581-923 9-349 (369)
220 KOG1310 WD40 repeat protein [G 99.3 1.6E-11 3.6E-16 135.9 13.8 179 559-737 42-237 (758)
221 KOG2394 WD40 protein DMR-N9 [G 99.3 1.1E-10 2.5E-15 129.5 20.1 134 567-710 219-384 (636)
222 PRK03629 tolB translocation pr 99.3 4.2E-10 9.1E-15 131.0 26.0 210 551-774 182-407 (429)
223 PRK04922 tolB translocation pr 99.3 5.8E-10 1.3E-14 130.1 26.7 232 432-753 185-432 (433)
224 KOG3881 Uncharacterized conser 99.3 2.2E-10 4.8E-15 123.3 20.7 202 566-778 104-325 (412)
225 PRK05137 tolB translocation pr 99.3 5.9E-10 1.3E-14 130.1 26.2 209 552-775 186-414 (435)
226 KOG2111 Uncharacterized conser 99.3 2.3E-09 5E-14 113.0 25.3 178 588-777 75-260 (346)
227 PRK04922 tolB translocation pr 99.2 1.3E-09 2.8E-14 127.2 25.7 210 552-774 188-412 (433)
228 PRK02889 tolB translocation pr 99.2 2.8E-09 6E-14 124.1 27.9 196 452-729 191-401 (427)
229 PF02239 Cytochrom_D1: Cytochr 99.2 8E-09 1.7E-13 117.4 29.7 310 425-781 10-355 (369)
230 KOG1240 Protein kinase contain 99.2 1.6E-09 3.5E-14 130.2 23.2 224 593-816 1034-1275(1431)
231 PF10282 Lactonase: Lactonase, 99.2 1.3E-07 2.8E-12 107.0 37.5 204 569-774 88-323 (345)
232 PRK02889 tolB translocation pr 99.2 5.6E-09 1.2E-13 121.6 26.5 207 552-772 180-402 (427)
233 PF08662 eIF2A: Eukaryotic tra 99.2 3E-09 6.5E-14 110.1 21.1 116 566-686 58-185 (194)
234 KOG0974 WD-repeat protein WDR6 99.2 2.3E-08 5.1E-13 119.3 30.9 142 422-639 146-289 (967)
235 KOG2315 Predicted translation 99.2 1.3E-08 2.7E-13 114.5 26.6 318 568-926 35-395 (566)
236 TIGR02800 propeller_TolB tol-p 99.1 7.3E-09 1.6E-13 120.1 25.4 205 554-772 176-396 (417)
237 TIGR02800 propeller_TolB tol-p 99.1 1E-08 2.2E-13 118.9 26.6 190 451-722 184-386 (417)
238 KOG3881 Uncharacterized conser 99.1 5.8E-09 1.2E-13 112.6 22.0 153 570-732 151-321 (412)
239 KOG2315 Predicted translation 99.1 4.4E-08 9.5E-13 110.2 29.7 274 458-775 75-392 (566)
240 KOG1354 Serine/threonine prote 99.1 1.4E-09 3.1E-14 115.2 16.2 264 455-776 24-362 (433)
241 PF08662 eIF2A: Eukaryotic tra 99.1 7E-09 1.5E-13 107.4 20.5 148 611-774 9-180 (194)
242 KOG1409 Uncharacterized conser 99.1 2.9E-09 6.3E-14 113.1 17.2 247 449-729 17-268 (404)
243 PRK00178 tolB translocation pr 99.1 2.8E-08 6.1E-13 115.9 26.9 209 553-774 184-407 (430)
244 PRK00178 tolB translocation pr 99.1 4.7E-08 1E-12 114.1 28.7 198 451-730 193-405 (430)
245 KOG2111 Uncharacterized conser 99.1 2.8E-07 6.2E-12 97.5 31.0 153 566-730 93-255 (346)
246 KOG2321 WD40 repeat protein [G 99.1 1.2E-08 2.5E-13 114.5 21.7 269 411-729 54-341 (703)
247 PRK04792 tolB translocation pr 99.1 4.8E-08 1E-12 114.3 27.7 168 572-753 266-446 (448)
248 KOG1064 RAVE (regulator of V-A 99.1 7.4E-10 1.6E-14 136.6 12.2 230 452-724 2204-2439(2439)
249 KOG1354 Serine/threonine prote 99.1 3.2E-08 6.9E-13 105.2 22.8 275 420-730 36-358 (433)
250 PRK04792 tolB translocation pr 99.0 4.1E-08 8.8E-13 114.9 25.2 207 554-774 204-426 (448)
251 KOG4547 WD40 repeat-containing 99.0 4.3E-08 9.4E-13 111.1 23.7 139 579-729 71-218 (541)
252 KOG2314 Translation initiation 99.0 9.4E-08 2E-12 107.0 24.5 287 454-774 248-574 (698)
253 KOG2041 WD40 repeat protein [G 99.0 3.7E-08 7.9E-13 112.4 20.9 252 455-765 13-280 (1189)
254 KOG0974 WD-repeat protein WDR6 99.0 7.2E-09 1.6E-13 123.6 16.0 198 457-680 88-289 (967)
255 KOG0280 Uncharacterized conser 99.0 3E-08 6.5E-13 103.6 18.4 273 429-728 44-330 (339)
256 COG5354 Uncharacterized protei 98.9 2.4E-07 5.1E-12 103.3 25.5 319 566-925 31-399 (561)
257 COG2706 3-carboxymuconate cycl 98.9 3.2E-06 7E-11 91.5 32.7 274 431-775 16-323 (346)
258 PF10282 Lactonase: Lactonase, 98.8 3.3E-06 7.2E-11 95.6 30.6 283 581-872 2-320 (345)
259 KOG1409 Uncharacterized conser 98.8 2.1E-07 4.7E-12 99.1 19.2 279 422-734 81-397 (404)
260 PRK01029 tolB translocation pr 98.8 6.5E-07 1.4E-11 104.2 25.3 211 554-776 171-406 (428)
261 COG5354 Uncharacterized protei 98.8 2.1E-06 4.6E-11 95.8 27.6 279 457-775 72-397 (561)
262 PF04762 IKI3: IKI3 family; I 98.8 3.3E-06 7.2E-11 106.2 31.4 305 455-775 74-458 (928)
263 COG2706 3-carboxymuconate cycl 98.8 5.9E-06 1.3E-10 89.5 28.7 187 587-775 15-223 (346)
264 KOG2314 Translation initiation 98.8 2.2E-06 4.9E-11 96.3 26.1 175 588-774 282-479 (698)
265 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.8E-05 3.8E-10 88.7 33.6 277 431-781 27-338 (352)
266 KOG2041 WD40 repeat protein [G 98.8 6.2E-07 1.3E-11 102.7 21.7 272 420-729 25-335 (1189)
267 KOG0280 Uncharacterized conser 98.8 1.2E-06 2.6E-11 91.9 22.1 197 570-776 124-336 (339)
268 KOG4190 Uncharacterized conser 98.8 2.5E-08 5.5E-13 110.7 9.9 247 449-772 728-987 (1034)
269 KOG1064 RAVE (regulator of V-A 98.7 7.1E-08 1.5E-12 119.7 13.7 194 564-781 2205-2406(2439)
270 COG4946 Uncharacterized protei 98.7 1E-05 2.3E-10 89.4 28.8 120 565-685 357-483 (668)
271 TIGR03300 assembly_YfgL outer 98.7 7.9E-06 1.7E-10 93.6 29.8 263 422-780 66-345 (377)
272 PRK01029 tolB translocation pr 98.7 3E-06 6.5E-11 98.7 26.4 171 571-754 234-425 (428)
273 KOG1912 WD40 repeat protein [G 98.7 2.4E-05 5.2E-10 91.1 30.6 207 445-729 44-302 (1062)
274 PLN02919 haloacid dehalogenase 98.7 1.5E-05 3.2E-10 102.1 31.9 207 570-777 626-892 (1057)
275 COG4946 Uncharacterized protei 98.7 3.7E-05 8E-10 85.2 30.0 186 579-777 278-481 (668)
276 KOG3914 WD repeat protein WDR4 98.6 5.2E-07 1.1E-11 98.3 13.4 105 583-689 127-233 (390)
277 KOG4190 Uncharacterized conser 98.6 7.2E-07 1.6E-11 99.4 14.3 270 419-769 745-1032(1034)
278 COG5170 CDC55 Serine/threonine 98.6 2.4E-07 5.3E-12 97.2 10.0 262 455-780 25-316 (460)
279 KOG4532 WD40-like repeat conta 98.6 1.1E-05 2.4E-10 83.7 21.5 189 580-775 130-333 (344)
280 PRK04043 tolB translocation pr 98.6 2.8E-05 6E-10 90.2 27.7 203 555-774 176-401 (419)
281 TIGR02658 TTQ_MADH_Hv methylam 98.5 4.5E-05 9.7E-10 85.5 27.6 177 588-776 27-226 (352)
282 KOG4547 WD40 repeat-containing 98.5 1.4E-05 3E-10 91.2 21.7 185 579-775 6-222 (541)
283 PF15492 Nbas_N: Neuroblastoma 98.5 6E-05 1.3E-09 79.6 24.8 187 571-777 47-263 (282)
284 KOG0309 Conserved WD40 repeat- 98.5 4.7E-07 1E-11 104.2 9.3 210 452-729 110-337 (1081)
285 TIGR03300 assembly_YfgL outer 98.4 0.00011 2.3E-09 84.3 28.0 188 578-778 105-302 (377)
286 PF04762 IKI3: IKI3 family; I 98.4 0.00064 1.4E-08 86.0 36.8 294 455-776 208-567 (928)
287 PF13360 PQQ_2: PQQ-like domai 98.4 8.3E-05 1.8E-09 78.9 25.1 193 577-776 35-233 (238)
288 COG5170 CDC55 Serine/threonine 98.4 4.1E-06 9E-11 88.1 14.2 238 417-682 34-312 (460)
289 KOG0309 Conserved WD40 repeat- 98.4 2.7E-06 5.9E-11 98.1 14.0 284 456-775 24-341 (1081)
290 PF08450 SGL: SMP-30/Gluconola 98.4 0.00047 1E-08 74.1 29.2 182 570-761 42-243 (246)
291 PF00400 WD40: WD domain, G-be 98.4 1.2E-06 2.6E-11 65.4 6.4 37 448-484 3-39 (39)
292 PRK04043 tolB translocation pr 98.4 0.00012 2.6E-09 84.9 26.3 146 570-729 235-398 (419)
293 PLN02919 haloacid dehalogenase 98.3 0.00031 6.8E-09 90.2 30.1 204 571-776 571-836 (1057)
294 KOG4714 Nucleoporin [Nuclear s 98.2 1.4E-05 3E-10 82.7 13.3 184 577-771 100-316 (319)
295 KOG3914 WD repeat protein WDR4 98.2 1.5E-05 3.3E-10 87.1 13.4 156 612-781 67-231 (390)
296 PRK11138 outer membrane biogen 98.2 0.0013 2.8E-08 76.0 30.3 178 579-772 206-393 (394)
297 KOG2695 WD40 repeat protein [G 98.2 3.1E-06 6.7E-11 90.5 7.7 152 624-781 228-384 (425)
298 KOG0882 Cyclophilin-related pe 98.2 8.4E-06 1.8E-10 89.8 11.2 208 565-781 7-239 (558)
299 KOG4714 Nucleoporin [Nuclear s 98.2 1.7E-05 3.8E-10 82.0 12.5 71 569-639 181-255 (319)
300 KOG2695 WD40 repeat protein [G 98.2 5.5E-06 1.2E-10 88.6 8.5 145 560-710 246-402 (425)
301 KOG0882 Cyclophilin-related pe 98.1 1.5E-05 3.3E-10 87.9 11.8 264 421-776 20-308 (558)
302 PF15492 Nbas_N: Neuroblastoma 98.1 0.0012 2.7E-08 70.0 24.0 109 580-689 111-269 (282)
303 KOG2066 Vacuolar assembly/sort 98.1 7.2E-05 1.6E-09 88.1 16.1 186 606-816 38-235 (846)
304 PF08450 SGL: SMP-30/Gluconola 98.1 0.0026 5.7E-08 68.3 27.5 187 572-773 4-213 (246)
305 KOG1832 HIV-1 Vpr-binding prot 98.1 2.5E-06 5.4E-11 99.9 3.9 218 444-713 1089-1314(1516)
306 KOG1912 WD40 repeat protein [G 98.0 0.00025 5.4E-09 83.0 19.0 202 568-779 16-266 (1062)
307 PRK11138 outer membrane biogen 98.0 0.0024 5.3E-08 73.7 27.6 185 578-778 160-358 (394)
308 KOG4532 WD40-like repeat conta 98.0 0.00075 1.6E-08 70.4 20.4 215 422-714 85-316 (344)
309 KOG1275 PAB-dependent poly(A) 98.0 0.00011 2.5E-09 87.2 16.1 178 579-771 148-340 (1118)
310 PF07433 DUF1513: Protein of u 98.0 0.0016 3.5E-08 70.9 23.3 202 571-779 8-253 (305)
311 KOG1832 HIV-1 Vpr-binding prot 97.9 7.3E-06 1.6E-10 96.1 4.3 201 558-781 1092-1299(1516)
312 PF00400 WD40: WD domain, G-be 97.9 2.6E-05 5.6E-10 58.1 5.5 37 558-594 2-39 (39)
313 PF13360 PQQ_2: PQQ-like domai 97.9 0.0027 5.9E-08 67.3 23.0 181 587-777 2-195 (238)
314 PF07433 DUF1513: Protein of u 97.8 0.014 3.1E-07 63.6 26.9 196 562-774 51-284 (305)
315 KOG1920 IkappaB kinase complex 97.8 0.0026 5.7E-08 78.4 23.2 257 456-729 68-363 (1265)
316 PF08596 Lgl_C: Lethal giant l 97.8 0.008 1.7E-07 69.0 25.5 278 458-772 3-334 (395)
317 PF04053 Coatomer_WDAD: Coatom 97.7 0.0059 1.3E-07 71.1 24.5 180 571-774 72-263 (443)
318 KOG1645 RING-finger-containing 97.7 0.0012 2.6E-08 72.5 17.3 84 558-641 184-269 (463)
319 PF11768 DUF3312: Protein of u 97.7 0.0018 3.9E-08 74.9 19.2 129 590-730 186-328 (545)
320 KOG1920 IkappaB kinase complex 97.7 0.0016 3.5E-08 80.2 19.6 197 567-775 68-324 (1265)
321 KOG1645 RING-finger-containing 97.7 0.0026 5.6E-08 70.0 18.7 250 449-774 186-462 (463)
322 KOG2114 Vacuolar assembly/sort 97.6 0.0077 1.7E-07 72.0 22.4 211 413-687 27-251 (933)
323 KOG2114 Vacuolar assembly/sort 97.5 0.023 4.9E-07 68.2 25.3 162 563-735 60-247 (933)
324 KOG3617 WD40 and TPR repeat-co 97.5 0.002 4.4E-08 76.1 16.3 68 570-638 62-131 (1416)
325 KOG2066 Vacuolar assembly/sort 97.5 0.002 4.3E-08 76.3 16.3 183 568-773 40-233 (846)
326 PF06433 Me-amine-dh_H: Methyl 97.5 0.046 1E-06 60.5 25.9 269 431-739 17-330 (342)
327 KOG1008 Uncharacterized conser 97.5 3.2E-05 6.9E-10 88.7 1.2 197 568-775 57-277 (783)
328 PF06977 SdiA-regulated: SdiA- 97.5 0.025 5.3E-07 60.8 22.5 204 562-770 16-247 (248)
329 PF11768 DUF3312: Protein of u 97.4 0.0022 4.8E-08 74.1 14.9 115 568-684 206-334 (545)
330 KOG1275 PAB-dependent poly(A) 97.4 0.0019 4.1E-08 77.3 14.5 148 569-729 179-340 (1118)
331 PF00780 CNH: CNH domain; Int 97.4 0.045 9.7E-07 59.6 23.9 196 570-779 38-261 (275)
332 COG0823 TolB Periplasmic compo 97.4 0.0066 1.4E-07 70.4 17.8 197 557-765 182-391 (425)
333 KOG3617 WD40 and TPR repeat-co 97.3 0.016 3.5E-07 68.9 20.0 63 421-488 71-133 (1416)
334 KOG3621 WD40 repeat-containing 97.3 0.033 7.2E-07 65.6 22.4 159 412-641 36-200 (726)
335 cd00216 PQQ_DH Dehydrogenases 97.3 0.065 1.4E-06 63.8 25.8 180 585-780 172-431 (488)
336 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.085 1.9E-06 60.0 25.5 277 428-722 20-349 (353)
337 PRK02888 nitrous-oxide reducta 97.3 0.043 9.3E-07 65.2 23.2 174 585-774 212-405 (635)
338 PF03178 CPSF_A: CPSF A subuni 97.3 0.24 5.2E-06 55.4 28.7 173 588-774 2-203 (321)
339 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.3E-06 60.4 26.0 176 589-775 62-248 (410)
340 KOG1008 Uncharacterized conser 97.2 0.00026 5.6E-09 81.6 4.1 192 421-680 70-276 (783)
341 PF08596 Lgl_C: Lethal giant l 97.1 0.051 1.1E-06 62.5 21.1 203 569-778 3-295 (395)
342 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.1 2.2E-06 59.3 23.2 81 587-669 22-120 (353)
343 PF03178 CPSF_A: CPSF A subuni 97.0 0.071 1.5E-06 59.7 21.4 149 566-727 87-261 (321)
344 PF06977 SdiA-regulated: SdiA- 97.0 0.39 8.4E-06 51.6 25.8 157 568-728 65-247 (248)
345 smart00320 WD40 WD40 repeats. 97.0 0.0018 3.8E-08 45.7 5.5 36 449-484 5-40 (40)
346 COG3391 Uncharacterized conser 97.0 0.18 3.9E-06 58.0 24.6 201 571-777 77-287 (381)
347 PF08553 VID27: VID27 cytoplas 97.0 0.011 2.4E-07 72.4 15.1 146 619-773 492-647 (794)
348 PF14583 Pectate_lyase22: Olig 96.9 0.47 1E-05 53.6 26.0 173 588-773 168-381 (386)
349 PRK02888 nitrous-oxide reducta 96.9 0.066 1.4E-06 63.7 20.2 94 586-680 294-405 (635)
350 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.041 8.8E-07 51.0 14.0 103 610-727 2-110 (111)
351 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.63 1.4E-05 49.2 24.0 138 619-767 22-159 (354)
352 KOG3621 WD40 repeat-containing 96.8 0.047 1E-06 64.4 17.7 121 606-731 32-154 (726)
353 KOG1897 Damage-specific DNA bi 96.8 2.4 5.2E-05 52.5 32.3 182 581-776 687-901 (1096)
354 PF02897 Peptidase_S9_N: Proly 96.7 1.4 3.1E-05 51.0 29.2 180 589-777 203-408 (414)
355 PF04841 Vps16_N: Vps16, N-ter 96.6 1.2 2.6E-05 51.8 27.8 82 619-711 189-270 (410)
356 PF05096 Glu_cyclase_2: Glutam 96.6 0.49 1.1E-05 50.8 22.4 192 456-719 44-249 (264)
357 cd00216 PQQ_DH Dehydrogenases 96.5 0.99 2.1E-05 53.8 26.5 157 579-738 111-326 (488)
358 KOG4649 PQQ (pyrrolo-quinoline 96.4 1.6 3.5E-05 46.2 29.9 107 579-687 24-131 (354)
359 KOG4640 Anaphase-promoting com 96.4 0.012 2.7E-07 68.3 9.5 91 567-659 20-115 (665)
360 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.18 3.9E-06 46.8 15.0 100 570-675 2-110 (111)
361 KOG4640 Anaphase-promoting com 96.3 0.016 3.4E-07 67.4 9.8 96 606-710 19-115 (665)
362 KOG2395 Protein involved in va 96.3 0.032 7E-07 63.7 11.8 145 623-773 349-500 (644)
363 PF08553 VID27: VID27 cytoplas 96.3 0.11 2.3E-06 64.1 17.2 133 585-729 501-645 (794)
364 COG3386 Gluconolactonase [Carb 96.2 0.99 2.2E-05 50.2 22.6 118 590-719 145-274 (307)
365 COG0823 TolB Periplasmic compo 96.1 0.22 4.8E-06 57.9 17.9 158 606-776 191-361 (425)
366 smart00320 WD40 WD40 repeats. 96.1 0.013 2.8E-07 41.0 5.1 37 558-594 3-40 (40)
367 COG3204 Uncharacterized protei 96.0 0.79 1.7E-05 49.5 19.6 165 565-730 83-262 (316)
368 PF14727 PHTB1_N: PTHB1 N-term 95.8 5 0.00011 46.5 32.4 186 579-777 146-364 (418)
369 COG3391 Uncharacterized conser 95.8 4 8.7E-05 47.0 26.5 197 570-777 33-243 (381)
370 PF14583 Pectate_lyase22: Olig 95.7 4.3 9.4E-05 46.1 24.8 215 552-776 64-331 (386)
371 PRK13616 lipoprotein LpqB; Pro 95.3 0.81 1.8E-05 55.5 19.2 150 568-729 350-523 (591)
372 PF04053 Coatomer_WDAD: Coatom 95.3 0.53 1.1E-05 55.0 17.0 177 565-769 30-219 (443)
373 COG3490 Uncharacterized protei 95.1 0.33 7.2E-06 51.9 12.8 225 433-677 93-346 (366)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 5.7 0.00012 47.8 25.0 60 630-689 441-500 (527)
375 PF05694 SBP56: 56kDa selenium 95.0 3.7 8E-05 47.1 21.6 143 588-731 157-342 (461)
376 COG3386 Gluconolactonase [Carb 95.0 3.6 7.9E-05 45.7 21.5 191 573-778 30-247 (307)
377 PF00780 CNH: CNH domain; Int 95.0 6.7 0.00014 42.5 25.6 137 578-731 7-165 (275)
378 PRK13616 lipoprotein LpqB; Pro 95.0 0.7 1.5E-05 56.1 17.1 160 608-774 350-526 (591)
379 PF14870 PSII_BNR: Photosynthe 94.8 8.4 0.00018 42.7 27.8 155 606-770 143-301 (302)
380 PF06433 Me-amine-dh_H: Methyl 94.7 5.3 0.00011 44.6 21.3 207 573-783 100-330 (342)
381 COG3204 Uncharacterized protei 94.6 4.4 9.6E-05 44.0 19.9 166 606-775 84-265 (316)
382 PHA02713 hypothetical protein; 94.6 1.5 3.3E-05 53.1 18.7 186 577-777 303-537 (557)
383 KOG2444 WD40 repeat protein [G 94.5 0.062 1.3E-06 55.7 5.7 141 623-774 33-178 (238)
384 KOG1897 Damage-specific DNA bi 94.5 18 0.00039 45.3 34.2 196 567-774 404-614 (1096)
385 COG3490 Uncharacterized protei 94.4 2.1 4.6E-05 46.0 16.8 201 571-778 71-315 (366)
386 PF05694 SBP56: 56kDa selenium 94.3 4.7 0.0001 46.3 20.3 226 579-812 88-391 (461)
387 KOG4499 Ca2+-binding protein R 94.2 3.1 6.7E-05 43.6 17.0 56 655-719 217-272 (310)
388 TIGR03074 PQQ_membr_DH membran 93.9 9.9 0.00021 47.6 24.1 202 578-780 194-484 (764)
389 KOG2395 Protein involved in va 93.8 0.79 1.7E-05 52.9 12.9 136 581-729 349-498 (644)
390 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.5 9.8 0.00021 45.8 22.5 197 578-778 69-338 (527)
391 PF10168 Nup88: Nuclear pore c 93.5 17 0.00036 45.3 24.8 34 565-598 144-181 (717)
392 KOG4441 Proteins containing BT 93.4 2.5 5.4E-05 51.3 17.4 194 571-775 326-548 (571)
393 PF05096 Glu_cyclase_2: Glutam 93.2 15 0.00032 39.8 22.1 184 570-763 47-250 (264)
394 PF10647 Gmad1: Lipoprotein Lp 93.2 11 0.00025 40.6 20.5 155 569-727 25-192 (253)
395 PF12894 Apc4_WD40: Anaphase-p 93.1 0.28 6E-06 38.4 5.6 33 456-489 11-43 (47)
396 KOG4441 Proteins containing BT 92.8 6.3 0.00014 47.9 19.6 186 579-777 286-503 (571)
397 PF02897 Peptidase_S9_N: Proly 92.6 24 0.00052 40.8 28.5 240 418-685 133-410 (414)
398 KOG2079 Vacuolar assembly/sort 92.5 1.2 2.7E-05 55.3 12.8 98 579-679 100-203 (1206)
399 PHA03098 kelch-like protein; P 92.2 3.6 7.8E-05 49.5 16.8 104 578-685 295-420 (534)
400 KOG2280 Vacuolar assembly/sort 91.9 3.4 7.5E-05 49.8 15.1 242 568-822 44-295 (829)
401 KOG3630 Nuclear pore complex, 91.7 2.5 5.4E-05 53.0 14.0 138 570-713 103-256 (1405)
402 PF12234 Rav1p_C: RAVE protein 90.8 4.9 0.00011 48.7 15.3 112 651-773 31-156 (631)
403 PF12894 Apc4_WD40: Anaphase-p 90.7 0.88 1.9E-05 35.6 6.0 34 646-679 8-41 (47)
404 KOG2079 Vacuolar assembly/sort 90.7 1 2.3E-05 55.9 9.6 99 619-729 98-201 (1206)
405 COG5276 Uncharacterized conser 90.5 30 0.00065 37.8 27.1 164 600-779 79-247 (370)
406 PRK13684 Ycf48-like protein; P 90.5 35 0.00075 38.5 27.9 154 607-772 172-330 (334)
407 PF15390 DUF4613: Domain of un 90.0 7.2 0.00016 46.1 15.1 154 608-774 20-187 (671)
408 KOG3630 Nuclear pore complex, 89.7 4 8.6E-05 51.3 13.3 125 651-775 102-230 (1405)
409 TIGR02604 Piru_Ver_Nterm putat 89.6 11 0.00025 42.9 16.7 98 569-668 73-202 (367)
410 PHA02713 hypothetical protein; 89.6 15 0.00032 44.6 18.4 95 589-685 273-381 (557)
411 KOG4499 Ca2+-binding protein R 89.4 22 0.00047 37.5 16.4 189 580-781 29-249 (310)
412 KOG2444 WD40 repeat protein [G 89.3 0.86 1.9E-05 47.5 6.3 101 579-679 71-177 (238)
413 PF10647 Gmad1: Lipoprotein Lp 89.1 17 0.00037 39.2 16.8 149 609-766 25-188 (253)
414 PF07995 GSDH: Glucose / Sorbo 89.1 44 0.00096 37.6 26.7 69 700-768 252-330 (331)
415 PF14655 RAB3GAP2_N: Rab3 GTPa 88.1 58 0.0013 37.8 22.3 41 744-784 308-348 (415)
416 PF14781 BBS2_N: Ciliary BBSom 88.1 15 0.00033 35.5 13.3 104 579-684 11-130 (136)
417 KOG1916 Nuclear protein, conta 87.7 0.052 1.1E-06 65.3 -4.0 33 452-486 128-161 (1283)
418 PHA02790 Kelch-like protein; P 87.4 19 0.00041 42.8 17.2 106 579-686 273-391 (480)
419 PF10313 DUF2415: Uncharacteri 87.4 1.8 3.9E-05 33.1 5.4 32 457-488 1-35 (43)
420 PF15390 DUF4613: Domain of un 87.2 20 0.00044 42.5 16.2 149 568-730 20-185 (671)
421 TIGR03118 PEPCTERM_chp_1 conse 86.8 45 0.00097 36.8 17.5 113 610-729 25-168 (336)
422 PRK10115 protease 2; Provision 86.4 97 0.0021 38.7 31.5 192 572-776 176-397 (686)
423 TIGR02604 Piru_Ver_Nterm putat 86.2 18 0.00039 41.3 15.6 150 608-762 14-202 (367)
424 PF14727 PHTB1_N: PTHB1 N-term 85.8 77 0.0017 36.9 29.9 60 620-679 145-204 (418)
425 PF12234 Rav1p_C: RAVE protein 85.2 19 0.0004 43.9 15.3 116 610-729 32-154 (631)
426 PF14870 PSII_BNR: Photosynthe 84.9 69 0.0015 35.6 25.3 182 570-768 64-256 (302)
427 TIGR03074 PQQ_membr_DH membran 84.5 1.2E+02 0.0027 38.2 23.6 155 579-733 261-479 (764)
428 PLN00033 photosystem II stabil 84.3 87 0.0019 36.3 31.5 152 610-770 241-396 (398)
429 COG3823 Glutamine cyclotransfe 84.2 19 0.00041 37.4 12.5 130 586-719 109-247 (262)
430 COG5167 VID27 Protein involved 84.2 8.9 0.00019 44.4 11.2 146 619-774 478-633 (776)
431 KOG2280 Vacuolar assembly/sort 84.2 57 0.0012 39.9 18.3 135 551-688 67-255 (829)
432 PF10168 Nup88: Nuclear pore c 83.7 18 0.00039 45.0 14.8 81 650-731 85-179 (717)
433 PRK13684 Ycf48-like protein; P 82.6 91 0.002 35.1 19.2 152 567-730 172-330 (334)
434 PF03022 MRJP: Major royal jel 82.2 86 0.0019 34.6 21.2 171 589-761 35-253 (287)
435 PF13449 Phytase-like: Esteras 81.8 63 0.0014 36.3 17.3 145 567-713 19-227 (326)
436 KOG1916 Nuclear protein, conta 81.6 0.8 1.7E-05 55.7 2.0 115 563-679 128-265 (1283)
437 PF07569 Hira: TUP1-like enhan 81.2 11 0.00024 39.8 10.3 75 607-685 12-101 (219)
438 PF14655 RAB3GAP2_N: Rab3 GTPa 81.0 1.2E+02 0.0025 35.4 26.8 38 650-687 308-345 (415)
439 PF08728 CRT10: CRT10; InterP 81.0 19 0.00042 44.2 13.2 121 651-772 102-245 (717)
440 PF14781 BBS2_N: Ciliary BBSom 80.6 27 0.00058 33.8 11.5 106 612-729 3-123 (136)
441 PLN02153 epithiospecifier prot 80.2 1.1E+02 0.0023 34.4 21.6 104 578-684 33-172 (341)
442 COG5167 VID27 Protein involved 80.1 14 0.00031 42.8 10.9 135 581-729 483-630 (776)
443 TIGR03547 muta_rot_YjhT mutatr 80.1 95 0.0021 34.9 18.2 41 630-670 168-210 (346)
444 PHA03098 kelch-like protein; P 78.9 23 0.00051 42.5 13.5 65 619-685 294-372 (534)
445 PF13449 Phytase-like: Esteras 78.7 1.2E+02 0.0026 34.1 18.3 150 608-760 20-231 (326)
446 PLN02193 nitrile-specifier pro 77.6 1.6E+02 0.0034 34.9 21.1 105 578-684 176-307 (470)
447 PF07569 Hira: TUP1-like enhan 77.4 11 0.00023 39.9 8.7 70 657-729 18-93 (219)
448 PF14761 HPS3_N: Hermansky-Pud 77.2 1E+02 0.0022 32.4 16.6 56 621-676 29-92 (215)
449 KOG1898 Splicing factor 3b, su 77.2 1.7E+02 0.0036 37.5 19.4 172 589-774 854-1049(1205)
450 TIGR03548 mutarot_permut cycli 76.3 1.2E+02 0.0025 33.8 17.3 106 578-685 73-200 (323)
451 PF07995 GSDH: Glucose / Sorbo 75.9 39 0.00085 38.0 13.3 111 651-765 3-135 (331)
452 KOG2247 WD40 repeat-containing 75.7 0.39 8.6E-06 54.8 -2.7 145 571-727 38-184 (615)
453 PF14761 HPS3_N: Hermansky-Pud 74.9 1.1E+02 0.0025 32.0 16.6 106 576-683 26-167 (215)
454 COG1520 FOG: WD40-like repeat 74.1 1.6E+02 0.0036 33.4 19.8 109 577-688 67-180 (370)
455 KOG1900 Nuclear pore complex, 73.4 27 0.00059 45.1 11.9 166 606-775 77-274 (1311)
456 TIGR03606 non_repeat_PQQ dehyd 73.1 1.1E+02 0.0023 36.2 16.0 116 647-764 27-166 (454)
457 KOG1983 Tomosyn and related SN 72.9 2.4E+02 0.0052 36.8 20.5 77 562-643 193-269 (993)
458 PRK10115 protease 2; Provision 72.8 2.5E+02 0.0055 35.0 24.7 190 569-773 128-344 (686)
459 TIGR03032 conserved hypothetic 70.6 1.8E+02 0.0039 32.4 20.9 108 592-712 189-316 (335)
460 PF10313 DUF2415: Uncharacteri 68.8 14 0.0003 28.4 5.0 32 608-639 1-34 (43)
461 KOG4460 Nuclear pore complex, 68.3 52 0.0011 38.6 11.7 83 650-733 104-200 (741)
462 KOG3616 Selective LIM binding 66.8 2E+02 0.0042 35.4 16.1 36 454-489 12-47 (1636)
463 COG3823 Glutamine cyclotransfe 66.1 1.7E+02 0.0038 30.6 13.7 114 573-689 51-168 (262)
464 KOG3616 Selective LIM binding 65.9 49 0.0011 40.2 11.1 71 605-678 12-82 (1636)
465 PF07250 Glyoxal_oxid_N: Glyox 65.6 65 0.0014 34.6 11.4 140 632-777 48-201 (243)
466 KOG1898 Splicing factor 3b, su 65.5 4E+02 0.0086 34.4 28.7 39 456-494 582-626 (1205)
467 PF02333 Phytase: Phytase; In 65.1 2.6E+02 0.0056 32.1 21.3 152 619-775 67-239 (381)
468 KOG1983 Tomosyn and related SN 64.3 78 0.0017 41.2 13.7 26 752-777 243-268 (993)
469 PF08728 CRT10: CRT10; InterP 64.1 55 0.0012 40.4 11.6 100 578-678 114-245 (717)
470 PF10214 Rrn6: RNA polymerase 64.0 3.9E+02 0.0085 33.8 27.5 159 565-732 77-277 (765)
471 TIGR03606 non_repeat_PQQ dehyd 62.5 1.3E+02 0.0028 35.5 13.9 54 607-661 29-90 (454)
472 PF08801 Nucleoporin_N: Nup133 62.2 1.5E+02 0.0033 34.4 14.9 31 744-774 190-220 (422)
473 PF07250 Glyoxal_oxid_N: Glyox 60.7 60 0.0013 34.9 10.0 87 591-678 49-147 (243)
474 KOG2377 Uncharacterized conser 60.1 77 0.0017 36.7 10.9 137 573-720 28-173 (657)
475 PF10395 Utp8: Utp8 family; I 59.9 3.7E+02 0.0081 33.2 17.3 188 456-667 129-344 (670)
476 PF10214 Rrn6: RNA polymerase 59.6 4.6E+02 0.01 33.2 25.9 120 557-680 132-277 (765)
477 PF11635 Med16: Mediator compl 59.2 4.7E+02 0.01 33.1 21.3 197 622-818 64-344 (753)
478 PLN02153 epithiospecifier prot 58.6 3E+02 0.0066 30.8 20.1 93 589-685 102-231 (341)
479 KOG4460 Nuclear pore complex, 57.3 4E+02 0.0086 31.7 20.4 34 569-602 167-204 (741)
480 PF12768 Rax2: Cortical protei 56.7 2E+02 0.0044 31.6 13.5 99 631-734 17-126 (281)
481 KOG4659 Uncharacterized conser 56.1 6.2E+02 0.013 33.6 21.5 80 564-646 344-435 (1899)
482 COG5290 IkappaB kinase complex 55.3 4.1E+02 0.0088 33.2 16.1 96 652-756 249-349 (1243)
483 TIGR03548 mutarot_permut cycli 54.3 3.4E+02 0.0074 30.1 20.7 66 619-685 72-153 (323)
484 PF07676 PD40: WD40-like Beta 53.6 42 0.00092 24.4 5.4 31 453-483 5-38 (39)
485 KOG2247 WD40 repeat-containing 53.1 2.4 5.2E-05 48.7 -2.1 114 653-778 38-152 (615)
486 KOG2377 Uncharacterized conser 52.5 4.4E+02 0.0096 30.8 18.3 35 454-488 64-98 (657)
487 PF12768 Rax2: Cortical protei 52.2 2E+02 0.0043 31.7 12.5 90 588-678 16-122 (281)
488 TIGR03118 PEPCTERM_chp_1 conse 51.9 3.8E+02 0.0082 29.9 21.8 145 579-731 101-279 (336)
489 TIGR01063 gyrA DNA gyrase, A s 51.8 6.2E+02 0.013 32.3 22.5 251 463-729 491-767 (800)
490 PHA02790 Kelch-like protein; P 51.2 3.7E+02 0.008 31.9 15.8 103 579-686 320-430 (480)
491 KOG0783 Uncharacterized conser 50.6 1.7E+02 0.0037 36.5 12.2 36 452-491 226-261 (1267)
492 PF12657 TFIIIC_delta: Transcr 50.4 64 0.0014 32.5 8.0 32 650-681 86-123 (173)
493 PF11715 Nup160: Nucleoporin N 50.2 55 0.0012 39.5 8.7 38 457-494 215-256 (547)
494 COG4590 ABC-type uncharacteriz 49.5 1.5E+02 0.0031 34.5 10.9 162 606-777 219-390 (733)
495 PF12657 TFIIIC_delta: Transcr 49.2 1.2E+02 0.0026 30.5 9.8 31 744-774 86-122 (173)
496 KOG1900 Nuclear pore complex, 48.0 1.5E+02 0.0033 38.7 11.9 160 566-730 77-271 (1311)
497 PRK14131 N-acetylneuraminic ac 45.8 5E+02 0.011 29.5 17.2 214 553-776 15-323 (376)
498 PLN02193 nitrile-specifier pro 45.8 5.8E+02 0.012 30.2 19.4 95 588-686 244-358 (470)
499 PRK05560 DNA gyrase subunit A; 45.7 7.6E+02 0.016 31.6 25.0 196 578-774 548-773 (805)
500 PF11715 Nup160: Nucleoporin N 45.0 87 0.0019 37.8 9.4 38 651-688 216-257 (547)
No 1
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-74 Score=661.45 Aligned_cols=594 Identities=49% Similarity=0.790 Sum_probs=456.8
Q ss_pred cCCCceEEEcccccCCccceeeeecCCccccHHHHHHhhCCCHHHHHHHHhhccc-cCCCCccccCCCCCCC-CCCcccc
Q 002407 298 LDNGKEFVVNEIQEDGTWKKVKEVGTGRQLTIEEFEMCVGHSPIVQELMRRQNVE-EGNKDSFDLNNNGSSG-GGMKSKK 375 (927)
Q Consensus 298 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~g~s~~~~~l~~r~~~~-~~~~~~~~~~~~~~~~-~~~~~kk 375 (927)
+|.|+||+|++...+|+|+++.+++++.++++||||...|.++.+++||++++.+ +... ...+.+-... ...+.||
T Consensus 106 ~~~~~e~~v~e~~~~~~~~~~sd~~~~~~~~~e~~e~~~g~~~~v~~l~~~~~~~~~~~~--~~~~~~~s~s~~~~~~~r 183 (712)
T KOG0283|consen 106 LDTGDEFSVSENPEDGSVNRLSDVGTGASSTLEELESSPGESSRVKELGDRENADLDEML--TKYNDDVSGSVLLRKSKR 183 (712)
T ss_pred ecccceeeEeeccCccccccccCCCcccccccccccCCcCcccchhhhhhhcccccchhh--cccccccccccccchhhh
Confidence 6999999999999999999999999999999999999999999999999999886 2111 1111111111 2233333
Q ss_pred c-Ccccccccceeeeeccc-cCCCCCCcccCccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEee
Q 002407 376 K-GSWFKSIRTVASSVTGH-KERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ 453 (927)
Q Consensus 376 k-~~Wl~~~~~~~~~~~g~-k~~~~~~~~~~~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~ 453 (927)
. ..|+++++.+++.+.+. +.++...+.+...+..+...-....+....-+......+++.+.+..+++..++..|+++
T Consensus 184 ~~~~~l~~~k~~~~~~s~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~rvkv~~~~K~~kelsal~~~Qe~~ 263 (712)
T KOG0283|consen 184 YGKRWLKSLKVVAHSLSSLSENRRSRFDSDSSSQFHNYLSEPKSSKDKEMKYNLPSRVKVRHYKKSPKELSALTVVQEIS 263 (712)
T ss_pred hhhhhhhhccccccccccccccccccccccchhcccccccccccccccccccCCcceEEecccCCCcccceeeEEeeccc
Confidence 3 45999999999999765 444445555555555666655666666665566678999999999999999999999999
Q ss_pred -cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 454 -AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 454 -gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
+|.++||+|+||+||+||||||+||.|+||.+.+.+....- ..........+.......-+... . .....
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~----~~~~~~~~~~~~~~s~~~p~~s~--~---~~~~~ 334 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVA----EGDSSCMYFEYNANSQIEPSTSS--E---EKISS 334 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhccc----ccccchhhhhhhhccccCccccc--c---ccccc
Confidence 99999999999999999999999999999999876542211 00111111111111110000000 0 00111
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEE
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTC 612 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~ 612 (927)
......+.........+..++.+..+|++.|.||.+.|.+|.|+.+++|+++++|+|||||++...+|+++|.|.+.|+|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 11223334444457778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccc
Q 002407 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (927)
Q Consensus 613 v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~ 692 (927)
|+|+|.|++||++|+.|++|+||++...+++.|.+.++.|+++||.|||++.++|+.+|.|++|++...++.....+...
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 693 ~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
..++..+. .||+++|.|.....+++++.|..|||||+ ..++++|+++.+....+.+.|+.||++|+++++|..||||
T Consensus 495 ~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 77766666 99999999988778999999999999998 7899999999999999999999999999999999999999
Q ss_pred ECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC
Q 002407 771 KYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP 850 (927)
Q Consensus 771 dl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP 850 (927)
++.........+.......++.|++.++.+++.|.|...--. ....++++... ..|
T Consensus 574 ~~~~~~~~~~~~~~~~~~s~e~f~s~~vs~a~~w~g~~~~n~----------ss~~p~~~~~~--------------~~~ 629 (712)
T KOG0283|consen 574 KNDSFNSEASHKKTKSIRSYEHFSSVDVSVAIPWPGFHAHNP----------SSNLPPLIKAA--------------LRP 629 (712)
T ss_pred eCCCCccccccccccccccccccccccccccccccccccccc----------cccCCCCcccc--------------cCc
Confidence 998765444444556678899999999999999998752211 01111111110 123
Q ss_pred CCCeEEEeccccccCccccccCchhhccccc-cCCCcee--ccc--CCCC-CcccCCCCCEEEEEcCCCcEEEeecCCCc
Q 002407 851 LNGTISSATNSYFFDRISATWPEEKLVLTAR-NRSPRTS--LDI--SNGI-SSSISAWGMVIVTAGLRGEIRAYQNFGLP 924 (927)
Q Consensus 851 dg~~Lasas~~~~~d~~v~~W~~e~l~~~~~-~~s~v~s--~~~--~~~~-~~a~S~dG~vLvTgs~DG~IrvW~~~glP 924 (927)
...+..+....+...+...+|+++++....+ ....... ... ++.. ..+..+||++|+||+++|.||+|+|||||
T Consensus 630 ~~~~~~s~~~~~~~~~~s~t~~e~~~~~s~~~~~~~~~~~~~~~S~~~~~~~~~~~~wg~vivTs~~~g~Ir~~~n~glp 709 (712)
T KOG0283|consen 630 VNEFKLSSPMRSLNSRGSATWPEEKLLDSPGASASSRSSIKFLMSGCQRSSSSSPHAWGMVIVTSTLDGQIRCFQNYGLP 709 (712)
T ss_pred ccccccCCccccccccccccCcccccccccCcccccccccccccCCCccccccccCCCcceeeeccccceEEEEEecCCC
Confidence 3333333333344557789999998754332 1111111 111 1111 22356899999999999999999999999
Q ss_pred ccC
Q 002407 925 VRI 927 (927)
Q Consensus 925 ~~~ 927 (927)
.++
T Consensus 710 ~~~ 712 (712)
T KOG0283|consen 710 RRV 712 (712)
T ss_pred CCC
Confidence 875
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-38 Score=331.35 Aligned_cols=293 Identities=23% Similarity=0.388 Sum_probs=248.6
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
..+...+.||.++|.|++|+|+|++||||+.|.++|+||+.+.....+. .+|.+.|.+++|+||+..|+++..++
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-----cCCccEEEEEEECCCcchhhccccCC
Confidence 3456778999999999999999999999999999999999988776664 78999999999999999999999999
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC------cEEEEEeCCCcEEEEeCCCCc
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS------QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd------~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
.|..+... ..+.....|.+|...|++|+|.|- .+|++++.||+|+|||+..++
T Consensus 180 ~I~lwdpk---------------------tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 180 SIRLWDPK---------------------TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred eEEEecCC---------------------CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 88443311 123455678999999999999872 679999999999999999999
Q ss_pred EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEEC-----------CCC-----
Q 002407 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYT-----------PDG----- 661 (927)
Q Consensus 600 ~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~s-----------pdg----- 661 (927)
++..+. |+.+|+|+.|- ...+|++|+.|++|++|+...|.+...+ .|...|+.++++ |.+
T Consensus 239 ~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 239 CVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred EEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 998887 99999999997 4679999999999999999998877644 455688888876 223
Q ss_pred --------------------CEEEEEECCCeEEEEECCCCe-eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 662 --------------------QGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 662 --------------------~~l~tgs~Dg~I~IwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
..+++|+.|.++.+|+....+ .+.. ..+|..-|+.+.|+|++. +|++++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r---------mtgHq~lVn~V~fSPd~r-~IASaS 386 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR---------MTGHQALVNHVSFSPDGR-YIASAS 386 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh---------hhchhhheeeEEECCCcc-EEEEee
Confidence 349999999999999976544 2222 258999999999999987 899999
Q ss_pred CCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 721 ADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 721 ~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.|..|++||..+ .+..|.+ |-..|..++|+.|.++|++|+.|.+++||++++.+..
T Consensus 387 FDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred cccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 999999999655 4455555 4677999999999999999999999999999886543
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-37 Score=324.40 Aligned_cols=308 Identities=18% Similarity=0.322 Sum_probs=269.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+++|+.+.++|+|+..+.. +..+.++|...|.||+|+|||+.||+|+.||+|++||..+++.+... ..+
T Consensus 128 ~~l~tGsGD~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~----l~g 198 (480)
T KOG0271|consen 128 SRLVTGSGDTTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA----LRG 198 (480)
T ss_pred ceEEecCCCceEEeeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc----ccC
Confidence 457999999999999977654 34567999999999999999999999999999999999999877665 478
Q ss_pred ccccEEEEccCC-----CCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEe
Q 002407 502 HLNMLLLANGSP-----EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 502 ~~~~v~~v~~sp-----d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~ 575 (927)
|...|.+++|.| ...++++++.++.+ .+|+.. +..+..+.||+.+|+|+.|
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~v-----------------------rIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSV-----------------------RIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCE-----------------------EEEEccCceEEEEeccCccceEEEEE
Confidence 889999998876 46688888888877 455553 4678899999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEc-----------c------------------------CC
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN-----------P------------------------VD 619 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fs-----------p------------------------~d 619 (927)
--+++|++++.|++|++|+...|.+.+++. |...|+.|+.+ | ..
T Consensus 256 GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 256 GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 989999999999999999999999999887 99999998876 2 01
Q ss_pred CCEEEEEECCCcEEEEeCCCC-cEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 620 DRYFISGSLDAKVRIWSIPER-QVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 620 g~~L~sgs~Dg~I~IWDl~t~-~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
+..|++|+.|.++.+|+-... +++ ....|..-|+.+.|+||++++++++-|..|++||.++|+.+..+ +
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf---------R 406 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF---------R 406 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh---------h
Confidence 235999999999999986543 333 57788899999999999999999999999999999999988775 5
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
+|-..|+.++|+.|.. +|++++.|.+++||+.++....+....|...|.++.|+|||..+++|+.|..+++|.
T Consensus 407 GHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 8999999999999876 899999999999999887777777777788899999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.4e-35 Score=298.69 Aligned_cols=293 Identities=19% Similarity=0.287 Sum_probs=253.6
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++|+||.+.|.+|.|++|.++|++++.||.+.|||.-+..+...+ .-....|..++++|.+.+++.++.++....
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-----ecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 678999999999999999999999999999999999887766554 345678999999999999999999887633
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~ 608 (927)
......-. .-..+..+.+.+|++-+.|+.|.+|+.|+|++.|.++.+||+++++.+..|. |..
T Consensus 124 y~ls~~d~----------------~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 124 YPLSTRDA----------------EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred Eecccccc----------------cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcc
Confidence 22110000 0011345678999999999999999999999999999999999999999998 999
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
.|.++.+.|.+++.|++|+.|+..+|||++.+.+++. ..|+..|++++|.|+|.-|++|+.|+++++||++..+.+..+
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVY 267 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeee
Confidence 9999999998999999999999999999999998875 456679999999999999999999999999999998877776
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
.- ......|++++|+..|+ +|++|..|..+.+||.-+....-....|...|.++..+|||..|++|+.|..+
T Consensus 268 s~-------~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 268 SH-------DSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred cc-------CcccCCceeEEEccccc-EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence 52 35567899999999987 89999999999999976665555555678889999999999999999999999
Q ss_pred EEEE
Q 002407 768 YVWK 771 (927)
Q Consensus 768 ~IWd 771 (927)
+||.
T Consensus 340 riW~ 343 (343)
T KOG0286|consen 340 RIWA 343 (343)
T ss_pred eecC
Confidence 9994
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-32 Score=296.42 Aligned_cols=457 Identities=16% Similarity=0.171 Sum_probs=319.1
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
+-...+.....+..++++.....-++-.+ .+.....+..|...++-..|||.|-|+|+|...|+|||||....
T Consensus 19 g~~~~ig~dpkgd~ilY~nGksv~ir~i~-------~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~ 91 (603)
T KOG0318|consen 19 GVPIIIGGDPKGDNILYTNGKSVIIRNID-------NPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK 91 (603)
T ss_pred CcceEeccCCCCCeEEEeCCCEEEEEECC-------CccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc
Confidence 33333443444556677666655554443 22234556889999999999999999999999999999998764
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
+.+.. ........+|.-+.|+.++..+++.+.+..-.- ..+...++..+-.+.||..
T Consensus 92 ~hiLK---nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg--------------------~~F~~DSG~SvGei~GhSr 148 (603)
T KOG0318|consen 92 EHILK---NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG--------------------HVFLWDSGNSVGEITGHSR 148 (603)
T ss_pred ceeee---eeeeecccccccceeCCCCcEEEEEecCcccee--------------------EEEEecCCCccceeeccce
Confidence 32211 112344567888999999988887655432100 0122236678889999999
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.|++++|-|. =+++||+.|++|.+|+=.-.+....+. |...|.|+.|+| |+.+|++.+.||+|.+||=.+++.+..
T Consensus 149 ~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~ 227 (603)
T KOG0318|consen 149 RINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGE 227 (603)
T ss_pred eEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEE
Confidence 9999999998 469999999999999977666666666 999999999999 999999999999999999999988865
Q ss_pred c----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 646 N----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 646 ~----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
+ .|.+.|.+++|+||++.|++++.|.+++|||+.+.+++.++.+.. .-......+.|..+ .|++.+.
T Consensus 228 l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~------~v~dqqvG~lWqkd---~lItVSl 298 (603)
T KOG0318|consen 228 LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS------TVEDQQVGCLWQKD---HLITVSL 298 (603)
T ss_pred ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC------chhceEEEEEEeCC---eEEEEEc
Confidence 5 467899999999999999999999999999999999988876421 12234445556532 7999999
Q ss_pred CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc-cccceeeeeeeecCCCeEE
Q 002407 722 DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS-KSITVTHSYEHFHCQDVSV 800 (927)
Q Consensus 722 Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~-~~~~~~~~~~~~~~~~v~v 800 (927)
+|.|.+++............|...|+++..++++++|++|+.||.|.-|++.++..-... +.+........-...+...
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~ 378 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELF 378 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEE
Confidence 999999997655444444556788999999999999999999999999999876432110 1111111111111111112
Q ss_pred EEecCCce-----------------------------------------------------------------------e
Q 002407 801 AIPWPGVG-----------------------------------------------------------------------D 809 (927)
Q Consensus 801 avs~~g~~-----------------------------------------------------------------------~ 809 (927)
.+.|+.+. .
T Consensus 379 t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~v 458 (603)
T KOG0318|consen 379 TIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEV 458 (603)
T ss_pred EEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEE
Confidence 22222222 2
Q ss_pred EEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc-cc---ccCCC
Q 002407 810 TWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL-TA---RNRSP 885 (927)
Q Consensus 810 i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~-~~---~~~s~ 885 (927)
+++.+++.+......-.... .+..-....-..+.++||||+.|||++- ..+.+..|+.+.-.. +. -|.+.
T Consensus 459 aVGG~Dgkvhvysl~g~~l~--ee~~~~~h~a~iT~vaySpd~~yla~~D----a~rkvv~yd~~s~~~~~~~w~FHtak 532 (603)
T KOG0318|consen 459 AVGGQDGKVHVYSLSGDELK--EEAKLLEHRAAITDVAYSPDGAYLAAGD----ASRKVVLYDVASREVKTNRWAFHTAK 532 (603)
T ss_pred EEecccceEEEEEecCCccc--ceeeeecccCCceEEEECCCCcEEEEec----cCCcEEEEEcccCceecceeeeeeee
Confidence 22233333332222111111 1111123345667789999999999965 667888898764322 11 23333
Q ss_pred ceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 886 RTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 886 v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+. +++|||+.+.+|||+.|-.|.||.
T Consensus 533 I~--------~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 533 IN--------CVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EE--------EEEeCCCceEEEeccccceEEEEE
Confidence 32 689999999999999999999997
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-35 Score=312.02 Aligned_cols=281 Identities=21% Similarity=0.362 Sum_probs=252.5
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC--CCeecccccCCceeee
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNHLEKK 530 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd--~~~la~~~~~~~i~~~ 530 (927)
.|-+.+|..+.|+.|++.||||+.+|.++||+..+...+.++ .+|...+..+.|.|. ...++++..++.+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-----~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv--- 243 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-----RGHTSRVGAAVFHPVDSDLNLATASADGTV--- 243 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-----eccccceeeEEEccCCCccceeeeccCCce---
Confidence 367889999999999999999999999999999998777775 688999999999997 6788888888887
Q ss_pred cccccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
++|.++. .++..|.+|...|..++|+|+ .+|+|++.|.+-++||+.++..+.... |.
T Consensus 244 --------------------klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 244 --------------------KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred --------------------eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc
Confidence 5666655 889999999999999999999 789999999999999999998766554 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..|.+++|+| +|.++++|+.|..-+|||++++.++.++. |-..|..|+|+|+|..|++|+.|++++|||++....+..
T Consensus 304 ~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 304 KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred cccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 9999999999 99999999999999999999999887554 558999999999999999999999999999999888666
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
+ .+|..-|+.+.|.|+...+|++++.|++++||........-....|...|.++.+++|+.+|++++.|.+
T Consensus 383 i---------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 383 I---------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred c---------ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 5 4899999999999977779999999999999997765555555556888999999999999999999999
Q ss_pred EEEEE
Q 002407 767 VYVWK 771 (927)
Q Consensus 767 I~IWd 771 (927)
|++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99995
No 7
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=306.47 Aligned_cols=445 Identities=17% Similarity=0.190 Sum_probs=336.4
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~g-H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~ 490 (927)
+...+......++++.....-+++|.+.++.+.+.. ++ |+++|..|+|+|.|.+||+||.|+.|+|||+..+.+
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw-----Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW-----KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhH-----hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 445555556778899999999999999888666554 56 999999999999999999999999999999999888
Q ss_pred cceeecccccCccccEEEEccCCCC--CeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEEEccC
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEP--TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGH 566 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~--~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH 566 (927)
...+ .++.+.|..+.|.|+. .+|+++..++.+ .+|++.. .++..+..|
T Consensus 140 th~f-----kG~gGvVssl~F~~~~~~~lL~sg~~D~~v-----------------------~vwnl~~~~tcl~~~~~H 191 (775)
T KOG0319|consen 140 THSF-----KGHGGVVSSLLFHPHWNRWLLASGATDGTV-----------------------RVWNLNDKRTCLHTMILH 191 (775)
T ss_pred EEEe-----cCCCceEEEEEeCCccchhheeecCCCceE-----------------------EEEEcccCchHHHHHHhh
Confidence 8776 6888999999999974 457777777777 4444432 235677788
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecC--------------------------------------
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHS-------------------------------------- 607 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~-------------------------------------- 607 (927)
...|++|+|.++ ..+++++.|+.+.|||+.+-+++++++..
T Consensus 192 ~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 888888888888 66888888888888887654433333222
Q ss_pred ----------------------------------------------------CceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 608 ----------------------------------------------------DYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 608 ----------------------------------------------------~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+.|.+++|-..+.++|+.++..+.+++|
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY 351 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE
Confidence 2344444432245566666666666666
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
++.+..+.-..+|.+.|.++....+|-+|++|+.|.++++|.++++...... .....+|...|.+++++..+..+
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~-----~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC-----VAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh-----hhhhcccccccceeeecccCccE
Confidence 6666555555677788999997778889999999999999988544332211 12235899999999999988889
Q ss_pred EEEEECCCcEEEEECCc---------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 716 VLVTSADSRIRVVDGID---------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
|++++.|.+|++|+... +...+....|...|.+++++|+.++|||||.|.+.+||+++.......+.++..
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 99999999999999654 112234456788899999999999999999999999999998888888888888
Q ss_pred eeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccC
Q 002407 787 THSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFD 865 (927)
Q Consensus 787 ~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d 865 (927)
..-+..|...+..++ .+.+.++.+|...+... +....+|...+.- +.|--++..|.|++ .|
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC--lkT~eGH~~aVlr------------a~F~~~~~qliS~~----ad 568 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC--LKTFEGHTSAVLR------------ASFIRNGKQLISAG----AD 568 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEecccee--eeeecCccceeEe------------eeeeeCCcEEEecc----CC
Confidence 778888888766555 56678889998775432 2222233332221 45899999999988 89
Q ss_pred ccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 866 RISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 866 ~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+-+++|+..+-.. ...|...+- +++.++...+++|||.||.|-+|.-
T Consensus 569 GliKlWnikt~eC~~tlD~H~DrvW--------aL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTLDAHNDRVW--------ALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred CcEEEEeccchhhhhhhhhccceeE--------EEeecCccceeEecCCCeEEEEeec
Confidence 9999999764322 345555554 4678899999999999999999984
No 8
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-30 Score=291.98 Aligned_cols=441 Identities=16% Similarity=0.201 Sum_probs=332.6
Q ss_pred cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccc
Q 002407 442 DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPK 521 (927)
Q Consensus 442 ~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~ 521 (927)
++......+++.+|-..|.+|.|+.|.++|++|+.|.+++||.+...+.... ....+|...|..+-|..+..-+.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~---~~l~gHkd~VvacfF~~~~~~l~tv 207 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT---YALNGHKDYVVACFFGANSLDLYTV 207 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce---EeccCCCcceEEEEeccCcceEEEE
Confidence 4555666788899999999999999999999999999999999987765332 3357888999999998888878888
Q ss_pred ccCCceeeecccc-ccccccc----c-cCcc--------cccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC
Q 002407 522 HLDNHLEKKRRGR-SINRKSL----S-LDHM--------VVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 522 ~~~~~i~~~~~~~-~~~~~~~----~-~~~~--------~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
+.++.+..+.... +...... . .+.. ......|... ..+-+......|++.+|++. ..|+++-.
T Consensus 208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~--~k~~ln~~~~kvtaa~fH~~t~~lvvgFs 285 (893)
T KOG0291|consen 208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT--KKHYLNQNSSKVTAAAFHKGTNLLVVGFS 285 (893)
T ss_pred ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE--EeeeecccccceeeeeccCCceEEEEEec
Confidence 8888876665442 1100000 0 0000 0001111111 01122333478999999998 88999999
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECC-CcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCE
Q 002407 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLD-AKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~D-g~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~ 663 (927)
.|...+|.+....+++.+. ...+|..+.|+. .|++|+.|+.. |.+-||++.+...+. ...|-..+++++++|||++
T Consensus 286 sG~f~LyelP~f~lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~ 364 (893)
T KOG0291|consen 286 SGEFGLYELPDFNLIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQL 364 (893)
T ss_pred CCeeEEEecCCceEEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcE
Confidence 9999999999999999998 558999999998 89999988765 789999999987665 4556689999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeec
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFR 741 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~ 741 (927)
+++|+.||.|+|||...+-+..++. .|+..|+.++|+..+. .+++.+-||+|+.||... ....|...
T Consensus 365 iaTG~eDgKVKvWn~~SgfC~vTFt---------eHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P- 433 (893)
T KOG0291|consen 365 IATGAEDGKVKVWNTQSGFCFVTFT---------EHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSP- 433 (893)
T ss_pred EEeccCCCcEEEEeccCceEEEEec---------cCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCC-
Confidence 9999999999999999999988864 8999999999999886 899999999999999644 33344433
Q ss_pred CCcceEEEEEecCCCEEEEEECCCc-EEEEECCCCCCcccccccceeeeeeeecCCCe-EEEEecCCceeEEeecCC--c
Q 002407 742 NTNSQISASLTANGRYVVSASEDSY-VYVWKYEAESRPSRSKSITVTHSYEHFHCQDV-SVAIPWPGVGDTWGLQDT--Y 817 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~-I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v-~vavs~~g~~~i~~~~d~--~ 817 (927)
......+++..|.|.++++|+.|.. |+||++++++.+..+.++........|.+.+. .+..+|+.++++|++-+. .
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 2334457888888999999998875 99999999999999989888888778887654 444789999999987665 2
Q ss_pred eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc----c--------ccCCC
Q 002407 818 LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT----A--------RNRSP 885 (927)
Q Consensus 818 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~----~--------~~~s~ 885 (927)
...+.. ..-+..++|+|+|+.||.++ .|+.+.+|+.+..... . .....
T Consensus 514 vEtl~i----------------~sdvl~vsfrPdG~elaVaT----ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 514 VETLEI----------------RSDVLAVSFRPDGKELAVAT----LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred eeeEee----------------ccceeEEEEcCCCCeEEEEE----ecceEEEEEhhhceeeccccchhhccccccccce
Confidence 222221 12234567999999999998 8889999987632111 0 00111
Q ss_pred ceecccCCC---CCcccCCCCCEEEEEcCCCcEEEee
Q 002407 886 RTSLDISNG---ISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 886 v~s~~~~~~---~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
++......+ ..+.+|+||+.|++||....|.+|+
T Consensus 574 ~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred eehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 111111111 1588999999999999999999988
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.1e-33 Score=296.76 Aligned_cols=279 Identities=20% Similarity=0.292 Sum_probs=237.7
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCC
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.|-..+|..+.|+.+ ..|+||+.+|.++||+..+...+.+|. |...|.++.|+|. ++..|++|+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 367789999999998 889999999999999999998888887 9999999999996 3778999999999999999997
Q ss_pred cEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 641 QVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 641 ~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
..+. +..|...|..++|+|+|++|++++.|.+-++||++++...... .+|...|.+++|.|+|. ++++|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q---------EGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ---------EGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh---------cccccccceeEecCCCc-eeecc
Confidence 6665 5566689999999999999999999999999999998766543 59999999999999998 89999
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeE
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVS 799 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~ 799 (927)
+.|..-+|||+++..+.+....|...|.++.|+|+|..||||+.|++++|||++......... .|.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip----------AH~---- 387 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP----------AHS---- 387 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc----------ccc----
Confidence 999999999998877777777788999999999999999999999999999998754321111 111
Q ss_pred EEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC-CCCeEEEeccccccCccccccCchh---
Q 002407 800 VAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP-LNGTISSATNSYFFDRISATWPEEK--- 875 (927)
Q Consensus 800 vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP-dg~~Lasas~~~~~d~~v~~W~~e~--- 875 (927)
.-++.+.|+| .|.+|++++ .|.++++|....
T Consensus 388 -----------------------------------------nlVS~Vk~~p~~g~fL~Tas----yD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 388 -----------------------------------------NLVSQVKYSPQEGYFLVTAS----YDNTVKIWSTRTWSP 422 (459)
T ss_pred -----------------------------------------chhhheEecccCCeEEEEcc----cCcceeeecCCCccc
Confidence 1112344888 677899987 889999998763
Q ss_pred hccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 876 LVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 876 l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+....+|...+.++ ..++||++|+|++.|.+||+|.
T Consensus 423 ~ksLaGHe~kV~s~--------Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 423 LKSLAGHEGKVISL--------DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred chhhcCCccceEEE--------EeccCCceEEEeccCceeeecc
Confidence 33467888888754 6778999999999999999996
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-30 Score=281.23 Aligned_cols=444 Identities=16% Similarity=0.220 Sum_probs=327.8
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVV 486 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~--DgtVrVWdv~ 486 (927)
.+...++-......++++|...|+||+|+...++. ....+++.-.++|..|+|+.|++.|+..|+ ++..+++-++
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h---iLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH---ILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcce---eeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 34445555556666789999999999999887643 233567778899999999999999988764 3344444445
Q ss_pred cCcccceeecccccCccccEEEEccCCC-CCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEcc
Q 002407 487 ESERKGELLEKQEDGHLNMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (927)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~v~~v~~spd-~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g 565 (927)
++..+.++ .+|...+.++.+.|. ...+++++.++.+.+..-. .-|...+++.
T Consensus 136 SG~SvGei-----~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP----------------------PFKFk~s~r~ 188 (603)
T KOG0318|consen 136 SGNSVGEI-----TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP----------------------PFKFKSSFRE 188 (603)
T ss_pred CCCcccee-----eccceeEeeeeccCCCceEEEeccCCCeEEEeeCC----------------------Ceeeeecccc
Confidence 56666665 688899999999996 6678888888876432111 1144456778
Q ss_pred CCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
|..-|.|+.|+|| .++++++.||+|.+||=.+++.+..+. |.+.|.+|.|+| |+..|++++.|.+++|||+.+.
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeecc
Confidence 9999999999999 789999999999999999999999886 999999999999 9999999999999999999776
Q ss_pred cEEE--------------------------------------------eccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 641 QVVD--------------------------------------------WNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 641 ~~v~--------------------------------------------~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
+++. ...|...|++++.+|++++|++|+.||.|.-|
T Consensus 268 slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 268 SLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred ceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 4421 13455789999999999999999999999999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----------------------c-
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----------------------D- 732 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----------------------~- 732 (927)
+..++..-.... ..|...|.+++-+..+ .+++.+.|.++++.+.. .
T Consensus 348 ~~~~g~~~~~~g--------~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 348 DSGSGTSDRLAG--------KGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred ecCCcccccccc--------ccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 999876544321 4799999999988755 58999999999998620 0
Q ss_pred ---------ceEEEEeec------CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc--cccccceeeeeeeecC
Q 002407 733 ---------LVHKFKGFR------NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS--RSKSITVTHSYEHFHC 795 (927)
Q Consensus 733 ---------~~~~~~~~~------~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~--~~~~~~~~~~~~~~~~ 795 (927)
.+..++.+. ..-...+++++|++.+++.|+.|+.|+||.+....... ....+....+...|++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC
Confidence 001111110 11223568899999999999999999999999865432 2334555566777777
Q ss_pred CCeEEEEe-cCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCch
Q 002407 796 QDVSVAIP-WPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEE 874 (927)
Q Consensus 796 ~~v~vavs-~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e 874 (927)
+...+|+. ..+.+.+|....+... ......|+ .-+..++|||++.++|+++ .|..+-+|..+
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~----------~~~w~FHt---akI~~~aWsP~n~~vATGS----lDt~Viiysv~ 560 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVK----------TNRWAFHT---AKINCVAWSPNNKLVATGS----LDTNVIIYSVK 560 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCcee----------cceeeeee---eeEEEEEeCCCceEEEecc----ccceEEEEEcc
Confidence 77666554 3455666666655431 11111111 1123467999999999987 99999999876
Q ss_pred hhc----cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 875 KLV----LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 875 ~l~----~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+.. ....|...+..+ +|- |...||+.|.|-.||+|+
T Consensus 561 kP~~~i~iknAH~~gVn~v--------~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 561 KPAKHIIIKNAHLGGVNSV--------AWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ChhhheEeccccccCceeE--------EEe-cCceEEeccCcceeEEec
Confidence 432 234555445443 333 466789999999999998
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5e-30 Score=289.31 Aligned_cols=436 Identities=18% Similarity=0.232 Sum_probs=316.3
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc--cc-eeecccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KG-ELLEKQE 499 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~--~~-~l~~~~~ 499 (927)
++++..++|+...-+...... .+.+ .-+.+|.||+|||+|+++|.|. .+.+.||....... .. -.+....
T Consensus 69 lllavdE~g~~~lvs~~~r~V-----lh~f-~fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~ 141 (893)
T KOG0291|consen 69 LLLAVDERGRALLVSLLSRSV-----LHRF-NFKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTY 141 (893)
T ss_pred EEEEEcCCCcEEEEeccccee-----eEEE-eecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeee
Confidence 455556666655554332211 1111 1367899999999999998886 56899999865433 11 1124445
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.++...+.++.|+.|..++++++.+......... ....-..+.+.+|.+.|..+-|..+
T Consensus 142 ~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~--------------------~~k~~~~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVD--------------------GNKNLFTYALNGHKDYVVACFFGANS 201 (893)
T ss_pred cCCccceeEEEeccCCceEEeccccceEEEEEec--------------------cccccceEeccCCCcceEEEEeccCc
Confidence 6888899999999999999998887765322111 1122335678899999999999988
Q ss_pred cEEEEEeCCCcEEEEeCCC-----------------------CcE-----E--EE----Ee-cCCceEEEEEccCCCCEE
Q 002407 579 QHLLSSSMDKTVRLWHLSS-----------------------KTC-----L--KI----FS-HSDYVTCIQFNPVDDRYF 623 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t-----------------------~~~-----~--~~----~~-h~~~V~~v~fsp~dg~~L 623 (927)
..|+|.+.||.+.+|.... ++. . +. +. ....|++.+|++ .-+.|
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~l 280 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLL 280 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEE
Confidence 6799999999999998761 111 0 00 11 237899999999 88999
Q ss_pred EEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECC-CeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 624 ISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
++|-..|...+|.++...++...... ..|..++|+..|.+|+.|+.. |.+.||+......+.+. .+|..
T Consensus 281 vvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ---------QgH~~ 351 (893)
T KOG0291|consen 281 VVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ---------QGHSD 351 (893)
T ss_pred EEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec---------ccccc
Confidence 99999999999999999998876665 789999999999999999876 89999999887766554 48999
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
.+++++++|||+ ++++|+.||+|+|||.....+......|...++.+.|+..|+.|++++.||+|+.||+.....-.+.
T Consensus 352 ~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 352 RITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred ceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 999999999997 8999999999999998886666666667888999999999999999999999999999875432222
Q ss_pred cccceeeeeeeecCCCeEEEEecCCceeEEeecCC-ceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecc
Q 002407 782 KSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDT-YLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATN 860 (927)
Q Consensus 782 ~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~-~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~ 860 (927)
......+ -..+++...|.....+.++. .+..|+..+++..-+ +.||++.+. .++|+|++..||+++
T Consensus 431 t~P~p~Q--------fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--LsGHEgPVs--~l~f~~~~~~LaS~S- 497 (893)
T KOG0291|consen 431 TSPEPIQ--------FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--LSGHEGPVS--GLSFSPDGSLLASGS- 497 (893)
T ss_pred cCCCcee--------eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--hcCCCCcce--eeEEccccCeEEecc-
Confidence 1111100 11334444444433332222 355566555554433 346665443 346999999999987
Q ss_pred ccccCccccccCchhh---ccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 861 SYFFDRISATWPEEKL---VLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 861 ~~~~d~~v~~W~~e~l---~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+|+++++|+.-.- ..+..+.+.+. +++|+|||+-|+.+..||.|.+|+.
T Consensus 498 ---WDkTVRiW~if~s~~~vEtl~i~sdvl--------~vsfrPdG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 498 ---WDKTVRIWDIFSSSGTVETLEIRSDVL--------AVSFRPDGKELAVATLDGQITFFDI 549 (893)
T ss_pred ---ccceEEEEEeeccCceeeeEeecccee--------EEEEcCCCCeEEEEEecceEEEEEh
Confidence 9999999986321 00111122222 5799999999999999999999983
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.4e-31 Score=264.43 Aligned_cols=287 Identities=18% Similarity=0.356 Sum_probs=242.6
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.+...++++.+.+-+||.|...++ .+..+++...+.|+.+.+.||+++||+|+. ..||+||+.++.
T Consensus 7 ~d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-------- 72 (311)
T KOG0315|consen 7 TDDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-------- 72 (311)
T ss_pred CCCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC--------
Confidence 345567889999999999976655 556777878889999999999999999985 579999997653
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
..|+.+|.+|+..|+.+.|..
T Consensus 73 -----------------------------------------------------------p~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 73 -----------------------------------------------------------PNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred -----------------------------------------------------------CCceeEEeccCCceEEEEEee
Confidence 246778999999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--ccCCCcEEE
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTA 654 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~~~~~~V~s 654 (927)
+ ..++||++||+++|||++...+.+.|.|..+|+++..+| +...|++|..+|.|++||+....+... .+....|.+
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~s 172 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQS 172 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceee
Confidence 8 669999999999999999999999999999999999999 888999999999999999988755443 333468999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~- 733 (927)
++..|||.+++.+...|++++|++-..+....+. +..+++.|...|..+.++|+++ +|++++.|.+++||+....
T Consensus 173 l~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~---P~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 173 LTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE---PVHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred EEEcCCCcEEEEecCCccEEEEEccCCCccccce---EhhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCce
Confidence 9999999999999999999999998754433322 2334578999999999999987 8999999999999997655
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccc
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
........+...+..++||.||+||++|+.|+.+++|++..++......
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 3333344456789999999999999999999999999999987654443
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-31 Score=267.63 Aligned_cols=299 Identities=19% Similarity=0.279 Sum_probs=242.4
Q ss_pred eeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 448 KCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
..-+|++|++.|+.++..+. -..|++++.|.++.+|++.....
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------------------------ 50 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------------------------ 50 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------------------------
Confidence 34578999999999999987 45889999999999999864310
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
..+.+++.|.||...|..+..+++ ++.++++.|+++++||+.+++..+.|.
T Consensus 51 ----------------------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 51 ----------------------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV 102 (315)
T ss_pred ----------------------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE
Confidence 124677889999999999999999 789999999999999999998888876
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC--CCcEEEEEECCC--CCEEEEEECCCeEEEEECCC
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL--HEMVTAACYTPD--GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~--~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~ 680 (927)
|...|.+++|+| +...|++|+.|.+|++|++-.......... .+.|.++.|+|+ ..+|+.++.|++|++||+++
T Consensus 103 GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 103 GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred ecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 999999999999 999999999999999999988777665555 689999999997 78999999999999999999
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las 760 (927)
.++...+ .+|.+.++.++++|||. ++++|+.||.+.+||+......+ ...+...|.+++|+|+...|+.
T Consensus 182 ~~l~~~~---------~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k~ly-sl~a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 182 CQLRTTF---------IGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGKNLY-SLEAFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred cchhhcc---------ccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCceeE-eccCCCeEeeEEecCCceeEee
Confidence 8887765 48999999999999998 89999999999999987766643 4456788999999999766666
Q ss_pred EECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccc
Q 002407 761 ASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFST 823 (927)
Q Consensus 761 gs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~ 823 (927)
+. +..|+|||+++......++.-....+...-.+.-..+|.+.+|........++.+..|..
T Consensus 251 at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 251 AT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 64 555999999997765444321111111111222344455555777777777777777653
No 14
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=5.7e-29 Score=280.66 Aligned_cols=432 Identities=16% Similarity=0.220 Sum_probs=327.2
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.+....++.|-.+|.|++|+..+++.. -++.||+.+|++|.|...|..|||||.|+.|.|||+........+
T Consensus 74 ~~d~l~lAVGYaDGsVqif~~~s~~~~-----~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL--- 145 (888)
T KOG0306|consen 74 SDDILLLAVGYADGSVQIFSLESEEIL-----ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL--- 145 (888)
T ss_pred cCCcceEEEEecCceEEeeccCCCcee-----eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe---
Confidence 344556799999999999998877443 456899999999999999999999999999999999877766664
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEec
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~s 576 (927)
.+|...+...-|..+..++++.+.+..+ ++|++.. .+..+...|.+.|+.+++.
T Consensus 146 --~GHkd~iT~~~F~~~~~~lvS~sKDs~i-----------------------K~WdL~tqhCf~Thvd~r~Eiw~l~~~ 200 (888)
T KOG0306|consen 146 --RGHKDSITQALFLNGDSFLVSVSKDSMI-----------------------KFWDLETQHCFETHVDHRGEIWALVLD 200 (888)
T ss_pred --ecchHHHhHHhccCCCeEEEEeccCceE-----------------------EEEecccceeeeEEecccceEEEEEEe
Confidence 6777788877788777788888788877 5666644 4555667899999999998
Q ss_pred CCcEEEEEeCCCcEEEEeCCC------------------------CcEEEE--------------------E--------
Q 002407 577 KSQHLLSSSMDKTVRLWHLSS------------------------KTCLKI--------------------F-------- 604 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t------------------------~~~~~~--------------------~-------- 604 (927)
+ ..+++++.|+.+++|++.. ++.+.. |
T Consensus 201 ~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~ 279 (888)
T KOG0306|consen 201 E-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEI 279 (888)
T ss_pred c-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHH
Confidence 7 7888899999999998710 000000 0
Q ss_pred --------------------------------------------------------------------------------
Q 002407 605 -------------------------------------------------------------------------------- 604 (927)
Q Consensus 605 -------------------------------------------------------------------------------- 604 (927)
T Consensus 280 ~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p 359 (888)
T KOG0306|consen 280 AKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSP 359 (888)
T ss_pred HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCc
Confidence
Q ss_pred -----------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 605 -----------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 605 -----------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
.|...|..++|+. +...+++| ..+.|++|+..+.+++..+... .+.+..|.|.++++++|...|.+
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~-d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSS-DSILLASG-AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGEL 436 (888)
T ss_pred cccccceeeeccchhheeEEEeec-Cceeeeec-CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCce
Confidence 1455567777775 44444444 4578999999999999877766 78899999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-------cceEEE-----Eeec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-------DLVHKF-----KGFR 741 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-------~~~~~~-----~~~~ 741 (927)
.+||+....++... .+|.+.|..++..|++. .+++++.|.+|++||.. .....+ +...
T Consensus 437 ~vfdlaS~~l~Eti---------~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 437 QVFDLASASLVETI---------RAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred EEEEeehhhhhhhh---------hccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 99999988877664 48999999999999987 79999999999999921 111111 1122
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCC-eEEEEecCCceeEEeecCCceee
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQD-VSVAIPWPGVGDTWGLQDTYLDE 820 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~-v~vavs~~g~~~i~~~~d~~i~~ 820 (927)
-...|.++.+||||++|+.+--|.+|+||-+++-+--..+-++.....++..+++. ..+..+.+..+.+|+.+=+....
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 35678999999999999999999999999999876555555666666666555543 44445667777777765433211
Q ss_pred ccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCc
Q 002407 821 FSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISS 897 (927)
Q Consensus 821 ~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~ 897 (927)
-- ..|. .+...+.|-|+..++++++ .|+.++-|+.+++.. ..+|...+. |+
T Consensus 587 S~------------fAHd--DSvm~V~F~P~~~~FFt~g----KD~kvKqWDg~kFe~iq~L~~H~~ev~--------cL 640 (888)
T KOG0306|consen 587 SF------------FAHD--DSVMSVQFLPKTHLFFTCG----KDGKVKQWDGEKFEEIQKLDGHHSEVW--------CL 640 (888)
T ss_pred hh------------hccc--CceeEEEEcccceeEEEec----CcceEEeechhhhhhheeeccchheee--------ee
Confidence 10 1111 2234456999999999987 899999999886533 446665554 57
Q ss_pred ccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 898 SISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 898 a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
+.+|+|.++|++|.|..||+|...-
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999998543
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=6.1e-30 Score=262.25 Aligned_cols=286 Identities=16% Similarity=0.266 Sum_probs=240.5
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+..++|+||.+.|.++.|++| .+|++++.||.+.|||.-+...++.++ ....|..++|+| .++++++|+.|+...||
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEE
Confidence 455889999999999999999 889999999999999999988888887 778999999999 99999999999999999
Q ss_pred eCCCC--c----EE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 636 SIPER--Q----VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 636 Dl~t~--~----~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
++.+. + +. .+..|...+.++.|.+|+ .|++++.|.++-+||+++++....+ .+|.+.|.++.+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f---------~GH~gDV~slsl 194 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF---------HGHTGDVMSLSL 194 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe---------cCCcccEEEEec
Confidence 99865 1 22 356677888899998755 7999999999999999999988876 499999999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceee
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~ 788 (927)
.|...+.+++|+-|+..+|||.+........+.|...|.++.|.|+|.-+++|++|++.++||++.......
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-------- 266 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-------- 266 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee--------
Confidence 995556899999999999999887766666667788899999999999999999999999999987643221
Q ss_pred eeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccc
Q 002407 789 SYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRIS 868 (927)
Q Consensus 789 ~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v 868 (927)
|..+. ...+++.++||..|++|+.+. .|.++
T Consensus 267 ----ys~~~-----------------------------------------~~~gitSv~FS~SGRlLfagy----~d~~c 297 (343)
T KOG0286|consen 267 ----YSHDS-----------------------------------------IICGITSVAFSKSGRLLFAGY----DDFTC 297 (343)
T ss_pred ----eccCc-----------------------------------------ccCCceeEEEcccccEEEeee----cCCce
Confidence 11100 012345567999999999965 78889
Q ss_pred cccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 869 ATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 869 ~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
..|+.-+... +.+|...++ ++..+|||+.++||+||-+||||.
T Consensus 298 ~vWDtlk~e~vg~L~GHeNRvS--------cl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 298 NVWDTLKGERVGVLAGHENRVS--------CLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eEeeccccceEEEeeccCCeeE--------EEEECCCCcEEEecchhHheeecC
Confidence 9999865432 457776666 468899999999999999999994
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=9.2e-30 Score=259.71 Aligned_cols=280 Identities=16% Similarity=0.285 Sum_probs=246.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
..+.++.++.+.++-+|+....+.......+.|.||...|..+..++||++.++++.|+++++||+.+++....|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f----- 101 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF----- 101 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-----
Confidence 456788899999999999998888777788999999999999999999999999999999999999999777665
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC--CCCEEEEEecC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH--LDDVLDLSWSK 577 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH--~~~V~~l~~sp 577 (927)
.+|...|.+++++++...++++..+..+ .+|+..+.+..++..+ .+.|.|+.|+|
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTi-----------------------klwnt~g~ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTI-----------------------KLWNTLGVCKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCccee-----------------------eeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence 6889999999999999999999999888 5677777777777655 78999999999
Q ss_pred C---cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE
Q 002407 578 S---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT 653 (927)
Q Consensus 578 d---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~ 653 (927)
+ ..|++++.|++|++||+++.+....+. |+..++.++++| ||.+.++|+.||.+.+||++.++.+..+.+...|.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 7 579999999999999999998888776 999999999999 99999999999999999999999999999999999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 654 sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++|+|+.-.|+.+. +..|+|||+.++.++..+.+.......+.......+++|+++|. .|++|..|+.|++|..
T Consensus 238 sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~-tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 238 SLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ-TLFAGYTDNVIRVWQV 312 (315)
T ss_pred eEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc-EEEeeecCCcEEEEEe
Confidence 999999887776665 45599999999998887766544332333445567889999998 7999999999999974
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.2e-30 Score=289.42 Aligned_cols=421 Identities=18% Similarity=0.204 Sum_probs=320.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.-...|++++..||+++|++++....+++|++.+++.+..+ ...|..++..+++.|.+.++++++.++.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw----Ka~He~Pvi~ma~~~~g~LlAtggaD~~v------ 129 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW----KAIHEAPVITMAFDPTGTLLATGGADGRV------ 129 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhH----hhccCCCeEEEEEcCCCceEEeccccceE------
Confidence 45678999999999999999999999999999999877776 34578999999999999999999999987
Q ss_pred ccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcE-EEEEe-cC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC-LKIFS-HS 607 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~-~~~~~-h~ 607 (927)
.+|++.. ...+.|+||.+.|..+.|+|+ ..|++|..|++|++||+..+.. +.++. |.
T Consensus 130 -----------------~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~ 192 (775)
T KOG0319|consen 130 -----------------KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK 192 (775)
T ss_pred -----------------EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh
Confidence 5666654 567899999999999999998 4589999999999999996554 55554 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC-----CCEEEEEECCCeEEEEECCCCe
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd-----g~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+.|++++|.+ ++..+++++.|..+.|||+.+.+..........+.++.+-++ +.++++++.+|.+++||..+++
T Consensus 193 S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~ 271 (775)
T KOG0319|consen 193 SAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK 271 (775)
T ss_pred hheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccch
Confidence 9999999999 899999999999999999987777777777777888888776 6789999999999999887654
Q ss_pred eeeecccc-cc---------------------------------------------------------------------
Q 002407 683 LQQKSPIN-LQ--------------------------------------------------------------------- 692 (927)
Q Consensus 683 ~~~~~~i~-~~--------------------------------------------------------------------- 692 (927)
+....... .+
T Consensus 272 ~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 272 CVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLY 351 (775)
T ss_pred hhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEE
Confidence 33221110 00
Q ss_pred ------cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC----cceEEEEeecCCcceEEEEEecCC-CEEEEE
Q 002407 693 ------NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI----DLVHKFKGFRNTNSQISASLTANG-RYVVSA 761 (927)
Q Consensus 693 ------~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~~~~~~~~~~~v~sv~fspdg-~~Lasg 761 (927)
-....+|...|.++....+| .+|++++.|.++++|... ..........|...|.+++++..+ .+|+++
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence 00012566677777744444 389999999999999542 222223334456778889887654 689999
Q ss_pred ECCCcEEEEECCCCCCcccccccceeeeeeeecCCC-eEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcc
Q 002407 762 SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQD-VSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDC 840 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~-v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~ 840 (927)
|.|++|++|++...+.... .........+..|.++ ..++++.+........+|.....|... +......+.||...
T Consensus 431 S~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le--~~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE--QLRLLGVLSGHTRG 507 (775)
T ss_pred cCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc--CceEEEEeeCCccc
Confidence 9999999999987332221 1122222334445444 466777777777777888888888765 33334445677655
Q ss_pred cCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEE
Q 002407 841 RSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRA 917 (927)
Q Consensus 841 ~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~Irv 917 (927)
+.. +.|+|..+.+|+++ .|+++++|..+.... ..+|.+.+. .++|-.+|+.|++|+.||.||+
T Consensus 508 vw~--V~Fs~~dq~laT~S----gD~TvKIW~is~fSClkT~eGH~~aVl--------ra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 508 VWC--VSFSKNDQLLATCS----GDKTVKIWSISTFSCLKTFEGHTSAVL--------RASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred eEE--EEeccccceeEecc----CCceEEEEEeccceeeeeecCccceeE--------eeeeeeCCcEEEeccCCCcEEE
Confidence 544 45999999999987 999999999886544 345666554 3578889999999999999999
Q ss_pred eec
Q 002407 918 YQN 920 (927)
Q Consensus 918 W~~ 920 (927)
|..
T Consensus 574 Wni 576 (775)
T KOG0319|consen 574 WNI 576 (775)
T ss_pred Eec
Confidence 985
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=257.87 Aligned_cols=273 Identities=24% Similarity=0.395 Sum_probs=236.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+.+|++.|.+++|+|+|.+|||||.|..|.+|++....
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 4568999999999999999999999999999999964321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+....+++|.+.|..+.|.++ ..|++++.|++|+.||++++++++.+. |.
T Consensus 81 ----------------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~ 132 (338)
T KOG0265|consen 81 ----------------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT 132 (338)
T ss_pred ----------------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc
Confidence 122345689999999999999 889999999999999999999999888 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..|+.+.-...+..++.+++.|++++|||+++...++.+..+..+++++|...+..+++|+-|+.|++||++.+......
T Consensus 133 ~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l 212 (338)
T KOG0265|consen 133 SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL 212 (338)
T ss_pred ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEe
Confidence 99999985554566788999999999999999999999988999999999999999999999999999999998887775
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC------cceEEEEeecCCc--ceEEEEEecCCCEEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI------DLVHKFKGFRNTN--SQISASLTANGRYVV 759 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~------~~~~~~~~~~~~~--~v~sv~fspdg~~La 759 (927)
.+|...|+.+..+|+|. .+++-+.|.++++||.+ .++..+.++.+.. ....++|+|+++++.
T Consensus 213 ---------sGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 213 ---------SGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred ---------ecccCceeeEEeccCCC-ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 49999999999999987 79999999999999953 3567777776643 345789999999999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEE
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSV 800 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~v 800 (927)
+|+.|..+++||.......-...++........||+..-.+
T Consensus 283 ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 283 AGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPII 323 (338)
T ss_pred cccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEE
Confidence 99999999999998877666777777777777888765443
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=250.81 Aligned_cols=289 Identities=20% Similarity=0.365 Sum_probs=234.3
Q ss_pred eeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+...+.+++|++.|+.++|+|- |..|||||.|+.||||+...+.. .........+|...|..++|+|.+.+|++++.+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 4556888999999999999998 89999999999999999985221 222223356899999999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC---cE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---TC 600 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~---~~ 600 (927)
....++.... -.-+.+.++.||...|.+++|+++ ++|+|++.|+.|-||.+..+ ++
T Consensus 83 ~t~~Iw~k~~--------------------~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 83 ATVVIWKKED--------------------GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred ceEEEeecCC--------------------CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence 8774443221 122567889999999999999999 88999999999999999854 45
Q ss_pred EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC-CC--cEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 601 LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ER--QVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~-t~--~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
+.++. |+..|..+.|+| ...+|++++.|.+|++|.-. .. .+++ +..++..|.+++|++.|..|++++.|++++|
T Consensus 143 ~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 66665 999999999999 99999999999999999866 32 3444 4455569999999999999999999999999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------ceEEEEeecCCcceE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--------LVHKFKGFRNTNSQI 747 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--------~~~~~~~~~~~~~v~ 747 (927)
|-....- . ..|...++.+.|. ++ .|++++.|+.|+||.... ++.. ....|...|.
T Consensus 222 w~~~~~~-----~--------~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVN 284 (312)
T KOG0645|consen 222 WRLYTDL-----S--------GMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVN 284 (312)
T ss_pred eeeccCc-----c--------hhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccc
Confidence 9865211 1 3577889999999 44 799999999999997221 1111 2234566899
Q ss_pred EEEEecC-CCEEEEEECCCcEEEEECC
Q 002407 748 SASLTAN-GRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 748 sv~fspd-g~~Lasgs~Dg~I~IWdl~ 773 (927)
++.|.|. ..+|++++.||.|++|.+.
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999995 6899999999999999875
No 20
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.2e-30 Score=280.98 Aligned_cols=288 Identities=20% Similarity=0.404 Sum_probs=247.7
Q ss_pred eeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 448 KCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
...++.||+..|.++.|.| .+.+|++++.|+.|+||++-.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------------------------- 246 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------------------------- 246 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec---------------------------------------
Confidence 3467899999999999999 899999999999999999743
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.++++++|.||..+|.+++|+++ ..+++++.|++|++||+++|+++..|.
T Consensus 247 -----------------------------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~ 297 (503)
T KOG0282|consen 247 -----------------------------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH 297 (503)
T ss_pred -----------------------------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe
Confidence 23567788999999999999999 679999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
....++|+.|+|.+.+.|++|+.|+.|+.||++++++++...++ ..|..+.|-++|+.+++.+.|++++||+.+....+
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i 377 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI 377 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc
Confidence 99999999999955599999999999999999999998866655 79999999999999999999999999999877655
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----cceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----DLVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----~~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
.... ......+.++..+|.++ ++++=+.|..|.+|... +....|++|...+.-..+.|||||.+|+
T Consensus 378 k~i~--------~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 378 KNIA--------DPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred hhhc--------chhhccCcceecCCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 4432 23445677899999887 78888999999999843 4566788888888889999999999999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCC--CeEEEEecCCceeEEe
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQ--DVSVAIPWPGVGDTWG 812 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~--~v~vavs~~g~~~i~~ 812 (927)
+|+.||.+++||.++-+.....+.+........||+. ...++..|+|.+.+|.
T Consensus 449 SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999998887777766555555566653 4566778999988873
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.3e-28 Score=258.00 Aligned_cols=283 Identities=27% Similarity=0.452 Sum_probs=233.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++|++|.+.|++++|+|++++|++++.||.|++|++.+++....+ ..+...+..+.+.+++..++++..++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~~~~i-- 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-----KGHTGPVRDVAASADGTYLASGSSDKTI-- 75 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-----ecCCcceeEEEECCCCCEEEEEcCCCeE--
Confidence 456799999999999999999999999999999999877644443 3455667788999998888888777766
Q ss_pred ecccccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
.+|++.. +.+..+..|...|.++.|+++ ..+++++.|+.|++||+.+++....+. |
T Consensus 76 ---------------------~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 76 ---------------------RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred ---------------------EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 3444433 567778889999999999998 566666679999999999888888877 8
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
...|.+++|+| ++.++++++.++.|++||+.+++.+..+ .+...+.+++|+|+++.+++++.++.|++||+..++...
T Consensus 135 ~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 88999999999 7888888888999999999987766544 444589999999999999999999999999999877665
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+ ..+...+.+++|+|++. ++++++.++.|++||............+...+.+++|++++++|++++.|+
T Consensus 214 ~~---------~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 214 TL---------RGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred ch---------hhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence 53 25677999999999853 677777799999999764433333335567899999999999999999999
Q ss_pred cEEEEE
Q 002407 766 YVYVWK 771 (927)
Q Consensus 766 ~I~IWd 771 (927)
.|++|+
T Consensus 284 ~i~iw~ 289 (289)
T cd00200 284 TIRIWD 289 (289)
T ss_pred eEEecC
Confidence 999996
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.5e-28 Score=263.78 Aligned_cols=292 Identities=20% Similarity=0.308 Sum_probs=251.9
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccc----eeec-----ccccCccccEEEEccCCCCCeecccccC
Q 002407 455 HNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKG----ELLE-----KQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 455 H~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~----~l~~-----~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
|+.+|.+++|+|-.. .||+|+.|-+.++|++....... .+.+ .........|.+++|+.+|.+|+++..+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 999999999999665 89999999999999998521111 1111 1122344678999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
+.+ .+|...+..+.+|..|.++|.+|.|+.. .+|++++.|+++.|||..+++..+.
T Consensus 257 G~~-----------------------riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 257 GEA-----------------------RIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cEE-----------------------EEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 988 6778888999999999999999999998 7899999999999999999999999
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
|. |..+-..|.|- +...|++++.|+.|+|+.+....++ .+..|+..|.++.|.|.|.+|++++.|++++||.+...
T Consensus 314 f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 98 77776888997 4667999999999999999876655 46678899999999999999999999999999999887
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCC--------cEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSS--------SEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~--------~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.....+ ..|...|+.+.|+|.++ ..+++++.|++|++||....+.......|..+|.+++|+|
T Consensus 392 ~~~~~l---------~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 392 NSVHDL---------QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred cchhhh---------hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 776665 48999999999999753 4799999999999999888888888778899999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 754 NGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 754 dg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
+|+|||+|+.||.|.||++++++....
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred CCcEEEecCCCCeeEeccccchheeEe
Confidence 999999999999999999998765433
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=3.2e-29 Score=262.25 Aligned_cols=284 Identities=19% Similarity=0.338 Sum_probs=246.3
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.|++|.+.|.||++.|...+|+||+.|++|+|||+.+++...++ .+|...+..+++++...++.+++.+..+
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rHpYlFs~gedk~V-- 217 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRHPYLFSAGEDKQV-- 217 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-----cchhheeeeeeecccCceEEEecCCCee--
Confidence 567899999999999999999999999999999999999987775 6888999999999999999999999888
Q ss_pred ecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+.|++. .+.++.+.||-..|.||+.+|. ..|++|+.|.++||||+++...+.++. |
T Consensus 218 ---------------------KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 218 ---------------------KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred ---------------------EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence 455553 4678889999999999999998 899999999999999999999999998 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..+|..+.+.| .+..+++|+.|++|++||+..++... ...|+..+.+++.+|....|++++.| .|+-|++..+..+.
T Consensus 277 ~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~ 354 (460)
T KOG0285|consen 277 TNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQ 354 (460)
T ss_pred CCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhh
Confidence 99999999999 55679999999999999999987655 55666899999999999999988866 68999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEE---Ee---ecCCcceEEEEEecCCCE
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKF---KG---FRNTNSQISASLTANGRY 757 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~---~~---~~~~~~v~sv~fspdg~~ 757 (927)
.+ .+|...|+++....|+ ++++|+..|.|.+||.... .+.. .. ......|.+.+|...|..
T Consensus 355 nl---------sgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~r 423 (460)
T KOG0285|consen 355 NL---------SGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSR 423 (460)
T ss_pred cc---------ccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCce
Confidence 64 4889999999999887 8999999999999994321 1111 11 123456788999999999
Q ss_pred EEEEECCCcEEEEECCC
Q 002407 758 VVSASEDSYVYVWKYEA 774 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s 774 (927)
|++|..|.+|++|.-..
T Consensus 424 lit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 424 LITGEADKTIKMYKEDE 440 (460)
T ss_pred EEeccCCcceEEEeccc
Confidence 99999999999998654
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=3.9e-29 Score=285.60 Aligned_cols=273 Identities=24% Similarity=0.376 Sum_probs=221.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.--...++|..|++|+.+||.|-.|..|++|.+...+. ..+..... ...+-....+
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl-~~lk~~~~---------------l~~~d~~sad-------- 430 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL-KKLKDASD---------------LSNIDTESAD-------- 430 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhh-ccccchhh---------------hccccccccc--------
Confidence 33445699999999999999999999999999975432 22110000 0000000000
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V 610 (927)
+. .............++.||.++|..+.|+|+ .+|+++|.|++||+|.+.+..++..+. |..+|
T Consensus 431 -------------~~-~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV 496 (707)
T KOG0263|consen 431 -------------VD-VDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV 496 (707)
T ss_pred -------------hh-hhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce
Confidence 00 001112233445568999999999999999 889999999999999999999999887 99999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
++++|+| .|-||++++.|++.++|.......+..+ .|-..|.|+.|+|+..|+++|+.|.+|++||+.++..+..+
T Consensus 497 wdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-- 573 (707)
T KOG0263|consen 497 WDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-- 573 (707)
T ss_pred eeEEecC-CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe--
Confidence 9999999 9999999999999999999887777644 55689999999999999999999999999999999988776
Q ss_pred ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 690 ~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
.+|..+|++++|+|.|. +|++|+.|+.|.|||... ++..+.+| ...|.++.|+.+|..||+|+.|.+|
T Consensus 574 -------~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 574 -------TGHKGPVTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred -------cCCCCceEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeE
Confidence 49999999999999887 899999999999999765 44445554 7889999999999999999999999
Q ss_pred EEEECCCCC
Q 002407 768 YVWKYEAES 776 (927)
Q Consensus 768 ~IWdl~s~~ 776 (927)
++||+....
T Consensus 644 ~lWD~~~~~ 652 (707)
T KOG0263|consen 644 RLWDLTKVI 652 (707)
T ss_pred EEEEchhhc
Confidence 999997643
No 25
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.6e-27 Score=266.20 Aligned_cols=422 Identities=16% Similarity=0.247 Sum_probs=313.7
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
..++..-.|.+||..++++.+.... ..-...|+|+.-+|+.-+||.|-.||.|+||+..+......+ .+|..
T Consensus 37 va~~a~E~vn~WdlRtge~~~~l~~---~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tf-----ngHK~ 108 (888)
T KOG0306|consen 37 VAVSALEQVNIWDLRTGEIEKKLIL---LKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITF-----NGHKA 108 (888)
T ss_pred EEEeccccEeEEeeecchhhhhhhh---hcccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeee-----ccccc
Confidence 3444555788999999977655432 223368999999999999999999999999999887655553 78999
Q ss_pred cEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC-CcEEE
Q 002407 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK-SQHLL 582 (927)
Q Consensus 505 ~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp-d~~L~ 582 (927)
.|..+.|...|..+++++.++.+ .+|++ .+.-+..++||.+.|+.+-|.. +..|+
T Consensus 109 AVt~l~fd~~G~rlaSGskDt~I-----------------------IvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lv 165 (888)
T KOG0306|consen 109 AVTTLKFDKIGTRLASGSKDTDI-----------------------IVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLV 165 (888)
T ss_pred ceEEEEEcccCceEeecCCCccE-----------------------EEEEeccceeeEEeecchHHHhHHhccCCCeEEE
Confidence 99999999999999999999887 45555 3456778999999999999998 48999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----------------C-----
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----------------R----- 640 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t----------------~----- 640 (927)
+.+.|+.|++||+.+..|..+.- |...|+.+++.+ +.+++++.|+.+++|++.. |
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq 242 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQ 242 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeec
Confidence 99999999999999999998775 999999999975 7899999999999999810 0
Q ss_pred --------------cE----------------------------------------------------------------
Q 002407 641 --------------QV---------------------------------------------------------------- 642 (927)
Q Consensus 641 --------------~~---------------------------------------------------------------- 642 (927)
..
T Consensus 243 sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~k 322 (888)
T KOG0306|consen 243 SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAK 322 (888)
T ss_pred cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhh
Confidence 00
Q ss_pred --------------------------------------------EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 643 --------------------------------------------VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 643 --------------------------------------------v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
+....|...|.+++++.+...+++| ..+.|+||+.
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~ 401 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNR 401 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEc
Confidence 0001223456777777776555554 4678999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCC
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
.+.+++.++. ...+.+..|.|.+. ++++|...|.+.+||.. .+..... .|.+.+++++.+||++
T Consensus 402 ~t~kciRTi~-----------~~y~l~~~Fvpgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~--AHdgaIWsi~~~pD~~ 467 (888)
T KOG0306|consen 402 DTLKCIRTIT-----------CGYILASKFVPGDR-YIVLGTKNGELQVFDLASASLVETIR--AHDGAIWSISLSPDNK 467 (888)
T ss_pred cCcceeEEec-----------cccEEEEEecCCCc-eEEEeccCCceEEEEeehhhhhhhhh--ccccceeeeeecCCCC
Confidence 9999988753 23788999999765 89999999999999954 3444444 4688899999999999
Q ss_pred EEEEEECCCcEEEEECCCCCC-cccc-cccceeee-eeeecCCCeEEEEecCCceeEEeecCCceeeccc--------cC
Q 002407 757 YVVSASEDSYVYVWKYEAESR-PSRS-KSITVTHS-YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFST--------AN 825 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~-~~~~-~~~~~~~~-~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~--------~~ 825 (927)
.+++|+.|.+|++|++.-... +... +-....+. ...+..+-..+.++.+|....+..-+..+..+.. ..
T Consensus 468 g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 468 GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY 547 (888)
T ss_pred ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence 999999999999999864321 2111 11111111 1112222233444555555555555554433322 23
Q ss_pred CCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCC
Q 002407 826 HPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAW 902 (927)
Q Consensus 826 ~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~d 902 (927)
+|.+|+. .|..|||+++|++++ .|+.+++|..+-.-. ..+|+..+.. +.|-|.
T Consensus 548 GHkLPV~------------smDIS~DSklivTgS----ADKnVKiWGLdFGDCHKS~fAHdDSvm~--------V~F~P~ 603 (888)
T KOG0306|consen 548 GHKLPVL------------SMDISPDSKLIVTGS----ADKNVKIWGLDFGDCHKSFFAHDDSVMS--------VQFLPK 603 (888)
T ss_pred cccccee------------EEeccCCcCeEEecc----CCCceEEeccccchhhhhhhcccCceeE--------EEEccc
Confidence 5555554 355899999999987 999999999763321 3456665554 578899
Q ss_pred CCEEEEEcCCCcEEEee
Q 002407 903 GMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 903 G~vLvTgs~DG~IrvW~ 919 (927)
.+.+.|+|.||.||-|+
T Consensus 604 ~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWD 620 (888)
T ss_pred ceeEEEecCcceEEeec
Confidence 99999999999999995
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=246.74 Aligned_cols=267 Identities=19% Similarity=0.303 Sum_probs=210.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--E-EeccCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHS-DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--V-DWNDLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~-~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v-~~~~~~~~V~s 654 (927)
-+|++++.|.+||+|...+|.|..++.|. ..|+.+...| ++++|++++. ..|++||++++.. + .+..+...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 36899999999999999999999999964 6899999999 9988888875 6799999988643 3 45556689999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
+.|..+|+++++|+.||+++|||++...+...+ .+..+|+++..+|+.. .|+++..+|.|+|||+....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~----------~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY----------QHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhc----------cCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCc
Confidence 999999999999999999999999986555443 5679999999999765 89999999999999976653
Q ss_pred EEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEee
Q 002407 735 HKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGL 813 (927)
Q Consensus 735 ~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~ 813 (927)
..- .......++.++...|||.+|+.+...|+.++|++-+.........+. .
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~------k--------------------- 210 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH------K--------------------- 210 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh------h---------------------
Confidence 332 223456789999999999999999999999999998733222211110 0
Q ss_pred cCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc----ccccCCCceec
Q 002407 814 QDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL----TARNRSPRTSL 889 (927)
Q Consensus 814 ~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~----~~~~~s~v~s~ 889 (927)
+...+.+ +..+.||||+++||+.+ .|+++++|..+.+.. +.+|+.-+-
T Consensus 211 -------~~ah~~~---------------il~C~lSPd~k~lat~s----sdktv~iwn~~~~~kle~~l~gh~rWvW-- 262 (311)
T KOG0315|consen 211 -------FQAHNGH---------------ILRCLLSPDVKYLATCS----SDKTVKIWNTDDFFKLELVLTGHQRWVW-- 262 (311)
T ss_pred -------eecccce---------------EEEEEECCCCcEEEeec----CCceEEEEecCCceeeEEEeecCCceEE--
Confidence 1111111 22244899999999987 899999999986611 233432211
Q ss_pred ccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 890 DISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 890 ~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
.++||.||+|||||+.|+++|+|.
T Consensus 263 ------dc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 263 ------DCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred ------eeeeccCccEEEecCCCCceeecc
Confidence 479999999999999999999998
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.8e-29 Score=268.46 Aligned_cols=281 Identities=17% Similarity=0.255 Sum_probs=242.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
+.+|..|.|.|+|+.|++|+..|.+.+|+...... +.....|...|.++.|++++..++++..++.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-----EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~i-------- 162 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-----ETILQAHDSPVRTMKWSHNGTWMISGDKGGMI-------- 162 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH-----HHHhhhhcccceeEEEccCCCEEEEcCCCceE--------
Confidence 45799999999999999999999999999743321 12245678999999999999999999999888
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCC-CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEE
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTC 612 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~ 612 (927)
++|...-..+..+.+|. ..|.+++|+|+ ..+++++.|++|+|||....+....+. |.-.|.+
T Consensus 163 ---------------KyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 163 ---------------KYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred ---------------EecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 55555666666777766 89999999997 889999999999999999887776666 9999999
Q ss_pred EEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 613 IQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 613 v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
++|+| ...+|++++.|..|++||.+++.++. ...|+..|..+.|+|++++|++++.|..|++||+++.+.+..+
T Consensus 228 vdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~---- 302 (464)
T KOG0284|consen 228 VDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY---- 302 (464)
T ss_pred eccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh----
Confidence 99999 88899999999999999999999886 5566789999999999999999999999999999966655554
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
++|...|+++.|+|-...+|.+++.||.|..|... +.-.....+.|...|.+++|+|=|.+|++|+.|.++++|
T Consensus 303 -----r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 303 -----RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred -----hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 58999999999999988899999999999999965 222223345678899999999999999999999999999
Q ss_pred ECCC
Q 002407 771 KYEA 774 (927)
Q Consensus 771 dl~s 774 (927)
.-..
T Consensus 378 ~r~r 381 (464)
T KOG0284|consen 378 TRNR 381 (464)
T ss_pred ccCC
Confidence 7654
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=1.5e-28 Score=280.88 Aligned_cols=231 Identities=26% Similarity=0.470 Sum_probs=204.1
Q ss_pred CeEEEccCceEEEEeccCcccccce--------------------------eeeeEeecCCCCEEEEEEcCCCCEEEEEe
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTAL--------------------------YKCQEIQAHNGSIWSIKFSLDGRYLASAG 475 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l--------------------------~~~q~L~gH~~~I~~vafSpdG~~LaSgs 475 (927)
..++.|-.+..|++|....+.+..+ ...++|.||.++|..+.|+|+.++|++++
T Consensus 391 smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScS 470 (707)
T KOG0263|consen 391 SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCS 470 (707)
T ss_pred chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeecc
Confidence 3678899999999998875332211 12356899999999999999999999999
Q ss_pred CCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec
Q 002407 476 EDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL 555 (927)
Q Consensus 476 ~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 555 (927)
+|++||+|.+.+..
T Consensus 471 ED~svRLWsl~t~s------------------------------------------------------------------ 484 (707)
T KOG0263|consen 471 EDSSVRLWSLDTWS------------------------------------------------------------------ 484 (707)
T ss_pred CCcceeeeecccce------------------------------------------------------------------
Confidence 99999999986542
Q ss_pred CCCceEEEccCCCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 556 SDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 556 s~k~i~~l~gH~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
.+..++||..+|+++.|+|-+ +++|++.|++.++|.....+++++|. |-..|.|+.|+| +.+|+++|+.|.+|+
T Consensus 485 ---~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVR 560 (707)
T KOG0263|consen 485 ---CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVR 560 (707)
T ss_pred ---eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEE
Confidence 233567999999999999985 59999999999999999999999987 999999999999 999999999999999
Q ss_pred EEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 634 IWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 634 IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+||+.+|..+.. .+|...|++++|+|+|++|++|+.||.|.|||+.++.++..+ .+|.+.|+++.|+.+|
T Consensus 561 lWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l---------~~Ht~ti~SlsFS~dg 631 (707)
T KOG0263|consen 561 LWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL---------KGHTGTIYSLSFSRDG 631 (707)
T ss_pred EEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh---------hcccCceeEEEEecCC
Confidence 999999998875 466689999999999999999999999999999999888765 4899999999999998
Q ss_pred CcEEEEEECCCcEEEEECCc
Q 002407 713 SSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~ 732 (927)
. +|++++.|.+|++||..+
T Consensus 632 ~-vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 632 N-VLASGGADNSVRLWDLTK 650 (707)
T ss_pred C-EEEecCCCCeEEEEEchh
Confidence 7 999999999999999543
No 29
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.7e-28 Score=265.82 Aligned_cols=289 Identities=17% Similarity=0.245 Sum_probs=241.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.|..|...|.+|.|+|...+++++-..|.|.||+.++...+..+. -...+|..+.|-..-..++++.++..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-----V~~~PvRa~kfiaRknWiv~GsDD~~I-- 79 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-----VSEVPVRAAKFIARKNWIVTGSDDMQI-- 79 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----ecccchhhheeeeccceEEEecCCceE--
Confidence 3456699999999999999999999999999999999988777763 233566677777777888888888877
Q ss_pred ecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEEEe-
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS- 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~~~- 605 (927)
.+|.. +...+..|..|.+-|.+|+.+|. .+++|+|.|-+|++||.+.. .|.++|.
T Consensus 80 ---------------------rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG 138 (794)
T KOG0276|consen 80 ---------------------RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG 138 (794)
T ss_pred ---------------------EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence 44444 45778899999999999999998 89999999999999999865 6778887
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCC--CEEEEEECCCeEEEEECCCCe
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDG--QGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg--~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
|+..|.+|+|+|.|.+.|++++.|++|+||.+.+..+.. +..|...|++++|-+-| .+|++|+.|.+|+|||.++..
T Consensus 139 H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~ 218 (794)
T KOG0276|consen 139 HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS 218 (794)
T ss_pred cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH
Confidence 999999999999999999999999999999998876554 45677899999998844 699999999999999999999
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
+++++ .+|...|..+.|+|.-+ ++++|+.||+++||+..+....-...-....+++++-.+.+..++.|.
T Consensus 219 CV~TL---------eGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 219 CVQTL---------EGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred HHHHh---------hcccccceEEEecCCCc-EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence 98876 48999999999999887 899999999999999654433222222356788888888888888888
Q ss_pred CCCcEEEEECCCCCC
Q 002407 763 EDSYVYVWKYEAESR 777 (927)
Q Consensus 763 ~Dg~I~IWdl~s~~~ 777 (927)
+.|.| +..+-.+++
T Consensus 289 Deg~i-~v~lgreeP 302 (794)
T KOG0276|consen 289 DEGSV-TVKLGREEP 302 (794)
T ss_pred cCCcE-EEEccCCCC
Confidence 77755 445555443
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=249.60 Aligned_cols=314 Identities=17% Similarity=0.214 Sum_probs=266.3
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
+.+.+....++++|..+-+-.+|+..++++. -++.+|+.+|+|+.|+.||.|||||+.+|.|+||++.++.....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~ 143 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK 143 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE
Confidence 4444446667889999999999999988843 45689999999999999999999999999999999999987776
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCCCCEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLD 572 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~ 572 (927)
+. .....+.-+.|.|.+..++++..++.+. +|.+.. ...+.+.||..++++
T Consensus 144 ~~-----~e~~dieWl~WHp~a~illAG~~DGsvW-----------------------mw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 144 LD-----QEVEDIEWLKWHPRAHILLAGSTDGSVW-----------------------MWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred ee-----cccCceEEEEecccccEEEeecCCCcEE-----------------------EEECCCcceeeEecCCCCCccc
Confidence 63 3455677789999999999999998874 444444 567788999999999
Q ss_pred EEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-
Q 002407 573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL- 648 (927)
Q Consensus 573 l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~- 648 (927)
=.|.|+ ++++++..||+|++||..+++++..+. ......++.++. .+..++.|..++.+++-+..+++++.....
T Consensus 196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~ 274 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNGT 274 (399)
T ss_pred ccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCCC
Confidence 999999 779999999999999999999998887 445678899998 899999999999999999999988865442
Q ss_pred --------CC---cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 649 --------HE---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 649 --------~~---~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
.. .|..+.++..=.+.|+|+.||+|.|||+...++.... .|...|+.+.|.+ .. +|+
T Consensus 275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c----------~he~~V~~l~w~~-t~-~l~ 342 (399)
T KOG0296|consen 275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC----------EHEDGVTKLKWLN-TD-YLL 342 (399)
T ss_pred CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec----------cCCCceEEEEEcC-cc-hhe
Confidence 22 3444455556678999999999999999887766553 6788899999999 33 899
Q ss_pred EEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 718 VTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+++.+|.|++||.+....++....|...|..++++|++++++|++.|++.+||++.
T Consensus 343 t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 343 TACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999998888888888888999999999999999999999999999874
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=4e-27 Score=293.65 Aligned_cols=315 Identities=15% Similarity=0.177 Sum_probs=239.7
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee--cccccCccccEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL--EKQEDGHLNMLL 507 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~--~~~~~~~~~~v~ 507 (927)
.|-+++|+..............+..|.+.|++++|+|+|++||||+.|++|+||++.......... ..........+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 455666766655554444455677899999999999999999999999999999986421110000 000011234566
Q ss_pred EEccCCC-CCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecC-C-cEEEE
Q 002407 508 LANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSK-S-QHLLS 583 (927)
Q Consensus 508 ~v~~spd-~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~sp-d-~~L~S 583 (927)
.+.|.+. +..+++++.++.+ .+|++. .+.+..+.+|.+.|++++|+| + .+|++
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v-----------------------~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVV-----------------------QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeE-----------------------EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE
Confidence 7788764 6788888888877 455543 466778899999999999997 4 68999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEEeccCCCcEEEEEECCCC
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~~~V~sla~spdg 661 (927)
|+.|++|++||+.++.++..+.+...|.++.|++.++.+|++|+.|+.|++||+++.+ ......|...|.++.|. ++
T Consensus 594 gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~ 672 (793)
T PLN00181 594 GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS 672 (793)
T ss_pred EcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence 9999999999999999998888778899999976579999999999999999998765 23456677899999997 78
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEE-
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFK- 738 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~- 738 (927)
.+|++++.|+.|+|||+......... .......+|...+..++|+|++. +|++|+.|+.|++|+..... ..+.
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~---~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~ 748 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINE---TPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKF 748 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCC---cceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEec
Confidence 89999999999999999753210000 00111247888999999999876 89999999999999954321 1111
Q ss_pred ----------eecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 739 ----------GFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 739 ----------~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
...+...|.+++|++++.+|++|+.||.|+||++
T Consensus 749 ~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1223456899999999999999999999999996
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-28 Score=254.91 Aligned_cols=285 Identities=24% Similarity=0.361 Sum_probs=251.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+.+|..+|+.+.|+|+-..++++++|.+|++||..+++....+ .+|...+..+.+...|.+++++..+-.+.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-----rGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-----RGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-----hccccceeEEEEecCccEEEecCCccchh
Confidence 3567889999999999999999999999999999999999875554 68888899999999999999987776542
Q ss_pred eecccccccccccccCcccccceEeecC--CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALS--DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s--~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
+|+.. ...+..+.+|...|.++.|-|. .+|++++.|.+|+.|++.++.++++|.
T Consensus 176 -----------------------LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 176 -----------------------LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred -----------------------heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence 33332 2556678899999999999997 889999999999999999999999998
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCC---------------CCEEEEEE
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPD---------------GQGALVGS 668 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spd---------------g~~l~tgs 668 (927)
|...|..++.+. |+.++++++.|.+|++|-+.++++.. ...|+..|.+++|-|. ++++++++
T Consensus 233 ~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred CchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence 999999999998 99999999999999999999987665 4456678889988653 36899999
Q ss_pred CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEE
Q 002407 669 YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQIS 748 (927)
Q Consensus 669 ~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~s 748 (927)
.|++|++||+.++.++.++ .+|...|..++|+|.|+ +|+++..|+++++||.....+......+...+++
T Consensus 312 rDktIk~wdv~tg~cL~tL---------~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGMCLFTL---------VGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred ccceEEEEeccCCeEEEEE---------ecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 9999999999999998886 49999999999999887 8999999999999998777666666667788999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+.|+.+..++++|+-|..+++|..
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999975
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.5e-28 Score=239.26 Aligned_cols=250 Identities=25% Similarity=0.477 Sum_probs=219.9
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.|..|+++|..+.|+-||+|.+|+|.|.+|++|+...+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---------------------------------------- 49 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---------------------------------------- 49 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------------------------------
Confidence 3567889999999999999999999999999999986543
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
..++++.+|...|.+++.+.| ..|++|+.|+.|.+||+.+|+.++.|. |
T Consensus 50 -----------------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 50 -----------------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred -----------------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc
Confidence 345677899999999999887 789999999999999999999999998 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
...|+.++|+. +...+++|+.|.++++||.++. ++++.+ ...+.|.++.+. +..|++|+.||+++.||++.+.+
T Consensus 101 ~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 101 LAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred cceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee
Confidence 99999999998 8999999999999999999875 455544 345788888876 56799999999999999999987
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE--CCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
... ....+|+++.|+++++ ..++++.|++|++.| ..+++..+++|.+...-..++++....++++|
T Consensus 178 ~sD-----------y~g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 178 SSD-----------YFGHPITSVSFSKDGN-CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred ehh-----------hcCCcceeEEecCCCC-EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 654 4567899999999987 899999999999999 56788899999998888899999999999999
Q ss_pred ECCCcEEEEECCCCCCccccc
Q 002407 762 SEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~ 782 (927)
++||.|++||+..........
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred cCCceEEEEEeccceeeeeec
Confidence 999999999999876655443
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=256.82 Aligned_cols=291 Identities=25% Similarity=0.406 Sum_probs=245.1
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
+..|.|+.|++.||-+.||++|+||||++.|.+..||++.....
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------------------------------------ 258 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------------------------------------ 258 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------------------------------------
Confidence 34467899999999999999999999999999999999753321
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
-+...++.+|..+|..+.|+|| .+|++|+.|..+.+||+.++.+...+.
T Consensus 259 ------------------------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 259 ------------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred ------------------------------eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc
Confidence 1445678899999999999998 889999999999999999999999998
Q ss_pred cC--CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 606 HS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+. ..+.+++|.| |+..|++|+.|++|..||++....-.|.... ..|.++++++||+++++.+.|..|++|+..+..
T Consensus 309 ~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~ 387 (519)
T KOG0293|consen 309 SGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV 387 (519)
T ss_pred cCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh
Confidence 54 8999999999 9999999999999999999887776676665 469999999999999999999999999987654
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEec-CCCEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTA-NGRYVV 759 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fsp-dg~~La 759 (927)
.... .....+|++++.+.++. ++++.-.+..|++||.. .++.++.++.....++.-||-- +..+++
T Consensus 388 dr~l----------ise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia 456 (519)
T KOG0293|consen 388 DRGL----------ISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA 456 (519)
T ss_pred hhcc----------ccccCceeEEEEcCCCc-EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence 4322 25567899999999987 78888899999999975 4567788888778888888865 458999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCe--EEEEecCCceeEEeecC
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDV--SVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v--~vavs~~g~~~i~~~~d 815 (927)
+|++|+.||||+..++.....+.++.....+..+++.+- .+..+-+|++++|+..+
T Consensus 457 SGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 457 SGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999999999988888887777777777653 33344457777777543
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.6e-27 Score=272.89 Aligned_cols=284 Identities=25% Similarity=0.434 Sum_probs=238.7
Q ss_pred eEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc--ccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 450 QEIQAH-NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 450 q~L~gH-~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
+.+.+| ...|.|+.|+++|++|++++.|+.+++|++.... ...+ ..+|...|..++|+|++.+++++..+..
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-----l~~h~~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE-----LSGHTRGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc-----ccccccceeeeEECCCCcEEEEecCCce
Confidence 344444 8899999999999999999999999999996665 2222 2688899999999999999999999988
Q ss_pred eeeecccccccccccccCcccccceEeec-CC-CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SD-KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~-k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
+ ++|++ .. ..+.++.+|...|++++|+|+ .++++|+.|++|+|||+.+++++..
T Consensus 227 i-----------------------riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 227 L-----------------------RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred E-----------------------EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 8 45555 32 678899999999999999999 6899999999999999999999999
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEE-eccCCC--cEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVD-WNDLHE--MVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~-~~~~~~--~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
+. |...|++++|++ ++++|++++.|+.|+|||+.++. ++. ...+.. .++.++|+|+++++++++.|+.+++||
T Consensus 284 l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~ 362 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWD 362 (456)
T ss_pred eeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEE
Confidence 98 999999999999 99999999999999999999998 333 333333 589999999999999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCC---CeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEe
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQR---KITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~---~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fs 752 (927)
+..+.....+. .|.. .+.+..+.+.+. ++++++.|+.|++||.... +..+.++. ...+..+.++
T Consensus 363 l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~ 431 (456)
T KOG0266|consen 363 LRSGKSVGTYT---------GHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSH 431 (456)
T ss_pred ccCCcceeeec---------ccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccC
Confidence 99888777653 3443 344445566665 8999999999999997644 34444443 6778899999
Q ss_pred cCCCEEEEEE--CCCcEEEEECC
Q 002407 753 ANGRYVVSAS--EDSYVYVWKYE 773 (927)
Q Consensus 753 pdg~~Lasgs--~Dg~I~IWdl~ 773 (927)
+...++++++ .|+.|++|...
T Consensus 432 ~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcCeeeecCcCCCceEEEecCC
Confidence 9999999998 78999999864
No 36
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.2e-26 Score=250.87 Aligned_cols=309 Identities=18% Similarity=0.280 Sum_probs=257.0
Q ss_pred eEEEccCceEEEEeccCc------ccccceeeeeEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 423 VSFHGQERVRVRQYGKSC------KDLTALYKCQEIQAH----NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s------~~l~~l~~~q~L~gH----~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
++..|..+..-++|++.. .++. +..+..+-++ +..|++++|+.+|.+||+|+.||.++||+... ..+.
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~-lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~ 270 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLV-LRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLIS 270 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhh-hhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhh
Confidence 567788888888998764 1111 1111111222 35799999999999999999999999999754 3444
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEE
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVL 571 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~ 571 (927)
.+ ..|..+|+.+.|+..+.+|++++.++.+ .+|+. ++...+.|.-|..+-.
T Consensus 271 tl-----~~HkgPI~slKWnk~G~yilS~~vD~tt-----------------------ilwd~~~g~~~q~f~~~s~~~l 322 (524)
T KOG0273|consen 271 TL-----GQHKGPIFSLKWNKKGTYILSGGVDGTT-----------------------ILWDAHTGTVKQQFEFHSAPAL 322 (524)
T ss_pred hh-----hccCCceEEEEEcCCCCEEEeccCCccE-----------------------EEEeccCceEEEeeeeccCCcc
Confidence 43 6788999999999999999999988877 34433 5566777888988889
Q ss_pred EEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCC
Q 002407 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH 649 (927)
Q Consensus 572 ~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~ 649 (927)
++.|-.+..+++++.|+.|+|+.+....++.++. |.+.|.+|.|+| .+.+|++++.|++++||......... +..|.
T Consensus 323 DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 323 DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred ceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 9999988999999999999999999999998887 999999999999 99999999999999999987766554 66677
Q ss_pred CcEEEEEECCCC---------CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 650 EMVTAACYTPDG---------QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 650 ~~V~sla~spdg---------~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
..|..+.|+|.| ..+++++.|++|++||+..+.++..+ ..|+.+|++++|+|++. ++++|+
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---------~kH~~pVysvafS~~g~-ylAsGs 471 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---------MKHQEPVYSVAFSPNGR-YLASGS 471 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---------ccCCCceEEEEecCCCc-EEEecC
Confidence 899999999965 46899999999999999999998885 48999999999999987 899999
Q ss_pred CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 721 ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 721 ~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.||.|.||+.... ..++.......|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 472 ~dg~V~iws~~~~-~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTG-KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccch-heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999996432 233444456779999999999999999999999999875
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.3e-28 Score=252.47 Aligned_cols=268 Identities=18% Similarity=0.349 Sum_probs=220.0
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
+-|.......+++|..+.+|++|++.+. ++.+.|.||+|+|.|+.| |.+.|++|+.|.+|+|||+.+++.+.+
T Consensus 200 VYClQYDD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 200 VYCLQYDDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred eEEEEecchhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhH
Confidence 4444555566789999999999997644 445677899999999999 556999999999999999998875544
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+-+|...|..+
T Consensus 273 ---------------------------------------------------------------------lihHceaVLhl 283 (499)
T KOG0281|consen 273 ---------------------------------------------------------------------LIHHCEAVLHL 283 (499)
T ss_pred ---------------------------------------------------------------------HhhhcceeEEE
Confidence 34689999999
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEE---E-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cC
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKI---F-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DL 648 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~---~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~ 648 (927)
.|+ ++++++++.|.+|.+||+.....+.. + +|...|+.+.| +.++|++++.|.+|++|++.+++.+..+ .|
T Consensus 284 rf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~kyIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 284 RFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---ccceEEEecCCceEEEEeccceeeehhhhcc
Confidence 996 48999999999999999987653322 2 39999999999 4579999999999999999999998755 45
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
+..|.|+.+ .++++++|+.|.+|++||+..|.++..+ .+|..-|.++.|... .+++|+.||+|+||
T Consensus 360 kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL---------eGHEeLvRciRFd~k---rIVSGaYDGkikvW 425 (499)
T KOG0281|consen 360 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---------EGHEELVRCIRFDNK---RIVSGAYDGKIKVW 425 (499)
T ss_pred cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH---------hchHHhhhheeecCc---eeeeccccceEEEE
Confidence 567877766 4899999999999999999999988776 489999999999763 79999999999999
Q ss_pred ECCcce---------EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 729 DGIDLV---------HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 729 D~~~~~---------~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|..... .......+.+.|..+.| |...|++++.|.+|.|||+.++..
T Consensus 426 dl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 426 DLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred ecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 954322 22233456677888887 456799999999999999988643
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.3e-26 Score=259.14 Aligned_cols=275 Identities=24% Similarity=0.396 Sum_probs=228.6
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.....++.++-..|.|++|+.+-..+. ..+..|.|+|..|+|+|++.+++|||.|-.|+||+..+.+
T Consensus 18 HP~rPwILtslHsG~IQlWDYRM~tli-----~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-------- 84 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSGVIQLWDYRMGTLI-----DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-------- 84 (1202)
T ss_pred CCCCCEEEEeecCceeeeehhhhhhHH-----hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce--------
Confidence 445567788889999999997655443 4568999999999999999999999999999999986644
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
++.++.||.+-|..+.|++
T Consensus 85 -------------------------------------------------------------clftL~GHlDYVRt~~FHh 103 (1202)
T KOG0292|consen 85 -------------------------------------------------------------CLFTLLGHLDYVRTVFFHH 103 (1202)
T ss_pred -------------------------------------------------------------ehhhhccccceeEEeeccC
Confidence 3445678999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--------------
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-------------- 641 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-------------- 641 (927)
. ..|+++|.|.||+||+..+++++.++. |..+|.|.+|+| ...++++++.|.+|+|||+..-+
T Consensus 104 eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~ 182 (1202)
T KOG0292|consen 104 EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMR 182 (1202)
T ss_pred CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhh
Confidence 8 999999999999999999999999998 999999999999 89999999999999999984311
Q ss_pred --------------EE-E-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 642 --------------VV-D-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 642 --------------~v-~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
++ . ..+|...|+.++|+|.-..|++|+.|..|++|.+...+....-. .++|.+.|.+
T Consensus 183 ~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt-------crgH~nnVss 255 (1202)
T KOG0292|consen 183 GQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT-------CRGHYNNVSS 255 (1202)
T ss_pred ccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh-------hhcccCCcce
Confidence 11 1 23455689999999999999999999999999998766543322 2699999999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+.|+|... +|++.+.|++|+|||..+.............-+.++-+|..+++++|- |+-+.||.++...
T Consensus 256 vlfhp~q~-lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleREr 324 (1202)
T KOG0292|consen 256 VLFHPHQD-LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERER 324 (1202)
T ss_pred EEecCccc-eeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccC
Confidence 99999755 899999999999999755444433334456678889999999888775 6668899998644
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1.2e-27 Score=259.82 Aligned_cols=291 Identities=23% Similarity=0.335 Sum_probs=235.1
Q ss_pred CCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCC-CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCc
Q 002407 556 SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 556 s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
..+.++++.||+..|+++.|.|. .+|+++++|+.|+||++.. +.++++|. |..+|..++|++ ++..|++++.|+.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRF 281 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeeccee
Confidence 34778899999999999999994 6789999999999999986 88999997 999999999999 9999999999999
Q ss_pred EEEEeCCCCcEEEeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|++||+++|+++..+.....++++.|+|++ +.|++|+.|+.|+.||++++++++++. .|.+.|..+.|.+
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---------~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---------RHLGAILDITFVD 352 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------hhhhheeeeEEcc
Confidence 999999999999999999999999999998 889999999999999999999888764 7889999999999
Q ss_pred CCCcEEEEEECCCcEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
++. .+++++.|+.++||+..... .++..........++..+|++++++.-+.|+.|.||.+...-+....+..
T Consensus 353 ~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f----- 426 (503)
T KOG0282|consen 353 EGR-RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF----- 426 (503)
T ss_pred CCc-eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhh-----
Confidence 987 89999999999999954322 22333333445668899999999999999999999997664443322111
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
+.+... .....+.|||||++|+++. .++.+-
T Consensus 427 -eGh~va--------------------------------------------Gys~~v~fSpDG~~l~SGd----sdG~v~ 457 (503)
T KOG0282|consen 427 -EGHSVA--------------------------------------------GYSCQVDFSPDGRTLCSGD----SDGKVN 457 (503)
T ss_pred -cceecc--------------------------------------------CceeeEEEcCCCCeEEeec----CCccEE
Confidence 101000 1112245999999999987 778888
Q ss_pred ccCchh--hcc-ccccCCCceecccCCCCCcccCCC-CCEEEEEcCCCcEEEee
Q 002407 870 TWPEEK--LVL-TARNRSPRTSLDISNGISSSISAW-GMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 870 ~W~~e~--l~~-~~~~~s~v~s~~~~~~~~~a~S~d-G~vLvTgs~DG~IrvW~ 919 (927)
+|+-.. +.. ...|..++.. +.|+|- -..+||+|+||.|++|.
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~--------v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIG--------VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEE--------EEecCCCcceeEecccCceeEecC
Confidence 887653 221 3456555554 456664 35789999999999995
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2e-25 Score=227.19 Aligned_cols=276 Identities=21% Similarity=0.282 Sum_probs=216.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeee-Ee-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQ-EI-QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q-~L-~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.++++++.+.+|++|+....+ .+.++ .| .+|+..|+.++|+|.|+|||+|+.|.++.||.-..++... ....
T Consensus 28 ~ilAscg~Dk~vriw~~~~~~---s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec---v~~l 101 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSGD---SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC---VATL 101 (312)
T ss_pred eEEEeecCCceEEEEecCCCC---cEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE---Eeee
Confidence 357888889999999877421 13333 22 4899999999999999999999999999999876543222 1224
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+|.+-|.+++|+++|.+||+++.+..+.++.... .-.-..+..|++|...|..+.|+|.
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de-------------------ddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE-------------------DDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC-------------------CCcEEEEeeeccccccccEEEEcCCc
Confidence 68899999999999999999999988775443221 1122566788999999999999998
Q ss_pred cEEEEEeCCCcEEEEeCC---CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLS---SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~---t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~s 654 (927)
.+|+++++|.+|++|+-. .-++++++. |+..|.+++|+| .|..|++++.|++|+||-..+. -...+...+..
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC---cchhcccceEe
Confidence 899999999999999876 335777776 888999999999 9999999999999999986522 12234467888
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+.|. ...|++++.|+.|++|.......... +.+..+....|...|++++|.|....+|++++.||.|++|..
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~--~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESDSPDEPS--WNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecCCCCCch--HHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 9998 45799999999999998764322222 122223335788899999999976779999999999999974
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.4e-25 Score=234.65 Aligned_cols=309 Identities=18% Similarity=0.254 Sum_probs=249.6
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++|..|+++|.+++.+|+.+++||||.|....||++.+++...++ .+|...|.++.|+.++.+|+++..++.+..
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-----tgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-----cCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 456889999999999999999999999999999999999966664 789999999999999999999999998843
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+... ++.....+......|.-|.|+|. ..|+.|+.||.|.+|.+..+...+++. |.
T Consensus 133 ~~~s----------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~ 190 (399)
T KOG0296|consen 133 FKVS----------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN 190 (399)
T ss_pred EEcc----------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC
Confidence 3322 23344455556678888999998 779999999999999999977777776 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC--CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~--~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
.++++=.|.| +|+.++++..||+|++|++.+++++..... +...+++.++..+..++.|..++.+++-+..+++.+.
T Consensus 191 ~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 191 SPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999 999999999999999999999988764442 3467888999999999999999999999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSS--SEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~--~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
...- ........+...+.++.+.|-.. .+.++|+-||+|.|||.......... .+...|+.+.|-+ ..+|++++.
T Consensus 270 ~~n~-~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 270 CNNG-TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred ecCC-CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeecc
Confidence 5431 11111234555566666655432 16788999999999997654443333 3567799999998 789999999
Q ss_pred CCcEEEEECCCCCCcccccccceeee
Q 002407 764 DSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 764 Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
+|.|++||.+++.......++.....
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred CceEEeeeccccceEEEEecCchhee
Confidence 99999999999988777666554443
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.3e-26 Score=244.75 Aligned_cols=290 Identities=22% Similarity=0.313 Sum_probs=234.2
Q ss_pred eeeccccCCCCCCcccCccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC
Q 002407 388 SSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD 467 (927)
Q Consensus 388 ~~~~g~k~~~~~~~~~~~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd 467 (927)
.++..|.+ ..|..+.+..|+.++++..|...++|-...++.++++ ++|.+|..+|..|.||||
T Consensus 218 qil~~htd----EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------------~tlvgh~~~V~yi~wSPD 280 (519)
T KOG0293|consen 218 QILQDHTD----EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-------------KTLVGHSQPVSYIMWSPD 280 (519)
T ss_pred hhHhhCCC----cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee-------------eeeecccCceEEEEECCC
Confidence 34444544 4677778888888888888888777766666665443 678999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCccc
Q 002407 468 GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMV 547 (927)
Q Consensus 468 G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 547 (927)
.+||++|+.|..+++||+.++.....+.
T Consensus 281 dryLlaCg~~e~~~lwDv~tgd~~~~y~---------------------------------------------------- 308 (519)
T KOG0293|consen 281 DRYLLACGFDEVLSLWDVDTGDLRHLYP---------------------------------------------------- 308 (519)
T ss_pred CCeEEecCchHheeeccCCcchhhhhcc----------------------------------------------------
Confidence 9999999999999999999887544321
Q ss_pred ccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEE
Q 002407 548 VPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFI 624 (927)
Q Consensus 548 ~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~ 624 (927)
.+|...+.+++|.|| ..+++|+.|++|..||+..... .... ....|.+++..+ ||++++
T Consensus 309 ----------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~-Dgk~vl 370 (519)
T KOG0293|consen 309 ----------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITY-DGKYVL 370 (519)
T ss_pred ----------------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcC-CCcEEE
Confidence 124567899999999 5699999999999999986542 2222 446799999999 999999
Q ss_pred EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC--CC
Q 002407 625 SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ--RK 702 (927)
Q Consensus 625 sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~--~~ 702 (927)
+...|..|++|+..+.........+.+|++++++.+++++++.-.+..+++||+...+++.++. +|. ..
T Consensus 371 ~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~---------Ghkq~~f 441 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF---------GHKQGHF 441 (519)
T ss_pred EEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh---------cccccce
Confidence 9999999999999888777777888999999999999999999999999999999877776653 333 34
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|..-+|.-.+..++++|++|++|+||+.. +++..+.+| ...|.+++|+|.. .++|+|++||+|+||.....
T Consensus 442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 442 IIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 55556766665699999999999999954 455566654 6779999999965 57899999999999987653
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=4.9e-27 Score=242.41 Aligned_cols=290 Identities=21% Similarity=0.365 Sum_probs=234.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+.+.-+-|..|||||+||++|+.||.|.||++.+++....+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk------------------------------------- 252 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK------------------------------------- 252 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-------------------------------------
Confidence 3567788999999999999999999999999999887554431
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCc
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDY 609 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~ 609 (927)
.+....|..|.++|.|+.|+.| ..|++|+.||.|++|.+.+|+|++.|. |+..
T Consensus 253 ------------------------YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkG 308 (508)
T KOG0275|consen 253 ------------------------YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKG 308 (508)
T ss_pred ------------------------hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccC
Confidence 0112244568899999999999 889999999999999999999999997 9999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
|+|+.|+. |+..+++++.|.+++|.-+.+|+++. +.+|...|+.+.|++||.++++++.||+|++|+..+..+..++.
T Consensus 309 vt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 309 VTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred eeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhcc
Confidence 99999999 99999999999999999999999886 45566799999999999999999999999999999999988765
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEE-eecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFK-GFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
. .+...+|+.+...|.++..++++...++|+|.+... .+..+. +....+...+++++|.|.++.+.++|+.
T Consensus 388 ~-------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v 460 (508)
T KOG0275|consen 388 P-------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV 460 (508)
T ss_pred C-------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE
Confidence 3 356778999999999988999999999999999543 344443 3344566778899999999999999999
Q ss_pred EEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEE
Q 002407 767 VYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTW 811 (927)
Q Consensus 767 I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~ 811 (927)
+|.|.+.++........+.....-..+|+....+| .+-+|...+|
T Consensus 461 lYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 461 LYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred EEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 99999999876555433333333333444433333 3334444444
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=5.1e-27 Score=249.89 Aligned_cols=265 Identities=20% Similarity=0.317 Sum_probs=220.4
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+.+|+..|.+.+|+-.+=.+. ..+++|..+|++|.|+++|.+++||+.+|.|++|+..-... ..+ ...+.
T Consensus 111 Lltgs~SGEFtLWNg~~fnFE-----tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~----~ahh~ 180 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNGTSFNFE-----TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KII----QAHHA 180 (464)
T ss_pred eEeecccccEEEecCceeeHH-----HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHh----hHhhh
Confidence 466777788888875332222 23589999999999999999999999999999999754321 111 23445
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL 582 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~ 582 (927)
..|..++|+|....++++..++.+.++.. ...++...+.||.-.|.+++|+|. ++|+
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf----------------------~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDF----------------------RMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEec----------------------cCCchhheeccCCCCcceeccCCccceeE
Confidence 78999999999999999999998843322 234666778999999999999998 9999
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECC-
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTP- 659 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~sp- 659 (927)
+++.|..|++||.+++.|+.++. |...|..+.|+| ++++|++++.|..++++|+++.+-+. ...|+..+++++|+|
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 99999999999999999999887 999999999999 88999999999999999999655444 556889999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
...+|.+|+.||.|..|.+...+.+..+. .+|...|++++|+|-|- +|++|+.|.++++|.-
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~--------~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIP--------PAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCC--------cccccceeeeeccccce-eEeecCCCcceeeecc
Confidence 55688899999999999998555544433 58999999999999886 8899999999999973
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=1.1e-25 Score=235.90 Aligned_cols=302 Identities=15% Similarity=0.173 Sum_probs=250.8
Q ss_pred eecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
|-..-+..+.+.+|.+.|.|+++.|. ..|++|+.|++|+|||+.+++...++. |-..|..+++++ -..||++++.|+
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk 215 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDK 215 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCC
Confidence 33344667788999999999999997 789999999999999999999998888 999999999999 888999999999
Q ss_pred cEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 631 KVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 631 ~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.|+.||+...+++. ..+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+ .+|..+|..+.+.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---------~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---------SGHTNPVASVMCQ 286 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe---------cCCCCcceeEEee
Confidence 99999999999886 5666689999999999999999999999999999998888775 4899999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 710 PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
|-++ .+++++.|++|++||............+...+.+++.+|....+|+++.|. |+-|++..+.......++.....
T Consensus 287 ~~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 287 PTDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred cCCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceee
Confidence 9877 799999999999999887777777777888999999999999999999875 99999999887777666666677
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
......+++.+...-+|....|.-.++.-........++-.+.. -..+...+|-..|..|.++. .|++|+
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~s------EagI~as~fDktg~rlit~e----adKtIk 434 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLES------EAGIFASCFDKTGSRLITGE----ADKTIK 434 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCcccc------ccceeEEeecccCceEEecc----CCcceE
Confidence 77778888888887778887777655543333222222222211 12334456788888999977 899999
Q ss_pred ccCchhh
Q 002407 870 TWPEEKL 876 (927)
Q Consensus 870 ~W~~e~l 876 (927)
+|.+...
T Consensus 435 ~~keDe~ 441 (460)
T KOG0285|consen 435 MYKEDEH 441 (460)
T ss_pred EEecccc
Confidence 9987644
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.3e-25 Score=228.50 Aligned_cols=271 Identities=18% Similarity=0.266 Sum_probs=223.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+++|..+..|.+|+.... .. ..-.+++|.++|..+.|.+|++.|+++|.|.+|+.||+++++...
T Consensus 60 s~~aSgG~Dr~I~LWnv~gd-ce---N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r--------- 126 (338)
T KOG0265|consen 60 SCFASGGSDRAIVLWNVYGD-CE---NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR--------- 126 (338)
T ss_pred CeEeecCCcceEEEEecccc-cc---ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee---------
Confidence 45678888888888974322 11 223467999999999999999999999999999999998876443
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--c
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--Q 579 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~ 579 (927)
.+++|..-|+.+.-+.- .
T Consensus 127 ------------------------------------------------------------k~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 127 ------------------------------------------------------------KHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred ------------------------------------------------------------hhccccceeeecCccccCCe
Confidence 44578888888873332 4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEEC
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYT 658 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~s 658 (927)
++.+++.|++++|||+++..+++++...-+++++.|.. .+..+++|+.|+.|++||++...... ..+|.+.|+.+..+
T Consensus 147 lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls 225 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS 225 (338)
T ss_pred EEEecCCCceEEEEeecccchhhccccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEec
Confidence 68899999999999999999999999899999999998 88899999999999999999888776 45667899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeee----ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQ----KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~----~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
|+|.++++-+.|.++++||++.....+ .++-. ..........++|+|++. .+-+++.|..+++||.....
T Consensus 226 ~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~-----~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 226 RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH-----IHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred cCCCccccccccceEEEEEecccCCCCceEEEeecc-----hhhhhhhcceeeccCCCC-ccccccccceEEEeeccccc
Confidence 999999999999999999998644322 22210 112233456778999876 79999999999999987767
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..++...+...|.++.|+|...+|.+++.|.+|++=.+
T Consensus 300 ~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 300 ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 77777778999999999999999999999999997543
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=3.1e-24 Score=228.89 Aligned_cols=265 Identities=24% Similarity=0.445 Sum_probs=221.9
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..++.|.+|+...++ ....+.+|...|..+.|+|++++|++++.||.|++|++.+++....+ .
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-----~ 90 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE-----LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-----T 90 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC-----cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-----e
Confidence 4567778889999999987654 23556789999999999999999999999999999999987655554 2
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+...+.++.+.+++.+++++..++.+ .+|++. .+.+..+..|...|.++.|+|+
T Consensus 91 ~~~~~i~~~~~~~~~~~~~~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTI-----------------------KVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ccCCcEEEEEEcCCCCEEEEecCCCeE-----------------------EEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 445578889999998888887656665 344443 5667777889999999999997
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla 656 (927)
.++++++.|+.|++||+.+++.+..+. |...|.++.|+| +++.|++++.++.|++||+..++.+... .+...+.+++
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 226 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE
Confidence 556666669999999999888888776 777999999999 8888999999999999999988887766 6677999999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
|+|++.++++++.++.|++|++.+++....+. .|...|.+++|+|++. .|++++.|+.|++|+
T Consensus 227 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLS---------GHTNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc---------ccCCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 99998888888889999999999877666542 6777899999999876 899999999999996
No 48
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3e-25 Score=224.75 Aligned_cols=277 Identities=21% Similarity=0.301 Sum_probs=237.5
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+++++|...|.+|+|+.+|.+||+|+.|++++||++.......+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------ 57 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------ 57 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence 66789999999999999999999999999999999875532211
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~ 607 (927)
....+|.+.|-.++|+|. ..|++++.|++|++||++.++++..+...
T Consensus 58 -------------------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~ 106 (313)
T KOG1407|consen 58 -------------------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK 106 (313)
T ss_pred -------------------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc
Confidence 134689999999999986 78999999999999999999999998877
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..-.-+.|+| ++.+++.+..|..|.+.|.++.+++........+..++|+-++.+++.....|.|.|.....-+.+..+
T Consensus 107 ~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 107 GENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred CcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 7777899999 999999999999999999999999988888889999999988888888888899999988876666654
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
+.|.....|+.|+|+|+ ++++|+.|..+.+||..+++..-......-+|..++|+.||++||+|++|..|
T Consensus 186 ---------~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 186 ---------KAHPSNCICIEFDPDGR-YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ---------ccCCcceEEEEECCCCc-eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 48999999999999998 89999999999999998887776666778899999999999999999999999
Q ss_pred EEEECCCCCCcccccccceeeeeeeecCCCeEEEEecC
Q 002407 768 YVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWP 805 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~ 805 (927)
-|=+++++.+....+.. .......+|++...+|...+
T Consensus 256 DIA~vetGd~~~eI~~~-~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPCE-GPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred EeEecccCCeEEEeecc-CCceeEEecCCCceeeEEec
Confidence 99999998876554322 12233566776666666544
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.8e-24 Score=269.82 Aligned_cols=270 Identities=17% Similarity=0.276 Sum_probs=212.8
Q ss_pred CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC
Q 002407 477 DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (927)
Q Consensus 477 DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 556 (927)
+|.+++|+.........+.......+...|.+++|++++.++++++.++.+..+......... . ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~----~----------~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG----R----------DI 522 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc----c----------cc
Confidence 778999998876654444333445678889999999999999999999988665432110000 0 00
Q ss_pred CCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
..++..+. +...|.+++|++. .+|++++.|++|+|||+.+++.+..+. |...|++++|+|.++.+|++|+.|+.|+
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 01223333 3467999999874 789999999999999999998888876 9999999999976789999999999999
Q ss_pred EEeCCCCcEEEeccCCCcEEEEEEC-CCCCEEEEEECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcCC
Q 002407 634 IWSIPERQVVDWNDLHEMVTAACYT-PDGQGALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 634 IWDl~t~~~v~~~~~~~~V~sla~s-pdg~~l~tgs~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+||+.++..+..+..+..+.++.|+ +++.+|++|+.||.|++||+++... ... ..+|...|+++.|.+
T Consensus 602 iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~---------~~~h~~~V~~v~f~~- 671 (793)
T PLN00181 602 LWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCT---------MIGHSKTVSYVRFVD- 671 (793)
T ss_pred EEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceE---------ecCCCCCEEEEEEeC-
Confidence 9999998888777777789999995 5799999999999999999987642 222 147889999999974
Q ss_pred CCcEEEEEECCCcEEEEECCc--------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 712 SSSEVLVTSADSRIRVVDGID--------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~--------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+. .|++++.|++|+|||... .+..+.+ +...+..++|++++.+|++|+.|+.|+||+...
T Consensus 672 ~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 672 SS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcC--CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 44 799999999999999652 3344444 456678899999999999999999999999764
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=2.8e-25 Score=235.00 Aligned_cols=277 Identities=17% Similarity=0.274 Sum_probs=228.8
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEecCcCccccee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG---~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
......+++|..++.+++|+..-+. .+.+.||.++|..++|---. ..|+++|.|.++++|.++.++.+...
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~Gk~------~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~ 185 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKGKS------IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA 185 (423)
T ss_pred cccCceEEEeecCCeeEEEecCCce------EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH
Confidence 3446778999999999999976543 35678999999988885432 36999999999999998776533221
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
+..-.||...|-++.
T Consensus 186 -----------------------------------------------------------------~~~~~GHk~~V~sVs 200 (423)
T KOG0313|consen 186 -----------------------------------------------------------------LKVCRGHKRSVDSVS 200 (423)
T ss_pred -----------------------------------------------------------------HhHhcccccceeEEE
Confidence 112238999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCC-------------------------CcEEEEEe-cCCceEEEEEccCCCCEEEEEE
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSS-------------------------KTCLKIFS-HSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t-------------------------~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs 627 (927)
..++ .++++|+.|.+|+||+..+ +.++.++. |..+|.++.|++ ...+++++
T Consensus 201 v~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~S 278 (423)
T KOG0313|consen 201 VDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVS 278 (423)
T ss_pred ecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeec
Confidence 9888 7899999999999999321 22333444 999999999986 66899999
Q ss_pred CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 628 LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 628 ~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|.+|+.||+.++..+........++++.++|..++|++|+.|..|++||.+++.-.... ..+.+|.+.|.++.
T Consensus 279 wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~------~s~~gH~nwVssvk 352 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS------QSLIGHKNWVSSVK 352 (423)
T ss_pred ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE------Eeeecchhhhhhee
Confidence 999999999999999999999999999999999999999999999999999986422111 12359999999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
|+|...++|++++.|+++++||.+... ..+....|...|.++.|.. +.+|++|+.|.+|+|+.-..
T Consensus 353 wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 353 WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence 999999999999999999999988765 6667777888899999974 56999999999999997643
No 51
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.4e-24 Score=220.48 Aligned_cols=232 Identities=21% Similarity=0.360 Sum_probs=199.0
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
|+||+.+|+.|+|+.+|.+|+|++.|.++-||-..+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe------------------------------------------ 43 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE------------------------------------------ 43 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc------------------------------------------
Confidence 58999999999999999999999999999999765554
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCce
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV 610 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V 610 (927)
.+-++.||.+.|+|+....+ .+|+||+.|.+++|||+.+|+++..+....+|
T Consensus 44 ---------------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~V 96 (327)
T KOG0643|consen 44 ---------------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPV 96 (327)
T ss_pred ---------------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCee
Confidence 34466799999999999887 88999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEECC-----CcEEEEeCCC-------Cc-EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 611 TCIQFNPVDDRYFISGSLD-----AKVRIWSIPE-------RQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t-------~~-~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
..+.|++ ++++++....+ +.|.++|++. .+ ......+...++.+.|.|-+++|++|..+|.|.+||
T Consensus 97 k~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d 175 (327)
T KOG0643|consen 97 KRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD 175 (327)
T ss_pred EEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence 9999999 88887776543 5699999973 33 445666678999999999999999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
+++++...... ..|...|+.++++++.. ++++++.|.+-++||...+.. ++.+....++.+++++|...+
T Consensus 176 a~~g~~~v~s~--------~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~tl~v-~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 176 ARTGKELVDSD--------EEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVRTLEV-LKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cccCceeeech--------hhhccccccccccCCcc-eEEecccCccceeeeccceee-EEEeeecccccceecccccce
Confidence 99986554432 47888999999999876 899999999999999765443 344556788999999999888
Q ss_pred EEEEEC
Q 002407 758 VVSASE 763 (927)
Q Consensus 758 Lasgs~ 763 (927)
++.|+.
T Consensus 246 VilgGG 251 (327)
T KOG0643|consen 246 VILGGG 251 (327)
T ss_pred EEecCC
Confidence 888764
No 52
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.4e-25 Score=234.49 Aligned_cols=265 Identities=20% Similarity=0.342 Sum_probs=231.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
+.+..+.+.+|++|+..++++. ..|+||+++|..|+|+..|++||+++.|-.+++||..+...... ...+|
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e-----~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k----s~~gh 192 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELE-----RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK----SLIGH 192 (406)
T ss_pred EEEEecCCceEEEEEccchhhh-----hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH----HhcCc
Confidence 3567778999999999999884 56699999999999999999999999999999999987432222 24678
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCc-E
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQ-H 580 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~-~ 580 (927)
...|.++.+-|.+..++++..+..+.. |.. .+-++.+|.+|...|..+..+.|+ .
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~-----------------------We~~tg~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKA-----------------------WECDTGYCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeE-----------------------EecccceeEEeccCchHhEEEEEecCCeeE
Confidence 889999999999999999988887733 333 456788999999999999999994 5
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC--------------CCCEEEEEECCCcEEEEeCCCCcEEE-
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV--------------DDRYFISGSLDAKVRIWSIPERQVVD- 644 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~--------------dg~~L~sgs~Dg~I~IWDl~t~~~v~- 644 (927)
+++++.|.+|++|-+.+++|...+. |..+|.|++|.|. .+.++.+++.|++|++||+.++.++.
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 7899999999999999999988887 9999999999773 13589999999999999999999876
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
+..|...|..++|+|.|+||+++..|+++++||+++.++..... .|..-++++.|+.+.+ ++++|+-|.+
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~---------ah~hfvt~lDfh~~~p-~VvTGsVdqt 399 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE---------AHEHFVTSLDFHKTAP-YVVTGSVDQT 399 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC---------CCcceeEEEecCCCCc-eEEeccccce
Confidence 55677899999999999999999999999999999999887753 7889999999999877 8999999999
Q ss_pred EEEEE
Q 002407 725 IRVVD 729 (927)
Q Consensus 725 I~VwD 729 (927)
+++|.
T Consensus 400 ~KvwE 404 (406)
T KOG0295|consen 400 VKVWE 404 (406)
T ss_pred eeeee
Confidence 99996
No 53
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=2.5e-25 Score=242.32 Aligned_cols=307 Identities=15% Similarity=0.205 Sum_probs=228.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..|++|+..|.++++.|.|-.|+|||.|-+|++||+..................+.+..+.|++.+..+.+.........
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 35689999999999999999999999999999999986543333233334556678889999998776665544444333
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCC-cEEEEEe-
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFS- 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~-~~~~~~~- 605 (927)
..+...........+..+ .-+...+||...++|.+|+|. +.++|++.|+++||||+... +.+++|.
T Consensus 241 ~DRdG~~~~e~~KGDQYI----------~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYI----------RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred EccCCceeeeeeccchhh----------hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee
Confidence 322221111111111111 223456799999999999997 77999999999999999754 4455554
Q ss_pred -----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE---EE-eccCC--CcEEEEEECCCCCEEEEEECCCeEE
Q 002407 606 -----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VD-WNDLH--EMVTAACYTPDGQGALVGSYKGSCH 674 (927)
Q Consensus 606 -----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~---v~-~~~~~--~~V~sla~spdg~~l~tgs~Dg~I~ 674 (927)
..-+++.++|+| ++++|++|+.||.|.+|+.....+ .. ...|. ..|++|.|++||++|++-+.|++++
T Consensus 311 k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 334789999999 999999999999999999855322 11 22333 3899999999999999999999999
Q ss_pred EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE------CCCcEEEEECCcceEEEEeecCCcceEE
Q 002407 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS------ADSRIRVVDGIDLVHKFKGFRNTNSQIS 748 (927)
Q Consensus 675 IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs------~Dg~I~VwD~~~~~~~~~~~~~~~~v~s 748 (927)
+||++..+........ .....+-+.++|+|+.. +|++|. ..+.+.+||..++...++..-....|..
T Consensus 390 vWDLrq~kkpL~~~tg------L~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTG------LPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred eeeccccccchhhhcC------CCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 9999986543322211 23445678899999876 777764 3478999998888777777777888999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.|+|.=+.|+.++.||+++||-=.+
T Consensus 463 ~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred EeecchhhheeeecCCCceEEEECcc
Confidence 99999988899999999999875444
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=251.27 Aligned_cols=287 Identities=23% Similarity=0.352 Sum_probs=226.6
Q ss_pred eEEEccC-CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 560 ICSFQGH-LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 560 i~~l~gH-~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
...+.+| ...|.++.|+++ ..|++++.|+.+++|++.... .++.+ .|...|.+++|+| ++.++++++.|++|+|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEE
Confidence 3444444 788999999999 678999999999999997777 55554 4999999999999 9999999999999999
Q ss_pred EeC-CCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 635 WSI-PERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 635 WDl-~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
||+ ..+..+. +..|...|++++|+|+|+.+++|+.|++|+|||++++++...+ ..|...|++++|.+++
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l---------~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL---------KGHSDGISGLAFSPDG 300 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---------eccCCceEEEEECCCC
Confidence 999 4445554 5578899999999999999999999999999999998888776 4899999999999998
Q ss_pred CcEEEEEECCCcEEEEECCcce----EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceee
Q 002407 713 SSEVLVTSADSRIRVVDGIDLV----HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~ 788 (927)
. +|++++.|+.|+|||..... ..+.......++..++|+|++.+|++++.|+.+++|++..+..+.....+...
T Consensus 301 ~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~- 378 (456)
T KOG0266|consen 301 N-LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL- 378 (456)
T ss_pred C-EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc-
Confidence 7 78888999999999976555 23333333226899999999999999999999999999987655443222111
Q ss_pred eeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccc
Q 002407 789 SYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRIS 868 (927)
Q Consensus 789 ~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v 868 (927)
+.. .....+++.+.++.+++ .|..+
T Consensus 379 ---------~~~------------------------------------------~~~~~~~~~~~~i~sg~----~d~~v 403 (456)
T KOG0266|consen 379 ---------VRC------------------------------------------IFSPTLSTGGKLIYSGS----EDGSV 403 (456)
T ss_pred ---------cee------------------------------------------EecccccCCCCeEEEEe----CCceE
Confidence 000 00011467788888876 88999
Q ss_pred cccCchhhc---ccccc-CCCceecccCCCCCcccCCCCCEEEEEc--CCCcEEEeecC
Q 002407 869 ATWPEEKLV---LTARN-RSPRTSLDISNGISSSISAWGMVIVTAG--LRGEIRAYQNF 921 (927)
Q Consensus 869 ~~W~~e~l~---~~~~~-~s~v~s~~~~~~~~~a~S~dG~vLvTgs--~DG~IrvW~~~ 921 (927)
.+|+..... ...+| ...+. .++++|...++++++ .|+.|++|..-
T Consensus 404 ~~~~~~s~~~~~~l~~h~~~~~~--------~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGHSKAAVS--------DLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCccchhhhhcCCCCCcee--------ccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999877332 23445 22222 368899999999999 68999999853
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=4.4e-25 Score=221.84 Aligned_cols=287 Identities=18% Similarity=0.249 Sum_probs=237.7
Q ss_pred eEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 450 QEIQAHNGSIWSIKFSL---DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 450 q~L~gH~~~I~~vafSp---dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
++..||+.+|..++||| +|-+|++++.|+.-.+-+-+++..+.++ .+|...|+......+....+++..+-.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-----eghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-----EGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-----eccCcceeeeecCchhhhhhhhcccch
Confidence 34589999999999986 8889999999999988888888888876 688888988888887776666544432
Q ss_pred eeeecccccccccccccCcccccceEe-ecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-EEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVF-ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CLKI 603 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~-~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-~~~~ 603 (927)
- ++| .+++..++.|. |..-|..++|+.| ++|++|+.++.+||||++..+ +...
T Consensus 83 a-----------------------kvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 83 A-----------------------KVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred h-----------------------hhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchh
Confidence 2 222 33556666665 8889999999998 899999999999999998754 3344
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+. |+..|..+.|.. .++.|++...|++||+||.+++..++.+..+..|+++.++++|.+|.++ ..+.|.+||..+..
T Consensus 139 ~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred hcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEecccccc
Confidence 44 999999999998 8888999999999999999999999999999999999999999877665 46789999999988
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCEEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~Lasg 761 (927)
++..+. ....|.+..++|+.. .+++|+.|..++.||..+....-. ...+.++|.++.|+|+|...++|
T Consensus 217 ~lKs~k----------~P~nV~SASL~P~k~-~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 217 LLKSYK----------MPCNVESASLHPKKE-FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred ceeecc----------CccccccccccCCCc-eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 877653 446788999999874 899999999999999554333322 34568899999999999999999
Q ss_pred ECCCcEEEEECCCCCCc
Q 002407 762 SEDSYVYVWKYEAESRP 778 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~ 778 (927)
++||+|+||....++..
T Consensus 286 SEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEEecCCCch
Confidence 99999999998776543
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-23 Score=215.48 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=216.7
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+...+.+..-.+.|.+|.|+++|.+|++++.|.+|+|||..+++....+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti------------------------------- 52 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI------------------------------- 52 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-------------------------------
Confidence 3344555667889999999999999999999999999999887655543
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC--CCcEEEEeCCCCcEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM--DKTVRLWHLSSKTCLK 602 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~--DgtV~lWDl~t~~~~~ 602 (927)
..+.-.|..+.|... ..++.++. |.+||..++.+.+.++
T Consensus 53 --------------------------------------~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 53 --------------------------------------NSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR 94 (311)
T ss_pred --------------------------------------ecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE
Confidence 122233444555433 55555555 8999999999999999
Q ss_pred EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
.|. |...|+.|..+| -++.+++++.|++|++||++..++...+..... ..++|.|.|-++|++.....|++||++..
T Consensus 95 YF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEeccc
Confidence 998 999999999999 668999999999999999998777665544432 35789999999999998889999999875
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcce-EEEEEecCCCEE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQ-ISASLTANGRYV 758 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v-~sv~fspdg~~L 758 (927)
..-....+.+. .......+.+.|+|+|+ .|+.+...+.+++.|. +..+..+..+.....+ ..++|+||++++
T Consensus 173 dkgPF~tf~i~----~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 173 DKGPFTTFSIT----DNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred CCCCceeEccC----CCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 32221111111 24567789999999998 7888889999999994 4466667666554422 578999999999
Q ss_pred EEEECCCcEEEEECCCCCCccccccc-ceeeeeeeecCCCeEEEEecCCceeEEe
Q 002407 759 VSASEDSYVYVWKYEAESRPSRSKSI-TVTHSYEHFHCQDVSVAIPWPGVGDTWG 812 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s~~~~~~~~~~-~~~~~~~~~~~~~v~vavs~~g~~~i~~ 812 (927)
++|+.||+|++|+++++.+....++. .....+..|.+.-.. .++.+.....|.
T Consensus 248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m-f~sa~s~l~fw~ 301 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM-FVSASSNLVFWL 301 (311)
T ss_pred EEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee-eeecCceEEEEe
Confidence 99999999999999998877666552 344455556554322 333333334443
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.4e-23 Score=227.83 Aligned_cols=339 Identities=15% Similarity=0.225 Sum_probs=259.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++..+-..|.|.+|+.++..+. +.+.--.-+|++.+|-+.-+++++|+.|..|+||+..+.+++..+
T Consensus 24 tePw~la~LynG~V~IWnyetqtmV-----ksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F----- 93 (794)
T KOG0276|consen 24 TEPWILAALYNGDVQIWNYETQTMV-----KSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF----- 93 (794)
T ss_pred CCceEEEeeecCeeEEEecccceee-----eeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-----
Confidence 3456678888999999998776655 445667789999999999999999999999999999999998886
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
..|...+.+++..|...++.+++++..+..+.. ...-.+.++|.||..-|.+++|.|.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w---------------------e~~wa~~qtfeGH~HyVMqv~fnPkD 152 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW---------------------ENEWACEQTFEGHEHYVMQVAFNPKD 152 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeec---------------------cCceeeeeEEcCcceEEEEEEecCCC
Confidence 578889999999999999999988887743322 1223577899999999999999996
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTA 654 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~s 654 (927)
+.+++++-|++|+||.+.+..+..++. |...|+|+.|-+. +..+|++|+.|.+|+|||..+..+++.+. |...|..
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSF 232 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceE
Confidence 889999999999999999999998887 9999999999872 23599999999999999999999998665 6689999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
++|+|.=..+++|+.||+++||+..+-++...+. ....+|.|++-.+.+. .+++|...|.|.|== .
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn---------~gleRvW~I~~~k~~~-~i~vG~Deg~i~v~l-g--- 298 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN---------YGLERVWCIAAHKGDG-KIAVGFDEGSVTVKL-G--- 298 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhh---------cCCceEEEEeecCCCC-eEEEeccCCcEEEEc-c---
Confidence 9999999999999999999999998887776653 4567899999988765 688888777776521 1
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECC-CcEEEE------ECCCCCCcc-cccc---cceeeeeeeecCCCeEEEEe
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASED-SYVYVW------KYEAESRPS-RSKS---ITVTHSYEHFHCQDVSVAIP 803 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~I~IW------dl~s~~~~~-~~~~---~~~~~~~~~~~~~~v~vavs 803 (927)
.. ...+..++.|+.+-+.... ..+.+- ++..++++. ..+. .........+++++-.+++.
T Consensus 299 -------re--eP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc 369 (794)
T KOG0276|consen 299 -------RE--EPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC 369 (794)
T ss_pred -------CC--CCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe
Confidence 11 1223444555544443211 112222 333333221 1111 22222334456778888888
Q ss_pred cCCceeEEe
Q 002407 804 WPGVGDTWG 812 (927)
Q Consensus 804 ~~g~~~i~~ 812 (927)
-+|...+++
T Consensus 370 gdGEyiIyT 378 (794)
T KOG0276|consen 370 GDGEYIIYT 378 (794)
T ss_pred cCccEEEEE
Confidence 888877765
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=6.7e-25 Score=228.81 Aligned_cols=270 Identities=19% Similarity=0.333 Sum_probs=209.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
....|.|+.+. ...+++|..|++|+|||..+-.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c-------------------------------------------- 229 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC-------------------------------------------- 229 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH--------------------------------------------
Confidence 45689999994 45799999999999999865432
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
+..+.||++.|.|+.|.. ..|++|+.|.+|++||+++++++.++- |...|..+
T Consensus 230 -------------------------~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 230 -------------------------LKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred -------------------------HHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 334568999999999964 489999999999999999999998875 89999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEE----eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVD----WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~----~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
.|+ ..++++++.|.+|.+||+....-+. ..+|...|+.+.|+ .+++++++.|.+|++|++.++..+..+
T Consensus 284 rf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl-- 356 (499)
T KOG0281|consen 284 RFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTL-- 356 (499)
T ss_pred EEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhh--
Confidence 996 4799999999999999998765332 45677889999886 569999999999999999999988775
Q ss_pred ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 690 NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 690 ~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
.+|...|.|+++.. .++++|+.|.+|++||. ..++..+.+| ..-|.++.| |.+.|++|+.||+|
T Consensus 357 -------~gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRF--d~krIVSGaYDGki 422 (499)
T KOG0281|consen 357 -------NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKRIVSGAYDGKI 422 (499)
T ss_pred -------hcccccceehhccC---eEEEecCCCceEEEEeccccHHHHHHhch--HHhhhheee--cCceeeeccccceE
Confidence 48999999988853 38999999999999995 4566667766 445777777 56789999999999
Q ss_pred EEEECCCCCCcccccccc-----eeee---eeeecCCCeEEEEecCCceeEEeecCCc
Q 002407 768 YVWKYEAESRPSRSKSIT-----VTHS---YEHFHCQDVSVAIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~-----~~~~---~~~~~~~~v~vavs~~g~~~i~~~~d~~ 817 (927)
+|||+..+..+....... ..++ +-.-+.+-..++.+-+.++.+|+..+..
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 999999887663322110 0111 1111223345555566666777655443
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.3e-24 Score=218.41 Aligned_cols=270 Identities=21% Similarity=0.316 Sum_probs=227.4
Q ss_pred ccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002407 405 SSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (927)
Q Consensus 405 ~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWd 484 (927)
..-+.|..++++..|+...+-.|.. ++.. -++.||++.||...+..+...-|+++.|=+.+|||
T Consensus 24 ~itp~g~flisa~kd~~pmlr~g~t-----------gdwi-----gtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPMLRNGDT-----------GDWI-----GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred CCCCCceEEEEeccCCCchhccCCC-----------CCcE-----EeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 3344555555555555554444443 3333 34589999999999999999999999999999999
Q ss_pred cCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec--CCCceEE
Q 002407 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICS 562 (927)
Q Consensus 485 v~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~ 562 (927)
..++..+..+ .|...|..++|+.|...|.+++....+ ++|++ ...+...
T Consensus 88 a~tgdelhsf------~hkhivk~~af~~ds~~lltgg~ekll-----------------------rvfdln~p~App~E 138 (334)
T KOG0278|consen 88 AVTGDELHSF------EHKHIVKAVAFSQDSNYLLTGGQEKLL-----------------------RVFDLNRPKAPPKE 138 (334)
T ss_pred hhhhhhhhhh------hhhheeeeEEecccchhhhccchHHHh-----------------------hhhhccCCCCCchh
Confidence 9999887775 466789999999999999998777655 23333 2356678
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+.+|.+.|..+.|... +.|++++.|++||+||..++..++.+....+|+++.+++ ++++|.++ ..+.|++||..+-.
T Consensus 139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEe-cCceeEEecccccc
Confidence 8999999999999875 889999999999999999999999999999999999999 88876554 55789999999999
Q ss_pred EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 642 VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 642 ~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
++...+.+..|.+..++|+...+++|+.|..++.||..++..+..+. ++|.++|.|+.|+|+|. ..++|+.
T Consensus 217 ~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n--------kgh~gpVhcVrFSPdGE-~yAsGSE 287 (334)
T KOG0278|consen 217 LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN--------KGHFGPVHCVRFSPDGE-LYASGSE 287 (334)
T ss_pred ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecc--------cCCCCceEEEEECCCCc-eeeccCC
Confidence 99999999999999999999999999999999999999998776642 58999999999999997 8999999
Q ss_pred CCcEEEEEC
Q 002407 722 DSRIRVVDG 730 (927)
Q Consensus 722 Dg~I~VwD~ 730 (927)
||+|+||.+
T Consensus 288 DGTirlWQt 296 (334)
T KOG0278|consen 288 DGTIRLWQT 296 (334)
T ss_pred CceEEEEEe
Confidence 999999984
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.8e-24 Score=242.67 Aligned_cols=257 Identities=18% Similarity=0.313 Sum_probs=213.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..-...|..++|+|.-.+++++-..|+|++||..-+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t------------------------------------------- 42 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT------------------------------------------- 42 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhh-------------------------------------------
Confidence 3456678899999999999999999999999985433
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V 610 (927)
.+..|..|.++|..++|+|+ ..+++|+.|..|++|+..+.+|+.++. |-++|
T Consensus 43 --------------------------li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 43 --------------------------LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred --------------------------HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 23356689999999999998 889999999999999999999998776 99999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
..+.|++ .-.+|++++.|.+|+||+..+++++.. .+|...|.|..|+|....+++++-|.+|++||+..-+.......
T Consensus 97 Rt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 97 RTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred EEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC
Confidence 9999999 889999999999999999999999875 45667999999999999999999999999999975332221111
Q ss_pred --------------------ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceE
Q 002407 690 --------------------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQI 747 (927)
Q Consensus 690 --------------------~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~ 747 (927)
.+......+|...|+-++|+|.-+ +|++|+.|..|++|..... -..-....|...|.
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVs 254 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVS 254 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcc
Confidence 011122358999999999999877 8999999999999985431 12222334677899
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 748 SASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 748 sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
++-|+|...+|++.++|+.|+|||+........
T Consensus 255 svlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 255 SVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred eEEecCccceeEecCCCccEEEEecccccceee
Confidence 999999999999999999999999987655443
No 61
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.3e-22 Score=236.77 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=185.7
Q ss_pred eEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..|.+|.+.|++++|+| ++++||+|+.|++|+|||+.+......
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~----------------------------------- 113 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN----------------------------------- 113 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-----------------------------------
Confidence 34689999999999999 889999999999999999865421100
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
...++..+.+|...|.+++|+|+ +.|++++.|++|+|||+.+++.+..+.
T Consensus 114 ---------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 114 ---------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred ---------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 01345678899999999999997 589999999999999999999888887
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCC-cEEEEEECCCCCEEEEEE----CCCeEEEEECC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHE-MVTAACYTPDGQGALVGS----YKGSCHLYNTS 679 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~-~V~sla~spdg~~l~tgs----~Dg~I~IwDl~ 679 (927)
|...|.+++|+| ++.+|++++.|++|+|||+++++.+.... |.. .+..+.|.+++..+++++ .|+.|++||++
T Consensus 167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999 99999999999999999999988776444 333 345678899888877654 47899999998
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCE
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRY 757 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~ 757 (927)
+........ .......+....|++++. +|++++ .|+.|++||..+....+. ......++..++|.|.-..
T Consensus 246 ~~~~p~~~~-------~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~ 317 (493)
T PTZ00421 246 KMASPYSTV-------DLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSL 317 (493)
T ss_pred CCCCceeEe-------ccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccc
Confidence 654221110 012234456667889887 566665 699999999754332222 1223445677888874321
Q ss_pred EEEEECCCcEEEEECCC
Q 002407 758 VVSASEDSYVYVWKYEA 774 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s 774 (927)
=+ ..--..++|.+..
T Consensus 318 dv--~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 318 DT--RKCEIARFYALTY 332 (493)
T ss_pred cc--cceeeeEEEEecC
Confidence 11 1222346777653
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=232.02 Aligned_cols=284 Identities=23% Similarity=0.311 Sum_probs=239.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc--ccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+..|.+.|..+.|-++...|+||+.|..|++|++...+ .... ..+....+..+.+.+++..+.+.+.++..
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t-----LaGs~g~it~~d~d~~~~~~iAas~d~~~- 243 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELIST-----LAGSLGNITSIDFDSDNKHVIAASNDKNL- 243 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhh-----hhccCCCcceeeecCCCceEEeecCCCce-
Confidence 357899999999999998899999999999999997665 2222 35666778899999998888877777755
Q ss_pred eecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
.+|.. +.+...+|.||.+.|+++.|... ..+++|+.|.+|++||+....|.+++-.
T Consensus 244 ----------------------r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 244 ----------------------RLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred ----------------------eeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc
Confidence 33443 34667889999999999999887 4599999999999999999999998888
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
...+..|..+ ...+++|-.|++|++||+++..+.......+.|+++..++++..|++.+.|.++.++|+++......
T Consensus 302 ~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 302 GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred cccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 8888888875 4678999999999999999999999888899999999999999999999999999999999988777
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
+.-.. .......+.+.|+|++. ++++|+.||.|+||+... +...+........|++++|+|.|.+|++++.+
T Consensus 379 ~sA~g-----~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 379 FSAEG-----FKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred eeccc-----cccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 64321 12334589999999987 899999999999999654 44444444444469999999999999999999
Q ss_pred CcEEEEE
Q 002407 765 SYVYVWK 771 (927)
Q Consensus 765 g~I~IWd 771 (927)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 9999993
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.8e-24 Score=214.62 Aligned_cols=262 Identities=18% Similarity=0.330 Sum_probs=210.1
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
.|++.+.+.. +-..+..++.+. -.+.+..++|++. .+.+++++.||+++|||+..
T Consensus 37 ~G~L~ile~~--~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------- 92 (311)
T KOG0277|consen 37 NGRLFILEVT--DPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------- 92 (311)
T ss_pred CceEEEEecC--CCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEeccCC---------------------
Confidence 4555555543 122333334433 4678999999995 45888999999999999522
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSM 586 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~ 586 (927)
..+|++.++.|...|.++.|++. ..++++|.
T Consensus 93 -----------------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 93 -----------------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred -----------------------------------------------CCcchhHHHhhhhheEEeccccccceeEEeecc
Confidence 12577788999999999999986 56888899
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCCCcEEEEEECC-CCCE
Q 002407 587 DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEMVTAACYTP-DGQG 663 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~~~V~sla~sp-dg~~ 663 (927)
|++|+||+...++.+.+|. |...|...+|+|...++|++++.|+++++||++. ++.+.+..|...|.++.|+. +...
T Consensus 126 D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 126 DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE
Confidence 9999999999999999998 9999999999999999999999999999999976 55555666667999999998 6678
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEee
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGF 740 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~ 740 (927)
|++|+.|+.|++||++.-+... +. ..+|.-.|..++|+|....+|++++.|-+++|||... .+.++..
T Consensus 206 l~Tg~vd~~vr~wDir~~r~pl-~e-------L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~- 276 (311)
T KOG0277|consen 206 LATGGVDNLVRGWDIRNLRTPL-FE-------LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH- 276 (311)
T ss_pred EEecCCCceEEEEehhhccccc-ee-------ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-
Confidence 9999999999999998765321 11 2589999999999999888999999999999999542 3333332
Q ss_pred cCCcceEEEEEec-CCCEEEEEECCCcEEEEEC
Q 002407 741 RNTNSQISASLTA-NGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 741 ~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl 772 (927)
|...+..+.|++ ++.++|+++.|+.++||+-
T Consensus 277 -HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 277 -HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -cceEEeccccccccCceeeecccccceeeecc
Confidence 455677788876 5679999999999999983
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=3.8e-23 Score=241.67 Aligned_cols=269 Identities=20% Similarity=0.375 Sum_probs=222.7
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++..+..+.+|++|+...+.. +...|.||.+.|++++|...+.+|++|+.|.+++|||+.+++
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~----i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~---------- 282 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYL----ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE---------- 282 (537)
T ss_pred ecCeEEecCCCceeEEeecccceE----EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----------
Confidence 356788999999999998765433 233489999999999998878899999999999999987664
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ 579 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~ 579 (927)
+.+.+.+|...|.++...+ .
T Consensus 283 -----------------------------------------------------------C~~~l~gh~stv~~~~~~~-~ 302 (537)
T KOG0274|consen 283 -----------------------------------------------------------CTHSLQGHTSSVRCLTIDP-F 302 (537)
T ss_pred -----------------------------------------------------------EEEEecCCCceEEEEEccC-c
Confidence 3456678999999998754 4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~ 657 (927)
.+++|+.|.+|++|++.++.++.++. |..+|.++..+ +.++++|+.|++|++||+.+++++.. ..|...|.++.+
T Consensus 303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIV 379 (537)
T ss_pred eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEe
Confidence 67788999999999999999999999 99999999994 78999999999999999999998874 456689999988
Q ss_pred CCCCCEEEEEECCCeEEEEECCCC-eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ce
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LV 734 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~ 734 (927)
.+. ..++.|+.|++|++||+.+. +++..+ ..|..-+..+.+... +|++++.|++|++||..+ ..
T Consensus 380 ~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl---------~~h~~~v~~l~~~~~---~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 380 DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL---------QGHTSLVSSLLLRDN---FLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cCc-ceEEeeeeccceEeecCCchhhhhhhh---------cCCcccccccccccc---eeEeccccccEEEeecccCcee
Confidence 765 89999999999999999998 666665 478888877776542 899999999999999654 44
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
..+... +...+..+++. ...+++++.|+.+++||++++......
T Consensus 447 ~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 444443 45667777665 467899999999999999998765433
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.7e-23 Score=205.29 Aligned_cols=263 Identities=21% Similarity=0.299 Sum_probs=213.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.+.++...+.+|++|+...+. +++++.+|...|..++.+.|...|++||.|..|.+||+.+++
T Consensus 30 nY~ltcGsdrtvrLWNp~rg~-----liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk------------ 92 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRGA-----LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK------------ 92 (307)
T ss_pred CEEEEcCCCceEEeecccccc-----eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe------------
Confidence 455666677899999976554 456779999999999999999999999999999999998775
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.++.|.+|.+.|+.+.|+.+ ..
T Consensus 93 ---------------------------------------------------------v~Rr~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 93 ---------------------------------------------------------VDRRFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ---------------------------------------------------------eeeecccccceeeEEEecCcceE
Confidence 34456789999999999988 78
Q ss_pred EEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 581 LLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
+++|+.|.++++||-++. ++++++. ..+.|.+|... +..|++|+.||+++.||++.+++.. -....+|++++|
T Consensus 116 v~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s-Dy~g~pit~vs~ 191 (307)
T KOG0316|consen 116 VASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-DYFGHPITSVSF 191 (307)
T ss_pred EEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh-hhcCCcceeEEe
Confidence 999999999999998754 6777776 77889999984 5789999999999999999998654 233568999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeE--EEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT--GFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt--sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
++|++..++++.++++++.|-.+++++..+. +|...-+ ..++.... ..+++|++||.|++||+.+...
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYk---------Ghkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYK---------GHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhc---------ccccceeeeeeeecccc-eeEEeccCCceEEEEEecccee
Confidence 9999999999999999999999999988763 5555433 33455433 4899999999999999766555
Q ss_pred EEEeecCCcc-eEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 736 KFKGFRNTNS-QISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 736 ~~~~~~~~~~-v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..+...+... +++++++|.-..|+++. ++.+..|.-+
T Consensus 262 ~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 262 ISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQE 299 (307)
T ss_pred eeeeccCCceeEEeeecccCccceeEec-CCceeceeeh
Confidence 5444444444 78999999888888876 4457777543
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=4e-24 Score=220.97 Aligned_cols=271 Identities=22% Similarity=0.314 Sum_probs=229.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeee---EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQ---EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q---~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
.++++|+.+|-|.+|+..++.+.+-...| .|..|..+|.||.||.|...||+|+.||.|+||.+.++.+++.+.
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--- 302 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--- 302 (508)
T ss_pred ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh---
Confidence 56899999999999999998887655544 456799999999999999999999999999999999998777651
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
+.|...|+|+.|+.|
T Consensus 303 -----------------------------------------------------------------rAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 303 -----------------------------------------------------------------RAHTKGVTCLSFSRD 317 (508)
T ss_pred -----------------------------------------------------------------hhhccCeeEEEEccC
Confidence 258999999999998
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC---CCcEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---HEMVT 653 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---~~~V~ 653 (927)
..+++++.|.+|+|.-+.+|++++.|. |...|+...|.+ +|.++++++.||+|++|+..+.+++..+.. ...|+
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vn 396 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVN 396 (508)
T ss_pred cchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccce
Confidence 789999999999999999999999998 999999999999 999999999999999999999998876544 35788
Q ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-
Q 002407 654 AACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI- 731 (927)
Q Consensus 654 sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~- 731 (927)
.+..-| +...++++...++|+|.++. ++.+..+.. .+...+...+.+.+|.|. ++.+.+.|+.++.|...
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS------GkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS------GKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc------CCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeec
Confidence 888887 45678899999999999986 455554432 123455667778999987 89999999999999854
Q ss_pred -cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 732 -DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 732 -~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.+...+.. +...++.++-+|..++||+-++||.+++|.
T Consensus 469 G~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Cceeeeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence 44444444 466788999999999999999999999995
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.1e-23 Score=223.74 Aligned_cols=286 Identities=21% Similarity=0.326 Sum_probs=232.8
Q ss_pred CCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 455 HNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 455 H~~~I~~vafSpdG~~-LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
..++|.+++|+|...| +|+++ .-.|.||+..+......+ ......+.++.|-.||.+++++...+.+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~-----srFk~~v~s~~fR~DG~LlaaGD~sG~V------ 92 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTF-----SRFKDVVYSVDFRSDGRLLAAGDESGHV------ 92 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhH-----HhhccceeEEEeecCCeEEEccCCcCcE------
Confidence 4578999999996543 44443 347999998877665554 3445778899999999999999999988
Q ss_pred ccccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCc
Q 002407 534 RSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDY 609 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~ 609 (927)
.+|+++. ..++.+.+|+.+|..+.|+|+ ..|++|+.|+.+++||+.+......+. |+++
T Consensus 93 -----------------~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 93 -----------------KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred -----------------EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 4555333 246678899999999999997 568899999999999999988654444 9999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
|.|.+|+|.++.++++|+.||+|++||++.. ..+..+.|..+|..+.+-|.|..|++++ ...|++||+.+|.......
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhh
Confidence 9999999988889999999999999999987 7777889999999999999999998886 4579999999665444322
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
..|.+.|||+.+..++. .|++++-|+.|++||..+.... ....-.++|.+++++|+++.++.|-.+|.+.
T Consensus 235 --------~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t~~Kvv-~s~~~~~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 235 --------FNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTTNYKVV-HSWKYPGPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred --------hcccceEEEEEeecCCc-eEeecccccceEEEEccceEEE-EeeecccceeeEEecCCCceEEEecccceee
Confidence 35999999999999875 8999999999999996554433 3445678999999999999999999999888
Q ss_pred EEECCCCCCccc
Q 002407 769 VWKYEAESRPSR 780 (927)
Q Consensus 769 IWdl~s~~~~~~ 780 (927)
+=+....+++..
T Consensus 305 ~rr~~~k~k~s~ 316 (487)
T KOG0310|consen 305 IRRREVKKKPSK 316 (487)
T ss_pred eehhhcccCCCc
Confidence 776655554433
No 68
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=1.9e-22 Score=235.42 Aligned_cols=257 Identities=13% Similarity=0.188 Sum_probs=193.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
|-..|....+++|+..+++++.+..+..|+...+..+..+ ...|. +
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~-----------------~~~G~----------~------- 64 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKH-----------------TDYGK----------L------- 64 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeec-----------------ccccc----------C-------
Confidence 4556777788889888899999999999986543211000 00000 0
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCc-------EEEEEe
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKT-------CLKIFS 605 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~-------~~~~~~ 605 (927)
. .....+.+|.+.|++++|+| + .+|++++.|++|++||+.++. ++..+.
T Consensus 65 ---------------------~-~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~ 122 (493)
T PTZ00421 65 ---------------------A-SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ 122 (493)
T ss_pred ---------------------C-CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec
Confidence 0 11124678999999999999 5 689999999999999997652 344554
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
|...|.+++|+|...++|++++.|++|+|||+.+++.+..+ .|...|.+++|+|+|.+|++++.|+.|+|||+++++.
T Consensus 123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 99999999999944579999999999999999998877654 4667899999999999999999999999999999887
Q ss_pred eeecccccccccccCCCCC-eEEEEEcCCCCcEEEEEE----CCCcEEEEECCcceEEEEee--cCCcceEEEEEecCCC
Q 002407 684 QQKSPINLQNKKKRSHQRK-ITGFQFAPGSSSEVLVTS----ADSRIRVVDGIDLVHKFKGF--RNTNSQISASLTANGR 756 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~-Vtsl~fspdg~~~Llsgs----~Dg~I~VwD~~~~~~~~~~~--~~~~~v~sv~fspdg~ 756 (927)
+..+. .|... +..+.|.+++. .+++++ .|+.|++||.++....+... .....+....|+++++
T Consensus 203 v~tl~---------~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 203 VSSVE---------AHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN 272 (493)
T ss_pred EEEEe---------cCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC
Confidence 65542 45443 45677888776 455543 47999999976544333222 2233455667899999
Q ss_pred EEEEEE-CCCcEEEEECCCCCC
Q 002407 757 YVVSAS-EDSYVYVWKYEAESR 777 (927)
Q Consensus 757 ~Lasgs-~Dg~I~IWdl~s~~~ 777 (927)
+|++++ .|+.|++||+.++..
T Consensus 273 ~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 273 LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEEEEEeCCCeEEEEEeeCCce
Confidence 999887 599999999987653
No 69
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.9e-22 Score=235.08 Aligned_cols=254 Identities=14% Similarity=0.204 Sum_probs=189.9
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCcccc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
|...+.|++|+...+ .....|.+|.+.|++|+|+|+ +.+||||+.|++|+||++.++......
T Consensus 50 GG~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----------- 113 (568)
T ss_pred CCceeEEEeeecCCC-----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-----------
Confidence 566788999976533 234678999999999999996 789999999999999998653210000
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c-EEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q-HLLS 583 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~-~L~S 583 (927)
...++..+.+|...|.+++|+|+ . .|++
T Consensus 114 --------------------------------------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 114 --------------------------------------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred --------------------------------------------------cccceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 01234567789999999999998 3 4679
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcE-----EEEEE
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMV-----TAACY 657 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V-----~sla~ 657 (927)
++.|++|+|||+.+++.+..+.|...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. |...+ ....|
T Consensus 144 gS~DgtIrIWDl~tg~~~~~i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 144 SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 9999999999999999888788888999999999 99999999999999999999998876443 44433 23345
Q ss_pred CCCCCEEEEEECCC----eEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 658 TPDGQGALVGSYKG----SCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 658 spdg~~l~tgs~Dg----~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
++++.+|++++.++ .|+|||++. ...+....+ ..+...+..+.. ++...++++|+.|+.|++|+...
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l-------d~~~~~L~p~~D-~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI-------DNASAPLIPHYD-ESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe-------cCCccceEEeee-CCCCCEEEEEECCCeEEEEEccC
Confidence 68999999988774 799999985 333333221 123333333333 44344888999999999999643
Q ss_pred -ceEEEEeecCCcceEEEEEecCC
Q 002407 733 -LVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 733 -~~~~~~~~~~~~~v~sv~fspdg 755 (927)
....+..+....++..++|.|..
T Consensus 295 ~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 295 GSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CcEEeecccccCCCccceEEcccc
Confidence 33444455566778889999864
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=5.4e-23 Score=242.69 Aligned_cols=307 Identities=22% Similarity=0.282 Sum_probs=236.0
Q ss_pred cCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecCcCc----ccce-e--ecccccCccccEEEEccCCCCCeecccccC
Q 002407 454 AHNGSIWSIKFSLDGRYLASAG--EDCVIHVWQVVESE----RKGE-L--LEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs--~DgtVrVWdv~~~~----~~~~-l--~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
.|+..|.+|+.+|||..+|||| .||.++||+...-- ...+ + .......|...+.++.|++||.++|+++++
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3566799999999999999999 89999999875321 1111 0 112235788899999999999999999999
Q ss_pred Cceeeeccccccccccccc-CcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSL-DHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
..+.++.+........+.. ..... ...-+.+..|.+|...|.+++|+|+ .+|++++.|++|.||+..+.++++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~-----vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKN-----VESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ceEEEeeecccCCcccccccccccc-----cceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 9887776653111111100 00000 1123678899999999999999998 789999999999999999999999
Q ss_pred EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-------CCcEEEEEECCCCCEEEEEEC----C
Q 002407 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPDGQGALVGSY----K 670 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~spdg~~l~tgs~----D 670 (927)
++. |...|..+.|.| -|+||++-+.|++|+||.+.+-.+...+.. ...+..+.|+|||++|++... .
T Consensus 166 vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 887 999999999999 999999999999999999877555443322 246889999999999998633 3
Q ss_pred CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--------CC--------cEEEEEECCCcEEEEECCcce
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--------SS--------SEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--------g~--------~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
.++.|.+-.+-+....+ .+|.+++.++.|+|. |. ..+++|+.|++|.||......
T Consensus 245 ~~~~IieR~tWk~~~~L---------vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDL---------VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred ceeEEEecCCceeeeee---------ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 35777776555444333 499999999999982 11 167889999999999965444
Q ss_pred EEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 735 HKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 735 ~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
..+..+. ....|..++|+|||..|+.+|.||+|.+..++..
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 3333321 3567999999999999999999999999999864
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-22 Score=210.47 Aligned_cols=241 Identities=24% Similarity=0.396 Sum_probs=202.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.+++|.++|++++. +|.|+||||.|-+|+|||+.......
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg-------------------------------------- 77 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG-------------------------------------- 77 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc--------------------------------------
Confidence 46899999999999 58999999999999999987654332
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
.+-.|.+.|+++.|.+. ..|++|+.||.|.+|+.....++..+. |
T Consensus 78 -------------------------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H 126 (362)
T KOG0294|consen 78 -------------------------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH 126 (362)
T ss_pred -------------------------------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc
Confidence 23358999999999987 489999999999999999999999998 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
...|+.|+.+| .+++-++.+.|+.+++||+-.++...........+.+.|+|.|.+++++..+ .|-||.+.+..+...
T Consensus 127 ~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 127 KGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFRE 204 (362)
T ss_pred ccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhh
Confidence 99999999999 9999999999999999999999887777777777779999999999888754 688999988766554
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEE--ecCCCEEEEEECC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASL--TANGRYVVSASED 764 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~f--spdg~~Lasgs~D 764 (927)
. .....+.++.|...+ .|++|..|+.|.+||............|...|-.+.+ .|++.||++++.|
T Consensus 205 i----------~~~~r~l~~~~l~~~--~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 205 I----------ENPKRILCATFLDGS--ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred h----------hccccceeeeecCCc--eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 3 233667788887654 7999999999999997655444444455666777653 5678999999999
Q ss_pred CcEEEEECCCCC
Q 002407 765 SYVYVWKYEAES 776 (927)
Q Consensus 765 g~I~IWdl~s~~ 776 (927)
|.|+|||++...
T Consensus 273 G~I~vWd~~~~~ 284 (362)
T KOG0294|consen 273 GFIKVWDIDMET 284 (362)
T ss_pred ceEEEEEccccc
Confidence 999999998764
No 72
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.3e-23 Score=222.06 Aligned_cols=296 Identities=22% Similarity=0.333 Sum_probs=237.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc------------cc-cCccccEEEEccCCCCC
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK------------QE-DGHLNMLLLANGSPEPT 516 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~------------~~-~~~~~~v~~v~~spd~~ 516 (927)
+.+..|.-+|.||+++||++++++++.|++|.-|++.++.....+... .. ..|...+.+++.++|+.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 445789999999999999999999999999999999988754222111 11 27788899999999999
Q ss_pred eecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEe
Q 002407 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (927)
Q Consensus 517 ~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWD 594 (927)
++++++.+..+. +|.. +.+++..|.+|.+.|.+++|-.. ..|++++.|.+|++|+
T Consensus 216 ylatgg~d~~v~-----------------------Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 216 YLATGGRDRHVQ-----------------------IWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred EEEecCCCceEE-----------------------EecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 999999988873 3333 45778889999999999999876 8899999999999999
Q ss_pred CCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 595 LSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 595 l~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
++....+.++ .|.+.|..|.... -++.+.+|+.|.++++|++.....+.+..+...+-|++|-.+ ..|++|+.+|.|
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~I 350 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSI 350 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceE
Confidence 9988777654 5999999999886 677777777999999999988777777888889999999765 479999999999
Q ss_pred EEEECCCCeeeeecccccccccc---cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc---eEEEEeecCCcceE
Q 002407 674 HLYNTSENKLQQKSPINLQNKKK---RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNSQI 747 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~---~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~v~ 747 (927)
.+|++...+.+....+....... ..+...|++++..|... ++++|+.+|.|++|-.... +..+....-.+.|+
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVN 429 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVN 429 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEE
Confidence 99999998888776654433222 22334899999999655 9999999999999985544 44444445677899
Q ss_pred EEEEecCCCEEEEE-ECCCcEEEEE
Q 002407 748 SASLTANGRYVVSA-SEDSYVYVWK 771 (927)
Q Consensus 748 sv~fspdg~~Lasg-s~Dg~I~IWd 771 (927)
+++|+++|++|++| +....+--|-
T Consensus 430 sl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 430 SLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEccCCCEEEEecccccccceee
Confidence 99999999976665 3444443343
No 73
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=7.5e-22 Score=221.33 Aligned_cols=460 Identities=16% Similarity=0.174 Sum_probs=286.5
Q ss_pred CCeEEEcc--CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcCcccceeec
Q 002407 421 QDVSFHGQ--ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 421 ~~~~~~g~--~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~--DgtVrVWdv~~~~~~~~l~~ 496 (927)
..++++|. ....+++|+...... ..+|..|+-.|+|++|+|.++||++.|. |-.|-+||+.......
T Consensus 90 GryvatGEcG~~pa~kVw~la~h~v-----VAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a---- 160 (1080)
T KOG1408|consen 90 GRYVATGECGRTPASKVWSLAFHGV-----VAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA---- 160 (1080)
T ss_pred CcEEEecccCCCccceeeeeccccc-----hhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----
Confidence 35677776 556789998765543 3567899999999999999999998775 6678899886543222
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeec-cccccccc------------ccccC--------cccccceEeec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR-RGRSINRK------------SLSLD--------HMVVPETVFAL 555 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~-~~~~~~~~------------~~~~~--------~~~~~~~v~~~ 555 (927)
.......|..++|+.++.++++.+... +..+. ........ .+... .-...+..|.+
T Consensus 161 --snkiss~Vsav~fsEdgSYfvT~gnrH-vk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfai 237 (1080)
T KOG1408|consen 161 --SNKISSVVSAVAFSEDGSYFVTSGNRH-VKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAI 237 (1080)
T ss_pred --ccccceeEEEEEEccCCceeeeeeeee-EEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEE
Confidence 233446677889999988877764432 21111 11110000 00000 00000000000
Q ss_pred CC----------------------------------------CceEEE-------------------------------c
Q 002407 556 SD----------------------------------------KPICSF-------------------------------Q 564 (927)
Q Consensus 556 s~----------------------------------------k~i~~l-------------------------------~ 564 (927)
+. ..++.| .
T Consensus 238 t~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 238 TAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred ecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 00 000000 0
Q ss_pred ----cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC----cEEEEEecCCceEEEEEccC----------CCCEEEE
Q 002407 565 ----GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPV----------DDRYFIS 625 (927)
Q Consensus 565 ----gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~----~~~~~~~h~~~V~~v~fsp~----------dg~~L~s 625 (927)
+---...++.|.+. .+|.....|..|+|||++.- ++-..+.|...|+.|.--|. -...|++
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~T 397 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTT 397 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeE
Confidence 00112456778876 78999999999999999863 44445558888888876551 1235999
Q ss_pred EECCCcEEEEeCCCC---cE-----------------------------------EEeccCCCcEEEEEECCCCCEEEEE
Q 002407 626 GSLDAKVRIWSIPER---QV-----------------------------------VDWNDLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~---~~-----------------------------------v~~~~~~~~V~sla~spdg~~l~tg 667 (927)
++.|++|++|++..+ .+ ....+....+.+++++|+|++|++|
T Consensus 398 CSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsG 477 (1080)
T KOG1408|consen 398 CSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASG 477 (1080)
T ss_pred ecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceeccc
Confidence 999999999998652 11 0112233469999999999999999
Q ss_pred ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEECCc---ceEEEEeecC
Q 002407 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--SSSEVLVTSADSRIRVVDGID---LVHKFKGFRN 742 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--g~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~ 742 (927)
..-|+++||++........+ ..|...|.|+.|+.. +..+|++++.|..|+|||... +++.+. .|
T Consensus 478 Dr~GnlrVy~Lq~l~~~~~~---------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld--~H 546 (1080)
T KOG1408|consen 478 DRGGNLRVYDLQELEYTCFM---------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD--GH 546 (1080)
T ss_pred CccCceEEEEehhhhhhhhe---------ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc--cc
Confidence 99999999999887666554 489999999999853 234789999999999999643 334444 45
Q ss_pred CcceEEEEEecCC--CEEEEEECCCcEEEEECCCCCCcccc-cccceeeeeeeecCCCeEEEEecCCceeEEeecCCcee
Q 002407 743 TNSQISASLTANG--RYVVSASEDSYVYVWKYEAESRPSRS-KSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLD 819 (927)
Q Consensus 743 ~~~v~sv~fspdg--~~Lasgs~Dg~I~IWdl~s~~~~~~~-~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~ 819 (927)
...|+++.|.-+| ..+++++.|..|++=-.......... +......... -.-+++...-...+...+|+.++
T Consensus 547 SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktT-----lYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTT-----LYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccce-----EEEeeeCCCcceEEEEecccceE
Confidence 7789999998887 78999999998765433311110000 0000000000 00112222222233344555555
Q ss_pred eccccCCCCCccee-ccCCCcccCcceeeecCCCCeEEEeccccccCccccccCch---hhccccccCCCceecccCCCC
Q 002407 820 EFSTANHPPTPVEE-ISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEE---KLVLTARNRSPRTSLDISNGI 895 (927)
Q Consensus 820 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e---~l~~~~~~~s~v~s~~~~~~~ 895 (927)
.+...++....... ..++++.. .-+..-|.|-|||+.. .|+++.+.+-- -+....+|...++
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~l--IKv~lDPSgiY~atSc----sdktl~~~Df~sgEcvA~m~GHsE~VT-------- 687 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDL--IKVILDPSGIYLATSC----SDKTLCFVDFVSGECVAQMTGHSEAVT-------- 687 (1080)
T ss_pred EEeccccceeeeecccccCCCce--EEEEECCCccEEEEee----cCCceEEEEeccchhhhhhcCcchhee--------
Confidence 55554433322211 11112222 2234679999999965 78888777643 2223456766665
Q ss_pred CcccCCCCCEEEEEcCCCcEEEeecCCCcc
Q 002407 896 SSSISAWGMVIVTAGLRGEIRAYQNFGLPV 925 (927)
Q Consensus 896 ~~a~S~dG~vLvTgs~DG~IrvW~~~glP~ 925 (927)
.+.|++|.+.|++++-||.|.||+ ||.
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~---lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWK---LPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEE---Cch
Confidence 368999999999999999999999 664
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=4.4e-23 Score=212.78 Aligned_cols=214 Identities=21% Similarity=0.349 Sum_probs=179.0
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCC-----------------C-cEEEEE-ecCCceEEEEEccC
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS-----------------K-TCLKIF-SHSDYVTCIQFNPV 618 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t-----------------~-~~~~~~-~h~~~V~~v~fsp~ 618 (927)
....+..|..++.+.+|++| .+++||+.|..|+|.|++. + -.++++ .|.+.|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP- 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP- 182 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-
Confidence 34467789999999999999 6688999999999999871 1 123443 3999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcE---EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~---v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
...+|++++.|++|++||+..... ...+....+|.++.|+|.|.+|++|.....+++||+++.++..... .
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan------P 256 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN------P 256 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC------c
Confidence 999999999999999999976433 2345556799999999999999999999999999999988765433 1
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
...|...|+++.+++.+. +.++++.||.|+|||. ..++..+........|.++.|+.+|+||++.+.|..+++|.+.
T Consensus 257 d~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 257999999999999987 8999999999999995 3455555555567789999999999999999999999999999
Q ss_pred CCCCccc
Q 002407 774 AESRPSR 780 (927)
Q Consensus 774 s~~~~~~ 780 (927)
++..+..
T Consensus 336 t~R~l~~ 342 (430)
T KOG0640|consen 336 TGRMLKE 342 (430)
T ss_pred CCceEEE
Confidence 8765433
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-22 Score=229.13 Aligned_cols=261 Identities=19% Similarity=0.278 Sum_probs=216.3
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
....|.+|+..++++..+.. -++..|+++.|+++|.+||.|..+|.|.|||..+.+....
T Consensus 195 lg~~vylW~~~s~~v~~l~~-----~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~--------------- 254 (484)
T KOG0305|consen 195 LGQSVYLWSASSGSVTELCS-----FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT--------------- 254 (484)
T ss_pred ecceEEEEecCCCceEEeEe-----cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---------------
Confidence 34467888888887655543 3489999999999999999999999999999876654333
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEcc-CCCCEEEEEecCCcEEEEEeCC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-HLDDVLDLSWSKSQHLLSSSMD 587 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g-H~~~V~~l~~spd~~L~Sgs~D 587 (927)
+.+ |...|-+++|. ...+.+|+.|
T Consensus 255 ------------------------------------------------------~~~~h~~rvg~laW~-~~~lssGsr~ 279 (484)
T KOG0305|consen 255 ------------------------------------------------------LRGSHASRVGSLAWN-SSVLSSGSRD 279 (484)
T ss_pred ------------------------------------------------------ccCCcCceeEEEecc-CceEEEecCC
Confidence 334 88999999998 5779999999
Q ss_pred CcEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEEeccCCCcEEEEEECC-CCCE
Q 002407 588 KTVRLWHLSSKTCLKI-FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVDWNDLHEMVTAACYTP-DGQG 663 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~-~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~sp-dg~~ 663 (927)
+.|..+|++..+.... +. |...|..+.|++ ++++|++|+.|+.+.|||....+ ++.+..|...|.+++|+| ....
T Consensus 280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~l 358 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGL 358 (484)
T ss_pred CcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCc
Confidence 9999999998765544 44 999999999999 99999999999999999996544 456778889999999999 4556
Q ss_pred EEEE--ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE-EECCCcEEEEECCcceEEEEee
Q 002407 664 ALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV-TSADSRIRVVDGIDLVHKFKGF 740 (927)
Q Consensus 664 l~tg--s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls-gs~Dg~I~VwD~~~~~~~~~~~ 740 (927)
||+| +.|+.|++||+.++..+... .....|+.+.|++..+.++.+ |..+..|.||+...+.......
T Consensus 359 LAsGGGs~D~~i~fwn~~~g~~i~~v----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWNTNTGARIDSV----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred eEEcCCCcccEEEEEEcCCCcEeccc----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 7775 56899999999999888763 567889999999987644443 3467899999976655555556
Q ss_pred cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 741 RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 741 ~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.|...|..++++|||..|++|+.|.++++|++-..
T Consensus 429 gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 67788999999999999999999999999999875
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=6.1e-24 Score=223.52 Aligned_cols=288 Identities=15% Similarity=0.266 Sum_probs=227.6
Q ss_pred EeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 451 EIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.|.||.+.|.|++=+|.. ..+|||+.||.|+|||+.+..+...+ ..|.+.|..+.... ..+.+++.+..+
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~--~~~~tvgdDKtv-- 131 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ--TSFFTVGDDKTV-- 131 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-----ecccCceeeEEecc--cceEEecCCcce--
Confidence 458999999999999976 78999999999999999988877775 45666677666655 344455566555
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
..|.+.+.+++++.+. ..++.|.-+.. ..++|++. .|-|||.....++..+. ..
T Consensus 132 ---------------------K~wk~~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 132 ---------------------KQWKIDGPPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred ---------------------eeeeccCCcceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCC
Confidence 3445555566666543 45666666554 66777775 48999999999999988 77
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+.|.++.|+|....+|++|..|+.|.|||+++..++......-.-+.++|+|.+-.|++|..|..++.||++........
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v 267 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV 267 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh
Confidence 88999999998888899999999999999999998877766777889999998888999999999999999875432221
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCCc
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
...|...|.++.|+|.|. .+++|+.|.+|+||........-..| ..-..|.++.|+.|.+|+++|++|++
T Consensus 268 --------~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 268 --------HKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred --------hcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 258999999999999998 79999999999999854432211111 12356889999999999999999999
Q ss_pred EEEEECCCCCCccc
Q 002407 767 VYVWKYEAESRPSR 780 (927)
Q Consensus 767 I~IWdl~s~~~~~~ 780 (927)
|++|.-...+++..
T Consensus 339 vRlWka~Aseklgv 352 (433)
T KOG0268|consen 339 VRLWKAKASEKLGV 352 (433)
T ss_pred eeeeecchhhhcCC
Confidence 99999887665543
No 77
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=2.1e-22 Score=204.66 Aligned_cols=264 Identities=16% Similarity=0.243 Sum_probs=201.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+++++...+.++.+|--..++.. -++.||++.||||+.+-+.++|+||+.|.+++|||+.+++.+..+.
T Consensus 23 DLlFscaKD~~~~vw~s~nGerl-----Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k------ 91 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERL-----GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK------ 91 (327)
T ss_pred cEEEEecCCCCceEEEecCCcee-----eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee------
Confidence 34555555556666654444433 3457999999999999999999999999999999999998666541
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
-..+|..+.|+.++.+
T Consensus 92 ----------------------------------------------------------------~~~~Vk~~~F~~~gn~ 107 (327)
T KOG0643|consen 92 ----------------------------------------------------------------TNSPVKRVDFSFGGNL 107 (327)
T ss_pred ----------------------------------------------------------------cCCeeEEEeeccCCcE
Confidence 2345667777777554
Q ss_pred EEEeCC------CcEEEEeCC-------CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEe-
Q 002407 582 LSSSMD------KTVRLWHLS-------SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDW- 645 (927)
Q Consensus 582 ~Sgs~D------gtV~lWDl~-------t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~- 645 (927)
+..+.| +.|.++|++ ..++...+. +...++.+-|.| -+++|++|..||.|.+||+++++. +..
T Consensus 108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~ 186 (327)
T KOG0643|consen 108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSD 186 (327)
T ss_pred EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeech
Confidence 444433 568899887 455455444 889999999999 999999999999999999999754 443
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
..|...|+.+.+++|..++++++.|.+-++||+.+..++.++ ....+|++.+++|-...+++.|+.+ ..
T Consensus 187 ~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty----------~te~PvN~aaisP~~d~VilgGGqe-A~ 255 (327)
T KOG0643|consen 187 EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY----------TTERPVNTAAISPLLDHVILGGGQE-AM 255 (327)
T ss_pred hhhccccccccccCCcceEEecccCccceeeeccceeeEEEe----------eecccccceecccccceEEecCCce-ee
Confidence 456679999999999999999999999999999999888875 3557899999999776444433333 22
Q ss_pred EE--------------EEC--CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 726 RV--------------VDG--IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 726 ~V--------------wD~--~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-| |+. .+.+..++ .|-++|.+++|+|+|+..++|++||.|+|.-++.
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhcccc--ccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 22 221 12223333 3578999999999999999999999999987654
No 78
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-22 Score=208.07 Aligned_cols=325 Identities=19% Similarity=0.283 Sum_probs=220.3
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce-eecccccCccccEEEEc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE-LLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~-l~~~~~~~~~~~v~~v~ 510 (927)
+.+.|+++...+..-+....|++|.+.|++|+|+.||++|||++.|++|+||++.+...... ... ..-.......+.
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R--~nve~dhpT~V~ 139 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR--QNVEYDHPTRVV 139 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh--ccccCCCceEEE
Confidence 45667666666666666778899999999999999999999999999999999987432111 000 011123456778
Q ss_pred cCCCCCeecc-cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC
Q 002407 511 GSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (927)
Q Consensus 511 ~spd~~~la~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg 588 (927)
|.||...++. ...+..+......+... .... .... ....+..-+.|.-.|..+-...+ .+|++++.|.
T Consensus 140 FapDc~s~vv~~~~g~~l~vyk~~K~~d-G~~~--~~~v-------~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt 209 (420)
T KOG2096|consen 140 FAPDCKSVVVSVKRGNKLCVYKLVKKTD-GSGS--HHFV-------HIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT 209 (420)
T ss_pred ECCCcceEEEEEccCCEEEEEEeeeccc-CCCC--cccc-------cccccccchhcccceEEEeecCCceEEEEecCCC
Confidence 8998655444 33334443332222111 0000 0000 00111122346677777777666 7899999999
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC---CC------cEEEeccCCCcEEEEEEC
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP---ER------QVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~---t~------~~v~~~~~~~~V~sla~s 658 (927)
+|.||++. |+.+..+. ....-+..+.+| +|++|++++.---|++|.+- .| +...+.+|...|..++|+
T Consensus 210 ~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs 287 (420)
T KOG2096|consen 210 KICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS 287 (420)
T ss_pred cEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence 99999999 88887776 555667788999 99999999999999999862 22 234567788899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccc--cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--e
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ--NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--V 734 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~--~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--~ 734 (927)
++...+++.+.||+++|||+.-.-...+-+..+. .............+.++|.+. +++.+....|++|..... .
T Consensus 288 n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s~gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 288 NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD--SLAVSFGSDLKVFASEDGKDY 365 (420)
T ss_pred CCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc--EEEeecCCceEEEEcccCccc
Confidence 9999999999999999999864322221111000 011123344455899999985 677777888999985432 2
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
..+. ..+...|.+++|+++|+++++++ |..++++.-..
T Consensus 366 ~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 366 PELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred hhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence 2222 23567899999999999999997 67788876433
No 79
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.2e-22 Score=205.01 Aligned_cols=269 Identities=19% Similarity=0.262 Sum_probs=215.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
-+..|..|.|+|.+..|+.++.||++++|++...+....+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~---------------------------------------- 51 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF---------------------------------------- 51 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe----------------------------------------
Confidence 4678999999999999999999999999998765332221
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEE
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQ 614 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~ 614 (927)
.|..++++++|.++..+++|+.||.|+++|+.++.....-.|...|.||.
T Consensus 52 ------------------------------~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~ 101 (323)
T KOG1036|consen 52 ------------------------------KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIE 101 (323)
T ss_pred ------------------------------ecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEE
Confidence 38889999999999999999999999999999999988888999999999
Q ss_pred EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 615 FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 615 fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+.+ ....+++|++|++|++||.+....+..+.....|.++... |..|++|+.+..+.+||+++.....+.
T Consensus 102 ~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~------- 171 (323)
T KOG1036|consen 102 YSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQR------- 171 (323)
T ss_pred eec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhh-------
Confidence 999 7788999999999999999987776667777788887765 778999999999999999987654421
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE--ECC----cceEEEEeecC-------CcceEEEEEecCCCEEEEE
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV--DGI----DLVHKFKGFRN-------TNSQISASLTANGRYVVSA 761 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw--D~~----~~~~~~~~~~~-------~~~v~sv~fspdg~~Lasg 761 (927)
+.......+.++++.|.+. -+++++-||.|.+= |.. ...-.|+.|.. .-+|.+++|+|--..||||
T Consensus 172 reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTg 250 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATG 250 (323)
T ss_pred ccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEec
Confidence 1134556789999999655 58899999999884 432 22333444432 2467899999999999999
Q ss_pred ECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 762 SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
+.||.|.+||+.+.++...............|..++..+|++.
T Consensus 251 GsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 251 GSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred CCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9999999999999887766655544455566666666666643
No 80
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=2.1e-21 Score=227.79 Aligned_cols=206 Identities=16% Similarity=0.237 Sum_probs=160.6
Q ss_pred ceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc--------EEEEEe-cCCceEEEEEccCCCC-EEEEE
Q 002407 559 PICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT--------CLKIFS-HSDYVTCIQFNPVDDR-YFISG 626 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~--------~~~~~~-h~~~V~~v~fsp~dg~-~L~sg 626 (927)
++..+.+|.+.|.+++|+|+ .+|++|+.|++|+|||+.++. ++..+. |...|.+++|+| ++. +|+++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P-~g~~iLaSg 144 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP-MNYYIMCSS 144 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC-CCCeEEEEE
Confidence 45677899999999999996 689999999999999998642 233444 899999999999 665 46789
Q ss_pred ECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE-
Q 002407 627 SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG- 705 (927)
Q Consensus 627 s~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts- 705 (927)
+.|++|+|||+.+++.+..+.++..|.+++|+|+|.+|++++.|+.|+|||++++..+..+ ..|...+..
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl---------~gH~g~~~s~ 215 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF---------HIHDGGKNTK 215 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE---------ecccCCceeE
Confidence 9999999999999887766667788999999999999999999999999999998877654 256554433
Q ss_pred ----EEEcCCCCcEEEEEECCC----cEEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 706 ----FQFAPGSSSEVLVTSADS----RIRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 706 ----l~fspdg~~~Llsgs~Dg----~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
..|++++. +|++++.|+ +|+|||.+. .+..+........+......++|.++++|+.|++|++|++..
T Consensus 216 ~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 216 NIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 23457765 677777664 799999764 333333333333333344455689999999999999999976
Q ss_pred C
Q 002407 775 E 775 (927)
Q Consensus 775 ~ 775 (927)
+
T Consensus 295 ~ 295 (568)
T PTZ00420 295 G 295 (568)
T ss_pred C
Confidence 5
No 81
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=4.9e-22 Score=210.54 Aligned_cols=273 Identities=21% Similarity=0.319 Sum_probs=216.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
-|.+.|.+|... +++++||+.||+++|||..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~----------------------------------------------- 133 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK----------------------------------------------- 133 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-----------------------------------------------
Confidence 499999999998 7899999999999999963
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C---cEEEEEeCCCcEEEEeCCCCcEEEE-----E
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S---QHLLSSSMDKTVRLWHLSSKTCLKI-----F 604 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d---~~L~Sgs~DgtV~lWDl~t~~~~~~-----~ 604 (927)
++.+..+.||.++|..++|.. + ..|+++++|.++++|.++.+..... -
T Consensus 134 -----------------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 134 -----------------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred -----------------------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 245567789999999888853 3 4699999999999999887654321 1
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--------------------------cEEEeccCCCcEEEEEEC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--------------------------QVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--------------------------~~v~~~~~~~~V~sla~s 658 (927)
+|...|.+|...+ ++..+++|+.|.+|+||+.... .++....|.+.|.++.|+
T Consensus 191 GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 5999999999999 9999999999999999993210 123456777899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceE
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVH 735 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~ 735 (927)
+ ...+++++.|.+|+.||+.++...... .....++++..+|... +|++|+.|..|++||.+. -..
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~~~~~----------~~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGLKSTL----------TTNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred C-CCceEeecccceEEEEEeecccceeee----------ecCcceeEeecccccc-eeeecCCCCceeecCCCCCCCcee
Confidence 8 668999999999999999999887763 4567899999999765 899999999999999653 233
Q ss_pred EEEeecCCcceEEEEEecCCC-EEEEEECCCcEEEEECCCCCCcc-cccccceeeeeeeecCCCeEEEEecCCc-eeEEe
Q 002407 736 KFKGFRNTNSQISASLTANGR-YVVSASEDSYVYVWKYEAESRPS-RSKSITVTHSYEHFHCQDVSVAIPWPGV-GDTWG 812 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~~~~v~vavs~~g~-~~i~~ 812 (927)
.+....|...|.++.|+|... .|++++.|+++++||+++...|. .+. -| ++-.+++-|... ..+.+
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~----------~h-~DKvl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA----------GH-NDKVLSVDWNEGGLIVSG 406 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec----------cC-CceEEEEeccCCceEEec
Confidence 334444567899999999664 57899999999999999876332 111 11 456778888855 45566
Q ss_pred ecCCceeecc
Q 002407 813 LQDTYLDEFS 822 (927)
Q Consensus 813 ~~d~~i~~~~ 822 (927)
..|.+++.+.
T Consensus 407 GaD~~l~i~~ 416 (423)
T KOG0313|consen 407 GADNKLRIFK 416 (423)
T ss_pred cCcceEEEec
Confidence 7777766654
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.2e-21 Score=188.70 Aligned_cols=251 Identities=22% Similarity=0.320 Sum_probs=203.5
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
..++.-+.|++.|.|.+|+|+|.+||||+.|.+|++--+....+...
T Consensus 80 v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~--------------------------------- 126 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT--------------------------------- 126 (350)
T ss_pred EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---------------------------------
Confidence 34456678999999999999999999999999999987654321110
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC----cE-EEEE-eCCCcEEEEeCCCCcE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QH-LLSS-SMDKTVRLWHLSSKTC 600 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd----~~-L~Sg-s~DgtV~lWDl~t~~~ 600 (927)
.+-..|..|.+.|.+++|..+ +. |+++ ..|..|++-|..+++.
T Consensus 127 -------------------------------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 127 -------------------------------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG 175 (350)
T ss_pred -------------------------------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc
Confidence 122356679999999999754 33 4444 3577888889999999
Q ss_pred EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--------CcEEEEEECCCCCEEEEEECCC
Q 002407 601 LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--------EMVTAACYTPDGQGALVGSYKG 671 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--------~~V~sla~spdg~~l~tgs~Dg 671 (927)
.+.+. |++-|.++--- ++-+|++|+.|.+|++||++-..++...+.. ..|.+++..|.|++|++|-.|.
T Consensus 176 ~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 176 FHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred ceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 88887 99999887432 6889999999999999999988877654432 4799999999999999999999
Q ss_pred eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceE
Q 002407 672 SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQI 747 (927)
Q Consensus 672 ~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~ 747 (927)
.+.+||++.++.++.+ ..|...|.++.|+|.- .++++++.|..|++-|+.. .+.......+...++
T Consensus 254 sc~lydirg~r~iq~f---------~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i 323 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRF---------HPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI 323 (350)
T ss_pred ceEEEEeeCCceeeee---------CCCccceeEEEeCCCc-eEEEEecccceEEEeecccchhhcCceEEEEeccCceE
Confidence 9999999999998876 4899999999999964 5899999999999999532 223333345667788
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECC
Q 002407 748 SASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 748 sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+.|+|..--+++.+.|.++.+|-+.
T Consensus 324 ~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 324 QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999874
No 83
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=3.7e-21 Score=216.67 Aligned_cols=436 Identities=16% Similarity=0.206 Sum_probs=295.5
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEecCcCcccceeec
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR---YLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~---~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
...+++.|..+..|.+|.-... ......+|.||++.|.+|+|..-+. +|||+|+|..||||.+.-.........
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~d---~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~ 234 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSAD---SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER 234 (764)
T ss_pred CcEEEEecCcceEEEEeccCCc---ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc
Confidence 3344788999999999987755 3445568999999999999987554 899999999999999864432211100
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
.. ..+..++....... . +..+. -.....+.||.+.|.++.|+
T Consensus 235 e~---------~~t~~~~~~~f~~l----------------------~-----~i~~~--is~eall~GHeDWV~sv~W~ 276 (764)
T KOG1063|consen 235 ED---------SLTTLSNLPVFMIL----------------------E-----EIQYR--ISFEALLMGHEDWVYSVWWH 276 (764)
T ss_pred cc---------ccccccCCceeeee----------------------e-----eEEEE--EehhhhhcCcccceEEEEEc
Confidence 00 00000000000000 0 00000 01112356999999999999
Q ss_pred CCc-EEEEEeCCCcEEEEeCCCCcE--EEEE--e----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEE
Q 002407 577 KSQ-HLLSSSMDKTVRLWHLSSKTC--LKIF--S----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVV 643 (927)
Q Consensus 577 pd~-~L~Sgs~DgtV~lWDl~t~~~--~~~~--~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v 643 (927)
|.+ .|++++.|+++.+|......- +... + .........|+| +++.+++-+.-|..++|...+. +..
T Consensus 277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecc
Confidence 995 799999999999998876532 2222 2 244588999999 9999999999999999983332 122
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
..-+|-+.|+.++|.|.|.+|++.+.|.+-|+|-.-..+.. - ....+...|...++|++|-+. +..+++|....
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-w----HEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEK 429 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-W----HEIARPQIHGYDLTCLSFVNE-DLQFVSGADEK 429 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccc-e----eeecccccccccceeeehccC-Cceeeecccce
Confidence 34566689999999999999999999999999876522221 1 122334579999999999985 44788888889
Q ss_pred cEEEEECC----------------------------------c-c--------------e--------------------
Q 002407 724 RIRVVDGI----------------------------------D-L--------------V-------------------- 734 (927)
Q Consensus 724 ~I~VwD~~----------------------------------~-~--------------~-------------------- 734 (927)
.+|+|+.. + . .
T Consensus 430 VlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqL 509 (764)
T KOG1063|consen 430 VLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQL 509 (764)
T ss_pred eeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHH
Confidence 99999700 0 0 0
Q ss_pred -------EEEEeecCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCCCCcccccccceeeeeeeecCCCe-EEE
Q 002407 735 -------HKFKGFRNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDV-SVA 801 (927)
Q Consensus 735 -------~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v-~va 801 (927)
..-+.+.|...|.+++.+|+|++||+++.. ..|++|+..+-.....+..+........|++++. .++
T Consensus 510 q~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 510 QQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 000112355678999999999999999754 3499999999887777888888888888888764 444
Q ss_pred EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---
Q 002407 802 IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL--- 878 (927)
Q Consensus 802 vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~--- 878 (927)
++-+-+..+|..+......+.-.. .......+-.+.|+|++.++|+++ .|+.+.+|.+...+.
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~----------~k~HtRIIWdcsW~pde~~FaTaS----RDK~VkVW~~~~~~d~~i 655 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFAC----------LKAHTRIIWDCSWSPDEKYFATAS----RDKKVKVWEEPDLRDKYI 655 (764)
T ss_pred eecCceEEeeeeecccchhhhhcc----------ccccceEEEEcccCcccceeEEec----CCceEEEEeccCchhhhh
Confidence 666666777776554443333111 111224445567999999999988 899999998875511
Q ss_pred ----ccccCCCceecccCCCCCcccCCCCC-EEEEEcCCCcEEEeecC
Q 002407 879 ----TARNRSPRTSLDISNGISSSISAWGM-VIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 879 ----~~~~~s~v~s~~~~~~~~~a~S~dG~-vLvTgs~DG~IrvW~~~ 921 (927)
...+..+++.+.+. ..+.+... +++.|-+-|.|-+|+-+
T Consensus 656 ~~~a~~~~~~aVTAv~~~----~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 656 SRFACLKFSLAVTAVAYL----PVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhchhccCCceeeEEee----ccccccccceEEEEecccEEEEEecc
Confidence 12334444443222 22333333 77888888999999944
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.7e-22 Score=225.89 Aligned_cols=205 Identities=21% Similarity=0.328 Sum_probs=178.4
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEE-ccCCCCEEEEEECCCcEEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQF-NPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~f-sp~dg~~L~sgs~Dg~I~I 634 (927)
+..++.|.+.|.++....+ +.|+++|.|-+|++|+...+ -|+.++. |.++|.|+++ -+ +..++++|+.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEEE
Confidence 4466789999999999887 58999999999999999877 5677776 9999999999 55 8889999999999999
Q ss_pred EeCCCCc--EEE---------ec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 635 WSIPERQ--VVD---------WN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 635 WDl~t~~--~v~---------~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
||+.++. ++. .. ++...|.+++.++.|..|+.|+..+.|++||.++++.+..+ ++|...
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkL---------rGHTdN 215 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKL---------RGHTDN 215 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeee---------eccccc
Confidence 9999772 221 12 45578999999999999999999999999999998877664 599999
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|..+..+++|. .+++++.||+|++||++...+....+.|...++++..+|+-.++++|+.||.|+.=|+.+.
T Consensus 216 Vr~ll~~dDGt-~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 216 VRVLLVNDDGT-RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEEEEcCCCC-eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999987 7999999999999998776666666666777999999999999999999999999999985
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=3e-22 Score=203.12 Aligned_cols=203 Identities=21% Similarity=0.372 Sum_probs=176.2
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
+.+++|...|..++|.-+ .+|++++.|+++.+|++.......... |.+.|-.++|+|...++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 567889999999999998 679999999999999999876555443 9999999999998999999999999999999
Q ss_pred CCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 637 l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
++.+++.........-.-++|+|+|++++++..|..|.+.|.++.+.....+ ....+..+.|+-++. ++
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----------~~~e~ne~~w~~~nd-~F 162 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----------FKFEVNEISWNNSND-LF 162 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc----------ccceeeeeeecCCCC-EE
Confidence 9999998877777766778999999999999999999999999988877643 345577888886555 78
Q ss_pred EEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 717 LVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.....|.|.|.....+........|.....++.|+|+|+|+|+|+.|..+-+||++.
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence 8888889999988666666666666778899999999999999999999999999975
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=9.9e-22 Score=202.99 Aligned_cols=277 Identities=15% Similarity=0.209 Sum_probs=222.2
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcC-cccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 454 AHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVES-ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 454 gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~-~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
.-.+.|.+|+||| ...+|+.++.|++||+|++... .... .....+..+++.++|+.++..++.++.++..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~---- 96 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA---- 96 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCce----
Confidence 4578999999999 5556778999999999999874 3222 3345677899999999999999999888877
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEecCC
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD 608 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~ 608 (927)
++|++....+..+..|.++|..+.|-+. ..|+|||.|++|++||++...++.++....
T Consensus 97 -------------------k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 97 -------------------KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred -------------------EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 7888888888999999999999999876 479999999999999999999999999999
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
.|+++..- ..+++.+..+..|.+|+++.+.... .-..+-.+.+++..+|....+.|+-+|.+.|..+..+....
T Consensus 158 RvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 158 RVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD 234 (347)
T ss_pred eeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC
Confidence 99998873 4588889999999999997764332 22345689999999999999999999999999998864444
Q ss_pred ecccccccccc--cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 686 KSPINLQNKKK--RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 686 ~~~i~~~~~~~--~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.+.+....... ...-..|++|+|+|.-. .|++.+.||++.+||............+..+|++.+|+.+|.++|-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 44433222111 11134578899999755 79999999999999965444444445678899999999999988755
No 87
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=4e-22 Score=205.76 Aligned_cols=302 Identities=16% Similarity=0.217 Sum_probs=226.9
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc---cccee----------ecccccCccccEEEEccCC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE---RKGEL----------LEKQEDGHLNMLLLANGSP 513 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~---~~~~l----------~~~~~~~~~~~v~~v~~sp 513 (927)
+....+..|++++.+.+|+|||.++|||+.|..|+|.|++..- ...++ .....-.|...|..+.|.|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 3345578899999999999999999999999999999997210 11111 1112235678888999999
Q ss_pred CCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEE
Q 002407 514 EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRL 592 (927)
Q Consensus 514 d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~l 592 (927)
...+|+++..++.+......+... |.....-....+|.+|.|+|. .+|+.|..--++++
T Consensus 183 re~ILiS~srD~tvKlFDfsK~sa--------------------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSA--------------------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHH--------------------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 999999999999884333222111 111112234568999999999 67888888889999
Q ss_pred EeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC---CCcEEEEEECCCCCEEE
Q 002407 593 WHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---HEMVTAACYTPDGQGAL 665 (927)
Q Consensus 593 WDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---~~~V~sla~spdg~~l~ 665 (927)
||+.+-+|...-. |+..|+++.+++ .+++.++++.||.|+|||--+++++..+.. ...|.++.|..+|++++
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 9999998876543 999999999999 999999999999999999888888765432 35899999999999999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-EEEEeecCCc
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTN 744 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~ 744 (927)
+.+.|..+++|.+.+++.+..+.-.... +...--+...|+.....+|+---..+.+.-||.++.- ..+....|.+
T Consensus 322 sSG~DS~vkLWEi~t~R~l~~YtGAg~t----grq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~ 397 (430)
T KOG0640|consen 322 SSGKDSTVKLWEISTGRMLKEYTGAGTT----GRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG 397 (430)
T ss_pred ecCCcceeeeeeecCCceEEEEecCCcc----cchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC
Confidence 9999999999999999998876432111 1111123334555544344444456788999966432 2333446788
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+..+.-+|.+.-+++++.|-.+++|--+
T Consensus 398 a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 398 AVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceEEEeCCCCCceeeecccceeeeeeec
Confidence 89999999999999999999999999654
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=3.5e-23 Score=217.83 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=218.1
Q ss_pred CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+..|.||.+.|.||+=+|. ..+++|+.||.|+|||+.+..++.+|. |.+.|..|++.. ..+++++.|.+|+.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 456678999999999999998 579999999999999999999999998 999999999964 67889999999999
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
|.+... .+..+.....+..+.-+..+..+++++. .|.|||..-...+..+. -....|.++.|+|....
T Consensus 134 wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms---------wG~Dti~svkfNpvETs 201 (433)
T KOG0268|consen 134 WKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS---------WGADSISSVKFNPVETS 201 (433)
T ss_pred eeccCC-cceeeeccccccccccccccccccccCc--eeeecccccCCccceee---------cCCCceeEEecCCCcch
Confidence 998763 5566666677777777777778888764 59999998777776654 34567999999998888
Q ss_pred EEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeec
Q 002407 715 EVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFH 794 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~ 794 (927)
+|++++.|+.|.|||.+.....-+.. ....-..++|+|.+--+++|++|.++|.||++....|... +
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v------------~ 268 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV------------H 268 (433)
T ss_pred heeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchh------------h
Confidence 88889999999999965432221111 1223457899998888999999999999999876544321 0
Q ss_pred CCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCch
Q 002407 795 CQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEE 874 (927)
Q Consensus 795 ~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e 874 (927)
. .|...+ ..+.|||.|+-+++++ .|++|++++..
T Consensus 269 ~------------------------------dhvsAV------------~dVdfsptG~Efvsgs----yDksIRIf~~~ 302 (433)
T KOG0268|consen 269 K------------------------------DHVSAV------------MDVDFSPTGQEFVSGS----YDKSIRIFPVN 302 (433)
T ss_pred c------------------------------ccceeE------------EEeccCCCcchhcccc----ccceEEEeecC
Confidence 0 111111 2245999999999988 99999999975
Q ss_pred hhccccccCCCceecc-cCCCCCcccCCCCCEEEEEcCCCcEEEeecC
Q 002407 875 KLVLTARNRSPRTSLD-ISNGISSSISAWGMVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 875 ~l~~~~~~~s~v~s~~-~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~ 921 (927)
.. |+..+-... +-+-.++.||.|.++|++|++||.||+|+.+
T Consensus 303 ~~-----~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 303 HG-----HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred CC-----cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 43 222221111 0111168999999999999999999999965
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=209.40 Aligned_cols=268 Identities=21% Similarity=0.295 Sum_probs=225.4
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
...+.+|..+..+-+|++.+.++.. .|+||...|+.+.|+|+...+++++.|-.|+||.+.....
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~-----~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~---------- 295 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILA-----TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE---------- 295 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhh-----hccCcceEEEEEEeccchhheeecCCcceEEeeccccccC----------
Confidence 4667899999999999998887654 4589999999999999999999999999999998754331
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
......|..+|+.+..+|. .
T Consensus 296 -----------------------------------------------------------~~~~~~h~~~V~~ls~h~tge 316 (506)
T KOG0289|consen 296 -----------------------------------------------------------PTSSRPHEEPVTGLSLHPTGE 316 (506)
T ss_pred -----------------------------------------------------------ccccccccccceeeeeccCCc
Confidence 1123459999999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecC---CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAA 655 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~---~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sl 655 (927)
+|++++.|++..+.|+.++.++....+. -.+++++|+| ||.+|.+|..|+.|+|||+..+..+. +..|...|..+
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI 395 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE
Confidence 9999999999999999999998888764 3489999999 99999999999999999999887665 45566899999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--Ccc
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDL 733 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~ 733 (927)
+|+.+|-+|++++.|+.|++||++..+...++++ .....+.++.|.+.|. +|++++.|=+|++++. ...
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l--------~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL--------DEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccceeec--------cccccceeEEEcCCCC-eEEeecceeEEEEEecccccc
Confidence 9999999999999999999999998887666653 3344799999999987 7888888888888872 233
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
......+.+.+..+.+.|....+++++++.|..++++.+
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 343444445567888999999999999999999998865
No 90
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=9.7e-21 Score=217.01 Aligned_cols=434 Identities=15% Similarity=0.146 Sum_probs=305.3
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
+..|...|++.+||..++.+. .++++|...|+++.=+|--..+|.|..+|+|.|+++..++.+..+.. ..
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v-----~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-----d~ 244 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVV-----YTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-----DW 244 (910)
T ss_pred EEEeecCCcEEEEEeccCcEE-----EEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-----cc
Confidence 788999999999998877653 56689999999999999888999999999999999999998888742 25
Q ss_pred ccEEEEccCCCCCeec-ccccCCceeeecccccccccccccCcccccceEeecCCCceEE--EccCCCCEEEEEecCC-c
Q 002407 504 NMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS--FQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 504 ~~v~~v~~spd~~~la-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~--l~gH~~~V~~l~~spd-~ 579 (927)
..|..++|.-||..+. ++...+.+ .+|++..+.+.. ...|.+.|..+.|.+. .
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m-----------------------~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDM-----------------------AFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceE-----------------------EEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 7889999999976554 44444655 567777665543 3479999999999998 8
Q ss_pred EEEEEeCCCcEEEEeCCCCc----EEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc----EEE------
Q 002407 580 HLLSSSMDKTVRLWHLSSKT----CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----VVD------ 644 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~----~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~----~v~------ 644 (927)
.|++++.|+.+++|=.+++. .++.- +|..+..||.|.-..+.++++++.|++++.+++.... +.+
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 89999999999988666443 22222 3999999999996689999999999999998874321 111
Q ss_pred -----eccC----CCcEEEEEECCC-----CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 645 -----WNDL----HEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 645 -----~~~~----~~~V~sla~spd-----g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
...+ -.+|..+++... .+.+++--.+..++.|++++...-... +...+++.....+++++.++
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~---L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV---LDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE---ecCccccccCcceEEEEEec
Confidence 1100 135666666532 234555555677999999876552211 11222334567899999999
Q ss_pred CCCcEEEEEECCCcEEEEECCcceEEEEe---ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccccccee
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDLVHKFKG---FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVT 787 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~~~~~~~---~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~ 787 (927)
-|+ +.++|...|.|-+|+....+..-.. ..+..+|+.++...-++.+++++.+|.+++|++.........+- ...
T Consensus 459 CGN-F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~ 536 (910)
T KOG1539|consen 459 CGN-FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSS 536 (910)
T ss_pred cCc-eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCC
Confidence 876 8999999999999998776655444 46788999999999999999999999999999998664333221 111
Q ss_pred eeeeeecCCCeEEEEecC-CceeEEeecCCc-eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccC
Q 002407 788 HSYEHFHCQDVSVAIPWP-GVGDTWGLQDTY-LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFD 865 (927)
Q Consensus 788 ~~~~~~~~~~v~vavs~~-g~~~i~~~~d~~-i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d 865 (927)
.....+|-..-.+++..+ -.+.+++..-.. .+++ .+|. .-++.++|||||++|++++ .|
T Consensus 537 ~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f---~gh~------------nritd~~FS~DgrWlisas----mD 597 (910)
T KOG1539|consen 537 ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF---WGHG------------NRITDMTFSPDGRWLISAS----MD 597 (910)
T ss_pred cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh---hccc------------cceeeeEeCCCCcEEEEee----cC
Confidence 222223322222233322 222333322221 1222 2222 2234567999999999998 88
Q ss_pred ccccccCchhhcccc--ccCCCceecccCCCCCcccCCCCCEEEEEcCC-CcEEEeecCC
Q 002407 866 RISATWPEEKLVLTA--RNRSPRTSLDISNGISSSISAWGMVIVTAGLR-GEIRAYQNFG 922 (927)
Q Consensus 866 ~~v~~W~~e~l~~~~--~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~D-G~IrvW~~~g 922 (927)
.++++|+........ ....+.. .+.|||+|.+|||+..| .-|-+|-|-.
T Consensus 598 ~tIr~wDlpt~~lID~~~vd~~~~--------sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 598 STIRTWDLPTGTLIDGLLVDSPCT--------SLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CcEEEEeccCcceeeeEecCCcce--------eeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999975332211 1112222 47999999999999999 7799998743
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=227.55 Aligned_cols=272 Identities=19% Similarity=0.330 Sum_probs=215.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.|...|.+..|. ..++++++.|.+|++|+..++..+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i------------------------------------------ 241 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLI------------------------------------------ 241 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEE------------------------------------------
Confidence 367788999998 558999999999999998665322
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~ 611 (927)
...+.||.+.|+++++.. +.+|++|+.|.++++||..+++|..++. |...|.
T Consensus 242 --------------------------~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~ 295 (537)
T KOG0274|consen 242 --------------------------LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVR 295 (537)
T ss_pred --------------------------EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEE
Confidence 123679999999999976 4899999999999999999999999998 999999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
++... ..++++|+.|.+|++|++.++.++..+. |...|.++.+. +.++++|+.|++|++||+.+++++..+
T Consensus 296 ~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl--- 367 (537)
T KOG0274|consen 296 CLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL--- 367 (537)
T ss_pred EEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee---
Confidence 99985 4778889999999999999999999887 88999999998 889999999999999999999998886
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
.+|...|+++.+.+. ..+++|+.|++|++||.... ........+..-+..+ ...+++|++++.|+.|++
T Consensus 368 ------~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 368 ------SGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIKL 437 (537)
T ss_pred ------cCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEEE
Confidence 489999999988874 38999999999999997655 3333333334444333 356789999999999999
Q ss_pred EECCCCCCccccccc-ceeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 770 WKYEAESRPSRSKSI-TVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 770 Wdl~s~~~~~~~~~~-~~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
||..+++........ ........+. +...++..-++...+|...
T Consensus 438 WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 438 WDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred eecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecc
Confidence 999998776655442 1111211111 2334444455555555443
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=7.9e-22 Score=215.24 Aligned_cols=299 Identities=17% Similarity=0.227 Sum_probs=213.3
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE----EEEEe--cCCceEEEEEccCCCCEEEEEECC
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC----LKIFS--HSDYVTCIQFNPVDDRYFISGSLD 629 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~----~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D 629 (927)
......+.+|+..|.++++.|. -+|++|+.|-+|++||+..... .+.+. ....|.+++|++ ++..|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecC
Confidence 3445678899999999999998 6899999999999999975422 22222 567899999999 88888888888
Q ss_pred CcEEEEeCCCCcEEEe-------------ccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 630 AKVRIWSIPERQVVDW-------------NDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~-------------~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
...+|+|-...+++.. .+|-..+++.+|+|+. ..|++++.||+++|||+...+...... ..+.
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi---k~k~ 312 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI---KTKP 312 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE---eecc
Confidence 9999999776555433 3344679999999965 468999999999999998765433221 1111
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-----ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-----LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-----~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
..+..-.++.++|+++++ +|++|+.||.|.+|+.+. ....-..|.....|+++.||+||++|++-+.|+++++|
T Consensus 313 ~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred CCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 234556789999999998 699999999999999432 23344455556689999999999999999999999999
Q ss_pred ECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC
Q 002407 771 KYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP 850 (927)
Q Consensus 771 dl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP 850 (927)
||+...++.... . +-+.+ ...+.++|||
T Consensus 392 DLrq~kkpL~~~----------------------t--------------------gL~t~----------~~~tdc~FSP 419 (641)
T KOG0772|consen 392 DLRQFKKPLNVR----------------------T--------------------GLPTP----------FPGTDCCFSP 419 (641)
T ss_pred eccccccchhhh----------------------c--------------------CCCcc----------CCCCccccCC
Confidence 999866543210 0 00111 2234567999
Q ss_pred CCCeEEEeccccccC--ccccccCchhhccccccCCCceecccCCCC--CcccCCCCCEEEEEcCCCcEEEee
Q 002407 851 LNGTISSATNSYFFD--RISATWPEEKLVLTARNRSPRTSLDISNGI--SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 851 dg~~Lasas~~~~~d--~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~--~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+.++|+++...-... +.+.+++.-++.. +..+++.... .+.|+|-=+.|..|+.||+++||.
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d~~t~d~-------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFDRMTLDT-------VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEecccccCCCCCceEEEEeccceee-------EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999977322221 2233333322211 1111111111 578999888888888899999986
No 93
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-19 Score=205.00 Aligned_cols=459 Identities=16% Similarity=0.146 Sum_probs=288.5
Q ss_pred eeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 415 sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
.|.......++.+..++.|.+|+... ..++...|.+|+ +.|-.++|+ ++..|++.+.+|.|.-||+.+.+.+..
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC----CceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEE
Confidence 33333344578899999999999876 445556777774 689999999 455788999999999999999987776
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+ ......+++++.+|....++.+..++.+.....+. +.+ ..-..|.-.++.|.++
T Consensus 106 ~-----d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p---------~~I-----------~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 106 I-----DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP---------DKI-----------TYKRSLMRQKSRVLSL 160 (691)
T ss_pred e-----cCCCcceeEEEeCCccceEEeecCCceEEEEecCC---------ceE-----------EEEeecccccceEEEE
Confidence 5 45668899999999999999987777553222111 000 1122344557899999
Q ss_pred EecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe---------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 574 SWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS---------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 574 ~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~---------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
+|+|++. |++|+.||.|++||+..+..+.... ..--|+++.|-. ...|++|..-|+|.+||...+.++
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchh
Confidence 9999954 9999999999999999998877332 223578888874 557999999999999999999988
Q ss_pred Ee-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 644 DW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 644 ~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
+. .-|...|.+++..+++.++++++.|+.|..|...++.... .....+..|...|.+++..++ .+++|+.|
T Consensus 239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~w-----v~~~~r~~h~hdvrs~av~~~---~l~sgG~d 310 (691)
T KOG2048|consen 239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEW-----VINSRRDLHAHDVRSMAVIEN---ALISGGRD 310 (691)
T ss_pred hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccce-----eeeccccCCcccceeeeeecc---eEEeccee
Confidence 74 4456799999999999999999999999999887765421 122334688899999999885 79999999
Q ss_pred CcEEEEECCcceEEEEeecCCcceEE-EEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE
Q 002407 723 SRIRVVDGIDLVHKFKGFRNTNSQIS-ASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA 801 (927)
Q Consensus 723 g~I~VwD~~~~~~~~~~~~~~~~v~s-v~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va 801 (927)
..+.+-................+..+ +...+. ++|+.-=.+..+.+|.+.+..................-+..-...+
T Consensus 311 ~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~-~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~a 389 (691)
T KOG2048|consen 311 FTLAICSSREFKNMDHRQKNLFPASDRVSVAPE-NRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAA 389 (691)
T ss_pred eEEEEccccccCchhhhccccccccceeecCcc-ceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeec
Confidence 99998764431111111111111111 222333 3444444566688888877633322111111111111111122334
Q ss_pred EecCCceeEEe-ecCCceeeccccCCCCCcceeccCC-CcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc-
Q 002407 802 IPWPGVGDTWG-LQDTYLDEFSTANHPPTPVEEISGN-EDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL- 878 (927)
Q Consensus 802 vs~~g~~~i~~-~~d~~i~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~- 878 (927)
++.+|....+. +..-.++.+.... ...+..+... .....+..+.|+-|+..++..+. ......+..+++...
T Consensus 390 iSPdg~~Ia~st~~~~~iy~L~~~~--~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---~~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 390 ISPDGNLIAISTVSRTKIYRLQPDP--NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---NIFSLEEFELETPSFK 464 (691)
T ss_pred cCCCCCEEEEeeccceEEEEeccCc--ceeEEEeccchhhhccceeeEEEecCceEEEEec---ccceeEEEEecCcchh
Confidence 44445443332 2222222222111 0000000000 11134445678888887777651 111122222221100
Q ss_pred -ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 879 -TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 879 -~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
+...+.....-.++ .++.|+||++||.++.+|.|.+|.--+
T Consensus 465 el~~~~~~~~~~~I~---~l~~SsdG~yiaa~~t~g~I~v~nl~~ 506 (691)
T KOG2048|consen 465 ELKSIQSQAKCPSIS---RLVVSSDGNYIAAISTRGQIFVYNLET 506 (691)
T ss_pred hhhccccccCCCcce---eEEEcCCCCEEEEEeccceEEEEEccc
Confidence 11111111111122 589999999999999999999998544
No 94
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=1.9e-20 Score=211.05 Aligned_cols=325 Identities=20% Similarity=0.249 Sum_probs=240.6
Q ss_pred CCeEEEccCceEEEEeccCcccccc----------------eeee----------eEeecCCCCEEEEEEcCCCCEEEEE
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTA----------------LYKC----------QEIQAHNGSIWSIKFSLDGRYLASA 474 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~----------------l~~~----------q~L~gH~~~I~~vafSpdG~~LaSg 474 (927)
..+++++++|..||+|...-+.... .... .-+.||++.|.++.|+|.+..|+++
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA 285 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA 285 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence 4567889999999999875544111 0111 1245999999999999999999999
Q ss_pred eCCCcEEEEecCcCcccc--eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceE
Q 002407 475 GEDCVIHVWQVVESERKG--ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETV 552 (927)
Q Consensus 475 s~DgtVrVWdv~~~~~~~--~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v 552 (927)
+.|.++.||.-.+...+. .+..+...+.....+...|+|++..+++-+..+.+..++.... ..
T Consensus 286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---------------~~ 350 (764)
T KOG1063|consen 286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---------------TF 350 (764)
T ss_pred ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---------------cc
Confidence 999999999877653322 2223333455666788899999888877777776644431000 00
Q ss_pred eecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEEEe----cCCceEEEEEccCCCCEEEEE
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS----HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~~~----h~~~V~~v~fsp~dg~~L~sg 626 (927)
| .....+.||.+.|.+++|+|. .+|++.+.|.|-|||-.-.. +.-+.+. |...++|++|-+ ....|++|
T Consensus 351 w----~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg 425 (764)
T KOG1063|consen 351 W----TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG 425 (764)
T ss_pred e----eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence 0 223346799999999999998 78999999999999876522 2223332 888999999987 67788899
Q ss_pred ECCCcEEEEeCCCC-------------------------------------------cE---------------------
Q 002407 627 SLDAKVRIWSIPER-------------------------------------------QV--------------------- 642 (927)
Q Consensus 627 s~Dg~I~IWDl~t~-------------------------------------------~~--------------------- 642 (927)
.....+|+|+.+.. ..
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 88888999986310 00
Q ss_pred -------------EEeccCCCcEEEEEECCCCCEEEEEECCC-----eEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 643 -------------VDWNDLHEMVTAACYTPDGQGALVGSYKG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 643 -------------v~~~~~~~~V~sla~spdg~~l~tgs~Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
...++|...|.+++.+|+++++++++... .|++|+..+-.....+ ..|.-.|+
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L---------~~HsLTVT 576 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL---------EGHSLTVT 576 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee---------cccceEEE
Confidence 01234556799999999999999987643 4999998876555433 48999999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcc-eEEEE---eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFK---GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~---~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.++|+|++. +|++.+.|.++.+|...+. ...+. ...|...|.++.|+|++++++|+|.|..|+||.....
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999987 8999999999999984321 11111 3345667889999999999999999999999999876
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.9e-21 Score=211.06 Aligned_cols=255 Identities=20% Similarity=0.327 Sum_probs=203.4
Q ss_pred ecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 453 QAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
.-|.+.|+.+.+-|.. ..+||.+..+.|.|||..+........ +
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------------------------~---------- 165 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------------------------G---------- 165 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------------------------c----------
Confidence 3599999999999965 477778889999999986543221110 0
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcE-------EE
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC-------LK 602 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~-------~~ 602 (927)
.-.|-..|.||.+.-+.|+|++. +.|++++.|++|++||+..... ..
T Consensus 166 ------------------------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 166 ------------------------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred ------------------------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 11445577899998899999987 8899999999999999975432 23
Q ss_pred EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC--CcEE-EeccCCCcEEEEEECC-CCCEEEEEECCCeEEEEE
Q 002407 603 IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--RQVV-DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t--~~~v-~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwD 677 (927)
.+. |...|..++|+|.+..+|++++.|+.+.|||+++ .+.. ....|...|++++|+| ++..||+|+.|++|.+||
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwD 301 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWD 301 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEee
Confidence 344 9999999999999999999999999999999995 3332 3456678999999999 556788899999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc--------------eEEEEeecCC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL--------------VHKFKGFRNT 743 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~--------------~~~~~~~~~~ 743 (927)
+++..... ....+|...|..+.|+|....+|++++.|+.+.|||.... ...|..-.|.
T Consensus 302 lRnL~~~l--------h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 302 LRNLNKPL--------HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT 373 (422)
T ss_pred chhcccCc--------eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc
Confidence 99765421 1235899999999999999999999999999999994322 2234445667
Q ss_pred cceEEEEEecCCCE-EEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANGRY-VVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg~~-Lasgs~Dg~I~IWdl~s 774 (927)
..|..+.|+|+..+ |++.++|+.+.||++..
T Consensus 374 ~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 374 AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 88999999998875 66788999999999874
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.7e-21 Score=216.86 Aligned_cols=278 Identities=19% Similarity=0.325 Sum_probs=214.7
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE-EccC-CCCCeecccccCCc
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL-ANGS-PEPTSLSPKHLDNH 526 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~-v~~s-pd~~~la~~~~~~~ 526 (927)
.++|.||...|..+++.++. .++++|.||+++||+-...+...... ..++.+.+.. +.+. .+.-.+..++.+..
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~---~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHA---FEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccccee---cccCcceeeccceeccccCcceEeecccce
Confidence 36789999999999987655 89999999999999976665444221 1223333332 3332 34444556666665
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE-
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF- 604 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~- 604 (927)
+. +|.. ...|+.+|.||...|.+++...++.|++||.|.++++|-+.. +...+
T Consensus 83 i~-----------------------v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~ 137 (745)
T KOG0301|consen 83 II-----------------------VFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQ 137 (745)
T ss_pred EE-----------------------EEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccC
Confidence 52 3333 457899999999999999988888899999999999998754 33334
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
.|+..|+++++.| .+ .++||+.|.+|++|.- ++++. +..|.+.|..+++-+++ .|++++.||.|++|++ ++..
T Consensus 138 gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~ 211 (745)
T KOG0301|consen 138 GHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEV 211 (745)
T ss_pred CcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCce
Confidence 4999999999998 55 8999999999999985 45544 55677899999999876 5889999999999999 5555
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
+..+ .+|..-|+++....++. .++++++|++++||+...+.+.+... ...++++.+-++|. |++|+.
T Consensus 212 l~~~---------~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 212 LLEM---------HGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDECVQVITLP--TTSIWSAKVLLNGD-IVVGGS 278 (745)
T ss_pred eeee---------eccceEEEEEEecCCCC-eEEEecCCceEEEeecCceEEEEecC--ccceEEEEEeeCCC-EEEecc
Confidence 5554 48999999999655544 89999999999999988777776654 55788888888885 677788
Q ss_pred CCcEEEEECCC
Q 002407 764 DSYVYVWKYEA 774 (927)
Q Consensus 764 Dg~I~IWdl~s 774 (927)
||.||||....
T Consensus 279 DG~VrVfT~~k 289 (745)
T KOG0301|consen 279 DGRVRVFTVDK 289 (745)
T ss_pred CceEEEEEecc
Confidence 99999999874
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.6e-21 Score=209.21 Aligned_cols=255 Identities=20% Similarity=0.297 Sum_probs=208.6
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
...+|.+|+..+....+. +.-.+..|.++.|-.||++||.|+..|.|+|+|+.+...+..+ ..|..++..
T Consensus 46 ~S~rvqly~~~~~~~~k~-----~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-----~ah~apv~~ 115 (487)
T KOG0310|consen 46 SSVRVQLYSSVTRSVRKT-----FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-----YAHQAPVHV 115 (487)
T ss_pred cccEEEEEecchhhhhhh-----HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-----hhccCceeE
Confidence 345677888766655443 3456788999999999999999999999999996654344443 577889999
Q ss_pred EccCCCC-CeecccccCCceeeecccccccccccccCcccccceEeecCCCceE-EEccCCCCEEEEEecCC--cEEEEE
Q 002407 509 ANGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC-SFQGHLDDVLDLSWSKS--QHLLSS 584 (927)
Q Consensus 509 v~~spd~-~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~-~l~gH~~~V~~l~~spd--~~L~Sg 584 (927)
..|+|+. +.+++++++..+ .+|+++...+. .+.+|++.|.|.+|+|. ..++||
T Consensus 116 ~~f~~~d~t~l~s~sDd~v~-----------------------k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 116 TKFSPQDNTMLVSGSDDKVV-----------------------KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred EEecccCCeEEEecCCCceE-----------------------EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence 9999974 555555555544 56666655554 78999999999999996 579999
Q ss_pred eCCCcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEE-eccCCCcEEEEEECCCC
Q 002407 585 SMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVD-WNDLHEMVTAACYTPDG 661 (927)
Q Consensus 585 s~DgtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~-~~~~~~~V~sla~spdg 661 (927)
+.||+|++||++.. ..+..+.|..+|..+.|-| .+.+|++++. ..|++||+.+| +.+. ...|+..|+|+.+..++
T Consensus 173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred CCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence 99999999999987 7788889999999999999 8888988875 57999999854 4444 44488999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..|++|+-|+.+++||+.+.+.+..+ .-.++|.+++.+|++. .+++|..+|.+.+-+
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~----------~~~~pvLsiavs~dd~-t~viGmsnGlv~~rr 307 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSW----------KYPGPVLSIAVSPDDQ-TVVIGMSNGLVSIRR 307 (487)
T ss_pred ceEeecccccceEEEEccceEEEEee----------ecccceeeEEecCCCc-eEEEecccceeeeeh
Confidence 99999999999999998888887775 4568899999999876 799999999887763
No 98
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=1.6e-19 Score=196.88 Aligned_cols=420 Identities=14% Similarity=0.140 Sum_probs=285.7
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEE--eCCCcEEEEecCcCcccceeecccccCccccEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSg--s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
.|++|+.. .+..|+ .|-.-...|.|++||+ .|.+|+.- +.+..+.|||+..+....+. ......++
T Consensus 135 hvriWdsv--~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-----k~sne~v~ 204 (626)
T KOG2106|consen 135 HVRIWDSV--TLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-----KTSNEVVF 204 (626)
T ss_pred eeeecccc--cceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-----eeccceEE
Confidence 48889732 333333 3445677899999998 45666664 45678999999887766554 33456788
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC-CCEEEEEecCCcEEEEEeC
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKSQHLLSSSM 586 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd~~L~Sgs~ 586 (927)
.+.|.|...-+......+++.++........ +....|.++. ..|.|++|.+++.++||..
T Consensus 205 ~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~-------------------k~~~~fek~ekk~Vl~v~F~engdviTgDS 265 (626)
T KOG2106|consen 205 LATFHPTDPNLIITCGKGHLYFWTLRGGSLV-------------------KRQGIFEKREKKFVLCVTFLENGDVITGDS 265 (626)
T ss_pred EEEeccCCCcEEEEeCCceEEEEEccCCceE-------------------EEeeccccccceEEEEEEEcCCCCEEeecC
Confidence 8999997555444445555544422211100 1122233332 5699999999999999999
Q ss_pred CCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEEeccCCCcEEEEEECCCCCE
Q 002407 587 DKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~~~V~sla~spdg~~ 663 (927)
+|.|.||+..+.+..+.. .|.+.|.+++... ++. |++|+.|..|..||-.-.+ .+...+..+.|..++-... -
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~--d 341 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKG--D 341 (626)
T ss_pred CceEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCC--c
Confidence 999999999887766544 4999999999987 665 5669999999999932222 2223333457777764433 3
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCC
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~ 743 (927)
|++|+..+.|..=.++++-.+.. .+|......++.+|+.+ ++++++.|+.+++|+..+++-... -.
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v----------~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~---~~ 407 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTV----------QGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKI---IE 407 (626)
T ss_pred EEEeeccceEEEeeecCCceEEE----------EecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEE---ec
Confidence 88898888887777776654443 37888999999999876 899999999999999443333222 24
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec-CCceeEEeecCCceeecc
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW-PGVGDTWGLQDTYLDEFS 822 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~-~g~~~i~~~~d~~i~~~~ 822 (927)
.++.++.|+|.| .||.|...|...+.|.++......... ....+...|.+++..+|+.. ++.++++.+.........
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 567899999999 999999999999999999655544433 44556678888888777654 566777765544322221
Q ss_pred ccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceeccc-----------
Q 002407 823 TANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDI----------- 891 (927)
Q Consensus 823 ~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~----------- 891 (927)
....+ + .+++.+.||+|+++|.+-+ .|--+..|....... ..++..+.+
T Consensus 486 ~~k~~-----------g-s~ithLDwS~Ds~~~~~~S----~d~eiLyW~~~~~~~----~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 486 VGKCS-----------G-SPITHLDWSSDSQFLVSNS----GDYEILYWKPSECKQ----ITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred eeeec-----------C-ceeEEeeecCCCceEEecc----CceEEEEEccccCcc----cceecceeeeeeEEEEEEEE
Confidence 11111 1 4456677999999999976 565666774321100 000111111
Q ss_pred ------CCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 892 ------SNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 892 ------~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
....+++.|.+.++|++|.+-|.|++|++
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y 580 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY 580 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence 11116788999999999999999999993
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-21 Score=196.92 Aligned_cols=249 Identities=18% Similarity=0.292 Sum_probs=199.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|++.|..+...--|+.||||+.|++|+|+.+.....
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------ 45 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------ 45 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence 57999999999988999999999999999999865431
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec-CC--cEEEEEeCCCcEEEEeCCCCcEEEEEe---c
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS-KS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---H 606 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s-pd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h 606 (927)
.+++.+|.||.++|+.++|. |. ..|++++.||.|.||.-.+++-.+... |
T Consensus 46 ------------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 46 ------------------------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred ------------------------ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 14466889999999999995 44 679999999999999999886555443 8
Q ss_pred CCceEEEEEccCC-CCEEEEEECCCcEEEEeCCCC-c---EEEeccCCCcEEEEEECCC---C-----------CEEEEE
Q 002407 607 SDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPER-Q---VVDWNDLHEMVTAACYTPD---G-----------QGALVG 667 (927)
Q Consensus 607 ~~~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~-~---~v~~~~~~~~V~sla~spd---g-----------~~l~tg 667 (927)
...|++|+|.|.+ +-.|++++.||.|.|.+.+.. . ..-...|.-.|++++|.|- | +.|++|
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999943 556889999999999988764 1 1124566778999999985 4 569999
Q ss_pred ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEECCcceEEEE---eec
Q 002407 668 SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS---SSEVLVTSADSRIRVVDGIDLVHKFK---GFR 741 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg---~~~Llsgs~Dg~I~VwD~~~~~~~~~---~~~ 741 (927)
+.|..|+||+...+....... +..|...|..++|.|.- ...|++++.||++.||.........+ .+.
T Consensus 182 GcDn~VkiW~~~~~~w~~e~~-------l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKLERT-------LEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred CCccceeeeecCCcchhhhhh-------hhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 999999999998874433322 36899999999999964 34799999999999998442211111 112
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
....+..++|+..|++|+.++.|+.|.+|.-..
T Consensus 255 f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 255 FPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 345688999999999999999999999997654
No 100
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.3e-21 Score=198.32 Aligned_cols=311 Identities=15% Similarity=0.246 Sum_probs=238.8
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..++|.||++.||.++.......+.+++.|.+.+||.++++.++.++ .+|.+.|.++.|++.+.+++++..+...
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-----~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-----TGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-----cccccceeeEEeccccceEEEccCCcch
Confidence 34677899999999999888889999999999999999999998885 7899999999999999999988877654
Q ss_pred eeecccccccc------cccccCccc--ccceEeec----------CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC
Q 002407 528 EKKRRGRSINR------KSLSLDHMV--VPETVFAL----------SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK 588 (927)
Q Consensus 528 ~~~~~~~~~~~------~~~~~~~~~--~~~~v~~~----------s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg 588 (927)
-++...-.+.. ...+...-. ..+...+. -..|+..|.+|.+.|.+..|... +.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 33331111111 001000000 00000000 12578889999999999999887 7899999999
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEeccCCCcEEEEEECCCCCEEE
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDGQGAL 665 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~~~~~~V~sla~spdg~~l~ 665 (927)
+..+||+++++.+..+. |....+.++-+| ..+++++.+.|-+.++||++.. .+-.+.+|.+.|+++.|.-+. .++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999987 999999999999 9999999999999999999853 223466778999999998766 589
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEE---EEeec
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHK---FKGFR 741 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~---~~~~~ 741 (927)
+|+.|.+|++||+++....... .....+++.++.+..++ +|+.--.+.+|++||+.. .+.. .....
T Consensus 373 SgSDDrTvKvWdLrNMRsplAT---------IRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqg 442 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLAT---------IRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLARLPRTSRQG 442 (481)
T ss_pred ecCCCceEEEeeeccccCccee---------eecCCccceeEeecCCc-eEEeccCCceEEEEecCCCccccCCcccccc
Confidence 9999999999999876533221 14456788888888665 777888889999999532 1111 12334
Q ss_pred CCcceEEEEEecCC--CEEEEEECCCcEEEEECCCC
Q 002407 742 NTNSQISASLTANG--RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 742 ~~~~v~sv~fspdg--~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|...|.+++|..+- .-|++++-|..+.=|++...
T Consensus 443 HrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 443 HRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 56778999997653 34788999999999999764
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=222.89 Aligned_cols=243 Identities=17% Similarity=0.285 Sum_probs=192.1
Q ss_pred EEEc-cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCC--------------------------------C--------
Q 002407 561 CSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS--------------------------------K-------- 598 (927)
Q Consensus 561 ~~l~-gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t--------------------------------~-------- 598 (927)
+.+. .|.+.|++|.|++| .+||+|+.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 89999999999999 7899999999999998754 0
Q ss_pred --------------------cEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 599 --------------------TCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 599 --------------------~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
+++..| +|.+.|.+|.|+. .++|++++.|.+|+||++...+++..+.|.+.|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 001111 3889999999995 77999999999999999999999999999999999999
Q ss_pred CC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE
Q 002407 658 TP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK 736 (927)
Q Consensus 658 sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~ 736 (927)
+| |.+||++|+-||.|+||++...+...... ...-|++++|.|+|+ ..++|+.+|.+++|++..+...
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----------l~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND----------LRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehh----------hhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEE
Confidence 99 88999999999999999999988877643 347799999999987 8999999999999997654333
Q ss_pred EEee--cC------CcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCc
Q 002407 737 FKGF--RN------TNSQISASLTANG-RYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGV 807 (927)
Q Consensus 737 ~~~~--~~------~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~ 807 (927)
...+ .+ ...|+.+.|.|.. ..|++.+.|..|+|||++......+.++.....+ .+.+.+.-+|.
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S-------Q~~Asfs~Dgk 559 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS-------QISASFSSDGK 559 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc-------ceeeeEccCCC
Confidence 3222 11 2369999998754 3577778999999999987776666665433322 23334455677
Q ss_pred eeEEeecCCceeeccc
Q 002407 808 GDTWGLQDTYLDEFST 823 (927)
Q Consensus 808 ~~i~~~~d~~i~~~~~ 823 (927)
..+.+..|..++.|..
T Consensus 560 ~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 560 HIVSASEDSWVYIWKN 575 (712)
T ss_pred EEEEeecCceEEEEeC
Confidence 6777777777777764
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=8e-21 Score=214.16 Aligned_cols=279 Identities=22% Similarity=0.299 Sum_probs=227.5
Q ss_pred ceeeeeccccCCCCCCcccCccccCCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEE-EE
Q 002407 385 TVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWS-IK 463 (927)
Q Consensus 385 ~~~~~~~g~k~~~~~~~~~~~~~~~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~-va 463 (927)
.+.+.+.||+.+. +.+..++. ..+.+++.++++++|.+..++.... ..+.+|.+.|.+ ++
T Consensus 5 ~ls~~l~gH~~DV--------------r~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~---~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 5 KLSHELEGHKSDV--------------RAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLET---HAFEGPKGFIANSIC 65 (745)
T ss_pred eeEEEeccCccch--------------heeEecCC--eEEeecCCCCceeeeeccCcccccc---eecccCcceeeccce
Confidence 3677788887652 11222222 2578899999999999887766543 456889999988 88
Q ss_pred EcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccc
Q 002407 464 FSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (927)
Q Consensus 464 fSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~ 542 (927)
|-+ ++..|++|+.|.+|.||..........+ .+|...|.++....++. +++++.+.....|..
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-----kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~---------- 129 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-----KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---------- 129 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCCchhhh-----hccccceeeeecCCcCc-eEecccccceEEecc----------
Confidence 886 5557999999999999999988877775 68889999999888888 667777776644432
Q ss_pred cCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC
Q 002407 543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 543 ~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~ 621 (927)
++....+.+|+..|+++...|.+.++|||.|++|++|.- ++++++|. |++.|..+++-+ +.
T Consensus 130 --------------~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~--~~ 191 (745)
T KOG0301|consen 130 --------------GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD--DS 191 (745)
T ss_pred --------------hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec--CC
Confidence 244556899999999999999999999999999999986 77888887 999999999986 45
Q ss_pred EEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 622 YFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
.|++++.||.|++|++....+.....|...+.+++..+++..+++++.|++++||+.. .+.+.+. -...
T Consensus 192 ~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~---------lPtt 260 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT---------LPTT 260 (745)
T ss_pred CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe---------cCcc
Confidence 6899999999999999777777889999999999988888999999999999999987 4555432 2344
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|.++.+.++|. |++|+.||.||||.
T Consensus 261 siWsa~~L~NgD--Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 261 SIWSAKVLLNGD--IVVGGSDGRVRVFT 286 (745)
T ss_pred ceEEEEEeeCCC--EEEeccCceEEEEE
Confidence 799999998885 99999999999997
No 103
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=1.1e-19 Score=198.18 Aligned_cols=317 Identities=19% Similarity=0.240 Sum_probs=232.2
Q ss_pred eeeeeecCCCCe-EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc
Q 002407 412 RSSSATDDSQDV-SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER 490 (927)
Q Consensus 412 ~~~sa~~d~~~~-~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~ 490 (927)
..+.+.....+. +++|..+|.|.+|++....+.+ +. .+|.+.|.+++.-.+|.+| ||+.|..|..|| ..-+.
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k----~~-~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k 319 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK----QV-HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRK 319 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe----Ee-eecCCceEEEEEecCccEe-ecCccceEEecc-ccccc
Confidence 344444444333 6899999999999986554443 33 4999999999999999755 599999999999 33333
Q ss_pred cceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCE
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (927)
..+.. .......+..++-.... + ..+...+.+. .-.++........+|....
T Consensus 320 ~r~~e---lPe~~G~iRtv~e~~~d-i-~vGTtrN~iL-----------------------~Gt~~~~f~~~v~gh~del 371 (626)
T KOG2106|consen 320 LRETE---LPEQFGPIRTVAEGKGD-I-LVGTTRNFIL-----------------------QGTLENGFTLTVQGHGDEL 371 (626)
T ss_pred ccccc---CchhcCCeeEEecCCCc-E-EEeeccceEE-----------------------EeeecCCceEEEEecccce
Confidence 33322 22333444444433322 2 2222222221 1122334455677899999
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
+.++.+|+ .+++|++.|+.|+||+ ..+++.......++.|+.|+| .+ .++.|...|...+.|..+..++......
T Consensus 372 wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~ 447 (626)
T KOG2106|consen 372 WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLVTIHTDN 447 (626)
T ss_pred eeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccC-cc-eEEEeeccceEEEEecccceeEEEEecC
Confidence 99999998 8899999999999999 666777767889999999999 77 9999999999999999998888876668
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+++++.|+|+|.+||+|+.|+.|+||-+..+....... .+.+..+|+.+.|++|++ +|.+-+.|-.|..|.
T Consensus 448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~-------~k~~gs~ithLDwS~Ds~-~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV-------GKCSGSPITHLDWSSDSQ-FLVSNSGDYEILYWK 519 (626)
T ss_pred CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe-------eeecCceeEEeeecCCCc-eEEeccCceEEEEEc
Confidence 899999999999999999999999999987655443321 124458999999999987 888999999999997
Q ss_pred CCcce----------------EEEE--eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 730 GIDLV----------------HKFK--GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 730 ~~~~~----------------~~~~--~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
..... .-|. +-.+...+..++-+.+.+++|+|.+.|.|+||...-.
T Consensus 520 ~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 520 PSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred cccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC
Confidence 32111 1111 1123344555666788899999999999999988643
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.87 E-value=2.5e-21 Score=210.26 Aligned_cols=283 Identities=19% Similarity=0.311 Sum_probs=231.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
-.|..-|.++.+|...+++.||| .|.|+|||+.......-+.........+.+..+...||+..|++++....+.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls---- 490 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS---- 490 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee----
Confidence 36999999999999999999998 5789999998664333222222233456788999999999988887766653
Q ss_pred cccccccccccCcccccceEeecCC---CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~---k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
+|++.. .....+..-.-...+|+.+|| +..+++..||.|.|||+.....++.|. |+
T Consensus 491 -------------------iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 491 -------------------IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred -------------------eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC
Confidence 333322 111223333345678899999 778899999999999999999999998 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+.+.||.+++ +|..|-+|+.|.+|+-||+++++.+...+....|.++.++|.+.+|++|-.++.+.|......+..+.
T Consensus 552 DGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql- 629 (705)
T KOG0639|consen 552 DGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL- 629 (705)
T ss_pred CCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceee-
Confidence 9999999999 99999999999999999999999888888889999999999999999999999999888765443222
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..|..-|.++.|.+-|+ ++++++.|..+..|.+.-....|... ....|.++.++.|.+||+||+.|...
T Consensus 630 ---------hlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 630 ---------HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred ---------cccccEEEEEEecccCc-eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcce
Confidence 46888999999999987 89999999999999976556666554 56789999999999999999999998
Q ss_pred EEEEC
Q 002407 768 YVWKY 772 (927)
Q Consensus 768 ~IWdl 772 (927)
.||.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 88875
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.87 E-value=1.5e-20 Score=201.92 Aligned_cols=238 Identities=18% Similarity=0.273 Sum_probs=201.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
.-.|.++...|....++||+.|..+.++|....+
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q---------------------------------------------- 252 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ---------------------------------------------- 252 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh----------------------------------------------
Confidence 3578889998887899999999999999975543
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
.+..|.||...|+.+.++++ ..+++++.|..|+||......+..... |..+|+.+
T Consensus 253 -----------------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l 309 (506)
T KOG0289|consen 253 -----------------------ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL 309 (506)
T ss_pred -----------------------hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee
Confidence 23467899999999999999 779999999999999998776655554 99999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
..+| .+.||++++.|++..+.|++++..+....++ -.+++++|+|||..|.+|..|+.|+|||+........+
T Consensus 310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F--- 385 (506)
T KOG0289|consen 310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF--- 385 (506)
T ss_pred eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC---
Confidence 9999 9999999999999999999999887655553 36999999999999999999999999999988866655
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
.+|.++|..++|+.+| ++|++++.|+.|++||+++.. ..+... ....+.+++|.+.|.+|+.++.|=.||
T Consensus 386 ------pght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 386 ------PGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ------CCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeecc-ccccceeEEEcCCCCeEEeecceeEEE
Confidence 4899999999999976 589999999999999987654 233332 233688999999999999998877777
Q ss_pred EEECCC
Q 002407 769 VWKYEA 774 (927)
Q Consensus 769 IWdl~s 774 (927)
+++-.+
T Consensus 458 ~~~k~~ 463 (506)
T KOG0289|consen 458 ICKKKT 463 (506)
T ss_pred EEeccc
Confidence 776443
No 106
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.2e-21 Score=194.90 Aligned_cols=239 Identities=16% Similarity=0.303 Sum_probs=195.4
Q ss_pred ceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCc
Q 002407 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 411 ~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
-.-++-.......+++...+|.+++|+...+ -.+++.++.|+..|.++.|++ ++..+++++.|++|++|+..-.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~- 137 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP- 137 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence 3345555566677888899999999994433 235677899999999999998 5667888899999999986422
Q ss_pred ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCC
Q 002407 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569 (927)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~ 569 (927)
+.+++|.||..-
T Consensus 138 --------------------------------------------------------------------~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 138 --------------------------------------------------------------------NSVQTFNGHNSC 149 (311)
T ss_pred --------------------------------------------------------------------cceEeecCCccE
Confidence 345678899999
Q ss_pred EEEEEecCC--cEEEEEeCCCcEEEEeCCC-CcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EEE
Q 002407 570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VVD 644 (927)
Q Consensus 570 V~~l~~spd--~~L~Sgs~DgtV~lWDl~t-~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v~ 644 (927)
|...+|+|. +.++++|.|+++++||++. ++.+.+..|...|.|+.|+..+.+.|++|+.|+.|++||++.-+ +..
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 999999997 8899999999999999985 44555444999999999999899999999999999999998754 234
Q ss_pred eccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 645 WNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
+..|.-.|..+.|+|.. ..|++++.|-+++|||...+....... ..|..-+..+.|++..+.+++.++.|.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--------~~HtEFv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--------DHHTEFVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--------hccceEEeccccccccCceeeeccccc
Confidence 56777899999999954 578899999999999998554333211 368888999999998777999999999
Q ss_pred cEEEEEC
Q 002407 724 RIRVVDG 730 (927)
Q Consensus 724 ~I~VwD~ 730 (927)
.++||+.
T Consensus 302 ~l~Vw~p 308 (311)
T KOG0277|consen 302 LLYVWNP 308 (311)
T ss_pred ceeeecc
Confidence 9999983
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=1.9e-19 Score=196.91 Aligned_cols=277 Identities=15% Similarity=0.174 Sum_probs=197.9
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+++++..++.|.+|+..+++.. +.+..|.. +.+++|+|+|++| ++++.++.|++||+.+++....+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~-----~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------- 69 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVT-----RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL------- 69 (300)
T ss_pred EEEEecCCCEEEEEECCCCceE-----EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-------
Confidence 4566778889999998765432 34455544 6789999999976 56778999999998765422211
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
..+. .+..++|+|+ +.
T Consensus 70 --------------------------------------------------------------~~~~-~~~~~~~~~~g~~ 86 (300)
T TIGR03866 70 --------------------------------------------------------------PSGP-DPELFALHPNGKI 86 (300)
T ss_pred --------------------------------------------------------------cCCC-CccEEEECCCCCE
Confidence 1111 2345788888 44
Q ss_pred EE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCcEEEeccCCCcEEEEEEC
Q 002407 581 LL-SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 581 L~-Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~~v~~~~~~~~V~sla~s 658 (927)
++ ++..++.|++||+.+.+.+..+.+...+.+++|+| ++.+++++..++ .+.+||..+++.+........+..++|+
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s 165 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFT 165 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEEC
Confidence 54 44568999999999988888887666688999999 999999888775 4677899888776654445567889999
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 659 PDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 659 pdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
|++++|++++ .++.|++||+.+++....+...... ..........++|+|++...+++...++.|.+||........
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG--VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc--cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9999886654 5899999999998766554321100 001112345788999998545555667789999975433221
Q ss_pred EeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCCcc
Q 002407 738 KGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~~~ 779 (927)
. ......+.+++|+|+|++|+++ ..++.|+|||+++++...
T Consensus 244 ~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 244 Y-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred E-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 1 1223468899999999999886 468999999999866433
No 108
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=3.2e-21 Score=206.25 Aligned_cols=267 Identities=18% Similarity=0.256 Sum_probs=215.7
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+.+++|..+..|++|+..... .-..++|.|-.+.|+.++|.++++++++++.|+.+++|++...+...++ .
T Consensus 187 sdtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-----s 258 (459)
T KOG0288|consen 187 SDTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-----S 258 (459)
T ss_pred cchhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-----c
Confidence 3567899999999999987554 3345778899999999999999999999999999999999998887776 6
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH 580 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~ 580 (927)
+|...|.++.+......++.+..+..+..+...+....+ + .-....+.+|... ...
T Consensus 259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k----------------------t-~l~~S~cnDI~~~-~~~ 314 (459)
T KOG0288|consen 259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK----------------------T-VLPGSQCNDIVCS-ISD 314 (459)
T ss_pred ccccceeeehhhccccceeeccccchhhhhhhhhhheec----------------------c-ccccccccceEec-cee
Confidence 799999999988877767777777766433332211110 0 0112233344433 345
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-----CcEEEE
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-----EMVTAA 655 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-----~~V~sl 655 (927)
+++|-.|++|++||+++..+.......+.|+++..++ ++..|++++.|.++.+.|+++.++...+... ...+.+
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 7889999999999999999999999778999999999 9999999999999999999999887654432 458999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
.|+|++.|+++|+.||.|+||++.++++...... ......|+++.|+|.|. .+++++.++.+.+|
T Consensus 394 vfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-------s~s~~aI~s~~W~~sG~-~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-------STSNAAITSLSWNPSGS-GLLSADKQKAVTLW 458 (459)
T ss_pred EECCCCceeeeccCCCcEEEEEccCceEEEEecc-------CCCCcceEEEEEcCCCc-hhhcccCCcceEec
Confidence 9999999999999999999999999998877653 12223799999999987 79999999999998
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=7.5e-20 Score=209.81 Aligned_cols=346 Identities=18% Similarity=0.218 Sum_probs=267.5
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
..+...|+..++++|...|.+-+||+..+.+... ...+|.+.|..+.|.|....|+|++.|..+++|=.+++....
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v----~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV----TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeee----eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 4567788888999999999999999987766543 336899999999999999999999999999999888766555
Q ss_pred eeecccccCccccEEEEccC-CCCCeecccccCCceeeecccc-----------------ccccc---ccccCccc----
Q 002407 493 ELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGR-----------------SINRK---SLSLDHMV---- 547 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~s-pd~~~la~~~~~~~i~~~~~~~-----------------~~~~~---~~~~~~~~---- 547 (927)
.++. ...+|..+..++.+. ..+..+.+...+..+....... .+... ......+.
T Consensus 325 R~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 325 RLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred hhee-eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 4432 235777777777776 5677777777766432221110 00000 00000000
Q ss_pred ------------------ccceEeecCCCceEE-EccCC------CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE
Q 002407 548 ------------------VPETVFALSDKPICS-FQGHL------DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (927)
Q Consensus 548 ------------------~~~~v~~~s~k~i~~-l~gH~------~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~ 601 (927)
...+.|....+.+.. .-.+. ..+++++.++. ++.+.|+..|+|-+|++++|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 012344444443311 11233 67889999888 67788899999999999999988
Q ss_pred EEE----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 602 KIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 602 ~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
..| .|..+|+.++... .++.+++++.+|.+++||...+.++........++++.++.....++++..|-.|+++|
T Consensus 484 ~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 888 3999999999987 78899999999999999999999888888889999999999999999999999999999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
+.+.+....+ .+|...|++++|+|+|+ +|++++.|++|++||...... +....-..+++++.|+|+|.+
T Consensus 563 ~~t~kvvR~f---------~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~~l-ID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 563 VVTRKVVREF---------WGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTGTL-IDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred chhhhhhHHh---------hccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCcce-eeeEecCCcceeeEECCCCCE
Confidence 9998887765 48999999999999998 899999999999999654332 233334677899999999999
Q ss_pred EEEEECC-CcEEEEECCCC
Q 002407 758 VVSASED-SYVYVWKYEAE 775 (927)
Q Consensus 758 Lasgs~D-g~I~IWdl~s~ 775 (927)
||+...| .-|++|--.+.
T Consensus 632 LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 632 LATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred EEEEEecCceEEEEEchhH
Confidence 9999988 55999986653
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-20 Score=210.39 Aligned_cols=274 Identities=17% Similarity=0.249 Sum_probs=214.2
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-- 647 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-- 647 (927)
.-+.|+..+.|+.+. ...|++|+..++....... +...|+++.|++ ++.+|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 346788656666554 4679999999999777776 489999999999 99999999999999999998877666444
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
|...|.+++|. +..+.+|+.++.|.++|++..+..... ...|...|..+.|++++. ++++|+.|+.+.|
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--------~~~H~qeVCgLkws~d~~-~lASGgnDN~~~I 327 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--------LQGHRQEVCGLKWSPDGN-QLASGGNDNVVFI 327 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--------hhcccceeeeeEECCCCC-eeccCCCccceEe
Confidence 46799999998 678999999999999999987655441 258999999999999987 8999999999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecC-CCEEEEEE--CCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTAN-GRYVVSAS--EDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspd-g~~Lasgs--~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
||......++....|...|..++|+|- ..+||+|+ .|+.|++||..++........ .
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------------g-------- 387 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------------G-------- 387 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------------C--------
Confidence 998777777777778899999999994 56888875 699999999987654332210 0
Q ss_pred CCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc---cccc
Q 002407 805 PGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV---LTAR 881 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~---~~~~ 881 (927)
.++..+.||+..+-|+++- ++.+..+.+|....+. ...+
T Consensus 388 ------------------------------------sQVcsL~Wsk~~kEi~sth--G~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 388 ------------------------------------SQVCSLIWSKKYKELLSTH--GYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred ------------------------------------CceeeEEEcCCCCEEEEec--CCCCCcEEEEeccccceeeeecC
Confidence 1122234666666555543 2445567778764332 2457
Q ss_pred cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCCC
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGL 923 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~gl 923 (927)
|...+. .+++||||..||||+.|.++|+|+.|+.
T Consensus 430 H~~RVl--------~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 430 HTSRVL--------YLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CcceeE--------EEEECCCCCEEEEecccCcEEeccccCC
Confidence 777665 3689999999999999999999999984
No 111
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=8.9e-20 Score=204.84 Aligned_cols=321 Identities=15% Similarity=0.244 Sum_probs=244.4
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEEEecCcC
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-----------GRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-----------G~~LaSgs~DgtVrVWdv~~~ 488 (927)
....+.+--.+..+.+|+.. +..+.-++..+--|...||.|.--|. -..++|++.|++||+|++..+
T Consensus 335 t~~klscVYndhSlYvWDvr--D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVR--DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCceEEEEEcCceEEEEecc--ccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccc
Confidence 44556666677778888764 44455555666779999999987762 126899999999999999763
Q ss_pred cccce----eec----------------------------ccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 489 ERKGE----LLE----------------------------KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 489 ~~~~~----l~~----------------------------~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
..-.. ++. ...-+....+.+++.+|++..|+++...+.+.
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr-------- 484 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR-------- 484 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE--------
Confidence 21111 000 00012345678999999999999998888773
Q ss_pred cccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCc
Q 002407 537 NRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDY 609 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t~-~~~~~~~-h~~~ 609 (927)
++++.. .....+..|...|.||.|+.- .+|++++.|..|.|+|+... .+++++. |...
T Consensus 485 ---------------Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 485 ---------------VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred ---------------EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 344432 445567889999999999863 67999999999999999765 3445555 9999
Q ss_pred eEEEEEccCCC--CEEEEEECCCcEEEEeCCC----CcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 610 VTCIQFNPVDD--RYFISGSLDAKVRIWSIPE----RQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 610 V~~v~fsp~dg--~~L~sgs~Dg~I~IWDl~t----~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
|++|.|.. .+ ..+++++.|..|. |+... +.+.. ..-.+..+..++..|..+++++++.|..|+||++..
T Consensus 550 ITsvKFa~-~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 550 ITSVKFAC-NGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred eeEEEEee-cCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 99999987 54 6689999998775 34332 22221 111235788999999999999999999999999999
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las 760 (927)
++....+.- ...|.+....+...|.|- +|++...|.++.++|............|...|+.+.|.+|-++|++
T Consensus 628 gKq~k~FKg------s~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 628 GKQVKSFKG------SRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred cceeeeecc------cccCCCceEEEEECCCcc-EEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhee
Confidence 998887653 246778888999999886 8999999999999997665555566667888999999999999999
Q ss_pred EECCCcEEEEECCC
Q 002407 761 ASEDSYVYVWKYEA 774 (927)
Q Consensus 761 gs~Dg~I~IWdl~s 774 (927)
.+.||.|.||.+..
T Consensus 701 vsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 701 VSGDGCIFVWKLPL 714 (1080)
T ss_pred ecCCceEEEEECch
Confidence 99999999999975
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.6e-20 Score=192.09 Aligned_cols=278 Identities=18% Similarity=0.261 Sum_probs=210.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccc
Q 002407 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (927)
Q Consensus 459 I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~ 538 (927)
-.|+.|++.|.+||.|+.||.|.|||+.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------------------------------------ 57 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------------------------------------ 57 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------------------------------------
Confidence 78999999999999999999999999876431
Q ss_pred cccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEcc
Q 002407 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP 617 (927)
Q Consensus 539 ~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp 617 (927)
-..+.+|..+|++++|+++ .+|+|+|.|..|.+||+..|.+++.+....+|+.++|+|
T Consensus 58 ---------------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp 116 (405)
T KOG1273|consen 58 ---------------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHP 116 (405)
T ss_pred ---------------------hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeecc
Confidence 1235679999999999999 679999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCcEEEe--ccC---CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccc
Q 002407 618 VDDRYFISGSLDAKVRIWSIPERQVVDW--NDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ 692 (927)
Q Consensus 618 ~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~~~---~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~ 692 (927)
.+.+.+++.-.+..-.+-++..++-..+ ... .....+..|.+.|+++++|...|.+.+||..+.+++..+.+
T Consensus 117 ~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri--- 193 (405)
T KOG1273|consen 117 RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI--- 193 (405)
T ss_pred ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee---
Confidence 7777777776666666666655332211 111 12233446899999999999999999999999988877653
Q ss_pred cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-----------EEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-----------HKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 693 ~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-----------~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.....|..+.|+..+. .|++-+.|..||.|+..++. ++++...+...-.+++|+.+|.|++.+
T Consensus 194 -----ts~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 194 -----TSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred -----chheeeeEEEEeccCc-EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 2246788889988876 89999999999999954332 222233344555689999999999888
Q ss_pred EC-CCcEEEEECCCCCCcccccccc-eeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 762 SE-DSYVYVWKYEAESRPSRSKSIT-VTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 762 s~-Dg~I~IWdl~s~~~~~~~~~~~-~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
+. -..+|||.-..+.....+.+.. .......+|+-...++.-..|.+++|...
T Consensus 268 s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~ 322 (405)
T KOG1273|consen 268 SARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVV 322 (405)
T ss_pred cccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEee
Confidence 74 4559999999988766554433 22222334544444454466778888744
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=9.3e-20 Score=189.38 Aligned_cols=264 Identities=17% Similarity=0.248 Sum_probs=208.3
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
.....++.++.++.+++|+....++...+ -|..+|.+++|.++ ..+++|+.||.|+++|+.++..
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~------~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-------- 87 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKF------KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-------- 87 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhhe------ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc--------
Confidence 34455677789999999998877665544 49999999999975 5799999999999999976541
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
..+..|...|.||.+++-
T Consensus 88 --------------------------------------------------------------~~igth~~~i~ci~~~~~ 105 (323)
T KOG1036|consen 88 --------------------------------------------------------------DQIGTHDEGIRCIEYSYE 105 (323)
T ss_pred --------------------------------------------------------------eeeccCCCceEEEEeecc
Confidence 123459999999999986
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTA 654 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~s 654 (927)
+.+++|+.|++|++||.+...+...+.....|.++.. .++.|++|+.+..|.+||+++..... .-..+..+.+
T Consensus 106 ~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 106 VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred CCeEEEcccCccEEEEeccccccccccccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 9999999999999999998777777777779999987 56889999999999999999865443 3445578999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc--cc--ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL--QN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~--~~--~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++.|++..+++++-+|.|.+=.++...........+ +. .+......+|++|+|+|--. .|++|+.||.|.+||.
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccC
Confidence 9999999999999999998876665542222211111 11 11122335799999999744 7999999999999998
Q ss_pred CcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 731 ~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.........+.....|.+++|+.+|..||+++.
T Consensus 262 ~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 262 FNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 766666666666778999999999999999974
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8.7e-21 Score=212.34 Aligned_cols=278 Identities=18% Similarity=0.280 Sum_probs=225.2
Q ss_pred CCeEEEccCceEEEEeccCccccc-ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~-~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
..++++|..++.|+.|+.....-. .......++.|.+.|..|....+|+.|+++|.|-+|++|+...+. .
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---~------ 107 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---T------ 107 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---c------
Confidence 347899999999999986533221 112356788999999999999999999999999999999975431 0
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe-cCC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW-SKS 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~-spd 578 (927)
-++.++..|.+-|.||++ -++
T Consensus 108 ----------------------------------------------------------~c~stir~H~DYVkcla~~ak~ 129 (735)
T KOG0308|consen 108 ----------------------------------------------------------FCMSTIRTHKDYVKCLAYIAKN 129 (735)
T ss_pred ----------------------------------------------------------hhHhhhhcccchheeeeecccC
Confidence 122345679999999999 555
Q ss_pred -cEEEEEeCCCcEEEEeCCCCc--EEEEE----------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKT--CLKIF----------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VD 644 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~--~~~~~----------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~ 644 (927)
..+++|+.|+.|.|||+.++. .+..+ ++...|++++.++ .+..|++|+..+.|++||.++++. +.
T Consensus 130 ~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 130 NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceee
Confidence 778999999999999999872 33322 2677899999999 889999999999999999999764 45
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
+.+|.+.|.++..++||..+++++.||+|++||+...+++.++. .|...|.+++.+|+-. .+.+|+.|+.
T Consensus 209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~---------vH~e~VWaL~~~~sf~-~vYsG~rd~~ 278 (735)
T KOG0308|consen 209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI---------VHKEGVWALQSSPSFT-HVYSGGRDGN 278 (735)
T ss_pred eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE---------eccCceEEEeeCCCcc-eEEecCCCCc
Confidence 67888999999999999999999999999999999999988864 6888899999999776 8999999999
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
|..-|+++............++..+..+...+-+-+++.|+.|+-|..+...
T Consensus 279 i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9999977654444444556677777776555555777889999999887543
No 115
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=4.3e-18 Score=192.14 Aligned_cols=425 Identities=14% Similarity=0.152 Sum_probs=274.3
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
..+.++-+.--...|.+|+|+.+.+.||.+-.||.|.||++...-........ +....+-.++|.+.+.++..+ .+
T Consensus 14 ~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g---~~drsIE~L~W~e~~RLFS~g-~s 89 (691)
T KOG2048|consen 14 QVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG---PEDRSIESLAWAEGGRLFSSG-LS 89 (691)
T ss_pred EEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec---CCCCceeeEEEccCCeEEeec-CC
Confidence 34444445556789999999999999999999999999999886544444332 444567778888666665554 44
Q ss_pred CceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
+.+. -|++ +.++...+....+.|++++.+|. ..++.|+.||.+.++++..++...
T Consensus 90 g~i~-----------------------EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~ 146 (691)
T KOG2048|consen 90 GSIT-----------------------EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY 146 (691)
T ss_pred ceEE-----------------------EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence 4442 2232 45777778888899999999998 778999999988888888887654
Q ss_pred EEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-----eccC----CCcEEEEEECCCCCEEEEEECC
Q 002407 603 IFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-----WNDL----HEMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 603 ~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-----~~~~----~~~V~sla~spdg~~l~tgs~D 670 (927)
... .++.|.++.|+| ++..|++|+.||.|++||...+..+. .... ...|+++.|-.++ .|++|...
T Consensus 147 ~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~ 224 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSA 224 (691)
T ss_pred EeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCC
Confidence 432 568999999999 99999999999999999999887655 2222 2357888888665 69999999
Q ss_pred CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcce
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQ 746 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v 746 (927)
|+|.+||...+.+.+.+ ..|...|.+++..+++. .+++++.|++|..|.... .+.......|...+
T Consensus 225 G~V~FWd~~~gTLiqS~---------~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv 294 (691)
T KOG2048|consen 225 GTVTFWDSIFGTLIQSH---------SCHDADVLALAVADNED-RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV 294 (691)
T ss_pred ceEEEEcccCcchhhhh---------hhhhcceeEEEEcCCCC-eEEEccCCCceEEEEecCCccceeeeccccCCcccc
Confidence 99999999999888775 47899999999999866 799999999998887332 22322333455668
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec-CCceeEEeecCCceeeccccC
Q 002407 747 ISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW-PGVGDTWGLQDTYLDEFSTAN 825 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~-~g~~~i~~~~d~~i~~~~~~~ 825 (927)
.+++..++ .|++|+.|..+.+=.............................+.+.| ...+.+|........- . ..
T Consensus 295 rs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g-~-~~ 370 (691)
T KOG2048|consen 295 RSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQG-E-YN 370 (691)
T ss_pred eeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccc-c-cC
Confidence 88888776 899999999999877665333222111111111111112222334555 3444555433221100 0 00
Q ss_pred CCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCE
Q 002407 826 HPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMV 905 (927)
Q Consensus 826 ~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~v 905 (927)
...+....+ ..-.....++.||+|.+||-..- ..-+..++-+............+....+.+ .+.|+-|+..
T Consensus 371 ~~~Llkl~~---k~~~nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~---~i~ftid~~k 442 (691)
T KOG2048|consen 371 YIHLLKLFT---KEKENISCAAISPDGNLIAISTV--SRTKIYRLQPDPNVKVINVDDVPLALLDAS---AISFTIDKNK 442 (691)
T ss_pred hhhheeeec---CCccceeeeccCCCCCEEEEeec--cceEEEEeccCcceeEEEeccchhhhccce---eeEEEecCce
Confidence 000001111 11133444568999999998651 111122222211110111111111111111 4677878877
Q ss_pred EEEEc-CCCcEEEeec
Q 002407 906 IVTAG-LRGEIRAYQN 920 (927)
Q Consensus 906 LvTgs-~DG~IrvW~~ 920 (927)
++-++ .++.+.+++.
T Consensus 443 ~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 443 LFLVSKNIFSLEEFEL 458 (691)
T ss_pred EEEEecccceeEEEEe
Confidence 77777 6677777664
No 116
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=195.74 Aligned_cols=259 Identities=22% Similarity=0.295 Sum_probs=201.5
Q ss_pred ecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 453 QAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG--~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.+|.+.|+.+.-++-| .+.|+-++.|.|.||++...-. .+. ..+.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~---------------------------~~~~---- 194 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALS---------------------------EPGL---- 194 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhc---------------------------Cccc----
Confidence 5688999999888755 4777888999999999854211 000 0000
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEE----EE
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK----IF 604 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~----~~ 604 (927)
.+-....+++.++.+|...-+.|+|||- +.|++|..-+.|++|...++.-.. ..
T Consensus 195 --------------------~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~ 254 (440)
T KOG0302|consen 195 --------------------EVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT 254 (440)
T ss_pred --------------------cccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccc
Confidence 0001234789999999999999999995 889999999999999999875432 22
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~---~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
.|+..|-.++|+|.....|++|+.||+|+|||++.+ .++....|...|+.|.|+....+|++|+.||+++|||++..
T Consensus 255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred ccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc
Confidence 399999999999988899999999999999999988 56667888899999999999889999999999999999876
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc------------------ceEEEEeecCC
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID------------------LVHKFKGFRNT 743 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~------------------~~~~~~~~~~~ 743 (927)
+.... ...++.|..+|+++.|+|.....|++++.|.+|.|||+.. .-+.+-.|...
T Consensus 335 ~~~~p------VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQ 408 (440)
T KOG0302|consen 335 KSGQP------VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQ 408 (440)
T ss_pred cCCCc------ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecch
Confidence 54311 1223589999999999998888999999999999999311 11223334455
Q ss_pred cceEEEEEecCC-CEEEEEECCCcEEEEE
Q 002407 744 NSQISASLTANG-RYVVSASEDSYVYVWK 771 (927)
Q Consensus 744 ~~v~sv~fspdg-~~Lasgs~Dg~I~IWd 771 (927)
..+..+.|++.- -+|++.+.|| +.||.
T Consensus 409 ke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 409 KEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred hHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 667778898863 4788888888 66665
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.6e-21 Score=215.67 Aligned_cols=248 Identities=19% Similarity=0.296 Sum_probs=201.6
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 458 SIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 458 ~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
.+..|+|.. +.++|||++..|.|.+||+....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~----------------------------------------------- 121 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI----------------------------------------------- 121 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc-----------------------------------------------
Confidence 345677764 56799999999999999986421
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
..+.+..|..|...|+++.|++. .+|++|+.||+|++||++..+...++. ....|..|
T Consensus 122 -------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 122 -------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred -------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 11334567789999999999987 789999999999999999988877776 77889999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
+|+|..+++|+++...|.|++||++.... .++..|.+.|.++.|+|++.+||+|+.|+.|+|||+.+.+......+
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-- 260 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-- 260 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--
Confidence 99998899999999999999999987543 35778889999999999999999999999999999987765544432
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEE-EeecCCcceEEEEEec-CCCEEEEEECCCcE
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTA-NGRYVVSASEDSYV 767 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I 767 (927)
....+|.++.|-|..+++|++++ .|..|+|||.+.....+ ....|...++.++|.. |-..|.+++.||.|
T Consensus 261 ------nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 261 ------NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ------eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 45678999999999988888875 68899999976544333 3334566677888865 45678999999999
Q ss_pred EEEECCCCCCcc
Q 002407 768 YVWKYEAESRPS 779 (927)
Q Consensus 768 ~IWdl~s~~~~~ 779 (927)
..-.+++...+.
T Consensus 335 ~qh~~knat~pi 346 (839)
T KOG0269|consen 335 LQHLFKNATTPI 346 (839)
T ss_pred HHhhhhcccChh
Confidence 888777765543
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=5.2e-20 Score=199.89 Aligned_cols=250 Identities=16% Similarity=0.276 Sum_probs=190.7
Q ss_pred CCeEEEccCceEEEEeccCccccc-----ceeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCccccee
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT-----ALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~-----~l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
..+++++...+.|.+|+...-.-. ....-..|.||++.=..|+|++.. -+|++++.|++|++||+........
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~- 215 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK- 215 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc-
Confidence 345667777778888876432111 112223789999988899999954 3899999999999999865432100
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
.-.+...+.+|...|.+++
T Consensus 216 -------------------------------------------------------------~~~p~~~~~~h~~~VeDV~ 234 (422)
T KOG0264|consen 216 -------------------------------------------------------------VVDPKTIFSGHEDVVEDVA 234 (422)
T ss_pred -------------------------------------------------------------cccceEEeecCCcceehhh
Confidence 0145567889999999999
Q ss_pred ecCC--cEEEEEeCCCcEEEEeCCC--CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEecc
Q 002407 575 WSKS--QHLLSSSMDKTVRLWHLSS--KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWND 647 (927)
Q Consensus 575 ~spd--~~L~Sgs~DgtV~lWDl~t--~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~~ 647 (927)
|++- ..|++++.|+.+.|||+++ .++.+... |...|+|++|+|.++.+|++|+.|++|++||+++. .+..+..
T Consensus 235 ~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 235 WHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 9986 7899999999999999995 44444444 99999999999999999999999999999999874 3456777
Q ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecc--cccc---cccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 648 LHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSP--INLQ---NKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 648 ~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~--i~~~---~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
|...|..|.|+|+. ..|++++.|+.+.+||+..-...+... -..+ .-...+|...|..+.|+|..+..|++.+.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 88999999999964 578888999999999997532221100 0000 00114899999999999999988999999
Q ss_pred CCcEEEEECCc
Q 002407 722 DSRIRVVDGID 732 (927)
Q Consensus 722 Dg~I~VwD~~~ 732 (927)
|+.+.||....
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 99999998543
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.4e-20 Score=202.98 Aligned_cols=305 Identities=17% Similarity=0.308 Sum_probs=222.7
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCC--CeecccccCCc
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEP--TSLSPKHLDNH 526 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~--~~la~~~~~~~ 526 (927)
...+.||++.|.||...|.|.+||+|+.||+|+||.+.++.++..+.. ...|.+++|+|.+ .+|+++.....
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~------d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF------DSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee------cceeEEEEecCCCCceeEEEEecCce
Confidence 345789999999999999999999999999999999999999988752 2478899999874 34444433332
Q ss_pred eeee-cccccccc---cc-c-ccCcccc---cceEeecC-----CCceEEEccCCCCEEEEEecCC-cEEEEEeCC---C
Q 002407 527 LEKK-RRGRSINR---KS-L-SLDHMVV---PETVFALS-----DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---K 588 (927)
Q Consensus 527 i~~~-~~~~~~~~---~~-~-~~~~~~~---~~~v~~~s-----~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---g 588 (927)
+... ..+..+.. .. + ....... ....|.-. .+-++..-.|...|..|.|+.. .+|++...+ .
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 1111 11100000 00 0 0000000 01122221 2335666779999999999998 778877654 5
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEE
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~t 666 (927)
.|.|.++........|. ..+.|.++.|+| ...+|++++. ..|+|||+..+.++. ....-..|..++++|.|..|++
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 69999998877776665 678899999999 7777777665 679999998877665 4455578999999999999999
Q ss_pred EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--------c---ceE
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--------D---LVH 735 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--------~---~~~ 735 (927)
|+.|+.+..||+.-...... ..+.|...+++++|++.-+ ++++++.||++.||... . .+.
T Consensus 625 gs~d~k~~WfDldlsskPyk--------~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYK--------TLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred ecCCCeeEEEEcccCcchhH--------Hhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence 99999999999976533222 2357899999999999876 89999999999998721 1 233
Q ss_pred EEEeecC--CcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 736 KFKGFRN--TNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 736 ~~~~~~~--~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
.+.+|.. ...|..+.|+|...+|++++.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 4444432 2447888999999999999999999998
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2e-19 Score=195.06 Aligned_cols=271 Identities=18% Similarity=0.298 Sum_probs=205.6
Q ss_pred eEEEccCceEEEEeccCccccc-ce-----------eeeeEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLT-AL-----------YKCQEI-QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~-~l-----------~~~q~L-~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
+.++++.++.|.-|+..++.-. .. ...+.- ++|...|.+++.|+||+|||||+.|..|.||+..+.+
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence 5677777778877776655422 00 011111 3899999999999999999999999999999999988
Q ss_pred ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCCC
Q 002407 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHLD 568 (927)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~ 568 (927)
.+..+ .+|...|..++|.....-+.+++.+..+ .+|.+.. ..+.++.||.+
T Consensus 236 hv~~~-----~ghr~~V~~L~fr~gt~~lys~s~Drsv-----------------------kvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 236 HVKVF-----KGHRGAVSSLAFRKGTSELYSASADRSV-----------------------KVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred hhhcc-----cccccceeeeeeecCccceeeeecCCce-----------------------EEEehhHhHHHHHHhCCcc
Confidence 77764 6888999999998887777777677666 3444332 34567889999
Q ss_pred CEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 569 DVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
.|..|....-.+++|.+ .|.++++|++.....+....+...+.|++|- +...|++|+.+|.|.+|++...+++....
T Consensus 288 ~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 288 GVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred ceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEee
Confidence 99999887776666655 9999999999665555555688999999997 57789999999999999998887764321
Q ss_pred --C-----------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 648 --L-----------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 648 --~-----------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
| +.+|++++..|...++++|+.+|.|++|-+..+-........ ....+-|++++|+++|..
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~------ls~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS------LSLVGFVNSLAFSNSGKR 439 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee------cccccEEEEEEEccCCCE
Confidence 1 138999999999999999999999999999987322211111 245678999999999985
Q ss_pred EEEEEECCCcEEEEE
Q 002407 715 EVLVTSADSRIRVVD 729 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD 729 (927)
+++..+....+--|-
T Consensus 440 ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 440 IVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEecccccccceee
Confidence 455445555554453
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.2e-18 Score=176.76 Aligned_cols=276 Identities=20% Similarity=0.207 Sum_probs=207.9
Q ss_pred eecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCcCcccce
Q 002407 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGE 493 (927)
Q Consensus 416 a~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~--DgtVrVWdv~~~~~~~~ 493 (927)
.-++....+.+.+.+-.+++|+...+... +++..++-.|..++|......++.++. |.+||.-++.+.
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~-----~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN----- 90 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQV-----KTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN----- 90 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCcee-----eEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC-----
Confidence 33444455556666778889987665443 455666778889999877777776665 778887776443
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+.++.|.||...|+.|
T Consensus 91 ----------------------------------------------------------------kylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 91 ----------------------------------------------------------------KYLRYFPGHKKRVNSL 106 (311)
T ss_pred ----------------------------------------------------------------ceEEEcCCCCceEEEE
Confidence 4567788999999999
Q ss_pred EecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEec----
Q 002407 574 SWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWN---- 646 (927)
Q Consensus 574 ~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~---- 646 (927)
+.+|- ..+++++.|++|++||++..+|...+... .-..++|.| .|-+++++.....|++||++.- .+...+
T Consensus 107 ~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~ 184 (311)
T KOG1446|consen 107 SVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITD 184 (311)
T ss_pred EecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCC
Confidence 99996 88999999999999999998888776532 234578999 9999999988889999999863 122211
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
......+.+.|+|||++++.++..+.+++.|.-+|..+..+.... ....--....|.|+++ ++++|+.||+|.
T Consensus 185 ~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~------~~~~~~~~a~ftPds~-Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP------NAGNLPLSATFTPDSK-FVLSGSDDGTIH 257 (311)
T ss_pred CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc------CCCCcceeEEECCCCc-EEEEecCCCcEE
Confidence 334689999999999999999999999999999999887765421 1111225678999987 899999999999
Q ss_pred EEECCcceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 727 VVDGIDLVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 727 VwD~~~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+|+............ +..++.++.|+|.-..++++ +..+.+|=.....
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 999765444443333 57788899999976666655 5678889766443
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.8e-19 Score=202.92 Aligned_cols=251 Identities=18% Similarity=0.282 Sum_probs=199.8
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|++.-+.|+|.|+|.+|++++.||.|++|+........+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-------------------------------------- 51 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-------------------------------------- 51 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch--------------------------------------
Confidence 479999999999999999999999999999997654211110
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~ 611 (927)
+.-+...|.+++... ++|++++.+++|.+|.+..++.-..+. .+-++.
T Consensus 52 ------------------------------i~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r 100 (933)
T KOG1274|consen 52 ------------------------------IDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR 100 (933)
T ss_pred ------------------------------hhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeeeccce
Confidence 001445566665432 589999999999999999988765554 788999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
+++|+. +|++++.|+.|-.|++.++.+... .....|..+|.++.|+|.+++||+.+-||.|+|||+.++.+...+...
T Consensus 101 ~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v 179 (933)
T KOG1274|consen 101 DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV 179 (933)
T ss_pred EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence 999998 999999999999999999987654 456778899999999999999999999999999999998877665421
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe--ecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG--FRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~--~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
.. .........++.++|+|++. .+++...|+.|.+|+.......+.. ..+...+..+.|+|+|+|||+++.||.|.
T Consensus 180 ~k-~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 180 DK-DNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred Cc-cccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 11 11112245677889999977 6888899999999996655544443 33344488999999999999999999999
Q ss_pred EEECCCC
Q 002407 769 VWKYEAE 775 (927)
Q Consensus 769 IWdl~s~ 775 (927)
|||.++-
T Consensus 258 vWnv~t~ 264 (933)
T KOG1274|consen 258 VWNVDTH 264 (933)
T ss_pred EEecccc
Confidence 9999973
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.1e-19 Score=185.87 Aligned_cols=278 Identities=18% Similarity=0.282 Sum_probs=206.6
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC------cCccc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV------ESERK 491 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~------~~~~~ 491 (927)
+..+.++.+.+.+-+-++|...++. |..++.||.+.|++|+|++.+.+++|++.|++.+||... .....
T Consensus 157 ~~tqpi~gtASADhTA~iWs~Esg~-----CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~ 231 (481)
T KOG0300|consen 157 DSTQPICGTASADHTARIWSLESGA-----CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAP 231 (481)
T ss_pred hcCCcceeecccccceeEEeecccc-----ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCC
Confidence 4445577778888899999877664 345568999999999999999999999999999999831 10000
Q ss_pred c------ee-----------------------ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccc
Q 002407 492 G------EL-----------------------LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (927)
Q Consensus 492 ~------~l-----------------------~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~ 542 (927)
. +. ......+|...|.++.|...+..++++..+...
T Consensus 232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA--------------- 296 (481)
T KOG0300|consen 232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA--------------- 296 (481)
T ss_pred CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc---------------
Confidence 0 00 000112333333444444444444333333221
Q ss_pred cCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCceEEEEEccC
Q 002407 543 LDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPV 618 (927)
Q Consensus 543 ~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~~~-h~~~V~~v~fsp~ 618 (927)
.+|+. .+.++..+.||....+.++-+|. .++++++.|.+.++||++.. +.+..|. |++.|+++.|.-
T Consensus 297 --------nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~- 367 (481)
T KOG0300|consen 297 --------NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT- 367 (481)
T ss_pred --------eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec-
Confidence 45554 56888999999999999999998 66889999999999999843 3455666 999999999985
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 619 DDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
+..+++|+.|.+|++||+++. ..+..+.....++.++++..++.|+.-..+..|++||++...+... +.....
T Consensus 368 -dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRl-----PrtsRq 441 (481)
T KOG0300|consen 368 -DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARL-----PRTSRQ 441 (481)
T ss_pred -CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccC-----Cccccc
Confidence 567999999999999999885 4566777888999999999999999999999999999987765432 122346
Q ss_pred CCCCCeEEEEEcCCCC-cEEEEEECCCcEEEEEC
Q 002407 698 SHQRKITGFQFAPGSS-SEVLVTSADSRIRVVDG 730 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~-~~Llsgs~Dg~I~VwD~ 730 (927)
+|...|+|++|..+-+ .-|++++.|..+.-|..
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 8999999999986532 24889999999999974
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=8.1e-19 Score=182.49 Aligned_cols=234 Identities=21% Similarity=0.264 Sum_probs=190.1
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCcCcc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGR--YLASAGEDCVIHVWQVVESER 490 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~--~LaSgs~DgtVrVWdv~~~~~ 490 (927)
.+++..-...++++|+.+-+|++|+.+.+. ..+.|-.|.+.|+++.|.++-. .|++|+.||.|.+|++...
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~-----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-- 117 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRK-----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-- 117 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchh-----hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe--
Confidence 355566667789999999999999976443 3356678999999999999765 8999999999999997543
Q ss_pred cceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCE
Q 002407 491 KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV 570 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V 570 (927)
..+..+++|.+.|
T Consensus 118 -------------------------------------------------------------------~~~~slK~H~~~V 130 (362)
T KOG0294|consen 118 -------------------------------------------------------------------ELLKSLKAHKGQV 130 (362)
T ss_pred -------------------------------------------------------------------EEeeeeccccccc
Confidence 2345678899999
Q ss_pred EEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 571 LDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 571 ~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
+.|+.+|.+. -++.+.|+.+++||+-.|+.-.........+.|.|+| .|.+|+.+..+ .|-+|.+.+..+......+
T Consensus 131 t~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~ 208 (362)
T KOG0294|consen 131 TDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNASVFREIENP 208 (362)
T ss_pred ceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHhHhhhhhcc
Confidence 9999999955 5688999999999999998877777666666799999 88888877764 5899999988877766666
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC-CCcEEEEEECCCcEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-SSSEVLVTSADSRIRVV 728 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-g~~~Llsgs~Dg~I~Vw 728 (927)
..+.++.|. ++..|++|..++.|.+||.........+ .+|..+|.++.+..+ ...+|++++.||.|+||
T Consensus 209 ~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~---------~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vW 278 (362)
T KOG0294|consen 209 KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF---------LAHENRVKDIASYTNPEHEYLVTASSDGFIKVW 278 (362)
T ss_pred ccceeeeec-CCceEEEecCCceEEEeccCCCccceee---------ecchhheeeeEEEecCCceEEEEeccCceEEEE
Confidence 777777775 4668999999999999999986666554 589999999984432 33589999999999999
Q ss_pred ECCc
Q 002407 729 DGID 732 (927)
Q Consensus 729 D~~~ 732 (927)
|...
T Consensus 279 d~~~ 282 (362)
T KOG0294|consen 279 DIDM 282 (362)
T ss_pred Eccc
Confidence 9543
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.9e-19 Score=191.24 Aligned_cols=278 Identities=13% Similarity=0.211 Sum_probs=202.2
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCc
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~ 641 (927)
.+.|+++.|+|. ..|++++.|++++||.+.... .++.+. ...+|.+..|.| +|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeeccccc
Confidence 468999999999 889999999999999987543 334333 678999999999 777 89999999999999999987
Q ss_pred EEEeccC----CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 642 VVDWNDL----HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 642 ~v~~~~~----~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
+..+... +..+....++|++++|++.+..|.|.+....++.++..+. ..+.|..++|+.++. .|+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K----------ieG~v~~~~fsSdsk-~l~ 360 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK----------IEGVVSDFTFSSDSK-ELL 360 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee----------eccEEeeEEEecCCc-EEE
Confidence 6653322 2367788899999999999999999999999998887753 457799999999886 888
Q ss_pred EEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecC
Q 002407 718 VTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHC 795 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~ 795 (927)
+++.+|.|.+||++.. +..+... ....-+++|.++++.|||+|+..|.|.|||.++.......+++....
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d------- 432 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD------- 432 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-------
Confidence 8999999999997654 3333332 22344678889999999999999999999987632211111110000
Q ss_pred CCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc---------cCc
Q 002407 796 QDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF---------FDR 866 (927)
Q Consensus 796 ~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~---------~d~ 866 (927)
+.+ ..++.++|+||+.+||.++..-- ...
T Consensus 433 -NLt-----------------------------------------t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T 470 (514)
T KOG2055|consen 433 -NLT-----------------------------------------TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT 470 (514)
T ss_pred -hhh-----------------------------------------eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence 000 11233456777777666552100 001
Q ss_pred cccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 867 ISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 867 ~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+..-||+... .+.+..|++|||.|-+++.|..+|++.+|+
T Consensus 471 VFsNfP~~n~-------------~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 471 VFSNFPTSNT-------------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeccCCCCCC-------------cccceEEEEecCCCceEEeecCCCceeeEe
Confidence 2334554321 112222689999999999999999999998
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=189.36 Aligned_cols=204 Identities=20% Similarity=0.296 Sum_probs=170.7
Q ss_pred CCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----
Q 002407 566 HLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---- 639 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t---- 639 (927)
-.++|.+++-+|.++++.++ ..+.|++|.+.+|..+.++. |-..|+|+.|+- |+.+|++|+.||.|.+|.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeeccc
Confidence 46789999999996655555 99999999999999998887 999999999998 999999999999999998732
Q ss_pred -----CcE-EEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 640 -----RQV-VDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 640 -----~~~-v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
-+. ..+..|.-.|+.+...+. ..+|++++.|.+|++||+..+.++..+ .....+++++..|.
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti----------~fp~si~av~lDpa 228 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI----------TFPSSIKAVALDPA 228 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE----------ecCCcceeEEEccc
Confidence 122 245666678999988765 468999999999999999999988875 34567999999997
Q ss_pred CCcEEEEEECCCcEEEEECC------------------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 712 SSSEVLVTSADSRIRVVDGI------------------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~------------------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.. .+.+|+.+|.|.+.+.. +....+.++.+...|++++++-||.+|++|+.||.|+|||+.
T Consensus 229 e~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 229 ER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cc-EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 65 89999999999998722 234456667666799999999999999999999999999998
Q ss_pred CCCCcccc
Q 002407 774 AESRPSRS 781 (927)
Q Consensus 774 s~~~~~~~ 781 (927)
+.+...+.
T Consensus 308 S~Q~iRtl 315 (476)
T KOG0646|consen 308 SKQCIRTL 315 (476)
T ss_pred hHHHHHHH
Confidence 86655443
No 127
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=2.4e-18 Score=203.75 Aligned_cols=246 Identities=22% Similarity=0.333 Sum_probs=195.5
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee--------------ecccccCccccEEEEccCCCCC
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL--------------LEKQEDGHLNMLLLANGSPEPT 516 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l--------------~~~~~~~~~~~v~~v~~spd~~ 516 (927)
+...|.+.|+|+.|+|||+|||+|++|+.|.||+.... ..... ......+|...|.-+.|+|++.
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS 142 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence 34679999999999999999999999999999998741 00000 0112356888899999999999
Q ss_pred eecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeC
Q 002407 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (927)
Q Consensus 517 ~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl 595 (927)
++++++.++.+..+.. .+.+.+..+.+|.+.|..+.|.|- .+|++-+.|++|+||++
T Consensus 143 ~lvS~s~DnsViiwn~----------------------~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt 200 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNA----------------------KTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT 200 (942)
T ss_pred EEEEecccceEEEEcc----------------------ccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEc
Confidence 9999999988743321 123678889999999999999998 78999999999999998
Q ss_pred CCCcEEEEEe-------cCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCCc-EEEeccCCCcEEEEEECCC---
Q 002407 596 SSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQ-VVDWNDLHEMVTAACYTPD--- 660 (927)
Q Consensus 596 ~t~~~~~~~~-------h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~spd--- 660 (927)
....+.+.+. ....+.-+.|+| ||++|++.-. -..+.|.+-.+-+ -..+.+|..++.++.|+|.
T Consensus 201 ~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe 279 (942)
T KOG0973|consen 201 SDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE 279 (942)
T ss_pred ccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence 8777776664 345688999999 9999998643 2347787766655 3457889999999999981
Q ss_pred --CC------------EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 661 --GQ------------GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 661 --g~------------~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.+ .+|+|+.|++|.||.....+.+.... .-....|..++|+|+|- .|++++.||+|.
T Consensus 280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~--------~lf~~SI~DmsWspdG~-~LfacS~DGtV~ 350 (942)
T KOG0973|consen 280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH--------NLFNKSIVDMSWSPDGF-SLFACSLDGTVA 350 (942)
T ss_pred cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh--------hhhcCceeeeeEcCCCC-eEEEEecCCeEE
Confidence 11 68899999999999987666554432 24567899999999987 799999999999
Q ss_pred EEE
Q 002407 727 VVD 729 (927)
Q Consensus 727 VwD 729 (927)
++.
T Consensus 351 ~i~ 353 (942)
T KOG0973|consen 351 LIH 353 (942)
T ss_pred EEE
Confidence 987
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=191.05 Aligned_cols=243 Identities=19% Similarity=0.269 Sum_probs=192.3
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~ 491 (927)
..+.+.+....+++.|...+.+.+|...++.+...+ .+|-..|+|+.|+-||.+|+|||.||.|.+|.+..--
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv-- 156 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV-- 156 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-----HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec--
Confidence 334444555567788889999999999999876554 7999999999999999999999999999999874311
Q ss_pred ceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEE
Q 002407 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (927)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (927)
....+ ...++++.|..|.-+|+
T Consensus 157 ----------------------------~a~~~------------------------------~~~~p~~~f~~HtlsIT 178 (476)
T KOG0646|consen 157 ----------------------------SADND------------------------------HSVKPLHIFSDHTLSIT 178 (476)
T ss_pred ----------------------------ccccC------------------------------CCccceeeeccCcceeE
Confidence 00000 03378889999999999
Q ss_pred EEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-------
Q 002407 572 DLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------- 641 (927)
Q Consensus 572 ~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~------- 641 (927)
++...+. .+|+|+|.|.++++||+..+..+..+.....+.+++..| .+..++.|+.+|.|.+.++..-.
T Consensus 179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 179 DLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred EEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCccccccc
Confidence 9998764 789999999999999999999999999999999999999 99999999999999988774321
Q ss_pred ----------EEEeccCCC--cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 642 ----------VVDWNDLHE--MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 642 ----------~v~~~~~~~--~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
......|.+ .|+|++++-||..|++|+.||.+.|||+...+++.+.. ...++|+.+++.
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~---------~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ---------TSKGPVTNLQIN 328 (476)
T ss_pred ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh---------hhccccceeEee
Confidence 122445555 89999999999999999999999999999988887753 256789999886
Q ss_pred CCCCcEEEEEECCCcEEEEE
Q 002407 710 PGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD 729 (927)
|--+..++.-.....+-.|+
T Consensus 329 ~~~~~~~l~~~~~ps~~~~~ 348 (476)
T KOG0646|consen 329 PLERGIILFEHKQPSLPNPH 348 (476)
T ss_pred ccccceecccccCccCCchH
Confidence 64332233333333344444
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=1.3e-17 Score=182.51 Aligned_cols=274 Identities=12% Similarity=0.094 Sum_probs=184.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
..+++++.|+.|++||+.+++++..+.+...+.+++|+| ++..+ ++++.++.|++||+.+++.+..+.....+..++|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 357889999999999999999988888656678899999 88766 5677889999999999888765555555678999
Q ss_pred CCCCCEEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-cEEEEECCcceE
Q 002407 658 TPDGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-RIRVVDGIDLVH 735 (927)
Q Consensus 658 spdg~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-~I~VwD~~~~~~ 735 (927)
+|+++.++++ ..++.|++||+.+.+.+..+. ....+.+++|+|++. +++++..++ .+.+||......
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----------~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIP----------VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEI 149 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEee----------CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeE
Confidence 9999987665 458999999999877655432 223467899999987 666666654 577789654333
Q ss_pred EEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 736 KFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
..... .......++|++++++|+.+ ..++.|++||+.+++..... .+... +.
T Consensus 150 ~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~----------~~~~~---------~~------- 202 (300)
T TIGR03866 150 VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI----------TFEIP---------GV------- 202 (300)
T ss_pred EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee----------eeccc---------cc-------
Confidence 22211 22345678999999988655 46899999999875422111 00000 00
Q ss_pred CCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceecccCCC
Q 002407 815 DTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNG 894 (927)
Q Consensus 815 d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~ 894 (927)
++. ......+.|+|++++++.+. ..+..+.+|+.+......... .. ...
T Consensus 203 ------------~~~----------~~~~~~i~~s~dg~~~~~~~---~~~~~i~v~d~~~~~~~~~~~--~~--~~~-- 251 (300)
T TIGR03866 203 ------------HPE----------AVQPVGIKLTKDGKTAFVAL---GPANRVAVVDAKTYEVLDYLL--VG--QRV-- 251 (300)
T ss_pred ------------ccc----------cCCccceEECCCCCEEEEEc---CCCCeEEEEECCCCcEEEEEE--eC--CCc--
Confidence 000 01111245899999866543 123467888865432211000 00 001
Q ss_pred CCcccCCCCCEEEEE-cCCCcEEEeecCC
Q 002407 895 ISSSISAWGMVIVTA-GLRGEIRAYQNFG 922 (927)
Q Consensus 895 ~~~a~S~dG~vLvTg-s~DG~IrvW~~~g 922 (927)
.+++|+|+|+.|+++ +.+|+|++|+.-+
T Consensus 252 ~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 252 WQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred ceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 157899999998876 5799999999543
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.6e-18 Score=186.25 Aligned_cols=287 Identities=16% Similarity=0.207 Sum_probs=213.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCC-eecccccCCceeeecccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~~~~~ 534 (927)
.+.|++|.|+|.-.+|++||.|++++||.+...... .+.. ..-...++.++.|.|+|. .+++++....+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS--~~l~~fPi~~a~f~p~G~~~i~~s~rrky~y------ 283 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQS--IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLY------ 283 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hhee--eeeccCccceeeecCCCceEEEecccceEEE------
Confidence 578999999999999999999999999998754322 1111 122346788899999988 666665554442
Q ss_pred cccccccccCcccccceEeecCCC---ceEEEccCC-CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCc
Q 002407 535 SINRKSLSLDHMVVPETVFALSDK---PICSFQGHL-DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY 609 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k---~i~~l~gH~-~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~ 609 (927)
.|++... .+..+.|+. ..+.....+++ ++|+..+..|.|.|....+++.+..+...+.
T Consensus 284 -----------------syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~ 346 (514)
T KOG2055|consen 284 -----------------SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV 346 (514)
T ss_pred -----------------EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE
Confidence 2333222 222233443 34566677887 8899999999999999999999999999999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc--EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM--VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~--V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
|..++|+. +++.|++++.+|.|.+||++...++..+...+. -+++|.++++.+||+|+..|.|.|||..+.......
T Consensus 347 v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 347 VSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred EeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 99999998 999999999999999999999988876655554 467888899999999999999999997653221111
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcce--EEEEe-ecCCcceEEEEEecCCCEEEEEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLV--HKFKG-FRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~--~~~~~-~~~~~~v~sv~fspdg~~Lasgs 762 (927)
.+.+........|+.++|+++.. +|+.++ .+..+++.....+. ..+.. ...-+.+++++|+|.+-+||.|.
T Consensus 426 ---kPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 426 ---KPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred ---CchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 11112234567899999999986 666665 46778887743321 11111 12345689999999999999999
Q ss_pred CCCcEEEEECC
Q 002407 763 EDSYVYVWKYE 773 (927)
Q Consensus 763 ~Dg~I~IWdl~ 773 (927)
.+|.|.+|.+.
T Consensus 502 e~grv~l~kL~ 512 (514)
T KOG2055|consen 502 EAGRVHLFKLH 512 (514)
T ss_pred CCCceeeEeec
Confidence 99999999874
No 131
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=4.1e-19 Score=191.97 Aligned_cols=207 Identities=20% Similarity=0.290 Sum_probs=165.1
Q ss_pred EccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC
Q 002407 563 FQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 563 l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t 639 (927)
-.+|++.|.+|+|... +.|++||.|++|++||+.++++..++. |...|.++.|+|....+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 4579999999999987 789999999999999999999999999 8999999999999999999999999999999985
Q ss_pred Cc-EEEeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCC-eeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 640 RQ-VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 640 ~~-~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.. .-......+.|-.++|.|.. ..+++++.||+|+-+|++.. +.+.+. +.|...|.++.+++..+.++
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---------~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---------KAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE---------EeccCCcceEEecCCCCcce
Confidence 22 22234456789999999955 56888889999999999986 444443 58999999999999988899
Q ss_pred EEEECCCcEEEEECCcceE-EEEeec-CCcceEEEEEecCCC-EEEEEECCCcEEEEECCCCCCc
Q 002407 717 LVTSADSRIRVVDGIDLVH-KFKGFR-NTNSQISASLTANGR-YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~~~~-~~~~~~-~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++++.|+.|++|+...-.. ....+. .-+...|+++.|+-. +|+.|+..+.++|||+.+....
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999999999999432111 111110 112245666667654 5677888888999999886543
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=9.9e-18 Score=173.92 Aligned_cols=249 Identities=20% Similarity=0.314 Sum_probs=185.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|.+-|.|+.|.+-|+.+|||+.|++|+|||........
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W---------------------------------------- 49 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW---------------------------------------- 49 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------------------------------
Confidence 5899999999999999999999999999999975432111
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C--cEEEEEeCCCcEEEEeCCCC-------c--E
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S--QHLLSSSMDKTVRLWHLSSK-------T--C 600 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d--~~L~Sgs~DgtV~lWDl~t~-------~--~ 600 (927)
......+.|.+.|..+.|.+ . +.+++++.|++|.||.-... + .
T Consensus 50 -------------------------~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 50 -------------------------SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred -------------------------EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 12234567999999999965 4 56899999999999975211 1 1
Q ss_pred EEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEE-E-----ec--------cCCCcEEEEEECC---CC
Q 002407 601 LKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVV-D-----WN--------DLHEMVTAACYTP---DG 661 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v-~-----~~--------~~~~~V~sla~sp---dg 661 (927)
..++. ....|+.|+|.|. -|-.|++++.||.||||+.....-+ . .+ .++....|+.|+| ..
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 22222 6788999999994 3667999999999999987653211 1 11 2345778999997 35
Q ss_pred CEEEEEECC-----CeEEEEECCCCe--eeeecccccccccccCCCCCeEEEEEcCCCC---cEEEEEECCCcEEEEECC
Q 002407 662 QGALVGSYK-----GSCHLYNTSENK--LQQKSPINLQNKKKRSHQRKITGFQFAPGSS---SEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 662 ~~l~tgs~D-----g~I~IwDl~~~~--~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~---~~Llsgs~Dg~I~VwD~~ 731 (927)
.+|++|+.+ +.++||....+. ...... ...|..+|+.++|.|.-. .+|++++.|| |+||...
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~-------L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAE-------LPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehh-------cCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 689998876 578888776543 222222 248999999999999632 3788899999 9999843
Q ss_pred c-------------------ceEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 732 D-------------------LVHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 732 ~-------------------~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
. .+.++. ...|...+..+.|+-.|..|++.+.||.|++|...-
T Consensus 257 ~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 257 VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 1 122222 234567899999999999999999999999998643
No 133
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=7.4e-18 Score=174.51 Aligned_cols=267 Identities=19% Similarity=0.213 Sum_probs=205.5
Q ss_pred CccccEEEEccCC-CCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~sp-d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.....|..++|+| ...++++++.++.+..+...... .. .+ .....|.++|.+++|+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------~~----------~~-ka~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------QL----------VP-KAQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC---------cc----------cc-hhhhccCCCeEEEEEccCC
Confidence 3456788999999 46677788888888555432210 00 01 233568999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCC--EEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR--YFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~--~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla 656 (927)
..+++|+.|+.+++||+.+++..++-.|..+|.++.|-+ ... .|++|+.|.+|+.||.+....+.....++.+.++.
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAAD 163 (347)
T ss_pred ceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehh
Confidence 789999999999999999998888888999999999987 555 79999999999999999999999999999988876
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC----c
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI----D 732 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~ 732 (927)
.- ..+++++..+..|.+|+++++....... .......+.|++..++.. ..+.|+-+|.+.|.... .
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~-------~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRI-------ESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhh-------cCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCcc
Confidence 54 4589999999999999998765443321 123445688999998877 46999999999987643 2
Q ss_pred ceEEEEeecC-------CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCe
Q 002407 733 LVHKFKGFRN-------TNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDV 798 (927)
Q Consensus 733 ~~~~~~~~~~-------~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v 798 (927)
..-.|+.|.. --.|.+++|+|.-..|+|++.||++.+||-+...++.....+.....+-.|+.++.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 3445666653 22466899999999999999999999999887766665555555555555555443
No 134
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.2e-17 Score=160.92 Aligned_cols=264 Identities=14% Similarity=0.143 Sum_probs=194.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.....|.+++|+|.|.+.|.|+...+.+|-....-..+.. .|....
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~-------~hea~~--------------------------- 75 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH-------AHEAAK--------------------------- 75 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCccc-------cccccc---------------------------
Confidence 3566899999999999999999999999876533211110 000000
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE-----EEEe-c
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-----KIFS-H 606 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~-----~~~~-h 606 (927)
..|. .....-+.|.+.|.|.+|+|+ .+|++|+.|++|++.-+....+. ..|. |
T Consensus 76 -------------~pp~-------v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh 135 (350)
T KOG0641|consen 76 -------------QPPS-------VLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH 135 (350)
T ss_pred -------------CCCe-------EEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec
Confidence 0000 011223468999999999999 77899999999999876644332 2233 9
Q ss_pred CCceEEEEEccC---CCCEEEEEE-CCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 607 SDYVTCIQFNPV---DDRYFISGS-LDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 607 ~~~V~~v~fsp~---dg~~L~sgs-~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
.+.|..++|... .+.+|++++ .|..|++-|...++... ...|.+.|.++ ++-+|-++++|+.|.+|++||++-.
T Consensus 136 dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 136 DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeecc
Confidence 999999999641 245666654 36677777888888766 44555666655 4556889999999999999999988
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.++......... .--....|.+++..|.|. +|++|-.|....+||.+........+.+...|.++.|+|...||+++
T Consensus 215 ~~v~~l~~~~~~--~glessavaav~vdpsgr-ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 215 SCVNTLDNDFHD--GGLESSAVAAVAVDPSGR-LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ceeeeccCcccC--CCcccceeEEEEECCCcc-eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 877765432211 011236799999999987 89999999999999977666666667788899999999999999999
Q ss_pred ECCCcEEEEECCCC
Q 002407 762 SEDSYVYVWKYEAE 775 (927)
Q Consensus 762 s~Dg~I~IWdl~s~ 775 (927)
+.|..|++=|+...
T Consensus 292 syd~~ikltdlqgd 305 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGD 305 (350)
T ss_pred cccceEEEeecccc
Confidence 99999999999764
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.5e-20 Score=207.98 Aligned_cols=236 Identities=24% Similarity=0.431 Sum_probs=203.4
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+++.+|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp----------------------------------------- 60 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP----------------------------------------- 60 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCC-----------------------------------------
Confidence 445689999999999778899999999999999976432
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
..+..|.+|..+|.+|.|++. .+|++|+.+|+|++||++..+.++++. |.
T Consensus 61 ----------------------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~ 112 (825)
T KOG0267|consen 61 ----------------------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL 112 (825)
T ss_pred ----------------------------chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc
Confidence 122247789999999999998 778899999999999999999888776 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..+..++|+| -+.|+++|+.|..+++||++..-+... ..|...+..+.|+|+|++++.|+.|..++|||+..+++...
T Consensus 113 ~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 113 LNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence 9999999999 899999999999999999996655554 44567788999999999999999999999999999998887
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
+ ..|...+..+.|+|.. .++..|+.|++|++||+.+....-.+......|.+..|+|+++.+++|....
T Consensus 192 f---------~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 192 F---------KSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred c---------ccccccccccccCchh-hhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 6 4799999999999965 4788899999999999887766666666678899999999999999886554
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.1e-18 Score=175.75 Aligned_cols=276 Identities=15% Similarity=0.205 Sum_probs=187.4
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-----EEEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-----CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-----~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
+..|++|.+.|++++|+.+ .+|+|++.|++|+||+++... +++.--.-+..+.+.|.|....+++++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4467899999999999999 789999999999999998532 2222223346788999994455566666667799
Q ss_pred EEeCCCCc---E----EEec------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC
Q 002407 634 IWSIPERQ---V----VDWN------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 634 IWDl~t~~---~----v~~~------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
+|.+...+ . +.+- .|.-.+..+-.-..+++|++++.|..|.||++. |+.+..+. ...
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id---------tnq 228 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID---------TNQ 228 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec---------ccc
Confidence 99874321 1 1111 122356667777788999999999999999999 66665542 344
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEE--------CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVD--------GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--------~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..-+..+.+|+|. +|++++.--.|+||. ..+....+....|...|..++|+++...+++.+.||.++|||+
T Consensus 229 ~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 229 SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 4566778999997 889999999999998 2344556666677888999999999999999999999999998
Q ss_pred CCCCC----cccccccc-------eeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCccc
Q 002407 773 EAESR----PSRSKSIT-------VTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCR 841 (927)
Q Consensus 773 ~s~~~----~~~~~~~~-------~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~ 841 (927)
+-..+ |..++... ....-....+++..+|++......++...+ +...+..+-.+. -
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~----------g~~~~~~e~~h~---~ 374 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED----------GKDYPELEDIHS---T 374 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc----------CccchhHHHhhc---C
Confidence 75322 22221110 001112233444444554444433333333 332322221111 3
Q ss_pred CcceeeecCCCCeEEEec
Q 002407 842 SATGYTNSPLNGTISSAT 859 (927)
Q Consensus 842 ~~~~~~fSPdg~~Lasas 859 (927)
.++.++|+|+|+++++.+
T Consensus 375 ~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 375 TISSISYSSDGKYIATCG 392 (420)
T ss_pred ceeeEEecCCCcEEeeec
Confidence 345567999999999976
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=4e-18 Score=175.41 Aligned_cols=251 Identities=20% Similarity=0.250 Sum_probs=194.0
Q ss_pred ccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc----------EEEEE------ecCCceEEEEEccCCCCEEEE
Q 002407 564 QGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT----------CLKIF------SHSDYVTCIQFNPVDDRYFIS 625 (927)
Q Consensus 564 ~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~----------~~~~~------~h~~~V~~v~fsp~dg~~L~s 625 (927)
..|.+.|+.|...+. .++++|+.||.|.+||++.-. .+..+ .|.-.|..+.|-|.|..+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 458899999999886 679999999999999997532 11111 277789999999999999999
Q ss_pred EECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC---CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 626 GSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
++.|.++++||..+.+....+..++.|.+-+++|- ..++++|..+-.|++.|+..|...+.+ .+|...
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L---------sGHr~~ 190 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL---------SGHRDG 190 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee---------ccccCc
Confidence 99999999999999999999999999999999983 457888888999999999999988876 499999
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcc---eEEEE------------eecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---VHKFK------------GFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---~~~~~------------~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
|.++.|+|....+|++|+.||.|++||.+.. ...+. ...+.+.+..++|+.++.++++++.|..+
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccce
Confidence 9999999999989999999999999995432 22222 22356678899999999999999999999
Q ss_pred EEEECCCCCCcccccc---cceee---eeeeecCCCeEEEEecCCceeEEee-cCCceeeccc
Q 002407 768 YVWKYEAESRPSRSKS---ITVTH---SYEHFHCQDVSVAIPWPGVGDTWGL-QDTYLDEFST 823 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~---~~~~~---~~~~~~~~~v~vavs~~g~~~i~~~-~d~~i~~~~~ 823 (927)
++|+..++....+.-+ ..... ....--+.++.+.++.++...+.+. .+..+..|+.
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred EEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 9999998764322211 10000 0111224466667777766666553 3444555553
No 138
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.8e-18 Score=192.13 Aligned_cols=285 Identities=15% Similarity=0.195 Sum_probs=203.9
Q ss_pred ecCCCCeEEEccCceEEEEeccCccccc-ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~-~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~ 495 (927)
......+++.+.++|.|.+|+.....+. .-...+...+|.+.|..+.|-|....|++++.|.++++||+.+......
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~-- 137 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG-- 137 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--
Confidence 3444567899999999999998877665 1222355679999999999999667999999999999999987653221
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
..+.||...|.+++|
T Consensus 138 -----------------------------------------------------------------~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 138 -----------------------------------------------------------------RLNLGHTGSVKSECF 152 (720)
T ss_pred -----------------------------------------------------------------eeecccccccchhhh
Confidence 135689999999999
Q ss_pred cCC--cEEEEEeCCCcEEEEeCCCCc--------------------EEEEE--------ecCC----ceEEEEEccCCCC
Q 002407 576 SKS--QHLLSSSMDKTVRLWHLSSKT--------------------CLKIF--------SHSD----YVTCIQFNPVDDR 621 (927)
Q Consensus 576 spd--~~L~Sgs~DgtV~lWDl~t~~--------------------~~~~~--------~h~~----~V~~v~fsp~dg~ 621 (927)
.+. ..|++|+.||.|.|||++... ..+.. .+.. .|+.+.| . |..
T Consensus 153 ~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~ 230 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DES 230 (720)
T ss_pred ccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccc
Confidence 997 679999999999999987432 00000 0222 3455555 4 888
Q ss_pred EEEEEEC-CCcEEEEeCCCCcEEE---------eccC---CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 622 YFISGSL-DAKVRIWSIPERQVVD---------WNDL---HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 622 ~L~sgs~-Dg~I~IWDl~t~~~v~---------~~~~---~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
.|++++. |+.|+|||++...... +..+ ...+.+++....|.+|++.+.|+.|++|++..........
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~ 310 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE 310 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence 9999888 9999999998754321 1112 2367888888899999999999999999998755433322
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-EeecCCcceEEEEEecCC-CEEEEEECCCc
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTANG-RYVVSASEDSY 766 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~ 766 (927)
+... ......| .-..+|++. .|++|+.|...++|.+....... ....|...|++++|.|.. .-++++++|..
T Consensus 311 ~sg~----~~~sf~v-ks~lSpd~~-~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 311 FSGK----LNSSFYV-KSELSPDDC-SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred ccCc----ccceeee-eeecCCCCc-eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 1100 0111112 224678877 89999999999999965443222 222356778899998743 34777799999
Q ss_pred EEEEECCCCC
Q 002407 767 VYVWKYEAES 776 (927)
Q Consensus 767 I~IWdl~s~~ 776 (927)
++||++.++-
T Consensus 385 ~kiW~l~~~l 394 (720)
T KOG0321|consen 385 VKIWRLSNGL 394 (720)
T ss_pred eEEEeccCch
Confidence 9999997653
No 139
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.4e-18 Score=173.39 Aligned_cols=231 Identities=17% Similarity=0.278 Sum_probs=177.2
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+++.+.++.|++|....... .....+|.||.++|+.++|.. -|.+||+++.||.|.||.-.++.-
T Consensus 25 rlATcsSD~tVkIf~v~~n~~--s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w---------- 92 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQ--SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW---------- 92 (299)
T ss_pred eeeeecCCccEEEEEEcCCCC--ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch----------
Confidence 345555666788887765543 345578999999999999976 899999999999999998765521
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-- 578 (927)
.....+..|...|++++|.|.
T Consensus 93 ---------------------------------------------------------~k~~e~~~h~~SVNsV~waphey 115 (299)
T KOG1332|consen 93 ---------------------------------------------------------TKAYEHAAHSASVNSVAWAPHEY 115 (299)
T ss_pred ---------------------------------------------------------hhhhhhhhhcccceeeccccccc
Confidence 112234569999999999997
Q ss_pred c-EEEEEeCCCcEEEEeCCCC-c-EE-EE-EecCCceEEEEEccCC--C-----------CEEEEEECCCcEEEEeCCCC
Q 002407 579 Q-HLLSSSMDKTVRLWHLSSK-T-CL-KI-FSHSDYVTCIQFNPVD--D-----------RYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 579 ~-~L~Sgs~DgtV~lWDl~t~-~-~~-~~-~~h~~~V~~v~fsp~d--g-----------~~L~sgs~Dg~I~IWDl~t~ 640 (927)
+ .|++++.||.|.|.+++.. . .. ++ +.|.-.|+++.|.|.. + +.|++|+.|..|+||+...+
T Consensus 116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 3 4889999999999998764 2 22 22 2399999999999831 2 56999999999999999886
Q ss_pred cEE---EeccCCCcEEEEEECCCC----CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 641 QVV---DWNDLHEMVTAACYTPDG----QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 641 ~~v---~~~~~~~~V~sla~spdg----~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
+-+ .+..|.+.|..++|.|.- .+|++++.||+|.||-........+..+ .......+..+.|+..|.
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl------l~~f~~~~w~vSWS~sGn 269 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL------LEEFPDVVWRVSWSLSGN 269 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc------cccCCcceEEEEEecccc
Confidence 432 256778899999999954 5799999999999998763222111111 124556799999999887
Q ss_pred cEEEEEECCCcEEEEE
Q 002407 714 SEVLVTSADSRIRVVD 729 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD 729 (927)
+|++++.|+.|.+|.
T Consensus 270 -~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 270 -ILAVSGGDNKVTLWK 284 (299)
T ss_pred -EEEEecCCcEEEEEE
Confidence 899999999999997
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=8e-18 Score=173.23 Aligned_cols=290 Identities=17% Similarity=0.264 Sum_probs=205.4
Q ss_pred ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcc--c--------ceeecccccCccccEEEEccCCC-CCeecc
Q 002407 453 QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESER--K--------GELLEKQEDGHLNMLLLANGSPE-PTSLSP 520 (927)
Q Consensus 453 ~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~--~--------~~l~~~~~~~~~~~v~~v~~spd-~~~la~ 520 (927)
..|.+.|+++.+.+ .|+|+++|+.||.|.|||+++... . ..+......+|...|..+.|.|- .-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999988 799999999999999999986541 1 11112334567777888888874 334444
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCC
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLS 596 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~ 596 (927)
+..+..+ ++|+.+.-....--...+.|..-+|+|- -++++|..|-.|++-|+.
T Consensus 120 sSFDhtl-----------------------KVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 120 SSFDHTL-----------------------KVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccccceE-----------------------EEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 5555555 4454443332222235677888888884 457788888999999999
Q ss_pred CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEE-------------E-eccCCCcEEEEEECC
Q 002407 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVV-------------D-WNDLHEMVTAACYTP 659 (927)
Q Consensus 597 t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v-------------~-~~~~~~~V~sla~sp 659 (927)
+|.+-+++. |.+.|.++.|+|...-.|++|+.||.|++||++.- ... + ...|.+.++.++|+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 999999997 99999999999966667899999999999999753 111 1 233456899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKF 737 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~ 737 (927)
++.++++.+.|..+++|+...|........+....+ +.+ ..+. +. +-+.. .++.--.++.+.++.... .+..+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~-~~~-~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ-TTS-FAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEGSFVRRL 331 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccc-ccc-ceEE-Ee-ecccc-eEEEEecCCeEEEEEccCceEEEee
Confidence 999999999999999999998875443221111100 011 1111 22 11222 344444557788887543 44444
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..+ ...+.+..+.|+-+.+.++..|++|+.|-.
T Consensus 332 ~~h--~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STH--LKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecc--cceeeEEeecCchhhhhccccCCccccccc
Confidence 444 667888999999999999999999999987
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=4.9e-18 Score=190.17 Aligned_cols=255 Identities=16% Similarity=0.260 Sum_probs=182.3
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE---EecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI---FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~---~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+..+..|...|.++.|.|. ..|++++.|.++++||+.+.+++.. ++|...|.+++|.|.+...|++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 3455679999999999997 6799999999999999999988765 45999999999999889999999999999999
Q ss_pred eCCCCcE----------------------------EEeccCCCcEEE---EEECCCCCEEEEEEC-CCeEEEEECCCCee
Q 002407 636 SIPERQV----------------------------VDWNDLHEMVTA---ACYTPDGQGALVGSY-KGSCHLYNTSENKL 683 (927)
Q Consensus 636 Dl~t~~~----------------------------v~~~~~~~~V~s---la~spdg~~l~tgs~-Dg~I~IwDl~~~~~ 683 (927)
|++-... ..+..+...|.. +.+..|...||+++. |+.|+|||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 9864321 011122223444 555567888888887 99999999998765
Q ss_pred eeecccccccccccCC---CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceEEEEEecCCC
Q 002407 684 QQKSPINLQNKKKRSH---QRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h---~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
....+- ........+ ...++++.....|. +|++.+.|+.|+.|++.. ....+.++.....-..-..+|++.
T Consensus 253 ~~r~ep-~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 253 AYRQEP-RGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred ccccCC-CcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 544321 111112223 34577888888777 566666699999999643 333444444443344457789999
Q ss_pred EEEEEECCCcEEEEECCCCCCccc-ccccceeeeeeeecCCCe--EEEEecCCceeEEeecCC
Q 002407 757 YVVSASEDSYVYVWKYEAESRPSR-SKSITVTHSYEHFHCQDV--SVAIPWPGVGDTWGLQDT 816 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~~~-~~~~~~~~~~~~~~~~~v--~vavs~~g~~~i~~~~d~ 816 (927)
+|++|+.|...+||.+.+.+.+.. +.++.....+..+.+..+ .++.+-+-...+|.+.++
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999999999999999776543 345555566666554332 233355666788877544
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=3.9e-18 Score=185.62 Aligned_cols=282 Identities=16% Similarity=0.213 Sum_probs=225.5
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
|+...+++.......+|+|.. +-|++|+.....-..-...-...--...|.++.+.|||+.|++||+-.+|.|||+...
T Consensus 419 GEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred CcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 344445555555667787754 5689999865422211111112235678999999999999999999999999999865
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGHL 567 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~ 567 (927)
...... ...........++.+||.++..++..++.| .+|++.. ..++.|+||.
T Consensus 498 Tprika---eltssapaCyALa~spDakvcFsccsdGnI-----------------------~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 498 TPRIKA---ELTSSAPACYALAISPDAKVCFSCCSDGNI-----------------------AVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred Ccchhh---hcCCcchhhhhhhcCCccceeeeeccCCcE-----------------------EEEEcccceeeecccCCC
Confidence 432211 112222445678899999988888888877 5666654 4678899999
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
+.+.||..+++ ..|.||+-|.+||.||++++..+........|.++.++| ++.+|+.|-..+.+-|......+..+..
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp~kyqlh 630 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLH 630 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCccceeec
Confidence 99999999999 569999999999999999999888878889999999999 9999999999999999998888888888
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.|+..|.++.|.+.|+++++.+.|+.+..|.+.-+..+... .....|.++.++.+++ +|++|+.|....
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----------kE~SsVlsCDIS~ddk-yIVTGSGdkkAT 699 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISFDDK-YIVTGSGDKKAT 699 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----------cccCcceeeeeccCce-EEEecCCCcceE
Confidence 88899999999999999999999999999999888776552 4567899999998876 899999998888
Q ss_pred EEE
Q 002407 727 VVD 729 (927)
Q Consensus 727 VwD 729 (927)
||.
T Consensus 700 VYe 702 (705)
T KOG0639|consen 700 VYE 702 (705)
T ss_pred EEE
Confidence 875
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=1.5e-17 Score=180.39 Aligned_cols=286 Identities=15% Similarity=0.196 Sum_probs=209.1
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDG--RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG--~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
.+...+.++-|.+.|++++|+|.. +++|+|..-|.|-+||+.+.+...
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~------------------------------ 224 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK------------------------------ 224 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc------------------------------
Confidence 344556678899999999999954 588999999999999996322111
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcE
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
.-+..+..|..+|.+|.|+|. .++++.|+||+|++-|++....
T Consensus 225 -----------------------------------d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~ 269 (498)
T KOG4328|consen 225 -----------------------------------DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS 269 (498)
T ss_pred -----------------------------------CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh
Confidence 123456789999999999996 7899999999999999998754
Q ss_pred EEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCC-CEEEEEECCCeEE
Q 002407 601 LKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDG-QGALVGSYKGSCH 674 (927)
Q Consensus 601 ~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~ 674 (927)
-..+. ....+..++|+. +...++.+..=|.+.+||+++... ..+.-|...|+.++++|-. .+|++++.|++.+
T Consensus 270 e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~k 348 (498)
T KOG4328|consen 270 EEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAK 348 (498)
T ss_pred HHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCccee
Confidence 44443 344577888888 666677777777999999988654 3355566799999999954 5789999999999
Q ss_pred EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC----cceE-EEEeecC----Ccc
Q 002407 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI----DLVH-KFKGFRN----TNS 745 (927)
Q Consensus 675 IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~-~~~~~~~----~~~ 745 (927)
|||++.-...... ......|...|.+..|+|.+.. |++++.|..|+|||.. .... ....|.+ ...
T Consensus 349 IWD~R~l~~K~sp-----~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT 422 (498)
T KOG4328|consen 349 IWDLRQLRGKASP-----FLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLT 422 (498)
T ss_pred eeehhhhcCCCCc-----ceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCccccccc
Confidence 9999864433320 1112478999999999999885 9999999999999963 1111 1111211 122
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccc--ccceeeeeeeecCCCeEEEE
Q 002407 746 QISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSK--SITVTHSYEHFHCQDVSVAI 802 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~--~~~~~~~~~~~~~~~v~vav 802 (927)
...+.|.|+..+|++|-.-..|-|+|-+.++...... ..........+|+-+..++.
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 3467999999999999999999999998876433321 22233455667776664443
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1e-17 Score=191.16 Aligned_cols=200 Identities=18% Similarity=0.325 Sum_probs=160.5
Q ss_pred EEEEEecCC--cEEEEEeCCCcEEEEeCCC---CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 570 VLDLSWSKS--QHLLSSSMDKTVRLWHLSS---KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 570 V~~l~~spd--~~L~Sgs~DgtV~lWDl~t---~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
+.++.|..- ++|+|++..|.|.+||+.. .+.+..|. |+..|+++.|++...++|++|+.||.|++||++..+-.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 456778742 8899999999999999987 45555665 99999999999989999999999999999999987766
Q ss_pred Ee-ccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 644 DW-NDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 644 ~~-~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.. ....+.|..|.|+| .+.+|+++...|.+.+||++....... ++.+|.++|.|+.|+|+. .+|++|+.
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~--------k~~AH~GpV~c~nwhPnr-~~lATGGR 240 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK--------KLTAHNGPVLCLNWHPNR-EWLATGGR 240 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH--------HhhcccCceEEEeecCCC-ceeeecCC
Confidence 54 34457899999999 577899999999999999987553322 236999999999999955 49999999
Q ss_pred CCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCE-EEEEE--CCCcEEEEECCCCCCc
Q 002407 722 DSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRY-VVSAS--EDSYVYVWKYEAESRP 778 (927)
Q Consensus 722 Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~-Lasgs--~Dg~I~IWdl~s~~~~ 778 (927)
|++|+|||... ............++..+.|-|...+ |++++ .|-.|+|||++....|
T Consensus 241 DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred CccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 99999999652 2222222334577889999998765 66655 4788999999876554
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.2e-19 Score=199.05 Aligned_cols=214 Identities=20% Similarity=0.386 Sum_probs=184.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++.+|..+.++-+|... +......|.+|..+|.||.|+++..+|++|+.+|+|++||+++.+
T Consensus 41 r~~~~Gg~~~k~~L~~i~-----kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk------------ 103 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIG-----KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK------------ 103 (825)
T ss_pred eeeccCCCceeecccccc-----CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh------------
Confidence 456788888889888743 223334588999999999999999999999999999999997543
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.+++|.||...+..+.|+|- .+
T Consensus 104 ---------------------------------------------------------~vrtLtgh~~~~~sv~f~P~~~~ 126 (825)
T KOG0267|consen 104 ---------------------------------------------------------IVRTLTGHLLNITSVDFHPYGEF 126 (825)
T ss_pred ---------------------------------------------------------hhhhhhccccCcceeeeccceEE
Confidence 34466789999999999998 67
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEEC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYT 658 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~s 658 (927)
.+.|+.|..+++||++..-|.+.+. |...|.++.|+| +|++++.++.|..++|||+..|++...+. |...+..+.|+
T Consensus 127 ~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~h 205 (825)
T KOG0267|consen 127 FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFH 205 (825)
T ss_pred eccccccccceehhhhccCceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccC
Confidence 8899999999999999999999998 999999999999 99999999999999999999999987665 77899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
|..-.++.|+.|+++++||+++...+... ......|.+.+|.|++. .+++|.
T Consensus 206 p~e~Lla~Gs~d~tv~f~dletfe~I~s~---------~~~~~~v~~~~fn~~~~-~~~~G~ 257 (825)
T KOG0267|consen 206 PLEVLLAPGSSDRTVRFWDLETFEVISSG---------KPETDGVRSLAFNPDGK-IVLSGE 257 (825)
T ss_pred chhhhhccCCCCceeeeeccceeEEeecc---------CCccCCceeeeecCCce-eeecCc
Confidence 99999999999999999999988777654 24578899999999985 444443
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=176.11 Aligned_cols=237 Identities=19% Similarity=0.276 Sum_probs=174.8
Q ss_pred CCeEEEccCceEEEEeccCcc-----------cccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcC
Q 002407 421 QDVSFHGQERVRVRQYGKSCK-----------DLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~-----------~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~ 488 (927)
..+.++-+..|+|.+|+.... .......+.++.+|.+.=+.|+|||- ...|+||.--+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 344566678889999986321 11223344567899999999999992 225888888889999988764
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
.-.. . ...|.+|+.
T Consensus 245 ~W~v---------------------------------------------------------------d---~~Pf~gH~~ 258 (440)
T KOG0302|consen 245 SWKV---------------------------------------------------------------D---QRPFTGHTK 258 (440)
T ss_pred ceee---------------------------------------------------------------c---Ccccccccc
Confidence 3111 0 113557999
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCC---cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK---TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--- 640 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~---~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--- 640 (927)
.|-+|+|+|. +.|++||.|++|+|||++.+ .++.+-.|...|+.|.|+. ...+|++|+.||+++|||+++-
T Consensus 259 SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred chhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCC
Confidence 9999999997 88999999999999999988 5555555999999999998 6669999999999999999874
Q ss_pred cEE-EeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeee-------ecccccccccccCC--CCCeEEEEEc
Q 002407 641 QVV-DWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQ-------KSPINLQNKKKRSH--QRKITGFQFA 709 (927)
Q Consensus 641 ~~v-~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~-------~~~i~~~~~~~~~h--~~~Vtsl~fs 709 (927)
+.+ .+..|..+|+++.|+|. ...|++++.|..|.|||+....-.. .....++..-...| .+.|..+.|+
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH 417 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWH 417 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheec
Confidence 334 45667789999999994 4678888999999999986432200 00001111111223 4568889999
Q ss_pred CCCCcEEEEEECCCc
Q 002407 710 PGSSSEVLVTSADSR 724 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~ 724 (927)
++-+.+|++++.||-
T Consensus 418 ~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 418 RQIPGLLVSTAIDGF 432 (440)
T ss_pred cCCCCeEEEecccce
Confidence 998888999888874
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.7e-16 Score=182.82 Aligned_cols=266 Identities=16% Similarity=0.200 Sum_probs=206.7
Q ss_pred eecCCCCeEEEccCceEEEEeccCcc-cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 416 ATDDSQDVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 416 a~~d~~~~~~~g~~~~~V~i~~~~s~-~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
+.+....++.+...++.|++|+..+. +.... +.-|...|.+++. ++.+|++|+.+++|.+|.+.+++.-..
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t-----i~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~i- 91 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPET-----IDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTI- 91 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCch-----hhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccce-
Confidence 33444458888888999999987765 33322 2237888888876 455999999999999999876642111
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
+...+-++.+++
T Consensus 92 --------------------------------------------------------------------L~Rftlp~r~~~ 103 (933)
T KOG1274|consen 92 --------------------------------------------------------------------LARFTLPIRDLA 103 (933)
T ss_pred --------------------------------------------------------------------eeeeeccceEEE
Confidence 112345788999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC----
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---- 648 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---- 648 (927)
|+.+ .+++.|+.|-.|++-++......+.+. |..+|.+|.|+| .+++|++.+.||.|++||+.++.+......
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD 182 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCcc
Confidence 9988 678999999999999999887777766 999999999999 999999999999999999999876543221
Q ss_pred -----CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 649 -----HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 649 -----~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
...+..++|+|+|..+++...|+.|++|+..+......+.. ..+...+..++|+|.|. +|++++.+|
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-------~~~ss~~~~~~wsPnG~-YiAAs~~~g 254 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-------KLSSSKFSDLQWSPNGK-YIAASTLDG 254 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-------cccccceEEEEEcCCCc-EEeeeccCC
Confidence 24678899999998999999999999999998887766542 23444599999999987 899999999
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
.|.|||..+. ..|.....|.+++|.|+..-|-.-...|...+|
T Consensus 255 ~I~vWnv~t~----~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 255 QILVWNVDTH----ERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cEEEEecccc----hhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999997762 225566778999999998876555555554444
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=5.7e-17 Score=175.92 Aligned_cols=207 Identities=16% Similarity=0.246 Sum_probs=169.7
Q ss_pred ceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 559 PICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~----~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
.....+-|...|++++|+|. ..+++|..-|+|-+||+.+.+ -+..+. |..+|.+|.|+|.+...+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 34456678899999999997 568899999999999996332 233343 9999999999999999999999999
Q ss_pred cEEEEeCCCCcEEEecc---CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~---~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
+|++-|+.......... ....+..+.|+.+...++.+..=|...+||++++...... ..-|...|++++
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~--------~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYEN--------LRLHKKKITSVA 329 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchh--------hhhhhcccceee
Confidence 99999998865433322 3457788889988888999988889999999987654332 146777999999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcceE----EEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLVH----KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~~----~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
++|..+.+|++++.|++.+|||.+.+.. .+....|...|.++.|||.+-.|+|.+.|..|+|||..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999999999999999999765433 34455678889999999998889999999999999985
No 149
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=5.9e-17 Score=172.78 Aligned_cols=252 Identities=21% Similarity=0.314 Sum_probs=188.9
Q ss_pred EeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 451 EIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 451 ~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.+.||+++|..++|+| +...|||||+|.+|.||++..+.....+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l----------------------------------- 120 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL----------------------------------- 120 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc-----------------------------------
Confidence 3479999999999999 5668999999999999998765433221
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEecC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~ 607 (927)
.+++..|.||...|--++|+|. +.|++++.|.+|.+||+.+++.+.++.|.
T Consensus 121 ---------------------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hp 173 (472)
T KOG0303|consen 121 ---------------------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHP 173 (472)
T ss_pred ---------------------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCC
Confidence 2677889999999999999997 88999999999999999999999999999
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCC-CcEEEEEECCCCCEEEEEE---CCCeEEEEECCCCe
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLH-EMVTAACYTPDGQGALVGS---YKGSCHLYNTSENK 682 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~-~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~~ 682 (927)
+.|+++.|+- +|.+|++.+.|.+|+|||.++++++... .|. .....+.|-.+|..+-+|. .+..+-+||..+-.
T Consensus 174 d~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 174 DMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred CeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence 9999999999 9999999999999999999999998755 333 2445666788888665553 35779999876543
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
....++ .......|.---|.++..-+.++|-.|+.||.|.... .++-+..+....+...+.|-|.-- +
T Consensus 253 eP~~~~-------elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG--l 323 (472)
T KOG0303|consen 253 EPIALQ-------ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG--L 323 (472)
T ss_pred CcceeE-------EeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccccc--c
Confidence 221111 0133445555567888776677778999999998533 355555555666677777766432 2
Q ss_pred EEECCCcEEEEECCC
Q 002407 760 SASEDSYVYVWKYEA 774 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s 774 (927)
-.+..-..++|.+.+
T Consensus 324 ~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 324 DVSKCEIARFYKLHE 338 (472)
T ss_pred cchHHHHHHHHHhhc
Confidence 222333344555443
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=6e-14 Score=157.04 Aligned_cols=367 Identities=23% Similarity=0.338 Sum_probs=241.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc-ccceeecccccCccccEEEEcc-CCCCC-eeccccc-CCc
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANG-SPEPT-SLSPKHL-DNH 526 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~-~~~~l~~~~~~~~~~~v~~v~~-spd~~-~la~~~~-~~~ 526 (927)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..... ..+..+.. .+++. .+..... ++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD----SSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC----CceeeEEEECCCcceEEeccCCCCcc
Confidence 457899999999999999999999999999999998876 3333321111 22333333 55544 2222222 333
Q ss_pred eeeecccccccccccccCcccccceEeecCC--CceEEEccCCCCEEEEEecCCc-EEEEEeC-CCcEEEEeCCCCcEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSKSQ-HLLSSSM-DKTVRLWHLSSKTCLK 602 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH~~~V~~l~~spd~-~L~Sgs~-DgtV~lWDl~t~~~~~ 602 (927)
+ .+|+... .....+..|...|..++|+|++ .+++++. |+.+++|++..+..+.
T Consensus 136 ~-----------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 136 V-----------------------KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred E-----------------------EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 3 4555553 7778899999999999999994 6777775 9999999999988887
Q ss_pred EEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 603 IFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 603 ~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
.+. |...|.+++|+| ++. ++++++.|+.|++||...+..+. ...+.... ...|+|++.++++++.++.+++|++
T Consensus 193 ~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 193 TLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred eeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 777 899999999998 776 55555999999999998777776 33344443 3389999999999999999999999
Q ss_pred CCCee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee--cCCcceEEEEEecCC
Q 002407 679 SENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF--RNTNSQISASLTANG 755 (927)
Q Consensus 679 ~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~--~~~~~v~sv~fspdg 755 (927)
..... .... ..|...|.++.|.|++. .+++++.|+.+.+||........... .+...+..+.|.+++
T Consensus 271 ~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (466)
T COG2319 271 RSSSSLLRTL---------SGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG 340 (466)
T ss_pred cCCCcEEEEE---------ecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCC
Confidence 87665 2221 26688999999999766 56668888889999865443322222 344467888884343
Q ss_pred CEEEEE-ECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCccee
Q 002407 756 RYVVSA-SEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEE 833 (927)
Q Consensus 756 ~~Lasg-s~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~ 833 (927)
..++.+ ..|+.+++|++.............. .....+........ ..-++...+|...............
T Consensus 341 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 412 (466)
T COG2319 341 SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT------- 412 (466)
T ss_pred CEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccCeeeeeccCCC-------
Confidence 556555 6889999999988661111111110 11112222111111 2233444455433332211111000
Q ss_pred ccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchh
Q 002407 834 ISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEK 875 (927)
Q Consensus 834 l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~ 875 (927)
.......+++++..+++.+ .+..+..|....
T Consensus 413 -------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 443 (466)
T COG2319 413 -------SRVTSLDFSPDGKSLASGS----SDNTIRLWDLKT 443 (466)
T ss_pred -------CcEEEEEECCCCcEEEEec----CCCcEEEEeccC
Confidence 1223345888998888744 566777887654
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=8.8e-17 Score=175.13 Aligned_cols=270 Identities=14% Similarity=0.203 Sum_probs=196.5
Q ss_pred CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecc-cccCCceeeecccccccccccccCcccccceEeecC
Q 002407 478 CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP-KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS 556 (927)
Q Consensus 478 gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 556 (927)
..++|||+...+...++... .....++.+.|.....+++. ...+..+..+.+......
T Consensus 12 d~~kl~D~s~~~~~~~~~~~---t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~------------------ 70 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQ---TAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE------------------ 70 (673)
T ss_pred CceEEeecccccCccccccC---CCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc------------------
Confidence 36999999988776665422 12233778888877653333 233333333222211000
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
-..+..+.+. .-.|++.... -++++|+..+.|+|||++...+.+.+. |...|+++.++- .+.||++++..|.|.|
T Consensus 71 Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 71 VPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIII 147 (673)
T ss_pred cceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEE
Confidence 0111122222 2334433333 689999999999999999777777666 999999999998 8899999999999999
Q ss_pred EeCCCCcEEEeccCC--CcEEEEEECCCCCE-EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLH--EMVTAACYTPDGQG-ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~--~~V~sla~spdg~~-l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
..+.++.....+.+. ..|.-+.|+|..++ |.+++.+|.|.+||+........+. ..|..+...|+|+|.
T Consensus 148 h~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--------~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--------EAHSAPCRGICFSPS 219 (673)
T ss_pred EecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--------hhccCCcCcceecCC
Confidence 999998877666655 45678999997765 5668899999999998876665543 589999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 712 SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
+..+|++.+.|..|.+||.+..... .......+...++|.++|.+|+.|...|.|+.||++..+.|..
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQAST-DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred ccceEEEecccceEEEeeccccccc-ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCce
Confidence 9988999999999999996532221 1222356788999999999999999999999999998766643
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.1e-16 Score=169.73 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=188.4
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+-++.+.+.+|.+.|.+|.|+.++++||+||.|..++||.+...-...
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-------------------------------- 92 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-------------------------------- 92 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc--------------------------------
Confidence 345557788999999999999999999999999999999985421000
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEc-cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~-gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
..||+.... .|...|.||+|.-. .+|++|..+++|.+.|+++.+.+.
T Consensus 93 -------------------------------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~ 141 (609)
T KOG4227|consen 93 -------------------------------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY 141 (609)
T ss_pred -------------------------------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee
Confidence 113333332 36689999999876 779999999999999999999999
Q ss_pred EEecCC---ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc----EEEeccCCCcEEEEEECCCC-CEEEEEECCCeEE
Q 002407 603 IFSHSD---YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ----VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCH 674 (927)
Q Consensus 603 ~~~h~~---~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~----~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~ 674 (927)
++.|.. .|+.+..+| ..+.|++.+.++.|.+||++..+ ++...........+.|+|.. .+|++.+..+-+-
T Consensus 142 V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~ 220 (609)
T KOG4227|consen 142 VANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPN 220 (609)
T ss_pred eecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCC
Confidence 998766 899999999 68899999999999999998754 44445556678889999965 5677888889999
Q ss_pred EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEe------ecCCcceE
Q 002407 675 LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKG------FRNTNSQI 747 (927)
Q Consensus 675 IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~------~~~~~~v~ 747 (927)
+||++....... +... .+........-.++.|+|.|. .+++--....-.+||... ....++. .-+...+.
T Consensus 221 ~~D~R~~~~~~~-~~~~-~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 221 VFDRRMQARPVY-QRSM-FKGLPQENTEWMGSLWSPSGN-QFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIK 297 (609)
T ss_pred ceeeccccchHH-hhhc-cccCcccchhhhheeeCCCCC-eehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeee
Confidence 999986442211 1000 000111122336778999987 455544444445566332 1222222 11233455
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 748 SASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 748 sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++|..|- .+++|+.+-.|+||.+....
T Consensus 298 S~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 298 SMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred eeeeecce-eeeccCcccceEEEecCCCc
Confidence 77886654 49999999999999996543
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.74 E-value=5.1e-17 Score=169.92 Aligned_cols=279 Identities=18% Similarity=0.299 Sum_probs=198.9
Q ss_pred EeecCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC----CCeeccc
Q 002407 451 EIQAHNGSIWSIKFSL-----DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPK 521 (927)
Q Consensus 451 ~L~gH~~~I~~vafSp-----dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd----~~~la~~ 521 (927)
....|+.+|..++|.+ +-..+||+|. ..|.||+......+..++......+....+.++|..+ ..+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3468999999999985 2346777774 4789998876654454443334455666667777654 3456666
Q ss_pred ccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc
Q 002407 522 HLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 522 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
+.-+.|.. +.-.+++....+.+|...|+.|.++|+ ++|+++|.|.+||+|++++..
T Consensus 112 G~~GvIrV----------------------id~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 112 GYLGVIRV----------------------IDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred cceeEEEE----------------------EecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 55555522 222355677788999999999999998 699999999999999999999
Q ss_pred EEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 600 CLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 600 ~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
|+.+|. |.+.|.++.|++ ++.+|++++.|.+|++|++...+....+.. +..|+|++...-.- .-.+.+
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pfp--t~~~~f 241 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPFP--TPKTHF 241 (385)
T ss_pred EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhh-----hcccCCCCccCcCC--cccccc
Confidence 999996 999999999999 999999999999999999987654332221 24566665431100 112233
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE----------------EEEe
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH----------------KFKG 739 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~----------------~~~~ 739 (927)
.+..+ ..-|...|-|+.|.-+ ++++=+-++.|..|...++.. .+..
T Consensus 242 p~fst---------------~diHrnyVDCvrw~gd---~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~ 303 (385)
T KOG1034|consen 242 PDFST---------------TDIHRNYVDCVRWFGD---FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY 303 (385)
T ss_pred ccccc---------------cccccchHHHHHHHhh---heeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc
Confidence 33221 1368888999998863 788888899999998533221 2222
Q ss_pred ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
......-...+|.+-+++||.|...|.|++||++..+++
T Consensus 304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 222223345677788999999999999999999987765
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=8.1e-16 Score=171.29 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=104.7
Q ss_pred cEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 651 MVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 651 ~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|+.+.|.| |...|++++.||.|+||.+..+.+..... .+......|...|+++.|+|--..+|++++.|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~--tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM--TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--CcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 477888888 67789999999999999998765443221 122334689999999999997767899999999999999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
+...........|...|..++|+|+|+.+|+.+.||+|++|+-+..+.+.
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 87766666666678889999999999999999999999999998876554
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=1.1e-16 Score=173.48 Aligned_cols=234 Identities=17% Similarity=0.225 Sum_probs=183.0
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeE------------------eecCCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQE------------------IQAHNGSIWSIKFSLDG-RYLASAGEDCVIH 481 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~------------------L~gH~~~I~~vafSpdG-~~LaSgs~DgtVr 481 (927)
..+++.|..+..|.+|++.-.+ .++++-. -.+|+..|..|+|...- ..|||||.|.+|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d--~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVD--AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred cceEEEeccCceeEEecccccc--ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 3578889999999999875432 1122222 23799999999998754 4899999999999
Q ss_pred EEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceE
Q 002407 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPIC 561 (927)
Q Consensus 482 VWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~ 561 (927)
+||+.++++. .
T Consensus 270 lWD~~~g~p~---------------------------------------------------------------------~ 280 (463)
T KOG0270|consen 270 LWDVDTGKPK---------------------------------------------------------------------S 280 (463)
T ss_pred EEEcCCCCcc---------------------------------------------------------------------e
Confidence 9999877533 3
Q ss_pred EEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
++..|.+.|.++.|+|. ..|++|+.|++|.|.|.+.. ..-..+...+.|-.++|.|.....++++..||+|+-+|++
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 44568999999999997 78999999999999999853 3334455788999999999888899999999999999998
Q ss_pred CC-cEE-EeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ER-QVV-DWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~-~~v-~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.. +++ ....|.+.|.++++++.- .++++++.++.+++|++..........- .-.-+...|+++.|+-...
T Consensus 361 ~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~-------~~~~~rl~c~~~~~~~a~~ 433 (463)
T KOG0270|consen 361 NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH-------SFKLGRLHCFALDPDVAFT 433 (463)
T ss_pred CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc-------cccccceeecccCCCcceE
Confidence 85 554 456777899999999854 4688899999999999876544322111 1122347788999998888
Q ss_pred EEEEECCCcEEEEECCc
Q 002407 716 VLVTSADSRIRVVDGID 732 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~ 732 (927)
+++|+..+.++|||..+
T Consensus 434 la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFT 450 (463)
T ss_pred EEecCccceEEEeeccc
Confidence 99999999999999644
No 156
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=162.33 Aligned_cols=276 Identities=14% Similarity=0.215 Sum_probs=195.7
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++.|..+|+|-+|+..+..+. +.|.+|..+|++++||+||+.|+|++.|..|.+||+..+..+.++.
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~ia-----r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----- 104 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIA-----RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----- 104 (405)
T ss_pred cceeeeeccCCcEEEEEccccchh-----hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-----
Confidence 356889999999999997766544 4568999999999999999999999999999999998877555431
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-- 578 (927)
...+|+...|+|.
T Consensus 105 -----------------------------------------------------------------f~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 105 -----------------------------------------------------------------FDSPVWGAQWHPRKR 119 (405)
T ss_pred -----------------------------------------------------------------ccCccceeeeccccC
Confidence 3456666777764
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--C
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--E 650 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~ 650 (927)
+..++.-.+..-.+-++..+.. ..+. ......+..|.+ .|++|++|...|.+.++|..+.+++..+... .
T Consensus 120 n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~ 197 (405)
T KOG1273|consen 120 NKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQ 197 (405)
T ss_pred CeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechhe
Confidence 4455555555455555543211 1111 111223346888 9999999999999999999999998766544 5
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec-cccc-ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS-PINL-QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~-~i~~-~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
.|..+-++..|..|++-+.|..|+.|+++.-.....- .+.. +.....-....-.+++|+.+|.++++.+.....++||
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence 7899999999999999999999999998732111000 0000 0000011223345788999988555555567889999
Q ss_pred E--CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 729 D--GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 729 D--~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
. .+.++..+.+.+. .....+.|+|-...|++- ..|.|+||.....
T Consensus 278 E~~~GsLVKILhG~kg-E~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 278 EKSIGSLVKILHGTKG-EELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecCCcceeeeecCCch-hheeecccccceeeeeec-cCCceEEEEeecc
Confidence 8 4567777766532 456788999988888887 7899999987653
No 157
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-15 Score=158.84 Aligned_cols=211 Identities=18% Similarity=0.269 Sum_probs=154.4
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc----EEEEEe-cCCceEEEEEcc-CCCCEEEEEECCCcEEEEe
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT----CLKIFS-HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~----~~~~~~-h~~~V~~v~fsp-~dg~~L~sgs~Dg~I~IWD 636 (927)
.+|.+-|.++.|.+- .++++|+.|++|+|||..... +..... |.+.|..|.|.+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478899999999987 679999999999999975432 333333 999999999954 4588999999999999997
Q ss_pred CCCC----------cEEEeccCCCcEEEEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccc----cccccCCC
Q 002407 637 IPER----------QVVDWNDLHEMVTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKRSHQ 700 (927)
Q Consensus 637 l~t~----------~~v~~~~~~~~V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----~~~~~~h~ 700 (927)
-... ++..+.+....|+.++|.| -|-.+++++.||.++||+.-....+...++... ......+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 1123445567899999999 567899999999999998765433332222111 11122456
Q ss_pred CCeEEEEEcCCC--CcEEEEEECC-----CcEEEEEC----CcceEEEEeecCCcceEEEEEecC----CCEEEEEECCC
Q 002407 701 RKITGFQFAPGS--SSEVLVTSAD-----SRIRVVDG----IDLVHKFKGFRNTNSQISASLTAN----GRYVVSASEDS 765 (927)
Q Consensus 701 ~~Vtsl~fspdg--~~~Llsgs~D-----g~I~VwD~----~~~~~~~~~~~~~~~v~sv~fspd----g~~Lasgs~Dg 765 (927)
....|+.|+|.. ..+|++|+.+ +.++||.. ++....-....+..+|..++|.|+ -.+||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 677899998742 2367777655 57888873 344444455567889999999996 35799999999
Q ss_pred cEEEEECCCC
Q 002407 766 YVYVWKYEAE 775 (927)
Q Consensus 766 ~I~IWdl~s~ 775 (927)
|+||++...
T Consensus 250 -v~I~~v~~~ 258 (361)
T KOG2445|consen 250 -VRIFKVKVA 258 (361)
T ss_pred -EEEEEEeec
Confidence 999999763
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=166.77 Aligned_cols=279 Identities=14% Similarity=0.232 Sum_probs=192.3
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
..++++...+.|++|++.++.+. +++++|...+..|.|.. ....+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l-----~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---- 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL-----EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---- 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh-----heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----
Confidence 34677888999999999875543 56689999999999987 45689999999999999997765443321
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC-CCEEEEEecCC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL-DDVLDLSWSKS 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd 578 (927)
+.+|. .+..+++..-.
T Consensus 112 ---------------------------------------------------------------~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 112 ---------------------------------------------------------------WTQQSGTPFICLDLNCK 128 (376)
T ss_pred ---------------------------------------------------------------ccCCCCCcceEeeccCc
Confidence 12222 33445554433
Q ss_pred -cEEEEEe----CCCcEEEEeCCCCcE-EEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEec
Q 002407 579 -QHLLSSS----MDKTVRLWHLSSKTC-LKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWN 646 (927)
Q Consensus 579 -~~L~Sgs----~DgtV~lWDl~t~~~-~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~ 646 (927)
+.+++|. .+-.|.+||++..+. +..+. |.+.|++|+|+|.+.++|++|+.||.|.|||+... .++..+
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi 208 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI 208 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh
Confidence 4445443 255699999998766 55554 99999999999999999999999999999998754 345567
Q ss_pred cCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccc---cccccCCCCCeEEEEEcCCCCcEEEEEEC-
Q 002407 647 DLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQ---NKKKRSHQRKITGFQFAPGSSSEVLVTSA- 721 (927)
Q Consensus 647 ~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~---~~~~~~h~~~Vtsl~fspdg~~~Llsgs~- 721 (927)
.+...|..+.|..++ +.|.+-+......+|+++.+.....+..+.. ..+.......+... .+|.+...+++++.
T Consensus 209 N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTD 287 (376)
T ss_pred cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccc
Confidence 777889999999877 5588888999999999998875544332200 00011111122222 23443334444443
Q ss_pred CCcEEEEEC--------CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 722 DSRIRVVDG--------IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 722 Dg~I~VwD~--------~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-+...++-. .+....+.+. +..-|.++.|...+.++.||++||.+.+|....
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 455555431 1223333332 445567788888899999999999999999744
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-16 Score=174.51 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=188.8
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
..-..+..+++|.|.-+ +..+.....+.+. .-.|++......|+++||..+.|+|||+... .+..+ ..+|..
T Consensus 51 as~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k-l~hr~----lkdh~s 122 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK-LIHRF----LKDHQS 122 (673)
T ss_pred eecCCceeEEEecccCC-CCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH-HHhhh----ccCCcc
Confidence 44456777888876544 2222222223332 3345554445589999999999999999843 33322 467889
Q ss_pred cEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC-CCCEEEEEecCC--cEE
Q 002407 505 MLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-LDDVLDLSWSKS--QHL 581 (927)
Q Consensus 505 ~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH-~~~V~~l~~spd--~~L 581 (927)
.|.++.+.....+||+...++.+....... ......|... ...|.-+.|++. .+|
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t----------------------~~~tt~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKT----------------------KQKTTTFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEeccc----------------------CccccceecCCCCeEEEeecccccceee
Confidence 999999999999999988888774332211 1112223322 345668999997 457
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
.+++.+|.|.+||+....++..+. |..+...|+|+|.+..+|++.+.|..|.+||+........+....+...++|.+
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~ 260 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSE 260 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecC
Confidence 889999999999999888887765 999999999999889999999999999999999988888888888999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+|.+|++|...|.|..||++..+..... ...|...|++++|-|.
T Consensus 261 ~G~~L~aG~s~G~~i~YD~R~~k~Pv~v--------~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 261 CGTYLCAGNSKGELIAYDMRSTKAPVAV--------RSAHDASVTRVAFQPS 304 (673)
T ss_pred CceEEEeecCCceEEEEecccCCCCceE--------eeecccceeEEEeeec
Confidence 9999999999999999999876533222 2478888999999885
No 160
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=8.1e-15 Score=170.71 Aligned_cols=322 Identities=15% Similarity=0.194 Sum_probs=212.6
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG---RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG---~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
......|.+|...+++... .|.+|..+++.+.+.|.. .|+++++.||.|++||...+..+..+.... +.
T Consensus 33 ~~~~~~V~VyS~~Tg~~i~-----~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~---~v 104 (792)
T KOG1963|consen 33 LCTGNFVKVYSTATGECIT-----SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL---PV 104 (792)
T ss_pred EeeCCEEEEEecchHhhhh-----hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC---ce
Confidence 3455678889877776554 668999999999998854 488899999999999999998777763211 11
Q ss_pred ccEEE-EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 504 NMLLL-ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 504 ~~v~~-v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
..... .++......+.....+..+..... ...........+-.........+.+|.. -.+|.+++.+.+.
T Consensus 105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s--------~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~ 175 (792)
T KOG1963|consen 105 HALVYKPAQADISANVYVSVEDYSILTTFS--------KKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFK 175 (792)
T ss_pred eEEEechhHhCccceeEeecccceeeeecc--------cccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEE
Confidence 11111 111111111111111111110000 0000000000011111122222333333 3567777777788
Q ss_pred EEeCCCcEEEEeCCCCcEEEEE------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-----CcEEEeccCCCc
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIF------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-----RQVVDWNDLHEM 651 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-----~~~v~~~~~~~~ 651 (927)
....+..+.+|....+. ..+. .|...++|.+++| ++++++++..||.|.+|.--. ..+..+.-|+..
T Consensus 176 ~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~ 253 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE 253 (792)
T ss_pred EEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence 88888899999998765 2111 2777799999999 999999999999999995322 233445667889
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
|++++|+++|.+|++|+..+.+.+|.+.+++.... ..-..+|..+.++||+. ..+....|.+|.+....
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfL----------PRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFL----------PRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKAS 322 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCCcccc----------cccCCeeEEEEEcCCCC-eEEEEecCceEEEEecc
Confidence 99999999999999999999999999999883221 35678899999999987 67777889999998853
Q ss_pred cceEE--EEeec---------CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 732 DLVHK--FKGFR---------NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 732 ~~~~~--~~~~~---------~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++..+ ..+.. ...-.+.++++|--+.++-.+..|.|.+||+-+....
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 32211 11111 1233456888997777888889999999999887654
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=9.1e-16 Score=170.84 Aligned_cols=299 Identities=17% Similarity=0.162 Sum_probs=206.4
Q ss_pred cCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
+...+-..+.||++.|.+|...|. ..|++|+.||+|+||.+.++.|++++.....|.||+|+|....-+++......+.
T Consensus 388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceE
Confidence 344556678999999999999998 7899999999999999999999999999999999999995444455544444444
Q ss_pred EEeCCCC-----------------------c---------------EEEeccCCCcEEEEEECCCCCEEEEEECC---Ce
Q 002407 634 IWSIPER-----------------------Q---------------VVDWNDLHEMVTAACYTPDGQGALVGSYK---GS 672 (927)
Q Consensus 634 IWDl~t~-----------------------~---------------~v~~~~~~~~V~sla~spdg~~l~tgs~D---g~ 672 (927)
|.+..-| + +...+.+...|..+.|+..|.||++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 4432111 0 11234556789999999999999997664 46
Q ss_pred EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 673 I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
|.|+++.....+..+ ....+.|.++.|+|.... |+++ ....|+|||+......-+.......|..++++
T Consensus 548 VliHQLSK~~sQ~PF---------~kskG~vq~v~FHPs~p~-lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPF---------RKSKGLVQRVKFHPSKPY-LFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred EEEEecccccccCch---------hhcCCceeEEEecCCCce-EEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeec
Confidence 999999876655333 345677999999998774 3333 35679999965433322333456678899999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCCcc-cccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCc
Q 002407 753 ANGRYVVSASEDSYVYVWKYEAESRPS-RSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTP 830 (927)
Q Consensus 753 pdg~~Lasgs~Dg~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~ 830 (927)
|.|.-|+.++.|+.+..||+.-...+- .++.+........||..=-..+ .+-+|+..++- +.++.--..+....|
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh---g~VY~Dl~qnpliVP 693 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH---GMVYNDLLQNPLIVP 693 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe---eeeehhhhcCCceEe
Confidence 999999999999999999998876553 2333333334445554422223 33346654432 111111122333455
Q ss_pred ceeccCCCcc--cCcceeeecCCCCeEEEeccccccCcccccc
Q 002407 831 VEEISGNEDC--RSATGYTNSPLNGTISSATNSYFFDRISATW 871 (927)
Q Consensus 831 ~~~l~~~~~~--~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W 871 (927)
+..+.+|... ..+..+.|.|.--+|++++ +|+++++|
T Consensus 694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG----Ad~tirlf 732 (733)
T KOG0650|consen 694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG----ADGTIRLF 732 (733)
T ss_pred eeeccCceeecccceEeecccCCCceEEecC----CCceEEee
Confidence 5556666444 3334457999999999998 88888877
No 162
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=9.4e-16 Score=164.57 Aligned_cols=308 Identities=21% Similarity=0.309 Sum_probs=215.7
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccc---ee-ecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 456 NGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKG---EL-LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 456 ~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~---~l-~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
..+|..+.|.+... .|||||.|..|+||.+....... .+ .......|...+..+.|+|+|.+++++++++.+..+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999776 99999999999999987655333 22 244567889999999999999999999999998877
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCC
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSD 608 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~ 608 (927)
........ +.-. +.......-.....+.+|...|..++|+|+ .++++++.|.++++||+..|+.+..+. |..
T Consensus 93 k~~~~~~~-----~~d~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIF-----DADT-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCc-----cccc-hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 66531000 0000 111111222445678899999999999999 779999999999999999999999887 999
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--------------------C----CCcEEEEEECCCCCEE
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--------------------L----HEMVTAACYTPDGQGA 664 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~--------------------~----~~~V~sla~spdg~~l 664 (927)
.|..++|.| ..+++++-+.|...+.+.+...+++.... | +.-...++|+|+|..+
T Consensus 167 yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 999999999 89999999999877777765543322111 0 1234568899999999
Q ss_pred EEEEC----CC-----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC-------C---------CcEEEEE
Q 002407 665 LVGSY----KG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-------S---------SSEVLVT 719 (927)
Q Consensus 665 ~tgs~----Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-------g---------~~~Llsg 719 (927)
++... .+ ..++|+-.. +... .............+.|+|- . -.++++-
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~---l~rP-----~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfai 317 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKD---LKRP-----AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAI 317 (434)
T ss_pred EcccceeeeCCceeeceeEeecccc---ccCc-----eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEE
Confidence 88532 12 223343221 1110 0111234445555555541 0 0134444
Q ss_pred ECCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 720 SADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.....|+|||+......+. ...|...++.++|++||.+|+..+.||..-+-.++..+.-
T Consensus 318 At~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 318 ATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred eecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 5567899999776433222 1235678999999999999999999999888888776543
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=159.39 Aligned_cols=202 Identities=21% Similarity=0.338 Sum_probs=152.8
Q ss_pred CCEEEEEec-------CC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCc---eEEEEEccCCCCEEEEEECCCcEE
Q 002407 568 DDVLDLSWS-------KS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDY---VTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 568 ~~V~~l~~s-------pd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~---V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
..|...+|- |+ .++++.+.+.-|++||.-+|+....+. |.+. ..+++|+| ||.+|++|. ...|+
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGy-krcir 182 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIR 182 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeecc-cceEE
Confidence 346666664 34 688999999999999999999887765 5544 46899999 999988765 57899
Q ss_pred EEeC-CCCcE---EEe-----ccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 634 IWSI-PERQV---VDW-----NDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 634 IWDl-~t~~~---v~~-----~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+||+ +.|.- ... +...+.|.+++|+| +.+.+++|+.-..+-||.-.....+... .+|.+.|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------ggh~gGv 253 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------GGHGGGV 253 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------cccCCCe
Confidence 9999 44432 112 22346899999999 5568999999999999988877776654 4899999
Q ss_pred EEEEEcCCCCcEEEEE-ECCCcEEEEECCcce---EEEEeecC-CcceEEEEEecCCCEEEEEECCCcEEEEECCC-CCC
Q 002407 704 TGFQFAPGSSSEVLVT-SADSRIRVVDGIDLV---HKFKGFRN-TNSQISASLTANGRYVVSASEDSYVYVWKYEA-ESR 777 (927)
Q Consensus 704 tsl~fspdg~~~Llsg-s~Dg~I~VwD~~~~~---~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s-~~~ 777 (927)
+.++|.++|. .|++| -.|..|..||.+... -.+..+.. ...-+-+.+.|++++|++|+.||.|++||++. +..
T Consensus 254 ThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 254 THLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeEEeccCcC-eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999998 56666 468899999976433 23333333 33444567789999999999999999999998 443
Q ss_pred cccc
Q 002407 778 PSRS 781 (927)
Q Consensus 778 ~~~~ 781 (927)
+...
T Consensus 333 ~sv~ 336 (406)
T KOG2919|consen 333 VSVT 336 (406)
T ss_pred cccc
Confidence 4433
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8e-17 Score=191.57 Aligned_cols=293 Identities=16% Similarity=0.174 Sum_probs=213.7
Q ss_pred EEEEcCCCC-EEEEE----------eCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCe----ecccccCC
Q 002407 461 SIKFSLDGR-YLASA----------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTS----LSPKHLDN 525 (927)
Q Consensus 461 ~vafSpdG~-~LaSg----------s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~----la~~~~~~ 525 (927)
.++|+|++. +||+| +.+.++-||.+........+..............+.|.+.+.. |+.+..++
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 478999887 66654 3355677777654433322221112223344556777776554 78888888
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
.+..+.....+ -......+.++..|.+.|..|.|++. +.|++|+.||.|.|||+...+.-..
T Consensus 91 ~I~ly~p~~~~----------------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 91 NIVLYDPASII----------------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred ceEEecchhhc----------------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC
Confidence 87655433211 11223456677889999999999997 5899999999999999987554444
Q ss_pred Ee---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCC--CcEEEEEECCCCC-EEEEEECCC---eE
Q 002407 604 FS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLH--EMVTAACYTPDGQ-GALVGSYKG---SC 673 (927)
Q Consensus 604 ~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~--~~V~sla~spdg~-~l~tgs~Dg---~I 673 (927)
+. ....|.+++|+......|++++.+|.+.|||++..+.+- +..+. ..+..++|+|+.. .|++++.|. .|
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 42 567899999998778889999999999999999876553 33332 3588999999764 566666654 49
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.+||++.-..-... ...|...|.++.|++.+..+|++++.|++|.+|+..+............++..+.|.|
T Consensus 235 qlWDlR~assP~k~--------~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 235 QLWDLRFASSPLKI--------LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred EeecccccCCchhh--------hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecC
Confidence 99998764332221 2489999999999999988999999999999999877655555555677899999999
Q ss_pred CCC-EEEEEECCCcEEEEECCCCCC
Q 002407 754 NGR-YVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 754 dg~-~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
... .|++++-||.|-||.+.+...
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCCc
Confidence 766 788889999999999988653
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=8.7e-13 Score=147.63 Aligned_cols=318 Identities=24% Similarity=0.406 Sum_probs=227.6
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEE-cCCCC-EEEEEeC-CCcEEEEecCc-Cccccee
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKF-SLDGR-YLASAGE-DCVIHVWQVVE-SERKGEL 494 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vaf-SpdG~-~LaSgs~-DgtVrVWdv~~-~~~~~~l 494 (927)
....+..+..++.+.+|+..... .....+.++. ..+..+.+ ++++. +++..+. |+.+++|++.. ......+
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL 151 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCc----eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence 34445666688899999877664 1223445533 47888888 88888 5555455 99999999987 4333332
Q ss_pred ecccccCccccEEEEccCCCCCeeccccc-CCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLD 572 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~ 572 (927)
..+...+..+.+++++..++.+.. ++.+ .+|... .+.+..+.+|...|.+
T Consensus 152 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 152 -----EGHSESVTSLAFSPDGKLLASGSSLDGTI-----------------------KLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred -----ecCcccEEEEEECCCCCEEEecCCCCCce-----------------------EEEEcCCCceEEeeccCCCceEE
Confidence 456677779999999876666653 5544 344443 4677788889999999
Q ss_pred EEecCCc--EEEEEeCCCcEEEEeCCCCcEEE-EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EE-ec
Q 002407 573 LSWSKSQ--HLLSSSMDKTVRLWHLSSKTCLK-IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VD-WN 646 (927)
Q Consensus 573 l~~spd~--~L~Sgs~DgtV~lWDl~t~~~~~-~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~-~~ 646 (927)
++|+|++ .+++++.|+.|++||...+..+. .+. |...+ ...|+| ++.++++++.|+.+++|++..... +. ..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 281 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence 9999885 44555999999999999888777 454 76665 448999 778899999999999999987653 33 33
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRI 725 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I 725 (927)
.+...+.++.|.|++..+++++.|+.+.+|++.......... ...|...+..+.| +.....++.+ ..|+.+
T Consensus 282 ~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-------LKGHEGPVSSLSF-SPDGSLLVSGGSDDGTI 353 (466)
T ss_pred cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-------ecccCCceEEEEE-CCCCCEEEEeecCCCcE
Confidence 556899999999998888889999889999988877655532 1256667999999 4331245555 688999
Q ss_pred EEEECCcceEEEEeecCCcceEEEEEecCCCEEEE-EECCCcEEEEECCCCCCcccc
Q 002407 726 RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS-ASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las-gs~Dg~I~IWdl~s~~~~~~~ 781 (927)
.+|+..... ..........+..+.+.+ ...++. +..++.+.+|+..........
T Consensus 354 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 354 RLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred EeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 999966554 222222222277888888 544444 688999999999887654333
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.2e-16 Score=175.42 Aligned_cols=260 Identities=20% Similarity=0.294 Sum_probs=190.1
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
++..|...|+.++|.|-...|++|+.||+|++|++...... .
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-------------------------------~------- 330 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-------------------------------A------- 330 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-------------------------------c-------
Confidence 56789999999999999999999999999999998331100 0
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC----------c
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----------T 599 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~----------~ 599 (927)
...-+++.+|.+|.++|.|+++.++ ..+++|+.||+|+.|++... .
T Consensus 331 -----------------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 331 -----------------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred -----------------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 0122788899999999999999998 78999999999999966521 1
Q ss_pred EEEE-EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCC-CEEEEEECCCeEEE
Q 002407 600 CLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDG-QGALVGSYKGSCHL 675 (927)
Q Consensus 600 ~~~~-~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg-~~l~tgs~Dg~I~I 675 (927)
...+ .+|++.|+.+++++ ....|++++.||++++|+........+. .-+...+++.+.... .+.++...-+.-.+
T Consensus 388 l~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred hccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccc
Confidence 1122 24999999999999 8888999999999999998776662222 223455666665433 23333333333344
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
+++........+.... .........+.-+.++|..+ +.+++..|+.|+++|.......+....+...++++++.|+|
T Consensus 467 ~~~ev~s~~~~~~s~~--~~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng 543 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSA--SPGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNG 543 (577)
T ss_pred hhhhhhhheeeccccC--CCcccccCccceEEecCCCC-eeEecccCCceecccccccccchheeeccceecceeecCCC
Confidence 4444433332222110 01112235577888999886 89999999999999977666666666677889999999999
Q ss_pred CEEEEEECCCcEEEEECCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~ 775 (927)
-+|++++.|+.|++|.+...
T Consensus 544 ~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ceEEeecCCceeehhhccch
Confidence 99999999999999999753
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.67 E-value=4.9e-15 Score=165.93 Aligned_cols=272 Identities=16% Similarity=0.254 Sum_probs=210.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.|..++|-|||..|+.+. +..+.|||..++..+.++ .+|...|.+++++.+|..+++++.+..+..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtL-----KgHKDtVycVAys~dGkrFASG~aDK~VI~-------- 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPL-----KGHKDTVYCVAYAKDGKRFASGSADKSVII-------- 79 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccc-----ccccceEEEEEEccCCceeccCCCceeEEE--------
Confidence 799999999999888775 457999999999988875 789999999999999999999988887633
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEc
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFN 616 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fs 616 (927)
|...-+-+..+ .|.+.|.||.|.|- ..|++++-. ..-+|....... ........|.+.+|.
T Consensus 80 ---------------W~~klEG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 80 ---------------WTSKLEGILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSSSRIICCSWT 141 (1081)
T ss_pred ---------------ecccccceeee-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-HhhhhheeEEEeeec
Confidence 33222222222 49999999999997 667777653 466888765433 223355678999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcEEEecc---CCCcEEEEEECCCC-----CEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWND---LHEMVTAACYTPDG-----QGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 617 p~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~---~~~~V~sla~spdg-----~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
. ||.+|+.|-.+|+|.|-+-...+.+.... .+.+|.+++|+|.. ..+++.....++.+|.+....+-..
T Consensus 142 n-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~-- 218 (1081)
T KOG1538|consen 142 N-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD-- 218 (1081)
T ss_pred C-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--
Confidence 8 99999999999999998765544444333 45799999999953 4788888899999998875443322
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
+.......|+.+.++|. +++.|+.|+.+.+|.- +.+..-.......+|+.++..|++++++.|+.||+|-
T Consensus 219 --------r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 219 --------RALNFDPCCISYFTNGE-YILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred --------ccCCCCchhheeccCCc-EEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeee
Confidence 24445677899999988 8999999999999973 3333222233577899999999999999999999999
Q ss_pred EEECCC
Q 002407 769 VWKYEA 774 (927)
Q Consensus 769 IWdl~s 774 (927)
.|++-.
T Consensus 289 CyNl~f 294 (1081)
T KOG1538|consen 289 CYNLIF 294 (1081)
T ss_pred hhhhHH
Confidence 999864
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=5.1e-16 Score=184.81 Aligned_cols=233 Identities=16% Similarity=0.231 Sum_probs=185.6
Q ss_pred CeEEEccCceEEEEeccCcc-cccceeeeeEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCK-DLTALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~-~l~~l~~~q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.+++.|..+|.|-+|+...- .-.....+.++..|+|.|..+.|++... +||+|+.||.|.|||+.+.+....+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---- 156 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---- 156 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC----
Confidence 46788999999999987641 1112223345678999999999999655 99999999999999997644222210
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
-..-.+.|.+|+|...
T Consensus 157 ---------------------------------------------------------------~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 157 ---------------------------------------------------------------SQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred ---------------------------------------------------------------CCCCcccceEeccchhh
Confidence 0113567999999986
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC--CceEEEEEccCCCCEEEEEECCCc---EEEEeCCCCc-EEEe-ccCC
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS--DYVTCIQFNPVDDRYFISGSLDAK---VRIWSIPERQ-VVDW-NDLH 649 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~--~~V~~v~fsp~dg~~L~sgs~Dg~---I~IWDl~t~~-~v~~-~~~~ 649 (927)
..|++++.+|.+.|||++..+.+-.+. +. ..+..|+|+|.+-..|++++.|.. |.+||++.-. .++. ..|.
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 668999999999999999988777776 22 347899999977777888887654 9999987642 3333 4677
Q ss_pred CcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 650 EMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 650 ~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+. .....+..+.|+|..+.++++++.||.|.||
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---------AQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---------CCCcceeeeeecCCCcchhhhheeccceeee
Confidence 899999999965 889999999999999999999988764 5678899999999999899999999999999
Q ss_pred EC
Q 002407 729 DG 730 (927)
Q Consensus 729 D~ 730 (927)
..
T Consensus 325 sl 326 (1049)
T KOG0307|consen 325 SL 326 (1049)
T ss_pred ee
Confidence 84
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.66 E-value=4.1e-15 Score=158.85 Aligned_cols=204 Identities=18% Similarity=0.288 Sum_probs=163.4
Q ss_pred EEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc-------EEEEE-ecCCceEEEEEccCCCCEEEEEECCCc
Q 002407 562 SFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-------CLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~-------~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
.+.||+++|.+++|+|- ..|++||.|.+|.||++..+. ++..+ .|...|--|+|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46799999999999984 789999999999999987543 33333 499999999999988999999999999
Q ss_pred EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC-CeEEEEEcC
Q 002407 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFAP 710 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fsp 710 (927)
|.+|++.+++.+-.+.|.+.|.+++|+.||.+|++.+.|..|+|||.++++.+.... .|.+ .-..+.|..
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---------~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---------AHEGAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc---------cccCCCcceeEEec
Confidence 999999999988878899999999999999999999999999999999999887742 3432 344566777
Q ss_pred CCCcEEEEEE----CCCcEEEEECCcceEEE--EeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 711 GSSSEVLVTS----ADSRIRVVDGIDLVHKF--KGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 711 dg~~~Llsgs----~Dg~I~VwD~~~~~~~~--~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
++. +++++ .+.++-+||..++.... ........|.---|.+|...|..++ .|+.|+-|.+.+..
T Consensus 227 ~g~--i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 227 SGK--IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cCc--eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 775 55543 57889999965543332 2222334455556788888876655 69999999998764
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.7e-13 Score=153.80 Aligned_cols=277 Identities=13% Similarity=0.191 Sum_probs=174.7
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcCcccceeecccccCcc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs-~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
++...++.|.+|+..+. ..+...+.+. +.+....|+|+|++++|+.++ .++.|.+|++.....+...
T Consensus 6 ~~~~~~~~I~~~~~~~~--g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~--------- 73 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA--------- 73 (330)
T ss_pred EEcCCCCCEEEEEECCC--CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------
Confidence 33456788999988532 1223334444 346677899999999987764 5788999998622111100
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL 582 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~ 582 (927)
... ...+....++|+|+ ++|+
T Consensus 74 ---------------------------------------------------------~~~-~~~~~p~~i~~~~~g~~l~ 95 (330)
T PRK11028 74 ---------------------------------------------------------AES-PLPGSPTHISTDHQGRFLF 95 (330)
T ss_pred ---------------------------------------------------------eee-cCCCCceEEEECCCCCEEE
Confidence 000 01123457889998 5566
Q ss_pred EEe-CCCcEEEEeCCCC----cEEEEEecCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCCCcEEE-------eccCC
Q 002407 583 SSS-MDKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPERQVVD-------WNDLH 649 (927)
Q Consensus 583 Sgs-~DgtV~lWDl~t~----~~~~~~~h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t~~~v~-------~~~~~ 649 (927)
+++ .++.|.+|++.+. +.+..+.+.....+++|+| ++++++++ ..++.|.+||+.+...+. .....
T Consensus 96 v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 96 SASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred EEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC
Confidence 655 4889999999742 2333333445577889999 88877554 456899999997632221 11223
Q ss_pred CcEEEEEECCCCCEEEEEEC-CCeEEEEECCC--CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcE
Q 002407 650 EMVTAACYTPDGQGALVGSY-KGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRI 725 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I 725 (927)
..+..+.|+|+|++++++.. ++.|.+|++.. +.......+...... .........+.|+|+++ +++++ ..++.|
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~i~~~pdg~-~lyv~~~~~~~I 252 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD-FSDTRWAADIHITPDGR-HLYACDRTASLI 252 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc-CCCCccceeEEECCCCC-EEEEecCCCCeE
Confidence 45678999999999988876 89999999973 332221111110000 01222344688999987 45555 457899
Q ss_pred EEEECCc--ceEEEEee-cCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCC
Q 002407 726 RVVDGID--LVHKFKGF-RNTNSQISASLTANGRYVVSASE-DSYVYVWKYEA 774 (927)
Q Consensus 726 ~VwD~~~--~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s 774 (927)
.+|+... ....+..+ ........+.|+|+|++|+++.. +++|.||+++.
T Consensus 253 ~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9998522 11122222 11223457899999999998775 88999999864
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1e-14 Score=153.70 Aligned_cols=191 Identities=16% Similarity=0.216 Sum_probs=151.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEE---EeccCC-CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVV---DWNDLH-EMV 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v---~~~~~~-~~V 652 (927)
..++++...|+|++||..+++.+..|. +...++.+.|... ....+++|+.||+|++||++..... .+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 468899999999999999999999998 8888889999763 3577999999999999999886433 333333 467
Q ss_pred EEEEECCCCCEEEEEEC----CCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 653 TAACYTPDGQGALVGSY----KGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~----Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
.+++..-.++.+++|+. +-.|.+||++..+. +..+. ..|...|++++|+|.++++|++|+.||.|.|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN--------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL 192 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh--------hhccCcceeEEecCCCCCeEEeecccceEEe
Confidence 77777777888888864 56799999998776 33322 5899999999999999999999999999999
Q ss_pred EECCcc---eEEEEeecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCC
Q 002407 728 VDGIDL---VHKFKGFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 728 wD~~~~---~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
||+... -..+....+...|..+.|..++ +.|.+-+.....++|+++.+..
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 996432 1122223345678899999877 4588888999999999998764
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.63 E-value=3.1e-15 Score=156.67 Aligned_cols=231 Identities=19% Similarity=0.349 Sum_probs=175.5
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+..+++.|...|.|++.+..++++. ..+.+|.++|+.|.|.|+. ++|++|+.|.+||+|++.+..++..+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~-----~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf---- 174 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCS-----KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF---- 174 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhc-----cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe----
Confidence 3456777779999999998877665 4558999999999999964 69999999999999999887654432
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.-+.||.+.|.++.|+.+
T Consensus 175 --------------------------------------------------------------GG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 175 --------------------------------------------------------------GGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred --------------------------------------------------------------cccccccCcEEEEEEcCC
Confidence 123579999999999998
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcE-------------------------EEEE----ecCCceEEEEEccCCCCEEEEEEC
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTC-------------------------LKIF----SHSDYVTCIQFNPVDDRYFISGSL 628 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~-------------------------~~~~----~h~~~V~~v~fsp~dg~~L~sgs~ 628 (927)
.+|+++++|.+|++|++...+. ...| -|..+|.|+.|- ++++++-+-
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSksc 269 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSC 269 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeeccc
Confidence 7899999999999999983211 1111 188889999985 589999999
Q ss_pred CCcEEEEeCCC-Cc-------------EEEeccCC-CcE--EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 629 DAKVRIWSIPE-RQ-------------VVDWNDLH-EMV--TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 629 Dg~I~IWDl~t-~~-------------~v~~~~~~-~~V--~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
++.|..|..-. ++ ++..+..+ ..| ...+|.|-+++||.|...|.|++||++........++.
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~- 348 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT- 348 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEE-
Confidence 99999998621 11 11112222 233 34566788899999999999999999987664222211
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.......|...+|+.++. +|+....|++|.-||.
T Consensus 349 ----~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 349 ----HSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWDR 382 (385)
T ss_pred ----eccccceeeeeeecccCc-EEEEEeCCCcEEEEEe
Confidence 123456789999999987 8888999999999983
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=5.6e-14 Score=163.84 Aligned_cols=266 Identities=13% Similarity=0.141 Sum_probs=191.3
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~ 510 (927)
.+.+|+...+. ...+. -.-...|+|++|+| +..+||.|..+|.|.+||+..+......
T Consensus 223 ~~~vW~~~~p~-~Pe~~----~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s---------------- 281 (555)
T KOG1587|consen 223 VLLVWSLKNPN-TPELV----LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS---------------- 281 (555)
T ss_pred eEEEEecCCCC-CceEE----EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc----------------
Confidence 68889887762 22111 22467899999999 5678888999999999999766432100
Q ss_pred cCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCC
Q 002407 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMD 587 (927)
Q Consensus 511 ~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~D 587 (927)
..-.....|..+|+.+.|..+ ..+++++.|
T Consensus 282 -----------------------------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 282 -----------------------------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred -----------------------------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 000112358999999999876 349999999
Q ss_pred CcEEEEeCCCCcE-E-----EEE-------ecCCceEEEEEccCCCCEEEEEECCCcEEEEe---CCCCc------EEEe
Q 002407 588 KTVRLWHLSSKTC-L-----KIF-------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS---IPERQ------VVDW 645 (927)
Q Consensus 588 gtV~lWDl~t~~~-~-----~~~-------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD---l~t~~------~v~~ 645 (927)
|.|..|+++.-.. . ... .....++++.|.+.+...|+.|+.+|.|..=+ ..... ....
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~ 394 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF 394 (555)
T ss_pred CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence 9999998874322 1 111 12356899999998999999999999987733 22222 1134
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC-CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
..|.+.|.++.++|-+..++..+.|.+++||... ....+..+ ..+...|++++|+|..+.+++++..||.
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~---------~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL---------DSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh---------hhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 5566899999999977666666669999999877 43333332 3566679999999998889999999999
Q ss_pred EEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 725 IRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 725 I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
|.|||+.. ................+.|+++|+.|++|...|++++|++..
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999532 111111112244456778888999999999999999999974
No 174
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=3.5e-14 Score=159.14 Aligned_cols=251 Identities=17% Similarity=0.262 Sum_probs=190.4
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~ 510 (927)
.++.+|+...+.+ .|+|+||++.|.|++|+.||+.+|+|+.|..|.||.-.-.. .+ .-.|...+.++.
T Consensus 33 ~rlliyD~ndG~l-----lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~L----kYSH~D~IQCMs 100 (1081)
T KOG1538|consen 33 SRLLVYDTSDGTL-----LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---IL----KYSHNDAIQCMS 100 (1081)
T ss_pred CEEEEEeCCCccc-----ccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---ee----eeccCCeeeEee
Confidence 3677888765543 47889999999999999999999999999999999854222 11 245778899999
Q ss_pred cCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCc
Q 002407 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT 589 (927)
Q Consensus 511 ~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dgt 589 (927)
|+|-...++++..... .+|....+.+...+ -...|.+++|..| .+|+.|-.+|+
T Consensus 101 FNP~~h~LasCsLsdF------------------------glWS~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGT 155 (1081)
T KOG1538|consen 101 FNPITHQLASCSLSDF------------------------GLWSPEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGT 155 (1081)
T ss_pred cCchHHHhhhcchhhc------------------------cccChhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCce
Confidence 9999888887754332 12333333333222 2456889999999 67899999999
Q ss_pred EEEEeCCCCcEEEEEe---cCCceEEEEEccCC----CCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC
Q 002407 590 VRLWHLSSKTCLKIFS---HSDYVTCIQFNPVD----DRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ 662 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~---h~~~V~~v~fsp~d----g~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~ 662 (927)
|.|-+-...+.+.+-. ...+|++|+|+|.. ...+++..+..++.+|.+....+-..........|+.+.++|.
T Consensus 156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE 235 (1081)
T ss_pred EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCc
Confidence 9999765544444443 67899999999943 3578888888889998887655544555666788999999999
Q ss_pred EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 663 GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 663 ~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++++|+.|+.+++|--. |-.+.+. ......|..++..|++. .++.|+.||+|.-|+
T Consensus 236 y~LiGGsdk~L~~fTR~-GvrLGTv---------g~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRD-GVRLGTV---------GEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYN 291 (1081)
T ss_pred EEEEccCCCceEEEeec-CeEEeec---------cccceeEEEEEEccCCc-eEEEEEccCeeehhh
Confidence 99999999999999644 4444332 23567899999999886 799999999999987
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=174.89 Aligned_cols=287 Identities=16% Similarity=0.273 Sum_probs=219.6
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
....++.|.+|..+|.|+.|...|.|++||+.|..|+||..++..++... .+|...+.-++.+.+..++++++.+
T Consensus 179 kmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-----RGHSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-----CCCccccchhccchhhhhhhhcccC
Confidence 44455678899999999999999999999999999999999888877764 6788888888888888888888888
Q ss_pred CceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
..|. +|.+ .+.++..+.||++.|++|+|+|-. +.+.||++++||.+ ...+..
T Consensus 254 ~vIr-----------------------vWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~~~~y 306 (1113)
T KOG0644|consen 254 KVIR-----------------------VWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LEPRIY 306 (1113)
T ss_pred ceEE-----------------------EEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEecccc-cccccc
Confidence 7773 4444 467888899999999999999954 88899999999988 111111
Q ss_pred ------EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEE
Q 002407 604 ------FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLY 676 (927)
Q Consensus 604 ------~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~Iw 676 (927)
+.....+..+.|.. ++..+++++.|+.-..|.+...... ...+.-+.++.+ ..+.+++-.+-.+.+|
T Consensus 307 ~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vw 380 (1113)
T KOG0644|consen 307 VPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVW 380 (1113)
T ss_pred CCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeee
Confidence 12445677788877 8888999999999988876432211 111111112211 2466677778889999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
++.++.+.+.. .+|...+..+.++|-++...++++.||.+.|||....+..-........+....|++||.
T Consensus 381 nl~~g~l~H~l---------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 381 NLYTGQLLHNL---------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT 451 (1113)
T ss_pred ecccchhhhhh---------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence 99999877664 488899999999999988888999999999999654332222223356677889999999
Q ss_pred EEEEEECCCcEEEEECCCCCCc
Q 002407 757 YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.++....-|.++|.....++..
T Consensus 452 s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eEecCCCCCceEEeccCCCccc
Confidence 9999999999999987665443
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.9e-15 Score=163.67 Aligned_cols=245 Identities=16% Similarity=0.200 Sum_probs=178.7
Q ss_pred cCCCCeEEEccCceEEEEeccC---cccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKS---CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~---s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
......++++..++++.+|+++ ......+..+-+|.+|.++|.|+++.+.+.++++||.||+|+.|++.........
T Consensus 303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds 382 (577)
T KOG0642|consen 303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS 382 (577)
T ss_pred CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence 3445667899999999999982 2223345566789999999999999999999999999999999987522100000
Q ss_pred ecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~ 574 (927)
.+ .......|.||.+.|+.++
T Consensus 383 ------------------~d-----------------------------------------p~vl~~~l~Ghtdavw~l~ 403 (577)
T KOG0642|consen 383 ------------------YD-----------------------------------------PSVLSGTLLGHTDAVWLLA 403 (577)
T ss_pred ------------------cC-----------------------------------------cchhccceeccccceeeee
Confidence 00 0012346789999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC--
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-- 648 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-- 648 (927)
+|.. .+|++++.||+|++|+.....+ .+|. ....-+.+.|-.....+.++...-+.--++++.....+.++..
T Consensus 404 ~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~ 482 (577)
T KOG0642|consen 404 LSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSA 482 (577)
T ss_pred ecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccC
Confidence 9998 7899999999999999887766 4443 3445566666541212333322222223333333333332221
Q ss_pred ------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 649 ------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 649 ------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
...+..+.++|.+.+.+++..|+.|+++|..++.++... ..|...++++++.|++. +|++++.|
T Consensus 483 ~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---------~a~~~svtslai~~ng~-~l~s~s~d 552 (577)
T KOG0642|consen 483 SPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---------VAHKDSVTSLAIDPNGP-YLMSGSHD 552 (577)
T ss_pred CCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe---------eeccceecceeecCCCc-eEEeecCC
Confidence 145778889999999999999999999999999988775 37889999999999988 89999999
Q ss_pred CcEEEEECCc
Q 002407 723 SRIRVVDGID 732 (927)
Q Consensus 723 g~I~VwD~~~ 732 (927)
+.+++|....
T Consensus 553 ~sv~l~kld~ 562 (577)
T KOG0642|consen 553 GSVRLWKLDV 562 (577)
T ss_pred ceeehhhccc
Confidence 9999998543
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.4e-13 Score=164.07 Aligned_cols=258 Identities=13% Similarity=0.201 Sum_probs=176.9
Q ss_pred eEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..|..|...|..++.+++. .+++|||.||+|+||+..+-.....
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~----------------------------------- 1086 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG----------------------------------- 1086 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-----------------------------------
Confidence 4567899999999988754 9999999999999999865321100
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-------E
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-------C 600 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-------~ 600 (927)
..+...++..-...+.++...+. ..+|.++.||.|++.+++... +
T Consensus 1087 ---------------------------s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1087 ---------------------------SARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred ---------------------------eeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence 00112233334567788888877 789999999999999998621 1
Q ss_pred EEEEe--cCC-ceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEe---ccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 601 LKIFS--HSD-YVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDW---NDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 601 ~~~~~--h~~-~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~---~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
..... ..+ .|..-+|...... .|+.+..-+.|..||++....... ...++.|++++.+|.+.++++|+..|.+
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceE
Confidence 11111 222 3344455543444 677888889999999988654433 3345789999999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC--cEEEEE-E-CCCcEEEEECCcceEEEEeecC-------
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS--SEVLVT-S-ADSRIRVVDGIDLVHKFKGFRN------- 742 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~--~~Llsg-s-~Dg~I~VwD~~~~~~~~~~~~~------- 742 (927)
.+||++=+..+.... ..+..+|+.+..+|-.+ ...+++ + ..+.|.+|+.............
T Consensus 1220 ~lWDLRF~~~i~sw~--------~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1220 VLWDLRFRVPILSWE--------HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred EEEEeecCceeeccc--------CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 999999887776654 24557777777766433 344444 4 5788999995433322222111
Q ss_pred ------------CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 743 ------------TNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 743 ------------~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.......++..-+.++++|+.|..|+.||......
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 11222344445567899999999999999987654
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8.3e-15 Score=160.22 Aligned_cols=305 Identities=20% Similarity=0.238 Sum_probs=218.9
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC--CCeecccccCCc
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE--PTSLSPKHLDNH 526 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd--~~~la~~~~~~~ 526 (927)
...|..|.|.|..|.|...|..|+||+.|..|.+||+..+..+..+ ..+|...++...|-|. ..-++..+.++.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc----ccccccchhhhhccCCCCCcCceeccccCc
Confidence 3567899999999999999999999999999999999988776665 5788888887777774 344555556665
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~ 604 (927)
+......... .-+....+..|.++|..++.-|+ ..|++++.|+.|.-+|+.+..+...+
T Consensus 211 vr~s~i~~t~-------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 211 VRVSEILETG-------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred eeeeeecccc-------------------ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 5322111100 00123345679999999999997 67999999999999999988765554
Q ss_pred e----cCC---ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-------Eec------cCCCcEEEEEECCCCCEE
Q 002407 605 S----HSD---YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-------DWN------DLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 605 ~----h~~---~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-------~~~------~~~~~V~sla~spdg~~l 664 (927)
. +.. ....|+.+|.+..+|++++.|..+++||.+.-... .+. ..+-.|++++|+.++.-|
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 3 333 57889999977789999999999999998653211 111 223479999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeeecccc---ccccc-ccCCC--CCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEE
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPIN---LQNKK-KRSHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHK 736 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~---~~~~~-~~~h~--~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~ 736 (927)
+++..|-.|+++.-..+.-....... ...+. .++|. ..|.++-|.--...++++|+.-|.|.||+.. .++..
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 99999999999954433221110000 00011 23443 3477777653334488999999999999943 34444
Q ss_pred EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 737 ~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+.+-.+ -|.|+.-+|--..||+.+-|..|+||--.+.+..
T Consensus 432 MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 432 MEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred hhcccc--eEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 444433 6888888999999999999999999988655443
No 179
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.9e-14 Score=148.70 Aligned_cols=209 Identities=14% Similarity=0.219 Sum_probs=165.2
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC------CCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcE
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS------SKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~------t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I 632 (927)
.+.+|.+.|.+|.|+.+ .+|++|+.|..++||++. +.+++.... |...|.|++|.. ...+|++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 45789999999999987 779999999999999986 346666665 668999999998 88899999999999
Q ss_pred EEEeCCCCcEEEeccCCC---cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 633 RIWSIPERQVVDWNDLHE---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 633 ~IWDl~t~~~v~~~~~~~---~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.+.|+.+.+.+..+.+.. .|..+..+|-.+.|++.+.++.|.+||.+.......... ..........+.|+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~------~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL------PANSGKNFYTAEFH 203 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee------ecCCCccceeeeec
Confidence 999999999988887775 899999999999999999999999999987652111111 02445667889999
Q ss_pred CCCCcEEEEEECCCcEEEEECCcceEEE------Eeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGIDLVHKF------KGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~~~~~~------~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|..+.+|++.+..+-+-+||.+.....+ ++.. .....+.+.|+|+|..|++--....-.+||+-+...
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 9999899999999999999965433221 1111 122346788999999988876666667788876443
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.5e-13 Score=159.55 Aligned_cols=305 Identities=16% Similarity=0.187 Sum_probs=207.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEc--cCCCCCeecccccCCceeeec
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN--GSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~--~spd~~~la~~~~~~~i~~~~ 531 (927)
+....-..+.|+|-...++++...-.|+|||.+.++....+...... ...|..+. ...|..++.++..++.+..++
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~--~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP--DTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC--CCccceeeeecccchhheeeeccCceEEEec
Confidence 33446677899998889999987889999999998877666433221 12232222 233566777888888887776
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCC
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSD 608 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~ 608 (927)
.......+. .++ .....+++ .+.+-.+.-.-+.|... ++|++++.-..|+|||....+++.-+. ...
T Consensus 1140 ~y~~~~~~~----eLV--Taw~~Ls~----~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1140 DYADKWKKP----ELV--TAWSSLSD----QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred ccccccCCc----eeE--Eeeccccc----cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 543221000 000 00001111 01111222244678766 889999889999999999988887776 556
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE----EEeccCCCc--EEEEEECCCCCE-EEEEECCCeEEEEECCCC
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV----VDWNDLHEM--VTAACYTPDGQG-ALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~----v~~~~~~~~--V~sla~spdg~~-l~tgs~Dg~I~IwDl~~~ 681 (927)
.|+++.-+-..++.|++|..||.|++||.+.... -.+..|... |..+.+.+.|-. |++|+.+|.|++||++..
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 7888877665789999999999999999876432 235556555 999999997755 999999999999999986
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEEee-----cCCcceEEEEEecCC
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFKGF-----RNTNSQISASLTANG 755 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~-----~~~~~v~sv~fspdg 755 (927)
.......+... ......++++..+++.+ .+++|+. +.|+||+.. +.+..++.. .....+.+++|+|-.
T Consensus 1290 ~~e~~~~iv~~----~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1290 SKETFLTIVAH----WEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cccccceeeec----cccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence 33333222110 11133599999999876 6777777 999999943 222222211 124567899999999
Q ss_pred CEEEEEECCCcEEEEECCCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
-+||+|+.|..|.||......
T Consensus 1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred HhhhhccCCceEEEeecCCcC
Confidence 999999999999999987654
No 181
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=7.4e-13 Score=154.56 Aligned_cols=281 Identities=17% Similarity=0.191 Sum_probs=191.4
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
...++.+|....+. ........-..|.-.++|.++||+++++|+|..||.|.||.--..+.
T Consensus 179 ~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~------------------ 239 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD------------------ 239 (792)
T ss_pred EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc------------------
Confidence 34455666655433 11111112245777899999999999999999999999996321100
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD 587 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D 587 (927)
.....+.++-|.+.|++++|+++ .+|++|+..
T Consensus 240 -----------------------------------------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 240 -----------------------------------------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred -----------------------------------------------ccccceEEEecccccceeEEecCCceEeecccc
Confidence 00123345669999999999999 789999999
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc------------CCCcEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND------------LHEMVTAA 655 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~------------~~~~V~sl 655 (927)
+.+.+|.+.+++....-....+|..+.++| ++.+.+....|..|.+....+........ ...-.+.+
T Consensus 273 ~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 273 GVLVLWQLETGKKQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred eEEEEEeecCCCcccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999999999999333334889999999999 99999999999999999876654332111 13456788
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc-c-CCCCCeEEEEEcCCCCcEEEEEE--------CC--C
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK-R-SHQRKITGFQFAPGSSSEVLVTS--------AD--S 723 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~-~-~h~~~Vtsl~fspdg~~~Llsgs--------~D--g 723 (927)
+++|.-+.++..+..|.|.+||+.+...+..+.+....... . .+.-.++.++.+-.|. ++++.- .| -
T Consensus 352 ~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs-~maT~E~~~d~~~~~~~e~ 430 (792)
T KOG1963|consen 352 SIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS-WMATLEARIDKFNFFDGEV 430 (792)
T ss_pred EEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce-EEEEeeeeehhhhccCceE
Confidence 99997778888889999999999988877666543322111 1 2334577777777754 566542 33 3
Q ss_pred cEEEEECCc------ceEEEEeecCCcceEEEEEe-cCCC-EEEEEECCCcEEEEECCCCCCc
Q 002407 724 RIRVVDGID------LVHKFKGFRNTNSQISASLT-ANGR-YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 724 ~I~VwD~~~------~~~~~~~~~~~~~v~sv~fs-pdg~-~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.+++|-... +..... ..|.......+|. +... .+++++.||.++||-+...+..
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~-~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKIN-NPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEe-cCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 467786322 222222 2233334444443 3333 7999999999999999776543
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.58 E-value=2.1e-13 Score=140.98 Aligned_cols=246 Identities=14% Similarity=0.221 Sum_probs=177.5
Q ss_pred ecCCCCEEEEEEcCCCC-----EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 453 QAHNGSIWSIKFSLDGR-----YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~-----~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..|.-+++.+.|.|+.. +|||.+ -.+|||.+...+....+..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~------------------------------- 139 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS------------------------------- 139 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhh-------------------------------
Confidence 46999999999999863 677765 3799999875322111100
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc----EE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT----CL 601 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~----~~ 601 (927)
+.. ...-..+..++++..|..- .+|.+++-|-+..|||++++. ..
T Consensus 140 ------------------------~L~-----~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 140 ------------------------VLN-----NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred ------------------------hhc-----cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 000 0011236778999999874 789999999999999999973 34
Q ss_pred EEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc---EEEeccC-CCcEEEEEECCC-CCEEEEEECC-CeEEE
Q 002407 602 KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ---VVDWNDL-HEMVTAACYTPD-GQGALVGSYK-GSCHL 675 (927)
Q Consensus 602 ~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~---~v~~~~~-~~~V~sla~spd-g~~l~tgs~D-g~I~I 675 (927)
+.+.|...|..|+|....-+.|++.+.||.||+||++..+ ++..-.. ......++|++. -+++++-..| ..|.|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 5566999999999998556789999999999999998754 2222222 467888999984 4567765555 45999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-----EEEeecCCcceEEEE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-----KFKGFRNTNSQISAS 750 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-----~~~~~~~~~~v~sv~ 750 (927)
.|++...... .+.+.|...|++++|.|.....|++++.|.++.|||...... .+........|..+.
T Consensus 271 LDiR~P~tpv--------a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~ 342 (364)
T KOG0290|consen 271 LDIRVPCTPV--------ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQ 342 (364)
T ss_pred EEecCCCcce--------ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeee
Confidence 9998654221 123689999999999999998999999999999999543322 222334567789999
Q ss_pred Eec-CCCEEEEEECCCcEEE
Q 002407 751 LTA-NGRYVVSASEDSYVYV 769 (927)
Q Consensus 751 fsp-dg~~Lasgs~Dg~I~I 769 (927)
|++ .+.+|+.+.. ..+.|
T Consensus 343 Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 343 WSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred ecccCCCEEEEEec-CeeeE
Confidence 995 4567777653 33443
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.57 E-value=1.1e-12 Score=147.22 Aligned_cols=279 Identities=14% Similarity=0.181 Sum_probs=174.8
Q ss_pred EEEEeCCCcEEEEeCCC-Cc--EEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCC-CCcE--EEeccCCCcEE
Q 002407 581 LLSSSMDKTVRLWHLSS-KT--CLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIP-ERQV--VDWNDLHEMVT 653 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t-~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~-t~~~--v~~~~~~~~V~ 653 (927)
+++...++.|.+|++.+ ++ .+..+.+......++++| ++++|++++ .++.|.+|++. ++++ +........+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 44557799999999964 33 455565667788999999 898887664 47889999997 3443 23333345678
Q ss_pred EEEECCCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 654 AACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 654 sla~spdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
.++|+|++++|++++. ++.|.+|++.+........ . ...+.....+++++|+++.++++...++.|.+||...
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~-~-----~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPI-Q-----IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCce-e-----eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 8999999999888764 7899999997432111100 0 0112234677889999986556667789999999643
Q ss_pred ceE-------EEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 733 LVH-------KFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 733 ~~~-------~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
... ..... .......+.|+|+|++|+++.. ++.|.+|+++..... . ....... .+
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~--~---~~~~~~~---------~~-- 220 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE--I---ECVQTLD---------MM-- 220 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC--E---EEEEEEe---------cC--
Confidence 111 01111 1233567899999999988876 899999999743110 0 0000000 00
Q ss_pred CCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc---cccc
Q 002407 805 PGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV---LTAR 881 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~---~~~~ 881 (927)
+.. ..++ .....+.|+|++++|+.+. ..+..+.+|+.+... ....
T Consensus 221 p~~----------------~~~~-------------~~~~~i~~~pdg~~lyv~~---~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 221 PAD----------------FSDT-------------RWAADIHITPDGRHLYACD---RTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred CCc----------------CCCC-------------ccceeEEECCCCCEEEEec---CCCCeEEEEEEeCCCCeEEEeE
Confidence 000 0000 0112355899999999974 345677778653210 1111
Q ss_pred cCCCceecccCCCCCcccCCCCCEEEEEcC-CCcEEEeec
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIVTAGL-RGEIRAYQN 920 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~-DG~IrvW~~ 920 (927)
+... ...+. .++++|||++|+++.. +++|.+|+.
T Consensus 269 ~~~~---~~~p~--~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 269 HQPT---ETQPR--GFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEec---cccCC--ceEECCCCCEEEEEEccCCcEEEEEE
Confidence 1110 00111 5789999999998876 899999984
No 184
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.1e-14 Score=158.34 Aligned_cols=244 Identities=21% Similarity=0.333 Sum_probs=163.9
Q ss_pred cceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc
Q 002407 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 444 ~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
.++-..++|.||+|.|+|++|+.+|.+||+|+.|-.+.|||.-..+.+..
T Consensus 38 rrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs------------------------------ 87 (758)
T KOG1310|consen 38 RRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS------------------------------ 87 (758)
T ss_pred hhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee------------------------------
Confidence 34455578999999999999999999999999999999999753322211
Q ss_pred CCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCC---
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSS--- 597 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t--- 597 (927)
.-.||...|.++.|-|. ..+++|..|+.|+|+|+..
T Consensus 88 --------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~ 129 (758)
T KOG1310|consen 88 --------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE 129 (758)
T ss_pred --------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence 22479999999999884 6789999999999999984
Q ss_pred -------CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-----------EeccCCCcEEEEEEC
Q 002407 598 -------KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-----------DWNDLHEMVTAACYT 658 (927)
Q Consensus 598 -------~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-----------~~~~~~~~V~sla~s 658 (927)
.+....+. |...|..|+..|...+.|.+++.||+|+-+|++....- .....--...++.++
T Consensus 130 ~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltis 209 (758)
T KOG1310|consen 130 GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTIS 209 (758)
T ss_pred cccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeec
Confidence 12233334 89999999999955599999999999999999873211 111111357789999
Q ss_pred CC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE-EcCCCCcEEEEEECCCcEEEEECCcceEE
Q 002407 659 PD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ-FAPGSSSEVLVTSADSRIRVVDGIDLVHK 736 (927)
Q Consensus 659 pd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~-fspdg~~~Llsgs~Dg~I~VwD~~~~~~~ 736 (927)
|. ..+|++|+.|-..++||.+.......-. ............|+. |+|.. + ...+|.+..
T Consensus 210 p~rp~~laVGgsdpfarLYD~Rr~lks~~s~----~~~~~~pp~~~~cv~yf~p~h---l--kn~~gn~~~--------- 271 (758)
T KOG1310|consen 210 PSRPYYLAVGGSDPFARLYDRRRVLKSFRSD----GTMNTCPPKDCRCVRYFSPGH---L--KNSQGNLDR--------- 271 (758)
T ss_pred CCCCceEEecCCCchhhhhhhhhhccCCCCC----ccccCCCCcccchhheecCcc---c--cCccccccc---------
Confidence 94 5689999999999999964322111000 000001112222332 44432 1 111111110
Q ss_pred EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 737 ~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
...-++-+.|+|+|.-|+..-..-.||++|+..++.+
T Consensus 272 -----~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 272 -----YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0112456789999877666655567999999876544
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.56 E-value=7.1e-14 Score=156.01 Aligned_cols=255 Identities=15% Similarity=0.186 Sum_probs=174.7
Q ss_pred cCceEEEEeccCc-ccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCcccc
Q 002407 428 QERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 428 ~~~~~V~i~~~~s-~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
...|.|-+|...- +.+....+ -.|. ....|+.+.|.| |...||.++.||.|+||.+..+.....
T Consensus 600 g~gG~iai~el~~PGrLPDgv~-p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~------------ 665 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVM-PGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN------------ 665 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccc-cccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc------------
Confidence 4568888997653 22222221 1111 456799999999 788999999999999999876532111
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLS 583 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~S 583 (927)
...+...+.+|...|+.|.|+|= +.|++
T Consensus 666 --------------------------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~ 695 (1012)
T KOG1445|consen 666 --------------------------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAV 695 (1012)
T ss_pred --------------------------------------------------cCCcceeeecccceEEEEEecchhhhHhhh
Confidence 12445567889999999999995 88999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccC--CCcEEEEEECC
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDL--HEMVTAACYTP 659 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~--~~~V~sla~sp 659 (927)
++.|-+|+|||+.+++....+. |++.|..++|+| +|+.+++.+.||+|++|..+.++.. ..-.. ...-..+.|.-
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac 774 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC 774 (1012)
T ss_pred hhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe
Confidence 9999999999999988766665 999999999999 9999999999999999998876532 21111 13345677888
Q ss_pred CCCEEEEEECCC----eEEEEECCCCee--eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--
Q 002407 660 DGQGALVGSYKG----SCHLYNTSENKL--QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-- 731 (927)
Q Consensus 660 dg~~l~tgs~Dg----~I~IwDl~~~~~--~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-- 731 (927)
+|.++++.+.|. .|.+||..+-.. +.+..+... ..+.--.+.+|...++++|-.|..|.+|...
T Consensus 775 dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDva--------ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 775 DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVA--------PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cCcEEEEecccccchhhhhhhhhhhccCCcceeeeeccc--------CccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 999988887764 588888765432 222111110 0111112456666688888899999999843
Q ss_pred -cceEEEEeecCCcceEEEEEecCC
Q 002407 732 -DLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 732 -~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
..+..+..+.....-..++|.+..
T Consensus 847 sPy~lpl~~f~sp~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 847 SPYLLPLAPFMSPVGHQGLAFLQKL 871 (1012)
T ss_pred CceeeecccccCCCcccceeeeccc
Confidence 223333333333333345555543
No 186
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=4.9e-14 Score=143.90 Aligned_cols=281 Identities=16% Similarity=0.210 Sum_probs=179.9
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.|++|.+.|+++.|..+++ |.+|..-|.|++|.+.+......+. ..+...+..+..-|.+ .+.+.+.+..+
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r----~~g~~~it~lq~~p~d-~l~tqgRd~~L--- 79 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR----LFGRLFITNLQSIPND-SLDTQGRDPLL--- 79 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh----hhccceeeceeecCCc-chhhcCCCceE---
Confidence 3568999999999988775 9999999999999998876554432 1122333333333332 22233333333
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE----------EEEEeCCC-cEEEEeCCCCc
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH----------LLSSSMDK-TVRLWHLSSKT 599 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~----------L~Sgs~Dg-tV~lWDl~t~~ 599 (927)
.+|.+...... .-|.-.++.+.|.+..+ ++.-+... .+.+-|.....
T Consensus 80 --------------------~lw~ia~s~~i--~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 80 --------------------ILWTIAYSAFI--SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred --------------------EEEEccCcceE--EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 45555553333 23445555666654211 11111100 02222222222
Q ss_pred EEEEEe-----cCCceEEEEEccCCCC--EEEEEECCCcEEEEeCCCCcEE-----------EeccCCCcEEEEEECCCC
Q 002407 600 CLKIFS-----HSDYVTCIQFNPVDDR--YFISGSLDAKVRIWSIPERQVV-----------DWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 600 ~~~~~~-----h~~~V~~v~fsp~dg~--~L~sgs~Dg~I~IWDl~t~~~v-----------~~~~~~~~V~sla~spdg 661 (927)
.+.... ..+.+.|..+...++. ++++|..+|.+.+||+.++..+ ....|..+|.++.|.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 222221 4456777765443333 4678889999999999986322 244567899999999876
Q ss_pred CEEEEEECCCeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEE
Q 002407 662 QGALVGSYKGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKF 737 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~ 737 (927)
..=++|+.+..+..|.+... .+.....+ .-....|..+.+-||++ .+++++.|+.||||.-++ .+..+
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~-------~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEI-------TLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceE-------EecCCCccceEEccCCc-EEeecccCCcEEEEEeccCCchhhh
Confidence 66778888888999988653 22221111 12344578888999987 899999999999998544 45555
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+.| ...|.+++|+|+..++|+++.|+.|-+|++
T Consensus 290 kyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 655 477999999999999999999999999986
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.7e-12 Score=131.31 Aligned_cols=280 Identities=16% Similarity=0.219 Sum_probs=187.6
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcc-----cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCK-----DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~-----~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
+.+......+++.|...|.|.++.+.+- +-......-..++|.++|+.|+|. ..+|++|+ ||.|+=|.+.+.
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 3344555667788888888888765431 111222233458999999999998 34788887 699999998654
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
....... .+|... .|.++-.-.-.
T Consensus 92 ~es~~~K-------------------------------------------------------~lwe~~-~P~~~~~~evP 115 (325)
T KOG0649|consen 92 EESLATK-------------------------------------------------------RLWEVK-IPMQVDAVEVP 115 (325)
T ss_pred hhhccch-------------------------------------------------------hhhhhc-CccccCcccCC
Confidence 3211000 000000 00000011234
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
.|++|...|. +-+++++.|+.++-||+++|+..+++. |+++|.++.--. ....+++|+.||+++|||.++++.+..+
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEe
Confidence 6888988887 778888899999999999999999998 999999999855 4557899999999999999999887755
Q ss_pred cCC-----------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 647 DLH-----------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 647 ~~~-----------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
... ..|.+++. +..++++|+ ...+.+|.++..+....+++ ..++..+.|..+ .
T Consensus 195 e~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpi----------pa~v~~v~F~~d---~ 258 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPI----------PARVHLVDFVDD---C 258 (325)
T ss_pred ccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEec----------ccceeEeeeecc---e
Confidence 432 24555554 455777775 45799999999988887654 355777778765 6
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC-CCEEEEEECCCcEEEE
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN-GRYVVSASEDSYVYVW 770 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd-g~~Lasgs~Dg~I~IW 770 (927)
+++++....|.-|.....+...... ......+..|+-. -++|-.++....+.|+
T Consensus 259 vl~~G~g~~v~~~~l~Gvl~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 259 VLIGGEGNHVQSYTLNGVLQANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccccceeeeeeccEEEEeccC-CccceeeecccCCceEEEEecccceeeeee
Confidence 8888888889999865444433222 1222344444332 2445555666666665
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.53 E-value=1.2e-12 Score=137.02 Aligned_cols=205 Identities=18% Similarity=0.260 Sum_probs=151.3
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCC--------------cEEEEEecCCceEEEEEc-------cCCCCEEEEEE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--------------TCLKIFSHSDYVTCIQFN-------PVDDRYFISGS 627 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--------------~~~~~~~h~~~V~~v~fs-------p~dg~~L~sgs 627 (927)
...+.|+|| ..|++-+.|..+.+|++... .....+.....|..-+|- | +.+++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeeecc
Confidence 345789999 67999999999999998621 111122245567777774 5 678999999
Q ss_pred CCCcEEEEeCCCCcEEEe---ccCCC---cEEEEEECCCCCEEEEEECCCeEEEEEC-CCCeeeeecccccccccccCCC
Q 002407 628 LDAKVRIWSIPERQVVDW---NDLHE---MVTAACYTPDGQGALVGSYKGSCHLYNT-SENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 628 ~Dg~I~IWDl~t~~~v~~---~~~~~---~V~sla~spdg~~l~tgs~Dg~I~IwDl-~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
.+.-|++||.-++++... .++.+ ...+++|+|||..|++|. ...|++||+ +.+........ ..+.+.+..
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t--~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT--VTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh--hhccccccc
Confidence 999999999999987643 33333 457899999999998875 678999999 55554333321 112234567
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCc
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRP 778 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~ 778 (927)
+.|.+++|+|.....+++++....+-||.-......+..+.+.+.|+.++|.++|+.|.+|.. |-.|..||++....+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 789999999988878999998888777653333333333456778999999999999999874 778999999875443
No 189
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=6.1e-13 Score=139.39 Aligned_cols=316 Identities=15% Similarity=0.204 Sum_probs=187.6
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCC-CEEEEEECCCcEEEEeCCCCcEEE
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg-~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
.|.-|.|..+ -.|.....|+.|.+|++...+-...+. ....+..+.|+| ++ .+|.+...+-.|.+|.+.+.+...
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEeccceeEE
Confidence 3555677766 335566788999999999888777776 778899999999 77 556677778999999999988877
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
....+..+..++|+|||++.+..+.......+++...+.- .-.+.+...+-..+++.|+|+|. .
T Consensus 129 ~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W------~ll~~f~~dT~DltgieWsPdg~-~--------- 192 (447)
T KOG4497|consen 129 LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW------ILLKEFKLDTIDLTGIEWSPDGN-W--------- 192 (447)
T ss_pred ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH------HHHHhcCCCcccccCceECCCCc-E---------
Confidence 6666777899999999999988876533222222211100 00111234556788999999986 2
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc------c-------------cccc
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR------S-------------KSIT 785 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~------~-------------~~~~ 785 (927)
+.|||.--....+. ......+..+.|+|.+++|+.|+.|+.++|-+--+-+.-.. . ....
T Consensus 193 laVwd~~Leykv~a-Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 193 LAVWDNVLEYKVYA-YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred EEEecchhhheeee-eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 55777432222222 22334577899999999999999999998755433211100 0 0011
Q ss_pred eeeeeeeecCCCeEEEEecCCceeEEeecCCce--eeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc
Q 002407 786 VTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYL--DEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF 863 (927)
Q Consensus 786 ~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~ 863 (927)
....+..|.+.+.- +-.|.....++..+...+ ..+......+.|. ..+..++||+|+.|+|+-++.
T Consensus 272 l~~~cLsf~p~~~~-a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk---------~g~g~lafs~Ds~y~aTrnd~-- 339 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLE-AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK---------CGAGKLAFSCDSTYAATRNDK-- 339 (447)
T ss_pred hcccccccCCCccc-cCccccchhhhhhhhcceeeecccCCCCCCCcc---------cccceeeecCCceEEeeecCC--
Confidence 11222222222221 222322222222221111 1111112222222 233446899999999995521
Q ss_pred cCccccccCchhhcccc--ccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 864 FDRISATWPEEKLVLTA--RNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 864 ~d~~v~~W~~e~l~~~~--~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
....+=+|+.+++.... -...|+. +..|.|....||.....-++-+|--.|
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQk~pir--------af~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQKHPIR--------AFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred CCceEEEEechhhhhhhhhhhcccee--------EEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 23556688887653311 1122332 467888777776665555677776544
No 190
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.52 E-value=4.5e-13 Score=138.34 Aligned_cols=266 Identities=18% Similarity=0.253 Sum_probs=185.3
Q ss_pred eeeEeecCCCCEEEEEEcC-CCCEEEEEeCC-------CcEEEEecCcCcccc-----eeecccccCccccEEEEccCCC
Q 002407 448 KCQEIQAHNGSIWSIKFSL-DGRYLASAGED-------CVIHVWQVVESERKG-----ELLEKQEDGHLNMLLLANGSPE 514 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSp-dG~~LaSgs~D-------gtVrVWdv~~~~~~~-----~l~~~~~~~~~~~v~~v~~spd 514 (927)
..+.|..|.+.||.|+-+| +.+.|+|+-.+ ..+-||.+.+..... +............+.++.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3466788999999999999 55677776442 247899987654331 1112223345567889999999
Q ss_pred CCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEE
Q 002407 515 PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRL 592 (927)
Q Consensus 515 ~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~l 592 (927)
+..+++-. +..+..+......... ..+ +...-.+|....+.-+|+|. +..+....|++++.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~v----aev------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIV----AEV------------LSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchh----eee------------cccccccccceecccccCCCCccceEEEeCCCcEEE
Confidence 88887764 4444333222211100 000 00011236677888899994 66677778999999
Q ss_pred EeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-E-EEeccCCCcEEEEEECC-CCCEEEEE
Q 002407 593 WHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-V-VDWNDLHEMVTAACYTP-DGQGALVG 667 (927)
Q Consensus 593 WDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~-v~~~~~~~~V~sla~sp-dg~~l~tg 667 (927)
||+++..+...+. |...|..+.|+|+...+|++|+.||.|+|||.+..+ . .....|...|.++-|+| ..++|++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999988887776 999999999999667789999999999999998754 3 34566778999999999 45788899
Q ss_pred ECCCeEEEEECCCCeeeeeccc--------------------ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 668 SYKGSCHLYNTSENKLQQKSPI--------------------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i--------------------~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
+.|..|.+|....-.....++. .........|...|++++|+...+..+++-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 9999999998654221111100 00011234688899999999999988888899999988
Q ss_pred EEC
Q 002407 728 VDG 730 (927)
Q Consensus 728 wD~ 730 (927)
=..
T Consensus 358 s~V 360 (370)
T KOG1007|consen 358 SSV 360 (370)
T ss_pred ecC
Confidence 653
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.8e-11 Score=129.33 Aligned_cols=279 Identities=16% Similarity=0.203 Sum_probs=183.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
...|..+.|..|...|..|+.|| -++|.......... .......|.-+-|+..-..++.......+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-----~~~~~~~IvEmLFSSSLvaiV~~~qpr~L-------- 70 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-----KDTEGVSIVEMLFSSSLVAIVSIKQPRKL-------- 70 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-----ccCCCeEEEEeecccceeEEEecCCCceE--------
Confidence 44677788999999999999997 57777765443111 11122333344444443333332111111
Q ss_pred ccccccccCcccccceEeecCC-CceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCce
Q 002407 536 INRKSLSLDHMVVPETVFALSD-KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYV 610 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V 610 (927)
++..... ..++.+. ....|.++.+..+ +|+++-.+. |+|||+.+.+.++++. +...+
T Consensus 71 ---------------kv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 71 ---------------KVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred ---------------EEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEccc-EEEEecccceeehhhhccCCCccce
Confidence 1222211 2222222 4567888888654 455555544 9999999999998886 44456
Q ss_pred EEEEEccCCCCEEEEE--ECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCe-EEEEECCCCeeeee
Q 002407 611 TCIQFNPVDDRYFISG--SLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNTSENKLQQK 686 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sg--s~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~-I~IwDl~~~~~~~~ 686 (927)
.++.+++ .+.+|+-= ...|.|.|||+.+-+.+. +..|++.+.+++|+++|.+||+++..|+ ||+|.+.+++.+.+
T Consensus 133 ~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 133 CALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred EeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 6666666 56677643 235889999999887765 4567789999999999999999999998 79999999998887
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--------------------------------
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-------------------------------- 734 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-------------------------------- 734 (927)
+.- -.....|++++|+|+++ +|.+.+..++|+||.+.+..
T Consensus 212 FRR-------G~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~ 283 (391)
T KOG2110|consen 212 FRR-------GTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV 283 (391)
T ss_pred eeC-------CceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence 642 12356799999999987 88889999999999721100
Q ss_pred ----EEEEee-cCCcce-EEEEEe--cCCCEEEEEECCCcEEEEECCCC
Q 002407 735 ----HKFKGF-RNTNSQ-ISASLT--ANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 735 ----~~~~~~-~~~~~v-~sv~fs--pdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+.|... ...... ..+.+. +...++..++.||.++.|.+...
T Consensus 284 ~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 284 LDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 001000 001111 223333 46788999999999999999763
No 192
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.50 E-value=5.4e-13 Score=147.10 Aligned_cols=188 Identities=16% Similarity=0.302 Sum_probs=143.6
Q ss_pred cCCCceEEEccCCCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcE
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I 632 (927)
..++.......|.+.|.+-.|+|++ -|++++.||.|++|.-. |....++ ....+|.|++|.|...+.+++.+ +.+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~ 168 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHI 168 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecC--CeE
Confidence 3445566678899999999999994 59999999999999854 3332222 36788999999994444444433 456
Q ss_pred EEEeCC-CCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 633 RIWSIP-ERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 633 ~IWDl~-t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
.|=.+. +.++++|..|.+.|.++.|++....+++|+.|-..+|||-....+... ..|..+|++++|.|+
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S----------~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS----------AAEEYAITSVAFNPE 238 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC----------Chhccceeeeeeccc
Confidence 665554 357789999999999999999999999999999999999875544332 478899999999998
Q ss_pred CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 712 SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
. .++.++.. ++| +. ....+.|..++|++||..+++|+..|.+.+
T Consensus 239 -~-~~~v~S~n-t~R----------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 239 -K-DYLLWSYN-TAR----------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -c-ceeeeeee-eee----------ec-CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 3 45555432 232 22 235678999999999999999999888654
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.50 E-value=3.2e-13 Score=138.02 Aligned_cols=292 Identities=11% Similarity=0.157 Sum_probs=191.1
Q ss_pred CceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
.|...+++|.+.|+++.|-.+++|++|..-|.|++|++.+...+..+. +...|+.++-.| + ..+.+-+.|..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence 567788899999999999999999999999999999999998887776 788999999998 4 668899999999999
Q ss_pred eCCCCcEEEeccCCCcEEEEEECC-----CCC----EEEEEECCC-eEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTP-----DGQ----GALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~sp-----dg~----~l~tgs~Dg-~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
++.....+.... -.++++.|.+ .++ .++.-+... .+++-|..... ++...........+.+++
T Consensus 83 ~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-----qv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 83 TIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-----QVQIADDSERSKLGSVMC 155 (323)
T ss_pred EccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-----eeEccCchhccccCceee
Confidence 998866554322 2233333332 221 111111100 02222221111 111122222455667777
Q ss_pred EEEcCC-C-CcEEEEEECCCcEEEEECCcce----------EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 706 FQFAPG-S-SSEVLVTSADSRIRVVDGIDLV----------HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 706 l~fspd-g-~~~Llsgs~Dg~I~VwD~~~~~----------~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..+.-. + ..++++|.++|.+.+||..... .......+..++.++.+.+.-..=++|+.+-.+..|.+.
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLN 235 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeec
Confidence 764332 2 2356777889999999965431 122233456778888888766666777778888888886
Q ss_pred CCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCC
Q 002407 774 AESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNG 853 (927)
Q Consensus 774 s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~ 853 (927)
......... .... +- + .....+..-||++
T Consensus 236 ~s~gslq~~---~e~~------------lk----------------------n--------------pGv~gvrIRpD~K 264 (323)
T KOG0322|consen 236 HSTGSLQIR---KEIT------------LK----------------------N--------------PGVSGVRIRPDGK 264 (323)
T ss_pred cccCccccc---ceEE------------ec----------------------C--------------CCccceEEccCCc
Confidence 542111110 0000 00 0 1111223579999
Q ss_pred eEEEeccccccCccccccCchh---hccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecC
Q 002407 854 TISSATNSYFFDRISATWPEEK---LVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 854 ~Lasas~~~~~d~~v~~W~~e~---l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~ 921 (927)
.+|+|+ +|+.++++.-.+ +..+..|...+. +++|+|+..++|.|+.|++|-+|.-|
T Consensus 265 IlATAG----WD~RiRVyswrtl~pLAVLkyHsagvn--------~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 265 ILATAG----WDHRIRVYSWRTLNPLAVLKYHSAGVN--------AVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred EEeecc----cCCcEEEEEeccCCchhhhhhhhccee--------EEEeCCCCchhhhccCCceEEeeecC
Confidence 999999 998888766543 333556665554 57999999999999999999999866
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.8e-13 Score=146.84 Aligned_cols=190 Identities=22% Similarity=0.324 Sum_probs=146.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccccc
Q 002407 460 WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRK 539 (927)
Q Consensus 460 ~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~ 539 (927)
.+|+|+++|..|++|+.||++|||++.....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l----------------------------------------------- 180 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL----------------------------------------------- 180 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-----------------------------------------------
Confidence 689999999999999999999999976543221
Q ss_pred ccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEE
Q 002407 540 SLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQF 615 (927)
Q Consensus 540 ~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~f 615 (927)
.+..|.+.|.+|.|+|| ..|++-+.| ..+||++.++.++.... .......+.|
T Consensus 181 ----------------------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF 237 (398)
T KOG0771|consen 181 ----------------------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRF 237 (398)
T ss_pred ----------------------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhcee
Confidence 23458899999999999 578899999 99999999997766554 3345667778
Q ss_pred ccCCC---CEEEEE--ECCCcEEEEeCCCC------cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 616 NPVDD---RYFISG--SLDAKVRIWSIPER------QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 616 sp~dg---~~L~sg--s~Dg~I~IWDl~t~------~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+. ++ .+++.+ ..-+.|+.|++... +..+.......|++++.+++|++++.|+.+|.|-||+..+.+..
T Consensus 238 ~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 238 SV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRL 316 (398)
T ss_pred cc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeee
Confidence 76 54 333332 33455777665331 22233344568999999999999999999999999999887777
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
+..+ +.|...|+.+.|+|+.. .++..+.+..+.|..
T Consensus 317 ~~vk--------~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 317 QYVK--------EAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTK 352 (398)
T ss_pred Eeeh--------hhheeeeeeEEEcCCcC-cccccccCCceeEEE
Confidence 6543 68999999999999876 678888888888765
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.50 E-value=2e-12 Score=139.29 Aligned_cols=152 Identities=20% Similarity=0.373 Sum_probs=124.5
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcE------E---EEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTC------L---KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~------~---~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+|..+.|.++ ++|+||+.|..|+||.+..... + ..+. |...|+++.|+| ++++|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 457889999887 5899999999999998864322 2 2222 999999999999 9999999999999999
Q ss_pred EeCC--------C-----C---cE-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 635 WSIP--------E-----R---QV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 635 WDl~--------t-----~---~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
|... + . .+ .....|...|..++|+|++.++++++.|..+++||+..+++.... .
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~---------~ 162 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL---------D 162 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec---------c
Confidence 9765 2 1 01 123346678999999999999999999999999999999988765 4
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|...+..++|.|-++ ++++-+.|...+++.
T Consensus 163 dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFS 193 (434)
T ss_pred ccccccceeecchhhh-hhhhhccCcccceee
Confidence 8999999999999876 788878887666655
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.6e-11 Score=124.34 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=173.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
..|.+-+++|.++||+.|..+|.|.|..+.+-..... .
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa------------------~------------------------ 48 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA------------------E------------------------ 48 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc------------------C------------------------
Confidence 3567778999999999999999999998764311000 0
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcE-------EEEE-e-cC
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC-------LKIF-S-HS 607 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~-------~~~~-~-h~ 607 (927)
.....++..+++|.++|+.++|+ +.+|++++ ||.|+-|....... .... . |.
T Consensus 49 -----------------~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 49 -----------------PPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred -----------------CCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 00123455668999999999998 45566655 49999997653221 1111 1 22
Q ss_pred -----CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 608 -----DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 608 -----~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
..|+++-..| ..+-++.++.|+.++-||+++|++... ..|.+.|.++.--.....+++|+.||++++||++++
T Consensus 110 ~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 110 DAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred CcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc
Confidence 4688999999 555566666899999999999998875 456678999888565667999999999999999999
Q ss_pred eeeeecccccccccccCC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEE
Q 002407 682 KLQQKSPINLQNKKKRSH-QRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYV 758 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h-~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~L 758 (927)
+.+..+...-.....+.| ...|.+++.+.+ .++++....+.+|+++. ..+.|.. ...+..+.|-. +.+
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~ed----WlvCGgGp~lslwhLrsse~t~vfpi---pa~v~~v~F~~--d~v 259 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNED----WLVCGGGPKLSLWHLRSSESTCVFPI---PARVHLVDFVD--DCV 259 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCc----eEEecCCCceeEEeccCCCceEEEec---ccceeEeeeec--ceE
Confidence 988876543332222333 345777776653 44556667899999654 4444443 34566677754 468
Q ss_pred EEEECCCcEEEEECCC
Q 002407 759 VSASEDSYVYVWKYEA 774 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s 774 (927)
++++....|.-|.+..
T Consensus 260 l~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLNG 275 (325)
T ss_pred EEeccccceeeeeecc
Confidence 8888888899998864
No 197
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=6.7e-12 Score=139.93 Aligned_cols=286 Identities=17% Similarity=0.156 Sum_probs=198.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
+|.| .|...-+.|..+|||+|| |||-.--.|++||+.+.....+- .-....|.+.-.+.|-..++....+..|
T Consensus 45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-----hlDae~V~feiLsDD~SK~v~L~~DR~I 118 (703)
T KOG2321|consen 45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-----HLDAEVVDFEILSDDYSKSVFLQNDRTI 118 (703)
T ss_pred HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-----cccccceeEEEeccchhhheEeecCcee
Confidence 3443 488889999999999986 56667889999999876544331 1112233333334443333333333333
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
.+......- ..++ -...-.+|+++. .--|+.++....|+-++++.|..+..|.
T Consensus 119 efHak~G~h------------------------y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 119 EFHAKYGRH------------------------YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred eehhhcCee------------------------eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 322211100 0000 111224455553 3346666666789999999999999988
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-------C-----cEEEEEECCCCCEEEEEECCCeE
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-------E-----MVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-------~-----~V~sla~spdg~~l~tgs~Dg~I 673 (927)
....+++|..++ ...+|++|+.+|.|-.||.++...+..+... . .|+++.|+.+|-.+++|+.+|.+
T Consensus 174 ~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 174 DSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 558999999999 7778999999999999999987665433322 2 49999999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.|||++..+.+.... .....+|..+.|.+.+..-.+++.....++|||-.+... +........+..+|+-|
T Consensus 253 ~iyDLRa~~pl~~kd--------h~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-~asiEpt~~lND~C~~p 323 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKD--------HGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-MASIEPTSDLNDFCFVP 323 (703)
T ss_pred EEEEcccCCceeecc--------cCCccceeeecccccCCCceEEecchHHhhhcccccCCc-eeeccccCCcCceeeec
Confidence 999999988765532 345567899999887554566677778899999543322 22333456688899999
Q ss_pred CCCEEEEEECCCcEEEEECCCC
Q 002407 754 NGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 754 dg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++-+++++-+++.+..|=+..-
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999998888877653
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.45 E-value=8.3e-12 Score=131.05 Aligned_cols=248 Identities=17% Similarity=0.266 Sum_probs=178.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
-..+|+|.+|++|+..+|.+-....|.||.....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------------------------------------- 44 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------------------------------------- 44 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC--------------------------------------------
Confidence 357899999999999999999999999998643320
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeC-CCCcE---EEEEecCCc
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL-SSKTC---LKIFSHSDY 609 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl-~t~~~---~~~~~h~~~ 609 (927)
-++.+++..|...|+.++|.|. ++|++++.|..-+||.. ..++- +..+.+...
T Consensus 45 ----------------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 45 ----------------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRA 102 (361)
T ss_pred ----------------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccc
Confidence 1456678889999999999998 89999999999999998 44332 334459999
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-----EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-----~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+++|.|+| .++.|++|+.-..|.||-++...-- -...+...|+++.|+|++-+|++|+.|+.+++|..--....
T Consensus 103 At~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vd 181 (361)
T KOG1523|consen 103 ATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVD 181 (361)
T ss_pred eeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccc
Confidence 99999999 9999999999999999987665421 12334578999999999999999999999999975321111
Q ss_pred ee---------cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEeecCCcceEEEEEecC
Q 002407 685 QK---------SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 685 ~~---------~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspd 754 (927)
.. +++...........+.|..+.|+|+|. .|+-.+.|+.+.+-|.....+ .........+..++.|-.+
T Consensus 182 ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 182 EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 10 011000111125667899999999987 799999999999998543321 1111112245566666544
Q ss_pred CCEEEEEECCCcEEEEE
Q 002407 755 GRYVVSASEDSYVYVWK 771 (927)
Q Consensus 755 g~~Lasgs~Dg~I~IWd 771 (927)
. .++.++.|..=.++.
T Consensus 261 ~-~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 261 N-SVVAAGYDCGPVLFV 276 (361)
T ss_pred C-ceeecCCCCCceEEE
Confidence 3 455555664444443
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.3e-11 Score=128.20 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=184.4
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
++.+..+..|++|+++++....+. ..-...|+||+|-|. ++-|+.|+.. -|.||.....-.......
T Consensus 113 fava~nddvVriy~ksst~pt~Lk-----s~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~------ 180 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSSTCPTKLK-----SVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIR------ 180 (445)
T ss_pred hhhhccCcEEEEeccCCCCCceec-----chhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccc------
Confidence 466788889999999986554443 234567999999995 4577777754 599998753221111000
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L 581 (927)
........+....|| ..|+.|.|.+| ..|
T Consensus 181 -------------------------------------------------~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l 210 (445)
T KOG2139|consen 181 -------------------------------------------------MMSTHHLQVLQDPGH-NPVTSMQWNEDGTIL 210 (445)
T ss_pred -------------------------------------------------cccccchhheeCCCC-ceeeEEEEcCCCCEE
Confidence 000001122334466 78999999999 567
Q ss_pred EEEeC-CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeC-CCCcEEEeccCCCcEEEEEEC
Q 002407 582 LSSSM-DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-PERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 582 ~Sgs~-DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl-~t~~~v~~~~~~~~V~sla~s 658 (927)
++++. |..|.|||+.++.++.... ..+.++-+.|+| |+.+|+++..|+..++|.. ++-....+.-..+.|...+|+
T Consensus 211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWs 289 (445)
T KOG2139|consen 211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWS 289 (445)
T ss_pred eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeec
Confidence 77775 5679999999998887764 667889999999 9999999999999999954 444555677777899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCe--e---------eeeccccccccc----ccCCCCCeEEEEEcCCCCcEEEEEECC-
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENK--L---------QQKSPINLQNKK----KRSHQRKITGFQFAPGSSSEVLVTSAD- 722 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~--~---------~~~~~i~~~~~~----~~~h~~~Vtsl~fspdg~~~Llsgs~D- 722 (927)
|+|.+|+.... |.-++|.+.-.. . ......+++... ..-..+.+.+++|.|.|. +|++.-..
T Consensus 290 pcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~ 367 (445)
T KOG2139|consen 290 PCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQ 367 (445)
T ss_pred CCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCC
Confidence 99998777653 334445432110 0 000111111100 122356789999999998 56665443
Q ss_pred -------CcEEEEECCcce---EEEEeecCCcceEEEEEec---CCCEEEEEECCCcEEEEECC
Q 002407 723 -------SRIRVVDGIDLV---HKFKGFRNTNSQISASLTA---NGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 723 -------g~I~VwD~~~~~---~~~~~~~~~~~v~sv~fsp---dg~~Lasgs~Dg~I~IWdl~ 773 (927)
..|.+||.+... ..+-+.........++|+| ++.+|..+=..|.|.-|.+.
T Consensus 368 ~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 368 SFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred chhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 236667754321 1112222222334456665 56777777778888877764
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=9.6e-12 Score=144.80 Aligned_cols=230 Identities=14% Similarity=0.110 Sum_probs=152.6
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNML 506 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v 506 (927)
+..|++|+...... +.+..|...|..++|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~------~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQ------FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------- 242 (429)
T ss_pred eEEEEEECCCCCCc------eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------
Confidence 35778887654332 4456788899999999999999988754 369999986653110
Q ss_pred EEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEE-
Q 002407 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS- 584 (927)
Q Consensus 507 ~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sg- 584 (927)
+..+.+|. ..++|+|+ .+|+.+
T Consensus 243 -----------------------------------------------------l~~~~g~~---~~~~wSPDG~~La~~~ 266 (429)
T PRK01742 243 -----------------------------------------------------VASFRGHN---GAPAFSPDGSRLAFAS 266 (429)
T ss_pred -----------------------------------------------------EecCCCcc---CceeECCCCCEEEEEE
Confidence 11122232 25789999 456655
Q ss_pred eCCCcEEE--EeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCC--CcEEEeccCCCcEEEEEECC
Q 002407 585 SMDKTVRL--WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE--RQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 585 s~DgtV~l--WDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t--~~~v~~~~~~~~V~sla~sp 659 (927)
+.++.+.| ||+.+++......+...+..+.|+| +++.|+..+ .++...||++.. +.. ....+.. ..+.|+|
T Consensus 267 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~~--~~~~~Sp 342 (429)
T PRK01742 267 SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGRG--YSAQISA 342 (429)
T ss_pred ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCe-EEecCCC--CCccCCC
Confidence 46776554 5777777655555777788999999 888776555 578888887643 332 2223332 4578999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC----CcceE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG----IDLVH 735 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~----~~~~~ 735 (927)
||++|+..+.++ +.+||+.++....... . .....+.|+|++. +|+.++.++.+.+|+. .....
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---------~--~~~~~~~~sPdG~-~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEVLSS---------T--FLDESPSISPNGI-MIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEEecC---------C--CCCCCceECCCCC-EEEEEEcCCCceEEEEEECCCCceE
Confidence 999998887755 5569998876543211 1 1234578999987 7888888888887763 23344
Q ss_pred EEEeecCCcceEEEEEecC
Q 002407 736 KFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspd 754 (927)
.+.. +...+...+|+|-
T Consensus 410 ~l~~--~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPG--SDGQVKFPAWSPY 426 (429)
T ss_pred EccC--CCCCCCCcccCCC
Confidence 4433 3455667788873
No 201
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=5.1e-12 Score=130.68 Aligned_cols=203 Identities=21% Similarity=0.293 Sum_probs=151.2
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc-cceeecccccCccccEEEEccCC--CCCeecccccCCceeee
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER-KGELLEKQEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~-~~~l~~~~~~~~~~~v~~v~~sp--d~~~la~~~~~~~i~~~ 530 (927)
.|-+.|.||.|.|++..||+-. |..|.+|++.++.. ..++.......+....+.-+|+| ++..+++..... +..+
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t-l~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST-LQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc-EEEE
Confidence 5667999999999999999886 88999999998876 55555444455667778888998 577776654433 2111
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCC-CcEEEEEe-c
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS-KTCLKIFS-H 606 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h 606 (927)
.... ..+....-..|...|..+.|.|+ ..|++|+.||.|+|||.+. ..+++.+. |
T Consensus 199 D~RT---------------------~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~H 257 (370)
T KOG1007|consen 199 DLRT---------------------MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGH 257 (370)
T ss_pred Eccc---------------------hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCC
Confidence 1100 01122233568889999999998 5699999999999999985 45666665 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCC------------------------------CcEEEeccCCCcEEEEE
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------------------------------RQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t------------------------------~~~v~~~~~~~~V~sla 656 (927)
...|+++.|+|..+.+|++++.|..|.+|.... +.+..+..|++.|.+++
T Consensus 258 sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~a 337 (370)
T KOG1007|consen 258 SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALA 337 (370)
T ss_pred ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEe
Confidence 999999999998899999999999999997521 12223456778999999
Q ss_pred ECCCCCE-EEEEECCCeEEEEECC
Q 002407 657 YTPDGQG-ALVGSYKGSCHLYNTS 679 (927)
Q Consensus 657 ~spdg~~-l~tgs~Dg~I~IwDl~ 679 (927)
|+.-..+ |++-+.||.+.|=.+.
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCC
Confidence 9986554 6667899998876543
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.43 E-value=1.8e-12 Score=143.12 Aligned_cols=205 Identities=22% Similarity=0.282 Sum_probs=148.3
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
.++..+.+|++.+.++..+ . .+.+.+|.+.|.|-.|+|||.-|+|+|+||.|++|.-... ...+ ....
T Consensus 77 ~~~i~s~DGkf~il~k~~r-V-----E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRSt-----l~Q~ 144 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSAR-V-----ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRST-----VVQN 144 (737)
T ss_pred eEEEEcCCceEEEecccch-h-----hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHH-----Hhhc
Confidence 3455567778887775433 1 2445799999999999999999999999999999984321 1111 1234
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL 581 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L 581 (927)
...|.+++|.|+...+..+..+... .+... ....+...+.|.+-|.++.|++. +.+
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~g~h~~-IKpL~----------------------~n~k~i~WkAHDGiiL~~~W~~~s~lI 201 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQGGHIS-IKPLA----------------------ANSKIIRWRAHDGLVLSLSWSTQSNII 201 (737)
T ss_pred CceeEEEEECCCCCceEEecCCeEE-Eeecc----------------------cccceeEEeccCcEEEEeecCccccce
Confidence 4678999999997766665333322 11110 11234467899999999999998 889
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
++|+.|-..+|||-........-.|..+|++++|+| + ..++.++. .++++ .....+.|..++|++||
T Consensus 202 ~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R~----------~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 202 ASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNP-E-KDYLLWSY-NTARF----------SSPRVGSIFNLSWSADG 268 (737)
T ss_pred eecCCceeEEeecccCcccccCChhccceeeeeecc-c-cceeeeee-eeeee----------cCCCccceEEEEEcCCC
Confidence 999999999999976544444445999999999999 6 55665554 34441 11223678999999999
Q ss_pred CEEEEEECCCeEEE
Q 002407 662 QGALVGSYKGSCHL 675 (927)
Q Consensus 662 ~~l~tgs~Dg~I~I 675 (927)
..+++|+..|.+.+
T Consensus 269 TQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 269 TQATCGTSTGQLIV 282 (737)
T ss_pred ceeeccccCceEEE
Confidence 99999999998655
No 203
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.43 E-value=2.8e-11 Score=141.48 Aligned_cols=270 Identities=16% Similarity=0.194 Sum_probs=183.0
Q ss_pred CcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-------EEeccCCCcEEEEEECC
Q 002407 588 KTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-------VDWNDLHEMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-------v~~~~~~~~V~sla~sp 659 (927)
+.+.||++... .+...+.-...|+|+.|+|.+.++++.|+.+|.|.+||++.+.. .....|...++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 37999999877 66667778899999999999999999999999999999987654 12445668999999977
Q ss_pred CCCE--EEEEECCCeEEEEECCCCeeeeec-cccccc--ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC---C
Q 002407 660 DGQG--ALVGSYKGSCHLYNTSENKLQQKS-PINLQN--KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG---I 731 (927)
Q Consensus 660 dg~~--l~tgs~Dg~I~IwDl~~~~~~~~~-~i~~~~--~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~---~ 731 (927)
+..- |++++.||.|..|+++.-...... ...... .........++++.|.+..++.+++|+.+|.|..-+. .
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5444 999999999999988765442221 111111 1112345578999999999999999999999988441 1
Q ss_pred cce-EEEE----eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCC
Q 002407 732 DLV-HKFK----GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPG 806 (927)
Q Consensus 732 ~~~-~~~~----~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g 806 (927)
... ..++ ...+.++|..+.++|=+..++..+.|.+|+||.......|...- ....+..
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~----------~~~~~~v------- 444 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL----------DSSPDYV------- 444 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhh----------hhcccee-------
Confidence 111 1122 23467889999999988766666669999999987422221100 0000001
Q ss_pred ceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCc
Q 002407 807 VGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPR 886 (927)
Q Consensus 807 ~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v 886 (927)
+.++|||---.++... ..++.+.+|+... .+..|+
T Consensus 445 -------------------------------------~~vaWSptrpavF~~~---d~~G~l~iWDLl~-----~~~~Pv 479 (555)
T KOG1587|consen 445 -------------------------------------TDVAWSPTRPAVFATV---DGDGNLDIWDLLQ-----DDEEPV 479 (555)
T ss_pred -------------------------------------eeeEEcCcCceEEEEE---cCCCceehhhhhc-----cccCCc
Confidence 1123555443333332 2567888898642 233444
Q ss_pred eecccCCCC--CcccCCCCCEEEEEcCCCcEEEee
Q 002407 887 TSLDISNGI--SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 887 ~s~~~~~~~--~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
....++... ...|++.|++|+.|+..|+|.+|.
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 444333111 478888999999999999999998
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-11 Score=134.32 Aligned_cols=198 Identities=19% Similarity=0.260 Sum_probs=151.7
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~- 647 (927)
..++|+.+ ..|++++.||++|||+......+... .|...|.++.|+| |+++|++-+.| ..+||++.++..+.+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67899998 88999999999999997766655544 4999999999999 99999999999 99999999997666544
Q ss_pred --CCCcEEEEEECCCC---CEEEE--EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 648 --LHEMVTAACYTPDG---QGALV--GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 648 --~~~~V~sla~spdg---~~l~t--gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
.+.....+-|+.|+ .+++. ...-+.|+.|++.....-.. ++.+++......|++++.+++|+ +++.|+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~----l~~~~~~~~~~siSsl~VS~dGk-f~AlGT 300 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF----LRLRKKIKRFKSISSLAVSDDGK-FLALGT 300 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc----cchhhhhhccCcceeEEEcCCCc-EEEEec
Confidence 23466777787776 33332 33345677777654322111 11122234456899999999998 899999
Q ss_pred CCCcEEEEECCcceEEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 721 ADSRIRVVDGIDLVHKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 721 ~Dg~I~VwD~~~~~~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.||.|.|++..++...+ ..+.|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999999977655433 33456778999999999999999999999999988763
No 205
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.42 E-value=2.3e-11 Score=127.81 Aligned_cols=206 Identities=16% Similarity=0.246 Sum_probs=164.1
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc---EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT---CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~---~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
.|.--..+|+|.+|+++ ..++.+.....|.||.....+ ..+++. |...|++|.|+| ..+.|++|+.|..-++|.
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence 34445678999999999 678888888999999987665 455665 999999999999 888999999999999999
Q ss_pred CCC-Cc---EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 637 IPE-RQ---VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 637 l~t-~~---~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
... ++ .+.++.++...+++.|+|.++.|++|+....|.||-++...--. +....++.+...|+++.|+|++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW-----VsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW-----VSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee-----hhhhhCCccccceeeeeccCCc
Confidence 843 32 34567788899999999999999999999999998776543221 1122235677889999999976
Q ss_pred CcEEEEEECCCcEEEEECC--------------------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 713 SSEVLVTSADSRIRVVDGI--------------------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~--------------------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
- +|++|+.|+..|||... .+...+. ...+.+..+.|+|+|..|+-.+.|+.+.+=|.
T Consensus 159 V-LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 159 V-LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred c-eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 4 88889999999999710 1111111 34678899999999999999999999999998
Q ss_pred CCCC
Q 002407 773 EAES 776 (927)
Q Consensus 773 ~s~~ 776 (927)
....
T Consensus 236 ~~p~ 239 (361)
T KOG1523|consen 236 AGPS 239 (361)
T ss_pred CCCc
Confidence 8764
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=1.1e-10 Score=124.92 Aligned_cols=193 Identities=15% Similarity=0.208 Sum_probs=149.1
Q ss_pred CEEEEEecCCcEEEEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 569 DVLDLSWSKSQHLLSSSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
.|..+-|+. .+++..+.+ ..+++.++..+..+..+.....|.+|.++ .+.|+++-.+ .|+|||+++.+++..+
T Consensus 48 ~IvEmLFSS-SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN---r~RLvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 48 SIVEMLFSS-SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEEeeccc-ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEc---cceEEEEEcc-cEEEEecccceeehhh
Confidence 344555554 344444444 45999999999999888889999999995 4567666654 4999999999988644
Q ss_pred c----CCCcEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 647 D----LHEMVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 647 ~----~~~~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
. ....+.++++++.+.+++.-+ ..|.|.|||+.+-+....+ ..|.+.+.+++|+++|. +|++++
T Consensus 123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I---------~aH~~~lAalafs~~G~-llATAS 192 (391)
T KOG2110|consen 123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI---------NAHKGPLAALAFSPDGT-LLATAS 192 (391)
T ss_pred hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE---------EecCCceeEEEECCCCC-EEEEec
Confidence 3 334577777777777888743 3688999999987777665 48999999999999997 899999
Q ss_pred CCCc-EEEEECCcceEEEEeec--CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 721 ADSR-IRVVDGIDLVHKFKGFR--NTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 721 ~Dg~-I~VwD~~~~~~~~~~~~--~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
..|+ ||||...+....+.... ....|.+++|++++++|++.+..++|+||.++...
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9887 78999655444444332 34567899999999999999999999999998754
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.2e-11 Score=142.27 Aligned_cols=288 Identities=16% Similarity=0.204 Sum_probs=197.8
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEcc-CCCCEEEEEECCCcEEEEeC-CC-
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWSI-PE- 639 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp-~dg~~L~sgs~Dg~I~IWDl-~t- 639 (927)
..-..+.|+|= ..++++...-.|+|||.+.++++..|. ....|+.+.+-. .|..++++|+.||.|+||+- .+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 34556777775 678888878899999999999988886 345788888753 35678999999999999963 22
Q ss_pred ---CcEEE-eccCC-------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 640 ---RQVVD-WNDLH-------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 640 ---~~~v~-~~~~~-------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
.+++. +.... +.-.-+.|.....+|++++.-..|+|||.........+.. +...-|+++.-
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~--------~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY--------GSSTLVTALSA 1216 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc--------CCCccceeecc
Confidence 23332 22222 1124456777667777777788999999998887776653 45566787776
Q ss_pred cCCCCcEEEEEECCCcEEEEECC-----cceEEEEeecCCcceEEEEEecCCCE-EEEEECCCcEEEEECCCCCCccccc
Q 002407 709 APGSSSEVLVTSADSRIRVVDGI-----DLVHKFKGFRNTNSQISASLTANGRY-VVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~-----~~~~~~~~~~~~~~v~sv~fspdg~~-Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.....++|++|..||.|++||.+ ..+..++.|....+|..+.+-+.|-- |++|+.||.|++||++.........
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence 55555599999999999999943 35677777766666999999987755 9999999999999999853222111
Q ss_pred cc-----ceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEE
Q 002407 783 SI-----TVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISS 857 (927)
Q Consensus 783 ~~-----~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Las 857 (927)
-. ....+....|...-++|....+...+|+..+.++..+....+-.. ........++|.|.--+||.
T Consensus 1297 iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~--------q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMG--------QRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred eeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCccccc--------CcCCCcceeeecchhHhhhh
Confidence 11 111334445555555555544778999999888777653211100 01122245679998877777
Q ss_pred eccccccCccccccCchh
Q 002407 858 ATNSYFFDRISATWPEEK 875 (927)
Q Consensus 858 as~~~~~d~~v~~W~~e~ 875 (927)
+. .|..+.++..++
T Consensus 1369 G~----~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1369 GS----ADSTVSIYSCEK 1382 (1387)
T ss_pred cc----CCceEEEeecCC
Confidence 64 666677666543
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.4e-11 Score=141.54 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=141.9
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+++..+.....+..|...+..+.|+|+ .+|+.++.+ ..|++||+.+++.............++|+| +++.|+.+
T Consensus 187 ~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~ 265 (429)
T PRK01742 187 RVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFA 265 (429)
T ss_pred EEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEE
Confidence 4455566666777888889999999999 567776654 369999999886544433334455789999 99888776
Q ss_pred E-CCCcEEE--EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 627 S-LDAKVRI--WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 627 s-~Dg~I~I--WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
. .+|.+.| ||+.+++......+...+..+.|+|||+.|+..+ .++...||++......... ..+..
T Consensus 266 ~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---------l~~~~- 335 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL---------VGGRG- 335 (429)
T ss_pred EecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE---------ecCCC-
Confidence 4 6776555 5777777777666667788999999999877665 5678888876532211111 01112
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
....|+|++. .|+..+.+ .+.+||...... .+... .....+.|+|||++|+.++.++.+.+|.+.
T Consensus 336 -~~~~~SpDG~-~ia~~~~~-~i~~~Dl~~g~~~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 -YSAQISADGK-TLVMINGD-NVVKQDLTSGSTEVLSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred -CCccCCCCCC-EEEEEcCC-CEEEEECCCCCeEEecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 3568999988 56666555 466688654322 22111 123467899999999999999998888764
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=3.9e-12 Score=139.58 Aligned_cols=309 Identities=16% Similarity=0.177 Sum_probs=214.7
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCC-CCEEEEEECCCcEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVD-DRYFISGSLDAKVR 633 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~d-g~~L~sgs~Dg~I~ 633 (927)
.....|.+|.+.|..+.|... ..|++++.|..|.+||...+.....|. |...|....|-|.. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344567899999999999887 779999999999999999998887775 88888888898853 45689999999999
Q ss_pred EEeCCCCcE----EEeccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 634 IWSIPERQV----VDWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 634 IWDl~t~~~----v~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
+=.+..... .....|++.|..++.-|+.. -|.+++.|+.+.-+|++.......+.- . .......-..+.++.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c--r-~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC--R-EADEKERVGLYTIAV 289 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee--e-ccCCccceeeeeEec
Confidence 987654322 24667889999999999664 588899999999999988765544331 1 001111236788999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcceE--------EEEee----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDLVH--------KFKGF----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~~~--------~~~~~----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.|.+.+.+++++.|..+++||.+.... ++..+ .....|++++|+.++.-|.++-.|-.||+|.-.-+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 999888999999999999999543221 11111 345678999999888777777778889999433221
Q ss_pred C--cccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCccee-eecCCCC
Q 002407 777 R--PSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGY-TNSPLNG 853 (927)
Q Consensus 777 ~--~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~fSPdg~ 853 (927)
. |...... .. +.. .+ ..+|... ..+..+ =|-|...
T Consensus 370 G~~p~~~s~~---~~---~~k-------------~v-------------YKGHrN~----------~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 370 GSEPDPSSPR---EQ---YVK-------------RV-------------YKGHRNS----------RTVKGVNFFGPRSE 407 (559)
T ss_pred CCCCCCCcch---hh---ccc-------------hh-------------hcccccc----------cccceeeeccCccc
Confidence 1 1111000 00 000 00 0111110 001111 2678999
Q ss_pred eEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 854 TISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 854 ~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
|+.+++ ..+.|.+|.....++..........+ .|+-.+|+-.+|||.|.|-.||||--
T Consensus 408 yVvSGS----DCGhIFiW~K~t~eii~~MegDr~VV-----NCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 408 YVVSGS----DCGHIFIWDKKTGEIIRFMEGDRHVV-----NCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred eEEecC----ccceEEEEecchhHHHHHhhcccceE-----eccCCCCCCchhhccCCccceeeecC
Confidence 999986 67889999876544444333333322 16889999999999999999999974
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.36 E-value=2.2e-12 Score=140.69 Aligned_cols=264 Identities=9% Similarity=0.091 Sum_probs=205.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.-..+.|+.+|++|+.|+.-|.|-.+|+.++....++. ....|..+.|.....++|++.....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHneq~~AVAQK~y~----------- 193 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHNEQFFAVAQKKYV----------- 193 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcchHHHHhhhhceE-----------
Confidence 34578999999999999999999999999998877763 2234555666666666666533221
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEE
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~f 615 (927)
.+++-.+..++.++.| ..|..|.|.|-.+ |++++..|.++.-|+.+|+.+..+. ..+.+..+.-
T Consensus 194 -------------yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 194 -------------YVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred -------------EEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 4566667777777765 4688999999854 6778889999999999999988776 6778888999
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+| -+-.+-+|...|+|.+|.....+.+ .++.|.+.|.++++.++|.|+++.+.|..|+|||++....+....
T Consensus 260 NP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------ 332 (545)
T KOG1272|consen 260 NP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR------ 332 (545)
T ss_pred CC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee------
Confidence 99 7778889999999999998877654 578889999999999999999999999999999999877555432
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC-----CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-----IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~-----~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
.......++|+..| +++.+....|.||.. ......+..|.....|..+.|.|-...|-.|...|-
T Consensus 333 ----tp~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 333 ----TPHPASNLSLSQKG---LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred ----cCCCcccccccccc---ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 13456677888764 677777788999961 234455556666778999999997777666655553
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.36 E-value=2e-12 Score=148.94 Aligned_cols=269 Identities=20% Similarity=0.219 Sum_probs=194.1
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp 577 (927)
..+|.+.|.|+.+...+.+++++.++..+ ++|.. +..++....||.+.|++++.+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lv-----------------------KiwS~et~~~lAs~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLV-----------------------KIWSMETARCLASCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCcccee-----------------------eeeeccchhhhccCCCCccccchhccch
Confidence 35888999999999999999999888766 33433 4567788999999999999988
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-----eccCCC
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-----WNDLHE 650 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-----~~~~~~ 650 (927)
+ -++++++.|..|++|.+.++.++.++. |++.|++|+|+| +.+.+.||++++||.+-...+. .+....
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCc-----cccCCCCCceEeccccccccccCCCCCCccccc
Confidence 7 568999999999999999999998776 999999999999 4478899999999988222111 122335
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.+.++.|...+..+++++.|+.-..|.+.... .+...+.-+.++.+-....+++-.+-.+.+|+.
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh---------------hhccceEEEeccccccccceeeeeeeEeeeeec
Confidence 67778888888999999999998888764321 222223333333333346777778888999996
Q ss_pred Ccc--eEEEEeecCCcceEEEEEecCCC-EEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecC-C
Q 002407 731 IDL--VHKFKGFRNTNSQISASLTANGR-YVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWP-G 806 (927)
Q Consensus 731 ~~~--~~~~~~~~~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~-g 806 (927)
... .+.+.++. ..+..+.++|-.. ...+++.||.+.|||+-.+.+......-......-.|+.++.+++++.+ |
T Consensus 383 ~~g~l~H~l~ghs--d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 383 YTGQLLHNLMGHS--DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred ccchhhhhhcccc--cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCC
Confidence 554 55555554 4466678888554 5568899999999999887665433211122223456666666666554 5
Q ss_pred ceeEEe
Q 002407 807 VGDTWG 812 (927)
Q Consensus 807 ~~~i~~ 812 (927)
+.++.+
T Consensus 461 ql~i~g 466 (1113)
T KOG0644|consen 461 QLYILG 466 (1113)
T ss_pred ceEEec
Confidence 555543
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.35 E-value=3.4e-11 Score=124.83 Aligned_cols=200 Identities=15% Similarity=0.217 Sum_probs=151.9
Q ss_pred ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 453 QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 453 ~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
..|..++++..|+. |-++|.+.+-|-+..|||++++..
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------------------------------------- 185 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------------------------------------- 185 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------------------------------------
Confidence 34678999999987 778999999999999999987521
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe----
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS---- 605 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~---- 605 (927)
+.....|-.|..+|.+++|... +.+++.+.||.||+||++..+--.++-
T Consensus 186 -------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 186 -------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred -------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 0112245579999999999986 789999999999999999765444332
Q ss_pred cCCceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCc--EEEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQ--VVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~--~v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~ 681 (927)
...+...++|++.+.+++++-..|. .|.|.|++... +..+..|...|+.++|.|. ...|++++.|..+.|||+...
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 2567889999998899998876654 59999998743 4457788899999999995 568999999999999999764
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
-........+ .-.....|+.++|++..+..|+++...
T Consensus 321 ~~~~~~dPil----ay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 321 PRENGEDPIL----AYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cccCCCCchh----hhhccceeeeeeecccCCCEEEEEecC
Confidence 3311110000 013567899999998777677766543
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=4e-10 Score=131.15 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=149.4
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCcCcccceeecccccCccccEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
..|.+++...... +.+..+...+...+|||||+.||..+. +..|.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~------~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQ------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------- 237 (429)
T ss_pred eeEEEEcCCCCCC------EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------
Confidence 4677776543332 233457788999999999999987642 3568888876543111
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEE-e
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSS-S 585 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sg-s 585 (927)
+..+.+| +..+.|+|| ..|+.. +
T Consensus 238 ----------------------------------------------------l~~~~~~---~~~~~~SPDG~~La~~~~ 262 (429)
T PRK03629 238 ----------------------------------------------------VASFPRH---NGAPAFSPDGSKLAFALS 262 (429)
T ss_pred ----------------------------------------------------ccCCCCC---cCCeEECCCCCEEEEEEc
Confidence 0011122 234789998 445543 4
Q ss_pred CCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC-Cc--EEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 586 MDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-AK--VRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-g~--I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
.++ .|++||+.+++......+...+....|+| +++.|+..+.+ +. |.++|+.+++...............|+||
T Consensus 263 ~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 263 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred CCCCcEEEEEECCCCCEEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 454 59999999988776665666788999999 99988777654 44 55557777766554444445667899999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc---EEEEECC-cc
Q 002407 661 GQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR---IRVVDGI-DL 733 (927)
Q Consensus 661 g~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~---I~VwD~~-~~ 733 (927)
|++|+..+.+ ..|.+||+.++...... .........|+|+|. .|+.++.++. +.+++.. ..
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-----------~~~~~~~p~~SpDG~-~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGGVQVLT-----------DTFLDETPSIAPNGT-MVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeEEeC-----------CCCCCCCceECCCCC-EEEEEEcCCCceEEEEEECCCCC
Confidence 9999886654 35888999887643221 111233568999998 5666666654 6666642 23
Q ss_pred eEEEEeecCCcceEEEEEec
Q 002407 734 VHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fsp 753 (927)
...+.. +...+...+|+|
T Consensus 410 ~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred eEECcc--CCCCcCCcccCC
Confidence 333433 344566677776
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.34 E-value=1.3e-11 Score=136.90 Aligned_cols=187 Identities=16% Similarity=0.242 Sum_probs=150.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC--------------C
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE--------------R 640 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t--------------~ 640 (927)
-|+.+-.-|.|.+.|....+..+.|. ....|+|+.|-|.+...|+++-.+|.+.+||..- +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 37777777888888877644433332 4578999999998888899999999999997521 1
Q ss_pred c---------------EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 641 Q---------------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 641 ~---------------~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
. +..|.-....|+..+|+|||++||+.+.||.++|||..+.+++..+ +.--+...|
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m---------kSYFGGLLC 337 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM---------KSYFGGLLC 337 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH---------HhhccceEE
Confidence 0 1123333457899999999999999999999999999988776654 356678999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec--------------------------------
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA-------------------------------- 753 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp-------------------------------- 753 (927)
++|+|||+ +|++|++|..|.||...+......++.|..+|..++|.|
T Consensus 338 vcWSPDGK-yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~ 416 (636)
T KOG2394|consen 338 VCWSPDGK-YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGT 416 (636)
T ss_pred EEEcCCcc-EEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCC
Confidence 99999998 899999999999999888888888999999999999982
Q ss_pred ---CC-------------CEEEEEECCCcEEEEECCCCC
Q 002407 754 ---NG-------------RYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 754 ---dg-------------~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++ -.|.+.+.|-.+.+||+....
T Consensus 417 ~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 417 GSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred CCcCCCcccccccccceEEEeecccccceEEEEecchhh
Confidence 01 246788899999999998754
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.5e-10 Score=132.00 Aligned_cols=213 Identities=10% Similarity=0.085 Sum_probs=144.6
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCcCcccceeecccccCccccEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
..|.+++...... +.+..|...|.+.+|+|||+.|+..+. +..|.+|++.+++..
T Consensus 182 ~~l~~~d~dg~~~------~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------------- 239 (435)
T PRK05137 182 KRLAIMDQDGANV------RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------------- 239 (435)
T ss_pred eEEEEECCCCCCc------EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------
Confidence 4566666543322 345678889999999999999988764 467999998665321
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EE-EEEe
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HL-LSSS 585 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L-~Sgs 585 (927)
.+..+.+.+....|+|++ .| ++.+
T Consensus 240 ------------------------------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 240 ------------------------------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred ------------------------------------------------------EeecCCCcccCcEECCCCCEEEEEEe
Confidence 111233455677899984 44 4556
Q ss_pred CCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 586 MDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
.++. |++||+.+++......+........|+| +++.|+..+. +| .|++||+.+++...+......+....|+|+
T Consensus 266 ~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 266 QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred cCCCceEEEEECCCCceEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence 6655 7888999887766555666677899999 9988887764 33 588889888776665555556777899999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----CcEEEEECC
Q 002407 661 GQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SRIRVVDGI 731 (927)
Q Consensus 661 g~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g~I~VwD~~ 731 (927)
|++|+....+ ..|.+||+.++... .+ .....+..+.|+|+++.+++++... ..|.++|..
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~~~-~l----------t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSGER-IL----------TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCceE-ec----------cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 9999887654 35888898655432 11 1122466789999998544444333 257777753
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3e-10 Score=121.03 Aligned_cols=198 Identities=14% Similarity=0.214 Sum_probs=138.3
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCC------------cEEEEEe--cCCceEEEEEccCCCCEEEEEEC-C
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSK------------TCLKIFS--HSDYVTCIQFNPVDDRYFISGSL-D 629 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~------------~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~-D 629 (927)
...|+|++|-|. ..|+.|+.. -|.||..... .+..++. ...+|+.|+|++ |+..+++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~-dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNE-DGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcC-CCCEEeecccCc
Confidence 346899999996 456666654 5889976521 1222333 336899999999 9999998876 4
Q ss_pred CcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 630 AKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
..|.|||..++..+... .....++-+.|+|||.+|++++-|+..++|+.......... .-..+.|...+|
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw---------~lgsgrvqtacW 288 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW---------ILGSGRVQTACW 288 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce---------eccCCceeeeee
Confidence 56999999999887765 44578889999999999999999999999965543322221 133448999999
Q ss_pred cCCCCcEEEEEECCCcEEEEEC--Cc--------ceEEE--------Eeec----CCcceEEEEEecCCCEEEEEECCC-
Q 002407 709 APGSSSEVLVTSADSRIRVVDG--ID--------LVHKF--------KGFR----NTNSQISASLTANGRYVVSASEDS- 765 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~--~~--------~~~~~--------~~~~----~~~~v~sv~fspdg~~Lasgs~Dg- 765 (927)
+|.|..+|++.+....|+-... .. ....+ .... ..+.+.+++|.|.|.|||+.-..+
T Consensus 289 spcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 289 SPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 9999988888777766655431 10 00000 0001 145677899999999999875543
Q ss_pred -------cEEEEECCCC
Q 002407 766 -------YVYVWKYEAE 775 (927)
Q Consensus 766 -------~I~IWdl~s~ 775 (927)
.|.+||....
T Consensus 369 ~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 369 FVLLCKLHISRFDTRKS 385 (445)
T ss_pred hhhhhhhhhhhhccccc
Confidence 3667777653
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=3.9e-12 Score=138.81 Aligned_cols=229 Identities=13% Similarity=0.144 Sum_probs=184.4
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~ 648 (927)
-..+.|+.+ ..|+.|+..|.|-.+|..+++....+.-...|.++.|.. +..+|+++ ....++|||- .|.-+..+..
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH-neq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH-NEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhc-chHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 356788888 569999999999999999999999999888999999997 77777665 5678999994 4555666677
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
...|..+.|-|.--+|++++..|.++.-|+.+|+++..+. ...+.+..|+-+|-+. ++-+|...|+|.+|
T Consensus 209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---------t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlW 278 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---------TGAGRTDVMKQNPYNA-VIHLGHSNGTVSLW 278 (545)
T ss_pred cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---------ccCCccchhhcCCccc-eEEEcCCCceEEec
Confidence 7889999999999899999999999999999999887753 5567788888899765 78889999999999
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCce
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVG 808 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~ 808 (927)
.........+...|.++|.++++.++|+|+||++.|..++|||++.-..+..... ........+ ++...+|++|...+
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~-SqkglLA~~~G~~v 356 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSL-SQKGLLALSYGDHV 356 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccc-ccccceeeecCCee
Confidence 9665555555556788999999999999999999999999999998776554433 112222233 34456688888888
Q ss_pred eEEee
Q 002407 809 DTWGL 813 (927)
Q Consensus 809 ~i~~~ 813 (927)
.+|..
T Consensus 357 ~iw~d 361 (545)
T KOG1272|consen 357 QIWKD 361 (545)
T ss_pred eeehh
Confidence 88863
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.32 E-value=1.5e-10 Score=121.74 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=193.7
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRY-LASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~-LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
+-....+++|.+|+....+... .+..-..++..+.|||||+. |.+...|-.|.||.+.+.+.... .-.
T Consensus 64 lC~~yk~~~vqvwsl~Qpew~c-----kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~------~~p 132 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEWYC-----KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL------PHP 132 (447)
T ss_pred eeeeeccceEEEEEeecceeEE-----EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe------ccc
Confidence 3345667899999977665432 34566788999999999965 55566799999999988654332 122
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
...+..++|.+++.+.+.......... ..+..-. .-..+..+.-.+-..+.|.|+||+.
T Consensus 133 K~~~kg~~f~~dg~f~ai~sRrDCkdy---------v~i~~c~----------~W~ll~~f~~dT~DltgieWsPdg~-- 191 (447)
T KOG4497|consen 133 KTNVKGYAFHPDGQFCAILSRRDCKDY---------VQISSCK----------AWILLKEFKLDTIDLTGIEWSPDGN-- 191 (447)
T ss_pred ccCceeEEECCCCceeeeeecccHHHH---------HHHHhhH----------HHHHHHhcCCCcccccCceECCCCc--
Confidence 344578899999998776543311100 0000000 0022334444566788899999853
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---------------c------
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---------------Q------ 641 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~---------------~------ 641 (927)
.+.+||---.-.+..+...-.+..+.|+| .+++|+.|+.|+.++|.+--+- .
T Consensus 192 ------~laVwd~~Leykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 192 ------WLAVWDNVLEYKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEK 264 (447)
T ss_pred ------EEEEecchhhheeeeeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhh
Confidence 34466644333333444456788999999 9999999999999987542110 0
Q ss_pred ----E-----------------------------------EEecc-------CCCcEEEEEECCCCCEEEEEECC--CeE
Q 002407 642 ----V-----------------------------------VDWND-------LHEMVTAACYTPDGQGALVGSYK--GSC 673 (927)
Q Consensus 642 ----~-----------------------------------v~~~~-------~~~~V~sla~spdg~~l~tgs~D--g~I 673 (927)
. +.... ....+.-++|++|..++++-... +.+
T Consensus 265 e~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pnal 344 (447)
T KOG4497|consen 265 ETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNAL 344 (447)
T ss_pred hhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceE
Confidence 0 00000 11246778999999998886543 579
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.+||++..++.... ....+|..+.|+|..+ .|+++.....+++|....... .......-.|..++|.-
T Consensus 345 W~Wdlq~l~l~avL----------iQk~piraf~WdP~~p-rL~vctg~srLY~W~psg~~~-V~vP~~GF~i~~l~W~~ 412 (447)
T KOG4497|consen 345 WLWDLQNLKLHAVL----------IQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAPSGPRV-VGVPKKGFNIQKLQWLQ 412 (447)
T ss_pred EEEechhhhhhhhh----------hhccceeEEEeCCCCc-eEEEEcCCceEEEEcCCCceE-EecCCCCceeeeEEecC
Confidence 99999876654432 3456799999999876 677777777899998544322 22233446788999999
Q ss_pred CCCEEEEEECCCcE
Q 002407 754 NGRYVVSASEDSYV 767 (927)
Q Consensus 754 dg~~Lasgs~Dg~I 767 (927)
+|..|+..+.|..-
T Consensus 413 ~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 413 PGEFIVLCGKDAFC 426 (447)
T ss_pred CCcEEEEEcCCceE
Confidence 99999999988753
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=1.5e-09 Score=123.18 Aligned_cols=329 Identities=13% Similarity=0.084 Sum_probs=179.9
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCce-EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYV-TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V-~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
+++-..++.|.+.|..+.+.+..+.....+ ..+.|+| |++++++++.||.|.++|+.+.+++...........+++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 345667899999999999999999854444 4578999 99999999999999999999999998888888899999999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-EEE
Q 002407 660 DGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-HKF 737 (927)
Q Consensus 660 dg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~ 737 (927)
||++++++. ..+.+.++|..+.+.+..+...... ......++.++..+|..+.++++--.-+.|.+.|..... ...
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~--~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP--VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE---TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeeccccccc--ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 999999875 5899999999999888775432111 112456788888888877444444455889888854321 122
Q ss_pred EeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCCcccccc---cceeeeeeeecCCCeEE-EEecCCceeEEe
Q 002407 738 KGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESRPSRSKS---ITVTHSYEHFHCQDVSV-AIPWPGVGDTWG 812 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~~~~~~~---~~~~~~~~~~~~~~v~v-avs~~g~~~i~~ 812 (927)
.............|+|+++|++.+ .....|-++|.++......... ..........|+..-.+ +..-.+...+..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 222334567789999999987765 4566799999887644322110 00011111222222111 111112221111
Q ss_pred ecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccc--cCCCceecc
Q 002407 813 LQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTAR--NRSPRTSLD 890 (927)
Q Consensus 813 ~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~--~~s~v~s~~ 890 (927)
.....+..++...-. .+..+........ +.-+|++++++....-......+.+++.+.+..... .......
T Consensus 246 ig~~~v~v~d~~~wk--vv~~I~~~G~glF---i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~-- 318 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWK--VVKTIPTQGGGLF---IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV-- 318 (369)
T ss_dssp EE--TTT-STTTBTS--EEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E--
T ss_pred ccCCccccchhhcCe--EEEEEECCCCcce---eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE--
Confidence 111111111111100 1111111111111 234999999998621112246777777765532111 0000001
Q ss_pred cCCCCCcccCCCCCEEEEEcCCC--cEEEeecCCC
Q 002407 891 ISNGISSSISAWGMVIVTAGLRG--EIRAYQNFGL 923 (927)
Q Consensus 891 ~~~~~~~a~S~dG~vLvTgs~DG--~IrvW~~~gl 923 (927)
. .+.|++||+.+-...+++ .|.+|+...|
T Consensus 319 -~---h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 319 -V---HMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -E---EEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred -e---ccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 1 368999999766665554 5999986554
No 220
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=135.90 Aligned_cols=179 Identities=18% Similarity=0.295 Sum_probs=137.9
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCC-CCEEEEEECCCcEEE
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVD-DRYFISGSLDAKVRI 634 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~d-g~~L~sgs~Dg~I~I 634 (927)
....|.||.+-|+||.|+.+ .+|++|+.|-.+.|||.-..+.+..+. |...|.++.|-|.. +.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999999 678999999999999999888888886 99999999999964 456788999999999
Q ss_pred EeCCCCc-----------EEEeccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecc-cccccccccCCCC
Q 002407 635 WSIPERQ-----------VVDWNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSP-INLQNKKKRSHQR 701 (927)
Q Consensus 635 WDl~t~~-----------~v~~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~-i~~~~~~~~~h~~ 701 (927)
+|+...+ ...+..|...|..++-.|++ ..+.+++.||+|+-||++......... ............-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9997521 12244556788889999988 789999999999999998743221110 0000001112224
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
...++.++|..+.+|++|+.|--.++||.+..+..+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~ 237 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSF 237 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCC
Confidence 567899999999999999999999999965544433
No 221
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.31 E-value=1.1e-10 Score=129.52 Aligned_cols=134 Identities=16% Similarity=0.359 Sum_probs=110.2
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCC--------------CcEEEEE--------------e-cCCceEEEEE
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSS--------------KTCLKIF--------------S-HSDYVTCIQF 615 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t--------------~~~~~~~--------------~-h~~~V~~v~f 615 (927)
...|+|+.|-|. ..++.+-.+|.++++|..- +....+. . -...|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 378999999985 7788889999999997541 1111111 1 2356888999
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
+| |+++|++.+.||.+||||..+.+++.... .-+...|++|+|||++|++|+.|..|.||.+...+.+..-
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG------- 370 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG------- 370 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-------
Confidence 99 99999999999999999999988775433 3468999999999999999999999999999999988765
Q ss_pred cccCCCCCeEEEEEcC
Q 002407 695 KKRSHQRKITGFQFAP 710 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fsp 710 (927)
.+|...|..++|.|
T Consensus 371 --qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 371 --QGHKSWVSVVAFDP 384 (636)
T ss_pred --cccccceeeEeecc
Confidence 48999999999983
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.2e-10 Score=130.95 Aligned_cols=210 Identities=15% Similarity=0.133 Sum_probs=144.1
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEe---CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs---~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+++..+.....+..+...+...+|+|| ..|+..+ .+..|++|++.+++..........+..++|+| +++.|+..
T Consensus 182 ~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~ 260 (429)
T PRK03629 182 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFA 260 (429)
T ss_pred EEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEE
Confidence 3445555555666667788999999999 4566544 24579999999887665554555566789999 88877754
Q ss_pred -ECCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCC
Q 002407 627 -SLDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 627 -s~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
+.+| .|.+||+.+++..........+....|+|||+.|+..+.+ + .|+++|+.++..... . ...
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t---------~~~ 330 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-T---------WEG 330 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-e---------cCC
Confidence 4455 4889999998887777666778899999999998877764 3 455557766644322 1 223
Q ss_pred CCeEEEEEcCCCCcEEEEEECC--CcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCc---EEEEECCC
Q 002407 701 RKITGFQFAPGSSSEVLVTSAD--SRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSY---VYVWKYEA 774 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~D--g~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~---I~IWdl~s 774 (927)
.......|+|+|..++++...+ ..|.+||.... ...+.. ........|+|||++|+.++.++. +++|++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3456788999998544444433 35788885433 222221 122346789999999999988765 67777754
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.8e-10 Score=130.10 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=147.7
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
.|.+|+...... +.|..|...|.+.+|+|||++|+..+.+ ..|.+|++.+++...
T Consensus 185 ~l~i~D~~g~~~------~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---------------- 242 (433)
T PRK04922 185 ALQVADSDGYNP------QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---------------- 242 (433)
T ss_pred EEEEECCCCCCc------eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----------------
Confidence 567776543322 3345678889999999999999988743 468899986553210
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEE-EEEeC
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHL-LSSSM 586 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L-~Sgs~ 586 (927)
+..+.+....+.|+|+ ..| ++.+.
T Consensus 243 ------------------------------------------------------l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 243 ------------------------------------------------------VASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred ------------------------------------------------------eccCCCCccCceECCCCCEEEEEEeC
Confidence 0011222346789998 344 45555
Q ss_pred CC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CCc--EEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 587 DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 587 Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
++ .|++||+.+++......+......++|+| ++++|+..+. ++. |.++++.+++.............++|+|+|
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCCceEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCC
Confidence 55 59999999988765555655667899999 8988887664 444 777787777665444333445578999999
Q ss_pred CEEEEEECCC---eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEECCc-ceE
Q 002407 662 QGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD--SRIRVVDGID-LVH 735 (927)
Q Consensus 662 ~~l~tgs~Dg---~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D--g~I~VwD~~~-~~~ 735 (927)
++|+..+.++ .|.+||+.+++.... .+........|+|++..++++.... +.|.+++... ...
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~~L-----------t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~ 416 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVRTL-----------TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQ 416 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeEEC-----------CCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 9998876543 599999988765422 1112334568999998444444332 4577777532 222
Q ss_pred EEEeecCCcceEEEEEec
Q 002407 736 KFKGFRNTNSQISASLTA 753 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fsp 753 (927)
.+.. ....+...+|+|
T Consensus 417 ~l~~--~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVS--ADGEVREPAWSP 432 (433)
T ss_pred Eccc--CCCCCCCCccCC
Confidence 2222 223345556655
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=2.2e-10 Score=123.31 Aligned_cols=202 Identities=11% Similarity=0.072 Sum_probs=154.1
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc----EEEEEecCCceEEEEEccCCCCEEEEEECC--CcEEEEeCCC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT----CLKIFSHSDYVTCIQFNPVDDRYFISGSLD--AKVRIWSIPE 639 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~----~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--g~I~IWDl~t 639 (927)
..++|..++.. ++.|++|-.+|.+.+|....+. .+..+.....+..|.-++....++++|+.. ..+.|||+.+
T Consensus 104 ~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 34555555542 5789999999999999988442 333344456777888888666777779988 7899999998
Q ss_pred CcEEEec--------c--CCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEE
Q 002407 640 RQVVDWN--------D--LHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 640 ~~~v~~~--------~--~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
.+.+... + .+-+++.+.|-+. ...|++++.-+.+++||++.++. +..+ .....+|+++
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f---------d~~E~~is~~ 253 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF---------DFLENPISST 253 (412)
T ss_pred ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe---------ccccCcceee
Confidence 7544211 1 1246788999987 88999999999999999986543 2222 2457889999
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
...|.+. +|++|..-+.+..||.+.....-. .....+.+.++..+|.+++|++++-|..|+|+|+++....
T Consensus 254 ~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 254 GLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eecCCCc-EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999887 799999999999999765443322 2234678999999999999999999999999999995544
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=5.9e-10 Score=130.14 Aligned_cols=209 Identities=15% Similarity=0.151 Sum_probs=147.0
Q ss_pred EeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC---CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EE
Q 002407 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM---DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~---DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sg 626 (927)
+++..+.....+..|...+....|+|| ..|+..+. +..|++||+.+++......+...+...+|+| +++.|+ +.
T Consensus 186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~ 264 (435)
T PRK05137 186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSL 264 (435)
T ss_pred EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEE
Confidence 445556666778888899999999999 56766653 4689999999988765555777788999999 887765 55
Q ss_pred ECCCc--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeeeeecccccccccccCCCC
Q 002407 627 SLDAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 627 s~Dg~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
+.++. |.+||+.+++...+..+........|+|||+.|+..+. +| .|++||+.++...... ....
T Consensus 265 ~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt----------~~~~ 334 (435)
T PRK05137 265 SQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS----------FGGG 334 (435)
T ss_pred ecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee----------cCCC
Confidence 55655 77789998888776666666778999999999888764 33 6888898776543321 2234
Q ss_pred CeEEEEEcCCCCcEEEEEEC-C--CcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECC------CcEEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSA-D--SRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASED------SYVYVWK 771 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~-D--g~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D------g~I~IWd 771 (927)
.+....|+|+++. |+.... . ..|.+||... ....+. ....+..+.|+|||++|+..+.+ ..|++++
T Consensus 335 ~~~~~~~SpdG~~-ia~~~~~~~~~~i~~~d~~~~~~~~lt---~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 335 RYSTPVWSPRGDL-IAFTKQGGGQFSIGVMKPDGSGERILT---SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred cccCeEECCCCCE-EEEEEcCCCceEEEEEECCCCceEecc---CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 4567889999984 544433 2 3578888532 222222 12235678999999998876543 2577777
Q ss_pred CCCC
Q 002407 772 YEAE 775 (927)
Q Consensus 772 l~s~ 775 (927)
+...
T Consensus 411 l~g~ 414 (435)
T PRK05137 411 LTGR 414 (435)
T ss_pred CCCC
Confidence 7653
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=2.3e-09 Score=112.96 Aligned_cols=178 Identities=13% Similarity=0.254 Sum_probs=132.7
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEec---cCCCcEEEEEECCCCCE
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWN---DLHEMVTAACYTPDGQG 663 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~---~~~~~V~sla~spdg~~ 663 (927)
..|.|||=....++.++....+|.+|.+.+ +.|++. ..+.|+||...+ .+.+..+ ..+..+.+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r---~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR---DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC---CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 469999988888999999999999999976 445544 468899999874 4444333 32344444443334444
Q ss_pred EEE-EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc-EEEEECC--cceEEEEe
Q 002407 664 ALV-GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR-IRVVDGI--DLVHKFKG 739 (927)
Q Consensus 664 l~t-gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~-I~VwD~~--~~~~~~~~ 739 (927)
||. |-.-|.|.|-|+...+...... ..+|...|.|+++..+|. ++++++..|+ |||||.. +.+..++.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~-------I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSI-------INAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceE-------EEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 444 4456899999998765531111 158999999999999987 8999998887 8999964 45555555
Q ss_pred ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
-.....|.+++|+|+..+|+++|+.|+|+||.++....
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 55667899999999999999999999999999987543
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=1.3e-09 Score=127.25 Aligned_cols=210 Identities=17% Similarity=0.186 Sum_probs=142.9
Q ss_pred EeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EE
Q 002407 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sg 626 (927)
+++..+.....+..|...+....|+|+ ..|+..+.+ ..|++||+.+++......+.....++.|+| +++.|+ +.
T Consensus 188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~ 266 (433)
T PRK04922 188 VADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTL 266 (433)
T ss_pred EECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEE
Confidence 445556666667778888999999999 567776643 469999999888765544555666889999 887665 55
Q ss_pred ECCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CCe--EEEEECCCCeeeeecccccccccccCCCC
Q 002407 627 SLDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KGS--CHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 627 s~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg~--I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
+.++ .|++||+.+++......+......++|+|||+.|+..+. +|. |+++++.+++..... ....
T Consensus 267 s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt----------~~g~ 336 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT----------FQGN 336 (433)
T ss_pred eCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee----------cCCC
Confidence 5665 499999999887776655555678899999999887764 444 777777766543221 1223
Q ss_pred CeEEEEEcCCCCcEEEEEECCC--cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC---CcEEEEECCC
Q 002407 702 KITGFQFAPGSSSEVLVTSADS--RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED---SYVYVWKYEA 774 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D---g~I~IWdl~s 774 (927)
.....+|+|+++.++++...++ .|.+||.......... .........|+|||++|+..+.+ +.|+++++..
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3446899999984434333333 5899996433222111 12234467899999998877653 3577787754
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=2.8e-09 Score=124.11 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=125.4
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+..|...|.+.+|+|||+.||..+.+ ..|.+||+.+++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------ 234 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------ 234 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE------------------------------------
Confidence 45678889999999999999887643 358999987654211
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEeCCCcEEEE--eCCCCcEEEEE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLW--HLSSKTCLKIF 604 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs~DgtV~lW--Dl~t~~~~~~~ 604 (927)
+....+.+....|+|+ ..|+ +.+.++...|| |+.++......
T Consensus 235 ----------------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 235 ----------------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ----------------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 0111223456889998 4554 56778776665 45555543333
Q ss_pred ecCCceEEEEEccCCCCEEEEEEC-CCcEEEEe--CCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---eEEEEEC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWS--IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYNT 678 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWD--l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---~I~IwDl 678 (927)
.+...+....|+| +++.|+..+. ++...||. +.+++...............|+|||++|+..+.++ .|.+||+
T Consensus 281 ~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 281 QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 3555567789999 9988876654 45666664 45555433332223345678999999998877654 5999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEE
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR--IRVVD 729 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~--I~VwD 729 (927)
.++...... .........|+|++..++++....+. +.+.+
T Consensus 360 ~~g~~~~lt-----------~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 360 ATGQVTALT-----------DTTRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CCCCeEEcc-----------CCCCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 887654321 11223567899999854444444443 44444
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.22 E-value=8e-09 Score=117.38 Aligned_cols=310 Identities=15% Similarity=0.126 Sum_probs=183.0
Q ss_pred EEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccc
Q 002407 425 FHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
++-...+.|.+.+..+.+... ++..+...-..+.|+|||+++++++.||.|.++|+.+.+.+.++.. ..
T Consensus 10 V~~~~~~~v~viD~~t~~~~~-----~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------G~ 78 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVA-----RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------GG 78 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEE-----EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------SS
T ss_pred EEecCCCEEEEEECCCCeEEE-----EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------CC
Confidence 455667888888877665543 3344433345578999999999999999999999999998777642 22
Q ss_pred cEEEEccCCCCCeeccccc-CCceeeecccccccccccccCcccccceEee-cCCCceEEEcc-------CCCCEEEEEe
Q 002407 505 MLLLANGSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKPICSFQG-------HLDDVLDLSW 575 (927)
Q Consensus 505 ~v~~v~~spd~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~-~s~k~i~~l~g-------H~~~V~~l~~ 575 (927)
....+++++++.+++++.. .+.+ .+++ .+.+++..+.. ....+..|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v-----------------------~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~ 135 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTV-----------------------SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA 135 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEE-----------------------EEEETTT--EEEEEE--EE-TTTS---EEEEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCce-----------------------eEeccccccceeecccccccccccCCCceeEEe
Confidence 3467888999998887643 3333 1222 12344444332 2346778877
Q ss_pred cCC-cEEEEEeC-CCcEEEEeCCCCcEE--EEEecCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCCCcEEEeccCC-
Q 002407 576 SKS-QHLLSSSM-DKTVRLWHLSSKTCL--KIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLH- 649 (927)
Q Consensus 576 spd-~~L~Sgs~-DgtV~lWDl~t~~~~--~~~~h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~- 649 (927)
++. ..++..-. -+.|.+-|....+.+ ..+..........|+| ++++|+.+ ..+..|-++|..+++++......
T Consensus 136 s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 136 SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp -SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS
T ss_pred cCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccc
Confidence 776 54555555 478888898776544 3444667788999999 88887765 45678999999998877543321
Q ss_pred ----CcEEEEEECCC----------CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 650 ----EMVTAACYTPD----------GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 650 ----~~V~sla~spd----------g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
..+..+ .+|. +...++.-....+.+||....+.+.++. ..... .-+..+|+++ +
T Consensus 215 ~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~---------~~G~g-lFi~thP~s~-~ 282 (369)
T PF02239_consen 215 KPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIP---------TQGGG-LFIKTHPDSR-Y 282 (369)
T ss_dssp SBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE----------SSSS---EE--TT-S-E
T ss_pred cccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEE---------CCCCc-ceeecCCCCc-c
Confidence 222222 1222 2222222223455567777777776654 23333 6778899988 5
Q ss_pred EEEE----ECCCcEEEEECCcceEEEEeec-CCcceEEEEEecCCCEEEEEECC--CcEEEEECCCCCCcccc
Q 002407 716 VLVT----SADSRIRVVDGIDLVHKFKGFR-NTNSQISASLTANGRYVVSASED--SYVYVWKYEAESRPSRS 781 (927)
Q Consensus 716 Llsg----s~Dg~I~VwD~~~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~D--g~I~IWdl~s~~~~~~~ 781 (927)
+.+. ....+|.|+|..++........ ....+..+.|+++|+++..+..+ +.|.|||..+.+...+.
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 5555 4568999999888754433321 22348899999999987665543 36999999987665444
No 230
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-09 Score=130.18 Aligned_cols=224 Identities=14% Similarity=0.198 Sum_probs=146.3
Q ss_pred EeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--------EEEeccCCCcEEEEEECCCCCEE
Q 002407 593 WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--------VVDWNDLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 593 WDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--------~v~~~~~~~~V~sla~spdg~~l 664 (927)
|+++.-...+...|...|..++.++.++.+|++|+.||+|++|+++.-. ...+......+.++...+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 6655443444445999999999998566999999999999999986421 11233355789999999999999
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-EEEEEECCCcEEEEECCcc--eEEEEeec
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTSADSRIRVVDGIDL--VHKFKGFR 741 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~Llsgs~Dg~I~VwD~~~~--~~~~~~~~ 741 (927)
|+++.||.|++.++................+.......|..-+|...... .|+.+..-+.|..||.+.. ...++...
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998763222111111111122223333444445544444 7888889999999997643 23334444
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc---cceeeeeeeecCC--CeEEEEe--cCCceeEEeec
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS---ITVTHSYEHFHCQ--DVSVAIP--WPGVGDTWGLQ 814 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~---~~~~~~~~~~~~~--~v~vavs--~~g~~~i~~~~ 814 (927)
..+.|++++.+|.+.++++|+..|.+.+||++-..+...-.. ....+-..++... .+.+... ..+.+.+|++.
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 567899999999999999999999999999987544322110 1112222333322 3333333 34556777766
Q ss_pred CC
Q 002407 815 DT 816 (927)
Q Consensus 815 d~ 816 (927)
.+
T Consensus 1274 ~g 1275 (1431)
T KOG1240|consen 1274 TG 1275 (1431)
T ss_pred cC
Confidence 55
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.18 E-value=1.3e-07 Score=107.03 Aligned_cols=204 Identities=14% Similarity=0.193 Sum_probs=134.0
Q ss_pred CEEEEEecCC-cEEEEEe-CCCcEEEEeCCC-CcEEE---EEec-----------CCceEEEEEccCCCCEEEEEEC-CC
Q 002407 569 DVLDLSWSKS-QHLLSSS-MDKTVRLWHLSS-KTCLK---IFSH-----------SDYVTCIQFNPVDDRYFISGSL-DA 630 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t-~~~~~---~~~h-----------~~~V~~v~fsp~dg~~L~sgs~-Dg 630 (927)
....++++|+ .+|+++. .+++|.++++.. +.... .+.| .....++.|+| ++++|++... ..
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 4456888888 6666665 589999999987 33332 2222 24578999999 9888877654 34
Q ss_pred cEEEEeCCCCc--EEE----eccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECC--CCeeeeecccccccccccCCCC
Q 002407 631 KVRIWSIPERQ--VVD----WNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTS--ENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 631 ~I~IWDl~t~~--~v~----~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~--~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
.|.+|++.... +.. ..........++|+|+++++.+... ++.|.+|++. ++.+.....+...... .....
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~ 245 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG-FTGEN 245 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT-SCSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc-ccccC
Confidence 69999987654 422 2344568999999999998877654 6779999988 5544333222211111 11223
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECC----cceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGI----DLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
....++++|+++.++++....+.|.+|+.. .+...-...........++++|+|++|+++. .++.|.+|+++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 688999999998666666788999999962 2222222222344578899999999999887 566799998853
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.6e-09 Score=121.60 Aligned_cols=207 Identities=17% Similarity=0.187 Sum_probs=134.9
Q ss_pred EeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EE
Q 002407 552 VFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SG 626 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sg 626 (927)
+++..+.....+..+...+...+|+|+ ..|+..+.+ ..|++||+.+++..........+....|+| +++.|+ +.
T Consensus 180 ~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~ 258 (427)
T PRK02889 180 ISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVAL 258 (427)
T ss_pred EECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEE
Confidence 344455566667778889999999999 567766543 359999999988765544556677899999 888776 56
Q ss_pred ECCCcEEEE--eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEE--CCCCeeeeecccccccccccCCCC
Q 002407 627 SLDAKVRIW--SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYN--TSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 627 s~Dg~I~IW--Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwD--l~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
+.++...|| |+.++....+..+........|+|||+.|+..+. +|...||. +.++...... ....
T Consensus 259 ~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt----------~~g~ 328 (427)
T PRK02889 259 SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT----------FTGS 328 (427)
T ss_pred ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe----------cCCC
Confidence 777776655 5556665555555555677899999998887654 45555554 4444332211 1112
Q ss_pred CeEEEEEcCCCCcEEEEEECCC---cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC-c--EEEEEC
Q 002407 702 KITGFQFAPGSSSEVLVTSADS---RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS-Y--VYVWKY 772 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg---~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg-~--I~IWdl 772 (927)
......|+|+|+ .|+..+.++ .|.+||........... ........|+|||++|+.++.++ . +++.++
T Consensus 329 ~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 329 YNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 234578999998 555555443 69999964332221111 12335679999999998877544 2 444444
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.17 E-value=3e-09 Score=110.11 Aligned_cols=116 Identities=16% Similarity=0.375 Sum_probs=92.3
Q ss_pred CCCCEEEEEecCC-cEEE--EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC---CcEEEEeCCC
Q 002407 566 HLDDVLDLSWSKS-QHLL--SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPE 639 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~--Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---g~I~IWDl~t 639 (927)
..++|.+++|+|+ ..|+ .|..+..|.|||++ ++.+..+. ...++.|.|+| +|++|++++.+ |.|.+||+++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 3457999999998 5543 34567899999997 55555554 56788999999 99999998754 5699999999
Q ss_pred CcEEEeccCCCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeee
Q 002407 640 RQVVDWNDLHEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQK 686 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~ 686 (927)
.+.+....+. .++.++|+|+|++|+++.. |+.++||+.. |+++..
T Consensus 135 ~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 135 KKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred CEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 8888776655 4789999999999999875 6789999986 455444
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=2.3e-08 Score=119.31 Aligned_cols=142 Identities=23% Similarity=0.398 Sum_probs=115.5
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++++|.--+.|-+|........ ..+.||++.|..+.|+-||+|+||.|+|.++|+|++++.+...
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p-----~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--------- 211 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKP-----IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--------- 211 (967)
T ss_pred EEEEeccccccEEEEeccccCCc-----ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---------
Confidence 34778888888889987622221 1578999999999999999999999999999999998765322
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
...-+|...|+.+.|+|+ ++
T Consensus 212 -----------------------------------------------------------~~~fgHsaRvw~~~~~~n-~i 231 (967)
T KOG0974|consen 212 -----------------------------------------------------------CTGFGHSARVWACCFLPN-RI 231 (967)
T ss_pred -----------------------------------------------------------cccccccceeEEEEeccc-ee
Confidence 122379999999999998 99
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEe-c-CCceEEEEEccCCCCEEEEEECCCcEEEEeCCC
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFS-H-SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~-h-~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t 639 (927)
+|++.|.+.++|+....+.. .+. | ...|+.++..+ +...+++++.|+.+++|++..
T Consensus 232 ~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 99999999999976644443 554 4 46799999998 888999999999999999854
No 235
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=1.3e-08 Score=114.49 Aligned_cols=318 Identities=15% Similarity=0.131 Sum_probs=188.0
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE-----ECC-----CcEEEEeC
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-----SLD-----AKVRIWSI 637 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg-----s~D-----g~I~IWDl 637 (927)
.+++..++++++.++..+.+..|+|++..+...+.+.... .+.++.|+| .+++|.+- ..+ -.+.+|++
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~v 112 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNV 112 (566)
T ss_pred CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecc-cccccccccccccccCCCCCCCceeeeee
Confidence 3467788899999999999999999999998755554444 899999999 88887662 112 34779999
Q ss_pred CCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-E
Q 002407 638 PERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-E 715 (927)
Q Consensus 638 ~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~ 715 (927)
.++.....+... ..-++..|++|..+ ++--..+.+++|++...+.... +-|...|+.+.++|.... .
T Consensus 113 et~~~~s~~q~k~Q~~W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~~~----------kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 113 ETGVQRSQIQKKMQNGWVPQFSIDESL-AARLVSNEVQFYDLGSFKTIQH----------KLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred ccceehhheehhhhcCcccccccchhh-hhhhhcceEEEEecCCccceee----------eeeccceeeEEecCCCCCce
Confidence 985444332222 12258889988754 3333457899999987443322 356788999999997443 3
Q ss_pred EEE-----EECCCcEEEEECCcc-----eEEEEeecCCcceEEEEEecCCCE-EEEEE--CC---------CcEEEEECC
Q 002407 716 VLV-----TSADSRIRVVDGIDL-----VHKFKGFRNTNSQISASLTANGRY-VVSAS--ED---------SYVYVWKYE 773 (927)
Q Consensus 716 Lls-----gs~Dg~I~VwD~~~~-----~~~~~~~~~~~~v~sv~fspdg~~-Lasgs--~D---------g~I~IWdl~ 773 (927)
+++ .+.-+.|+||..... +..-..+ ...-..+.|.+-|.- |+.++ -| .++++.+++
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~ 259 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ 259 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec
Confidence 333 245678999984311 1111111 111234677766653 22222 22 357888777
Q ss_pred CCCCcccccccceeeeeeeecCCCeEEE---EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecC
Q 002407 774 AESRPSRSKSITVTHSYEHFHCQDVSVA---IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP 850 (927)
Q Consensus 774 s~~~~~~~~~~~~~~~~~~~~~~~v~va---vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP 850 (927)
.......+... .......|.+.+.-.+ ..-+..+.+++.....+..+- .++ --.+-|+|
T Consensus 260 g~s~~V~L~k~-GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~--egp---------------RN~~~fnp 321 (566)
T KOG2315|consen 260 GESVSVPLLKE-GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP--EGP---------------RNTAFFNP 321 (566)
T ss_pred CceEEEecCCC-CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC--CCC---------------ccceEECC
Confidence 33222111111 1122233444331111 122333344443333222211 111 11234999
Q ss_pred CCCeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEEcC------CCcEEEeecCCCc
Q 002407 851 LNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGL------RGEIRAYQNFGLP 924 (927)
Q Consensus 851 dg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~------DG~IrvW~~~glP 924 (927)
.|.+|+.+|-.. ..+.+.+|+.............-++ -+.|+|||.+|+||.. |.-||||+.+|-+
T Consensus 322 ~g~ii~lAGFGN-L~G~mEvwDv~n~K~i~~~~a~~tt-------~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 322 HGNIILLAGFGN-LPGDMEVWDVPNRKLIAKFKAANTT-------VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CCCEEEEeecCC-CCCceEEEeccchhhccccccCCce-------EEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 999999998211 3488999998754322222222122 3789999999999976 6889999999987
Q ss_pred cc
Q 002407 925 VR 926 (927)
Q Consensus 925 ~~ 926 (927)
++
T Consensus 394 l~ 395 (566)
T KOG2315|consen 394 LH 395 (566)
T ss_pred ee
Confidence 64
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=7.3e-09 Score=120.07 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=139.9
Q ss_pred ecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEEC
Q 002407 554 ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSL 628 (927)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~ 628 (927)
+..+.....+..+...+....|+|+ .+|+.+..+ ..|++||+.+++......+...+.+++|+| +++.|+ +.+.
T Consensus 176 d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~ 254 (417)
T TIGR02800 176 DYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSK 254 (417)
T ss_pred cCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECC
Confidence 3344445566667778999999999 567666543 479999999987766555667778899999 887665 4444
Q ss_pred CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
++ .|++||+.+++......+........|+|||+.|+..+.. + .|+++|+.+++.... ..+...+
T Consensus 255 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l----------~~~~~~~ 324 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL----------TFRGGYN 324 (417)
T ss_pred CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe----------ecCCCCc
Confidence 44 5899999988776666555555678999999988876653 3 588888877654322 1234456
Q ss_pred EEEEEcCCCCcEEEEEECCC---cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC---cEEEEEC
Q 002407 704 TGFQFAPGSSSEVLVTSADS---RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS---YVYVWKY 772 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg---~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg---~I~IWdl 772 (927)
..+.|+|++. +|+.+..++ .|.+||.......... .........|+|||++|+..+.++ .+++.+.
T Consensus 325 ~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 325 ASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGGERVLT--DTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCeEECCCCC-EEEEEEccCCceEEEEEeCCCCCeEEcc--CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 7789999987 566666554 7888886542222111 112234568999999988877654 3445443
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=1e-08 Score=118.90 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=129.4
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.|..|...+...+|+|||++||.+..+ ..|++|++.+++...
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----------------------------------- 228 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----------------------------------- 228 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-----------------------------------
Confidence 345577789999999999999987654 479999986653111
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEeCCC--cEEEEeCCCCcEEEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDK--TVRLWHLSSKTCLKI 603 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs~Dg--tV~lWDl~t~~~~~~ 603 (927)
+..+...+..++|+|+ ..|+ +.+.++ .|++||+.++.....
T Consensus 229 -----------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 229 -----------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred -----------------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 1112234456789998 4454 444444 599999998876655
Q ss_pred EecCCceEEEEEccCCCCEEEEEECC-C--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---eEEEEE
Q 002407 604 FSHSDYVTCIQFNPVDDRYFISGSLD-A--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYN 677 (927)
Q Consensus 604 ~~h~~~V~~v~fsp~dg~~L~sgs~D-g--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---~I~IwD 677 (927)
..+........|+| +++.|+..+.. + .|.++|+.+++...+......+..+.|+|+|++|+.+..++ .|.+||
T Consensus 274 ~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 274 TNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 55555566789999 88888766543 3 58888988887665555556677889999999999988776 799999
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
+.++...... .........|+|++..++++...+
T Consensus 353 ~~~~~~~~l~-----------~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 353 LDGGGERVLT-----------DTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCeEEcc-----------CCCCCCCceECCCCCEEEEEEeCC
Confidence 9875443221 111233457999988444444433
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=5.8e-09 Score=112.62 Aligned_cols=153 Identities=16% Similarity=0.247 Sum_probs=122.0
Q ss_pred EEEEEecCC--cEEEEEeCC--CcEEEEeCCCCcEEEEEe----------cCCceEEEEEccCC--CCEEEEEECCCcEE
Q 002407 570 VLDLSWSKS--QHLLSSSMD--KTVRLWHLSSKTCLKIFS----------HSDYVTCIQFNPVD--DRYFISGSLDAKVR 633 (927)
Q Consensus 570 V~~l~~spd--~~L~Sgs~D--gtV~lWDl~t~~~~~~~~----------h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~ 633 (927)
+..|.-++. ..+++|+.. ..+.|||+.+.+.+..-. -.-.++++.|.+ . ...|++++.-+.|+
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEE
Confidence 334444444 557779998 889999999885443332 223567899998 6 77899999999999
Q ss_pred EEeCCCCc-EEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 634 IWSIPERQ-VVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 634 IWDl~t~~-~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+||.+.++ ++. +.-.+..++++...|+++++++|...|.+..||++.+++.... +.+..+.|.++..+|.
T Consensus 230 ~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~--------~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 230 LYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG--------LKGITGSIRSIHCHPT 301 (412)
T ss_pred EecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc--------cCCccCCcceEEEcCC
Confidence 99998753 343 3344678999999999999999999999999999999876552 2578899999999998
Q ss_pred CCcEEEEEECCCcEEEEECCc
Q 002407 712 SSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~ 732 (927)
.+ ++++++-|..|||+|..+
T Consensus 302 ~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 302 HP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred Cc-eEEeeccceeEEEeeccc
Confidence 77 899999999999999655
No 239
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=4.4e-08 Score=110.24 Aligned_cols=274 Identities=15% Similarity=0.173 Sum_probs=170.8
Q ss_pred CEEEEEEcCCCCEEEEE-----eCC-----CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 458 SIWSIKFSLDGRYLASA-----GED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSg-----s~D-----gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.++.|||.|.||.|- -.+ ..+.+|+++++.....+..... . -++..|+.|..+.+-... +.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q----~-~W~~qfs~dEsl~arlv~-nev 148 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ----N-GWVPQFSIDESLAARLVS-NEV 148 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh----c-Ccccccccchhhhhhhhc-ceE
Confidence 58899999999999873 122 3477999998554444432211 1 135666666554433211 111
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEE-----EeCCCcEEEEeCCCCc
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLS-----SSMDKTVRLWHLSSKT 599 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~S-----gs~DgtV~lWDl~t~~ 599 (927)
.++.+..-....-.-|...|+.+.++|. ..+++ .+.-..|+||.+....
T Consensus 149 -----------------------~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 149 -----------------------QFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred -----------------------EEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 1222222111122236778999999986 33443 3555679999887332
Q ss_pred EE-----EEEecCCceEEEEEccCCCCEEEEEEC--C---------CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCE
Q 002407 600 CL-----KIFSHSDYVTCIQFNPVDDRYFISGSL--D---------AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 600 ~~-----~~~~h~~~V~~v~fsp~dg~~L~sgs~--D---------g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~ 663 (927)
.- +.|-..+ =..+.|++....+|+.++. | .++++.++....+..-+...++|.+++|+|+++-
T Consensus 206 ~~~~~a~ksFFkad-kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKAD-KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccc-eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 22 2221222 2346777733344444433 2 4688888886666667777899999999999977
Q ss_pred EEE--EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEEEe
Q 002407 664 ALV--GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKFKG 739 (927)
Q Consensus 664 l~t--gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~~~ 739 (927)
+++ |.+--.+.|||++.. .+.. -..++-+++-|+|.|..++++|- ..|.|-|||..+.....+.
T Consensus 285 F~VvyGfMPAkvtifnlr~~-~v~d-----------f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGK-PVFD-----------FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEEEecccceEEEEcCCCC-EeEe-----------CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence 655 566788999999754 3333 23456678889999984444443 3489999997653332222
Q ss_pred ecCCcceEEEEEecCCCEEEEEEC------CCcEEEEECCCC
Q 002407 740 FRNTNSQISASLTANGRYVVSASE------DSYVYVWKYEAE 775 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~------Dg~I~IWdl~s~ 775 (927)
. ...-+-+.|+|||++|+|++. |+.++||++...
T Consensus 353 ~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 353 K--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred c--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 2 223456899999999999875 788999999763
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.4e-09 Score=115.19 Aligned_cols=264 Identities=19% Similarity=0.323 Sum_probs=169.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEE--ccCCCCCeecccccCCceeeecc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA--NGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v--~~spd~~~la~~~~~~~i~~~~~ 532 (927)
...-|.+|.|...|.+||||..+|.|.++.-..... .++ .+... ...|+-.+|
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~ey----------~~~t~fqshepEFDYL-------------- 78 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-GEY----------NFQTEFQSHEPEFDYL-------------- 78 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc-cce----------eeeeeeeccCcccchh--------------
Confidence 346789999999999999999999999997443221 010 00000 000110000
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc----------
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT---------- 599 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~---------- 599 (927)
..+ .-...|..+.|.++ ..++....|++|++|.+....
T Consensus 79 ----------------------------kSl-eieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~ 129 (433)
T KOG1354|consen 79 ----------------------------KSL-EIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPE 129 (433)
T ss_pred ----------------------------hhh-hhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccc
Confidence 000 12346888999886 458888999999999875321
Q ss_pred -------------------------EEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----CcEEEeccC
Q 002407 600 -------------------------CLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----RQVVDWNDL 648 (927)
Q Consensus 600 -------------------------~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t----~~~v~~~~~ 648 (927)
+.+++. |+--|++|.++. |...++++ .|=.|.+|++.- -.++....+
T Consensus 130 ~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~ 207 (433)
T KOG1354|consen 130 EGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPA 207 (433)
T ss_pred cCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEcccc
Confidence 112222 777899999998 88888776 467899999853 234444433
Q ss_pred C-----CcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeec------cccccccc-ccCCCCCeEEEEEcCCCCcE
Q 002407 649 H-----EMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKS------PINLQNKK-KRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 649 ~-----~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~------~i~~~~~~-~~~h~~~Vtsl~fspdg~~~ 715 (927)
. .-|++..|+|. ...|+-.+..|+|++.|++...+.... +.....+. +......|..+.|++.|. +
T Consensus 208 nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGr-y 286 (433)
T KOG1354|consen 208 NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGR-Y 286 (433)
T ss_pred CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCc-E
Confidence 3 46899999994 467888899999999999854332211 11100000 112235688899999986 3
Q ss_pred EEEEECCCcEEEEECC---cceEEEEeecCC-------------cceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 716 VLVTSADSRIRVVDGI---DLVHKFKGFRNT-------------NSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~---~~~~~~~~~~~~-------------~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++ +-.=-+|+|||.. .....+..|... -.-..++|+-++.+++||+....+++|++..+.
T Consensus 287 il-sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 287 IL-SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EE-EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 43 3344789999963 234444443211 112357899999999999999999999976654
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.10 E-value=7e-09 Score=107.37 Aligned_cols=148 Identities=12% Similarity=0.228 Sum_probs=100.5
Q ss_pred EEEEEccCCCCEEEEEEC----------CCcEEEEeC--CCCcEEEe-ccCCCcEEEEEECCCCCEEEEE--ECCCeEEE
Q 002407 611 TCIQFNPVDDRYFISGSL----------DAKVRIWSI--PERQVVDW-NDLHEMVTAACYTPDGQGALVG--SYKGSCHL 675 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~----------Dg~I~IWDl--~t~~~v~~-~~~~~~V~sla~spdg~~l~tg--s~Dg~I~I 675 (927)
..+.|+| .|++|+.-.. -+...||.+ ........ +.....|..++|+|+|+.|++. ..+..|.|
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567788 6766554332 123445544 33332222 2334569999999999987664 45679999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC---CCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---DSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
||++ .+.+.. -....++.+.|+|+|. +|++++. .|.|.+||..+........ ...+..++|+
T Consensus 88 yd~~-~~~i~~-----------~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~Ws 152 (194)
T PF08662_consen 88 YDVK-GKKIFS-----------FGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWS 152 (194)
T ss_pred EcCc-ccEeEe-----------ecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEc
Confidence 9996 333333 2345678899999998 5666543 4679999987655544432 2347899999
Q ss_pred cCCCEEEEEEC------CCcEEEEECCC
Q 002407 753 ANGRYVVSASE------DSYVYVWKYEA 774 (927)
Q Consensus 753 pdg~~Lasgs~------Dg~I~IWdl~s 774 (927)
|||++|+++.. |..++||++..
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEecC
Confidence 99999999874 78899999964
No 242
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=2.9e-09 Score=113.05 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=172.2
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~-~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.++||.+.|+....-|-..-+++.+.|.++|||--. .++.-..+ .......+.++.+.++...|..+...+.+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI----~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI----YHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh----hhhCCCCceEeeeeccceEEEEEEecceE
Confidence 35678999999999998887889999999999999533 33322222 22334566677777777777776555544
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
.-... +.+.. .-...+.+..|...|..+-|+-. ..+++.+.|+.+.---.+.+..+..+..
T Consensus 93 tefs~---------sedfn---------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~ 154 (404)
T KOG1409|consen 93 TEFAL---------SEDFN---------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF 154 (404)
T ss_pred EEEEh---------hhhhh---------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe
Confidence 21110 00000 11344556789999999999876 8899999998876555666665554444
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCC---CcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t---~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
....+++.|.- . +...|...|.|.+..+.. +.+....++.+.+.+++|.|....|.+|..|..+.+||+-.++-
T Consensus 155 ~~~~t~~~~d~-~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 155 ETPASALQFDA-L--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred eccCCCCceee-E--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc
Confidence 44444555543 2 556666667766555433 33445677789999999999999999999999999999977654
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..-.. .+|...|..+...+.-. .+++++.||.|.+|+
T Consensus 232 ~~~el--------~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 232 TAYEL--------QGHNDKVQALSYAQHTR-QLISCGEDGGIVVWN 268 (404)
T ss_pred eeeee--------ccchhhhhhhhhhhhhe-eeeeccCCCeEEEEe
Confidence 43221 47888888888777654 799999999999998
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=2.8e-08 Score=115.91 Aligned_cols=209 Identities=13% Similarity=0.146 Sum_probs=137.9
Q ss_pred eecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEE
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGS 627 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs 627 (927)
.+..+.....+..+...+....|+|+ .+|+..+.+ ..|.+|++.+++..........+....|+| +++.|+ +..
T Consensus 184 ~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~ 262 (430)
T PRK00178 184 SDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLS 262 (430)
T ss_pred ECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEc
Confidence 34455555666677788999999999 567665543 369999999887765544455566799999 888776 444
Q ss_pred CCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 628 LDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 628 ~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
.++ .|.+||+.+++...............|+|||+.|+..+. +| .|+++++.+++..... .....
T Consensus 263 ~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------~~~~~ 332 (430)
T PRK00178 263 KDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------FVGNY 332 (430)
T ss_pred cCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee----------cCCCC
Confidence 555 588889999887766666666777899999998877664 33 5888888777643321 11122
Q ss_pred eEEEEEcCCCCcEEEEEECCC--cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC-C--cEEEEECCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADS--RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED-S--YVYVWKYEA 774 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g--~I~IWdl~s 774 (927)
.....|+|++..++++...++ .|.+||........... ........|+|||++|+..+.+ + .|+++++..
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 345689999985444443344 47788864432221111 1122356899999999877654 3 466666643
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.7e-08 Score=114.05 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=127.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+..|...+...+|+|||++||..+.+ ..|.+|++.+++....
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---------------------------------- 238 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---------------------------------- 238 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc----------------------------------
Confidence 345677889999999999999877644 3588888866532110
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEeCCC--cEEEEeCCCCcEEEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSSMDK--TVRLWHLSSKTCLKI 603 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs~Dg--tV~lWDl~t~~~~~~ 603 (927)
....+.+....|+|+ .+|+ +.+.++ .|++||+.+++....
T Consensus 239 ------------------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 239 ------------------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV 282 (430)
T ss_pred ------------------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence 001122335788988 4454 444454 588889998876655
Q ss_pred EecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC---eEEEEE
Q 002407 604 FSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG---SCHLYN 677 (927)
Q Consensus 604 ~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg---~I~IwD 677 (927)
..+........|+| +++.|+..+. ++ .|.++++.+++...............|+|+|++|+....++ .|.+||
T Consensus 283 t~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 283 TNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred ccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 44555667789999 8887766654 33 47788888887655433233345678999999998876542 588899
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc--EEEEEC
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR--IRVVDG 730 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~--I~VwD~ 730 (927)
+.++...... .........|+|+|..++++...++. |.+++.
T Consensus 362 l~tg~~~~lt-----------~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 362 LQRGSVRILT-----------DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred CCCCCEEEcc-----------CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 9887643321 11112245799999855455444443 555554
No 245
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.08 E-value=2.8e-07 Score=97.46 Aligned_cols=153 Identities=13% Similarity=0.236 Sum_probs=115.1
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCC-CCcEEEEEe---cCCceEEEEEccCCCCE-EEE-EECCCcEEEEeCCC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS-SKTCLKIFS---HSDYVTCIQFNPVDDRY-FIS-GSLDAKVRIWSIPE 639 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~-t~~~~~~~~---h~~~V~~v~fsp~dg~~-L~s-gs~Dg~I~IWDl~t 639 (927)
...+|.++.+.++..++ -..+.|+||... ..+.++.+. ....+.++ .|..... |+. |-.-|.|.|-|+..
T Consensus 93 f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~--~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSL--CPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred eccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEee--cCCCCceEEEcCCCccceEEEEEhhh
Confidence 45678888887764333 346789999987 445565554 23333333 3323333 332 34468899999987
Q ss_pred CcE---EEeccCCCcEEEEEECCCCCEEEEEECCCe-EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 640 RQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 640 ~~~---v~~~~~~~~V~sla~spdg~~l~tgs~Dg~-I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.+. .....|...|.+++++-+|..+|+++..|+ |+|||..++..+.++.- -.....|++++|+|+.. +
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-------G~d~A~iy~iaFSp~~s-~ 240 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR-------GVDRADIYCIAFSPNSS-W 240 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec-------CCchheEEEEEeCCCcc-E
Confidence 655 667888999999999999999999999998 89999999999887542 24556799999999876 8
Q ss_pred EEEEECCCcEEEEEC
Q 002407 716 VLVTSADSRIRVVDG 730 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~ 730 (927)
|++++..|+|+||..
T Consensus 241 LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSL 255 (346)
T ss_pred EEEEcCCCeEEEEEe
Confidence 999999999999974
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.2e-08 Score=114.51 Aligned_cols=269 Identities=14% Similarity=0.128 Sum_probs=178.7
Q ss_pred ceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 411 RRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN--GSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 411 ~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~--~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
...+.++.|++.++++|...-.|++|+...-.+ .+.-|. ..|.-.-++.|-..++---.|.+|-+..--..
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEccccee-------eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 344667889999999999999999998553222 123342 34555555666566666667887766532111
Q ss_pred cccceeecccccCccccEEEEccC-CCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGS-PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~s-pd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~ 567 (927)
.....+ ...-..+.++ +...++..+...... .+.-..+..+..|....
T Consensus 127 hy~~RI--------P~~GRDm~y~~~scDly~~gsg~evY-----------------------RlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 127 HYRTRI--------PKFGRDMKYHKPSCDLYLVGSGSEVY-----------------------RLNLEQGRFLNPFETDS 175 (703)
T ss_pred eeeeec--------CcCCccccccCCCccEEEeecCcceE-----------------------EEEcccccccccccccc
Confidence 000000 0000111111 111122221111111 11112455666677777
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCC-----ceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSD-----YVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-------h~~-----~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
+.++++..++- ++|++|+.+|.|.+||.++...+.++. |.. .|+++.|.. ++-.+++|..+|.|.|
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLI 254 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEE
Confidence 89999999997 888899999999999999887776664 222 399999997 7999999999999999
Q ss_pred EeCCCCcEEEeccCC--CcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLH--EMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~--~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
||+++.+.+....|. -+|..+.|.+.+. -.++......++|||-.+++....+ .....++.+++.|+
T Consensus 255 yDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asi----------Ept~~lND~C~~p~ 324 (703)
T KOG2321|consen 255 YDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASI----------EPTSDLNDFCFVPG 324 (703)
T ss_pred EEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeec----------cccCCcCceeeecC
Confidence 999999888777665 4788899977532 3344445667999999999887664 34556899999998
Q ss_pred CCcEEEEEECCCcEEEEE
Q 002407 712 SSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD 729 (927)
+. +++++-.++.+..|=
T Consensus 325 sG-m~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 325 SG-MFFTANESSKMHTYY 341 (703)
T ss_pred Cc-eEEEecCCCcceeEE
Confidence 76 888888887776654
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=4.8e-08 Score=114.33 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=103.1
Q ss_pred EEEecCC-cEEE-EEeCCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEE
Q 002407 572 DLSWSKS-QHLL-SSSMDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVD 644 (927)
Q Consensus 572 ~l~~spd-~~L~-Sgs~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~ 644 (927)
...|+|+ ..|+ +.+.++. |++||+.+++......+........|+| +++.|+..+. ++ .|.++|+.+++...
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 4688998 4454 4566664 8888998887665555666678899999 8887776554 33 46777888777655
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
...........+|+|||++|+..+.+ + .|.++|+.++....... . .......|+|++..++++...
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---------~--~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---------T--RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---------C--CCCCCceECCCCCEEEEEEec
Confidence 43222334457899999998886653 3 46667887776432211 1 111234799999855555555
Q ss_pred CCc--EEEEECC-cceEEEEeecCCcceEEEEEec
Q 002407 722 DSR--IRVVDGI-DLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 722 Dg~--I~VwD~~-~~~~~~~~~~~~~~v~sv~fsp 753 (927)
++. |++++.. .....+.. ....+...+|+|
T Consensus 414 ~g~~~l~~~~~~G~~~~~l~~--~~g~~~~p~Wsp 446 (448)
T PRK04792 414 QGKQVLAAVSIDGRFKARLPA--GQGEVKSPAWSP 446 (448)
T ss_pred CCceEEEEEECCCCceEECcC--CCCCcCCCccCC
Confidence 554 5666642 22222222 223345556665
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.05 E-value=7.4e-10 Score=136.63 Aligned_cols=230 Identities=17% Similarity=0.250 Sum_probs=171.7
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
++.|-..|.+|.=+|...+.+||+.||.|++|....++.+..+.. .+. ..+..+.|+.+|........++.+
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt---~g~-s~vtr~~f~~qGnk~~i~d~dg~l---- 2275 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT---AGN-SRVTRSRFNHQGNKFGIVDGDGDL---- 2275 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec---cCc-chhhhhhhcccCCceeeeccCCce----
Confidence 345677899999999999999999999999999998887766542 223 667778888888888777777776
Q ss_pred ccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEE---eCCCcEEEEeCCCCc---EEEEEe
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSS---SMDKTVRLWHLSSKT---CLKIFS 605 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sg---s~DgtV~lWDl~t~~---~~~~~~ 605 (927)
.+|....++....+.|.....+..|-. ..++++ +.++.+.+||.--.. ++. ..
T Consensus 2276 -------------------~l~q~~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~ 2334 (2439)
T KOG1064|consen 2276 -------------------SLWQASPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TC 2334 (2439)
T ss_pred -------------------eecccCCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee-ee
Confidence 566667788889999999999998876 445554 347889999965332 233 34
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
|...++++++-| ...+|++|+.+|.|++||++..+++..+.. +. ...+|++|+..|.|+||++....++.
T Consensus 2335 H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred cCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhh
Confidence 999999999999 999999999999999999999887765443 33 56689999999999999999988777
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.++.......+ .....++..-+-...|.+++.|++
T Consensus 2405 ~~p~e~ak~gf----Fr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2405 TFPSEHAKQGF----FRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cCchhhcccch----hhhcCceeeeccCceEEEecCCCC
Confidence 76543311111 112223322222236778877763
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.05 E-value=3.2e-08 Score=105.17 Aligned_cols=275 Identities=17% Similarity=0.228 Sum_probs=167.7
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCC------------CCEEEEEEcCCCC--EEEEEeCCCcEEEEec
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASAGEDCVIHVWQV 485 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~------------~~I~~vafSpdG~--~LaSgs~DgtVrVWdv 485 (927)
...++++|..+|+|-+|......-.......+++.|. ..|..+.|.++++ .++..+.|.+|++|.+
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi 115 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKI 115 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeee
Confidence 4467899999999999975432211111223455554 4688899998765 5666678999999998
Q ss_pred CcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE-c
Q 002407 486 VESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-Q 564 (927)
Q Consensus 486 ~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-~ 564 (927)
........-......+....+..+ .......... .+...|.+.+ .
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~l--------------------------------r~p~~~~~~~--~vea~prRv~aN 161 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSL--------------------------------RLPVEGRHDL--EVEASPRRVYAN 161 (433)
T ss_pred eccccccccccccccCCCCcccee--------------------------------eceeeccccc--eeeeeeeeeccc
Confidence 765433211100000000000000 0000000000 0011222333 4
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC-CcEEEEEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t-~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+|+--|.+|.+..|+..+.+..|=.|.+|+++- .+...+.. .+.-|++..|+|..-+.|+-.+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 688899999999996666667788999999873 23322221 345689999999878889989999999999
Q ss_pred eCCCCcEEE----ecc-------------CCCcEEEEEECCCCCEEEEEECCCeEEEEECC-CCeeeeeccccccccccc
Q 002407 636 SIPERQVVD----WND-------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 636 Dl~t~~~v~----~~~-------------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~ 697 (927)
|++...+-. ++. .-..|..+.|+++|+++++-. --+|++||+. ..+.+.++++....+.+.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHH
Confidence 998543211 111 113588899999999998764 3689999994 444555544322211110
Q ss_pred ---CCCC---CeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 698 ---SHQR---KITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 698 ---~h~~---~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.... .-..++|+.++. .+++|+....+++|+.
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFNL 358 (433)
T ss_pred HHHhhccchhheeEEEEcCCcc-eEecccccceEEEecC
Confidence 1111 224567888765 8999999999999994
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=4.1e-08 Score=114.95 Aligned_cols=207 Identities=15% Similarity=0.199 Sum_probs=132.7
Q ss_pred ecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEE-EEC
Q 002407 554 ALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-DK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSL 628 (927)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~-Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~s-gs~ 628 (927)
+..+.....+..+...+....|+|| .+|+..+. ++ .|++||+.+++..............+|+| +++.|+. ...
T Consensus 204 d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSP-DG~~La~~~~~ 282 (448)
T PRK04792 204 DYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSP-DGKKLALVLSK 282 (448)
T ss_pred eCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECC-CCCEEEEEEeC
Confidence 4444444556667778899999999 55665543 33 58999999887654433344456789999 8887764 566
Q ss_pred CCc--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC-CC--eEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 DAK--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 Dg~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
++. |.+||+.+++......+.......+|+|||+.|+..+. ++ .|+++|+.+++..... ......
T Consensus 283 ~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt----------~~g~~~ 352 (448)
T PRK04792 283 DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT----------FEGEQN 352 (448)
T ss_pred CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe----------cCCCCC
Confidence 665 88889988887776665566778899999998877654 33 4777788776643321 111223
Q ss_pred EEEEEcCCCCcEEEEEECCCc--EEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEECC-Cc--EEEEECCC
Q 002407 704 TGFQFAPGSSSEVLVTSADSR--IRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASED-SY--VYVWKYEA 774 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~--I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~--I~IWdl~s 774 (927)
....|+|+++.++++...++. |.++|..... ..+.. ........|+|||++|+..+.+ +. |++++.+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~---~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS---TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 456899999855555554554 4445643322 22221 1122345899999988776643 33 67777643
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.02 E-value=4.3e-08 Score=111.08 Aligned_cols=139 Identities=18% Similarity=0.218 Sum_probs=120.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~s 654 (927)
..++-|...|.|.++++..++....+. |.+.|+++.++. +-..|.+++.|+.+.+|+...+..+. +...+..+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 468888999999999999999988886 999999999998 78889999999999999999988876 4555678999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC-----CCcEEEEEECCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-----SSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-----g~~~Llsgs~Dg~I~VwD 729 (927)
++++|||+.+++++ +.|++||+++.+.+..+ .+|..+|.+++|... |..+|.+...+..|.+|-
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~f---------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITF---------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEe---------cCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99999999999986 68999999999998886 499999999999876 565555566777788885
No 252
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=9.4e-08 Score=107.02 Aligned_cols=287 Identities=17% Similarity=0.202 Sum_probs=177.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGE-----------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~-----------DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
.|.+ |.-+.|||+.+||+|-+. -..++|||+.+|..+..+... ......-....||.|.+++|.-.
T Consensus 248 ~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 248 YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceecc--CCCccccceEEeccCCceeEEec
Confidence 3765 889999999999999753 257999999999888776432 22233344678888888887654
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeC-----CCcEEEEeCC
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSM-----DKTVRLWHLS 596 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~-----DgtV~lWDl~ 596 (927)
.+... .... ..+.-+..+.+ .-..|....|+|. ..||--.. -..+.|-.+.
T Consensus 325 ~~sis-IyEt-----------------psf~lld~Ksl-----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 325 GNSIS-IYET-----------------PSFMLLDKKSL-----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred cceEE-EEec-----------------Cceeeeccccc-----CCccccCcccCCCcceEEEEcccccCCcceEEEEecC
Confidence 43221 1100 01111111211 2345777889997 44443322 1346677777
Q ss_pred CCcEEEEEe-cCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCc-EEEeccCCCcEEEEEECCCCCEE
Q 002407 597 SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQ-VVDWNDLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 597 t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~spdg~~l 664 (927)
+++.+++-. +.-.=..+.|-. +|.+|+.-- .-..+-|+.++... .+......+.|...+|-|.|..+
T Consensus 382 s~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKF 460 (698)
T ss_pred ccceeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeE
Confidence 777666554 222223345555 677776531 11235666666654 34567778899999999999887
Q ss_pred EEEEC---CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCcceEEEEe
Q 002407 665 LVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVVDGIDLVHKFKG 739 (927)
Q Consensus 665 ~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg--s~Dg~I~VwD~~~~~~~~~~ 739 (927)
++-+. ..++.+|-+.+......+.. .-.....+.+.|+|.|..+++++ +..|.+.++|+.-...+...
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk-------~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~ 533 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVK-------ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA 533 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhh-------hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc
Confidence 77543 35689998875221111110 12235577899999998544443 56899999996532222223
Q ss_pred ecCCcceEEEEEecCCCEEEEEEC------CCcEEEEECCC
Q 002407 740 FRNTNSQISASLTANGRYVVSASE------DSYVYVWKYEA 774 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~------Dg~I~IWdl~s 774 (927)
+......+.+.|.|.|+|+++++. |.--+||++..
T Consensus 534 ~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 534 SPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 333445667899999999999875 44567787765
No 253
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.7e-08 Score=112.44 Aligned_cols=252 Identities=17% Similarity=0.238 Sum_probs=170.6
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR 534 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~ 534 (927)
......|+.|+....|+|.||.||.++|-.+.+........ + ++..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-------------------g--laa~------------- 58 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-------------------G--LAAA------------- 58 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-------------------c--cccc-------------
Confidence 34567899999999999999999999999887653221110 0 0000
Q ss_pred cccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCce
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYV 610 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V 610 (927)
. +-..-+++.||.+.|.-+.|..+ +.|-|+..+|.|.+|-+-.+.....+ ...+.|
T Consensus 59 ---------s-----------nLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV 118 (1189)
T KOG2041|consen 59 ---------S-----------NLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVV 118 (1189)
T ss_pred ---------c-----------ccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEE
Confidence 0 00122467899999999999987 77888999999999998877644332 256779
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
.++.|+. +|..|+....||.|.+=.+...++-...-.......+.|++|.+.++.+-..|.+++||...+-.. ++...
T Consensus 119 ~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~ 196 (1189)
T KOG2041|consen 119 VSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFER-KLEKD 196 (1189)
T ss_pred EEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHH-hhhhc
Confidence 9999999 999999999999998877765544321111224557899999999999999999999998653211 11100
Q ss_pred c--c-cccccCCCCCeEEEEEc--------CCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEE
Q 002407 691 L--Q-NKKKRSHQRKITGFQFA--------PGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYV 758 (927)
Q Consensus 691 ~--~-~~~~~~h~~~Vtsl~fs--------pdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~L 758 (927)
. . ..........|..+.|. |+.+ .|+++...|.+.|-...+ ....+.. ..-.+..+.|+++|..|
T Consensus 197 c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vL 273 (1189)
T KOG2041|consen 197 CEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVL 273 (1189)
T ss_pred eEEeeeeeecCCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEE
Confidence 0 0 00011223335556654 3444 799999999998875322 1111111 12457789999999999
Q ss_pred EEEECCC
Q 002407 759 VSASEDS 765 (927)
Q Consensus 759 asgs~Dg 765 (927)
+.++.+.
T Consensus 274 AvcG~~~ 280 (1189)
T KOG2041|consen 274 AVCGNDS 280 (1189)
T ss_pred EEccCcc
Confidence 9998754
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.97 E-value=7.2e-09 Score=123.57 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=150.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
+.|....+.-+.+.++.+..+..+-+||...+....+++. ...........+-.+++..+++++..-+.+..+...
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~--- 163 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH--- 163 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCC-CceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---
Confidence 4444466666788899999999999999988766655431 112222333445566676777776655555332211
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEE
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTCI 613 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~--~~~h~~~V~~v 613 (927)
...+++ .+.||.+.|..+.|+-+ .++++.|+|.++|+|++++.+... .|.|+..|+.+
T Consensus 164 ------------------~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 164 ------------------EDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred ------------------ccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 122333 68899999999999998 789999999999999999987764 56799999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
.|.| + ++++++.|.+.++|+....++.....|. ..+..++..++...+++++.|+.+++|++..
T Consensus 225 ~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 225 CFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9998 4 8999999999999987665555444443 5799999999999999999999999999864
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=3e-08 Score=103.62 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=176.0
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEecCcCcccceeecccccCcc-
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL---DGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHL- 503 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp---dG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~- 503 (927)
.-|++.+|+....++..+-..|. --+..+..|.|.- +|. .|+-+-.+|.|.++..........+.........
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~--~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQC--TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeee--ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhh
Confidence 34677888777666665433332 2345677788864 555 5677778999999988766554444321111111
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHL 581 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L 581 (927)
....++.|++-+..+++....+.+.... .-...-+.++.+++|.-+++-..|+.. +.+
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~--------------------~t~~~le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVY--------------------ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEe--------------------cceeeeeecccccccceeeeeeecccCCCceE
Confidence 1245667777776666665555442100 000111345578899999999999865 789
Q ss_pred EEEeCCCcEEEEeCC-CCcEEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCCCcEEEEEE
Q 002407 582 LSSSMDKTVRLWHLS-SKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~-t~~~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~~~V~sla~ 657 (927)
.+|+.|+.+..||++ .++.+..- .|...|.+|.-+|..+.+|++|+.|..|++||.++ ++.+......+.|+.+..
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~ 261 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH 261 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEe
Confidence 999999999999999 44444432 29999999999997889999999999999999984 677766666789999999
Q ss_pred CCCCC-EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEE-EE
Q 002407 658 TPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIR-VV 728 (927)
Q Consensus 658 spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~-Vw 728 (927)
+|.-. .+++++.-.-.+|-++..+....... ....+.|..-++.-.|... ..+|++++ .|..|+ +|
T Consensus 262 ~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~----~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 262 HPEIFHRLLAACMHNGAKILDSSDKVLEFQIV----LPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cchhhhHHHHHHHhcCceEEEecccccchhee----eeccccccceeeccccccc-cceeeeeeccccceeeee
Confidence 99433 34445555557777776655441111 1112456666666666433 22566654 444433 44
No 256
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.95 E-value=2.4e-07 Score=103.26 Aligned_cols=319 Identities=17% Similarity=0.175 Sum_probs=189.2
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC---------------
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--------------- 630 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--------------- 630 (927)
..-++...+|||.+.++....-..|.+|.-.....+..+.| ..|..+.|+| .++||.+-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRH-PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeeec-CCceecccCc-ccceeeeeccCCccChhhccCCccccC
Confidence 44578889999998877777778899999888876666665 4589999999 999999976543
Q ss_pred cEEEEeCCCCcEEEeccCCC-c--EE-EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 631 KVRIWSIPERQVVDWNDLHE-M--VT-AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~-~--V~-sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
.+.+||+.++.++..+.... . .. -+.|+-+.++++-- ....++|+++ +...... .+ + ......|..+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~-p~----~--~lr~~gi~dF 179 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEH-PF----K--NLRPVGILDF 179 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccC-ch----h--hccccceeeE
Confidence 49999999999987554432 1 23 67888888776544 3457999997 3333211 10 0 1223568889
Q ss_pred EEcCCCCc-EEEE-----EECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEE-----------CCCcE
Q 002407 707 QFAPGSSS-EVLV-----TSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSAS-----------EDSYV 767 (927)
Q Consensus 707 ~fspdg~~-~Lls-----gs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-----------~Dg~I 767 (927)
.|+|.+.. .|+. ....++++||.... .+...... ...-..+.|.+.|++|+.-- ...++
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 99997432 2332 35678899998532 11111111 12234578889998876431 13568
Q ss_pred EEEECCCCCCcccccccceeeeeeeecCC--Ce-EEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcc
Q 002407 768 YVWKYEAESRPSRSKSITVTHSYEHFHCQ--DV-SVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSAT 844 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~~~~~~~~~~~~--~v-~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~ 844 (927)
+|+++.....+... ..........|.+. .. .+...-+....+.+..++. ... .+..+. .
T Consensus 258 yl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl-~~~----~Pe~~r------------N 319 (561)
T COG5354 258 YLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL-RFY----FPEQKR------------N 319 (561)
T ss_pred EEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccce-EEe----cCCccc------------c
Confidence 99998854333221 11111111122111 11 1111222223333333331 111 111111 1
Q ss_pred eeeecCCCCeEEEeccccccC--ccccccCch-hhccccccCCCceecccCCCCCcccCCCCCEEEEEcC------CCcE
Q 002407 845 GYTNSPLNGTISSATNSYFFD--RISATWPEE-KLVLTARNRSPRTSLDISNGISSSISAWGMVIVTAGL------RGEI 915 (927)
Q Consensus 845 ~~~fSPdg~~Lasas~~~~~d--~~v~~W~~e-~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~------DG~I 915 (927)
.+.|||.++++..++ |.. +.+.+|+.. ++........+-++ -+-|||||+++-|+-. |..|
T Consensus 320 T~~fsp~~r~il~ag---F~nl~gni~i~~~~~rf~~~~~~~~~n~s-------~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 320 TIFFSPHERYILFAG---FDNLQGNIEIFDPAGRFKVAGAFNGLNTS-------YCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred cccccCcccEEEEec---CCccccceEEeccCCceEEEEEeecCCce-------EeeccCCceEEEecCCCcccccCcce
Confidence 134999999999987 322 567778754 22111111111111 3679999999999853 7889
Q ss_pred EEeecCCCcc
Q 002407 916 RAYQNFGLPV 925 (927)
Q Consensus 916 rvW~~~glP~ 925 (927)
+||+.+|-++
T Consensus 390 ~l~~v~g~~~ 399 (561)
T COG5354 390 KLWDVYGAKV 399 (561)
T ss_pred EEEEecCchh
Confidence 9999999764
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=3.2e-06 Score=91.46 Aligned_cols=274 Identities=12% Similarity=0.202 Sum_probs=173.4
Q ss_pred eEEEEeccC--cccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCcccc
Q 002407 431 VRVRQYGKS--CKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 431 ~~V~i~~~~--s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
.-|..|+.. ++++.. ..+-++.+.++-|+|+|++++|.++-.+ |.|-.|.++...-..+++.
T Consensus 16 ~gI~v~~ld~~~g~l~~----~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln--------- 82 (346)
T COG2706 16 QGIYVFNLDTKTGELSL----LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN--------- 82 (346)
T ss_pred CceEEEEEeCcccccch----hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee---------
Confidence 345555544 333333 2345788899999999999999998654 6666666653211111100
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EEEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSS 584 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L~Sg 584 (927)
...+.++ +-+.+++++++ +|+++
T Consensus 83 ------------------------------------------------------~~~~~g~--~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 83 ------------------------------------------------------RQTLPGS--PPCYVSVDEDGRFVFVA 106 (346)
T ss_pred ------------------------------------------------------ccccCCC--CCeEEEECCCCCEEEEE
Confidence 0001111 12667888884 56666
Q ss_pred eC-CCcEEEEeCCC-Cc---EEEEEecCCc----------eEEEEEccCCCCEEEEEEC-CCcEEEEeCCCCcEEE----
Q 002407 585 SM-DKTVRLWHLSS-KT---CLKIFSHSDY----------VTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQVVD---- 644 (927)
Q Consensus 585 s~-DgtV~lWDl~t-~~---~~~~~~h~~~----------V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t~~~v~---- 644 (927)
.. -+.|.++-++. |. .+..+.|... +....|.| ++++|++... -..|.+|++..+++..
T Consensus 107 nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 54 57899998865 33 2344456666 88999999 9999988765 2359999999887643
Q ss_pred eccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
..........|.|+|++++..+.+. +++|.+|..... +......+...... .........|.++++|+.+.++--.
T Consensus 186 ~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 186 EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECCCCCEEEEecCC
Confidence 2344467899999999999877655 889999998873 33222222111111 2344567788999999843333334
Q ss_pred CCcEEEEECCc---ceEEEEee-cCCcceEEEEEecCCCEEEEEECCC-cEEEEECCCC
Q 002407 722 DSRIRVVDGID---LVHKFKGF-RNTNSQISASLTANGRYVVSASEDS-YVYVWKYEAE 775 (927)
Q Consensus 722 Dg~I~VwD~~~---~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg-~I~IWdl~s~ 775 (927)
...|.+|.... .+...... .+......+.|++.|++|+++..++ +|.+|.++..
T Consensus 265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 45788886322 12222222 2333357889999999999998654 5999988754
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.83 E-value=3.3e-06 Score=95.59 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=160.6
Q ss_pred EEEEeCC----CcEEEEeC--CCCcEE--EEEecCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCC--CcEE--E
Q 002407 581 LLSSSMD----KTVRLWHL--SSKTCL--KIFSHSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPE--RQVV--D 644 (927)
Q Consensus 581 L~Sgs~D----gtV~lWDl--~t~~~~--~~~~h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t--~~~v--~ 644 (927)
++.|+.. +.|.+|++ .+++.. ..+........++++| ++++|++... ++.|..|.+.. +++. .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5566666 68998888 445443 2333556677899999 8999998877 46899998876 3433 2
Q ss_pred ecc-CCCcEEEEEECCCCCEEEEEEC-CCeEEEEECCC-Ceeeeecccc-c---ccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 645 WND-LHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSE-NKLQQKSPIN-L---QNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 645 ~~~-~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~-~~~~~~~~i~-~---~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
... .......++++|++++|+++.. +|.|.+|++.. +.+....... . .....+.......++.|+|+++.+++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 222 4457788999999999999874 89999999987 4443332211 0 00111233456789999999986555
Q ss_pred EEECCCcEEEEECCc----ceE--EEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCC-cccccccceeee
Q 002407 718 VTSADSRIRVVDGID----LVH--KFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESR-PSRSKSITVTHS 789 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~----~~~--~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~-~~~~~~~~~~~~ 789 (927)
+.-....|++|+... +.. .+.. ........++|+|++++++...+ ++.|.+|++..... ......+....
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~- 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP- 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-
T ss_pred EecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-
Confidence 555667899998532 222 2222 33445678999999999877764 67799999983221 11111111000
Q ss_pred eeeecC--CCeEEEEecCCce-eEEeecCCceeeccc--cCCCCCcceeccCCCcccCcceeeecCCCCeEEEecccccc
Q 002407 790 YEHFHC--QDVSVAIPWPGVG-DTWGLQDTYLDEFST--ANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFF 864 (927)
Q Consensus 790 ~~~~~~--~~v~vavs~~g~~-~i~~~~d~~i~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~ 864 (927)
..+.. ....++++.+|.. ++.+.....+..+.. ..+....+..+. .....-..++|+|+|++|+.+.+ .
T Consensus 239 -~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~---~ 312 (345)
T PF10282_consen 239 -EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQ---D 312 (345)
T ss_dssp -TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-TTSSEEEEEET---T
T ss_pred -ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeCCCCEEEEEec---C
Confidence 00111 1223445555554 333334444444443 112222221111 11122345779999999999762 3
Q ss_pred CccccccC
Q 002407 865 DRISATWP 872 (927)
Q Consensus 865 d~~v~~W~ 872 (927)
...+.++.
T Consensus 313 s~~v~vf~ 320 (345)
T PF10282_consen 313 SNTVSVFD 320 (345)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 34455554
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.83 E-value=2.1e-07 Score=99.12 Aligned_cols=279 Identities=18% Similarity=0.299 Sum_probs=173.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++.|...+.+..+.. +.++.++...+....|...|..+-|+-.-.++++.+.|..+.---.+.+..+..........
T Consensus 81 ~~L~vg~~ngtvtefs~-sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t 159 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFAL-SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS 159 (404)
T ss_pred eEEEEEEecceEEEEEh-hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC
Confidence 45788888888888864 34556666667778999999999999999999999999877544444444433321100000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.... +-.+...+...+.+.. ..++...-.++.++.+|.+.+++++|.+. +.
T Consensus 160 ~~~~--------d~~~~fvGd~~gqvt~--------------------lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~ 211 (404)
T KOG1409|consen 160 ALQF--------DALYAFVGDHSGQITM--------------------LKLEQNGCQLITTFNGHTGEVTCLKWDPGQRL 211 (404)
T ss_pred CCce--------eeEEEEecccccceEE--------------------EEEeecCCceEEEEcCcccceEEEEEcCCCcE
Confidence 0000 0001111111222111 13344455788899999999999999997 88
Q ss_pred EEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--ecc---------
Q 002407 581 LLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WND--------- 647 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~--------- 647 (927)
|++|..|..|.+||+..++- ...+.|.+.|..+...+ .-+.+++++.||.|-+|+++...... |..
T Consensus 212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~q 290 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQ 290 (404)
T ss_pred EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCc
Confidence 99999999999999976543 34455999999999888 77889999999999999987643321 111
Q ss_pred -------------------CC-----CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 648 -------------------LH-----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 648 -------------------~~-----~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
|+ ..+...+-+ ......+-+..-.+++.|.-...+....+.++ .........|
T Consensus 291 pffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~L--A~phei~tgI 367 (404)
T KOG1409|consen 291 PFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPL--AIPHEIKTGI 367 (404)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCCCcc--ccccccccce
Confidence 00 011111111 11122222233345555543322222211000 0112334568
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCcce
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLV 734 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~ 734 (927)
+.+.+...-. +|++++.|..|+|||.+...
T Consensus 368 tamhlqetlg-lLvTsG~~Rvi~iwd~~~v~ 397 (404)
T KOG1409|consen 368 TAMHLQETLG-LLVTSGTDRVIKIWDVRSVC 397 (404)
T ss_pred eEEEhhhhcc-ceeecCCceEEEEEechhhh
Confidence 8888877654 89999999999999976543
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=6.5e-07 Score=104.17 Aligned_cols=211 Identities=12% Similarity=0.115 Sum_probs=129.7
Q ss_pred ecCCCceEEEccCCCCEEEEEecCCc-E--E-EEEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE
Q 002407 554 ALSDKPICSFQGHLDDVLDLSWSKSQ-H--L-LSSSMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 554 ~~s~k~i~~l~gH~~~V~~l~~spd~-~--L-~Sgs~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs 627 (927)
+..+.....+......+..-.|+||+ . + ++...++ .|.+.++.+++..+...........+|+| |++.|+..+
T Consensus 171 d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s 249 (428)
T PRK01029 171 DYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFIS 249 (428)
T ss_pred cCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEE
Confidence 34444445555566667788999993 2 2 2444443 58888999887766655566667789999 998887655
Q ss_pred C-CC----cEEEEeCCC---CcEEEeccCC-CcEEEEEECCCCCEEEEEE-CCCeEEEE--ECCC-Ceeeeecccccccc
Q 002407 628 L-DA----KVRIWSIPE---RQVVDWNDLH-EMVTAACYTPDGQGALVGS-YKGSCHLY--NTSE-NKLQQKSPINLQNK 694 (927)
Q Consensus 628 ~-Dg----~I~IWDl~t---~~~v~~~~~~-~~V~sla~spdg~~l~tgs-~Dg~I~Iw--Dl~~-~~~~~~~~i~~~~~ 694 (927)
. +| .+.+|++.. ++........ ......+|+|||+.|+..+ .+|...|| ++.. +.....+
T Consensus 250 ~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l------- 322 (428)
T PRK01029 250 DRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL------- 322 (428)
T ss_pred CCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe-------
Confidence 3 23 344577765 3333443332 3456789999999888765 45654444 4432 1111111
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECC--CcEEEEECCcceE-EEEeecCCcceEEEEEecCCCEEEEEEC---CCcEE
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSAD--SRIRVVDGIDLVH-KFKGFRNTNSQISASLTANGRYVVSASE---DSYVY 768 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~D--g~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~---Dg~I~ 768 (927)
......+....|+|+|+.++++...+ ..|.+||...... .+.. ....+....|+|||++|+.... ...|+
T Consensus 323 --t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 323 --TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred --ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 12334567889999998444444333 4689999643322 2221 1234567899999998875543 34688
Q ss_pred EEECCCCC
Q 002407 769 VWKYEAES 776 (927)
Q Consensus 769 IWdl~s~~ 776 (927)
+|++.++.
T Consensus 399 ~vdl~~g~ 406 (428)
T PRK01029 399 LISLITKK 406 (428)
T ss_pred EEECCCCC
Confidence 88887653
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.83 E-value=2.1e-06 Score=95.83 Aligned_cols=279 Identities=15% Similarity=0.180 Sum_probs=173.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCc---------------EEEEecCcCcccceeecccccCccccEE-EEccCCCCCeecc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCV---------------IHVWQVVESERKGELLEKQEDGHLNMLL-LANGSPEPTSLSP 520 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~Dgt---------------VrVWdv~~~~~~~~l~~~~~~~~~~~v~-~v~~spd~~~la~ 520 (927)
..|.-+.|||.++||.|-+.... +.|||+.++..+..+...... ...+ .+.|+.+..+++-
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---YLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---ccccceeeeeecchhhhh
Confidence 35889999999999999765544 899999998877665321111 1122 4455555544443
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEE-----EeCCCcEEE
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLS-----SSMDKTVRL 592 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~S-----gs~DgtV~l 592 (927)
.... .+...... -.+...+...++ ...|....|+|. ..|+. ...++++++
T Consensus 149 vv~~-sl~i~e~t-------------------~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i 206 (561)
T COG5354 149 VVGS-SLYIHEIT-------------------DNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRI 206 (561)
T ss_pred hccC-eEEEEecC-------------------CccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEE
Confidence 2111 11111000 001112222222 345777788875 23443 456788999
Q ss_pred EeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEE-----------CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 593 WHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS-----------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 593 WDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs-----------~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
|.+..+..+.+-. ....=..+.|++ .+++|+.-- ....+.|+++....+.......+.|...+|.|.
T Consensus 207 ~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~ 285 (561)
T COG5354 207 LSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPL 285 (561)
T ss_pred EEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeeccc
Confidence 9999777665543 233334577887 676665431 124588888886655544477899999999998
Q ss_pred CCEEEEE--ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCcceE
Q 002407 661 GQGALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD---SRIRVVDGIDLVH 735 (927)
Q Consensus 661 g~~l~tg--s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D---g~I~VwD~~~~~~ 735 (927)
++.+++. .+.-.+.++|++.+ +...+ ....=+.+.|+|.+. ++++++-| |.|-+||......
T Consensus 286 S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-----------Pe~~rNT~~fsp~~r-~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 286 SSRFAVISGYMPASVSVFDLRGN-LRFYF-----------PEQKRNTIFFSPHER-YILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred CCceeEEecccccceeecccccc-eEEec-----------CCcccccccccCccc-EEEEecCCccccceEEeccCCceE
Confidence 8876654 57888999999887 33322 223334567999887 56665544 7899999654433
Q ss_pred EEEeecCCcceEEEEEecCCCEEEEEE------CCCcEEEEECCCC
Q 002407 736 KFKGFRNTNSQISASLTANGRYVVSAS------EDSYVYVWKYEAE 775 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~~Lasgs------~Dg~I~IWdl~s~ 775 (927)
..... ......-+.|+||++++.+.. .|..|.||++...
T Consensus 353 ~~~~~-~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 353 VAGAF-NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEEe-ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 33222 122344568999999988764 3788999999764
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.79 E-value=3.3e-06 Score=106.15 Aligned_cols=305 Identities=15% Similarity=0.176 Sum_probs=191.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEE----ecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVW----QVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVW----dv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
..+.|.++.|-++...|+.+..+|.|.+. +..+.. .+. -......|.+++||||..+++.....+.+...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~----VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEI----VGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEE----EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 433322 111 12334678899999999988887776655433
Q ss_pred cccc-cccccccccCcccccceE---eec-----C---CCc--------------eEEEccCCCCEEEEEecCC-cEEEE
Q 002407 531 RRGR-SINRKSLSLDHMVVPETV---FAL-----S---DKP--------------ICSFQGHLDDVLDLSWSKS-QHLLS 583 (927)
Q Consensus 531 ~~~~-~~~~~~~~~~~~~~~~~v---~~~-----s---~k~--------------i~~l~gH~~~V~~l~~spd-~~L~S 583 (927)
...- .+....+..+.....+.+ |.- . +|. ...+. +.+.-..|+|-.| .++++
T Consensus 148 t~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred eccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 3222 222222222222111111 000 0 010 11122 4445678899999 55666
Q ss_pred EeC---C---CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC---CCcEEEEeCCCCc---EEE-eccCC
Q 002407 584 SSM---D---KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQ---VVD-WNDLH 649 (927)
Q Consensus 584 gs~---D---gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl~t~~---~v~-~~~~~ 649 (927)
.+. . ..||||+-+ |....+-. -.+--.+++|.| .|++|++... ...|.+|.-+.-+ ..- .....
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCC
Confidence 553 2 479999976 55443333 233345789999 9999888765 2346677643322 111 11234
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..|..+.|++|+..|++...|. |.+|-..+...-.+..+.. .....+..+.|+|..+..|.+.+.++.+..++
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~------~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF------SSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc------cCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 5899999999999999977555 9999998877555544322 23334555999998887788887767766654
Q ss_pred -----------------------CCcce-EEE-----------EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 730 -----------------------GIDLV-HKF-----------KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 730 -----------------------~~~~~-~~~-----------~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.++. ..| .......+|..++|++++..+++-..||.|.+|....
T Consensus 378 ~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 378 FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 11110 001 1112356788999999998899999999999998655
Q ss_pred C
Q 002407 775 E 775 (927)
Q Consensus 775 ~ 775 (927)
.
T Consensus 458 ~ 458 (928)
T PF04762_consen 458 K 458 (928)
T ss_pred C
Confidence 3
No 263
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5.9e-06 Score=89.45 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCC----cEEEEEecCCceEEEEEccCCCCEEEEEECC---CcEEEEeCCC--CcEEEe--ccC-CCcEEE
Q 002407 587 DKTVRLWHLSSK----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AKVRIWSIPE--RQVVDW--NDL-HEMVTA 654 (927)
Q Consensus 587 DgtV~lWDl~t~----~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---g~I~IWDl~t--~~~v~~--~~~-~~~V~s 654 (927)
++-|++|++.+. ..+........++-|+|+| +.++|.++-.+ |.|.-|.++. |++... ... ....+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 567999999843 2344445788899999999 88888887654 6677777764 554332 222 234589
Q ss_pred EEECCCCCEEEEEEC-CCeEEEEECCC-Ceeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSY-KGSCHLYNTSE-NKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~~l~tgs~-Dg~I~IwDl~~-~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++++++|++++++.. .|.|.++-++. +.+....+....... .+....-+....|.|+++.++++.-.-.+|.+|+
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 999999999888765 57899999966 444333222111000 0011122778889999985444445567899998
Q ss_pred CCcceE----EEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 002407 730 GIDLVH----KFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAE 775 (927)
Q Consensus 730 ~~~~~~----~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~ 775 (927)
..+... .... ........+.|+|++++....++ +++|.+|.++..
T Consensus 174 ~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 174 LDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 543211 1111 23344567999999999887774 899999999875
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.2e-06 Score=96.26 Aligned_cols=175 Identities=12% Similarity=0.155 Sum_probs=102.2
Q ss_pred CcEEEEeCCCCcEEEEEec--C-Cce-EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-CcEEEEEECCCCC
Q 002407 588 KTVRLWHLSSKTCLKIFSH--S-DYV-TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-EMVTAACYTPDGQ 662 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h--~-~~V-~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~ 662 (927)
..++|||+.+|...+.|.. . ..+ .-+.|+. |++|++--.. ..|.||+...-.++.....+ ..|....|+|.+.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN 359 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcc
Confidence 5699999999999888862 2 222 3467898 9999887666 57999998876655543333 5788899999987
Q ss_pred EEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-E---------CCCcEEE
Q 002407 663 GALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-S---------ADSRIRV 727 (927)
Q Consensus 663 ~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s---------~Dg~I~V 727 (927)
.||-=+.. ..+.|..+.+++.+.... -+.-.=..+.|..+|. +|.+- . .-..+.|
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~n---------lfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKN---------LFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeecc---------ceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEE
Confidence 76643221 234455554444443321 1111122345666665 33321 1 1112344
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC---CCcEEEEECCC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE---DSYVYVWKYEA 774 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~---Dg~I~IWdl~s 774 (927)
+..++.............+..++|-|.|..+++-+. ..++.+|.+++
T Consensus 430 frireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 430 FRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 443332222222333556888999999988776543 23466666653
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.78 E-value=1.8e-05 Score=88.69 Aligned_cols=277 Identities=13% Similarity=0.060 Sum_probs=164.0
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCcCcccceeeccccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~----------DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
++|.+.+..+.++..... .-..+- .+ +||||+.|+.+.. +..|.|||+.+.+...++.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~-----~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~- 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD-----GGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG- 98 (352)
T ss_pred ceEEEEECCCCEEEEEEE-----ccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-
Confidence 788888877766554433 212222 24 9999998877755 78999999999887766531100
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ- 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~- 579 (927)
|... .......++++|++
T Consensus 99 ----------------------------------------------------------p~~~---~~~~~~~~~ls~dgk 117 (352)
T TIGR02658 99 ----------------------------------------------------------PRFL---VGTYPWMTSLTPDNK 117 (352)
T ss_pred ----------------------------------------------------------chhh---ccCccceEEECCCCC
Confidence 0000 01122356788884
Q ss_pred EEEEEe-C-CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEE----EeccC-CCc
Q 002407 580 HLLSSS-M-DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV----DWNDL-HEM 651 (927)
Q Consensus 580 ~L~Sgs-~-DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v----~~~~~-~~~ 651 (927)
+|+... . +..|-+.|+.+++.+..+.-.+...-...++ +..+ +-+.||......+.+ ++.. ..+.. +..
T Consensus 118 ~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e-~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 118 TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN-DTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred EEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC-CccE--EEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 555554 2 6899999999999999887544333333332 2222 334566655543322 2211 11111 000
Q ss_pred E-EEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeeccccccc---ccccCCCCCeEEEEEcCCCCcEEEEEE------
Q 002407 652 V-TAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN---KKKRSHQRKITGFQFAPGSSSEVLVTS------ 720 (927)
Q Consensus 652 V-~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~---~~~~~h~~~Vtsl~fspdg~~~Llsgs------ 720 (927)
+ ..-.|.+ +|+++.+... |.|.+.|+..........+.... .+..-....+.-++++|+++.+++...
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t 273 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT 273 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence 0 0013455 8888888777 99999997654433322221110 000123344455999999885554332
Q ss_pred ---CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCcccc
Q 002407 721 ---ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 721 ---~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~~ 781 (927)
..+.|.++|........... -...+..++++||++ +|++.. .++.|.|+|..+.+.....
T Consensus 274 hk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 274 HKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 22579999976655544433 245688999999999 887666 5788999999987665443
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=6.2e-07 Score=102.71 Aligned_cols=272 Identities=14% Similarity=0.180 Sum_probs=182.2
Q ss_pred CCCeEEEccCceEEEEeccCcc----------cccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCK----------DLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~----------~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
.+.++++|..+|.+++....+. ..+.+.+.|+|.||.+.|.-+.|+...+.|-|...+|.|.||-+-.+.
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs 104 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS 104 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeeccc
Confidence 3456778888888777755432 233566779999999999999999999999999999999999998887
Q ss_pred ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCC
Q 002407 490 RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDD 569 (927)
Q Consensus 490 ~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~ 569 (927)
...++. .......|.++.|..+|..++....++.+..... .... +|. + .+++ .-
T Consensus 105 W~EEMi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv---------dGNR------Iwg---K---eLkg--~~ 158 (1189)
T KOG2041|consen 105 WCEEMI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV---------DGNR------IWG---K---ELKG--QL 158 (1189)
T ss_pred HHHHHh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee---------ccce------ecc---h---hcch--he
Confidence 655543 3456678899999999999988877776633211 1111 111 1 1111 11
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCC-------cEEEEE----e-cCCceEEEEEcc-------CCCCEEEEEECC
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-------TCLKIF----S-HSDYVTCIQFNP-------VDDRYFISGSLD 629 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-------~~~~~~----~-h~~~V~~v~fsp-------~dg~~L~sgs~D 629 (927)
...+.|++| ..++.+-..|.+.++|.+.. .+.... . ....|..+.|.. .+...|+.+...
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 236789999 66777778899999997643 221111 1 233466666641 156689999999
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC---------CeEEEEECCCCeeeeecccccccccccCCC
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK---------GSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
|.+.|-.-.+......++..-.+..+.|+++|..|++++.+ +.|.+|..- |.....+ +...
T Consensus 239 Gr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtl---------kvpg 308 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTL---------KVPG 308 (1189)
T ss_pred ceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEE---------ecCC
Confidence 99887654443333344445778899999999999998764 245555443 3344433 3566
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..|+++.|-..| +-++-.-|+.|++-+
T Consensus 309 ~~It~lsWEg~g--LriA~Avdsfiyfan 335 (1189)
T KOG2041|consen 309 SCITGLSWEGTG--LRIAIAVDSFIYFAN 335 (1189)
T ss_pred ceeeeeEEcCCc--eEEEEEecceEEEEe
Confidence 789999998755 344445566666544
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.77 E-value=1.2e-06 Score=91.92 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=134.9
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE--EEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVD 644 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~--~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~ 644 (927)
..++.|++. ..++++-.+|.+.+-+.......+ ..+ |.-.++...|+-.+.+++++|+.|+.+..||++. ++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457788876 568888888998866665554444 334 9999999999988889999999999999999993 33332
Q ss_pred --eccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 645 --WNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 645 --~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
...|...|.++.-+| .+.+|++|+.|-.|++||.++ ++.+.. ....+.|..+.++|.-...+++++
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~----------~~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK----------AKVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------CccccceEEEEecchhhhHHHHHH
Confidence 334567888888776 678999999999999999984 444433 245588999999997554556666
Q ss_pred CCCcEEEEECCcceE----EEEee-cCCcceEEEEEecCCCEEEEEE-CCCcEE-EEECCCCC
Q 002407 721 ADSRIRVVDGIDLVH----KFKGF-RNTNSQISASLTANGRYVVSAS-EDSYVY-VWKYEAES 776 (927)
Q Consensus 721 ~Dg~I~VwD~~~~~~----~~~~~-~~~~~v~sv~fspdg~~Lasgs-~Dg~I~-IWdl~s~~ 776 (927)
.-.-.+|.+..+... .+..+ .+..-.....|.....+|+|++ .|..|+ +|-.-++.
T Consensus 274 Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 274 MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred HhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 666666766332211 12111 2233333444544445688865 577755 77655543
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=2.5e-08 Score=110.66 Aligned_cols=247 Identities=14% Similarity=0.181 Sum_probs=166.0
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+.||+..|..++--.+.+-+++++.|++|++|.+.......
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~------------------------------------ 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI------------------------------------ 771 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc------------------------------------
Confidence 46788999999999887777889999999999999985421000
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-- 605 (927)
-+..+..+++.|+.+|.++.|-.+ ..++ +.|+-|.+||.--++++..+.
T Consensus 772 --------------------------~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 772 --------------------------GTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred --------------------------ccceeeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcC
Confidence 011345577889999999999877 3444 558999999988777665332
Q ss_pred -cCCceEEEEEccC-CCCEEEEE-ECCCcEEEEeCCCCcEEEe------ccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 606 -HSDYVTCIQFNPV-DDRYFISG-SLDAKVRIWSIPERQVVDW------NDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 606 -h~~~V~~v~fsp~-dg~~L~sg-s~Dg~I~IWDl~t~~~v~~------~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
..+.+..+..-|. +..+++.+ +...+|+++|.+..+.... ......+.+++.-+.|++++++-..|.|.+.
T Consensus 824 pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEE
Confidence 3344444444442 34455554 6788999999998765431 1223578899999999999999999999999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE-EECCcceEEEEeecCCcceEEEEEecCC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV-VDGIDLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V-wD~~~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
|.++++.+..+. ........++ .|. .+.++....|.++.| |.....+..++......+..-+ -.-|
T Consensus 904 DaR~G~vINswr---------pmecdllqla-aps-dq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvg 970 (1034)
T KOG4190|consen 904 DARNGKVINSWR---------PMECDLLQLA-APS-DQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVG 970 (1034)
T ss_pred ecCCCceeccCC---------cccchhhhhc-Cch-hHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccC
Confidence 999999776532 2222222222 232 236777778888888 8765555555443222222111 1235
Q ss_pred CEEEEEECCCcEEEEEC
Q 002407 756 RYVVSASEDSYVYVWKY 772 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl 772 (927)
.-|+++.....+.+|.-
T Consensus 971 pSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 971 PSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ceeEEeccCcEEEEEec
Confidence 56777776666777753
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.74 E-value=7.1e-08 Score=119.74 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=151.9
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
+.|-..|.++.-+|. .+.+||+.||.|++|....++.+..+. ....|+.+.|+. .|+.+..+..||.+.+|.+...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCCc
Confidence 345567888888886 789999999999999999999888876 458899999999 8999999999999999999876
Q ss_pred cEEEeccCCCcEEEEEECCCCCEEEEEE---CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 641 QVVDWNDLHEMVTAACYTPDGQGALVGS---YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
....+.-|......+.|-. ..+++++ .++.+.+||..-.....-.. ..|...++++++.|... +|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--------~~H~~gaT~l~~~P~~q-lli 2352 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--------TCHDGGATVLAYAPKHQ-LLI 2352 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--------eecCCCceEEEEcCcce-EEE
Confidence 6677777877777777764 4566653 46789999975432221111 48999999999999765 899
Q ss_pred EEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 718 VTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
+|+.+|.|++||.+. +.+.++. ++ ...++++++..|+|+||++.....+...
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence 999999999999643 3333322 33 5678999999999999999886554433
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.73 E-value=1e-05 Score=89.44 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=99.5
Q ss_pred cCCCCEEEEEecCC-cEEEEEeCCC-cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 565 GHLDDVLDLSWSKS-QHLLSSSMDK-TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sgs~Dg-tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
+|.+.|.-..+.-+ ..++.|..|| .|-|+|..+++..+....-+.|.++..+| ++++++.+-....|.+.|+.++.+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 45666766666655 5688899999 89999999998887777888999999999 999999998888899999999987
Q ss_pred EEeccC-CCcEEEEEECCCCCEEEEEECCC----eEEEEECCCCeeee
Q 002407 643 VDWNDL-HEMVTAACYTPDGQGALVGSYKG----SCHLYNTSENKLQQ 685 (927)
Q Consensus 643 v~~~~~-~~~V~sla~spdg~~l~tgs~Dg----~I~IwDl~~~~~~~ 685 (927)
...-.. .+.|+.+.|+|+++++|-+--+| .|++||+.+++...
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 654443 36899999999999999877665 59999998877554
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.73 E-value=7.9e-06 Score=93.61 Aligned_cols=263 Identities=12% Similarity=0.065 Sum_probs=157.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++.+..++.|..++..+++..-.+. +.+ .....+. .++..++.++.++.|..+|..+++.+.+....
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~---~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---- 134 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVD---LDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLS---- 134 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeec---CCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccC----
Confidence 356777777888888877766543221 111 1111122 24667888888999999998887654432100
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+. + ...++ . .++.+
T Consensus 135 -------------------------------------------------------~~-~-----~~~p~----v-~~~~v 148 (377)
T TIGR03300 135 -------------------------------------------------------SE-V-----LSPPL----V-ANGLV 148 (377)
T ss_pred -------------------------------------------------------ce-e-----ecCCE----E-ECCEE
Confidence 00 0 00001 0 13567
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCceE------EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC-----
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYVT------CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE----- 650 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~------~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~----- 650 (927)
+.++.++.|+.||..+++.+..+....... ...+ .+..++.+..++.+..+|+.+++.+-......
T Consensus 149 ~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~ 225 (377)
T TIGR03300 149 VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT 225 (377)
T ss_pred EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC
Confidence 777889999999999999887776433221 1122 12467788888999999999988654222110
Q ss_pred c---EEEEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 651 M---VTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 651 ~---V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
. ...+.-+| .+..+++++.+|.++.||+.+++....... ......... +. .+++++.+|.|
T Consensus 226 ~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-----------~~~~~p~~~--~~-~vyv~~~~G~l 291 (377)
T TIGR03300 226 ELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-----------SSYQGPAVD--DN-RLYVTDADGVV 291 (377)
T ss_pred chhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-----------CCccCceEe--CC-EEEEECCCCeE
Confidence 0 00011111 356788888999999999999887654321 111122222 33 67888899999
Q ss_pred EEEECCcceEEEEeecC-CcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 726 RVVDGIDLVHKFKGFRN-TNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
..+|..+.......... ........+ .+.+|++++.+|.|++||..+++...+
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 99997554433332111 111122222 366899999999999999988766543
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=3e-06 Score=98.65 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=101.2
Q ss_pred EEEEecCCc-EEEEEeC-----CCcEEEEeCCC---CcEEEEEec-CCceEEEEEccCCCCEEEEEE-CCCcEEEE--eC
Q 002407 571 LDLSWSKSQ-HLLSSSM-----DKTVRLWHLSS---KTCLKIFSH-SDYVTCIQFNPVDDRYFISGS-LDAKVRIW--SI 637 (927)
Q Consensus 571 ~~l~~spd~-~L~Sgs~-----DgtV~lWDl~t---~~~~~~~~h-~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IW--Dl 637 (927)
....|+||+ .|+..+. +-.+.+|++.. +........ .......+|+| |++.|+..+ .+|...|| ++
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 456788883 5554432 22345577765 233333332 23456789999 998777665 46655555 44
Q ss_pred CC--CcEEEeccCCCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 638 PE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 638 ~t--~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
.. +...........+....|+|||+.|+....+ ..|.+||+.+++..... .....+....|+|++
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----------~~~~~~~~p~wSpDG 382 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----------TSPENKESPSWAIDS 382 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----------CCCCCccceEECCCC
Confidence 32 3333333444567788999999998876553 36999999888754321 122345678999998
Q ss_pred CcEEEEEEC--CCcEEEEECCcc-eEEEEeecCCcceEEEEEecC
Q 002407 713 SSEVLVTSA--DSRIRVVDGIDL-VHKFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 713 ~~~Llsgs~--Dg~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspd 754 (927)
..+++++.. ...|+++|.... ...+. .....+...+|+|-
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAF 425 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCC
Confidence 854444443 356777885432 22222 12333455677664
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=2.4e-05 Score=91.13 Aligned_cols=207 Identities=15% Similarity=0.209 Sum_probs=146.6
Q ss_pred ceeeeeEeecCCCCEEEEEEcCCC------------CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccC
Q 002407 445 ALYKCQEIQAHNGSIWSIKFSLDG------------RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGS 512 (927)
Q Consensus 445 ~l~~~q~L~gH~~~I~~vafSpdG------------~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~s 512 (927)
.+..+|.+.-|...|+.|.|.|-. -+||++...|.|.|||+..+....
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-------------------- 103 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-------------------- 103 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh--------------------
Confidence 344557888999999999998731 267888889999999986543222
Q ss_pred CCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-----cEEEEEeCC
Q 002407 513 PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-----QHLLSSSMD 587 (927)
Q Consensus 513 pd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-----~~L~Sgs~D 587 (927)
.+..|.++|.+++|-+. ..|++-...
T Consensus 104 -------------------------------------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 104 -------------------------------------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGS 134 (1062)
T ss_pred -------------------------------------------------hhcCCCcchhheeeeeccCcchheeEEecCC
Confidence 23457778888888763 457777888
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-------CcEEEeccC-CC--------
Q 002407 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-------RQVVDWNDL-HE-------- 650 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-------~~~v~~~~~-~~-------- 650 (927)
.+|.+|+..+|+....+. ......|+.+.|.+.+.|+.-+..|.|.+-+.-. ++..++... .+
T Consensus 135 s~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 135 STLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred cEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 999999999999988877 4456677999999999988888888888776522 222222111 00
Q ss_pred -----------------cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 651 -----------------MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 651 -----------------~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
....++|+|.-+.++.......+.++|++-...+....++ .+.+.-+.+.|+.+
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie---------r~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE---------RGGAKFVDVLPDPR 285 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec---------cCCcceeEeccCCC
Confidence 0123567887777777777888999999888777765532 23344456666643
Q ss_pred c-EEEEEECCCcEEEEE
Q 002407 714 S-EVLVTSADSRIRVVD 729 (927)
Q Consensus 714 ~-~Llsgs~Dg~I~VwD 729 (927)
+ .|++.-.||.+.+|-
T Consensus 286 rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cceEEEEecCCeEEEEE
Confidence 3 567777888888875
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=1.5e-05 Score=102.14 Aligned_cols=207 Identities=13% Similarity=0.135 Sum_probs=133.6
Q ss_pred EEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEec-----------------CCceEEEEEccCCCCEEEEEECCC
Q 002407 570 VLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH-----------------SDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h-----------------~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
...|++.++ +.|+.+. ..+.|+++|+.++........ -...+.|+|+|.++.++++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 466788876 5555544 457799999877653322110 123468999995566677777888
Q ss_pred cEEEEeCCCCcEEEeccC---------------CCcEEEEEECCCCCEEE-EEECCCeEEEEECCCCeeeeecccc----
Q 002407 631 KVRIWSIPERQVVDWNDL---------------HEMVTAACYTPDGQGAL-VGSYKGSCHLYNTSENKLQQKSPIN---- 690 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~---------------~~~V~sla~spdg~~l~-tgs~Dg~I~IwDl~~~~~~~~~~i~---- 690 (927)
.|++||..++.+..+... -.....++++|+++.|+ +-+.++.|++||+.++.......-.
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 999999988765432110 12456799999998554 4556789999999876532111000
Q ss_pred cccccc--------cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-eEEEEeec------------CCcceEEE
Q 002407 691 LQNKKK--------RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGFR------------NTNSQISA 749 (927)
Q Consensus 691 ~~~~~~--------~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~------------~~~~v~sv 749 (927)
...... ........++++.++|. ++++-..++.|++||.... ...+.+.. .......+
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 000000 01122346889999886 7788888999999996432 22222211 11245678
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 750 SLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 750 ~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+++++|+++++-+.++.|++||+.+...
T Consensus 865 avd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 865 ALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999989888999999999988653
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.65 E-value=3.7e-05 Score=85.23 Aligned_cols=186 Identities=12% Similarity=0.146 Sum_probs=137.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEE-e-----------cCCceEEEE-EccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIF-S-----------HSDYVTCIQ-FNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~-~-----------h~~~V~~v~-fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
+.-+.-+..|.|.+||..+....+.- . ...+..-+. |++.+|++++..+. |+..|.+...+-.++.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv 356 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV 356 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc
Confidence 34444556677999998876543321 1 001111122 56667899988886 7788877766666553
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCC-eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg-~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.+...|.-..+.-+++.++.|..|| .+-|||..+++.... ...-+.|.++..+|+|+ .++++.....
T Consensus 357 -~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~----------e~~lg~I~av~vs~dGK-~~vvaNdr~e 424 (668)
T COG4946 357 -GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI----------EKDLGNIEAVKVSPDGK-KVVVANDRFE 424 (668)
T ss_pred -CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe----------eCCccceEEEEEcCCCc-EEEEEcCceE
Confidence 4455688888888888999999999 899999999876544 35668899999999987 6888888888
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC----cEEEEECCCCCC
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS----YVYVWKYEAESR 777 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg----~I~IWdl~s~~~ 777 (927)
|.++|..+............-|+.+.|+|++++||-+--+| .|+++|+.+++.
T Consensus 425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999776666666666678899999999999999876554 589999988653
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=5.2e-07 Score=98.28 Aligned_cols=105 Identities=21% Similarity=0.329 Sum_probs=88.6
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEECCC
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPD 660 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~spd 660 (927)
..+....+.+|.+..+.+..++.|-..++.|+|+| |+++|+++..|..|++-.....-.+. .++|...|..++..++
T Consensus 127 kagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred ecCCceeeeeecccccCcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 34555677788887788888889999999999999 99999999999999998887766554 4567889999999875
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
. .|++|+.|++|++||+.+++.+..+.+
T Consensus 206 ~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 206 Y-LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred c-eeeecCCCCcEEEEecccCCcccccch
Confidence 4 599999999999999999998876543
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=7.2e-07 Score=99.38 Aligned_cols=270 Identities=13% Similarity=0.163 Sum_probs=176.2
Q ss_pred CCCCeEEEccCceEEEEeccCc--ccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 419 DSQDVSFHGQERVRVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s--~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
|....+.+.+.+.+|++|..+. .+.....+.-++++|+.+|..+.|-.+.++++++ ||.|++||---+..+.++..
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 3445567889999999998764 2333334556889999999999999999999986 89999999754443332210
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
.+. .+-.+.|.|+.--
T Consensus 823 apk----------------------------------------------------------------~~a~~~ikcl~nv 838 (1034)
T KOG4190|consen 823 APK----------------------------------------------------------------EGAGGNIKCLENV 838 (1034)
T ss_pred Ccc----------------------------------------------------------------cCCCceeEecccC
Confidence 000 0111223333211
Q ss_pred CCcEEEE-EeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccC
Q 002407 577 KSQHLLS-SSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDL 648 (927)
Q Consensus 577 pd~~L~S-gs~DgtV~lWDl~t~~~~~~~~------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~ 648 (927)
....++. ++...+|+++|.+..+....+. ....+.+++..+ .|+.++++-..|.|.+.|.++|+++. |...
T Consensus 839 ~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 839 DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 1133444 4788999999999887766654 345688999999 99999999999999999999999875 4444
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEE-EECCCCeeeeecccccccccccCCCCCeEEEEEc-CCCCcEEEEEECCCcEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHL-YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA-PGSSSEVLVTSADSRIR 726 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~I-wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs-pdg~~~Llsgs~Dg~I~ 726 (927)
+-....++ .|..+.++....|.++.+ |-.-.+....+... ...+. .|. .-|+ -+++......+.
T Consensus 918 ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp---------ppepa---hflqsvgp-SLV~a~~Gn~lg 983 (1034)
T KOG4190|consen 918 ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP---------PPEPA---HFLQSVGP-SLVTAQNGNILG 983 (1034)
T ss_pred cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC---------CCcch---hhhhccCc-eeEEeccCcEEE
Confidence 43333333 355667777778888888 87766654433221 11111 111 1133 467777777788
Q ss_pred EEEC------CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 727 VVDG------IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 727 VwD~------~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
||-. ...+.++......+..++++.-|-..-++.|.+.|.|.+
T Consensus 984 VYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 984 VYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 8852 122333343444556677777777777778888888875
No 278
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=2.4e-07 Score=97.17 Aligned_cols=262 Identities=18% Similarity=0.252 Sum_probs=152.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc-ccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~-~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
....|+++.|...|.|||+|...|.|.+|.-.... +...+... ..+ +.++-.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~te-FQs---------he~EFDY---------------- 78 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTE-FQS---------HELEFDY---------------- 78 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhh-hcc---------cccchhh----------------
Confidence 35679999999999999999999999999754332 00110000 000 0000000
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSD 608 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~ 608 (927)
+..+ .-...|..|.|..+ ..++..+.|++|++|.+.......+.. .+.
T Consensus 79 --------------------------LkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~ 131 (460)
T COG5170 79 --------------------------LKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSD 131 (460)
T ss_pred --------------------------hhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhcccccc
Confidence 0000 01245788888765 468888999999999987653221111 111
Q ss_pred ceEEEEEccCCCCE-----EEE--EEC-CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 609 YVTCIQFNPVDDRY-----FIS--GSL-DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 609 ~V~~v~fsp~dg~~-----L~s--gs~-Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
.++ +|..|.+ |.- .+. |..|.. ....+....|...|.++.|..|...++++ .|-.|.+|++.-
T Consensus 132 ~~~----~~~~g~~~s~~~l~lprls~hd~iiaa----~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i 202 (460)
T COG5170 132 SFH----SPMGGPLTSTKELLLPRLSEHDEIIAA----KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEI 202 (460)
T ss_pred ccc----cccCCCcCCHHHhhcccccccceEEEe----ccceeccccceeEeeeeeecCchheeeec-cceeeeeccccc
Confidence 111 1101100 000 000 111111 11222335667789999999998887776 577899998865
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc------eEEE----Eee------cCCc
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL------VHKF----KGF------RNTN 744 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~------~~~~----~~~------~~~~ 744 (927)
......+ +.+.+.+......-|++..|+|....++...+..|.|++-|++.. ...+ .+. .-..
T Consensus 203 ~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivs 281 (460)
T COG5170 203 IDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVS 281 (460)
T ss_pred cCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhh
Confidence 3322211 111111112234568899999988888999999999999996521 1111 110 1134
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
.|..+.|+++|+||++-+. -+|+|||++....|..
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik 316 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK 316 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence 5778899999999998764 5799999998776643
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.56 E-value=1.1e-05 Score=83.72 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=131.4
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--EE--EeccCCCcEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ--VV--DWNDLHEMVT 653 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~--~v--~~~~~~~~V~ 653 (927)
.+..++.|.++++.++..+...... |. -.+..+.+++ +++++++.+....|..|.++... .+ ......+.-.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee-eccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 4778889999999988765433222 32 2388999999 99999999999999999987632 22 2334446667
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-EEEEEECCCcEEEEECCc
Q 002407 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTSADSRIRVVDGID 732 (927)
Q Consensus 654 sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~Llsgs~Dg~I~VwD~~~ 732 (927)
+..|+.....+|++..||++.|||++......... ...+..|.+.+..+.|++.|.. +|+..-.-+.+.|.|+++
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~----sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI----SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhh----cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 88999999999999999999999998765433221 2223468999999999987654 455555668899999766
Q ss_pred ceEEEEee-------cC-CcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 733 LVHKFKGF-------RN-TNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 733 ~~~~~~~~-------~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
........ .+ ...+...+|+.++.-+.+.+++. ++=|++...
T Consensus 284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred CceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence 43322111 11 23366777877777666665543 556666543
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=2.8e-05 Score=90.22 Aligned_cols=203 Identities=7% Similarity=0.054 Sum_probs=129.1
Q ss_pred cCCCceEEEccCCCCEEEEEecCCc-E-EEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEE-EEC
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKSQ-H-LLSSSMD---KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSL 628 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd~-~-L~Sgs~D---gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~s-gs~ 628 (927)
..+...+.+.... .+....|+|++ . ++..+.+ ..|+++|+.+++..........+....|+| |++.|+. .+.
T Consensus 176 ~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SP-DG~~la~~~~~ 253 (419)
T PRK04043 176 YTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSK-DGSKLLLTMAP 253 (419)
T ss_pred CCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECC-CCCEEEEEEcc
Confidence 3444344343333 77889999994 3 5544443 469999999998777666666677889999 8876654 443
Q ss_pred C--CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 629 D--AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 629 D--g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+ ..|.++|+.+++...+...........|+|||+.|+..+.. + .|+++|+.+++...... .+. .
T Consensus 254 ~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--------~g~--~- 322 (419)
T PRK04043 254 KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--------HGK--N- 322 (419)
T ss_pred CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--------CCC--c-
Confidence 4 45888899888876665555444567899999988777643 3 58888888776543211 011 1
Q ss_pred EEEEEcCCCCcEEEEEECC--------CcEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECC-C--cEEEEE
Q 002407 704 TGFQFAPGSSSEVLVTSAD--------SRIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASED-S--YVYVWK 771 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~D--------g~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g--~I~IWd 771 (927)
...|+|+|+.++++.... ..|.+.|.... ...+... .......|+|||++|+..+.+ + .|.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 248999998555554433 36777774322 2222221 123357899999988776643 2 255666
Q ss_pred CCC
Q 002407 772 YEA 774 (927)
Q Consensus 772 l~s 774 (927)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 654
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.54 E-value=4.5e-05 Score=85.50 Aligned_cols=177 Identities=11% Similarity=0.048 Sum_probs=109.9
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC----------CCcEEEEeCCCCcEEEeccCCCc------
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL----------DAKVRIWSIPERQVVDWNDLHEM------ 651 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~----------Dg~I~IWDl~t~~~v~~~~~~~~------ 651 (927)
++|.+.|..+++.+..+.-...-..+ ++| +++.|+++.. +..|.+||+.+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 89999999999999988744444445 999 8888777655 78899999999998876665333
Q ss_pred --EEEEEECCCCCEEEEEE-C-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 652 --VTAACYTPDGQGALVGS-Y-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 652 --V~sla~spdg~~l~tgs-~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...++++|||++|++.. . +..|.++|+.+++.+.++.+.-.. .......-..+..+.|+....++-..+|+..+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~--~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY--HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc--EEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 34889999999999876 3 688999999999998876531100 00001111112233344322223333333221
Q ss_pred EECCcceEEEEeecC-CcceE-EEEEec-CCCEEEEEECCCcEEEEECCCCC
Q 002407 728 VDGIDLVHKFKGFRN-TNSQI-SASLTA-NGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 728 wD~~~~~~~~~~~~~-~~~v~-sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.....+.. ..++. .-.|.+ +|+++....+ |+|++-|+....
T Consensus 183 -------~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 183 -------KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred -------eeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 11111000 00000 003455 8888877766 999999976643
No 282
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.48 E-value=1.4e-05 Score=91.17 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=144.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEc------c-------------CCCCEEEEEECCCcEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFN------P-------------VDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fs------p-------------~dg~~L~sgs~Dg~I~IW 635 (927)
.+++....||.+++|+...++....|. ..+..++..|. | .+...++-|...|.|.+|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 678999999999999999998887775 34445555552 1 134568888889999999
Q ss_pred eCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 636 SIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 636 Dl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
++..+++...+ .|.+.|.++.++.+-..|.+++.|+.+..|+.........+ ......+.+++.+||+
T Consensus 86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~---------~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW---------KEQKPLVSSLCISPDG 156 (541)
T ss_pred EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee---------ccCCCccceEEEcCCC
Confidence 99999887644 46689999999999999999999999999999998887765 3666778999999997
Q ss_pred CcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC-----CCEEEEE-ECCCcEEEEECCCC
Q 002407 713 SSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN-----GRYVVSA-SEDSYVYVWKYEAE 775 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd-----g~~Lasg-s~Dg~I~IWdl~s~ 775 (927)
. .+++++ ++|++||..+.........|.++|.+++|..+ |.+++++ ..+..|.+|-+...
T Consensus 157 ~-~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 157 K-ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred C-EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 6 555554 67999997655444444456788999999877 6676654 45666889988764
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.47 E-value=6e-05 Score=79.65 Aligned_cols=187 Identities=14% Similarity=0.223 Sum_probs=116.1
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCC-----CCEEEEEECCCcEEEEe
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVD-----DRYFISGSLDAKVRIWS 636 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~d-----g~~L~sgs~Dg~I~IWD 636 (927)
..++|+|| ..||.+...|+|+++|+....+. .+. ....|..|.|.+.. ...|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 46899999 67888888999999998764433 332 33567777776522 22567777888888777
Q ss_pred CCCCc---E--E---Eec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 637 IPERQ---V--V---DWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 637 l~t~~---~--v---~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
+..+. . . ... .....|+++.|+|..+.|++|+.... ..+. .++....+++-.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWR 186 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWR 186 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-------------ccccccCceEEE
Confidence 64321 1 1 111 23568999999999998888875432 0000 013334555555
Q ss_pred EcCCCCcEEEEEECCCcE-------EEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 708 FAPGSSSEVLVTSADSRI-------RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I-------~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
...+.+.+..+...+..+ .+|.......-.........|..+.+||||++||+...+|.|.+|++.+-..
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 555555444444333222 2222111111111123456788999999999999999999999999987543
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=4.7e-07 Score=104.19 Aligned_cols=210 Identities=19% Similarity=0.300 Sum_probs=146.7
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 452 IQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
|.||..+|+.|.|.|... .||+++.|-.|+.||+.....
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------------------------------------- 149 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------------------------------------- 149 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCCc----------------------------------------
Confidence 579999999999999654 899999999999999865421
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-EEEEEe-cC
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-CLKIFS-HS 607 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~ 607 (927)
++..+..-......++|+-. ..+++.+..+.|++||.+.+. ++..+. |.
T Consensus 150 ----------------------------p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v 201 (1081)
T KOG0309|consen 150 ----------------------------PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV 201 (1081)
T ss_pred ----------------------------ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc
Confidence 11112222234456778754 777888888899999998764 445554 88
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEEeccCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKL 683 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~~~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~ 683 (927)
..|+.+.|+......+.+++.|++|+.||.... +..........|....|.|-|+..++--. +..+.+++.++...
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~ 281 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDL 281 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhh
Confidence 899999998766677999999999999998653 33345566678888889997665444222 23555665544332
Q ss_pred e-eecccccccccccCCCCCeEEEEEcCCC---------CcEEEEEECCCcEEEEE
Q 002407 684 Q-QKSPINLQNKKKRSHQRKITGFQFAPGS---------SSEVLVTSADSRIRVVD 729 (927)
Q Consensus 684 ~-~~~~i~~~~~~~~~h~~~Vtsl~fspdg---------~~~Llsgs~Dg~I~VwD 729 (927)
. ..+....+...+.+|...|..+.|-..+ ...|++-+.|..+++|-
T Consensus 282 e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 282 EWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred hhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 2 1122222334456888888877775432 24799999999999997
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.43 E-value=0.00011 Score=84.32 Aligned_cols=188 Identities=11% Similarity=0.032 Sum_probs=117.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE----
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT---- 653 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~---- 653 (927)
++.++.++.++.|..+|..+++.+........+.+.-.. .+..++.+..++.|..||..+++.+-.........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 467888889999999999999988776644444322111 24567778889999999999998765444332211
Q ss_pred --EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC---e-EEEEEcCCCCcEEEEEECCCcEEE
Q 002407 654 --AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK---I-TGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 654 --sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~---V-tsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...+ .+..++++..++.+..+|+.+++......+..... ...... + ....+. +. .+++++.++.++.
T Consensus 183 ~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g--~~~~~~~~~~~~~p~~~--~~-~vy~~~~~g~l~a 255 (377)
T TIGR03300 183 SASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG--RTELERLVDVDGDPVVD--GG-QVYAVSYQGRVAA 255 (377)
T ss_pred CCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCC--CCchhhhhccCCccEEE--CC-EEEEEEcCCEEEE
Confidence 1111 13467888889999999999998765433211000 000000 1 011121 22 6888889999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
||..+....+..... ...... .++..|+.++.+|.|+.+|..+++..
T Consensus 256 ~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 256 LDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEE
Confidence 997655444433211 111122 34667888889999999999887644
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.42 E-value=0.00064 Score=85.95 Aligned_cols=294 Identities=14% Similarity=0.182 Sum_probs=174.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC---C---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 455 HNGSIWSIKFSLDGRYLASAGE---D---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~---D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+...-..|+|-.||.|+|+.+. . ..||||+-+ |..... .....+.-..++|.|.|.++|+......-
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st-----SE~v~gLe~~l~WrPsG~lIA~~q~~~~~- 280 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST-----SEPVDGLEGALSWRPSGNLIASSQRLPDR- 280 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec-----cccCCCccCCccCCCCCCEEEEEEEcCCC-
Confidence 3445567999999999998764 2 579999864 332211 12233334578999999999887431100
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEE----ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE--
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-- 601 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l----~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~-- 601 (927)
..+ .+|.-++-....| ......|..|.|+++ ..|+..- ...|.+|-..+-...
T Consensus 281 ---------------~~V----vFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 281 ---------------HDV----VFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDRVQLWTRSNYHWYLK 340 (928)
T ss_pred ---------------cEE----EEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCCceEEEeeCCEEEEE
Confidence 000 1222233222222 234567999999999 4555544 445999998876532
Q ss_pred EEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeC----CCC----------------cEE----------------
Q 002407 602 KIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PER----------------QVV---------------- 643 (927)
Q Consensus 602 ~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl----~t~----------------~~v---------------- 643 (927)
+.+ .....+..+.|+|.+...|...+.+|.+..+++ ..+ ..+
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~ 420 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSS 420 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhc
Confidence 222 234456669999977888888888777765543 111 111
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee--------ecccc-cccccccCCCCCeEEEEEcCCCCc
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ--------KSPIN-LQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~--------~~~i~-~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
..+..+..|..++|++++..+++-..||.|.+|......... .+... ............+..++|..+..
T Consensus 421 ~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 499 (928)
T PF04762_consen 421 YELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT- 499 (928)
T ss_pred eEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE-
Confidence 123344689999999999889999999999999865433221 11000 00001112345678888887764
Q ss_pred EEEEEEC---CCcEEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 715 EVLVTSA---DSRIRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 715 ~Llsgs~---Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++++... ...|.+++... .............+..+...++...++.-..+|.|+..+.....
T Consensus 500 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 500 LLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 4444443 36777777532 22222222234445555555555556777789999876665543
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.42 E-value=8.3e-05 Score=78.91 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCC----Cc
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLH----EM 651 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~----~~ 651 (927)
.++.+++++.++.|..||..+|+.+..+.....+...... .+..++.+..++.|+.+|..+++++-.. ... ..
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--cccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 3578888899999999999999998888744433222222 4556777778889999999999887542 211 11
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc-CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR-SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~-~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
........++..++++..++.|..+|+.+++.+............. .....+..-....++ .++++..++.+..+|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~ 190 (238)
T PF13360_consen 113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDL 190 (238)
T ss_dssp B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEET
T ss_pred ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeEEEEEC
Confidence 2223333348889999999999999999999987765421100000 001112233333333 6777777776444487
Q ss_pred CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 731 ~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
......+... ...... ....++..|+.++.++.|++||+++++
T Consensus 191 ~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 191 ATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp TTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 7666555332 222222 245677888888899999999999875
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.41 E-value=4.1e-06 Score=88.14 Aligned_cols=238 Identities=17% Similarity=0.246 Sum_probs=139.5
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC------------CCEEEEEEcCCCC--EEEEEeCCCcEEE
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN------------GSIWSIKFSLDGR--YLASAGEDCVIHV 482 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~------------~~I~~vafSpdG~--~LaSgs~DgtVrV 482 (927)
.+....++.+|..+|+|.+|......--.-....++++|. ..|..|.|-.++. .++..+.|.+|++
T Consensus 34 fd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKl 113 (460)
T COG5170 34 FDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKL 113 (460)
T ss_pred eccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeee
Confidence 3444577899999999999975432211111123466665 3678888876543 4555668999999
Q ss_pred EecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEE
Q 002407 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (927)
Q Consensus 483 Wdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~ 562 (927)
|.+.+............. .+.+.-.|.++ ..+.+..........+. ..++.+.
T Consensus 114 WKiyeknlk~va~nnls~-------~~~~~~~g~~~------------------s~~~l~lprls~hd~ii--aa~p~rv 166 (460)
T COG5170 114 WKIYEKNLKVVAENNLSD-------SFHSPMGGPLT------------------STKELLLPRLSEHDEII--AAKPCRV 166 (460)
T ss_pred eeeecccchhhhcccccc-------ccccccCCCcC------------------CHHHhhcccccccceEE--Eecccee
Confidence 998654321110000000 00000001100 00011111110000111 1133333
Q ss_pred E-ccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc-EEEEE---ec-----CCceEEEEEccCCCCEEEEEECCCcE
Q 002407 563 F-QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIF---SH-----SDYVTCIQFNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 563 l-~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~-~~~~~---~h-----~~~V~~v~fsp~dg~~L~sgs~Dg~I 632 (927)
+ ..|.-.|.+|.+..+...+..+.|=.|.+|++.-.. +..+. +| +.-|++..|+|...+.|.-.+..|.|
T Consensus 167 yaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 167 YANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 3 568889999999999666666778889999987432 22221 22 34689999999777788888889999
Q ss_pred EEEeCCCCcEEE--------e---------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 633 RIWSIPERQVVD--------W---------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 633 ~IWDl~t~~~v~--------~---------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
++-|++...+-. . ...-..|..+.|+++|+++++-. --+++|||++..+
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 999998532210 0 11114678899999999888764 4689999998644
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=2.7e-06 Score=98.07 Aligned_cols=284 Identities=15% Similarity=0.202 Sum_probs=168.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
.+++..+.++|.|+-+|.++.-|. .|-|+...-....++... ..-.+..+.|++.... .
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~---tpw~vad~qws~h~a~-----------------~ 82 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHI---TPWQVADVQWSPHPAK-----------------P 82 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeecc---CcchhcceecccCCCC-----------------c
Confidence 466888999999999999987764 455666544333332111 1111222333332110 0
Q ss_pred ccccccccCcccccceEeec----CCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc-EEEEEe-cC
Q 002407 536 INRKSLSLDHMVVPETVFAL----SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-CLKIFS-HS 607 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~----s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~ 607 (927)
....+.+.... .+|.+ +......+.||...|+++.|+++ ..|++++.|-.|..||+++.. ++..+. -.
T Consensus 83 ~wiVsts~qka----iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 83 YWIVSTSNQKA----IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred eeEEecCcchh----hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 00000000000 01111 22334567899999999999998 679999999999999999764 333333 44
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEEe-ccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVDW-NDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~~-~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
.....|+|+-.+++.+++ +....|++||++.+. ++.+ ..+-..|+.+.|.. ....+.+.+.|++|++||.......
T Consensus 159 s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred ccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 566789999867766554 455679999998764 3333 33445677777765 3346888899999999998765443
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEE------------ECCcceEEEEeecCCcceEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVV------------DGIDLVHKFKGFRNTNSQISASL 751 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~Vw------------D~~~~~~~~~~~~~~~~v~sv~f 751 (927)
.... .....+|.--.+.|-|..+++--. .+..+.++ |....+..|.+|. ..|..+.|
T Consensus 238 ~~~~--------vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~--D~V~eFlW 307 (1081)
T KOG0309|consen 238 SKRT--------VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD--DVVLEFLW 307 (1081)
T ss_pred ccee--------ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcc--hHHHHHhh
Confidence 3322 133345555555555443222211 11123332 2445566666653 33444433
Q ss_pred ec--------C--CCEEEEEECCCcEEEEECCCC
Q 002407 752 TA--------N--GRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 752 sp--------d--g~~Lasgs~Dg~I~IWdl~s~ 775 (927)
-. | .-.|+|-+.|..+++|-+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 22 2 226999999999999999763
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.36 E-value=0.00047 Score=74.08 Aligned_cols=182 Identities=12% Similarity=0.151 Sum_probs=118.5
Q ss_pred EEEEEec-CCcEEEEEeCCCcEEEEeCCCCcEEEEEec------CCceEEEEEccCCCCEEEEEECC--------CcEEE
Q 002407 570 VLDLSWS-KSQHLLSSSMDKTVRLWHLSSKTCLKIFSH------SDYVTCIQFNPVDDRYFISGSLD--------AKVRI 634 (927)
Q Consensus 570 V~~l~~s-pd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h------~~~V~~v~fsp~dg~~L~sgs~D--------g~I~I 634 (927)
...+++. +++.|+.+...+. .++|+.+++....+.. ....+.+++.| ++++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 5566666 6688888877555 5559998866555542 34678999999 89877776654 55777
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEE-EECCCeEEEEECCCCe--eeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALV-GSYKGSCHLYNTSENK--LQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~t-gs~Dg~I~IwDl~~~~--~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
++.. ++.......-...+.++|+|+++.|++ -+..+.|..|++.... +.....+ .. ........-.+++..+
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~-~~---~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVF-ID---FPGGPGYPDGLAVDSD 194 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEE-EE----SSSSCEEEEEEEBTT
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeE-EE---cCCCCcCCCcceEcCC
Confidence 7777 665555555567899999999997764 5667889999986322 2211111 00 0122235788999998
Q ss_pred CCcEEEEEECCCcEEEEECC-cceEEEEeecCCcceEEEEEe-cCCCEEEEE
Q 002407 712 SSSEVLVTSADSRIRVVDGI-DLVHKFKGFRNTNSQISASLT-ANGRYVVSA 761 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~~~~~v~sv~fs-pdg~~Lasg 761 (927)
|. ++++....+.|.++|.. +.+..+... ...+++++|. ++.+.|+..
T Consensus 195 G~-l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 195 GN-LWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S--EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEE
T ss_pred CC-EEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEE
Confidence 86 66666788999999965 334444433 3478899994 665555443
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.36 E-value=1.2e-06 Score=65.42 Aligned_cols=37 Identities=41% Similarity=0.658 Sum_probs=34.8
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWd 484 (927)
+.+++++|.+.|++|+|+|++.+||||+.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3567899999999999999999999999999999997
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00012 Score=84.90 Aligned_cols=146 Identities=12% Similarity=0.062 Sum_probs=90.1
Q ss_pred EEEEEecCCc-EE-EEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcE
Q 002407 570 VLDLSWSKSQ-HL-LSSSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQV 642 (927)
Q Consensus 570 V~~l~~spd~-~L-~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~ 642 (927)
+....|+||+ .| ++.+.+ ..|.++|+.+++......+........|+| |++.|+..+. .+ .|.+.|+.+++.
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4455688883 33 333333 468888988887655444444345668999 8887776654 33 488889988877
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECC---------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYK---------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~D---------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
......... ...|+|||++|+..... ..|.+.|+.++...... .. .......|+|+|.
T Consensus 314 ~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT----------~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 314 EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLT----------AN-GVNQFPRFSSDGG 380 (419)
T ss_pred EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECC----------CC-CCcCCeEECCCCC
Confidence 554332222 24899999998877654 36888898887643321 11 1223578999998
Q ss_pred cEEEEEECCCc--EEEEE
Q 002407 714 SEVLVTSADSR--IRVVD 729 (927)
Q Consensus 714 ~~Llsgs~Dg~--I~VwD 729 (927)
.++++....+. |.+.+
T Consensus 381 ~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIR 398 (419)
T ss_pred EEEEEEccCCcEEEEEEe
Confidence 54444433333 44444
No 293
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.29 E-value=0.00031 Score=90.20 Aligned_cols=204 Identities=13% Similarity=0.129 Sum_probs=130.5
Q ss_pred EEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEec---------------CCceEEEEEccCCCCEEEEEE-CCCcE
Q 002407 571 LDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSH---------------SDYVTCIQFNPVDDRYFISGS-LDAKV 632 (927)
Q Consensus 571 ~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h---------------~~~V~~v~fsp~dg~~L~sgs-~Dg~I 632 (927)
..+++++. + .+++-+..+.|++||... ..+..+.- -.....|++.+ +++.|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 45677764 4 455666778899999864 44433331 12357899998 777665554 45679
Q ss_pred EEEeCCCCcEEEeccC-----------------CCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeeccc----c
Q 002407 633 RIWSIPERQVVDWNDL-----------------HEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPI----N 690 (927)
Q Consensus 633 ~IWDl~t~~~v~~~~~-----------------~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i----~ 690 (927)
+++|+.++.+..+... -.....++++| ++..+++...++.|++||..++.......- .
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 9999888765433210 12356899999 566666777788999999988765321100 0
Q ss_pred ccc-ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE-Ee-----------ec---------CCcceEE
Q 002407 691 LQN-KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF-KG-----------FR---------NTNSQIS 748 (927)
Q Consensus 691 ~~~-~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~-~~-----------~~---------~~~~v~s 748 (927)
... ............|+|+|++..++++-+.++.|++||........ .+ .. .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 00001223567899999988677777888999999965322111 10 00 0112357
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
++++++|+++++-..++.|++||..++.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 8999999988888899999999998754
No 294
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.24 E-value=1.4e-05 Score=82.70 Aligned_cols=184 Identities=14% Similarity=0.226 Sum_probs=112.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEE-EEEe--cCCceEEEEEccCCCCEEEEEEC-----CCcEEEEeCCCCcEEE-ecc
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKTCL-KIFS--HSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPERQVVD-WND 647 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~~~-~~~~--h~~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~t~~~v~-~~~ 647 (927)
++..++++..||.+.+++.+.-..+ ..+. |.+.. +.++.. .+++|.++.. -+..+.|+++..+.+. ...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~-~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICR-HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccceee-cccEEecCCcceEeeccceeeeccccccccccccc
Confidence 3467999999999999987752111 1111 11111 111111 2333433321 2345667765543322 222
Q ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 648 LHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 648 ~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
..+.|++++-+|.. ..+++|+.||.+-+||.+.......+ .+.|...|..+.|+|.++..|+++++||.+.
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--------l~ahk~~i~eV~FHpk~p~~Lft~sedGslw 249 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--------LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLW 249 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--------HHHhhhhhhheeccCCCchheeEecCCCcEE
Confidence 22459999999954 56778899999999999987433322 2589999999999999999999999999999
Q ss_pred EEECCc-ceEE---------------------EEeecCCcceEE-EEEecCCCEEEEEECCCcEEEEE
Q 002407 727 VVDGID-LVHK---------------------FKGFRNTNSQIS-ASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 727 VwD~~~-~~~~---------------------~~~~~~~~~v~s-v~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.||... .+.. +...... ...+ -.|.--|..|++|+.-+.||+++
T Consensus 250 ~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~-~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 250 HWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPS-RSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEcCCCceEEecCccccccccccCCcccceEeeeccccc-cceeeeeeeccCceEEeccccceEEEec
Confidence 999442 1110 0000000 0011 13344577888888888888875
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.21 E-value=1.5e-05 Score=87.13 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=107.0
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC---CCCeee
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT---SENKLQ 684 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl---~~~~~~ 684 (927)
.+.++| .+++|+.+..+....++++... +++.........+++.|..+...+.++...|.++-+|+ ..+...
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc
Confidence 344566 7777877777777666666543 33444455556667777777777776665555555444 333333
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
.. .+|-..++.++|+||+. +|+++..|..|+|-... ..+..|- ..|...|..+++-++ ..|++++
T Consensus 146 ~~----------lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~Iesfc-lGH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 146 PI----------LGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFC-LGHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred hh----------hhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhc-cccHhheeeeeeccC-ceeeecC
Confidence 22 48999999999999986 89999999999996532 1222222 235566777777655 5699999
Q ss_pred CCCcEEEEECCCCCCcccc
Q 002407 763 EDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 763 ~Dg~I~IWdl~s~~~~~~~ 781 (927)
.|++|++||+.+++.+...
T Consensus 213 GD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCcEEEEecccCCccccc
Confidence 9999999999999877543
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.20 E-value=0.0013 Score=76.01 Aligned_cols=178 Identities=10% Similarity=0.020 Sum_probs=109.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCc--------eEEEEEcc-CCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY--------VTCIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~--------V~~v~fsp-~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
+.++.++.++.+..+|..+++.+..+....+ ...+..+| ..+..++.++.+|.+..+|..+++.+-.....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 5677788899999999999887765532111 11111122 12456777788999999999999876433322
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
. ...+. ..+..|++++.+|.+..+|..+++.+..... .......+.... ++ .|++++.+|.|+++|
T Consensus 286 ~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------~~~~~~~sp~v~-~g--~l~v~~~~G~l~~ld 351 (394)
T PRK11138 286 S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD--------LLHRLLTAPVLY-NG--YLVVGDSEGYLHWIN 351 (394)
T ss_pred C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc--------cCCCcccCCEEE-CC--EEEEEeCCCEEEEEE
Confidence 2 11122 2466788888999999999999876543221 001111222222 22 688899999999999
Q ss_pred CCcceEEEEeecCCcceE-EEEEecCCCEEEEEECCCcEEEEEC
Q 002407 730 GIDLVHKFKGFRNTNSQI-SASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~-sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..+.....+.......+. ...+ .+..|+.++.||.|+.+++
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 655444333322222222 1222 2457888899999998865
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.20 E-value=3.1e-06 Score=90.45 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=118.7
Q ss_pred EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 624 ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
++.+.+..|-+-|+.++.... +.....|.++.|.-.+..+..|+..|.|..+|++....-.... .....|...|
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~-----a~rlyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC-----AQRLYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc-----eEEEEcCcch
Confidence 555667788899998876544 4467789999999989999999999999999998752111110 1113788999
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCc-----ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGID-----LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~-----~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++++...-....|++.+.+|+|.+||.+- .+..+.+|.+...-.-+.+.+....|++++.|...+||.++.+..+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 99988774445899999999999999542 3678888887776667778888889999999999999999987765
Q ss_pred ccc
Q 002407 779 SRS 781 (927)
Q Consensus 779 ~~~ 781 (927)
...
T Consensus 382 ~ti 384 (425)
T KOG2695|consen 382 CTI 384 (425)
T ss_pred ecc
Confidence 544
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8.4e-06 Score=89.82 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=150.0
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEE---EEEe-cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCC
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCL---KIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPE 639 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~---~~~~-h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t 639 (927)
.|.+.|+.+.....+++++++.||.++.|.-..-.-+ +.+. |-..|..++.+- ++.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 4888899888777799999999999999986542222 2222 778888898888 8999999777 99999999988
Q ss_pred CcEEEeccCCCcEEEEEECC-CC--C-EEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 640 RQVVDWNDLHEMVTAACYTP-DG--Q-GALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sla~sp-dg--~-~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
-..+..+........++|.- .| . .|+++ -.++.+.++|-....+...+. ..-|..+|..+.+.+.+.
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~f-------kklH~sPV~~i~y~qa~D- 157 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYF-------KKLHFSPVKKIRYNQAGD- 157 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcccee-------cccccCceEEEEeecccc-
Confidence 76665444444333344432 22 1 33333 457889999977654332221 257899999999999887
Q ss_pred EEEEEECCCcEEEEECCcc---------------eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 715 EVLVTSADSRIRVVDGIDL---------------VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~---------------~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.+++....|.|.-|..... ...+..........++.|+|+|..+.+-+.|..|+++.+.++....
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 5777778899999985421 0112223345667889999999999999999999999999987654
Q ss_pred cc
Q 002407 780 RS 781 (927)
Q Consensus 780 ~~ 781 (927)
..
T Consensus 238 ei 239 (558)
T KOG0882|consen 238 EI 239 (558)
T ss_pred hh
Confidence 33
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.19 E-value=1.7e-05 Score=82.03 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=61.3
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEE-Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI-FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~-~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t 639 (927)
.|++++-+|. ..+++|+.||.|-+||++....... +. |+.+|+.+-|+|.++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4889998886 6788999999999999998744332 23 9999999999999999999999999999999765
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=5.5e-06 Score=88.63 Aligned_cols=145 Identities=14% Similarity=0.241 Sum_probs=109.9
Q ss_pred eEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-----~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
.+.|. -.+.|.++.|... +.++.|+..|.|...|++.+ .+.+.+-|...|++++....++.+|++.+.+|+|+
T Consensus 246 ~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 246 QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCcee
Confidence 33344 5678999999884 88999999999999999864 57778889999999998776788999999999999
Q ss_pred EEeCCCCcE---EEeccCC-C--cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 634 IWSIPERQV---VDWNDLH-E--MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 634 IWDl~t~~~---v~~~~~~-~--~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
+||++--++ +.....| . ...-+.+.+....+++++.|-..+||.++.+.++.+.+... ......+.+++
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~-----s~~e~d~~sv~ 399 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY-----SASEVDIPSVA 399 (425)
T ss_pred EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC-----cccccccccee
Confidence 999987655 4433332 1 22334456677788889999999999999999988866432 12333556666
Q ss_pred EcC
Q 002407 708 FAP 710 (927)
Q Consensus 708 fsp 710 (927)
|..
T Consensus 400 ~~s 402 (425)
T KOG2695|consen 400 FDS 402 (425)
T ss_pred hhc
Confidence 654
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.5e-05 Score=87.86 Aligned_cols=264 Identities=14% Similarity=0.153 Sum_probs=169.9
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeecccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.+++..++.++.++.|.+.- .......+.+.+|-+.|.+++.+-+|.+++|.+. |..++++|+++-..+.-+....
T Consensus 20 a~fiiqASlDGh~KFWkKs~--isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~- 96 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSR--ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD- 96 (558)
T ss_pred hheEEeeecchhhhhcCCCC--ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-
Confidence 45778889999999998763 2333444667889999999999999999999887 9999999997654332211000
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
-.+.+. +..++.
T Consensus 97 ------------------------------------------------------------------lPg~a~-wv~skGd 109 (558)
T KOG0882|consen 97 ------------------------------------------------------------------LPGFAE-WVTSKGD 109 (558)
T ss_pred ------------------------------------------------------------------CCCceE-EecCCCC
Confidence 000111 111121
Q ss_pred --cEEEE-EeCCCcEEEEeCCCCcEE-EEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC------CcE----
Q 002407 579 --QHLLS-SSMDKTVRLWHLSSKTCL-KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------RQV---- 642 (927)
Q Consensus 579 --~~L~S-gs~DgtV~lWDl~t~~~~-~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t------~~~---- 642 (927)
..|+. .-.++.|.++|-...-+. ..+. |..+|.++.++| .++.+++....|.|..|.... .++
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccc
Confidence 12333 345688999997765533 3333 999999999999 888999999999999998763 111
Q ss_pred ------EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc-ccCCCCCeEEEEEcCCCCcE
Q 002407 643 ------VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK-KRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 643 ------v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~-~~~h~~~Vtsl~fspdg~~~ 715 (927)
..+...+...+++.|+|+|..+.+-..|..|+++++.++++.+.+.-...... .......+..+.|...
T Consensus 189 K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRR---- 264 (558)
T KOG0882|consen 189 KHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRR---- 264 (558)
T ss_pred cccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhh----
Confidence 11223345788999999999999999999999999999998876532111000 0011222333333221
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++ ...+.- ......+.++|...|++|+-++-=| |++.++.++.
T Consensus 265 mav---------------erelek-~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 265 MAV---------------ERELEK-HGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhH---------------HhhHhh-hcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 000 000111 1223345678888888888777655 7777777653
No 302
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.08 E-value=0.0012 Score=69.95 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=72.9
Q ss_pred EEEEEeCCCcEEEEeCCC-----CcEEEEEe----cCCceEEEEEccCCCCEEEEEECC-C----------cEEEEeCCC
Q 002407 580 HLLSSSMDKTVRLWHLSS-----KTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLD-A----------KVRIWSIPE 639 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t-----~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~D-g----------~I~IWDl~t 639 (927)
.|+.-..+|.++=|-+.. .+....|. +...|.++.|+| ..++|++|+.. . -+.-|.+-+
T Consensus 111 ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 111 ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILS 189 (282)
T ss_pred eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcC
Confidence 466666777666665422 23334443 577899999999 66777766542 1 255666532
Q ss_pred CcE---------------------EEe---------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 640 RQV---------------------VDW---------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 640 ~~~---------------------v~~---------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
+.. ... ....+.|..|.++|||+.||+...+|.|.+|++..-++......
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 210 000 12246799999999999999999999999999998777666543
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=7.2e-05 Score=88.08 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=131.3
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..+.++|++++ +++|+.|..+|.|++++..... ...+.+... ..+|.++++++.||+|.|..+-+.+...
T Consensus 38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh---cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 44567788874 5889999999999999876543 333333332 5689999999999999999988877666
Q ss_pred ecccccccccccCCCCCeEEEEEcCC----CCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPG----SSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspd----g~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
++ ....++.+++++|+ ....+++|+.-| +.++.-. ........+...++|.+++|. |.+||
T Consensus 108 ~~----------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIA 174 (846)
T KOG2066|consen 108 QY----------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIA 174 (846)
T ss_pred eE----------ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEE
Confidence 54 34567899999997 233788999888 7777621 111222456678899999985 77888
Q ss_pred EEECCCcEEEEECCCCCCcccccccce------eeeeeeecCCCeEEEEecCCceeEEeecCC
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITV------THSYEHFHCQDVSVAIPWPGVGDTWGLQDT 816 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~------~~~~~~~~~~~v~vavs~~g~~~i~~~~d~ 816 (927)
-++.+| |+|||+.............. .....+|. +...+.+.|..++.+.....+
T Consensus 175 Wand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~-~~~~LVIGW~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ-DEDRLVIGWGDSVKICSIKKR 235 (846)
T ss_pred EecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec-CCCeEEEecCCeEEEEEEecc
Confidence 888777 99999998765543322111 11222333 456778999999988877744
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.07 E-value=0.0026 Score=68.26 Aligned_cols=187 Identities=13% Similarity=0.105 Sum_probs=124.1
Q ss_pred EEEecC-CcEEEEE-eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--
Q 002407 572 DLSWSK-SQHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-- 647 (927)
Q Consensus 572 ~l~~sp-d~~L~Sg-s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-- 647 (927)
++.|.+ ++.|+.. -..+.|..|+..+++... +.... ...+++...++ .|+.+... .+.++|+.+++...+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 578887 4555544 468899999998876543 33333 77788873154 55555554 45666999887654333
Q ss_pred ----CCCcEEEEEECCCCCEEEEEECC--------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 648 ----LHEMVTAACYTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 648 ----~~~~V~sla~spdg~~l~tgs~D--------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
....++.+++.|+|.+.++.... |.|..++.. ++..... ......+.++|+|+++.+
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~----------~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA----------DGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE----------EEESSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe----------cCcccccceEECCcchhe
Confidence 23578899999999977765543 568888877 4433321 233557899999999866
Q ss_pred EEEEECCCcEEEEECC--cc----eEEEEeecCC-cceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 716 VLVTSADSRIRVVDGI--DL----VHKFKGFRNT-NSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~--~~----~~~~~~~~~~-~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+++-+..+.|..|+.. .. ...+...... ...-.+++..+|++.++.-..+.|.+++.+
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 6677888999999842 11 1223222222 236689999999988888889999999987
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=2.5e-06 Score=99.91 Aligned_cols=218 Identities=15% Similarity=0.235 Sum_probs=147.6
Q ss_pred cceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc
Q 002407 444 TALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 444 ~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
+++...+.+..|+..-+|++|+-+.++|+.|+..|.|+++++.+|...... ..|...+..+.-+.+|..+.+...
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeecc
Confidence 345555677899999999999999999999999999999999998755443 567777777777777665544322
Q ss_pred CCceeeecccccccccccccCcccccceEeec--CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
...- . ..+|.+ ...+.++|.+ -.++.|+.. ..-+.|..-..+.|||++++..
T Consensus 1164 ~S~P---------------l------saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1164 SSSP---------------L------SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred ccCc---------------h------HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 1110 0 012222 2234444443 356788876 4445555557789999999987
Q ss_pred EEEE-e----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 601 LKIF-S----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 601 ~~~~-~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
+.++ . ....-++..|+| ++.+++ +||. +||++..+.+..++.-..-..-.|+|.|..++.-+ .|
T Consensus 1219 l~tylt~~~~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EI 1287 (1516)
T KOG1832|consen 1219 LQTYLTDTVTSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EI 1287 (1516)
T ss_pred HHHhcCcchhhhhhccccccCC-CcceEe---eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hh
Confidence 7663 2 222347889999 777665 4553 79999887666554443444557999999988876 59
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
||+++.++++..+ .-.-+.+.|+..|.
T Consensus 1288 wD~RTF~lLh~VP-----------~Ldqc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVP-----------SLDQCAVTFNSTGD 1314 (1516)
T ss_pred hhhHHHHHHhcCc-----------cccceEEEeccCcc
Confidence 9999988876532 12234566777665
No 306
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.00025 Score=82.97 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=147.6
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCC-----------CCEEEEEECCCcEEEE
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVD-----------DRYFISGSLDAKVRIW 635 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~d-----------g~~L~sgs~Dg~I~IW 635 (927)
..-.++.|+|.|.|+.|+. ..|.+-|..+-+.++.+. |...|+.+.|.|.. .-+|+++...|.|.+|
T Consensus 16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 3366789999999988876 468889999999998888 88999999998731 1256777888999999
Q ss_pred eCCCCcEEEeccCC-CcEEEEEECC---CC-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 636 SIPERQVVDWNDLH-EMVTAACYTP---DG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 636 Dl~t~~~v~~~~~~-~~V~sla~sp---dg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|...+..+.++.++ +.+..++|-+ +. ..|++-....+|.+|+..+|+...++. .......|+.+.|
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~---------ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD---------YSHEILSCFRVDP 165 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc---------cCCcceeeeeeCC
Confidence 99998888777665 6788888876 34 456677778899999999999877653 4445667799999
Q ss_pred CCCcEEEEEECCCcEEEEECC------cceEEEEeecC-----------------Cc---------ceEEEEEecCCCEE
Q 002407 711 GSSSEVLVTSADSRIRVVDGI------DLVHKFKGFRN-----------------TN---------SQISASLTANGRYV 758 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~------~~~~~~~~~~~-----------------~~---------~v~sv~fspdg~~L 758 (927)
-....+..-+..|.+.+.+.. ...+.+..... .. ....++|+|.-+-+
T Consensus 166 fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 166 FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 877788888888888887711 11122211111 00 01135778877767
Q ss_pred EEEECCCcEEEEECCCCCCcc
Q 002407 759 VSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s~~~~~ 779 (927)
+.......++|+|++-.....
T Consensus 246 lfi~~prellv~dle~~~~l~ 266 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLA 266 (1062)
T ss_pred EEEEeccceEEEcchhhceeE
Confidence 777778889999998765443
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.01 E-value=0.0024 Score=73.67 Aligned_cols=185 Identities=12% Similarity=0.100 Sum_probs=113.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE--EEccC-CCCEEEEEECCCcEEEEeCCCCcEEEeccCCC----
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI--QFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWNDLHE---- 650 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v--~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~---- 650 (927)
++.++.+..++.|..+|..+|+.+..+....+...+ .-+|. .+..++.+..++.+..+|..+++.+-......
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 467888888999999999999998877633221100 01110 12356777888999999999887653222110
Q ss_pred ----cEEEEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 651 ----MVTAACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 651 ----~V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
....+..+| .+..+++++.+|.+..+|+.+++......+ . ....+... +. .|++++.++.
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------~---~~~~~~~~--~~-~vy~~~~~g~ 305 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--------G---SVNDFAVD--GG-RIYLVDQNDR 305 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--------C---CccCcEEE--CC-EEEEEcCCCe
Confidence 011111223 355677788899999999999987654321 1 11112222 23 6778888999
Q ss_pred EEEEECCcceEEEEeecCC-cceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 725 IRVVDGIDLVHKFKGFRNT-NSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~-~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
|..+|..+....+...... ....+..+ .+.+|+.++.+|.|++.|..+++..
T Consensus 306 l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 9999976554444322111 11112222 2557888899999999999887654
No 308
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.01 E-value=0.00075 Score=70.45 Aligned_cols=215 Identities=16% Similarity=0.086 Sum_probs=141.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+++.|...+...+|...+++.--..+ .-|...|+-+.=.-|. --+..++.|.++++.++..+.....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c----d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~------- 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC----DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA------- 153 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee----cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce-------
Confidence 467889999999999988776532222 3344433322221122 2466678899999988754421111
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC--CEEEEEecCC
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD--DVLDLSWSKS 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~--~V~~l~~spd 578 (927)
-|.. .+..++++++
T Consensus 154 ----------------------------------------------------------------~h~~~~~~ns~~~snd 169 (344)
T KOG4532|consen 154 ----------------------------------------------------------------VHNQNLTQNSLHYSND 169 (344)
T ss_pred ----------------------------------------------------------------eeccccceeeeEEcCC
Confidence 1222 2677888888
Q ss_pred -cEEEEEeCCCcEEEEeCCCCc--EEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE------Eecc
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKT--CLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV------DWND 647 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~--~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v------~~~~ 647 (927)
.++++.+....|.+|.+.... .+.+. ..++.-.+..|+. ....++++..||++.|||++..... ....
T Consensus 170 ~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~ 248 (344)
T KOG4532|consen 170 PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH 248 (344)
T ss_pred CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCC
Confidence 567777777889888887432 22322 2556667888998 8889999999999999999875432 1234
Q ss_pred CCCcEEEEEECCCCC--EEEEEECCCeEEEEECCCCeeeeecccccccccccCCC-CCeEEEEEcCCCCc
Q 002407 648 LHEMVTAACYTPDGQ--GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSS 714 (927)
Q Consensus 648 ~~~~V~sla~spdg~--~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fspdg~~ 714 (927)
|.+.+..+.|++.|. +|+..-.-+.+.+.|+++..-.+.+.+.. .+...|. ..|..-.|+.++..
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~~n~s 316 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGTNFNNENES 316 (344)
T ss_pred CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc--cccccccccccccccccCCCcc
Confidence 568999999998664 45555556789999999987666544322 2223343 34888888887763
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.01 E-value=0.00011 Score=87.21 Aligned_cols=178 Identities=13% Similarity=0.164 Sum_probs=137.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-CCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-LHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~~~V~sla 656 (927)
..++.|+....+..+|+.+.+..+... ....|+-|.. +++++.+|...|+|.+-|.++.+.+..+. |.+.|..+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF- 223 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceeee-
Confidence 457778888888899999888877776 3335776665 67899999999999999999988887554 44666554
Q ss_pred ECCCCCEEEEEEC---------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 657 YTPDGQGALVGSY---------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 657 ~spdg~~l~tgs~---------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
.-.|+.|++++. |.-|++||++..+.+..+++. ....-+.|+|.-...+++++..|+..+
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----------~~P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----------YGPQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------cCchhhhhcccccceEEEEecccceee
Confidence 456888888765 556899999987766554432 122456789987779999999999999
Q ss_pred EE---CCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 728 VD---GIDL-VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 728 wD---~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.| ..+. ...+..+.....+..++++++++.|+.+..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99 3332 44455555566699999999999999999999999998
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.98 E-value=0.0016 Score=70.91 Aligned_cols=202 Identities=11% Similarity=0.117 Sum_probs=135.8
Q ss_pred EEEEecCC--cEEEEEeCCCc-EEEEeCCCCcEEEEEecC---CceEEEEEccCCCCEEEEEEC-----CCcEEEEeCC-
Q 002407 571 LDLSWSKS--QHLLSSSMDKT-VRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIP- 638 (927)
Q Consensus 571 ~~l~~spd--~~L~Sgs~Dgt-V~lWDl~t~~~~~~~~h~---~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~- 638 (927)
..++.+|+ ..++.+-.-|+ ..+||..+++....+.-. ..--.-.|++ ++++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence 45677784 45666767665 778999999988877511 1223567999 9999998644 4789999998
Q ss_pred CCcEEE-eccCCCcEEEEEECCCCCEEEEEE------------------CCCeEEEEECCCCeeeeecccccccccccCC
Q 002407 639 ERQVVD-WNDLHEMVTAACYTPDGQGALVGS------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (927)
Q Consensus 639 t~~~v~-~~~~~~~V~sla~spdg~~l~tgs------------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h 699 (927)
+.+.+. +..+.-....+.+.|||+.|+++. ++-++.+.|..+++++.+..+.. .-|
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-----~~~ 161 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-----DLH 161 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-----ccc
Confidence 444444 333334567788999998888752 23467777888888877754421 246
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCC-------cEEEEECCcceEEEEee-----cCCcceEEEEEecCCCEEEEEE-CCCc
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADS-------RIRVVDGIDLVHKFKGF-----RNTNSQISASLTANGRYVVSAS-EDSY 766 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg-------~I~VwD~~~~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs-~Dg~ 766 (927)
...|..+++.++|. .++..-..+ .|-+++.......+... .-...+-++++++++.++++.+ .-+.
T Consensus 162 ~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 162 QLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred ccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 67799999999874 333332222 25555544433333321 2346788999999998886665 5677
Q ss_pred EEEEECCCCCCcc
Q 002407 767 VYVWKYEAESRPS 779 (927)
Q Consensus 767 I~IWdl~s~~~~~ 779 (927)
+.+||..++....
T Consensus 241 ~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 241 VAVWDAATGRLLG 253 (305)
T ss_pred EEEEECCCCCEee
Confidence 9999999876543
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=7.3e-06 Score=96.14 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=142.4
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCC--cEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA--KVR 633 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~ 633 (927)
++..+|+.|+...+|++|+-+ +.|+.|+..|.|+++++.+|....... |...|+-+.=+. ++..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHH
Confidence 566778899999999999987 899999999999999999998887776 999999999887 888777665433 367
Q ss_pred EEeCCC-CcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 634 IWSIPE-RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 634 IWDl~t-~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+|++.. +.....+ ..-.++.|+..-+.-++|+......|||+.++....++-... ......-++..|+|..
T Consensus 1171 LW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~-----~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT-----VTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc-----hhhhhhccccccCCCc
Confidence 898765 2222222 344577888776677778777889999999988776632111 1222223677899987
Q ss_pred CcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 713 SSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
. +++ .|| .+||.+.. ++.|..+. .-..=.|+|.|.-++.-++ |||+++-..+...
T Consensus 1243 ~-LIl---ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1243 T-LIL---NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSV 1299 (1516)
T ss_pred c-eEe---eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeech-----hhhhHHHHHHhcC
Confidence 5 333 333 46886543 33333221 1123369999999998876 9999987655443
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.89 E-value=2.6e-05 Score=58.08 Aligned_cols=37 Identities=35% Similarity=0.724 Sum_probs=34.8
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEe
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWD 594 (927)
+++.++.+|.+.|++|+|+|+ .+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567899999999999999999 8999999999999997
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.88 E-value=0.0027 Score=67.28 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=112.1
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEE--EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEE
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQ--FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGA 664 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~--fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l 664 (927)
+++|..||..+++.+........+.... ..+ ++.++++++.++.|..||..+++.+-.......+...- ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 6899999999999998887532222222 222 56678888899999999999999876555443322211 2245567
Q ss_pred EEEECCCeEEEEECCCCeeeeec-ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCC
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKS-PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~-~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~ 743 (927)
++++.++.|+.+|+.+++..... ..... ...........+. +. .++++..++.|..+|..+...........
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSP----PAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSC----TCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccceeeeEecccCCcceeeeecccccc----ccccccccCceEe--cC-EEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 77778899999999999987763 21100 0011111222333 33 78888889999999976555544443222
Q ss_pred cc----------eEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 744 NS----------QISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 744 ~~----------v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.. +..-.+..++ .++.++.++.+.-+|+.++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEE
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCE
Confidence 11 1122222344 777777778644449988763
No 314
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.80 E-value=0.014 Score=63.62 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=119.3
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEe-----CCCcEEEEeCC-CCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-----
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSS-----MDKTVRLWHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL----- 628 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs-----~DgtV~lWDl~-t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~----- 628 (927)
.|.|| -.|++| .+|++.- ..|.|-|||.. +-+.+..|. |.-....|.+.| +++.|+++-.
T Consensus 51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Th 123 (305)
T PF07433_consen 51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETH 123 (305)
T ss_pred EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccC
Confidence 45667 468888 4455542 34789999999 556666665 555667788999 8877777521
Q ss_pred -------------CCcEEEEeCCCCcEEEecc-----CCCcEEEEEECCCCCEEEEEECCC-------eEEEEECCCCee
Q 002407 629 -------------DAKVRIWSIPERQVVDWND-----LHEMVTAACYTPDGQGALVGSYKG-------SCHLYNTSENKL 683 (927)
Q Consensus 629 -------------Dg~I~IWDl~t~~~v~~~~-----~~~~V~sla~spdg~~l~tgs~Dg-------~I~IwDl~~~~~ 683 (927)
+-.|.+.|..+++++.... ++-.|..+++.++|..++..-..| .|-+++... .
T Consensus 124 pd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~ 201 (305)
T PF07433_consen 124 PDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A 201 (305)
T ss_pred cccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c
Confidence 2345667778888776422 345799999999997666554333 244444332 2
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
...+.. ...........|-+|++++++..+.+++=.-+.+.+||..+....-.. .-..+..++..+++ ++++.+.
T Consensus 202 ~~~~~~--p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~--~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 202 LRLLPA--PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV--PLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceeccC--ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc--ccCceeeeeecCCc-eEEeCCC
Confidence 222211 111123556789999999998855555567789999985543322211 22335556666666 6666554
Q ss_pred CCcEEEEECCC
Q 002407 764 DSYVYVWKYEA 774 (927)
Q Consensus 764 Dg~I~IWdl~s 774 (927)
|. ++.+..
T Consensus 277 -G~--~~~~~~ 284 (305)
T PF07433_consen 277 -GQ--LIRLSP 284 (305)
T ss_pred -cc--EEEccC
Confidence 43 444443
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.80 E-value=0.0026 Score=78.38 Aligned_cols=257 Identities=15% Similarity=0.118 Sum_probs=150.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccc-
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGR- 534 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~- 534 (927)
.+.|.++.|..++.-++.+..+|.|.+-|..+..... .......|.++.|+||...++.......+......-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei------vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI------VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee------eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence 4689999999999999999999999999876654221 134457788999999998888776655554333211
Q ss_pred cccccccccCcccccceEeecCCCceEEEcc---------------------CCCCEEEEEecCCc-EEEEE----eCC-
Q 002407 535 SINRKSLSLDHMVVPETVFALSDKPICSFQG---------------------HLDDVLDLSWSKSQ-HLLSS----SMD- 587 (927)
Q Consensus 535 ~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g---------------------H~~~V~~l~~spd~-~L~Sg----s~D- 587 (927)
.+..+.+..+.....+.+----++.-..|+| -.+.=+.|.|--|+ ++++. -.+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 2222222111111100000000111111221 11122458898885 55552 223
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEE---CCCcEEEEeCCC---CcEEEeccCC-CcEEEEEECC
Q 002407 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPE---RQVVDWNDLH-EMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs---~Dg~I~IWDl~t---~~~v~~~~~~-~~V~sla~sp 659 (927)
..|+|||-+ +..-.+-. ....=.+++|-| .|..+++-. .|+.|.+|.-+. +....-.... ..+..++|+.
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC
Confidence 789999987 43322211 334456899999 888888754 355688887443 2222222222 3499999999
Q ss_pred CCCEEEE---EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 660 DGQGALV---GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 660 dg~~l~t---gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++..|++ ......|++|-+.+.....+..+.+. .... +.|+|.....+.+...+|.+.++|
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~-------~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS-------QKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeEEEEEEEEecc-------cccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 9999888 44455599999988765554433221 1111 667776555555555566655554
No 316
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.008 Score=69.02 Aligned_cols=278 Identities=15% Similarity=0.117 Sum_probs=139.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc-eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG-ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~-~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
.|+.|.|+++..-||.|-..|.|.||.+...+.-. ... .... -..+.+ +........+.... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~----~~~~----~~~~~~----~~~~~~~~~l~di~-~--- 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQ----PPDL----DYNFRR----FSLNNSPGKLTDIS-D--- 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------------S------GGGSS-SEEE-G-G---
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCC----Cccc----Cccccc----ccccCCCcceEEeh-h---
Confidence 48999999999999999999999999987654322 000 0000 000000 00000000000000 0
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe---------cC
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS---------HS 607 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~---------h~ 607 (927)
+....+..- -.|..-+....++|++++.+.-++++.|..+|.+.|.|++....+..-. ..
T Consensus 67 -r~~~~~~~g----------f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~ 135 (395)
T PF08596_consen 67 -RAPPSLKEG----------FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSS 135 (395)
T ss_dssp -G--TT-SEE----------EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS--
T ss_pred -hCCcccccc----------cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccc
Confidence 000000000 1455566667899999999866999999999999999998887776643 23
Q ss_pred CceEEEEEccC----CC---CEEEEEECCCcEEEEeCC--C-Cc----EEEec-cCCCcEEEEE-ECCC-----------
Q 002407 608 DYVTCIQFNPV----DD---RYFISGSLDAKVRIWSIP--E-RQ----VVDWN-DLHEMVTAAC-YTPD----------- 660 (927)
Q Consensus 608 ~~V~~v~fsp~----dg---~~L~sgs~Dg~I~IWDl~--t-~~----~v~~~-~~~~~V~sla-~spd----------- 660 (927)
..|+++.|.-. |+ -.+++|...|.+.+|.+. . +. ..... .+...|..+. |+.+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence 46888888621 22 368899999999999874 1 11 11222 3445555444 3221
Q ss_pred ---------CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC----CCCcEEEEEECCCcEEE
Q 002407 661 ---------GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP----GSSSEVLVTSADSRIRV 727 (927)
Q Consensus 661 ---------g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp----dg~~~Llsgs~Dg~I~V 727 (927)
-..+++...+..++++...+.+..++.. ........+.+.+ .+...|++-..+|.|++
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~---------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF---------DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI 286 (395)
T ss_dssp HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE----------SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred hhccccCCCcCcEEEEEcccceEEEeCCCCcccceee---------ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence 1235555567889999998877655431 1112223334431 23346777789999999
Q ss_pred EECCcceEEEEeecC----CcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 728 VDGIDLVHKFKGFRN----TNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 728 wD~~~~~~~~~~~~~----~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
|.+..+......... ...+...+|+++|..++-.+. ..+.+|.+
T Consensus 287 ~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 287 YSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred EECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 997665554443321 122334677888876665543 34444444
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.0059 Score=71.06 Aligned_cols=180 Identities=9% Similarity=0.092 Sum_probs=95.1
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~ 650 (927)
....|.+.+.+++-....+|.|+.--.....+.+.....+..|-. |.+|+..+. +.|.+||+.+++++.......
T Consensus 72 ~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 72 LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG----GNLLGVKSS-DFICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E
T ss_pred eEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc----CcEEEEECC-CCEEEEEhhHcceeeEEecCC
Confidence 456788888888888889999963222222233433334444433 666666654 489999999999999887765
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCC------------eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSEN------------KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~------------~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
|..+.|+++|.+++..+.+ .+.|++.... ..... ......|.+.+|..+ .++-
T Consensus 147 -vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~----------~E~~~~IkSg~W~~d---~fiY 211 (443)
T PF04053_consen 147 -VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELI----------HEISERIKSGCWVED---CFIY 211 (443)
T ss_dssp --EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEE----------EEE-S--SEEEEETT---EEEE
T ss_pred -CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEE----------EEecceeEEEEEEcC---EEEE
Confidence 8999999999999998755 6777665433 11111 111456777888765 3444
Q ss_pred EECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 719 TSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 719 gs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+... .|+.+=... ...+... ..++.-+.+.+..+.|.....|+.|..+.+..
T Consensus 212 tT~~-~lkYl~~Ge-~~~i~~l--d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 212 TTSN-HLKYLVNGE-TGIIAHL--DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp E-TT-EEEEEETTE-EEEEEE---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcCC-eEEEEEcCC-cceEEEc--CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 4444 665543322 2222222 23455556667777888888888888888764
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0012 Score=72.47 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=74.5
Q ss_pred CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
++...+.+|...|.+|+|+|. +++..++.+.+|+|.|+++..++..+.....+++++|.-++.++|+.|...|.|.||
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEE
Confidence 445567788999999999997 679999999999999999999999888669999999998778889999999999999
Q ss_pred eCCCCc
Q 002407 636 SIPERQ 641 (927)
Q Consensus 636 Dl~t~~ 641 (927)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998754
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.72 E-value=0.0018 Score=74.87 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=90.9
Q ss_pred EEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEE----CCCc----EEEEeCCCCcEE----EeccCCCcEEEE
Q 002407 590 VRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGS----LDAK----VRIWSIPERQVV----DWNDLHEMVTAA 655 (927)
Q Consensus 590 V~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs----~Dg~----I~IWDl~t~~~v----~~~~~~~~V~sl 655 (927)
+.++.+..++ .+..+..+....++.|+-..+..+.+.. .+|. -.+|++...++. ..+..+..+.++
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 4444444432 2233334555677888875566666542 2343 346776555432 355677899999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+++|+...|+.|+.||.|.+||...+..... ...-.++.++|+|+|. ++++|+..|.|.+||.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----------ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----------KAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee-----------eecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 9999999999999999999999977644332 2335578999999987 8999999999999994
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.71 E-value=0.0016 Score=80.22 Aligned_cols=197 Identities=13% Similarity=0.165 Sum_probs=135.4
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeC----CCC-
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI----PER- 640 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl----~t~- 640 (927)
.+.|.++.|..+ ..++.+...|.|.+-|..+......-.-...|.+++|+| |+..++..+..++|.+-.- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence 368999999887 778999999999999988876655445788999999999 9999988888777765332 100
Q ss_pred ----------cEEE--e------c----------------------cCCCcEEEEEECCCCCEEEEE-----ECCCeEEE
Q 002407 641 ----------QVVD--W------N----------------------DLHEMVTAACYTPDGQGALVG-----SYKGSCHL 675 (927)
Q Consensus 641 ----------~~v~--~------~----------------------~~~~~V~sla~spdg~~l~tg-----s~Dg~I~I 675 (927)
+.+. | + ...+.=+.++|--||+++++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0000 0 0 011223458999999999983 22378999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE---ECCCcEEEEECCcceE---EEEeecCCcceEEE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT---SADSRIRVVDGIDLVH---KFKGFRNTNSQISA 749 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg---s~Dg~I~VwD~~~~~~---~~~~~~~~~~v~sv 749 (927)
||-+ +.+.... ....+.-.+++|-|.|. ++++. ..|+.|.+|....+.+ .+........+..+
T Consensus 227 ~drE-g~Lns~s---------e~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 227 YDRE-GALNSTS---------EPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred eccc-chhhccc---------CcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 9987 5444332 13334456889999876 55554 4567899998433322 12223344458899
Q ss_pred EEecCCCEEEE---EECCCcEEEEECCCC
Q 002407 750 SLTANGRYVVS---ASEDSYVYVWKYEAE 775 (927)
Q Consensus 750 ~fspdg~~Las---gs~Dg~I~IWdl~s~ 775 (927)
+|+.++..||+ ......|++|-+.+-
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCe
Confidence 99999999988 455555999998874
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0026 Score=69.97 Aligned_cols=250 Identities=11% Similarity=0.051 Sum_probs=138.9
Q ss_pred eeEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+-|.+|...|..|+|||..+ +|..++.+.+|+|.|+.+.....
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs----------------------------------- 230 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS----------------------------------- 230 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeee-----------------------------------
Confidence 456789999999999999877 78889999999999997653222
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEE-EEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCL-KIF 604 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~-~~~ 604 (927)
.+..| ..+++++|.-+ ++|..|-..|.|.|||++..+-. ..+
T Consensus 231 ----------------------------------sy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 231 ----------------------------------SYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMEL 275 (463)
T ss_pred ----------------------------------heecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhh
Confidence 22234 67899999877 77999999999999999865421 111
Q ss_pred e---cCCceEEEEEccC-----CCCEEEEEECCCcEEEEeCCC----CcEEEeccCCCcEEEEEECCCCCEEEEEECCC-
Q 002407 605 S---HSDYVTCIQFNPV-----DDRYFISGSLDAKVRIWSIPE----RQVVDWNDLHEMVTAACYTPDGQGALVGSYKG- 671 (927)
Q Consensus 605 ~---h~~~V~~v~fsp~-----dg~~L~sgs~Dg~I~IWDl~t----~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg- 671 (927)
. ...+|..|+.-+. .+.+|+..+.+ +..|.+.- ..++.....++...++.+.+-.+.+++.....
T Consensus 276 ~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~p 353 (463)
T KOG1645|consen 276 VANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSNP 353 (463)
T ss_pred hhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecCCC
Confidence 1 2234444332220 34444444433 55665532 22333444556777777777556655543321
Q ss_pred ------eEE-EEECCCCeeeeeccccc-ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCC
Q 002407 672 ------SCH-LYNTSENKLQQKSPINL-QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 672 ------~I~-IwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~ 743 (927)
.|. --|..++..+....-.. ..+..+-+.. ..+.-.+++..++.++..-..+.+||........... -.
T Consensus 354 n~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~--~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~ 430 (463)
T KOG1645|consen 354 NFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTT--QAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LS 430 (463)
T ss_pred CCccceeeeeeeccccCceeeeecccccCCcccccccc--cceeccccccEEEEecCCcceeEEeccchhheeeecc-cC
Confidence 011 11222332222211000 0000001111 1111233444344445566889999976544433332 23
Q ss_pred cceEEEEEec-C-CCEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTA-N-GRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fsp-d-g~~Lasgs~Dg~I~IWdl~s 774 (927)
.++..++... + +.||++-. |..++||..+.
T Consensus 431 epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 431 EPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred cceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 5666665433 2 34666665 55688887654
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0077 Score=72.01 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=134.3
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEecC
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSLDGRYLASAGEDCV-----IHVWQVV 486 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~-I~~vafSpdG~~LaSgs~Dgt-----VrVWdv~ 486 (927)
.+++.+.+...++.|..+|+|.+++.+.+. .+.+++|... |..+....+..+|++-++|+. |+||+++
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~------~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQL------IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccccee------eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 577778888889999999999999854332 3566788877 554544444579999888765 8999987
Q ss_pred cCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC
Q 002407 487 ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH 566 (927)
Q Consensus 487 ~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH 566 (927)
..+..... ..+... .++.. .+...
T Consensus 101 k~~~n~sP---------~c~~~~-----------------------------------------ri~~~------~np~~ 124 (933)
T KOG2114|consen 101 KVDKNNSP---------QCLYEH-----------------------------------------RIFTI------KNPTN 124 (933)
T ss_pred ccCCCCCc---------ceeeee-----------------------------------------eeecc------CCCCC
Confidence 54311100 000000 00000 00113
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCC--CCcE-EEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTC-LKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~--t~~~-~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
..++.+++.+.+ ..++.|-.+|.|..+.-+ ..+- ...+. ...+|+.++|.. ++..++....-..|.+|.+...
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecCC
Confidence 456788888888 889999999999988532 1111 12222 567999999987 7776444444567999999865
Q ss_pred c-EEEeccC-CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 641 Q-VVDWNDL-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 641 ~-~v~~~~~-~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
. ......+ ...+.|.++++....+++++ ...+.+|+.........+
T Consensus 204 ~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 204 TPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 5 2333343 45788888887655455554 457999998865554443
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.023 Score=68.18 Aligned_cols=162 Identities=18% Similarity=0.245 Sum_probs=105.1
Q ss_pred EccCCCC-EEEEEecCC-cEEEEEeCCCc-----EEEEeCCC------CcEE---EEEe-----cCCceEEEEEccCCCC
Q 002407 563 FQGHLDD-VLDLSWSKS-QHLLSSSMDKT-----VRLWHLSS------KTCL---KIFS-----HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 563 l~gH~~~-V~~l~~spd-~~L~Sgs~Dgt-----V~lWDl~t------~~~~---~~~~-----h~~~V~~v~fsp~dg~ 621 (927)
|+.+... |..+....+ ..|++.+.|+. |+||+++. .+++ +.++ ...++.+++.+. +-+
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~ 138 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLK 138 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-ccc
Confidence 3344444 333333333 57787777654 99999863 3444 3333 245788999998 888
Q ss_pred EEEEEECCCcEEEEe--C-CC--CcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc
Q 002407 622 YFISGSLDAKVRIWS--I-PE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWD--l-~t--~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~ 696 (927)
.+++|-.+|.|..+. + +. .+........++|+.+++..+++.++.......|.+|.+........ . .
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~-~-------l 210 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLK-V-------L 210 (933)
T ss_pred EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCccee-e-------e
Confidence 999999999999884 2 11 12223445568999999999998844444567899999985441111 1 1
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 697 RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 697 ~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
..++..+.|..|++... .+++ +.+..|.+|+......
T Consensus 211 d~~G~~lnCss~~~~t~-qfIc-a~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 211 DNNGISLNCSSFSDGTY-QFIC-AGSEFLYFYDSDGRGP 247 (933)
T ss_pred ccCCccceeeecCCCCc-cEEE-ecCceEEEEcCCCcce
Confidence 36778899999998654 3433 4455688888654333
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.002 Score=76.05 Aligned_cols=68 Identities=10% Similarity=0.226 Sum_probs=57.8
Q ss_pred EEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 570 VLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 570 V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
+++++|+|.. .|+.|-.-|.+.+|...+.+.-... .|+.+|..+.|+| +|..++++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 4569999984 5777778899999998877654443 3999999999999 99999999999999999875
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.002 Score=76.33 Aligned_cols=183 Identities=15% Similarity=0.101 Sum_probs=126.4
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+.+.|++++ +..|+-|+.+|.|++.+....- ...+.|... .. +|.++++|+.||+|.|-.+-+.+......
T Consensus 40 D~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 40 DAISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hHHHHHHhh-cceeeeccccceEEEEecCCcc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccceeEe
Confidence 455666664 4679999999999999977543 444445544 33 89999999999999999999988888888
Q ss_pred CCCcEEEEEECCC-----CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 648 LHEMVTAACYTPD-----GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 648 ~~~~V~sla~spd-----g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.+.++.+++++|+ .+.+++|+..| +.++.-+-....... ......++|.++.|..+ +++-..|
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------~l~~~eG~I~~i~W~g~----lIAWand 178 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------VLSEGEGPIHSIKWRGN----LIAWAND 178 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-------eeecCccceEEEEecCc----EEEEecC
Confidence 8999999999997 57899999999 777753311111111 11356789999999863 5556666
Q ss_pred CcEEEEECCcceEEEEee------cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 723 SRIRVVDGIDLVHKFKGF------RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 723 g~I~VwD~~~~~~~~~~~------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
--|+|||........... ........+.|.++.++++ | ..-+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 679999954432222111 1122234578877665444 4 34469999888
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.53 E-value=0.046 Score=60.49 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=144.8
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeeccccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+|.+++..++++..+.. .+.. -.+..+|||+.++++. ..-.|.+||..+-....++......
T Consensus 17 ~rv~viD~d~~k~lGmi~----~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~ 89 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID----TGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP 89 (342)
T ss_dssp EEEEEEETTTTEEEEEEE----EESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred ceEEEEECCCCcEEEEee----cccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence 478888877776655443 2222 2367899999888753 2447999999998877766422210
Q ss_pred Cc--cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 501 GH--LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 501 ~~--~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.. .........+.+++++........- .+ .+.++..+.+..--.-.+ ...+--+..
T Consensus 90 R~~~~~~~~~~~ls~dgk~~~V~N~TPa~-------SV--------------tVVDl~~~kvv~ei~~PG-C~~iyP~~~ 147 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADGKFLYVQNFTPAT-------SV--------------TVVDLAAKKVVGEIDTPG-CWLIYPSGN 147 (342)
T ss_dssp B--BS--GGGEEE-TTSSEEEEEEESSSE-------EE--------------EEEETTTTEEEEEEEGTS-EEEEEEEET
T ss_pred hheecccccceEEccCCcEEEEEccCCCC-------eE--------------EEEECCCCceeeeecCCC-EEEEEecCC
Confidence 10 0111122444444444332211110 00 233333322221111112 111211223
Q ss_pred cEEEEEeCCCcEEEEeCC-CCcEEEEEe-----cCCc-eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccC
Q 002407 579 QHLLSSSMDKTVRLWHLS-SKTCLKIFS-----HSDY-VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDL 648 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~-t~~~~~~~~-----h~~~-V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~ 648 (927)
..+.+-|.||.+.-..+. .|+...... -.++ +..-++.. .+..++--+.+|.|+--|+....... +.-.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 568899999999998887 455543221 1122 22334443 44556667889999998887765321 1110
Q ss_pred ----------CCcEEEEEECCCCCEEEEEECC----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 649 ----------HEMVTAACYTPDGQGALVGSYK----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 649 ----------~~~V~sla~spdg~~l~tgs~D----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
++...-+++++..+.|.+--.. ..|.+||+.+++.+..+.+. ..+.+|+.
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~V 296 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAV 296 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEE
Confidence 1233457777766555553221 14888999999988876532 34778999
Q ss_pred cCCCCcEEEEEE-CCCcEEEEECCc--ceEEEEe
Q 002407 709 APGSSSEVLVTS-ADSRIRVVDGID--LVHKFKG 739 (927)
Q Consensus 709 spdg~~~Llsgs-~Dg~I~VwD~~~--~~~~~~~ 739 (927)
+.+...+|++.+ .++.|.+||..+ .+.....
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 988776776654 579999999654 4444443
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.50 E-value=3.2e-05 Score=88.74 Aligned_cols=197 Identities=13% Similarity=0.155 Sum_probs=130.6
Q ss_pred CCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEE-E--EEecCCceEEEEEccCCCCEEEEEE----CCCcEEEEeC
Q 002407 568 DDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCL-K--IFSHSDYVTCIQFNPVDDRYFISGS----LDAKVRIWSI 637 (927)
Q Consensus 568 ~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~-~--~~~h~~~V~~v~fsp~dg~~L~sgs----~Dg~I~IWDl 637 (927)
..+.|+++.-+ ..++.|..+|.|-+-.++...-- . +-++..+.++++|++.|.+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34667776554 45788999999999888755432 2 2238889999999998888888773 2566999999
Q ss_pred CCCc--EE---Eecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 638 PERQ--VV---DWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 638 ~t~~--~v---~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
.++- +. .+.. ......++||..+.+.+++|.....+.++|++....... ...+..+..+...|-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~----------svnTk~vqG~tVdp~ 206 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS----------SVNTKYVQGITVDPF 206 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh----------hhhhhhcccceecCC
Confidence 8761 11 1222 334667899999999999999999999999984322111 123445667777774
Q ss_pred CCcEEEEEECCCcEEEEE-CCcceEEEEeecC-----CcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCC
Q 002407 712 SSSEVLVTSADSRIRVVD-GIDLVHKFKGFRN-----TNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD-~~~~~~~~~~~~~-----~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~ 775 (927)
...+ ++...|+.|.+|| ..+....+....+ ...+..++|.|... .+++.. ..++|+++++..-
T Consensus 207 ~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 207 SPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CCCc-eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 4434 4555599999999 3333332222211 22477889988532 344444 4567999998754
No 328
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.47 E-value=0.025 Score=60.76 Aligned_cols=204 Identities=14% Similarity=0.252 Sum_probs=117.1
Q ss_pred EEccCCCCEEEEEecCC-cE-EEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeC
Q 002407 562 SFQGHLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~-L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl 637 (927)
.+.+-...+..|+|.|+ +. +++....+.|...+. .|+.++.+. --...-.|++.. ++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence 45566677999999997 65 555666788888887 478888776 335678888876 6766666556888999988
Q ss_pred CCC--c--E-----EE--ec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC---Ceeee-ecccccccccccCCCC
Q 002407 638 PER--Q--V-----VD--WN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE---NKLQQ-KSPINLQNKKKRSHQR 701 (927)
Q Consensus 638 ~t~--~--~-----v~--~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---~~~~~-~~~i~~~~~~~~~h~~ 701 (927)
... . . +. .. ..+..+-.++|.|.++.|+++-...-..||.+.. ..... .....+.. ......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 171 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--DKLFVR 171 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---HT--SS
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc--ccceec
Confidence 331 1 1 11 11 1335689999999988888888777777777654 11111 11111110 123455
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecC-------CcceEEEEEecCCCEEEEEECCCcEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRN-------TNSQISASLTANGRYVVSASEDSYVYVW 770 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~-------~~~v~sv~fspdg~~Lasgs~Dg~I~IW 770 (927)
.+.+++++|....+++.......|.++|... .+..+..... -...-.++|.++|++.++ ++-+..|+|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 6899999998887888888889999999543 3333333221 123557999999965554 466666665
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.44 E-value=0.0022 Score=74.14 Aligned_cols=115 Identities=17% Similarity=0.280 Sum_probs=85.3
Q ss_pred CCEEEEEecCC--cEEEEE----eCCCc----EEEEeCCCCcEE----EEEecCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 568 DDVLDLSWSKS--QHLLSS----SMDKT----VRLWHLSSKTCL----KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 568 ~~V~~l~~spd--~~L~Sg----s~Dgt----V~lWDl~t~~~~----~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
....++.|+.. ..+.|. +.+|. -.+|++...+.. ..+.....|.|++++| +...|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 34466777753 344443 33443 346666655432 2344889999999999 999999999999999
Q ss_pred EEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 634 IWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 634 IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+||...+.. ......-.++.++|+|+|..+++|+..|.+.+||+.-..+.
T Consensus 285 LyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 285 LYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 999876643 34455667899999999999999999999999998765443
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.43 E-value=0.0019 Score=77.26 Aligned_cols=148 Identities=14% Similarity=0.193 Sum_probs=114.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC---------CCcEEEEeCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---------DAKVRIWSIP 638 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~---------Dg~I~IWDl~ 638 (927)
.|+-|.. .+..+.+|...|+|.+-|..+.+.++++. |++.|.++.. .|++|++++. |..|+|||++
T Consensus 179 ~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 179 GVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred ceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhh
Confidence 3555544 23678899999999999999999999998 9999998887 5788999876 5568999999
Q ss_pred CCcEEEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECC---CCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
..+.+.-+..+....-+.|+|. ...+++.+..|.+.+-|.. +...-.. . .......+..+.+++.+.
T Consensus 255 mmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~-~-------v~p~~s~i~~fDiSsn~~- 325 (1118)
T KOG1275|consen 255 MMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK-M-------VNPNGSGISAFDISSNGD- 325 (1118)
T ss_pred hhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee-E-------EccCCCcceeEEecCCCc-
Confidence 9887766666655666778884 4568888999999999833 2211111 1 124455699999999887
Q ss_pred EEEEEECCCcEEEEE
Q 002407 715 EVLVTSADSRIRVVD 729 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD 729 (927)
.++.+..+|.|.+|-
T Consensus 326 alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 ALAFGDHEGHVNLWA 340 (1118)
T ss_pred eEEEecccCcEeeec
Confidence 899999999999997
No 331
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.36 E-value=0.045 Score=59.63 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=107.9
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE---------------EEecCCceEEEE-EccCCCCEEEEEECCCcE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK---------------IFSHSDYVTCIQ-FNPVDDRYFISGSLDAKV 632 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~---------------~~~h~~~V~~v~-fsp~dg~~L~sgs~Dg~I 632 (927)
|..|...++ +.|++-+ |+.|+++++..-.... .+.....+..++ -....+...+......+|
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i 116 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKI 116 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEE
Confidence 888888887 5555544 5999999987644333 222333444444 112134444444455688
Q ss_pred EEEeCCCC-----cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccc---ccccCCCCCeE
Q 002407 633 RIWSIPER-----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN---KKKRSHQRKIT 704 (927)
Q Consensus 633 ~IWDl~t~-----~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~---~~~~~h~~~Vt 704 (927)
.+|.+... +....+...+.+..++|. +..+++|..+ ...+.|+.++............ ........++.
T Consensus 117 ~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 193 (275)
T PF00780_consen 117 LIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG 193 (275)
T ss_pred EEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE
Confidence 88877552 455667777899999998 6678888754 4788899877655443211110 01111223344
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEEC-CcceE--EEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDG-IDLVH--KFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~-~~~~~--~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.+.... +. +|+ +..+ .-.+.|. +.... .+.. ......+++ ...||+..+.++ |.||++.+++...
T Consensus 194 ~~~~~~-~e-~Ll-~~~~-~g~fv~~~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 194 IFQLSD-NE-FLL-CYDN-IGVFVNKNGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQ 261 (275)
T ss_pred EEEeCC-ce-EEE-Eecc-eEEEEcCCCCcCcccEEEc---CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEE
Confidence 444443 32 333 3333 2233331 21111 1111 123445555 345788776644 9999999986543
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0066 Score=70.39 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=121.8
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEE--eCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCC
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSS--SMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDA 630 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sg--s~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg 630 (927)
+.....+..-...+..-.|+|+ ..++.. ... ..+.++++.+++..........-...+|+| +++.|+ +...||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fsp-DG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSP-DGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCC-CCCEEEEEECCCC
Confidence 3444455555566777889988 333222 222 459999999998877777666677789999 776665 455566
Q ss_pred c--EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 631 K--VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 631 ~--I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
. |.+.|+.++....+......-+.-.|+|||++++-.+.. | .|.++++........ . .....-..
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T---------~~~~~~~~ 330 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-T---------FSGGGNSN 330 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-e---------ccCCCCcC
Confidence 5 666788888766655555555578899999998877654 3 477788877665322 1 11111125
Q ss_pred EEEcCCCCcEEEEEECCCc--EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 706 FQFAPGSSSEVLVTSADSR--IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~--I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
-.|+|+|+.+++....+|. |.+.|...... .............+|.++|+.++..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccCC
Confidence 6799999865555544555 44444322221 22222223333557788888777665433
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.016 Score=68.87 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
..+++.|-.-+.+.+|.+..++.-.+. ..|+.+|..+.||++|..|.|+..-|.|.+|.+..-
T Consensus 71 ~~vLa~gwe~g~~~v~~~~~~e~htv~-----~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 71 EFVLAQGWEMGVSDVQKTNTTETHTVV-----ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred HHHHhhccccceeEEEecCCceeeeec-----cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 344678888999999998888765443 469999999999999999999999999999998743
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.033 Score=65.61 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=108.6
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~ 491 (927)
...+|.+....++..|...|.|.+|+...+++..+. ..+-.+.+..+..+++..++|.|+..|.|.|+.+.....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~----~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK----NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccc----ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 346777888889999999999999998877765433 234566777788899988999999999999998765321
Q ss_pred ceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEE
Q 002407 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVL 571 (927)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~ 571 (927)
..+ .++... -+.|...|+
T Consensus 111 ~~~---------------------~~~t~~-----------------------------------------d~~~~~rVT 128 (726)
T KOG3621|consen 111 RDL---------------------DYVTPC-----------------------------------------DKSHKCRVT 128 (726)
T ss_pred Ccc---------------------eeeccc-----------------------------------------cccCCceEE
Confidence 111 000000 012888999
Q ss_pred EEEecCC-cEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 572 DLSWSKS-QHLLSSSMDKTVRLWHLSSK-----TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~DgtV~lWDl~t~-----~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+++|+++ .+|++|...|+|.+-.+.+. ....++.....|..|.+. .+.+|++... ...+++...+.
T Consensus 129 al~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 129 ALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred EEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhh--hhheeecchhH
Confidence 9999999 67999999999999888772 112223356777777775 3544554433 23455555444
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.29 E-value=0.065 Score=63.76 Aligned_cols=180 Identities=12% Similarity=0.175 Sum_probs=102.4
Q ss_pred eCCCcEEEEeCCCCcEEEEEecC-C--------------------ce-EEEEEccCCCCEEEEEECCC------------
Q 002407 585 SMDKTVRLWHLSSKTCLKIFSHS-D--------------------YV-TCIQFNPVDDRYFISGSLDA------------ 630 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~h~-~--------------------~V-~~v~fsp~dg~~L~sgs~Dg------------ 630 (927)
..++.|..+|..+++.+..+... . .| ...++.+ .+.+++.++.++
T Consensus 172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCC
Confidence 34678888888888887776521 1 01 1234444 456777777665
Q ss_pred ------cEEEEeCCCCcEEEeccCC-CcE------EEEEEC----CCCC---EEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 631 ------KVRIWSIPERQVVDWNDLH-EMV------TAACYT----PDGQ---GALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 631 ------~I~IWDl~t~~~v~~~~~~-~~V------~sla~s----pdg~---~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
.|.-+|+.+++.+-..... ... ....+. -+|. .+++++.+|.+..+|..+++.+......
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~ 330 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV 330 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence 6889999999887543221 100 111111 1343 6788889999999999999987764321
Q ss_pred cccccccCCCCCeEEEEEcCCCCcEEEEE------------------ECCCcEEEEECCcceEEEEeecCC--------c
Q 002407 691 LQNKKKRSHQRKITGFQFAPGSSSEVLVT------------------SADSRIRVVDGIDLVHKFKGFRNT--------N 744 (927)
Q Consensus 691 ~~~~~~~~h~~~Vtsl~fspdg~~~Llsg------------------s~Dg~I~VwD~~~~~~~~~~~~~~--------~ 744 (927)
...++..| + .+.++ ..++.|.-+|..+....++..... .
T Consensus 331 ------------~~~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 331 ------------EQPMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred ------------ccccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence 01112222 1 12221 234566666654444333332110 1
Q ss_pred ceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 745 SQISASLTANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 745 ~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
+...-...-.+.+|+.++.||.|+.+|.++++..-+
T Consensus 396 ~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~ 431 (488)
T cd00216 396 PHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK 431 (488)
T ss_pred cccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence 111111112467888889999999999999876543
No 336
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.27 E-value=0.085 Score=59.97 Aligned_cols=277 Identities=13% Similarity=0.112 Sum_probs=150.2
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC----c-
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG----H- 502 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~----~- 502 (927)
+..+.+.+|+..+++...+.. ....+....|||+|++||-.. ++.|.+++..++........+ ... .
T Consensus 20 s~~~~y~i~d~~~~~~~~l~~------~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~ 91 (353)
T PF00930_consen 20 SFKGDYYIYDIETGEITPLTP------PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVP 91 (353)
T ss_dssp EEEEEEEEEETTTTEEEESS-------EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB-
T ss_pred ccceeEEEEecCCCceEECcC------CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCcc
Confidence 345678889988877665543 267788999999999999886 678999998777433222111 111 0
Q ss_pred --------cccEEEEccCCCCCeecccccCCc-eeee---cccccc----ccccc-----ccCcccccceEeecCCCceE
Q 002407 503 --------LNMLLLANGSPEPTSLSPKHLDNH-LEKK---RRGRSI----NRKSL-----SLDHMVVPETVFALSDKPIC 561 (927)
Q Consensus 503 --------~~~v~~v~~spd~~~la~~~~~~~-i~~~---~~~~~~----~~~~~-----~~~~~~~~~~v~~~s~k~i~ 561 (927)
...-..+-|+||+..|+....+.. +... ...... ....+ ..........++++......
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence 122246679999998887654432 1111 000000 00000 00011112234455444332
Q ss_pred EEc------cCCCCEEEEEecCCcE-EEEE--eCCC---cEEEEeCCCCcEEEEEe--cCCce---EEEEEc-cCCCCEE
Q 002407 562 SFQ------GHLDDVLDLSWSKSQH-LLSS--SMDK---TVRLWHLSSKTCLKIFS--HSDYV---TCIQFN-PVDDRYF 623 (927)
Q Consensus 562 ~l~------gH~~~V~~l~~spd~~-L~Sg--s~Dg---tV~lWDl~t~~~~~~~~--h~~~V---~~v~fs-p~dg~~L 623 (927)
.+. .-..-+..+.|.+++. |+.. ..+. .+.+.|..++.+...+. ....| ..+.|. +.+..+|
T Consensus 172 ~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l 251 (353)
T PF00930_consen 172 ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFL 251 (353)
T ss_dssp EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEE
T ss_pred EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEE
Confidence 222 2344588899998844 5443 3333 37777888776654443 33332 355665 6355666
Q ss_pred EEEECCCc--EEEEeCCCCcEEEeccCCCcEEE-EEECCCCCEEE-EEECC----CeEEEEECC-CCeeeeecccccccc
Q 002407 624 ISGSLDAK--VRIWSIPERQVVDWNDLHEMVTA-ACYTPDGQGAL-VGSYK----GSCHLYNTS-ENKLQQKSPINLQNK 694 (927)
Q Consensus 624 ~sgs~Dg~--I~IWDl~t~~~v~~~~~~~~V~s-la~spdg~~l~-tgs~D----g~I~IwDl~-~~~~~~~~~i~~~~~ 694 (927)
.....+|. |.+++...+....+....-.|.. +.++++++.|. ++..+ ..|+.-++. .+......
T Consensus 252 ~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT------- 324 (353)
T PF00930_consen 252 WISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT------- 324 (353)
T ss_dssp EEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS-------
T ss_pred EEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc-------
Confidence 66667776 55567777776666666667754 67888877655 44432 245555666 44443321
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.....-..+.|+|+++.++...+.-
T Consensus 325 ---~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 325 ---CEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ---TTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ---CCCCCceEEEECCCCCEEEEEEcCC
Confidence 1111116899999998666666543
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.27 E-value=0.043 Score=65.23 Aligned_cols=174 Identities=12% Similarity=0.104 Sum_probs=114.0
Q ss_pred eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC----cEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 585 SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
-..+.+.+.|..+.+....+.-......++++| +++++++.+.+. ++..-+..+...+..+.... ...+.++
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---iea~vkd 287 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---IEEAVKA 287 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHH---HHHhhhC
Confidence 344667888888887777776566667889999 888888776321 23333322222111111111 0133567
Q ss_pred CCEEEEEECCCeEEEEECCC-----CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 661 GQGALVGSYKGSCHLYNTSE-----NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~-----~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
|++..++ ++.|.+.|..+ ......+ .-......+.++|||+.+++++..+.+|.|+|..+...
T Consensus 288 GK~~~V~--gn~V~VID~~t~~~~~~~v~~yI----------PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 288 GKFKTIG--GSKVPVVDGRKAANAGSALTRYV----------PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred CCEEEEC--CCEEEEEECCccccCCcceEEEE----------ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 8877763 67899999987 3333332 34566788999999997777778899999999765442
Q ss_pred EE-----------EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 736 KF-----------KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 736 ~~-----------~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.+ ....-.......+|+++|+...+.--|..|..|++..
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11 1111122234578999999888889999999999986
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.26 E-value=0.24 Score=55.43 Aligned_cols=173 Identities=17% Similarity=0.281 Sum_probs=113.9
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCC------CCEEEEEEC----------CCcEEEEeCCCC-----c--E
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVD------DRYFISGSL----------DAKVRIWSIPER-----Q--V 642 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~d------g~~L~sgs~----------Dg~I~IWDl~t~-----~--~ 642 (927)
..|+|.|..+.+.+..+. ....+++++..... ..+|+.|.. .|.|.++++... + .
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368999999888887765 44455555433211 467777754 288999999884 3 2
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe-eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK-LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~-~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
+.....++.|++++-- .+ +|+++. .+.|.+|++...+ +...... .....++++....+ ++++|..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~--------~~~~~i~sl~~~~~---~I~vgD~ 147 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFY--------DSPFYITSLSVFKN---YILVGDA 147 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE---------BSSSEEEEEEETT---EEEEEES
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhhee--------cceEEEEEEecccc---EEEEEEc
Confidence 3345567889998876 33 455544 5899999998887 5444322 23346777776643 8899988
Q ss_pred CCcEEEE--ECC-cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 722 DSRIRVV--DGI-DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 722 Dg~I~Vw--D~~-~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
-..|.++ +.. .....+........++++.|-++++.++.+..+|+|.++.+..
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 8888876 532 2233333333466688888886768999999999999999964
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.11 Score=60.36 Aligned_cols=176 Identities=11% Similarity=0.202 Sum_probs=93.1
Q ss_pred cEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE------EEeccCC-CcEEEEEECCC
Q 002407 589 TVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV------VDWNDLH-EMVTAACYTPD 660 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~------v~~~~~~-~~V~sla~spd 660 (927)
.|+||+.. |+.+..+. ..+.|.++.|+. + ..|++...||.+++||+..... +...... ..+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 58999876 44555555 348999999986 4 4566777999999999864430 1101110 11222233334
Q ss_pred CCEEEEEECCCeEEEEECCCCeee-eecccccccccccCC-CCCeEE-EEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQ-QKSPINLQNKKKRSH-QRKITG-FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~-~~~~i~~~~~~~~~h-~~~Vts-l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
| +++-..++.+.+..-...... .... ..+......+ ...... ..+..+.. ..+....++.|.+.+......
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~-~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~-- 212 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLP-EIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ-- 212 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccc-cCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc--
Confidence 5 444444555544432221111 1100 0000000000 011111 23444433 344445556666554322211
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
....+++..+++||+|++||.-..+|.+.|...+-.
T Consensus 213 --i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 --IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred --ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 122467999999999999999999999998876543
No 340
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.21 E-value=0.00026 Score=81.57 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=121.8
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEecCcCcccceee
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAG----EDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs----~DgtVrVWdv~~~~~~~~l~ 495 (927)
+.++..|...|+|-+-....+..+. .....+|....++++|++ |.+.||.|- .|-.+.|||+.+.-....
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs---~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-- 144 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSS---AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-- 144 (783)
T ss_pred hhhhhhccccCceEEeecCCccccc---ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc--
Confidence 3456777788888777665554441 123478899999999998 667888773 366799999876521000
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
...... . +.......++|
T Consensus 145 -------------------e~~~fs------------------------------------~-------~~l~gqns~cw 162 (783)
T KOG1008|consen 145 -------------------ESPLFS------------------------------------S-------STLDGQNSVCW 162 (783)
T ss_pred -------------------cccccc------------------------------------c-------ccccCcccccc
Confidence 000000 0 01122336778
Q ss_pred cCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeC-CCC-cEEEec-----c
Q 002407 576 SKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI-PER-QVVDWN-----D 647 (927)
Q Consensus 576 spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl-~t~-~~v~~~-----~ 647 (927)
-.+ ..+++|.....|.++|++........-.+..+..+...|...+|+++-. ||.|.+||. ..- .++... .
T Consensus 163 lrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~ 241 (783)
T KOG1008|consen 163 LRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENK 241 (783)
T ss_pred ccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCC
Confidence 777 6677888888999999984332222224556778888887788887765 999999993 321 222221 2
Q ss_pred CCCcEEEEEECCC--CCEEEEEECCCeEEEEECCC
Q 002407 648 LHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 648 ~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~ 680 (927)
....+..++|.|- |...+..-..++|++||+..
T Consensus 242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 2346999999994 33333444567899999864
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.08 E-value=0.051 Score=62.49 Aligned_cols=203 Identities=16% Similarity=0.209 Sum_probs=119.2
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE-------------------------------------------EEE
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL-------------------------------------------KIF 604 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~-------------------------------------------~~~ 604 (927)
.|+.+.|.++ ..|+.+...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788999887 88999999999998854321110 011
Q ss_pred e-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC---------CCcEEEEEECC-----CC---CEEEE
Q 002407 605 S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL---------HEMVTAACYTP-----DG---QGALV 666 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~---------~~~V~sla~sp-----dg---~~l~t 666 (927)
. ..++|++++.+ +--+++.|..+|.+.|.|++...++..... ...++++.|.. |+ -.+++
T Consensus 83 ~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 1 45789999997 566999999999999999998887753221 23677887762 33 47899
Q ss_pred EECCCeEEEEECCC---CeeeeecccccccccccCCCCCeEEEE-EcCCC-------------------CcEEEEEECCC
Q 002407 667 GSYKGSCHLYNTSE---NKLQQKSPINLQNKKKRSHQRKITGFQ-FAPGS-------------------SSEVLVTSADS 723 (927)
Q Consensus 667 gs~Dg~I~IwDl~~---~~~~~~~~i~~~~~~~~~h~~~Vtsl~-fspdg-------------------~~~Llsgs~Dg 723 (927)
|+..|.+.+|.+-- +.....+ .... ..+..+|..+. |..+. -.-+++...+.
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~----~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQF----AGAT-TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEE----EEEE---SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred EeCCCCEEEEEEecCCCCceEEEE----eecc-ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 99999999998741 1111111 1100 23445555554 32211 01356666788
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEe-----cCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLT-----ANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fs-----pdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
.|+|+...+.....+..........+++- ..+..|++-..+|.|++|.+-.-++.
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence 89999976655555555332333344552 35678888999999999999875544
No 342
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.04 E-value=0.1 Score=59.31 Aligned_cols=81 Identities=10% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-----------------
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----------------- 649 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----------------- 649 (927)
.+.+.|+|+.+++..........+....|+| +++.|+... ++.|.++++.++...++....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4679999999987766555567899999999 899888875 578999999887665432211
Q ss_pred -CcEEEEEECCCCCEEEEEEC
Q 002407 650 -EMVTAACYTPDGQGALVGSY 669 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~ 669 (927)
..-..+-|+||+++|+....
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceEECCCCCEEEEEEE
Confidence 12356889999999887543
No 343
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.02 E-value=0.071 Score=59.70 Aligned_cols=149 Identities=20% Similarity=0.271 Sum_probs=90.7
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc-EEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC--CC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ER 640 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~-~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~--t~ 640 (927)
..++|++|+-. +++|+.+. .+.|.+|++...+ ....-. ....++++... +++|+.|.....|.++... ..
T Consensus 87 ~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 87 VKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp ESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE
T ss_pred ecCcceEhhhh-CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEccCC
Confidence 46789988876 44544444 4889999999888 555444 33466666654 5699999988888877543 33
Q ss_pred cEEE--eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC---------eeeeecccccccccccCCCCCeEEE---
Q 002407 641 QVVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN---------KLQQKSPINLQNKKKRSHQRKITGF--- 706 (927)
Q Consensus 641 ~~v~--~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~---------~~~~~~~i~~~~~~~~~h~~~Vtsl--- 706 (927)
++.. .-.....++++.|-+++..++++..+|.+.++..... ++..... ......|+++
T Consensus 162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~--------f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISS--------FHLGDIVNSFRRG 233 (321)
T ss_dssp -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEE--------EE-SS-EEEEEE-
T ss_pred EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEE--------EECCCccceEEEE
Confidence 3332 2223457899999877789999999999999987632 1111111 1334556766
Q ss_pred EEcC--CCC-----cEEEEEECCCcEEE
Q 002407 707 QFAP--GSS-----SEVLVTSADSRIRV 727 (927)
Q Consensus 707 ~fsp--dg~-----~~Llsgs~Dg~I~V 727 (927)
.+.| .+. ..++.++.+|.|.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEE
Confidence 4444 122 14777778887774
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.02 E-value=0.39 Score=51.65 Aligned_cols=157 Identities=9% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCEEEEEecCCcEEEEEe-CCCcEEEEeCCCC--c--E--EEEEe------cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSK--T--C--LKIFS------HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~--~--~--~~~~~------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
+..-.|++..++.++... .++.+.++++... . . ...+. +...+-.++|.| ..+.|+.+-...-..|
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRL 143 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhh
Confidence 456778887776666655 4888998888422 1 1 12222 445689999999 5555666666666667
Q ss_pred EeCCC---CcEE---Ee---c---cCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 635 WSIPE---RQVV---DW---N---DLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 635 WDl~t---~~~v---~~---~---~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
|.+.. ...+ .. . ..-..+.+++++|. +.+++.......|..+| .+++.+..+.+..........-.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~ 222 (248)
T PF06977_consen 144 YEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIP 222 (248)
T ss_dssp EEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---
T ss_pred EEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccC
Confidence 66543 1111 11 1 12246889999995 45666666778899999 56666665544321111112234
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..-+|+|.++|. |.+.+.-+..++|
T Consensus 223 QpEGIa~d~~G~--LYIvsEpNlfy~f 247 (248)
T PF06977_consen 223 QPEGIAFDPDGN--LYIVSEPNLFYRF 247 (248)
T ss_dssp SEEEEEE-TT----EEEEETTTEEEEE
T ss_pred CccEEEECCCCC--EEEEcCCceEEEe
Confidence 578999999884 6666676666654
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.99 E-value=0.0018 Score=45.75 Aligned_cols=36 Identities=42% Similarity=0.830 Sum_probs=32.6
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQ 484 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWd 484 (927)
...+.+|...|+++.|.+++.++++++.|+.|++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355678999999999999999999999999999996
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.18 Score=58.00 Aligned_cols=201 Identities=12% Similarity=0.140 Sum_probs=138.4
Q ss_pred EEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC---CCcEEEEeCCCCcEEEe
Q 002407 571 LDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIPERQVVDW 645 (927)
Q Consensus 571 ~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl~t~~~v~~ 645 (927)
..++.++. . .+++...++.|.+.|..+........-......++++| +++.+..+.. ++.+.+.|-.+.++...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 34556665 3 35555567899999998888888877555888999999 7766665554 68899999998888776
Q ss_pred ccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC--
Q 002407 646 NDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-- 722 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-- 722 (927)
.........+++.|+|+.+++.. .++.|.++|........ ..... ..........+.+.|++....++...+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~----~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS----LVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc----ccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44444448999999999776665 78899999987766553 11000 012334456788999998555555444
Q ss_pred CcEEEEECCcceEEEEeecCCc-ceEEEEEecCCCEEEEEECC-CcEEEEECCCCCC
Q 002407 723 SRIRVVDGIDLVHKFKGFRNTN-SQISASLTANGRYVVSASED-SYVYVWKYEAESR 777 (927)
Q Consensus 723 g~I~VwD~~~~~~~~~~~~~~~-~v~sv~fspdg~~Lasgs~D-g~I~IWdl~s~~~ 777 (927)
+.+.+.|............... ....+.++|+|+++.+.... +.+.+-|..+...
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 6888888655433332111111 45568899999999888544 7788888877543
No 347
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.97 E-value=0.011 Score=72.42 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=99.5
Q ss_pred CCCEEEEE-ECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC-------CEEEEEECCCeEEEEECCCCe--eeeecc
Q 002407 619 DDRYFISG-SLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG-------QGALVGSYKGSCHLYNTSENK--LQQKSP 688 (927)
Q Consensus 619 dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg-------~~l~tgs~Dg~I~IwDl~~~~--~~~~~~ 688 (927)
+.++|+.- .....|+-.|+..|+++.....+..+.-..|.|+. ...++|-.+..+..||++-.. ++.. +
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-c
Confidence 34444443 34577999999999999865555544455565643 345778889999999998643 2211 1
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
. +.-......+|++-..+| .|++|+.+|.||+||......+-.......+|+.+..+.||++|++.+ +..|.
T Consensus 571 ----~-k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLl 642 (794)
T PF08553_consen 571 ----S-KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLL 642 (794)
T ss_pred ----c-cccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEE
Confidence 0 011345567888888877 799999999999999432222222233467899999999999998776 56688
Q ss_pred EEECC
Q 002407 769 VWKYE 773 (927)
Q Consensus 769 IWdl~ 773 (927)
|++..
T Consensus 643 Li~t~ 647 (794)
T PF08553_consen 643 LIDTL 647 (794)
T ss_pred EEEEe
Confidence 88763
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.91 E-value=0.47 Score=53.62 Aligned_cols=173 Identities=20% Similarity=0.255 Sum_probs=86.6
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC---CCc-EEEEeCC--CCcEEEeccC--CCcEEEEEECC
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL---DAK-VRIWSIP--ERQVVDWNDL--HEMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~---Dg~-I~IWDl~--t~~~v~~~~~--~~~V~sla~sp 659 (927)
..|.--|+.+++...++.-+..+..+.|+|.+..+|+-|-. +.. -|||-++ .........+ ...+..=-|.|
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~ 247 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP 247 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T
T ss_pred ceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC
Confidence 34667788999988888888899999999977777777654 221 3667554 3333332222 24566667999
Q ss_pred CCCEEEEEEC-----CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCC----------
Q 002407 660 DGQGALVGSY-----KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADS---------- 723 (927)
Q Consensus 660 dg~~l~tgs~-----Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg---------- 723 (927)
||..|.--+. +..|.-+|+.+++.....+. .....+..++++. |++| +.|.
T Consensus 248 DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----------p~~~H~~ss~Dg~--L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 248 DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-----------PWCSHFMSSPDGK--LFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE------------SEEEEEE-TTSS--EEEEEE-------------
T ss_pred CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-----------CceeeeEEcCCCC--EEEecCCCCCccccccccc
Confidence 9987665322 33577778887654432211 1234555667775 4444 3332
Q ss_pred ------cEEEEECCcceE-EEEeec-------C--CcceEEEEEecCCCEEEEEE-CCCcEEEEECC
Q 002407 724 ------RIRVVDGIDLVH-KFKGFR-------N--TNSQISASLTANGRYVVSAS-EDSYVYVWKYE 773 (927)
Q Consensus 724 ------~I~VwD~~~~~~-~~~~~~-------~--~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~ 773 (927)
-|++++...... .+..|. + ...=....|+|||++|+-.| ..|...||-++
T Consensus 315 ~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred eecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 355566433221 122221 0 11124579999999877554 57776666543
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.90 E-value=0.066 Score=63.71 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCC-----CcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCc------------EEEecc
Q 002407 586 MDKTVRLWHLSS-----KTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ------------VVDWND 647 (927)
Q Consensus 586 ~DgtV~lWDl~t-----~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~------------~v~~~~ 647 (927)
.++.|.+.|..+ .+.+..+.-......|.++| |++++++++ .+.+|.|.|+.+.+ ++....
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999998 46777777888899999999 888876654 58899999998754 233344
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
........+|.++|..+.+-.-|..|..|++..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 445667889999999888888999999999876
No 350
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.82 E-value=0.041 Score=50.99 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=73.2
Q ss_pred eEEEEEccCCC---CEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 610 VTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 610 V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
|++|++...++ +.|++|+.|..|++|+ ..+++......+.|+.++-... ..|+.+..+|+|-+|+-.......
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi- 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI- 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee-
Confidence 56677665333 6899999999999997 4466677777788999988776 569999999999999864322211
Q ss_pred cccccccccccCCCCCeEEEEEcC---CCCcEEEEEECCCcEEE
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAP---GSSSEVLVTSADSRIRV 727 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fsp---dg~~~Llsgs~Dg~I~V 727 (927)
.....++++++.. +|...|++|-.+|.|-+
T Consensus 78 -----------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 -----------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -----------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2233366666443 44557899988888753
No 351
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.81 E-value=0.63 Score=49.16 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccC
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~ 698 (927)
...+++.|+..+.+.--|..++.++-.......+.+-+.- -|.+++.|+..|.+++.+..++.....++..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 3457788888898999999999887655555555544433 4778999999999999999999776665431
Q ss_pred CCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 699 HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 699 h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..-.+ ..+..+++. ++..++.|+..+..|.......++..-....-.+-++.+-...|..+...|.|
T Consensus 93 ~~vk~-~a~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 93 ETVKV-RAQCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred hhhcc-ceEEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 11111 233556655 89999999999999988777777654333333344555522233333334443
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.047 Score=64.42 Aligned_cols=121 Identities=8% Similarity=0.166 Sum_probs=89.9
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
+...|.--++.. .+++++.|+.-|.|++|+-..++...... .+..+..++++++..++|+|+..|.|.++.+.....
T Consensus 32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 344444444444 78999999999999999988876654433 456777888999999999999999999998877433
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.....+.. -.+.|...|++++|++++. .+.+|...|+|..-.+.
T Consensus 111 ~~~~~~t~---~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 111 RDLDYVTP---CDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELD 154 (726)
T ss_pred Ccceeecc---ccccCCceEEEEEeccccc-EEeecCCCceEEEEEec
Confidence 22221111 1135788999999999987 79999999999886543
No 353
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.78 E-value=2.4 Score=52.46 Aligned_cols=182 Identities=13% Similarity=0.131 Sum_probs=109.3
Q ss_pred EEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEccCCCCEEEEEECC--------------CcEEEEeCCCCcEEE
Q 002407 581 LLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLD--------------AKVRIWSIPERQVVD 644 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--------------g~I~IWDl~t~~~v~ 644 (927)
|+++ ..+.+++..+..-+. ++++........+++.+ ....+.+.+.- ..++++|-.+-+.+.
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~ 764 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLS 764 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEe
Confidence 4443 445677776654332 33444555566677765 34444443321 137778877777665
Q ss_pred eccCC--C---cEEEEEECCC-CCEEEEEEC----------CCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEE
Q 002407 645 WNDLH--E---MVTAACYTPD-GQGALVGSY----------KGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 645 ~~~~~--~---~V~sla~spd-g~~l~tgs~----------Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
..... + .+.++.|..| +.++++|+. .|.|.+|.+.. +++..... ..-.+.+.++.
T Consensus 765 ~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e--------~~v~Gav~aL~ 836 (1096)
T KOG1897|consen 765 SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE--------TVVKGAVYALV 836 (1096)
T ss_pred eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee--------eeeccceeehh
Confidence 44333 2 3455558877 788888864 47888888776 33322211 23345566655
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
... | .+.++-...|++|+..+............++..+.+.-.|..++.|.--+.|.+-.++..+
T Consensus 837 ~fn-g---kllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 837 EFN-G---KLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred hhC-C---eEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 443 2 3445667789999855443333333445677888888899999999988888877776654
No 354
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.66 E-value=1.4 Score=51.03 Aligned_cols=180 Identities=12% Similarity=0.081 Sum_probs=90.1
Q ss_pred cEEEEeCCCCcE--EEEEe--cCCc-eEEEEEccCCCCEEEEEECC----CcEEEEeCCCC-----cEEEeccCCCcEEE
Q 002407 589 TVRLWHLSSKTC--LKIFS--HSDY-VTCIQFNPVDDRYFISGSLD----AKVRIWSIPER-----QVVDWNDLHEMVTA 654 (927)
Q Consensus 589 tV~lWDl~t~~~--~~~~~--h~~~-V~~v~fsp~dg~~L~sgs~D----g~I~IWDl~t~-----~~v~~~~~~~~V~s 654 (927)
.|++|.+.+... ..+|. .... ...+..++ ++++|+..... ..+.+.++..+ ....+......+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 488888887643 34554 2233 66788898 88887754432 34788888774 44444443333433
Q ss_pred EEECCCCCEEEEEEC---CCeEEEEECCCCeeeeecccccccccccCCCC--CeEEEEEcCCCCcEEEEEECCC--cEEE
Q 002407 655 ACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQR--KITGFQFAPGSSSEVLVTSADS--RIRV 727 (927)
Q Consensus 655 la~spdg~~l~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~--~Vtsl~fspdg~~~Llsgs~Dg--~I~V 727 (927)
..-+..+.+++.... .+.|...++..........+ ...+.. .+..+... +..+++....++ .|++
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~------l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV------LIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE------EE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE------EcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEE
Confidence 332334444443322 35677777776653111100 013333 45555554 343555555554 4788
Q ss_pred EECC-cceEEEEeecCCcceEEEEEecCCCEEE-EEE---CCCcEEEEECCCCCC
Q 002407 728 VDGI-DLVHKFKGFRNTNSQISASLTANGRYVV-SAS---EDSYVYVWKYEAESR 777 (927)
Q Consensus 728 wD~~-~~~~~~~~~~~~~~v~sv~fspdg~~La-sgs---~Dg~I~IWdl~s~~~ 777 (927)
++.. ............+.+..+...+++..+. +.+ .-++|+.||+.+++.
T Consensus 354 ~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 8877 3333322222334455555555554432 222 245688888887653
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.61 E-value=1.2 Score=51.79 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=51.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccC
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~ 698 (927)
+....+....++.+.+.+-...+. ....+.+..+++||+|++++.-..+|.+.+....-.+....+.. .
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~--------~ 257 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT--------D 257 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec--------C
Confidence 444555555555666444222111 33356899999999999999999999999987665555444332 2
Q ss_pred CCCCeEEEEEcCC
Q 002407 699 HQRKITGFQFAPG 711 (927)
Q Consensus 699 h~~~Vtsl~fspd 711 (927)
.......|+|.-+
T Consensus 258 ~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 258 SKSPPKQMAWCGN 270 (410)
T ss_pred cCCCCcEEEEECC
Confidence 2334456666654
No 356
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.61 E-value=0.49 Score=50.84 Aligned_cols=192 Identities=9% Similarity=0.063 Sum_probs=119.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCC--cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~Dg--tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
..-...+.|..+|.++-+.|.-| .|+.+|+.+++......... .+++
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------------~~Fg-------------- 92 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------------RYFG-------------- 92 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------------T--E--------------
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------------cccc--------------
Confidence 34456788888898888888777 79999998886544321000 0000
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI 613 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v 613 (927)
+ -+.-+.+.+..|.| .++...+||..+.+.+..+.....=+.+
T Consensus 93 ------------------------E---Git~~~d~l~qLTW----------k~~~~f~yd~~tl~~~~~~~y~~EGWGL 135 (264)
T PF05096_consen 93 ------------------------E---GITILGDKLYQLTW----------KEGTGFVYDPNTLKKIGTFPYPGEGWGL 135 (264)
T ss_dssp ------------------------E---EEEEETTEEEEEES----------SSSEEEEEETTTTEEEEEEE-SSS--EE
T ss_pred ------------------------e---eEEEECCEEEEEEe----------cCCeEEEEccccceEEEEEecCCcceEE
Confidence 0 01113445566666 4678899999999999999977788888
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+. ++..|+.......|+++|..+.+.+...... ..++.+.|- +|...|=.-....|...|..+|+....+
T Consensus 136 t~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 136 TS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred Ec---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 84 6677777777778999998887655433221 356667775 6666666666778999999999988766
Q ss_pred cccccccc------ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 688 PINLQNKK------KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 688 ~i~~~~~~------~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.+..-... ......-.++|++.|....++++|
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 43221111 112245689999999888666555
No 357
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.46 E-value=0.99 Score=53.75 Aligned_cols=157 Identities=11% Similarity=0.107 Sum_probs=93.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCc------eE-EEEEccCCCCEEEEEE---------CCCcEEEEeCCCCcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDY------VT-CIQFNPVDDRYFISGS---------LDAKVRIWSIPERQV 642 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~------V~-~v~fsp~dg~~L~sgs---------~Dg~I~IWDl~t~~~ 642 (927)
+.++.++.++.|+-+|..+++.+..+..... +. ...+. +.+++.++ .++.|.-+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 6788888999999999999999888763332 11 12222 24455554 367899999999987
Q ss_pred EEeccCC-C--------------------cE-EEEEECCCCCEEEEEECCC------------------eEEEEECCCCe
Q 002407 643 VDWNDLH-E--------------------MV-TAACYTPDGQGALVGSYKG------------------SCHLYNTSENK 682 (927)
Q Consensus 643 v~~~~~~-~--------------------~V-~sla~spdg~~l~tgs~Dg------------------~I~IwDl~~~~ 682 (927)
+-..... . .+ ...++.+.+..+++++.++ .|.-+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 6433221 0 00 1345555667788887665 79999999999
Q ss_pred eeeeccccccccc-ccCCCCC-eEEEE-EcCCCCcEEEEEECCCcEEEEECCcceEEEE
Q 002407 683 LQQKSPINLQNKK-KRSHQRK-ITGFQ-FAPGSSSEVLVTSADSRIRVVDGIDLVHKFK 738 (927)
Q Consensus 683 ~~~~~~i~~~~~~-~~~h~~~-Vtsl~-fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~ 738 (927)
..-.++......- ......+ +..+. ..-.....+++++.+|.+..+|..+....++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 8877643211000 0011111 11111 1111112577788899999999766555444
No 358
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.44 E-value=1.6 Score=46.24 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=85.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE-EEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT-AACY 657 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~-sla~ 657 (927)
.+++.|+..+.+.--|..+|..+........|.+-+.- -+++++.|+..|.+++.+..++.....+...+.|. ....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 56888889999999999999888766666666665554 46789999999999999999997766555444433 3445
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
.+++..+..|+.|++.+..|.++...+.+.
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEec
Confidence 788999999999999999999998887764
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.012 Score=68.30 Aligned_cols=91 Identities=11% Similarity=0.222 Sum_probs=78.4
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE-EEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~-~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
...|.-+.|+|. ..+|++..+|.|.+..+. .+.+.++. +...++ +++|.| ||++|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 345788999998 899999999999999998 77788888 777777 999999 9999999999999999999998877
Q ss_pred Ee--ccCCCcEEEEEECC
Q 002407 644 DW--NDLHEMVTAACYTP 659 (927)
Q Consensus 644 ~~--~~~~~~V~sla~sp 659 (927)
.- ......|.++.|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 65 55556788887763
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.37 E-value=0.18 Score=46.83 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=72.0
Q ss_pred EEEEEecC---C--cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 570 VLDLSWSK---S--QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 570 V~~l~~sp---d--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
|++|++.. + +.|++|+.|..||+|+-. +.+..+.-+..|++++-.. ...|+.+..+|+|-+|+-... +-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcC--CCEEEEEecCCEEEEEeCcce--ee
Confidence 55666543 3 679999999999999854 6778888888999998876 477999999999999975322 22
Q ss_pred eccCCCcEEEEEECC-C--C-CEEEEEECCCeEEE
Q 002407 645 WNDLHEMVTAACYTP-D--G-QGALVGSYKGSCHL 675 (927)
Q Consensus 645 ~~~~~~~V~sla~sp-d--g-~~l~tgs~Dg~I~I 675 (927)
..+.+..++++++.. + | .-|++|-.+|.|-+
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 233344466666544 3 2 36888888887753
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.016 Score=67.43 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=77.0
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEE-EEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVT-AACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~-sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
....|.-+.|+| .-.+||.+..+|.|.+..+.-.++....-+...++ +++|.|||+.|++|-.||+|++.|+.++..+
T Consensus 19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcC-ccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345678899999 88899999999999999888555444443555666 9999999999999999999999999998877
Q ss_pred eecccccccccccCCCCCeEEEEEcC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.... ......|.++.|.+
T Consensus 98 ~~~~--------~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFL--------FSVETDISKGIWDR 115 (665)
T ss_pred eccc--------cccccchheeeccc
Confidence 7643 24556788888875
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.032 Score=63.71 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=97.6
Q ss_pred EEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCE-------EEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 623 FISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG-------ALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 623 L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~-------l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
|.++.....|+-.|+..|+++..-..+..|+-+.+.|+.+. -++|-.+..|.-||++-.... .+.....+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeeecc
Confidence 44555556788899999999986666767888999997643 355777888999998843321 01111111
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.-.......|++-..+| .|++|+.+|.|++||......+-.......+|..+..+.+|++|+..+ +.++.+-++.
T Consensus 426 qy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 11333456666666665 799999999999999432222223333467789999999999988776 5566666653
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.30 E-value=0.11 Score=64.08 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=89.6
Q ss_pred eCCCcEEEEeCCCCcEEEEEecCCceEEEEEcc------CCCCEEEEEECCCcEEEEeCCCC--cEEEe----ccCCCcE
Q 002407 585 SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNP------VDDRYFISGSLDAKVRIWSIPER--QVVDW----NDLHEMV 652 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp------~dg~~L~sgs~Dg~I~IWDl~t~--~~v~~----~~~~~~V 652 (927)
.....|+-.|+..|+.+..+.....+.-..|.| .+..-.+.|-.+..|..||.+-. +++.. .......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 346789999999999999888333332333434 12344567778889999998763 34421 2233567
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|++-+.+| +||+|+.+|.|++||-- ++...+ . +.+...+|.+|..+.||. +|++ ..+..|.|++
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT-~-------lp~lG~pI~~iDvt~DGk-wila-Tc~tyLlLi~ 645 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKT-A-------LPGLGDPIIGIDVTADGK-WILA-TCKTYLLLID 645 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhh-c-------CCCCCCCeeEEEecCCCc-EEEE-eecceEEEEE
Confidence 888888777 79999999999999943 322111 1 136678999999999997 3433 3455666666
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.99 Score=50.17 Aligned_cols=118 Identities=11% Similarity=0.212 Sum_probs=71.6
Q ss_pred EEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCC--C----c--EEEeccCCCcEEEEEECC
Q 002407 590 VRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPE--R----Q--VVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t--~----~--~v~~~~~~~~V~sla~sp 659 (927)
|+..+. .+..++.+. +-..-+.|+|+| +++.|+.+.. .+.|.-|++.. + + .+.....+...-.++...
T Consensus 145 lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred EEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 333343 344444444 355567899999 8877776655 46788887752 1 1 112222334555677788
Q ss_pred CCCEEEEEECCC-eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC-CCCcEEEEE
Q 002407 660 DGQGALVGSYKG-SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVT 719 (927)
Q Consensus 660 dg~~l~tgs~Dg-~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~~~Llsg 719 (927)
+|.+.+++...| .|.+|+.. ++++..+.+ ....+++++|-- +.+.+++++
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---------P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---------PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEEC---------CCCCCccceEeCCCcCEEEEEe
Confidence 888776655554 89999998 777776543 225677777764 334333333
No 365
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.22 Score=57.90 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=98.2
Q ss_pred cCCceEEEEEccCCCCEEEEEE---CC-CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCe--EEEEEC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGS---LD-AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGS--CHLYNT 678 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs---~D-g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~--I~IwDl 678 (927)
-...+..-+|+| ++..++... .. ..+.++++.+++..........-....|+|||+.|+... .||. |+++|+
T Consensus 191 ~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344566677888 665544332 12 358999999987776666666677789999999877654 4554 777788
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE--ECCc-ceEEEEeecCCcceEEEEEecCC
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV--DGID-LVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw--D~~~-~~~~~~~~~~~~~v~sv~fspdg 755 (927)
..+.... + ....+.-+.=.|+|+|+.++++....|.-.|| +... ....+....... ..-.|+|||
T Consensus 270 ~~~~~~~-L---------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG 337 (425)
T COG0823 270 DGKNLPR-L---------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDG 337 (425)
T ss_pred CCCccee-c---------ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCC
Confidence 7766332 1 11222223557999999777777777775555 4221 122222221111 166899999
Q ss_pred CEEEEEECC-Cc--EEEEECCCCC
Q 002407 756 RYVVSASED-SY--VYVWKYEAES 776 (927)
Q Consensus 756 ~~Lasgs~D-g~--I~IWdl~s~~ 776 (927)
++|+..+.. |. |.+.++.++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 999887743 44 6666665544
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.09 E-value=0.013 Score=41.03 Aligned_cols=37 Identities=30% Similarity=0.549 Sum_probs=32.5
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEe
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWH 594 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWD 594 (927)
+++..+..|...|.++.|.+. ..+++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677789999999999987 8899999999999996
No 367
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.79 Score=49.55 Aligned_cols=165 Identities=10% Similarity=0.197 Sum_probs=111.4
Q ss_pred cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h--~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
|-...|.+|.|+|+ ..|++......-.||=...|+.+.++.. -...-.|.+.. ++.+.++--.+..+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCc
Confidence 44455999999998 7788888888888887788999998872 23345667776 77777777778888888765542
Q ss_pred EE--------E--eccC-CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc-ccccccCCCCCeEEEEEc
Q 002407 642 VV--------D--WNDL-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-QNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 642 ~v--------~--~~~~-~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~-~~~~~~~h~~~Vtsl~fs 709 (927)
.+ . ...+ +.....++|.|....|+++-...-+.||.+............. +.....-.-..|.++.|.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 11 1 1112 4567889999999999999888888888776433111111100 000001123457888999
Q ss_pred CCCCcEEEEEECCCcEEEEEC
Q 002407 710 PGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+....+++.+.+++.+.-.|.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred CCCCcEEEEecCCceEEEEec
Confidence 877767777778888887774
No 368
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.85 E-value=5 Score=46.50 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=106.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-------------------
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE------------------- 639 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t------------------- 639 (927)
.+|..=+.||.+.+++-+.-.....+..---...+.|.+ ..+.|++++.+..|.-|....
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 568888999999999987665555554333334567787 777888888888888886521
Q ss_pred -CcEE--E-eccCCCcEEEEE---ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE-----
Q 002407 640 -RQVV--D-WNDLHEMVTAAC---YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ----- 707 (927)
Q Consensus 640 -~~~v--~-~~~~~~~V~sla---~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~----- 707 (927)
++.+ . .+...+.+..+. ++.....+++-+ ..++.+.+.. |.+.....+ .....+++
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~-G~l~~~krL----------d~~p~~~~~Y~~~ 292 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN-GSLRFQKRL----------DYNPSCFCPYRVP 292 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC-CeEEEEEec----------CCceeeEEEEEee
Confidence 1111 0 112223333333 322222333332 4556666653 444443322 11122222
Q ss_pred --EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 708 --FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 708 --fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
..+.....+++++.++++.||...+++-..+.......+.-..|..-...|++-+.+|.+.+-=+-+...
T Consensus 293 ~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 293 WYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred cccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 1222233599999999999998666555444432222222333334455888999999999998887653
No 369
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=4 Score=46.96 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=127.2
Q ss_pred EEEEEecCCc-E-EEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEe
Q 002407 570 VLDLSWSKSQ-H-LLSSSMDKTVRLWHLSSKTCLKIFSHS-DYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 570 V~~l~~spd~-~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~-~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
...+...+++ . .++-.....+...+...........-. ..-..+++++ .+. .+++...+..|.+.|..+.++...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~-~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNP-AGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCC-CCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 3445555552 2 222222224555554422222211212 4456778888 555 555665678999999888888776
Q ss_pred ccCCCcEEEEEECCCCCEEEEEEC---CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.........++++|+++.+.++.. ++.+.+.|..+++....... +. .+ ..+++.|++...+++-..+
T Consensus 112 ~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v--------G~-~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 112 IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV--------GN-TP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec--------CC-Cc-ceEEECCCCCeEEEEecCC
Confidence 666668889999999988888766 68899999999888777321 11 22 8899999998666666789
Q ss_pred CcEEEEECCcceEEE-E---eecCCcceEEEEEecCCCEEEEEECC---CcEEEEECCCCCC
Q 002407 723 SRIRVVDGIDLVHKF-K---GFRNTNSQISASLTANGRYVVSASED---SYVYVWKYEAESR 777 (927)
Q Consensus 723 g~I~VwD~~~~~~~~-~---~~~~~~~v~sv~fspdg~~Lasgs~D---g~I~IWdl~s~~~ 777 (927)
+.|.++|........ . ..........+.++++|.++...... +.+.+.|..+...
T Consensus 182 ~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 182 NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 999999954332221 1 11122333568899999977666544 4788888877543
No 370
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.66 E-value=4.3 Score=46.09 Aligned_cols=215 Identities=11% Similarity=0.095 Sum_probs=106.5
Q ss_pred EeecCCCceEEEccCCCC-EEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccC-CCCEEEEEE
Q 002407 552 VFALSDKPICSFQGHLDD-VLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPV-DDRYFISGS 627 (927)
Q Consensus 552 v~~~s~k~i~~l~gH~~~-V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs 627 (927)
+.++....+..|..+.+. .....++++ ..|+-......|+-.|+.+.+...++. ....+-...|... ++..++-.-
T Consensus 64 ~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e 143 (386)
T PF14583_consen 64 LLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIE 143 (386)
T ss_dssp EEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEE
T ss_pred EEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEE
Confidence 345555666666654422 223455565 666666666789999999998777776 4555545666432 344433221
Q ss_pred C----------------------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCe-----EEEEECCC
Q 002407 628 L----------------------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS-----CHLYNTSE 680 (927)
Q Consensus 628 ~----------------------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~-----I~IwDl~~ 680 (927)
. ...|..-|+.+++....+.....+..+.|+|....+++=+..|- -+||-+++
T Consensus 144 ~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 144 ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence 1 13455668888888888888889999999997766666555431 35564443
Q ss_pred --CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCcceEEEEeecCCcceEEEEEecC
Q 002407 681 --NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA----DSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 681 --~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd 754 (927)
.......+ ......+..=-|.|+|..+...+.. +..|.-+|..+......... .....+..++|
T Consensus 224 dg~~~~~v~~--------~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~D 293 (386)
T PF14583_consen 224 DGSNVKKVHR--------RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFMSSPD 293 (386)
T ss_dssp TS---EESS-----------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE---SEEEEEE-TT
T ss_pred CCCcceeeec--------CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC--CceeeeEEcCC
Confidence 32222110 1222334444588998865554432 23355566554433322211 13445666789
Q ss_pred CCEEEEEECCC----------------cEEEEECCCCC
Q 002407 755 GRYVVSASEDS----------------YVYVWKYEAES 776 (927)
Q Consensus 755 g~~Lasgs~Dg----------------~I~IWdl~s~~ 776 (927)
|++++-=+.|. -|++++++.+.
T Consensus 294 g~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 294 GKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp SSEEEEEE-------------------EEEEEETTTTE
T ss_pred CCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 99887544432 46677776543
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.35 E-value=0.81 Score=55.52 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=85.2
Q ss_pred CCEEEEEecCC-cEEEEEe------CCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC---------
Q 002407 568 DDVLDLSWSKS-QHLLSSS------MDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD--------- 629 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs------~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--------- 629 (927)
..+...+++|+ +.++..- .|. .|.+++... .. ..+......+.-.|+| ++..|.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEGHSLTRPSWSL-DADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecCCCCCCceECC-CCCceEEEecCcceEEEecc
Confidence 46778889998 4444333 243 455556532 22 3333333488899999 87777666432
Q ss_pred ---CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEE---EECCCCeeeeecccccccccccCCCCCe
Q 002407 630 ---AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL---YNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 630 ---g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I---wDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+.+.+.++..+.... .....|..+.|+|||+.++... ++.|++ -....+.........+ .......+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l----~~~l~~~~ 499 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV----GPGLGDTA 499 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe----ecccCCcc
Confidence 233333444443322 3456799999999999988866 577777 4444454211111000 01233346
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..+.|.+++. |+++..++...+|.
T Consensus 500 ~~l~W~~~~~--L~V~~~~~~~~v~~ 523 (591)
T PRK13616 500 VSLDWRTGDS--LVVGRSDPEHPVWY 523 (591)
T ss_pred ccceEecCCE--EEEEecCCCCceEE
Confidence 7899999875 44555555444554
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.34 E-value=0.53 Score=55.03 Aligned_cols=177 Identities=10% Similarity=0.034 Sum_probs=93.0
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
...-....|.++|++.+++.+.||...|+.....+... .+.-..++|.+ .++ +++-....+|.|+.--+.+...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccce
Confidence 34445778999999777777889998898854443322 24455678887 454 6666668889996322222212
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.+..+..+..+-. |..|++.+.+ .|.+||+.+++.+..+.+ ..|..+.|++++. +++..+ +..
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----------~~vk~V~Ws~~g~-~val~t-~~~ 166 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----------SAVKYVIWSDDGE-LVALVT-KDS 166 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------------E-EEEEE-TTSS-EEEEE--S-S
T ss_pred EEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----------CCCcEEEEECCCC-EEEEEe-CCe
Confidence 2233334444443 7777777654 899999999998887542 2388999999987 555555 446
Q ss_pred EEEEECCc-------------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 725 IRVVDGID-------------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 725 I~VwD~~~-------------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
+.|++... ....... -...|.+.+|..+ -+|.|. .. +|+-
T Consensus 167 i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY 219 (443)
T PF04053_consen 167 IYILKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY 219 (443)
T ss_dssp EEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE
T ss_pred EEEEEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE
Confidence 77766221 2222221 1455777788766 333333 33 5555
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.33 Score=51.91 Aligned_cols=225 Identities=19% Similarity=0.204 Sum_probs=122.3
Q ss_pred EEEeccCcccccceeee---eEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEecCcC-cccceeecccccCcc
Q 002407 433 VRQYGKSCKDLTALYKC---QEIQAHNGSIWSIKFSLDGRYLASAGE-----DCVIHVWQVVES-ERKGELLEKQEDGHL 503 (927)
Q Consensus 433 V~i~~~~s~~l~~l~~~---q~L~gH~~~I~~vafSpdG~~LaSgs~-----DgtVrVWdv~~~-~~~~~l~~~~~~~~~ 503 (927)
-.+++....+...+... +.+.||. .|||||.+|...-. -|.|-|||...+ +.+.++ ..+-
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-----~t~G 161 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-----STHG 161 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-----ccCC
Confidence 34555554444333322 2355664 49999999987643 378999998754 233333 2222
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEee-cCCCceEE--Ec--cCCCCEEEEEecCC
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA-LSDKPICS--FQ--GHLDDVLDLSWSKS 578 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~-~s~k~i~~--l~--gH~~~V~~l~~spd 578 (927)
-.-..+.+.+||..++..... |+.. ....+..++++.+.....+.+ .++..+.+ +. -+.-.|..++..++
T Consensus 162 iGpHev~lm~DGrtlvvanGG--Ieth---pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d 236 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANGG--IETH---PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD 236 (366)
T ss_pred cCcceeEEecCCcEEEEeCCc--eecc---cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC
Confidence 333466788898888776432 2111 011112222222222222222 33333322 22 34556778888777
Q ss_pred cEEEEEeC------CCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEE
Q 002407 579 QHLLSSSM------DKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVV 643 (927)
Q Consensus 579 ~~L~Sgs~------DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v 643 (927)
+.++.++. |---.+=-...++.++.+. ...+|-+|+.+- +..+++..+ ..+...+||..++.++
T Consensus 237 gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 237 GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 77666653 1111122222344444332 456788899987 444444444 4455789999999988
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN 677 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD 677 (927)
......+. .-.-+...-|++.+..|.|.+|.
T Consensus 316 ~~a~l~da---aGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 316 SEAALPDA---AGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred eccccccc---ccceeccCceEEecCCceEEecc
Confidence 76554432 12223455677888899998884
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.03 E-value=5.7 Score=47.78 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
|.|.-+|+.+++++-..........-.+.-.+..+++++.+|.++.+|.++++.+....+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457778888887765443332211111122455777788899999999999998877643
No 375
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.01 E-value=3.7 Score=47.10 Aligned_cols=143 Identities=14% Similarity=0.170 Sum_probs=73.7
Q ss_pred CcEEEEeCCCCcEEEEEec----CCceEEEEEccCCCCEEEEEEC--------------------CCcEEEEeCCCCcEE
Q 002407 588 KTVRLWHLSSKTCLKIFSH----SDYVTCIQFNPVDDRYFISGSL--------------------DAKVRIWSIPERQVV 643 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h----~~~V~~v~fsp~dg~~L~sgs~--------------------Dg~I~IWDl~t~~~v 643 (927)
|-+.+.|-++.+....... ...-..+-|.| ..+.++|... -.+|.+||+.+.+++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 3477777777666665542 33456788888 7788888643 356999999999999
Q ss_pred EeccCC---CcEEEEEECC--CCCEEEEE-ECCCeEEEE-ECCCCeeeeecccccccccc------------cCCCCCeE
Q 002407 644 DWNDLH---EMVTAACYTP--DGQGALVG-SYKGSCHLY-NTSENKLQQKSPINLQNKKK------------RSHQRKIT 704 (927)
Q Consensus 644 ~~~~~~---~~V~sla~sp--dg~~l~tg-s~Dg~I~Iw-Dl~~~~~~~~~~i~~~~~~~------------~~h~~~Vt 704 (927)
+.+... ..+..+-|.. +..+-++| -...+|..| ....+....+..+.+..++. .....-|+
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 887776 3455666654 44443333 334455444 44566655444444333221 11135589
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.|.++.|++.+.+++-.+|.|+.||..
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecC
Confidence 999999998777777789999999954
No 376
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.99 E-value=3.6 Score=45.75 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=112.0
Q ss_pred EEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE-EeccCC
Q 002407 573 LSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV-DWNDLH 649 (927)
Q Consensus 573 l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~ 649 (927)
..|.++ + .+.+--..+.|.-|+..+++. ..+.+...+.++..-. .+..|+++. ..+.+++..++..+ .+....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 356666 4 345555677888898876643 4455555556655544 444555543 33667777665552 222211
Q ss_pred -----CcEEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 650 -----EMVTAACYTPDGQGALVGSY-----------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 650 -----~~V~sla~spdg~~l~tgs~-----------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
...+.+...|+|.+.+.... -|.|+.+|. .+...... ..+-..-++|+|+|+++
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~---------~~~~~~~NGla~SpDg~ 175 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL---------DDDLTIPNGLAFSPDGK 175 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee---------cCcEEecCceEECCCCC
Confidence 35677888999876655433 134555554 33333221 23345567899999998
Q ss_pred cEEEEEECCCcEEEEECCc-------ceEEEEeecCCcceEEEEEecCCCEEEEEECCC-cEEEEECCCCCCc
Q 002407 714 SEVLVTSADSRIRVVDGID-------LVHKFKGFRNTNSQISASLTANGRYVVSASEDS-YVYVWKYEAESRP 778 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~~-------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg-~I~IWdl~s~~~~ 778 (927)
.++++=+..+.|..|+... ....+.........-.++...+|.+.+++-.+| .|.+|+.+ +++.
T Consensus 176 tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 176 TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 6666667778898887431 111111111234445677788888876555554 89999887 4443
No 377
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.97 E-value=6.7 Score=42.51 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=84.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-------------
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD------------- 644 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~------------- 644 (927)
++.|+.|+.+| |.++++..........+...|..+...| +-+.|++-+ |+.|.++++..-....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 36799999988 9999994333333344444599999998 666666654 5999999987644333
Q ss_pred --eccCCCcEEEEE--ECCCCCEEEEEECCCeEEEEECCCC-----eeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 645 --WNDLHEMVTAAC--YTPDGQGALVGSYKGSCHLYNTSEN-----KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 645 --~~~~~~~V~sla--~spdg~~l~tgs~Dg~I~IwDl~~~-----~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.......+...+ -...+...++......|.+|..... +...++ .....+..++|.++ .
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~----------~lp~~~~~i~~~~~---~ 150 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI----------SLPDPPSSIAFLGN---K 150 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE----------EcCCCcEEEEEeCC---E
Confidence 111223444444 1223334444444558888887663 222222 34477889999853 5
Q ss_pred EEEEECCCcEEEEECC
Q 002407 716 VLVTSADSRIRVVDGI 731 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~ 731 (927)
++++..++ ..+.|..
T Consensus 151 i~v~~~~~-f~~idl~ 165 (275)
T PF00780_consen 151 ICVGTSKG-FYLIDLN 165 (275)
T ss_pred EEEEeCCc-eEEEecC
Confidence 66666444 6677754
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.96 E-value=0.7 Score=56.08 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=87.3
Q ss_pred CceEEEEEccCCCCEEEEEE------CCC--cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCe-EEEEEC
Q 002407 608 DYVTCIQFNPVDDRYFISGS------LDA--KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGS-CHLYNT 678 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs------~Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~-I~IwDl 678 (927)
..+...+++| +++.++..- .|. .|.+++.. +....+.... ..+.-.|+|+|..|++...... +++.+-
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC-CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999 888776655 243 45555643 3333333333 4888999999998888764322 333332
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE---EECCcceEEE----Ee-ecCCcceEEEE
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV---VDGIDLVHKF----KG-FRNTNSQISAS 750 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V---wD~~~~~~~~----~~-~~~~~~v~sv~ 750 (927)
.....+....+....... .....|..+.|+|||..+.++. +++|+| -........+ .. ......+..+.
T Consensus 427 ~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 221111111111100001 2345799999999998544444 477777 3311111111 11 11222357789
Q ss_pred EecCCCEEEEEECCCcEEEEECCC
Q 002407 751 LTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 751 fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
|..++.++ .+..++...+|.+.-
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v~v 526 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYVNL 526 (591)
T ss_pred EecCCEEE-EEecCCCCceEEEec
Confidence 99999865 555555555665543
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.77 E-value=8.4 Score=42.72 Aligned_cols=155 Identities=13% Similarity=0.181 Sum_probs=78.0
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCCee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT-SENKL 683 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl-~~~~~ 683 (927)
....+..+..++ ++.+++++..-..+.-||--...- .........|..|.|.|++...+++ ..|.|++=+. .....
T Consensus 143 ~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788888888 998888876655566777543322 2233345789999999998766654 8888888772 22222
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE-ECCc-ceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV-DGID-LVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw-D~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
...... ........+..++|.+++. +.+++..|.+.+= |..+ ....-....-......+.|.++.+-+|.|
T Consensus 221 w~~~~~-----~~~~~~~~~ld~a~~~~~~--~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 221 WSEPII-----PIKTNGYGILDLAYRPPNE--IWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E---B------TTSS--S-EEEEEESSSS---EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccC-----CcccCceeeEEEEecCCCC--EEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence 211111 1123445589999998764 5556666655553 3322 22222222234457778887665555554
Q ss_pred ECCCcEEEE
Q 002407 762 SEDSYVYVW 770 (927)
Q Consensus 762 s~Dg~I~IW 770 (927)
.+|.|.-|
T Consensus 294 -~~G~ll~~ 301 (302)
T PF14870_consen 294 -QDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred -CCcEEEEe
Confidence 68877655
No 380
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.66 E-value=5.3 Score=44.63 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=113.9
Q ss_pred EEecCC-cEEEEE--eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC-CCcEEE----
Q 002407 573 LSWSKS-QHLLSS--SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVD---- 644 (927)
Q Consensus 573 l~~spd-~~L~Sg--s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~-t~~~v~---- 644 (927)
++++.+ .+++.. +--..|-|-|+..++.+..+...+...- -|...+-|.+-|.||.+....+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEECCCCCEeEeecc
Confidence 345555 333332 3345678888888888877765543322 23234568889999999998887 455432
Q ss_pred eccC-CCc-EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 645 WNDL-HEM-VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 645 ~~~~-~~~-V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.+.. .+. +..-++...+..++--+.+|.|+--|+..........+.+.... ..-..+.-.-+++++....+++..
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1211 122 23444555566666678899999999987764443333221100 001112233466776555333332
Q ss_pred E-------CCC--cEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCcccccc
Q 002407 720 S-------ADS--RIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSRSKS 783 (927)
Q Consensus 720 s-------~Dg--~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~~~~ 783 (927)
- .|+ .|-+||..+.....+... ...+.++.++.+.+ +|++.+ .++.|.|||..+++.......
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 1 122 366677655544444332 23466888888776 665554 578999999999876655543
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=4.4 Score=43.97 Aligned_cols=166 Identities=13% Similarity=0.160 Sum_probs=106.2
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--CcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
....|.++.|+| +.+.|++......-.||=...|+++..+... .....+.|.-+|+++++--.++.+.++.+.....
T Consensus 84 ~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 84 ETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 344599999999 8888888887777778877788888766554 3566788888888888888888888887765532
Q ss_pred eeec---ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee-----cC-----CcceEEEE
Q 002407 684 QQKS---PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF-----RN-----TNSQISAS 750 (927)
Q Consensus 684 ~~~~---~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~-----~~-----~~~v~sv~ 750 (927)
.... .+.+.. ........-+++|.|... .|+++-+-.-+.||........+..+ .. -..+.++.
T Consensus 163 ~~~~~~~~i~L~~--~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGT--TNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccc--cCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 2211 122211 112266788999999876 67777777777776532111111111 00 12244567
Q ss_pred Eec-CCCEEEEEECCCcEEEEECCCC
Q 002407 751 LTA-NGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 751 fsp-dg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++ .+.+|+-+.+++.+.-.+....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 775 4556666667777777776654
No 382
>PHA02713 hypothetical protein; Provisional
Probab=94.57 E-value=1.5 Score=53.08 Aligned_cols=186 Identities=9% Similarity=0.060 Sum_probs=95.9
Q ss_pred CCcEEEEEeCC------CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEE
Q 002407 577 KSQHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVV 643 (927)
Q Consensus 577 pd~~L~Sgs~D------gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v 643 (927)
.+..++.|+.+ ..+..||..+......-. ....-.+++.. ++++.+.|+.++ .+..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 34556666643 347788888775432222 11111122222 677888888764 3788998876544
Q ss_pred EeccCCC---cEEEEEECCCCCEEEEEECCC-----------------------eEEEEECCCCeeeeeccccccccccc
Q 002407 644 DWNDLHE---MVTAACYTPDGQGALVGSYKG-----------------------SCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 644 ~~~~~~~---~V~sla~spdg~~l~tgs~Dg-----------------------~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
.....+. ....+ .-+|+..++|+.++ .+..||..+.+......+..
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~------ 452 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT------ 452 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc------
Confidence 3322222 11122 23677888887642 47789988876554322110
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCc-ceEE-EEeecCCcceEEEEEecCCCEEEEEECCC--cE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSAD------SRIRVVDGID-LVHK-FKGFRNTNSQISASLTANGRYVVSASEDS--YV 767 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~D------g~I~VwD~~~-~~~~-~~~~~~~~~v~sv~fspdg~~Lasgs~Dg--~I 767 (927)
. ... .+++.. ++. +.++|+.+ ..+..||..+ ..-. ............++ .-+|++.++|+.++ .+
T Consensus 453 ~-r~~-~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 453 G-TIR-PGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQ 527 (557)
T ss_pred c-ccc-CcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeeh
Confidence 0 011 122222 233 66666654 2466788554 2211 11111111111222 23778888999888 67
Q ss_pred EEEECCCCCC
Q 002407 768 YVWKYEAESR 777 (927)
Q Consensus 768 ~IWdl~s~~~ 777 (927)
..||..+.+-
T Consensus 528 e~yd~~~~~W 537 (557)
T PHA02713 528 DTFNVYTYEW 537 (557)
T ss_pred hhcCcccccc
Confidence 7777776554
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.52 E-value=0.062 Score=55.69 Aligned_cols=141 Identities=18% Similarity=0.122 Sum_probs=73.1
Q ss_pred EEEEECCCcEEEEeCCCCcEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC
Q 002407 623 FISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 623 L~sgs~Dg~I~IWDl~t~~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
|..-+.|+.|+-++++..+.... ..+... ...-.-+..+++|+.+|.|++|............ ....
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~--------~s~~ 101 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV--------CSGE 101 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhh--------hccc
Confidence 44456677787777765433211 111111 1111235679999999999999887321111110 1122
Q ss_pred CCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEE--ECCCcEEEEECCC
Q 002407 701 RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSA--SEDSYVYVWKYEA 774 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasg--s~Dg~I~IWdl~s 774 (927)
..|-++.-.-+...+..+++.|+.|+.|+..... .-+.++....++..+.....+++|+.+ |.|..++.|++..
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2233322222222388899999999999953322 122222222344444445555566665 6666666666654
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.50 E-value=18 Score=45.26 Aligned_cols=196 Identities=12% Similarity=0.145 Sum_probs=107.0
Q ss_pred CCCEEEEE--ecCC--cEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 567 LDDVLDLS--WSKS--QHLLSSSMDKTVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 567 ~~~V~~l~--~spd--~~L~Sgs~DgtV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
-..++.+. +.++ .+|+.+--+ .-++..+... +.............+..+-..++.|+=.. ...|++++-. +.
T Consensus 404 ikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-s~~iRl~ss~-~~ 480 (1096)
T KOG1897|consen 404 IKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-SNSIRLVSSA-GL 480 (1096)
T ss_pred ccceeEeeccccccCCcEEEEEecc-ceEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-cccEEEEcch-hh
Confidence 34455665 4333 444444333 3344444432 11111112333344444444455544333 3458888754 34
Q ss_pred EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC--CCc---EE
Q 002407 642 VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG--SSS---EV 716 (927)
Q Consensus 642 ~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd--g~~---~L 716 (927)
.-.|.... .++....+.+...+++++.++.+...++....+..... +.....|.|+.++|- ++. ++
T Consensus 481 ~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~--------~~~e~evaCLDisp~~d~~~~s~~~ 551 (1096)
T KOG1897|consen 481 RSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH--------KEFEYEVACLDISPLGDAPNKSRLL 551 (1096)
T ss_pred hhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee--------heecceeEEEecccCCCCCCcceEE
Confidence 44444443 34444445555678888878888888887766443322 345577999999875 343 78
Q ss_pred EEEECCCcEEEEEC-Ccce-EE---EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 717 LVTSADSRIRVVDG-IDLV-HK---FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 717 lsgs~Dg~I~VwD~-~~~~-~~---~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
++|..+..+.+.-. .+.. .. +.+..-...|.-.+|-.|..+|.++..||.+.-|-+..
T Consensus 552 aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 552 AVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 88887777666431 1111 11 11222233455556667789999999999987665543
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=2.1 Score=45.99 Aligned_cols=201 Identities=11% Similarity=0.078 Sum_probs=116.2
Q ss_pred EEEEecCC--cEEEEEeCCCc-EEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCC
Q 002407 571 LDLSWSKS--QHLLSSSMDKT-VRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPE 639 (927)
Q Consensus 571 ~~l~~spd--~~L~Sgs~Dgt-V~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t 639 (927)
..|+++|. .-++.+-.-|+ ..++|....+...++. ....--.=.|+| ++.+|+..-.| |.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence 35777776 33555666565 5688998887766654 122233446899 99998876544 6799999885
Q ss_pred Cc--EEEeccCCCcEEEEEECCCCCEEEEEEC------------------CCeEEEEECCCCeeeeecccccccccccCC
Q 002407 640 RQ--VVDWNDLHEMVTAACYTPDGQGALVGSY------------------KGSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (927)
Q Consensus 640 ~~--~v~~~~~~~~V~sla~spdg~~l~tgs~------------------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h 699 (927)
+- +-.+..+.-....+.+.+||+.++++.. .-.+.+.|..++.++.+..+.. ..+
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-----~l~ 224 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-----SLR 224 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-----hhh
Confidence 42 2234444456778999999999888643 1245556666666665544321 134
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCc-------EEEEECCcceEEEEee-----cCCcceEEEEEecCCCEEEEEECCC-c
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADSR-------IRVVDGIDLVHKFKGF-----RNTNSQISASLTANGRYVVSASEDS-Y 766 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg~-------I~VwD~~~~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg-~ 766 (927)
...|..+...++|. +++.+-..|. |-++-..+.+..+... .-...|-+++.+.+..+++..+-.| .
T Consensus 225 ~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 225 QLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred hcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 45577777777764 2222211111 1111111111111111 0123456777776666666666544 5
Q ss_pred EEEEECCCCCCc
Q 002407 767 VYVWKYEAESRP 778 (927)
Q Consensus 767 I~IWdl~s~~~~ 778 (927)
..|||..++...
T Consensus 304 ~vi~da~tG~vv 315 (366)
T COG3490 304 AVIWDAATGAVV 315 (366)
T ss_pred EEEEEcCCCcEE
Confidence 779999997643
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.29 E-value=4.7 Score=46.27 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=104.3
Q ss_pred cEEEEEe-CCCcEEEEeCCC----CcEEEEEe----cC----CceEEEEEccCCCCEEEEEEC--C----CcEEEEeCCC
Q 002407 579 QHLLSSS-MDKTVRLWHLSS----KTCLKIFS----HS----DYVTCIQFNPVDDRYFISGSL--D----AKVRIWSIPE 639 (927)
Q Consensus 579 ~~L~Sgs-~DgtV~lWDl~t----~~~~~~~~----h~----~~V~~v~fsp~dg~~L~sgs~--D----g~I~IWDl~t 639 (927)
.+|+..+ ..+.|+|.|+.+ .+..+++. +. .....+..-| ++++++++-. + |.+.++|-.+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 5566666 678899999884 34555553 11 1223344456 7888888633 2 4588888887
Q ss_pred CcEEEeccC----CCcEEEEEECCCCCEEEEEEC--------------------CCeEEEEECCCCeeeeeccccccccc
Q 002407 640 RQVVDWNDL----HEMVTAACYTPDGQGALVGSY--------------------KGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 640 ~~~v~~~~~----~~~V~sla~spdg~~l~tgs~--------------------Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
.+++..-.. ...-..+-|.|..+.+++... ..++++||+.+.+.++.+.+.
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg----- 241 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG----- 241 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES------
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC-----
Confidence 766643222 123456667787777777432 357999999999999887642
Q ss_pred ccCCCCCeEEEEEcC--CCCcEEEEEECCCcEEEEEC---Ccc--eEEEEeec----------C-------CcceEEEEE
Q 002407 696 KRSHQRKITGFQFAP--GSSSEVLVTSADSRIRVVDG---IDL--VHKFKGFR----------N-------TNSQISASL 751 (927)
Q Consensus 696 ~~~h~~~Vtsl~fsp--dg~~~Llsgs~Dg~I~VwD~---~~~--~~~~~~~~----------~-------~~~v~sv~f 751 (927)
........+.|.. +...-++.+.-.++|..|-. ... ........ - ..-++.+.+
T Consensus 242 --~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 242 --EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp --TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred --CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 1122344566654 33434444555556655531 111 11111100 0 234688999
Q ss_pred ecCCCEEEEEE-CCCcEEEEECCCCCCcccccccceeee----------eeeecCCCeEEEEecCCceeEEe
Q 002407 752 TANGRYVVSAS-EDSYVYVWKYEAESRPSRSKSITVTHS----------YEHFHCQDVSVAIPWPGVGDTWG 812 (927)
Q Consensus 752 spdg~~Lasgs-~Dg~I~IWdl~s~~~~~~~~~~~~~~~----------~~~~~~~~v~vavs~~g~~~i~~ 812 (927)
|.|.++|...+ .+|.|+.||+.....|...-.+..... -..+...-.++-++++|....++
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 99999998776 689999999998776643322211111 01122223566788888864443
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.23 E-value=3.1 Score=43.58 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=42.6
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
+++.-+|++.++.-..++|...|..+++++.++.+ ....|++++|--.+-..+.++
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---------Pt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---------PTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---------CCCceEEEEecCCCccEEEEE
Confidence 45566888888888899999999999999988753 367899999975432344443
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.91 E-value=9.9 Score=47.65 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=114.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCce---------EEEEEcc---------------CCCCEEEEEECCCcEE
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV---------TCIQFNP---------------VDDRYFISGSLDAKVR 633 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V---------~~v~fsp---------------~dg~~L~sgs~Dg~I~ 633 (927)
++.|+.++.++.|.-.|..+|+.+..+.....+ ..+.+.. ..+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 478888888999999999999988887633222 1223321 1345788899999999
Q ss_pred EEeCCCCcEEEeccCCCcEE-------------EEEECC--CCCEEEEEEC----------CCeEEEEECCCCeeeeecc
Q 002407 634 IWSIPERQVVDWNDLHEMVT-------------AACYTP--DGQGALVGSY----------KGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 634 IWDl~t~~~v~~~~~~~~V~-------------sla~sp--dg~~l~tgs~----------Dg~I~IwDl~~~~~~~~~~ 688 (927)
-.|..+++.+..+..+..+. .+.-.| .+..+++|+. +|.|+-||..++++.-.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999999876544332221 111122 2345666643 6889999999999887764
Q ss_pred cccccccccC--------CCCCe-EEEEEcCCCCcEEEEEEC------------------CCcEEEEECCcceEEEEeec
Q 002407 689 INLQNKKKRS--------HQRKI-TGFQFAPGSSSEVLVTSA------------------DSRIRVVDGIDLVHKFKGFR 741 (927)
Q Consensus 689 i~~~~~~~~~--------h~~~V-tsl~fspdg~~~Llsgs~------------------Dg~I~VwD~~~~~~~~~~~~ 741 (927)
.......... ....+ ..+++.+... +++.... .+.|.-.|..+...+...+.
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~g-lvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLG-LVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCC-eEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 3211000000 00111 2334555433 3333221 13344444333333332221
Q ss_pred --CC-------cceEEEEEec-CCC---EEEEEECCCcEEEEECCCCCCccc
Q 002407 742 --NT-------NSQISASLTA-NGR---YVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 742 --~~-------~~v~sv~fsp-dg~---~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
|. ....-+.+.. +|+ .|+.++.+|.+++.|-++++.+..
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 11 1111122323 563 789999999999999999876543
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=0.79 Score=52.88 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=94.0
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCC-------EEEEEECCCcEEEEeCCCCc--EEEeccCC--
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-------YFISGSLDAKVRIWSIPERQ--VVDWNDLH-- 649 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~-------~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~-- 649 (927)
|.++.....|+-.|++.|+.+........|+-+.+.| +.+ .-+.|-.+..|.-||.+-.. .+.+...+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 4455556778999999999999988666688888887 432 23446667889999986432 23333222
Q ss_pred ---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 650 ---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 650 ---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
....|++-..+| +|++|+.+|.|++||- .+....+. +.+...+|+.+..+.+|. .+.+..+..+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA--------lPgLG~~I~hVdvtadGK--wil~Tc~tyLl 495 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA--------LPGLGDAIKHVDVTADGK--WILATCKTYLL 495 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc--------ccccCCceeeEEeeccCc--EEEEecccEEE
Confidence 355666666666 8999999999999997 33332222 147788999999999996 34445566676
Q ss_pred EEE
Q 002407 727 VVD 729 (927)
Q Consensus 727 VwD 729 (927)
+.+
T Consensus 496 Li~ 498 (644)
T KOG2395|consen 496 LID 498 (644)
T ss_pred EEE
Confidence 666
No 390
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.47 E-value=9.8 Score=45.76 Aligned_cols=197 Identities=13% Similarity=0.115 Sum_probs=113.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCC--ceEE----------EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD--YVTC----------IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~--~V~~----------v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
++.|+.++.++.|+-+|..+++.+..+.... .+.. +++ .+..++.++.|+.|.-+|..+++++-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4788888889999999999999888776322 1111 222 234677888899999999999998754
Q ss_pred ccCCCc--EEEEEECC--CCCEEEEEEC------CCeEEEEECCCCeeeeeccccccccc--------------------
Q 002407 646 NDLHEM--VTAACYTP--DGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKK-------------------- 695 (927)
Q Consensus 646 ~~~~~~--V~sla~sp--dg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~-------------------- 695 (927)
...... -..+.-+| .+..++++.. +|.|..+|..+++.+-.+........
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 432211 00111122 1234555543 68999999999998776543211100
Q ss_pred --ccCCCCCe-EEEEEcCCCCcEEEEEECC-----C-----------cEEEEECCc--ceEEEEeecCCc-------ceE
Q 002407 696 --KRSHQRKI-TGFQFAPGSSSEVLVTSAD-----S-----------RIRVVDGID--LVHKFKGFRNTN-------SQI 747 (927)
Q Consensus 696 --~~~h~~~V-tsl~fspdg~~~Llsgs~D-----g-----------~I~VwD~~~--~~~~~~~~~~~~-------~v~ 747 (927)
...-...+ ..+.+.|... +|..+... + .|.-.|..+ ..-.|+...|.. ...
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CccccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 00001112 1345666544 44444322 2 344444333 333333322211 111
Q ss_pred EEEEecCCC---EEEEEECCCcEEEEECCCCCCc
Q 002407 748 SASLTANGR---YVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 748 sv~fspdg~---~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
-+.+..+|+ .|+.+..+|.+++.|-.+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 223335776 7889999999999999998764
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.46 E-value=17 Score=45.30 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=28.4
Q ss_pred cCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCCCC
Q 002407 565 GHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSSK 598 (927)
Q Consensus 565 gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t~ 598 (927)
.+...|..+.|+|. ..|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34567899999985 67999999999999999753
No 392
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.38 E-value=2.5 Score=51.26 Aligned_cols=194 Identities=12% Similarity=0.168 Sum_probs=104.6
Q ss_pred EEEEecCCcEEEEEeCC------CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCc-----EEEEeCCC
Q 002407 571 LDLSWSKSQHLLSSSMD------KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK-----VRIWSIPE 639 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~D------gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~-----I~IWDl~t 639 (927)
.+++...+...++|+.| .++..||..+++....-.-...-..+.....++.+.++|+.||. |-.||..+
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCC
Confidence 34555566678888888 35888898888755433322111222222227888999999865 66788776
Q ss_pred CcEEEeccCCCcEEEE-EECCCCCEEEEEECCC------eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 640 RQVVDWNDLHEMVTAA-CYTPDGQGALVGSYKG------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 640 ~~~v~~~~~~~~V~sl-a~spdg~~l~tgs~Dg------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
.+--............ ...-+|+..++|+.++ .+..||..++......+.... ..-.+++...
T Consensus 406 ~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~--------R~~~g~a~~~-- 475 (571)
T KOG4441|consen 406 NKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR--------RSGFGVAVLN-- 475 (571)
T ss_pred CcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc--------cccceEEEEC--
Confidence 6543322222222222 2233688888888554 578899998877655433211 1111233333
Q ss_pred CcEEEEEECCCc-----EEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECCCc-----EEEEECCCC
Q 002407 713 SSEVLVTSADSR-----IRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASEDSY-----VYVWKYEAE 775 (927)
Q Consensus 713 ~~~Llsgs~Dg~-----I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg~-----I~IWdl~s~ 775 (927)
..++++|+.|+. |..||.....-.... .........+ ..-+++..+.|+.||. |-.||..+.
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV-VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE-EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 237777877763 666775433222221 1111111111 2235667777777764 455555443
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.19 E-value=15 Score=39.82 Aligned_cols=184 Identities=8% Similarity=0.022 Sum_probs=105.9
Q ss_pred EEEEEecCCcE-EEEEeCCC--cEEEEeCCCCcEEEEEecCC--ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 570 VLDLSWSKSQH-LLSSSMDK--TVRLWHLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 570 V~~l~~spd~~-L~Sgs~Dg--tV~lWDl~t~~~~~~~~h~~--~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
...+.|..++. +-+.+.-| .|+.+|+.+++.+....... .--.|+.. +++++.-.=.++...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45677755544 45666555 69999999999887766333 33345554 34444445567889999999998888
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.+.....-..++ .|++.|+.......|+++|..+.+....+.+.... ..-..++.+.|.. |. +.+-.-....
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g----~pv~~LNELE~i~-G~-IyANVW~td~ 196 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG----RPVSNLNELEYIN-GK-IYANVWQTDR 196 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT----EE---EEEEEEET-TE-EEEEETTSSE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC----EECCCcEeEEEEc-CE-EEEEeCCCCe
Confidence 777776666777 56888888888889999999988877766553221 2223455666653 21 2222333444
Q ss_pred EEEEECCc--ceEEEEe-------------ecCCcceEEEEEecCCCEEEEEEC
Q 002407 725 IRVVDGID--LVHKFKG-------------FRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 725 I~VwD~~~--~~~~~~~-------------~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
|...|..+ ....+.. .....-...+++.|....|...+.
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 55555322 1111111 011234678999987766555543
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.16 E-value=11 Score=40.61 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=87.2
Q ss_pred CEEEEEecCC-cEEEEEe---CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEe-CCCCc--
Q 002407 569 DVLDLSWSKS-QHLLSSS---MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWS-IPERQ-- 641 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs---~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD-l~t~~-- 641 (927)
.+...+++++ ..++... ....|+++... ...........++.-.|.+ ++...+....+...+++. ..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 6888999998 4454444 23345555443 3333322334788889999 777776666666667763 33332
Q ss_pred EE--EeccCCCcEEEEEECCCCCEEEEEE---CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 642 VV--DWNDLHEMVTAACYTPDGQGALVGS---YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 642 ~v--~~~~~~~~V~sla~spdg~~l~tgs---~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.+ .+......|+.+.++|||..++.-. .++.|.+--+....--....+.............++.+.|.+++. ++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EE
Confidence 22 2222223899999999999888766 346777765432111100000000111123456899999999886 44
Q ss_pred EEE-ECCCcEEE
Q 002407 717 LVT-SADSRIRV 727 (927)
Q Consensus 717 lsg-s~Dg~I~V 727 (927)
+.+ ..++.+..
T Consensus 181 V~~~~~~~~~~~ 192 (253)
T PF10647_consen 181 VLGRSAGGPVVR 192 (253)
T ss_pred EEeCCCCCceeE
Confidence 444 44443333
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.07 E-value=0.28 Score=38.39 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
...|.+++|+|...+||.+..||.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.77 E-value=6.3 Score=47.85 Aligned_cols=186 Identities=14% Similarity=0.184 Sum_probs=102.7
Q ss_pred cEEEEEeCC------CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC-C-----cEEEEeCCCCcEEE
Q 002407 579 QHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-A-----KVRIWSIPERQVVD 644 (927)
Q Consensus 579 ~~L~Sgs~D------gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-g-----~I~IWDl~t~~~v~ 644 (927)
..++.|+.+ ..|..+|..+++...... ....-.++++. ++.+.++|+.| | .+..||..+.+-..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 345666665 358889988886554433 44445566665 57888899998 3 47788888776443
Q ss_pred eccCCCcEEEEE-ECCCCCEEEEEECCCe-----EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 645 WNDLHEMVTAAC-YTPDGQGALVGSYKGS-----CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 645 ~~~~~~~V~sla-~spdg~~l~tgs~Dg~-----I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
.......=..+. -.-+|...++|+.||. +..||..+.+....... .....+.....-+..+.++
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m----------~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM----------LTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCC----------CcceeeeEEEEECCEEEEE
Confidence 222222111111 1236888999998864 88899888765544221 1122222222223346777
Q ss_pred EECCC------cEEEEECCcceEEEEeecCCcc-eEEEEEecCCCEEEEEECCCc-----EEEEECCCCCC
Q 002407 719 TSADS------RIRVVDGIDLVHKFKGFRNTNS-QISASLTANGRYVVSASEDSY-----VYVWKYEAESR 777 (927)
Q Consensus 719 gs~Dg------~I~VwD~~~~~~~~~~~~~~~~-v~sv~fspdg~~Lasgs~Dg~-----I~IWdl~s~~~ 777 (927)
|+.++ .+..||..+..-.....-.... -..++ .-++.+.+.|+.|+. |..||..+.+-
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 77554 4566774432222211111111 11122 236777788887763 67788777543
No 397
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.64 E-value=24 Score=40.82 Aligned_cols=240 Identities=12% Similarity=0.098 Sum_probs=117.8
Q ss_pred cCCCCeEE----EccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCC-----------cEEE
Q 002407 418 DDSQDVSF----HGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC-----------VIHV 482 (927)
Q Consensus 418 ~d~~~~~~----~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~Dg-----------tVrV 482 (927)
.++..+++ .|.....|++++..++++..- .|..-. -..+.|.+|++.|+....+. .|+.
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----GIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----EEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----cccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 44544443 367778899999988854321 222211 12399999998776665433 3788
Q ss_pred EecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC-----
Q 002407 483 WQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD----- 557 (927)
Q Consensus 483 Wdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~----- 557 (927)
|.+.+......+.-...... .....+..++++.++........-. . ...+.++..
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~-~~~~~~~~s~d~~~l~i~~~~~~~~-------s------------~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEP-FWFVSVSRSKDGRYLFISSSSGTSE-------S------------EVYLLDLDDGGSPD 266 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCT-TSEEEEEE-TTSSEEEEEEESSSSE-------E------------EEEEEECCCTTTSS
T ss_pred EECCCChHhCeeEEeecCCC-cEEEEEEecCcccEEEEEEEccccC-------C------------eEEEEeccccCCCc
Confidence 88877654423321111111 1255667778877665432222110 0 001112211
Q ss_pred CceEEEccCCCCE-EEEEecCCcEEEEEe---CCCcEEEEeCCCCcE---E-EEEecCCc--eEEEEEccCCCCEEEEEE
Q 002407 558 KPICSFQGHLDDV-LDLSWSKSQHLLSSS---MDKTVRLWHLSSKTC---L-KIFSHSDY--VTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 558 k~i~~l~gH~~~V-~~l~~spd~~L~Sgs---~DgtV~lWDl~t~~~---~-~~~~h~~~--V~~v~fsp~dg~~L~sgs 627 (927)
.....+..+...+ ..+....+.+++... ..+.|...++..... . ..+.+... +..+... .+.+++...
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~ 344 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYR 344 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEE
Confidence 1223333333333 334444333333332 235576777776652 2 34446654 4444443 344555555
Q ss_pred CCCc--EEEEeCC-CCcEEEecc-CCCcEEEEEECCCCCEEEEEEC----CCeEEEEECCCCeeee
Q 002407 628 LDAK--VRIWSIP-ERQVVDWND-LHEMVTAACYTPDGQGALVGSY----KGSCHLYNTSENKLQQ 685 (927)
Q Consensus 628 ~Dg~--I~IWDl~-t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~----Dg~I~IwDl~~~~~~~ 685 (927)
.++. |+++++. +........ ....|..+...+++..+..... -++++.||+.+++...
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 5554 8899998 444433322 2344566665566655444322 2578889998887654
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.54 E-value=1.2 Score=55.28 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=72.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC----CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH----EMV 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----~~V 652 (927)
..++.|+.-|.|-..|+...-+ .+--....+|++++|+. ++.+++.|-.+|.|.+||+..+++++.+... ..+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 4577888888888888776422 11122568999999998 9999999999999999999998877644322 355
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
..+.+..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 56666677777888887776 55543
No 399
>PHA03098 kelch-like protein; Provisional
Probab=92.25 E-value=3.6 Score=49.53 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=56.7
Q ss_pred CcEEEEEeCCC------cEEEEeCCCCcEEEEEec--C-CceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEE
Q 002407 578 SQHLLSSSMDK------TVRLWHLSSKTCLKIFSH--S-DYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVV 643 (927)
Q Consensus 578 d~~L~Sgs~Dg------tV~lWDl~t~~~~~~~~h--~-~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v 643 (927)
+..++.|+.++ .+..||..+.+....-.. . .....+.+ ++.+++.|+.++ .+..||..+.+-.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 34556665432 577888887765432221 1 11222222 677788887652 4777888776544
Q ss_pred EeccCCC--cEEEEEECCCCCEEEEEECC------CeEEEEECCCCeeee
Q 002407 644 DWNDLHE--MVTAACYTPDGQGALVGSYK------GSCHLYNTSENKLQQ 685 (927)
Q Consensus 644 ~~~~~~~--~V~sla~spdg~~l~tgs~D------g~I~IwDl~~~~~~~ 685 (927)
.....+. .-.+++ .-+++.++.|+.+ ..+..||+.+++...
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 3222211 111122 2356777777632 458899998876544
No 400
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=3.4 Score=49.81 Aligned_cols=242 Identities=13% Similarity=0.119 Sum_probs=119.6
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW- 645 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~- 645 (927)
+...++..+|.+..-.-+.--.|+|+++. |+.+..+. ....+..+.|+. ...|++...+|++++|++-.......
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~s 120 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNS 120 (829)
T ss_pred CCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccc
Confidence 34455666664321111444568888875 44444433 334888999985 55677888999999999865433221
Q ss_pred c---cCCCcEEEEEECCCCCEEEEEECCCeEEEEE-CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc-EEEEEE
Q 002407 646 N---DLHEMVTAACYTPDGQGALVGSYKGSCHLYN-TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS-EVLVTS 720 (927)
Q Consensus 646 ~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD-l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~-~Llsgs 720 (927)
. .....|..+-+..+| +++-..+|.+.+-+ ..... ....+ .. ....-.-+|-...+++.. .++..-
T Consensus 121 vg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~-~~~~~-di-----P~~~~~~~~Wt~~~~~~~~~~ll~v 191 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPK-LRKMP-DI-----PYNELPKSCWTVFQPHRQSTILLDV 191 (829)
T ss_pred cccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcch-hhhCC-CC-----CCccCCCcceeEecCCCcceeEEee
Confidence 1 111234444444455 44444456554433 22211 11111 00 111111123322222211 111110
Q ss_pred CCCcE-EEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc-cceeeeeeeecCCC
Q 002407 721 ADSRI-RVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS-ITVTHSYEHFHCQD 797 (927)
Q Consensus 721 ~Dg~I-~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~-~~~~~~~~~~~~~~ 797 (927)
.--.+ .++-... ..+..........+..+++||+.++|+--...|.|.+-.++.....-.... ......-..+..++
T Consensus 192 ~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 192 DVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred chhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 00000 1111111 111111111235678899999999999999999999888776543322210 11111123343333
Q ss_pred eEEEEecCCceeEEeecCCceeecc
Q 002407 798 VSVAIPWPGVGDTWGLQDTYLDEFS 822 (927)
Q Consensus 798 v~vavs~~g~~~i~~~~d~~i~~~~ 822 (927)
+++++|.....+++..+..+..+.
T Consensus 272 -aVvl~~e~~l~lvgp~gd~V~f~y 295 (829)
T KOG2280|consen 272 -AVVLSWEVNLMLVGPPGDSVQFYY 295 (829)
T ss_pred -ceEEEEeeeEEEEcCCCCcccccc
Confidence 667788888878777666665554
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=2.5 Score=52.97 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=90.0
Q ss_pred EEEEEecCC---cEEEEEeCCCcEEEEeCCCCcE--------EEEE----ecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 570 VLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTC--------LKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 570 V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~--------~~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
|..+...+| ..++..+.+-.|..||+.+-.. ++.- .....+.++.|+|.-....+.+..|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 344444455 2344455566799999875321 1111 133456789999955666778888999998
Q ss_pred EeCCCCc-EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 635 WSIPERQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 635 WDl~t~~-~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
..+.... .+..+......++++|+|.|+.+++|-..|++.-|-..-. ....+. ... ......|.+|+|.....
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip--~Pp---~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIP--EPP---VEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeeccc--CCC---cCCCcceeEEEEeccee
Confidence 8775433 2334566678999999999999999999999998876432 111111 110 12267899999987654
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.80 E-value=4.9 Score=48.72 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=74.8
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc--CCCCcEEEEEECCCcEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~Llsgs~Dg~I~Vw 728 (927)
.+.-+.-+.-++..++-.....+.|||.+.+.+.....+ .....|..+.|. |++. .+++.+....|.+|
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~ 101 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLY 101 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------cCCCceeeceeeecCCCC-EEEEEEcCcEEEEE
Confidence 444455555666666665666799999999886655432 456788888875 5665 68888888889888
Q ss_pred EC-----------CcceEEEEeecC-CcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 729 DG-----------IDLVHKFKGFRN-TNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 729 D~-----------~~~~~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
-. ...+..+....+ ..+|.+.+|.++|.+++.++ +.++|++-.
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 51 122333333222 25688899999997776653 468888653
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.71 E-value=0.88 Score=35.59 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=30.0
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
......|..++|+|...+||+++.+|.|.+|.+.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3445679999999999999999999999999983
No 404
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.71 E-value=1 Score=55.88 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc--EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQ--VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~--~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~ 696 (927)
-+-.++.|+..|.|...|+...- ..+-.....+|++++|+.+|..++.|-.+|.|.+||+..++..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-------- 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-------- 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee--------
Confidence 34568888888999998887632 12333445799999999999999999999999999999988877764
Q ss_pred cCCCCCeEEE---EEcCCCCcEEEEEECCCcEEEEE
Q 002407 697 RSHQRKITGF---QFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 697 ~~h~~~Vtsl---~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..+.+++ .+..++. .++++...|. +|.
T Consensus 170 -e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 170 -EHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWK 201 (1206)
T ss_pred -ecCCccceEEEEEEeCCCc-EEEEccCCCc--eEE
Confidence 333333333 3334444 6777777776 554
No 405
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.52 E-value=30 Score=37.78 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=101.2
Q ss_pred EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE---EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV---VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 600 ~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~---v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
.+..+...+-+..+.|+ +++...+..+.-++|.|+.+... +........-.++. -.|+++.++..+.-+.++
T Consensus 79 l~~~i~~~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLiv 153 (370)
T COG5276 79 LLSVINARDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIV 153 (370)
T ss_pred eEEEEehhhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEE
Confidence 34444566777888885 46788888888899999987543 33333333344444 458899998877778888
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCc-ceEEEEEecC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTN-SQISASLTAN 754 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~-~v~sv~fspd 754 (927)
|+.+.......- +.......-..++.+- + .-..+..|+-+.|.|... ...++.++.+.. .+.++..+++
T Consensus 154 dvsdpssP~lag------rya~~~~d~~~v~ISG--n-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 154 DVSDPSSPQLAG------RYALPGGDTHDVAISG--N-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred ECCCCCCceeee------eeccCCCCceeEEEec--C-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence 887654322110 0012222334555554 2 566677888899999543 344555555555 5667777766
Q ss_pred CCEEEEEECCCcEEEEECCCCCCcc
Q 002407 755 GRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 755 g~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
--+++.. +--+.+-|..+.+.+.
T Consensus 225 r~y~vvy--~egvlivd~s~~ssp~ 247 (370)
T COG5276 225 RAYLVVY--DEGVLIVDVSGPSSPT 247 (370)
T ss_pred eeEEEEc--ccceEEEecCCCCCce
Confidence 5555544 3457788887766543
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=90.50 E-value=35 Score=38.50 Aligned_cols=154 Identities=11% Similarity=0.136 Sum_probs=84.2
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEE-EeCCCCc-EEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRI-WSIPERQ-VVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~I-WDl~t~~-~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
...+.++.+.| ++.+++++ ..|.+.. ++ ..++ -.. .......++.+.+.+++..++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 45688999998 77655544 4565443 22 2222 211 22334678999999999877765 457665323444443
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE-ECCcceEEEEe-ecCCcceEEEEEecCCCEEEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV-DGIDLVHKFKG-FRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw-D~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasg 761 (927)
....... .......++.+.+.+++. +++++.+|.|..- |...--..... .........+.|..+++.+++
T Consensus 248 W~~~~~~-----~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (334)
T PRK13684 248 WSKPIIP-----EITNGYGYLDLAYRTPGE--IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL- 319 (334)
T ss_pred cccccCC-----ccccccceeeEEEcCCCC--EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-
Confidence 2221110 011234578889998664 5666677766542 22111111111 111234667777777666554
Q ss_pred ECCCcEEEEEC
Q 002407 762 SEDSYVYVWKY 772 (927)
Q Consensus 762 s~Dg~I~IWdl 772 (927)
+..|.|..|+-
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 56788887753
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.05 E-value=7.2 Score=46.09 Aligned_cols=154 Identities=13% Similarity=0.140 Sum_probs=82.3
Q ss_pred CceEEEEEccCCCCEEEEEE---CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC----CCEEEEEECCCeEEEEECCC
Q 002407 608 DYVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD----GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs---~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd----g~~l~tgs~Dg~I~IwDl~~ 680 (927)
.+|..++|. ||+.++-.. ..|.+++=| .. .++.-+.|..++|.|- -..+++.-....|.+|.+..
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGd---s~---viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGD---SK---VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCC---cc---EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578889997 565544322 122222211 11 2223356888999984 33566667788999999863
Q ss_pred C-----eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecC
Q 002407 681 N-----KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTAN 754 (927)
Q Consensus 681 ~-----~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspd 754 (927)
. +......-++. ....---.++.|+|... .|++-.....-.+++... ....-......+.|.+.||.+|
T Consensus 92 s~~e~~K~l~sQtcEi~----e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR----EPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred Cccccccceeeeeeecc----CCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 2 22211110000 01111224677999876 444433333323333221 1111112245678999999999
Q ss_pred CCEEEEEE-CCCcEEEEECCC
Q 002407 755 GRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 755 g~~Lasgs-~Dg~I~IWdl~s 774 (927)
|+.|+.+- ..=.-||||-..
T Consensus 167 G~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCEEEEEeCCeEEEEEecCch
Confidence 99887663 334578898654
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.70 E-value=4 Score=51.30 Aligned_cols=125 Identities=15% Similarity=0.117 Sum_probs=83.2
Q ss_pred cEEEEEECCCCCEEEEEECC--CeEEEEECCCCeeeeecc-ccccc-ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 651 MVTAACYTPDGQGALVGSYK--GSCHLYNTSENKLQQKSP-INLQN-KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~D--g~I~IwDl~~~~~~~~~~-i~~~~-~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.+..+...+|+...++.... -.|..||++........+ ..+.. +..........++.|.|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 55566667777665554333 379999998654332111 00100 111233345678889997766788889999999
Q ss_pred EEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 727 VVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 727 VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|..+...........-...+++++|+|.|+.++.|-..|++.-|...-.
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 9875544443333445667899999999999999999999999876554
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=89.59 E-value=11 Score=42.95 Aligned_cols=98 Identities=7% Similarity=0.023 Sum_probs=55.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCC-----cEEEE---Eec-----CCceEEEEEccCCCCEEEEEECC------
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-----TCLKI---FSH-----SDYVTCIQFNPVDDRYFISGSLD------ 629 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~-----~~~~~---~~h-----~~~V~~v~fsp~dg~~L~sgs~D------ 629 (927)
....|++.+++ |+.+.....+++.|.... +.... +.. ......++|.| ++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceec
Confidence 34667777778 555555544444454321 21111 221 34477899999 88776654421
Q ss_pred -------------CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEE
Q 002407 630 -------------AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGS 668 (927)
Q Consensus 630 -------------g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs 668 (927)
|.|.-++..+++...+.........++|+|+|+++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555665555444433344567889999888776543
No 410
>PHA02713 hypothetical protein; Provisional
Probab=89.56 E-value=15 Score=44.60 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred cEEEEeCCCCcEEEEEecCCc--eEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEeccCCCcE-EEEEECC
Q 002407 589 TVRLWHLSSKTCLKIFSHSDY--VTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLHEMV-TAACYTP 659 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~h~~~--V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~~~~~~V-~sla~sp 659 (927)
.+..||..+++....-....+ -.+++.. ++.+++.|+.+ ..+..||..+..-.........- ...+..-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence 466778777654432221111 1223332 67777787754 24778888776543332222111 1112233
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeeee
Q 002407 660 DGQGALVGSYKG-----SCHLYNTSENKLQQ 685 (927)
Q Consensus 660 dg~~l~tgs~Dg-----~I~IwDl~~~~~~~ 685 (927)
+|+..++|+.++ .+..||..+.....
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 678888888754 48899998876544
No 411
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.44 E-value=22 Score=37.55 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=100.6
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCC---CEEEEEECCCcEEEEeCCCC--cEEEe-c-----cC
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDD---RYFISGSLDAKVRIWSIPER--QVVDW-N-----DL 648 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~--~~v~~-~-----~~ 648 (927)
++..-=..+.|.-||+.+.+..+.--...++..+.+ |..+ .+.+.++..-.|--||.... .+... + ..
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCcceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 344444566777799887654433222222333333 2122 22333333223444663222 22211 1 11
Q ss_pred CCcEEEEEECCCCCEEEEEECC----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYK----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~D----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
+...+....+|+|++ ..|.+. |.++.|-....-... ...-.--+.++|+.+.+.+.++
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i-----------~~~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELI-----------WNCVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceee-----------ehhccCCccccccccCcEEEEE
Confidence 345667778999998 444432 344444332211110 1233344678899887777788
Q ss_pred EECCCcEEEEEC-------CcceEEEEeec----CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc
Q 002407 719 TSADSRIRVVDG-------IDLVHKFKGFR----NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 719 gs~Dg~I~VwD~-------~~~~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~ 781 (927)
-+.+-.|.-||. .+....+.... .....-.+++..+|++.++.-..++|...|..+++.+...
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei 249 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI 249 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE
Confidence 888888988881 11122222211 1111124566778888888888999999999998876544
No 412
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=89.25 E-value=0.86 Score=47.51 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=59.6
Q ss_pred cEEEEEeCCCcEEEEeCCCC-cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC--cEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSK-TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--MVTA 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~-~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~--~V~s 654 (927)
..++.|+.+|.|.+|+.... .....+. ....|.++--.-.++.+..+++.||.|+.|++.-.+.+....++. .+..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 57999999999999988721 1111111 223333333222255689999999999999998888776655543 3333
Q ss_pred EEECCCCCEEEEE--ECCCeEEEEECC
Q 002407 655 ACYTPDGQGALVG--SYKGSCHLYNTS 679 (927)
Q Consensus 655 la~spdg~~l~tg--s~Dg~I~IwDl~ 679 (927)
+..+..+..++.+ +.+..++.|++.
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchh
Confidence 3333333444444 444445555443
No 413
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.08 E-value=17 Score=39.19 Aligned_cols=149 Identities=14% Similarity=0.113 Sum_probs=87.1
Q ss_pred ceEEEEEccCCCCEEEEEE---CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEE-CCCCeee
Q 002407 609 YVTCIQFNPVDDRYFISGS---LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYN-TSENKLQ 684 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs---~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwD-l~~~~~~ 684 (927)
.+...++++ ++..++... ....|+++....... ... ....++...|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVR-PVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcce-eec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999 888776655 223355554433222 222 334788899999987777766666666663 3333222
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEE----CCc----ceEEEEee-cCCcceEEEEEec
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVD----GID----LVHKFKGF-RNTNSQISASLTA 753 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD----~~~----~~~~~~~~-~~~~~v~sv~fsp 753 (927)
.. .+.. ......|+.+.++|||.++.++.. .++.|.|-- ... +....... .....+..+.|.+
T Consensus 102 ~~-~v~~-----~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 PV-EVDW-----PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eE-Eecc-----cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11 1110 111128999999999986555553 346666653 111 11111111 2245688999999
Q ss_pred CCCEEEEEECCCc
Q 002407 754 NGRYVVSASEDSY 766 (927)
Q Consensus 754 dg~~Lasgs~Dg~ 766 (927)
++.+++.+...+.
T Consensus 176 ~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 176 DSTLVVLGRSAGG 188 (253)
T ss_pred CCEEEEEeCCCCC
Confidence 9988877765443
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.05 E-value=44 Score=37.60 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCC------cEEEEEECCCcEEEEECC---cceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 700 QRKITGFQFAPGSS------SEVLVTSADSRIRVVDGI---DLVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 700 ~~~Vtsl~fspdg~------~~Llsgs~Dg~I~VwD~~---~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
...++.+.|..... .++++.-..+.|...... .......... ....+..+++.|||.+.++-..+|.|+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 35677777765321 134444445566666532 1111112122 233688999999999988888888875
No 415
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.13 E-value=58 Score=37.84 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=32.7
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccccc
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSI 784 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~ 784 (927)
..+.+++.+|++++.|+...=|.|.++|+.++....--|+.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 44678899999999999888899999999987655444443
No 416
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.08 E-value=15 Score=35.45 Aligned_cols=104 Identities=10% Similarity=0.150 Sum_probs=72.9
Q ss_pred cEEEEEeCCCcEEEEeCCC--------CcEEEEEecCCceEEEEEccC----CCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 579 QHLLSSSMDKTVRLWHLSS--------KTCLKIFSHSDYVTCIQFNPV----DDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t--------~~~~~~~~h~~~V~~v~fsp~----dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
..|+.++.-+.|.|++... ...+..+.....|++|+-.+. ....|+.|+. ..|..||+....-+...
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk 89 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK 89 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence 4578888889999998763 345667778888999876553 3556776664 67999999988877778
Q ss_pred cCCCcEEEEEECC----CCCEEEEEECCCeEEEEECCCCeee
Q 002407 647 DLHEMVTAACYTP----DGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 647 ~~~~~V~sla~sp----dg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
+.++.+.++.+-. ...++++| .+..|.-||....+..
T Consensus 90 e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 90 EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIF 130 (136)
T ss_pred hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEE
Confidence 8888898888743 33445554 3556666666554443
No 417
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.74 E-value=0.052 Score=65.32 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=21.5
Q ss_pred eecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q 002407 452 IQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVV 486 (927)
Q Consensus 452 L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~ 486 (927)
++|..|.|-.+.|-. +-..++ -.=|.+.||++.
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd 161 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVD 161 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehH
Confidence 367888899999954 222222 334678899876
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=87.41 E-value=19 Score=42.84 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=58.2
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEEeccCC
Q 002407 579 QHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 579 ~~L~Sgs~D-----gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~~~~~~ 649 (927)
..++.|+.+ .++..||..++.....-. ....-.+++. - ++.+.+.|+.++ .+..||..+.+-.......
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-E-CCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345666644 357778888766544332 1111112222 2 677777887643 5778887766544433332
Q ss_pred CcE-EEEEECCCCCEEEEEECCC---eEEEEECCCCeeeee
Q 002407 650 EMV-TAACYTPDGQGALVGSYKG---SCHLYNTSENKLQQK 686 (927)
Q Consensus 650 ~~V-~sla~spdg~~l~tgs~Dg---~I~IwDl~~~~~~~~ 686 (927)
... ...+..-+|+..++|+.++ .+..||..+......
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 211 1122233677888887653 477899887765543
No 419
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.38 E-value=1.8 Score=33.07 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEecCcC
Q 002407 457 GSIWSIKFSLDG---RYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 457 ~~I~~vafSpdG---~~LaSgs~DgtVrVWdv~~~ 488 (927)
|+|.+|+|||+. .+||.+-.-+.|.|+|+.+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 579999999854 48888888899999999853
No 420
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.20 E-value=20 Score=42.53 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=91.4
Q ss_pred CCEEEEEecCC-cEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEccC---CCCEEEEEECCCcEEEEeCCC--
Q 002407 568 DDVLDLSWSKS-QHLLSSS--MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV---DDRYFISGSLDAKVRIWSIPE-- 639 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs--~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~---dg~~L~sgs~Dg~I~IWDl~t-- 639 (927)
.+|..++|... ..++|.- ..|.+++=| ...+..| ..|..+.|.|. +-..|++......|.||-+--
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 46788999765 3444442 233333322 1233333 34788999883 122455566678899998742
Q ss_pred ---CcEEE--eccCCC----cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 640 ---RQVVD--WNDLHE----MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 640 ---~~~v~--~~~~~~----~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.+.+. .....+ -...+.|+|....|++-+....-.+++++......+.. ....+.|.|.+|.+
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaD--------i~~~G~IhCACWT~ 165 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKAD--------IKTSGLIHCACWTK 165 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEe--------ccCCceEEEEEecC
Confidence 22221 112211 23456799999888887766665667765433322222 25667899999999
Q ss_pred CCCcEEEEEECCCcEEEEEC
Q 002407 711 GSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~ 730 (927)
||.+++++.+..=.-+|||.
T Consensus 166 DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCEEEEEeCCeEEEEEecC
Confidence 99977776677667889993
No 421
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.81 E-value=45 Score=36.79 Aligned_cols=113 Identities=10% Similarity=0.134 Sum_probs=65.8
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCC------CC-cEEEecc------CCCcEEEEEECCCCC------------EE
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIP------ER-QVVDWND------LHEMVTAACYTPDGQ------------GA 664 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~------t~-~~v~~~~------~~~~V~sla~spdg~------------~l 664 (927)
-+.|+|+| .+.+-++...-+...+||.. .. .++..+. .+...+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 57899999 77777777777889999986 12 2222222 124567777764332 26
Q ss_pred EEEECCCeEEEEECCCCee---eeecccccccccccCC-CCCeEEEEEcCC--CCcEEEEEECCCcEEEEE
Q 002407 665 LVGSYKGSCHLYNTSENKL---QQKSPINLQNKKKRSH-QRKITGFQFAPG--SSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h-~~~Vtsl~fspd--g~~~Llsgs~Dg~I~VwD 729 (927)
+.++++|+|.-|...-... .....+. ... ...-..+++... +..+.++--..++|.|||
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d------~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVD------ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEc------cCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 7788999999998543322 1111110 111 222334555532 343444445678888888
No 422
>PRK10115 protease 2; Provisional
Probab=86.45 E-value=97 Score=38.66 Aligned_cols=192 Identities=7% Similarity=0.032 Sum_probs=86.3
Q ss_pred EEEecCC-cEEE-EEeCC-----CcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCCCEEEEEEC---CCcEEEEeC-
Q 002407 572 DLSWSKS-QHLL-SSSMD-----KTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSI- 637 (927)
Q Consensus 572 ~l~~spd-~~L~-Sgs~D-----gtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl- 637 (927)
.++|.++ +.|+ +...+ ..|+.+++.++ +-..++. ......-..+.+.++++++..+. ++.+.+|+.
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 3677766 3333 33222 36888888887 4444454 22223212232326776655443 346888884
Q ss_pred -CCCcEEEeccCC-CcEEEEEECCCCCEEEEEECC----CeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 638 -PERQVVDWNDLH-EMVTAACYTPDGQGALVGSYK----GSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 638 -~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~D----g~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
.++......... .....+. +.. ..|..-+.. ..|...++.. ++....+. ......|..+.+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~--------~~~~~~i~~~~~~~ 325 (686)
T PRK10115 256 LADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIP--------PRENIMLEGFTLFT 325 (686)
T ss_pred CCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEEC--------CCCCCEEEEEEEEC
Confidence 334322222222 2222222 222 334443332 2343344432 11111100 11234678888873
Q ss_pred CCCcEEEEEECCCcEEEE--ECCc-ceEEEEeecCCcceEEEEEe--cCC-CEEEEEE---CCCcEEEEECCCCC
Q 002407 711 GSSSEVLVTSADSRIRVV--DGID-LVHKFKGFRNTNSQISASLT--ANG-RYVVSAS---EDSYVYVWKYEAES 776 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~Vw--D~~~-~~~~~~~~~~~~~v~sv~fs--pdg-~~Lasgs---~Dg~I~IWdl~s~~ 776 (927)
..++++...++.-+++ +... ....+.. .....+..+.++ +++ .++++.+ .-+.++.||+.++.
T Consensus 326 --~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 326 --DWLVVEERQRGLTSLRQINRKTREVIGIAF-DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred --CEEEEEEEeCCEEEEEEEcCCCCceEEecC-CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3466666767665554 4321 2222221 111222223344 333 3444443 34668888887753
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=86.20 E-value=18 Score=41.31 Aligned_cols=150 Identities=9% Similarity=0.076 Sum_probs=75.2
Q ss_pred CceEEEEEccCCCCEEEEEE-----------CCC-cEEEEeCCC--CcE---EEeccCCCcEEEEEECCCCCEEEEEECC
Q 002407 608 DYVTCIQFNPVDDRYFISGS-----------LDA-KVRIWSIPE--RQV---VDWNDLHEMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs-----------~Dg-~I~IWDl~t--~~~---v~~~~~~~~V~sla~spdg~~l~tgs~D 670 (927)
.....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ..+...-.....+++.++| |+++...
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 4466788988 888776643 123 677775432 322 2233333456889999988 4444444
Q ss_pred CeEEEEECCCCeee----eecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC------------------CCcEEEE
Q 002407 671 GSCHLYNTSENKLQ----QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA------------------DSRIRVV 728 (927)
Q Consensus 671 g~I~IwDl~~~~~~----~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~------------------Dg~I~Vw 728 (927)
...++.|....... ..+...+.. ....+......++|.|+|..++..++. .+.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 33334455321100 000000000 001124557889999998633333321 0345555
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
+........... .......++|+++|+++++-.
T Consensus 170 ~pdg~~~e~~a~-G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAH-GFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEec-CcCCCccceECCCCCEEEEcc
Confidence 533211111111 223346789999998877644
No 424
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.77 E-value=77 Score=36.88 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=46.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 620 DRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 620 g~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
..+|++-+.||.+.+|+-+.-........---...++|.+.-..|++++.+..+..|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 467888999999999997665544444444455668889988899999998888888753
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.22 E-value=19 Score=43.90 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=69.8
Q ss_pred eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEEC--CCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYT--PDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~s--pdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
++-+.-+. -++.-++-+....+.|||...+.+.... ...+.|..+.|. |+++.+++.+-.+.|.+|--.......
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33344443 3444444344456999999988765433 447889999885 689999998899999998642111000
Q ss_pred ecc--cccccccccCCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 686 KSP--INLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 686 ~~~--i~~~~~~~~~h~-~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
..+ ..+.......++ .+|.+..|.++|. ++++ .++++.|+|
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--LvV~-sGNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--LVVG-SGNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCe--EEEE-eCCEEEEEC
Confidence 000 000111112333 6789999999883 4444 366788887
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.93 E-value=69 Score=35.60 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=86.3
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--E
Q 002407 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--V 643 (927)
Q Consensus 570 V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v 643 (927)
...|.|..+..+++| ..+ +.+...+.++.-..+. .......+.... ++. +...+..|.|..= .+.++- .
T Consensus 64 l~~I~f~~~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~-~~l~~~~G~iy~T-~DgG~tW~~ 138 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGS-AELAGDRGAIYRT-TDGGKTWQA 138 (302)
T ss_dssp EEEEEEETTEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTE-EEEEETT--EEEE-SSTTSSEEE
T ss_pred EEEEEecCCceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCc-EEEEcCCCcEEEe-CCCCCCeeE
Confidence 456777655434444 344 3444444454333332 223334444444 343 3334445554322 222321 1
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
........+..+..++||++++++..-....-||.-........ +....+|..|.|.|++. |......|
T Consensus 139 ~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~---------r~~~~riq~~gf~~~~~--lw~~~~Gg 207 (302)
T PF14870_consen 139 VVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN---------RNSSRRIQSMGFSPDGN--LWMLARGG 207 (302)
T ss_dssp EE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------SSS-EEEEEE-TTS---EEEEETTT
T ss_pred cccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc---------cCccceehhceecCCCC--EEEEeCCc
Confidence 22344467888999999998888865555667775432222111 34568899999999975 44455889
Q ss_pred cEEEEECCcceEEEEee-----cCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 724 RIRVVDGIDLVHKFKGF-----RNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
.|+.=+.......+... ...-.+..++|.+++...|+|+ .|.++
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 99988733333333221 1233478899999887777665 45443
No 427
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.51 E-value=1.2e+02 Score=38.16 Aligned_cols=155 Identities=10% Similarity=0.068 Sum_probs=87.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE-------------EEEEccC-CCCEEEEEEC----------CCcEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT-------------CIQFNPV-DDRYFISGSL----------DAKVRI 634 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~-------------~v~fsp~-dg~~L~sgs~----------Dg~I~I 634 (927)
++++.++.|+.|.-.|..+|+.+..|.....|. .+.-.|. .+..+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 678889999999999999999988776443331 1111110 2345666643 688999
Q ss_pred EeCCCCcEEEeccCC-------------------CcEEEEEECCCCCEEEEEE------------------CCCeEEEEE
Q 002407 635 WSIPERQVVDWNDLH-------------------EMVTAACYTPDGQGALVGS------------------YKGSCHLYN 677 (927)
Q Consensus 635 WDl~t~~~v~~~~~~-------------------~~V~sla~spdg~~l~tgs------------------~Dg~I~IwD 677 (927)
+|+.+++++-..... ..-..+++.+....+..+. ..+.|.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 999999887432210 0112345555554544432 124577778
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcC-CCC--cEEEEEECCCcEEEEECCcc
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSS--SEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~--~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+.+++..-.++...+..-.........=+.+.. ++. ..++.+..+|.++++|..+.
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 888887766653110000000001111111222 331 26888899999999995443
No 428
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.34 E-value=87 Score=36.27 Aligned_cols=152 Identities=10% Similarity=0.069 Sum_probs=81.0
Q ss_pred eEEEEEccCCCCEEEEEECCCcE-EEEeCCCCc-EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 610 VTCIQFNPVDDRYFISGSLDAKV-RIWSIPERQ-VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 610 V~~v~fsp~dg~~L~sgs~Dg~I-~IWDl~t~~-~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
...+...+ ++.+++.+.. |.+ +-||--... ..........++.+.+.+++..++++ ..|.+. +....++.....
T Consensus 241 f~~v~~~~-dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSP-DGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcC-CCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 34455566 6666655543 443 334322111 12233345678999999999877766 556654 333344311100
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC-Cc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-ID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~-~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+. ..........++.+.|.+++ .+++++..|.|.+... .+ .........-......+.|.++++.+++| .+|
T Consensus 317 ~f~--~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G 391 (398)
T PLN00033 317 DFE--EADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDG 391 (398)
T ss_pred cee--ecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCc
Confidence 000 00001233458999999876 4777888888877652 21 12211111223456788887777666655 678
Q ss_pred cEEEE
Q 002407 766 YVYVW 770 (927)
Q Consensus 766 ~I~IW 770 (927)
.|.-|
T Consensus 392 ~il~~ 396 (398)
T PLN00033 392 VLLRY 396 (398)
T ss_pred EEEEe
Confidence 77655
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.24 E-value=19 Score=37.37 Aligned_cols=130 Identities=11% Similarity=0.035 Sum_probs=79.1
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE---EeccCC---CcEEEEEECC
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLH---EMVTAACYTP 659 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v---~~~~~~---~~V~sla~sp 659 (927)
.+|.-.++|..+-+++..+...+.=+.++. ++..|+.+....+++.-|..+-... +..... ..++.+.|-
T Consensus 109 ~egvaf~~d~~t~~~lg~~~y~GeGWgLt~---d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V- 184 (262)
T COG3823 109 KEGVAFKYDADTLEELGRFSYEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV- 184 (262)
T ss_pred ccceeEEEChHHhhhhcccccCCcceeeec---CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence 467788899999999999888888888876 4445666555556666665543221 111111 233334443
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
+|...+-.-.+..|...+..+++....+.+..-.+. ...+..-.+.+++.|+...++++|
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 455555555566677777777777666543221111 124456788999999887666655
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.21 E-value=8.9 Score=44.40 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=87.4
Q ss_pred CCCEEE-EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC-------EEEEEECCCeEEEEECCCCe--eeeecc
Q 002407 619 DDRYFI-SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-------GALVGSYKGSCHLYNTSENK--LQQKSP 688 (927)
Q Consensus 619 dg~~L~-sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~-------~l~tgs~Dg~I~IwDl~~~~--~~~~~~ 688 (927)
+..+|+ .|.....++--|+.-|+++..-..+..+ -+.|.|+.+ .-++|-.+..|.-.|.+-.. +.....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4455566777889999998866666666 678888542 23455556666666665322 111100
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
- .-.......+..-...| ++++++..|-|++||-.....+.........|..+..+.+|++|++.+. ..|.
T Consensus 557 K------dY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yll 627 (776)
T COG5167 557 K------DYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLL 627 (776)
T ss_pred h------hccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEE
Confidence 0 00111222333333333 8999999999999994332222222333556788899999999887764 5677
Q ss_pred EEECCC
Q 002407 769 VWKYEA 774 (927)
Q Consensus 769 IWdl~s 774 (927)
+-|+.-
T Consensus 628 L~d~~i 633 (776)
T COG5167 628 LTDVPI 633 (776)
T ss_pred EEeccc
Confidence 777754
No 431
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.19 E-value=57 Score=39.95 Aligned_cols=135 Identities=12% Similarity=0.188 Sum_probs=83.2
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEE-EEe---cCCceEEEEEccCCCCEEEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK-IFS---HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~-~~~---h~~~V~~v~fsp~dg~~L~sg 626 (927)
.+|..++..+..+.-..+.+..+.|+.+..|+....+|++++|++-...... ... ....|..+.|.. +|-.+++.
T Consensus 67 ~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~GVavlt~ 145 (829)
T KOG2280|consen 67 RIFNISGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NGVAVLTV 145 (829)
T ss_pred EEEeccccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-CceEEEec
Confidence 6788888888877766669999999999999999999999999986322111 010 112233333322 33222222
Q ss_pred ECCCcE---------EEEeCCC---------------C--------------------------cEEEeccCCCcEEEEE
Q 002407 627 SLDAKV---------RIWSIPE---------------R--------------------------QVVDWNDLHEMVTAAC 656 (927)
Q Consensus 627 s~Dg~I---------~IWDl~t---------------~--------------------------~~v~~~~~~~~V~sla 656 (927)
+|.+ .+|.+.. . +..........+..+.
T Consensus 146 --~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 146 --SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKIS 223 (829)
T ss_pred --CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEE
Confidence 2222 2222211 0 0001111224577888
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
++|+.++|+.=..+|.|.+-++...+....+.
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 99999999999999999998887766655543
No 432
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.73 E-value=18 Score=45.01 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=53.3
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC---------Cee---eeecccccccccccCCCCCeEEEEEcCCC--CcE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE---------NKL---QQKSPINLQNKKKRSHQRKITGFQFAPGS--SSE 715 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---------~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~ 715 (927)
..|..+.++|+|.+++..+..|.+.+.=.+. ++. .....+..... .......|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCCCCCCCe
Confidence 5789999999999999998877654433221 111 11111111110 12345678999999974 358
Q ss_pred EEEEECCCcEEEEECC
Q 002407 716 VLVTSADSRIRVVDGI 731 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~ 731 (927)
|++-..|++||+||..
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999954
No 433
>PRK13684 Ycf48-like protein; Provisional
Probab=82.56 E-value=91 Score=35.14 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=88.0
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 567 ~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
...+.++.+.+++.++..+..|.+..-.-..++.-.... -...++++.+.+ ++..++++ ..|.+++=..+.+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 456788899998777777777766542112222222222 456789999998 77766655 55766432334443222
Q ss_pred ecc-----CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 645 WND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 645 ~~~-----~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
... ....+..+.+.+++..+++| .+|.+. .....++....... ........+.+.|..++ ..++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~------~~~~~~~~~~~~~~~~~--~~~~~ 319 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPV------GEEVPSNFYKIVFLDPE--KGFVL 319 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCc------CCCCCcceEEEEEeCCC--ceEEE
Confidence 111 12357889999988755544 567654 34444443332110 01222457778877655 46778
Q ss_pred ECCCcEEEEEC
Q 002407 720 SADSRIRVVDG 730 (927)
Q Consensus 720 s~Dg~I~VwD~ 730 (927)
+..|.|..|+.
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 88888887763
No 434
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.17 E-value=86 Score=34.57 Aligned_cols=171 Identities=11% Similarity=0.134 Sum_probs=89.4
Q ss_pred cEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCC----CEEEEE-ECCCcEEEEeCCCCcEEEeccC--------
Q 002407 589 TVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDD----RYFISG-SLDAKVRIWSIPERQVVDWNDL-------- 648 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~-------h~~~V~~v~fsp~dg----~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~-------- 648 (927)
.|.+||+.+++.++++. ....+..+.+...++ .+++.. ...+.|.|+|+.+++.-....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68899999999988885 245678888876322 244333 3345799999998765443222
Q ss_pred ------------CCcEEEEEECC---CCCEEEEEECCCeEEEEECCCCeeeeecccccc----cccccCC-CCCeEEEEE
Q 002407 649 ------------HEMVTAACYTP---DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKRSH-QRKITGFQF 708 (927)
Q Consensus 649 ------------~~~V~sla~sp---dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----~~~~~~h-~~~Vtsl~f 708 (927)
.+.+..++.+| ++++|.-....+. ++|.+.+..+......... ..+..+. .....++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12345555544 4444544433221 2222221111000000000 0000111 235667888
Q ss_pred cCCCCcEEEEEECCCcEEEEECCc-----ceEEEE-eecCCcceEEEEEec--CCCEEEEE
Q 002407 709 APGSSSEVLVTSADSRIRVVDGID-----LVHKFK-GFRNTNSQISASLTA--NGRYVVSA 761 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~-----~~~~~~-~~~~~~~v~sv~fsp--dg~~Lasg 761 (927)
.++|. ++++--..+.|..|+... ....+. ....-..+..+.+.+ +|.+.+..
T Consensus 194 D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 88764 677778889999999665 223332 222245667888888 66555544
No 435
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=81.75 E-value=63 Score=36.28 Aligned_cols=145 Identities=12% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCCEEEEEecCC-cEEEEEeCCCc------EEEEeCCCC----cEEEEE---e---cCC--------ceEEEEEccCCCC
Q 002407 567 LDDVLDLSWSKS-QHLLSSSMDKT------VRLWHLSSK----TCLKIF---S---HSD--------YVTCIQFNPVDDR 621 (927)
Q Consensus 567 ~~~V~~l~~spd-~~L~Sgs~Dgt------V~lWDl~t~----~~~~~~---~---h~~--------~V~~v~fsp~dg~ 621 (927)
-+.+..|.+.++ +.+++.+.++. +..+++... ..+... . ..+ ..-+|++.+ ++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence 356778888854 88888888888 766665541 111111 1 111 334788855 888
Q ss_pred EEEEEECC------CcEEEEeCCCCcEEEec----------------cCCCcEEEEEECCCCCEEEEEECCC--------
Q 002407 622 YFISGSLD------AKVRIWSIPERQVVDWN----------------DLHEMVTAACYTPDGQGALVGSYKG-------- 671 (927)
Q Consensus 622 ~L~sgs~D------g~I~IWDl~t~~~v~~~----------------~~~~~V~sla~spdg~~l~tgs~Dg-------- 671 (927)
++++.-.+ ..|..++.. ++.+..+ ..+....+|+++|+|+.|+++....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77776666 678888866 4432211 2235788999999999777654321
Q ss_pred ------eEEE--EECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 672 ------SCHL--YNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 672 ------~I~I--wDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
.++| ||..+ +.....+.+.+...........|..+.+.+++.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 1444 45444 322333222221100111456788888888775
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.59 E-value=0.8 Score=55.69 Aligned_cols=115 Identities=14% Similarity=0.195 Sum_probs=68.9
Q ss_pred EccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCC--CCcEEE-----EEe-cCCceEEEEEccC--CCCEEEEEECCC
Q 002407 563 FQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS--SKTCLK-----IFS-HSDYVTCIQFNPV--DDRYFISGSLDA 630 (927)
Q Consensus 563 l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~--t~~~~~-----~~~-h~~~V~~v~fsp~--dg~~L~sgs~Dg 630 (927)
++|..+.|..|.|-.. .+++ -.-|.+.||++. .|+... ... ...++.-|.|.|. +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4577788888888543 2233 334678899876 333222 111 3334444555442 456677777788
Q ss_pred cEEEEeCCCCcEEEeccCCCc-----------EEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 631 KVRIWSIPERQVVDWNDLHEM-----------VTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~~-----------V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
.|++..+.....-.+..|... +.--.++|||+.|+.++.||.+++|.+.
T Consensus 206 ~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 206 EIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 888877654322111112222 2222379999999999999999999765
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.17 E-value=11 Score=39.78 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-------c--------cCCCcEEEEEECCCCCEEEEEECCC
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-------N--------DLHEMVTAACYTPDGQGALVGSYKG 671 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-------~--------~~~~~V~sla~spdg~~l~tgs~Dg 671 (927)
..++..+.. .+++|++.+.+|.+++||+.+++.+.. . .....|..+.++.+|.-+++-+ +|
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 344444443 678899999999999999999876531 1 2446788889998887666554 57
Q ss_pred eEEEEECCCCeeee
Q 002407 672 SCHLYNTSENKLQQ 685 (927)
Q Consensus 672 ~I~IwDl~~~~~~~ 685 (927)
..+.|+..-+..+.
T Consensus 88 ~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 88 DSYSYSPDLGCWIR 101 (219)
T ss_pred CEEEeccccceeEE
Confidence 88999877655443
No 438
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.00 E-value=1.2e+02 Score=35.38 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=32.0
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
..+.+++.+|.+++.++...=|.|.++|+..+..+...
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 35889999999999999888899999999988766543
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=80.95 E-value=19 Score=44.23 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=71.3
Q ss_pred cEEEEEECC--CCCEEEEEECCCeEEEEECCCCe-----e----ee-ecccccccccccCCCCCeEEEEEc--CCCCcEE
Q 002407 651 MVTAACYTP--DGQGALVGSYKGSCHLYNTSENK-----L----QQ-KSPINLQNKKKRSHQRKITGFQFA--PGSSSEV 716 (927)
Q Consensus 651 ~V~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~-----~----~~-~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~L 716 (927)
.|+.+.... +...|+++..||.|.+|.+..-. . .. .........-.......+++++++ ... ++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEE
Confidence 355554433 45678999999999999763210 0 00 000000000112334578899988 543 477
Q ss_pred EEEECCCcEEEEECCc---ceEEEEeecCCcceEEEEEecCC-----C-EEEEEECCCcEEEEEC
Q 002407 717 LVTSADSRIRVVDGID---LVHKFKGFRNTNSQISASLTANG-----R-YVVSASEDSYVYVWKY 772 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg-----~-~Lasgs~Dg~I~IWdl 772 (927)
++++....|.||-... .......+.+...|.+++|-++. . +|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7888888888875211 11111122345667888887643 2 7888999999999888
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.64 E-value=27 Score=33.77 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=67.0
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCC--------cEEEeccCCCcEEEEEECC-----CCCEEEEEECCCeEEEEEC
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPER--------QVVDWNDLHEMVTAACYTP-----DGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--------~~v~~~~~~~~V~sla~sp-----dg~~l~tgs~Dg~I~IwDl 678 (927)
.-.|.. ....|++++.-|+|.|++.... ..+..+.....|++++-.+ ....|++|+ ...+..||+
T Consensus 3 iGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345555 4446888888899999987533 3456677778888887554 234566665 567999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEE
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVD 729 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD 729 (927)
..+.-+... .-...|.++.+-.-+ ..-++..+.+..|.-||
T Consensus 81 ~~N~d~Fyk----------e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 81 ENNSDLFYK----------EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred ccCchhhhh----------hCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 887655432 334567776653211 12355555566666666
No 441
>PLN02153 epithiospecifier protein
Probab=80.21 E-value=1.1e+02 Score=34.45 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=55.0
Q ss_pred CcEEEEEeCC-------CcEEEEeCCCCcEEEEEecC--C-----ceEEEEEccCCCCEEEEEECC-----CcEEEEeCC
Q 002407 578 SQHLLSSSMD-------KTVRLWHLSSKTCLKIFSHS--D-----YVTCIQFNPVDDRYFISGSLD-----AKVRIWSIP 638 (927)
Q Consensus 578 d~~L~Sgs~D-------gtV~lWDl~t~~~~~~~~h~--~-----~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~ 638 (927)
+..++.|+.+ ..+.+||+.+.+-...-... . ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEECC
Confidence 3445555542 35788888876544322111 1 1122222 56777777754 247788987
Q ss_pred CCcEEEeccC-----C-CcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeee
Q 002407 639 ERQVVDWNDL-----H-EMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQ 684 (927)
Q Consensus 639 t~~~v~~~~~-----~-~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~ 684 (927)
+.+-...... + ......+..-++++++.|+.+ ..+.+||+.+.+..
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 7654332211 1 111222223456777777753 24778998877654
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=80.14 E-value=14 Score=42.85 Aligned_cols=135 Identities=15% Similarity=0.206 Sum_probs=81.0
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccC-------CCCEEEEEECCCcEEEEeCCC-CcEEEeccCCC--
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV-------DDRYFISGSLDAKVRIWSIPE-RQVVDWNDLHE-- 650 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~-------dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~~-- 650 (927)
+..+.....++--|++.|+.+........| -++|.|. +...|+ |-.+..|.-.|.+- +..+......+
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehhcc
Confidence 345666677888889999998888855555 6778772 123344 44445555455433 32222222222
Q ss_pred ---cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 651 ---MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 651 ---~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...+..-. ...++++++..|-|++||--.-.....+ .+....|..+....+|. ++++++ ...|.+
T Consensus 561 tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtal---------P~lG~aIk~idvta~Gk-~ilaTC-k~yllL 628 (776)
T COG5167 561 TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTAL---------PGLGDAIKHIDVTANGK-HILATC-KNYLLL 628 (776)
T ss_pred ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcC---------cccccceeeeEeecCCc-EEEEee-cceEEE
Confidence 23333333 3448999999999999996443322221 36667888899999887 444444 345555
Q ss_pred EE
Q 002407 728 VD 729 (927)
Q Consensus 728 wD 729 (927)
-|
T Consensus 629 ~d 630 (776)
T COG5167 629 TD 630 (776)
T ss_pred Ee
Confidence 55
No 443
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.08 E-value=95 Score=34.88 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=21.7
Q ss_pred CcEEEEeCCCCcEEEeccCCC--cEEEEEECCCCCEEEEEECC
Q 002407 630 AKVRIWSIPERQVVDWNDLHE--MVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~--~V~sla~spdg~~l~tgs~D 670 (927)
..+.+||..+.+-........ .....+..-++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 457888887765443322221 11122223467788887753
No 444
>PHA03098 kelch-like protein; Provisional
Probab=78.90 E-value=23 Score=42.53 Aligned_cols=65 Identities=9% Similarity=0.184 Sum_probs=38.4
Q ss_pred CCCEEEEEECCC------cEEEEeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECC-----CeEEEEECCCCeee
Q 002407 619 DDRYFISGSLDA------KVRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQ 684 (927)
Q Consensus 619 dg~~L~sgs~Dg------~I~IWDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~ 684 (927)
++.+++.|+.++ .+..||..+.+........ .....+ .-+++.++.|+.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556666666542 4677888777654433222 122222 2367778888765 34778898877654
Q ss_pred e
Q 002407 685 Q 685 (927)
Q Consensus 685 ~ 685 (927)
.
T Consensus 372 ~ 372 (534)
T PHA03098 372 E 372 (534)
T ss_pred e
Confidence 3
No 445
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.74 E-value=1.2e+02 Score=34.07 Aligned_cols=150 Identities=16% Similarity=0.235 Sum_probs=85.2
Q ss_pred CceEEEEEccCCCCEEEEEECCCc------EEEEeCCC--C---cE-----EEeccCCC--------cEEEEEECCCCCE
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAK------VRIWSIPE--R---QV-----VDWNDLHE--------MVTAACYTPDGQG 663 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~------I~IWDl~t--~---~~-----v~~~~~~~--------~V~sla~spdg~~ 663 (927)
+.+..|.+.| ++..+++.+.+|. +..+++.. + .+ +.+..... ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4567788887 5556666777777 65555543 1 11 11111111 3447788778877
Q ss_pred EEEEECC------CeEEEEECCCCeeeeecccccccc------cccCCCCCeEEEEEcCCCCcEEEEEEC-----CCc--
Q 002407 664 ALVGSYK------GSCHLYNTSENKLQQKSPINLQNK------KKRSHQRKITGFQFAPGSSSEVLVTSA-----DSR-- 724 (927)
Q Consensus 664 l~tgs~D------g~I~IwDl~~~~~~~~~~i~~~~~------~~~~h~~~Vtsl~fspdg~~~Llsgs~-----Dg~-- 724 (927)
+++.-.+ ..|+.++.. ++....+.++.... .........-+|+++|++.. |+++.. |+.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~-l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRT-LFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCE-EEEEECccccCCCccc
Confidence 7776556 678888877 66655543322210 22345677899999999873 444422 221
Q ss_pred -------EEEE--ECCc---ceEEEEeec-------CCcceEEEEEecCCCEEEE
Q 002407 725 -------IRVV--DGID---LVHKFKGFR-------NTNSQISASLTANGRYVVS 760 (927)
Q Consensus 725 -------I~Vw--D~~~---~~~~~~~~~-------~~~~v~sv~fspdg~~Las 760 (927)
++|+ |... ....+.... ....+..+.+-+++++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4554 4322 122222222 3456777888888887664
No 446
>PLN02193 nitrile-specifier protein
Probab=77.57 E-value=1.6e+02 Score=34.91 Aligned_cols=105 Identities=10% Similarity=0.045 Sum_probs=54.2
Q ss_pred CcEEEEEeCC-------CcEEEEeCCCCcEEEEEec---CC--ce-EEEEEccCCCCEEEEEECCC-----cEEEEeCCC
Q 002407 578 SQHLLSSSMD-------KTVRLWHLSSKTCLKIFSH---SD--YV-TCIQFNPVDDRYFISGSLDA-----KVRIWSIPE 639 (927)
Q Consensus 578 d~~L~Sgs~D-------gtV~lWDl~t~~~~~~~~h---~~--~V-~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t 639 (927)
+..++.|+.+ ..+.+||+.+.+-...-.. .. .. .+++.. ++.+++.|+.++ .+..||+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCC
Confidence 3445555542 3477888887654432111 01 11 112222 566777777653 478889887
Q ss_pred CcEEEeccC---C-CcEEEEEECCCCCEEEEEECCC-----eEEEEECCCCeee
Q 002407 640 RQVVDWNDL---H-EMVTAACYTPDGQGALVGSYKG-----SCHLYNTSENKLQ 684 (927)
Q Consensus 640 ~~~v~~~~~---~-~~V~sla~spdg~~l~tgs~Dg-----~I~IwDl~~~~~~ 684 (927)
.+-...... + ......+..-++++++.|+.++ .+..||+.+.+..
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 654433221 1 1111111223566777776543 4678888876654
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.44 E-value=11 Score=39.95 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=47.9
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc------cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK------RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~------~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
+..++.+|++-+.+|.+++||+.+++...... .+...-. ......|..+.+..+|. .++.-.+|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEeCCCEEEec
Confidence 44578899999999999999999988765541 1110000 04556788888887774 34444567788887
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=77.20 E-value=1e+02 Score=32.42 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=40.7
Q ss_pred CEEEEEECCCcEEEEeCCC--CcEEEeccCCCcEEEEEECCCCCEEEEEECC------CeEEEE
Q 002407 621 RYFISGSLDAKVRIWSIPE--RQVVDWNDLHEMVTAACYTPDGQGALVGSYK------GSCHLY 676 (927)
Q Consensus 621 ~~L~sgs~Dg~I~IWDl~t--~~~v~~~~~~~~V~sla~spdg~~l~tgs~D------g~I~Iw 676 (927)
+.|+.+.....|.+|++.+ .++...+..-+.|..+.++..|++|++--.+ ..+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 4454446667899999983 4455666667899999999999999995332 256665
No 449
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=77.18 E-value=1.7e+02 Score=37.51 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=101.5
Q ss_pred cEEEEeCCCCcEEEEEecCC-----ceEEEEEccCCCC-EEEEEEC-----------CCcEEEEeC-CCCcE---EEecc
Q 002407 589 TVRLWHLSSKTCLKIFSHSD-----YVTCIQFNPVDDR-YFISGSL-----------DAKVRIWSI-PERQV---VDWND 647 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~h~~-----~V~~v~fsp~dg~-~L~sgs~-----------Dg~I~IWDl-~t~~~---v~~~~ 647 (927)
.|+++|..+++.+..+.+.. .|..+.|+..+.. +++++.. +|.++.|++ ..++. +....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 37888888888777766433 4667777763333 3333322 344666664 23442 23333
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
....+.++ .|-..++++| ....+++||+...+++..... +.....|+.+++.-. .+++|...-.+.+
T Consensus 934 ~~~~v~Ai--~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~-------k~~p~~Is~iqt~~~---RI~VgD~qeSV~~ 1000 (1205)
T KOG1898|consen 934 IPGPVGAI--CPFQGRVLAG-VGRFLRLYDLGKKKLLRKCEL-------KFIPNRISSIQTYGA---RIVVGDIQESVHF 1000 (1205)
T ss_pred CCccceEE--eccCCEEEEe-cccEEEEeeCChHHHHhhhhh-------ccCceEEEEEeecce---EEEEeeccceEEE
Confidence 34555444 5655566555 467899999988877766542 234567888887653 6777766666655
Q ss_pred E--EC-CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 728 V--DG-IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 728 w--D~-~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+ +. .+....+....-...++.+.+ -|...+|.+..=|++.+-.+..
T Consensus 1001 ~~y~~~~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1001 VRYRREDNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EEEecCCCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECCC
Confidence 4 32 233344443333444555544 3455688888888888877754
No 450
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=76.34 E-value=1.2e+02 Score=33.84 Aligned_cols=106 Identities=11% Similarity=0.159 Sum_probs=56.2
Q ss_pred CcEEEEEeCC-----CcEEEEeCCCCcEE---EEEe---cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCc
Q 002407 578 SQHLLSSSMD-----KTVRLWHLSSKTCL---KIFS---HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQ 641 (927)
Q Consensus 578 d~~L~Sgs~D-----gtV~lWDl~t~~~~---~~~~---h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~ 641 (927)
+..++.|+.+ ..+..+|+.+.+.. ..+. ....-.+++.. ++++++.|+.. ..+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 3455566543 34667777665531 2221 11111222222 56777777642 358888988766
Q ss_pred EEEeccCC--CcEEEEEECCCCCEEEEEECCC----eEEEEECCCCeeee
Q 002407 642 VVDWNDLH--EMVTAACYTPDGQGALVGSYKG----SCHLYNTSENKLQQ 685 (927)
Q Consensus 642 ~v~~~~~~--~~V~sla~spdg~~l~tgs~Dg----~I~IwDl~~~~~~~ 685 (927)
-....... ......+...++++++.|+.++ .+.+||+.+.+...
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 44432221 1222233344677888887654 35688988876543
No 451
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.92 E-value=39 Score=38.02 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=58.0
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC---CCcEEEEEECC-----
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG---SSSEVLVTSAD----- 722 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd---g~~~Llsgs~D----- 722 (927)
..+.|+|.|||.+|+ +...|.|++++ ..+....... ... ............++++|+ +..+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~-~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVA-DLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEE-E-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceec-ccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 468899999987665 46699999999 4444311110 000 112345567899999995 23233333321
Q ss_pred -C--cEEEEE--CC-----cceEEEEee----cCCcceEEEEEecCCCEEEEEECCC
Q 002407 723 -S--RIRVVD--GI-----DLVHKFKGF----RNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 723 -g--~I~VwD--~~-----~~~~~~~~~----~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
. .|.-|. .. .....+... ........+.|.|||.+.++.+..+
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 1 232232 11 111222221 1234456799999998777766543
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.72 E-value=0.39 Score=54.79 Aligned_cols=145 Identities=11% Similarity=0.201 Sum_probs=98.3
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccC
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDL 648 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~ 648 (927)
....|-+. +.++.++.+..|..||-. ++.......+.....++|....+..++.+-..+.+.+||+.+....+. ...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 34556665 558888889999999854 444444446666777888873334455666778999999977532221 111
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
...-.-+.|++.+..++.+...|.+.||+..+.+..... -.|..+++++++.+.+ +.+.++.|..+.+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~---------Gkh~RRgtq~av~lEd--~vil~dcd~~L~v 184 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM---------GKHQRRGTQIAVTLED--YVILCDCDNTLSV 184 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhh---------cccccceeEEEecccc--eeeecCcHHHHHH
Confidence 112222789999999999999999999998876654432 1388999999999976 4666665544433
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=74.94 E-value=1.1e+02 Score=31.99 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=68.1
Q ss_pred cCCcEEEEEeCCCcEEEEeCC--CCcEEEEEecCCceEEEEEccCCCCEEEEEECCC------cEEEE-eCCCC----cE
Q 002407 576 SKSQHLLSSSMDKTVRLWHLS--SKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA------KVRIW-SIPER----QV 642 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~--t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg------~I~IW-Dl~t~----~~ 642 (927)
...+.|+.+...+.|.+|++. ..+.+..|..-+.|..+.++. .|+||++--.+. .+|+| +++.. +.
T Consensus 26 ~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 26 GGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred cCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 343455555677789999988 345667777779999999999 899999964432 46665 33221 11
Q ss_pred --EEe---------------------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee
Q 002407 643 --VDW---------------------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL 683 (927)
Q Consensus 643 --v~~---------------------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~ 683 (927)
+.. ......+.+++..|-..-|++|+ ++.+.||.+.....
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 111 12234667777777544566665 56788888765443
No 454
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=74.06 E-value=1.6e+02 Score=33.38 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=72.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEecC---CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC--c
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS---DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE--M 651 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~---~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~--~ 651 (927)
-++.++.+..+|.|.-.|..++..+...... ..+..-.+.. +++ |+.++.++.+..+|..+++.+-...... .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3577888888998998999988876544433 2333333333 454 7788889989999998888776555554 1
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
+....+-.++ .+..++.++.+...|..++.......
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe
Confidence 2222222333 34444478999999999888766644
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.44 E-value=27 Score=45.11 Aligned_cols=166 Identities=13% Similarity=0.177 Sum_probs=89.3
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEEeccCCCcEEEEEE--------CCCCCEEEEEECCCeEEEE
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVDWNDLHEMVTAACY--------TPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~~~~~~~~V~sla~--------spdg~~l~tgs~Dg~I~Iw 676 (927)
|...-+.+-+-|.=++.-+ +.|..+.+|+..++. +...-+....|..|.+ .|.=+++++-..--.|.|+
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 4333444555552333333 357889999998844 3333333444544433 3333455544445556665
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE--E------CCc-------------ceE
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV--D------GID-------------LVH 735 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw--D------~~~-------------~~~ 735 (927)
-+.-........+-....+.......|+++....+|+ ++.++.||.|+=. . ... ++.
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvP 232 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVP 232 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhh
Confidence 4432221111111000011123456788998777664 6666677743321 1 010 011
Q ss_pred -EEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 736 -KFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 736 -~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.++.. .+..+|..+.+...-..|.+-++.|.|.+|++...
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 11111 34557888999888889999999999999999873
No 456
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.07 E-value=1.1e+02 Score=36.20 Aligned_cols=116 Identities=13% Similarity=0.114 Sum_probs=63.6
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC---C--cEEEEEE-
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS---S--SEVLVTS- 720 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg---~--~~Llsgs- 720 (927)
..-...+.|+|.|||.+|++--..|.|++++..++.......+. .............|+|+|+- . .+|.+..
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~--~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLP--EIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCC--ceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 33456789999999987766655799999987655432221111 00001135778999999874 1 1333332
Q ss_pred C---------CCcEEEEECC-------cceEEEEeec--CCcceEEEEEecCCCEEEEEECC
Q 002407 721 A---------DSRIRVVDGI-------DLVHKFKGFR--NTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 721 ~---------Dg~I~VwD~~-------~~~~~~~~~~--~~~~v~sv~fspdg~~Lasgs~D 764 (927)
. ...|.-|... .....+.... ....-..+.|.|||++.++.++.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1 2234334321 1122232221 11223467899999877766654
No 457
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.86 E-value=2.4e+02 Score=36.84 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=49.4
Q ss_pred EEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 562 SFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
.+.-|..++.+..+.....++.+..-+.+-+|+.........+.- ......+ ++..++++..||.+..||...++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 193 GLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLP----NGQLESR-DGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred cccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhccc----ccccCcc-CCceEEEEEecCCEEeeecCCCc
Confidence 333455566666655544555666667777777655444333321 1111155 89999999999999999999987
Q ss_pred EE
Q 002407 642 VV 643 (927)
Q Consensus 642 ~v 643 (927)
.+
T Consensus 268 ~~ 269 (993)
T KOG1983|consen 268 LQ 269 (993)
T ss_pred ee
Confidence 63
No 458
>PRK10115 protease 2; Provisional
Probab=72.82 E-value=2.5e+02 Score=35.02 Aligned_cols=190 Identities=8% Similarity=0.002 Sum_probs=94.9
Q ss_pred CEEEEEecCCcE-EEEE-eCC----CcEEEEeCCCCcEEE-EEecCCceEEEEEccCCCCEEEEEECC------CcEEEE
Q 002407 569 DVLDLSWSKSQH-LLSS-SMD----KTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIW 635 (927)
Q Consensus 569 ~V~~l~~spd~~-L~Sg-s~D----gtV~lWDl~t~~~~~-~~~h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IW 635 (927)
.+..+.|+|++. |+.+ ..+ -.|++.|+.++..+. .+.... ..++|.+ +++.|+....+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEE
Confidence 356778899844 4433 222 358999998886432 222222 4599999 77666555432 357888
Q ss_pred eCCCC--cEEEecc-CCCcEE-EEEECCCCCEEEEEECC---CeEEEEECCC--CeeeeecccccccccccCCCCCeEEE
Q 002407 636 SIPER--QVVDWND-LHEMVT-AACYTPDGQGALVGSYK---GSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 636 Dl~t~--~~v~~~~-~~~~V~-sla~spdg~~l~tgs~D---g~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
++.++ +-...+. ...... .+..+.+++++++.+.. +.+.+|+... +....... ........+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~ 275 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP---------RRKDHEYSL 275 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE---------CCCCCEEEE
Confidence 88877 3222222 222233 33445588887765543 4688888532 22111110 111222222
Q ss_pred EEcCCCCcEEEEEECC-CcEEEE--ECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 707 QFAPGSSSEVLVTSAD-SRIRVV--DGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 707 ~fspdg~~~Llsgs~D-g~I~Vw--D~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
. +.. ..+++....+ ...+|+ +.... ...+........+..+.+. .+.++++...+|.-+++-+.
T Consensus 276 ~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 276 D-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred E-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 2 222 3233333322 233333 33211 1222222223456677776 33566666777776666554
No 459
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=70.57 E-value=1.8e+02 Score=32.40 Aligned_cols=108 Identities=10% Similarity=0.080 Sum_probs=73.0
Q ss_pred EEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-
Q 002407 592 LWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK- 670 (927)
Q Consensus 592 lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D- 670 (927)
++|+.+++.+..= -....+-.|+ ++++.++-+..|.|..+|..+|+.......++....++|. |.++++|-..
T Consensus 189 vidv~s~evl~~G--LsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~ 262 (335)
T TIGR03032 189 VIDIPSGEVVASG--LSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKL 262 (335)
T ss_pred EEEeCCCCEEEcC--ccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccc
Confidence 4677766654321 1112233455 6888888888899999999888877777777888889998 8888876432
Q ss_pred -------------------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 671 -------------------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 671 -------------------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
.-|.+.|++++..+..+.+ .+.-..+..++..|.-
T Consensus 263 R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~f-------eg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 263 RESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRF-------EGVIEEIYDVAVLPGV 316 (335)
T ss_pred cCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEe-------CCceeEEEEEEEecCC
Confidence 2266778888877766554 2445567777777753
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=68.76 E-value=14 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.2
Q ss_pred CceEEEEEccCCC--CEEEEEECCCcEEEEeCCC
Q 002407 608 DYVTCIQFNPVDD--RYFISGSLDAKVRIWSIPE 639 (927)
Q Consensus 608 ~~V~~v~fsp~dg--~~L~sgs~Dg~I~IWDl~t 639 (927)
+.|.++.|+|..+ ++|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998455 6888887889999999985
No 461
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=52 Score=38.59 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=53.6
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEE---------CCCCeeee---ecccccccccccCCCCCeEEEEEcCCC--CcE
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYN---------TSENKLQQ---KSPINLQNKKKRSHQRKITGFQFAPGS--SSE 715 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwD---------l~~~~~~~---~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~ 715 (927)
-.|..+..++.|..++..+.+|.+.++= +.+++... ++.+..+... ....-.+..++|+|+. ...
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft-ss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT-SSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec-cCCceeeeeccccCCccCCce
Confidence 3577888999999999999999877654 12332211 1111111000 1222346677899987 668
Q ss_pred EEEEECCCcEEEEECCcc
Q 002407 716 VLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~ 733 (927)
|++-+.|..|||||....
T Consensus 183 L~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEEecCcEEEEEecCCc
Confidence 999999999999995443
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=66.75 E-value=2e+02 Score=35.37 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=30.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE 489 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~ 489 (927)
.....+++|.-+|.|+-++.+..||.|++|++....
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 345567888889999999999999999999987544
No 463
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.15 E-value=1.7e+02 Score=30.61 Aligned_cols=114 Identities=9% Similarity=0.003 Sum_probs=68.6
Q ss_pred EEecCCcEEEEEeC--CCcEEEEeCCCCcEEEEEecC-CceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEEeccC
Q 002407 573 LSWSKSQHLLSSSM--DKTVRLWHLSSKTCLKIFSHS-DYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDL 648 (927)
Q Consensus 573 l~~spd~~L~Sgs~--DgtV~lWDl~t~~~~~~~~h~-~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~~~~~ 648 (927)
+.+..+..+.+.+. ...|++||+.+++.+...... ..+..=-... -++++ .-.-.+|.-.++|.++-+.+..+..
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-LGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 33333344555554 346999999999887655422 1221111111 12222 2234577888999998888777666
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
++.-+.++. |++.|+.+....++++-|..+.......++
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~V 168 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQV 168 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEE
Confidence 666666654 566677777677788888877665555444
No 464
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.93 E-value=49 Score=40.15 Aligned_cols=71 Identities=13% Similarity=0.252 Sum_probs=51.6
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
.....+++|+-+| .+.-++.+..||.|++|+......-.......+...+.|...| |++.+.|..+.-|.-
T Consensus 12 k~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence 3456688899999 9999999999999999998766543333334444556666554 677777888888854
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.65 E-value=65 Score=34.58 Aligned_cols=140 Identities=9% Similarity=0.090 Sum_probs=73.9
Q ss_pred EEEEeCCCCcEEEeccC-CCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 632 VRIWSIPERQVVDWNDL-HEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~-~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
-.+||+.+++.....-. .-....-.+-+||++|.+|+.. ..+++|+........... ...........--.+.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~---e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWT---ESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCce---ECcccccCCCccccce
Confidence 44889988876543322 2233444677999999998762 348888865411000000 0000012223344556
Q ss_pred EcCCCCcEEEEEECC-CcEEEEECCc---ceEEEEee------cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 708 FAPGSSSEVLVTSAD-SRIRVVDGID---LVHKFKGF------RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 708 fspdg~~~Llsgs~D-g~I~VwD~~~---~~~~~~~~------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
..|+|+ +|++|+.. ....+|.... ....+... .....-.-+.+.|+|++++.+..+. .|||..+...
T Consensus 125 ~L~DG~-vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 125 TLPDGR-VLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred ECCCCC-EEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 678887 66666555 3455555311 11111111 1111222456779999999987654 4667776643
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=65.47 E-value=4e+02 Score=34.38 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCC------CEEEEEeCCCcEEEEecCcCccccee
Q 002407 456 NGSIWSIKFSLDG------RYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 456 ~~~I~~vafSpdG------~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
...|.|+++.++. ++|+.|+.|+++++..+.....+..+
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l 626 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL 626 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence 4678899998875 58999999999999999855544443
No 467
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=65.14 E-value=2.6e+02 Score=32.15 Aligned_cols=152 Identities=12% Similarity=0.134 Sum_probs=83.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEEC----CCCCE--EEEEEC-C---CeEEEEECC--CCeeeee
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT----PDGQG--ALVGSY-K---GSCHLYNTS--ENKLQQK 686 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~s----pdg~~--l~tgs~-D---g~I~IwDl~--~~~~~~~ 686 (927)
...+|+....++-+.+||+...++.... .+.++.+..- -.|+. |++++. + ..|++|.+. ++.+...
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4567888888888999999876654442 2334433332 13443 444443 2 469999775 3443322
Q ss_pred cccccccccccCCCCCeEEEEEc--C-CCCcEEEEEECCCcEEEEEC---Ccc---eEEEEeecCCcceEEEEEecCCCE
Q 002407 687 SPINLQNKKKRSHQRKITGFQFA--P-GSSSEVLVTSADSRIRVVDG---IDL---VHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fs--p-dg~~~Llsgs~Dg~I~VwD~---~~~---~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
..... ........++.+|+. + ++..++++...+|.+..|-+ ... ....+.+.....+-.|.......+
T Consensus 145 ~~~~~---p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 145 TDPAA---PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp CBTTC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred CCCCc---ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence 11000 001223457788864 3 35567778889998877752 111 122233333456778888888889
Q ss_pred EEEEECCCcEEEEECCCC
Q 002407 758 VVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~ 775 (927)
|..+-++--|.-|+.+..
T Consensus 222 LYvgEE~~GIW~y~Aep~ 239 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPE 239 (381)
T ss_dssp EEEEETTTEEEEEESSCC
T ss_pred EEEecCccEEEEEecCCC
Confidence 999988876666666543
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.34 E-value=78 Score=41.17 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=23.3
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 752 TANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 752 spdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+.++..++++..||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 67899999999999999999998643
No 469
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=64.06 E-value=55 Score=40.44 Aligned_cols=100 Identities=9% Similarity=0.104 Sum_probs=70.2
Q ss_pred CcEEEEEeCCCcEEEEeCCC-------C-------------cEEEEEecCCceEEEEEc--cCCCCEEEEEECCCcEEEE
Q 002407 578 SQHLLSSSMDKTVRLWHLSS-------K-------------TCLKIFSHSDYVTCIQFN--PVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t-------~-------------~~~~~~~h~~~V~~v~fs--p~dg~~L~sgs~Dg~I~IW 635 (927)
...|+.+..||.|.+|.+++ . ++...+.....++.++++ . ..++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK-KSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC-cceEEEEecCCceEEEE
Confidence 36799999999999996531 0 122233456789999998 6 67788888888888887
Q ss_pred eCCC--CcEE--EeccCCCcEEEEEECCCC---C---EEEEEECCCeEEEEEC
Q 002407 636 SIPE--RQVV--DWNDLHEMVTAACYTPDG---Q---GALVGSYKGSCHLYNT 678 (927)
Q Consensus 636 Dl~t--~~~v--~~~~~~~~V~sla~spdg---~---~l~tgs~Dg~I~IwDl 678 (927)
-... .+.. ....+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6543 2211 122355678899997743 2 7788899999998887
No 470
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=64.03 E-value=3.9e+02 Score=33.85 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=99.4
Q ss_pred cCCCCEEEEEec---CC----cEEEEEeCCCcEEEEeCC------C---------CcEEEEEe----cCCceEEEEEccC
Q 002407 565 GHLDDVLDLSWS---KS----QHLLSSSMDKTVRLWHLS------S---------KTCLKIFS----HSDYVTCIQFNPV 618 (927)
Q Consensus 565 gH~~~V~~l~~s---pd----~~L~Sgs~DgtV~lWDl~------t---------~~~~~~~~----h~~~V~~v~fsp~ 618 (927)
.-..+|..|+|. .. ..++..-....+.|+... . ..++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788888887 21 235555666667777621 1 12333343 3357789999998
Q ss_pred CCCEEEEEECCCcEEEEeCCCC------cEEE-------e-cc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 619 DDRYFISGSLDAKVRIWSIPER------QVVD-------W-ND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~------~~v~-------~-~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+...|+.....|...||++... .... + .+ .......+.|.++-..|++.+ ...+.++|+.+..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 8889999999999999999221 1110 1 11 113445788988888888775 4568899998776
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
....+. .......|..+.-+|....++++-.. ..|...+...
T Consensus 236 ~~~~l~-------~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLV-------TAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred ccchhc-------cCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 533211 12455678999988874444443322 5566666444
No 471
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=62.52 E-value=1.3e+02 Score=35.52 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE------e-c-cCCCcEEEEEECCCC
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD------W-N-DLHEMVTAACYTPDG 661 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~------~-~-~~~~~V~sla~spdg 661 (927)
-...+.|+|.| ++++|++--..|.|++++..++.... . . ..+.....|+++|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 35578899999 88877766556999999865543211 1 1 135678999999874
No 472
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.24 E-value=1.5e+02 Score=34.36 Aligned_cols=31 Identities=13% Similarity=0.360 Sum_probs=25.0
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
..+..++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488888888889999999999999999985
No 473
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=60.68 E-value=60 Score=34.86 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=52.7
Q ss_pred EEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-C--CcEEEEeCCC----CcEEE---eccCCCcEEEEEECC
Q 002407 591 RLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-D--AKVRIWSIPE----RQVVD---WNDLHEMVTAACYTP 659 (927)
Q Consensus 591 ~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~-D--g~I~IWDl~t----~~~v~---~~~~~~~V~sla~sp 659 (927)
.+||+.+++...... ..-.+..-.|.| +|++|++|+. + ..+++++... ..... ......+-..+..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 578888776543222 333344456778 9999998875 2 3488887544 11111 123334556677788
Q ss_pred CCCEEEEEECCCe-EEEEEC
Q 002407 660 DGQGALVGSYKGS-CHLYNT 678 (927)
Q Consensus 660 dg~~l~tgs~Dg~-I~IwDl 678 (927)
||+.|++|+.... ..+|..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCCEEEEeCcCCCcccccCC
Confidence 9999999988743 444443
No 474
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.14 E-value=77 Score=36.66 Aligned_cols=137 Identities=12% Similarity=0.164 Sum_probs=80.9
Q ss_pred EEecCCcEEEEEeCCCcEEEEeCCCCc--EEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--ec
Q 002407 573 LSWSKSQHLLSSSMDKTVRLWHLSSKT--CLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WN 646 (927)
Q Consensus 573 l~~spd~~L~Sgs~DgtV~lWDl~t~~--~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~ 646 (927)
+-|...++++.+...|.+.=|-+.... ..-.+. ..++|.+|.|++ |.+.|++--.+..|.+++....+... ..
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 333333444444445555555544221 112222 567999999999 99999999999999999874332221 11
Q ss_pred c---CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 647 D---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 647 ~---~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
. ....|...+|+... -++.-...| +.+|.....+..... .+.+...|.-..|.++..-.|++++
T Consensus 107 ~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pekrslRl--------Vks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPEKRSLRL--------VKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchhhhhhhh--------hhhcccCccEEEEccccceEeeecc
Confidence 1 22458888998763 455544444 555544332211111 1467778888899998765555555
No 475
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=59.85 E-value=3.7e+02 Score=33.15 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEec--CcCcccceeecccccCccccEEEEccC----CCCCeeccc-ccCCcee
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEKQEDGHLNMLLLANGS----PEPTSLSPK-HLDNHLE 528 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv--~~~~~~~~l~~~~~~~~~~~v~~v~~s----pd~~~la~~-~~~~~i~ 528 (927)
.+.|..|.|.++++.++..-..|.|.+|++ ...+...++............+.-.+. .+..++++. .......
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred eecccccccccccccCcccccceEeec--CCCceEEEc---cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQ---GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~l~---gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
+++.+ ....+..+. -+........|+-+ |.|.-- .+++|.+|.+...+..+
T Consensus 209 ----------------------kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 209 ----------------------KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQK 265 (670)
T ss_pred ----------------------EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEE
Q ss_pred EEecCCceEEE-----EEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc----CCCcEEEEEE------CCCCCEEEEE
Q 002407 603 IFSHSDYVTCI-----QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND----LHEMVTAACY------TPDGQGALVG 667 (927)
Q Consensus 603 ~~~h~~~V~~v-----~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~----~~~~V~sla~------spdg~~l~tg 667 (927)
++.-..-|..- .+.|...++++-+. +.+|++.|+.-..++.... ....+.--++ +.+.+.+|.+
T Consensus 266 tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~-~nkIyLld~~~~siLse~~~s~~~~~qll~~~vv~vkG~s~nt~T~a~~ 344 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKPPSPNRVLLSV-NNKIYLLDLKFESILSEFELSHPKPFQLLLSQVVPVKGNSQNTKTFALY 344 (670)
T ss_pred EEEechhhccccccceEeecCCCCeEEEEc-CCEEEEEeehhhhhhhhhhccCCccceeeeeeeeeccccccCceEEEEE
No 476
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=59.65 E-value=4.6e+02 Score=33.22 Aligned_cols=120 Identities=8% Similarity=0.117 Sum_probs=76.8
Q ss_pred CCceEEEccC---CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCc-----EEEEE-ecCC----------ceEEEEE
Q 002407 557 DKPICSFQGH---LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKT-----CLKIF-SHSD----------YVTCIQF 615 (927)
Q Consensus 557 ~k~i~~l~gH---~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~-----~~~~~-~h~~----------~V~~v~f 615 (927)
..++..+..+ ..+..+++|+|. +.||.....|...||++.... .+... .+.+ .-..|.|
T Consensus 132 ~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W 211 (765)
T PF10214_consen 132 PNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILW 211 (765)
T ss_pred cceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEe
Confidence 3455555432 236778999986 789999999999999992111 11111 1122 2347788
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCC
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~ 680 (927)
.+ +.+.|+.+.. ..+.++|+.+..... .......|..+.-+|. +..|+.. ...|...++..
T Consensus 212 ~~-~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VS-DSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred cC-CCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 77 6667777654 568899998876533 3334468888888887 3333332 35677777776
No 477
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=59.23 E-value=4.7e+02 Score=33.13 Aligned_cols=197 Identities=13% Similarity=0.133 Sum_probs=103.4
Q ss_pred EEEEEECCCcEEEEeC-CCCcEEEec--------cCCCcEEEEEEC--CCCCEEEEEECC---CeEEEEECCCCee----
Q 002407 622 YFISGSLDAKVRIWSI-PERQVVDWN--------DLHEMVTAACYT--PDGQGALVGSYK---GSCHLYNTSENKL---- 683 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl-~t~~~v~~~--------~~~~~V~sla~s--pdg~~l~tgs~D---g~I~IwDl~~~~~---- 683 (927)
-+++....|.|++|-. .+.+..... .....++..++. .+|+.+++++.+ +.|++|.+.-.--
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 3566677899999977 333322211 133456655554 677666666665 7788875431100
Q ss_pred ------eeeccccccc-c--ccc-----------CCCCCeEEEEEcC-----C-CCcEEEEEEC----CCcEEEEECCcc
Q 002407 684 ------QQKSPINLQN-K--KKR-----------SHQRKITGFQFAP-----G-SSSEVLVTSA----DSRIRVVDGIDL 733 (927)
Q Consensus 684 ------~~~~~i~~~~-~--~~~-----------~h~~~Vtsl~fsp-----d-g~~~Llsgs~----Dg~I~VwD~~~~ 733 (927)
...+.+.... . ... .....++.+.|.+ + .+..+++.+. ...|.-|...+.
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~ 223 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREE 223 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEcc
Confidence 0111110000 0 000 1224677777776 1 2334444432 346888872211
Q ss_pred --------------------------eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccc----cc
Q 002407 734 --------------------------VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRS----KS 783 (927)
Q Consensus 734 --------------------------~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~----~~ 783 (927)
............|.+++...-+.+|+.+-.||+|.++|-.+.+..... ..
T Consensus 224 ~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~ 303 (753)
T PF11635_consen 224 QQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP 303 (753)
T ss_pred CcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence 011111122355667777777889999999999999999886544333 11
Q ss_pred cc----eeeeeeeecC--CCeEEEEecCCceeEEeecCCce
Q 002407 784 IT----VTHSYEHFHC--QDVSVAIPWPGVGDTWGLQDTYL 818 (927)
Q Consensus 784 ~~----~~~~~~~~~~--~~v~vavs~~g~~~i~~~~d~~i 818 (927)
.. .......|.+ ....++++|.+...+.-..++..
T Consensus 304 ~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~ 344 (753)
T PF11635_consen 304 PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKT 344 (753)
T ss_pred ccccccccccccccccCCCCceEEECcccceEEEEecCCCc
Confidence 11 1111112211 23467889988887776665553
No 478
>PLN02153 epithiospecifier protein
Probab=58.56 E-value=3e+02 Score=30.77 Aligned_cols=93 Identities=9% Similarity=0.164 Sum_probs=48.4
Q ss_pred cEEEEeCCCCcEEEEEec-----C--CceEEEEEccCCCCEEEEEECC-----------CcEEEEeCCCCcEEEeccCC-
Q 002407 589 TVRLWHLSSKTCLKIFSH-----S--DYVTCIQFNPVDDRYFISGSLD-----------AKVRIWSIPERQVVDWNDLH- 649 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~h-----~--~~V~~v~fsp~dg~~L~sgs~D-----------g~I~IWDl~t~~~v~~~~~~- 649 (927)
.|.+||+.+.+-...-.. . ..-.+++.. ++++++.|+.+ ..|.+||..+.+-.......
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~ 179 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGE 179 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCC
Confidence 577888877654332111 1 111222222 56777777754 24778888776544322111
Q ss_pred -----CcEEEEEECCCCCEEEEEECC-------------CeEEEEECCCCeeee
Q 002407 650 -----EMVTAACYTPDGQGALVGSYK-------------GSCHLYNTSENKLQQ 685 (927)
Q Consensus 650 -----~~V~sla~spdg~~l~tgs~D-------------g~I~IwDl~~~~~~~ 685 (927)
.....+. -+++.+++|+.+ ..+.+||+.+.+...
T Consensus 180 ~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 180 NFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTE 231 (341)
T ss_pred CCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEe
Confidence 1111222 356666665432 458889988776543
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.31 E-value=4e+02 Score=31.72 Aligned_cols=34 Identities=29% Similarity=0.499 Sum_probs=26.9
Q ss_pred CEEEEEecCC----cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 569 DVLDLSWSKS----QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 569 ~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
.+...+|+|+ ..|+.-+.|.+||+||+.....+.
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 3566789986 568888999999999998765553
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=56.73 E-value=2e+02 Score=31.62 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=60.3
Q ss_pred cEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEE------CCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 631 KVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGS------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
.|++||..+.+-...- ...+.|+.+.|..+.+.++.|. ....+..||+.+........- ....-..+|
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~-----~s~~ipgpv 91 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG-----SSNSIPGPV 91 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCc-----ccccCCCcE
Confidence 4999998887655432 3457899999987777777764 345688999988764332110 001234678
Q ss_pred EEEEEcCCC-CcEEEEEE-C--CCcEEEEECCcce
Q 002407 704 TGFQFAPGS-SSEVLVTS-A--DSRIRVVDGIDLV 734 (927)
Q Consensus 704 tsl~fspdg-~~~Llsgs-~--Dg~I~VwD~~~~~ 734 (927)
+.+.+.... ..+.++|. . +..|..||..+..
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 888875433 33444443 2 3446778754433
No 481
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=56.13 E-value=6.2e+02 Score=33.60 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=38.2
Q ss_pred ccCCCCEEEEEecCC----cE----EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE-EE---ccCCCCEEEEEECCCc
Q 002407 564 QGHLDDVLDLSWSKS----QH----LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCI-QF---NPVDDRYFISGSLDAK 631 (927)
Q Consensus 564 ~gH~~~V~~l~~spd----~~----L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v-~f---sp~dg~~L~sgs~Dg~ 631 (927)
.||..+|.|....-. .+ -++.+.||.+.|=|..- ++.+...+.|..| .. .|...-+|+..-.||+
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy---IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgt 420 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY---IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGT 420 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh---eeeecCCCceEEEEEecCCCccceeEEEecCcCce
Confidence 467777777665421 12 24567788888877542 1111111222111 11 1111223444445666
Q ss_pred EEEEeCCCCcEEEec
Q 002407 632 VRIWSIPERQVVDWN 646 (927)
Q Consensus 632 I~IWDl~t~~~v~~~ 646 (927)
+.|-|..+.++....
T Consensus 421 lyvSdp~s~qv~rv~ 435 (1899)
T KOG4659|consen 421 LYVSDPLSKQVWRVS 435 (1899)
T ss_pred EEecCCCcceEEEec
Confidence 666666666555443
No 482
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=55.30 E-value=4.1e+02 Score=33.22 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=57.7
Q ss_pred EEEEEECCCCCEEEEEECCC-----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 652 VTAACYTPDGQGALVGSYKG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
-..++|-|.|..+++-..|| .|.++..+.-+. ..+.+ ..+....+..++|.-.. -+++....+.|.
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~l------r~~~dEk~~~~~wn~~s--~vlav~~~n~~~ 319 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDL------RVGCDEKAFLENWNLLS--TVLAVAEGNLLK 319 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccc------cCCchhhhhhhhhhHHH--HHHHHhhcceEE
Confidence 34589999999999977554 355555432211 11111 02334456666776543 345556778899
Q ss_pred EEECCcceEEEEeecCCcceEEEEEecCCC
Q 002407 727 VVDGIDLVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 727 VwD~~~~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
+|-..+.-.-++.......+.-+.|+|...
T Consensus 320 lwttkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 320 LWTTKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEccceEEEEEEeecCCCcceeeeccccC
Confidence 999776655555544445566788998654
No 483
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=54.31 E-value=3.4e+02 Score=30.05 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=35.9
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCCcE----EEeccCCCcE--EEEEECCCCCEEEEEEC-----CCeEEEEECCCCe
Q 002407 619 DDRYFISGSLDA-----KVRIWSIPERQV----VDWNDLHEMV--TAACYTPDGQGALVGSY-----KGSCHLYNTSENK 682 (927)
Q Consensus 619 dg~~L~sgs~Dg-----~I~IWDl~t~~~----v~~~~~~~~V--~sla~spdg~~l~tgs~-----Dg~I~IwDl~~~~ 682 (927)
++.+++.|+.++ .+..||+.+.+. ......+... .+++. -+++.++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 566777777643 466777766553 1111222111 12222 35667777764 2458889988766
Q ss_pred eee
Q 002407 683 LQQ 685 (927)
Q Consensus 683 ~~~ 685 (927)
...
T Consensus 151 W~~ 153 (323)
T TIGR03548 151 WFE 153 (323)
T ss_pred eeE
Confidence 543
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=53.62 E-value=42 Score=24.43 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=20.9
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGE-D--CVIHVW 483 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~-D--gtVrVW 483 (927)
.-..+......|||||++|+-++. + |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345667888999999998876653 4 565555
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=53.08 E-value=2.4 Score=48.73 Aligned_cols=114 Identities=10% Similarity=0.119 Sum_probs=79.8
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
....|.|.+.-+++++.+..+..||-........ ..+.....++|..+++..++.+-..+.+.+||...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~-----------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL-----------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceeccc-----------CCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 3456778887899999999999999765433321 34455667888888887778888899999999543
Q ss_pred c-eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 733 L-VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 733 ~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
. .+.+..- ....-.-+.|++.+..++.+...|++.|++..+....
T Consensus 107 eytqqLE~g-g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i 152 (615)
T KOG2247|consen 107 EYTQQLESG-GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI 152 (615)
T ss_pred hhHHHHhcc-CcchHHHHhhccCCccccccccccceEEEeccchhhh
Confidence 2 2222211 1111112688999999999999999999998875544
No 486
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.48 E-value=4.4e+02 Score=30.82 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=30.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
.-+|+|.+|.||+|.+.||.--.|++|.+.+....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 35679999999999999999999999999887443
No 487
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.25 E-value=2e+02 Score=31.71 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=58.2
Q ss_pred CcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEE------CCCcEEEEeCCCCcEEEecc-----CCCcEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGS------LDAKVRIWSIPERQVVDWND-----LHEMVTAA 655 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs------~Dg~I~IWDl~t~~~v~~~~-----~~~~V~sl 655 (927)
..|++||..+.+....-. -.+.|+.|.|.. +.++++.|. ....+..||+.+........ .+.+|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 458999998877655443 678899999985 666666664 34568899998876544333 34678888
Q ss_pred EECC-CCC-EEEEEE-CCCe--EEEEEC
Q 002407 656 CYTP-DGQ-GALVGS-YKGS--CHLYNT 678 (927)
Q Consensus 656 a~sp-dg~-~l~tgs-~Dg~--I~IwDl 678 (927)
.+.. |+. ..+.|. .++. |..||=
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 7743 333 444443 3343 555653
No 488
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=51.88 E-value=3.8e+02 Score=29.86 Aligned_cols=145 Identities=17% Similarity=0.201 Sum_probs=76.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcE-----EEEEe--cCCce-EEEEEccC-CCCEEEEEE-CCCcEEEEeCCCCcEEE---e
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTC-----LKIFS--HSDYV-TCIQFNPV-DDRYFISGS-LDAKVRIWSIPERQVVD---W 645 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~-----~~~~~--h~~~V-~~v~fsp~-dg~~L~sgs-~Dg~I~IWDl~t~~~v~---~ 645 (927)
..++.+++||+|.-|...-... ...+. ....| ..+++... .+++|+.+. ..++|.+||-.-.++.. +
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 3578899999999998643322 12222 12333 34454431 345555543 46789999854332211 0
Q ss_pred ccC--C--------------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 646 NDL--H--------------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 646 ~~~--~--------------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.+. + -.|+-..-.++...=+.|-.-|.|-+||+... +++.+.. .......+.|+..
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as-------~g~LNaPWG~a~A 252 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVAS-------SGRLNAPWGLAIA 252 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEecc-------CCcccCCceeeeC
Confidence 000 0 01111112223333333444578999998654 4443321 3445566777776
Q ss_pred CC-----CCcEEEEEECCCcEEEEECC
Q 002407 710 PG-----SSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 710 pd-----g~~~Llsgs~Dg~I~VwD~~ 731 (927)
|. ...+|+---.||+|.+||..
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCC
Confidence 63 12244444679999999943
No 489
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=51.83 E-value=6.2e+02 Score=32.31 Aligned_cols=251 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCcCc----ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccc
Q 002407 463 KFSLDGRYLASAGEDCVIHVWQVVESE----RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (927)
Q Consensus 463 afSpdG~~LaSgs~DgtVrVWdv~~~~----~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~ 538 (927)
.+-++-..+++-+.+|.|+--.+.+-. ....+..............+.......++.....+..+
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~----------- 559 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVY----------- 559 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEE-----------
Q ss_pred cccccCcccccceEeecCCCce---EEEccCCCCEEEEE---ecCCcEEEEEeCCCcEEEEeCCC-------CcEEEEEe
Q 002407 539 KSLSLDHMVVPETVFALSDKPI---CSFQGHLDDVLDLS---WSKSQHLLSSSMDKTVRLWHLSS-------KTCLKIFS 605 (927)
Q Consensus 539 ~~~~~~~~~~~~~v~~~s~k~i---~~l~gH~~~V~~l~---~spd~~L~Sgs~DgtV~lWDl~t-------~~~~~~~~ 605 (927)
.......|..-+...+.++ ..+..-..-|.++. +.++..++..+.+|.++-..+.. +.....+.
T Consensus 560 ---~l~~~~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklk 636 (800)
T TIGR01063 560 ---WLKVYQIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLD 636 (800)
T ss_pred ---EEEhhhCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCC
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeC---------CCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI---------PERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl---------~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
..+.+..+.... ....++..+..|.+..+.+ ..|.....+...+.|.++....+...++..+..|.++..
T Consensus 637 e~D~lv~v~~~~-~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 637 DGDELISVRLTS-GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred CCCEEEEEEEeC-CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEE
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..-.....-.......+.......+..+....... .++..+.+|.+..+.
T Consensus 716 ~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~v~~~~-~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 716 SIEEYRETSRGGKGVKSIKITDRNGQVVGAIAVDDDD-ELMLITSAGKLIRTS 767 (800)
T ss_pred EHHHccccCCCCcceEEEEccCCCCeEEEEEEecCCC-eEEEEecCCeEEEee
No 490
>PHA02790 Kelch-like protein; Provisional
Probab=51.22 E-value=3.7e+02 Score=31.90 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=54.3
Q ss_pred cEEEEEeCC--CcEEEEeCCCCcEEEEEecCCce--EEEEEccCCCCEEEEEECCC---cEEEEeCCCCcEEEeccCCCc
Q 002407 579 QHLLSSSMD--KTVRLWHLSSKTCLKIFSHSDYV--TCIQFNPVDDRYFISGSLDA---KVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 579 ~~L~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V--~~v~fsp~dg~~L~sgs~Dg---~I~IWDl~t~~~v~~~~~~~~ 651 (927)
...+.|+.+ .++..||..+++....-.-..+. .+++.. ++++.+.|+.++ .+..||..+.+-........+
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 344555543 45788887766543322211111 122222 677778887654 367788777654432222211
Q ss_pred E-EEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 652 V-TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 652 V-~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
. ...+..-+++..+.| |.+.+||..+++....
T Consensus 398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLI 430 (480)
T ss_pred cccceEEEECCEEEEEC---CceEEecCCCCcEeEc
Confidence 1 111223456666766 4578899987765543
No 491
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=50.57 E-value=1.7e+02 Score=36.48 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK 491 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~ 491 (927)
|.||. |.+|+.+.+-.+++| .+|.|.-|-+.....+
T Consensus 226 L~gh~--~~qisvs~~HslvLT--~~g~Vys~GlN~~hqL 261 (1267)
T KOG0783|consen 226 LIGHK--VIQISVSHTHSLVLT--KFGSVYSWGLNGSHQL 261 (1267)
T ss_pred ccccc--eEEEEeecceeEEEe--ecceEEEeecCccccc
Confidence 45564 888999888776665 6899999988765433
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=50.38 E-value=64 Score=32.54 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=26.2
Q ss_pred CcEEEEEECCCC------CEEEEEECCCeEEEEECCCC
Q 002407 650 EMVTAACYTPDG------QGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 650 ~~V~sla~spdg------~~l~tgs~Dg~I~IwDl~~~ 681 (927)
..+..++|||-| -+|++-+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 379999999954 46888899999999987643
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=50.20 E-value=55 Score=39.54 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCEEEEEEcC----CCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 457 GSIWSIKFSL----DGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 457 ~~I~~vafSp----dG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
+.+..+++++ +..+|++.+.|+++||||+.+++++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4566677766 6789999999999999999999876554
No 494
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=49.48 E-value=1.5e+02 Score=34.46 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=90.0
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccC-CC----cEE-EEEECCCCCEEEEEECCCeEEEE-
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDL-HE----MVT-AACYTPDGQGALVGSYKGSCHLY- 676 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~-~~----~V~-sla~spdg~~l~tgs~Dg~I~Iw- 676 (927)
....|..+-..| +++.++.-+. ..+.++++.+..+.. ..+. ++ .|+ .+..-..|..++++..||-|.-|
T Consensus 219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 456678888999 9998877655 678888887654321 1111 11 222 22223456778899999998777
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCC-CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG-SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG 755 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg 755 (927)
|.+....... . ..+.++-....+..+ .|+ ...-+++-...|.+.++........+... ....+.-+++||++
T Consensus 297 dvr~~~~p~l-~---h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~ 369 (733)
T COG4590 297 DVRRDGQPHL-N---HIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQ 369 (733)
T ss_pred eeecCCCCcc-e---eeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCccc
Confidence 4443221110 0 000111111222221 232 22346666777888887643222211111 11234567899999
Q ss_pred CEEEEEECCCcEEEEECCCCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.+|++- +.|.|+++.+++..+
T Consensus 370 ~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 370 AYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred chheee-cCCceEEEEecCCCC
Confidence 999876 457799999988643
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=49.23 E-value=1.2e+02 Score=30.52 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=25.4
Q ss_pred cceEEEEEecCC------CEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANG------RYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg------~~Lasgs~Dg~I~IWdl~s 774 (927)
..+..++|||-| -+|++.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368899999954 3788889999999998764
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.02 E-value=1.5e+02 Score=38.72 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=85.7
Q ss_pred CCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEE--------EccCCCCEEEEEECCCcEEEE
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQ--------FNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~--------fsp~dg~~L~sgs~Dg~I~IW 635 (927)
|...-..+-+.|. ++ +=.+-|+.+.+|++.++.....+. ....|..|. |.| .=++++....--.|.|+
T Consensus 77 ~~~~~~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGR-AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVIL 154 (1311)
T ss_pred Ccceeeeeccchhhcc-eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEEE
Confidence 3333344445555 33 234568899999999866655554 344454443 233 22344444444455555
Q ss_pred eCC----CCcEEE------eccCCCcEEEEEECCCCCEEEEEECCCeEE--EEECCCCeeee---ecc---------ccc
Q 002407 636 SIP----ERQVVD------WNDLHEMVTAACYTPDGQGALVGSYKGSCH--LYNTSENKLQQ---KSP---------INL 691 (927)
Q Consensus 636 Dl~----t~~~v~------~~~~~~~V~sla~spdg~~l~tgs~Dg~I~--IwDl~~~~~~~---~~~---------i~~ 691 (927)
-+. ++..-. .....-.|+++....+|+.|++|- ||.|+ +|....+-... +.. ++.
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs 233 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS 233 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence 432 221111 112245788899888998777665 55332 22222211000 000 000
Q ss_pred ccccc-cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 692 QNKKK-RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 692 ~~~~~-~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
..+. ..+..+|..+.....- .++.+-+..++|.+||.
T Consensus 234 -~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 234 -LLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDI 271 (1311)
T ss_pred -hhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEc
Confidence 0111 2556789999988754 37888899999999994
No 497
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=45.85 E-value=5e+02 Score=29.54 Aligned_cols=214 Identities=10% Similarity=0.063 Sum_probs=0.0
Q ss_pred eecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC----CcEEEEEecCCceEEEEEccCCCCEEEEEEC
Q 002407 553 FALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS----KTCLKIFSHSDYVTCIQFNPVDDRYFISGSL 628 (927)
Q Consensus 553 ~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t----~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~ 628 (927)
+.+..+.+..+..-........+...=+++.|..+..+.++|+.. ...+..+............- ++.+++.|+.
T Consensus 15 ~~~~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~-~~~IYV~GG~ 93 (376)
T PRK14131 15 FAANAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI-DGKLYVFGGI 93 (376)
T ss_pred cceecccCCCCCcCccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE-CCEEEEEcCC
Q ss_pred CC-----------cEEEEeCCCCcEEEec--cCCCcEEEEEEC-CCCCEEEEEECC------------------------
Q 002407 629 DA-----------KVRIWSIPERQVVDWN--DLHEMVTAACYT-PDGQGALVGSYK------------------------ 670 (927)
Q Consensus 629 Dg-----------~I~IWDl~t~~~v~~~--~~~~~V~sla~s-pdg~~l~tgs~D------------------------ 670 (927)
.. .+..||..+.+-.... .........+.. -+++.++.|+.+
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Q ss_pred ---------------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE------CCCcEEEEE
Q 002407 671 ---------------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS------ADSRIRVVD 729 (927)
Q Consensus 671 ---------------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs------~Dg~I~VwD 729 (927)
..+.+||..++....... .........++...+..+++.|+ ....++.++
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~---------~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~ 244 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGE---------SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGK 244 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCc---------CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEE
Q ss_pred CCcceEEEEeecCC----------cceEEEEEecCCCEEEEEECC----------------------CcEEEEECCCCC
Q 002407 730 GIDLVHKFKGFRNT----------NSQISASLTANGRYVVSASED----------------------SYVYVWKYEAES 776 (927)
Q Consensus 730 ~~~~~~~~~~~~~~----------~~v~sv~fspdg~~Lasgs~D----------------------g~I~IWdl~s~~ 776 (927)
.......+...... ......+...++++++.|+.+ ..+.+||+++..
T Consensus 245 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 323 (376)
T PRK14131 245 FTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK 323 (376)
T ss_pred ecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc
No 498
>PLN02193 nitrile-specifier protein
Probab=45.76 E-value=5.8e+02 Score=30.19 Aligned_cols=95 Identities=9% Similarity=0.186 Sum_probs=52.1
Q ss_pred CcEEEEeCCCCcEEEEEec-----CCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEEEeccC------CCc
Q 002407 588 KTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVVDWNDL------HEM 651 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h-----~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v~~~~~------~~~ 651 (927)
..+..+|+.+.+....-.. ...-.+++.. ++++++.|+.++ .+..||+.+.+-...... ...
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 3578888887655432211 1111222222 567777777643 367788877654332211 111
Q ss_pred EEEEEECCCCCEEEEEECC----CeEEEEECCCCeeeee
Q 002407 652 VTAACYTPDGQGALVGSYK----GSCHLYNTSENKLQQK 686 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~D----g~I~IwDl~~~~~~~~ 686 (927)
...+. -+++.++.++.+ ..+.+||+.+.+....
T Consensus 322 ~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 322 AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred cEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence 12222 357777777755 4589999988776543
No 499
>PRK05560 DNA gyrase subunit A; Validated
Probab=45.66 E-value=7.6e+02 Score=31.55 Aligned_cols=196 Identities=11% Similarity=0.091 Sum_probs=99.6
Q ss_pred CcEEEEEeCCCcEEEEe---CCC------CcEEE---EEec-CCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCC---
Q 002407 578 SQHLLSSSMDKTVRLWH---LSS------KTCLK---IFSH-SDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPER--- 640 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWD---l~t------~~~~~---~~~h-~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~--- 640 (927)
...|+..+..|.+.... +.. |..+. .+.. ..-|.++.+... +..+++..+.+|.++--++..-
T Consensus 548 ~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~ 627 (805)
T PRK05560 548 HDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNI 627 (805)
T ss_pred CCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhc
Confidence 35666666677665553 332 22221 1222 233455555421 4668899999999887765331
Q ss_pred ----cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 641 ----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 641 ----~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.....+...+.+..+........++..+..|.+..+.+..-.............+. .....|..+....+....+
T Consensus 628 ~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~~i 706 (805)
T PRK05560 628 RSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKL-REGDEVVSMDVVREDSQEI 706 (805)
T ss_pred ccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccC-CCCCEEEEEEEEcCCCcEE
Confidence 11222223345555555555567888888888777765432111110000000111 2223344443333232257
Q ss_pred EEEECCCcEEEEECC---------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 717 LVTSADSRIRVVDGI---------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 717 lsgs~Dg~I~VwD~~---------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+..+..|.++..... .....++.......+..+........++..+.+|.+..++...
T Consensus 707 l~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 707 LTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred EEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 888888988887621 1223332222223444443334445566777788888887754
No 500
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=45.05 E-value=87 Score=37.80 Aligned_cols=38 Identities=5% Similarity=0.023 Sum_probs=29.4
Q ss_pred cEEEEEECC----CCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 651 MVTAACYTP----DGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 651 ~V~sla~sp----dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
.+..++++. +..+|++-+.|+.+++||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 456666666 77899999999999999999999966554
Done!