Query 002407
Match_columns 927
No_of_seqs 895 out of 5396
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 01:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 7.4E-44 2.5E-48 430.3 56.4 461 409-921 19-566 (611)
2 2ymu_A WD-40 repeat protein; u 100.0 8.4E-42 2.9E-46 406.3 58.7 448 422-924 29-541 (577)
3 1nr0_A Actin interacting prote 100.0 6.1E-42 2.1E-46 413.6 54.2 433 419-920 69-609 (611)
4 2ymu_A WD-40 repeat protein; u 100.0 2.4E-39 8.2E-44 385.1 55.9 420 422-919 152-577 (577)
5 1pgu_A Actin interacting prote 100.0 4.5E-37 1.5E-41 366.9 48.6 436 423-922 32-572 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-37 1.5E-41 399.5 48.5 441 418-920 624-1156(1249)
7 1got_B GT-beta; complex (GTP-b 100.0 9.3E-37 3.2E-41 340.5 42.8 291 449-771 48-340 (340)
8 1vyh_C Platelet-activating fac 100.0 3.8E-36 1.3E-40 344.9 40.5 283 450-773 102-410 (410)
9 2pbi_B Guanine nucleotide-bind 100.0 1.7E-35 5.9E-40 332.7 43.0 294 449-771 57-354 (354)
10 3ow8_A WD repeat-containing pr 100.0 3.1E-35 1.1E-39 326.2 41.0 287 450-773 26-320 (321)
11 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-35 3.1E-39 377.7 51.6 458 419-920 667-1247(1249)
12 3iz6_a 40S ribosomal protein R 100.0 6.9E-36 2.4E-40 338.9 34.8 308 446-776 56-377 (380)
13 2ynn_A Coatomer subunit beta'; 100.0 1.4E-34 4.6E-39 317.8 41.6 256 448-781 5-266 (304)
14 1pgu_A Actin interacting prote 100.0 2.1E-34 7.1E-39 343.8 46.6 437 420-920 77-612 (615)
15 2xzm_R RACK1; ribosome, transl 100.0 2.6E-34 8.9E-39 320.8 43.5 255 447-776 12-287 (343)
16 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-34 1.5E-38 359.9 50.6 455 417-920 25-659 (902)
17 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-34 5.7E-39 323.1 40.0 307 446-779 5-340 (345)
18 3frx_A Guanine nucleotide-bind 100.0 3.7E-34 1.3E-38 316.7 41.5 295 446-775 7-318 (319)
19 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-34 9.5E-39 355.8 43.5 408 447-920 4-458 (814)
20 2oaj_A Protein SNI1; WD40 repe 100.0 5.8E-34 2E-38 358.7 46.3 417 452-922 13-605 (902)
21 4g56_B MGC81050 protein; prote 100.0 1.2E-34 4.2E-39 326.3 35.6 315 424-777 19-346 (357)
22 4gqb_B Methylosome protein 50; 100.0 1.3E-33 4.3E-38 316.9 41.4 250 453-778 79-335 (344)
23 4ery_A WD repeat-containing pr 100.0 4.6E-33 1.6E-37 305.2 43.4 288 448-773 15-311 (312)
24 1erj_A Transcriptional repress 100.0 2.6E-33 9.1E-38 319.1 42.6 296 454-774 62-389 (393)
25 4aow_A Guanine nucleotide-bind 100.0 3.6E-33 1.2E-37 307.5 42.2 296 447-776 29-339 (340)
26 2hes_X YDR267CP; beta-propelle 100.0 2E-33 6.8E-38 312.4 39.5 305 447-774 5-328 (330)
27 1r5m_A SIR4-interacting protei 100.0 1.3E-33 4.5E-38 319.6 37.5 288 453-776 42-363 (425)
28 3mkq_A Coatomer beta'-subunit; 100.0 8.1E-33 2.8E-37 342.7 46.9 419 421-920 25-503 (814)
29 1got_B GT-beta; complex (GTP-b 100.0 5.9E-33 2E-37 309.7 38.8 286 557-919 45-340 (340)
30 1gxr_A ESG1, transducin-like e 100.0 1.6E-32 5.4E-37 301.1 41.6 284 452-772 47-335 (337)
31 2pm9_A Protein WEB1, protein t 100.0 2.9E-34 9.9E-39 325.8 27.5 289 455-778 11-341 (416)
32 1vyh_C Platelet-activating fac 100.0 3.4E-33 1.2E-37 320.3 36.4 283 559-919 100-408 (410)
33 2ynn_A Coatomer subunit beta'; 100.0 2.3E-32 8E-37 299.9 41.3 269 421-774 25-302 (304)
34 4gqb_B Methylosome protein 50; 100.0 3.9E-33 1.3E-37 312.9 34.5 295 453-815 27-331 (344)
35 3frx_A Guanine nucleotide-bind 100.0 3.7E-32 1.3E-36 300.7 40.1 280 419-730 28-315 (319)
36 2xzm_R RACK1; ribosome, transl 100.0 1.3E-32 4.5E-37 307.0 36.1 274 421-775 39-341 (343)
37 1r5m_A SIR4-interacting protei 100.0 2.6E-32 9E-37 309.0 38.4 316 417-773 54-424 (425)
38 2pbi_B Guanine nucleotide-bind 100.0 4.8E-32 1.6E-36 304.6 38.8 288 557-919 54-354 (354)
39 3ow8_A WD repeat-containing pr 100.0 4.9E-32 1.7E-36 300.4 38.0 268 421-730 48-319 (321)
40 2pm7_B Protein transport prote 100.0 6.4E-32 2.2E-36 295.4 34.9 252 450-774 3-285 (297)
41 2pm9_A Protein WEB1, protein t 100.0 3.5E-33 1.2E-37 316.9 24.9 318 428-775 42-415 (416)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.1E-31 1E-35 296.6 39.8 305 558-921 6-334 (345)
43 4g56_B MGC81050 protein; prote 100.0 2.5E-32 8.7E-37 307.3 30.9 280 461-775 10-302 (357)
44 3ei3_B DNA damage-binding prot 100.0 1.3E-31 4.3E-36 302.2 36.1 294 447-774 64-382 (383)
45 3iz6_a 40S ribosomal protein R 100.0 1.8E-32 6.1E-37 310.8 28.1 299 557-922 56-375 (380)
46 1sq9_A Antiviral protein SKI8; 100.0 1.3E-31 4.3E-36 302.4 34.5 295 448-775 8-396 (397)
47 3zwl_B Eukaryotic translation 100.0 1.9E-30 6.5E-35 287.9 42.7 289 447-776 23-348 (369)
48 3dm0_A Maltose-binding peripla 100.0 4.8E-31 1.6E-35 322.8 41.1 289 449-773 375-692 (694)
49 3odt_A Protein DOA1; ubiquitin 100.0 9E-31 3.1E-35 284.4 38.3 292 446-778 8-300 (313)
50 3i2n_A WD repeat-containing pr 100.0 1.7E-31 5.7E-36 295.8 33.1 295 450-776 12-355 (357)
51 3k26_A Polycomb protein EED; W 100.0 9.8E-32 3.3E-36 298.3 31.1 296 452-774 14-366 (366)
52 3vl1_A 26S proteasome regulato 100.0 1.7E-31 5.9E-36 304.0 33.2 282 457-778 57-369 (420)
53 4ery_A WD repeat-containing pr 100.0 1.6E-30 5.4E-35 285.0 39.2 288 558-920 14-310 (312)
54 4aow_A Guanine nucleotide-bind 100.0 6E-30 2.1E-34 281.6 40.3 282 419-731 49-336 (340)
55 1erj_A Transcriptional repress 100.0 4.9E-30 1.7E-34 292.1 38.4 296 564-920 61-387 (393)
56 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-31 8.3E-36 314.8 27.1 200 561-774 201-428 (524)
57 3vl1_A 26S proteasome regulato 100.0 2.9E-30 1E-34 293.9 34.2 308 422-774 69-419 (420)
58 1k8k_C P40, ARP2/3 complex 41 100.0 4.8E-30 1.6E-34 286.1 34.4 285 452-776 4-363 (372)
59 3f3f_A Nucleoporin SEH1; struc 100.0 6.9E-30 2.4E-34 279.5 34.9 256 450-778 5-341 (351)
60 1gxr_A ESG1, transducin-like e 100.0 1.7E-29 5.7E-34 276.9 38.0 287 454-778 7-300 (337)
61 3bg1_A Protein SEC13 homolog; 100.0 4.8E-31 1.7E-35 291.3 25.5 246 450-774 7-293 (316)
62 4e54_B DNA damage-binding prot 100.0 6.5E-31 2.2E-35 303.3 27.3 302 560-920 112-428 (435)
63 2hes_X YDR267CP; beta-propelle 100.0 8E-30 2.7E-34 283.3 35.0 276 421-731 24-327 (330)
64 4a11_B DNA excision repair pro 100.0 9.3E-30 3.2E-34 286.7 36.0 314 432-779 24-370 (408)
65 3v7d_B Cell division control p 100.0 8.5E-29 2.9E-33 286.5 44.2 284 448-779 113-426 (464)
66 3ei3_B DNA damage-binding prot 100.0 1.7E-29 5.7E-34 284.8 36.5 300 557-920 63-380 (383)
67 3gre_A Serine/threonine-protei 100.0 1.6E-30 5.6E-35 298.5 28.8 305 450-771 56-437 (437)
68 3zwl_B Eukaryotic translation 100.0 2.4E-29 8.3E-34 278.9 36.6 296 559-920 24-344 (369)
69 3jrp_A Fusion protein of prote 100.0 9.3E-30 3.2E-34 283.8 33.4 254 449-775 4-288 (379)
70 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.7E-29 3.3E-33 285.1 42.3 303 421-775 129-443 (445)
71 3dm0_A Maltose-binding peripla 100.0 3.8E-29 1.3E-33 306.0 40.7 282 419-731 393-692 (694)
72 4aez_A CDC20, WD repeat-contai 100.0 4E-29 1.4E-33 284.8 38.0 272 422-779 104-385 (401)
73 3dwl_C Actin-related protein 2 100.0 1.3E-30 4.5E-35 292.6 24.9 285 452-772 7-377 (377)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-28 5.9E-33 283.0 41.7 319 449-924 111-444 (445)
75 4e54_B DNA damage-binding prot 100.0 5E-30 1.7E-34 295.9 28.6 292 450-816 113-431 (435)
76 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-30 1.4E-34 304.3 28.1 283 423-775 175-518 (524)
77 4gga_A P55CDC, cell division c 100.0 1.2E-28 4E-33 282.9 39.2 270 422-777 117-398 (420)
78 3gre_A Serine/threonine-protei 100.0 8.4E-30 2.9E-34 292.6 29.3 316 553-919 48-437 (437)
79 1yfq_A Cell cycle arrest prote 100.0 2.3E-29 8E-34 277.5 30.9 290 452-772 7-322 (342)
80 4h5i_A Guanine nucleotide-exch 100.0 4.1E-29 1.4E-33 282.2 33.0 298 456-775 14-344 (365)
81 3v7d_B Cell division control p 100.0 2.6E-28 8.7E-33 282.5 40.0 324 420-772 131-461 (464)
82 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-28 4.8E-33 274.3 35.3 246 563-815 4-274 (372)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-29 1E-33 285.5 29.2 280 422-775 48-343 (402)
84 3dw8_B Serine/threonine-protei 100.0 9.5E-29 3.3E-33 283.4 32.2 253 454-777 26-376 (447)
85 3dwl_C Actin-related protein 2 100.0 2.4E-29 8.3E-34 282.3 26.4 242 563-814 7-280 (377)
86 4a11_B DNA excision repair pro 100.0 2.9E-28 9.9E-33 274.5 35.1 330 557-921 33-404 (408)
87 3k26_A Polycomb protein EED; W 100.0 2E-28 6.8E-33 271.6 31.6 296 562-920 13-364 (366)
88 4ggc_A P55CDC, cell division c 100.0 1.3E-27 4.6E-32 260.2 37.6 239 459-775 28-274 (318)
89 4ggc_A P55CDC, cell division c 100.0 1.9E-27 6.5E-32 259.1 38.7 268 423-775 38-316 (318)
90 4gga_A P55CDC, cell division c 100.0 1.4E-27 4.7E-32 274.0 39.4 240 458-775 107-354 (420)
91 1sq9_A Antiviral protein SKI8; 100.0 5.2E-28 1.8E-32 272.8 34.7 299 421-731 26-394 (397)
92 4aez_A CDC20, WD repeat-contai 100.0 1.5E-27 5.3E-32 271.6 35.8 240 452-774 87-336 (401)
93 2j04_A TAU60, YPL007P, hypothe 100.0 3.4E-29 1.2E-33 292.1 21.3 260 454-773 13-296 (588)
94 2pm7_B Protein transport prote 100.0 1.2E-27 4.1E-32 261.5 32.3 207 561-774 3-238 (297)
95 3mmy_A MRNA export factor; mRN 100.0 9.5E-28 3.3E-32 266.0 31.7 298 447-775 30-347 (368)
96 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-27 7.7E-32 273.3 34.4 269 414-778 136-418 (435)
97 3jro_A Fusion protein of prote 100.0 4.4E-28 1.5E-32 299.8 28.3 255 450-777 3-288 (753)
98 3dw8_B Serine/threonine-protei 100.0 2.8E-27 9.6E-32 271.2 32.8 325 414-773 33-445 (447)
99 3i2n_A WD repeat-containing pr 100.0 4.5E-27 1.5E-31 260.1 33.1 284 418-733 28-354 (357)
100 3f3f_A Nucleoporin SEH1; struc 100.0 6E-27 2.1E-31 256.1 32.1 217 561-777 5-252 (351)
101 2xyi_A Probable histone-bindin 100.0 6.3E-27 2.1E-31 269.7 32.2 257 450-774 122-410 (430)
102 1yfq_A Cell cycle arrest prote 100.0 1.8E-26 6.1E-31 254.4 31.4 286 563-919 7-321 (342)
103 3odt_A Protein DOA1; ubiquitin 100.0 8.4E-26 2.9E-30 245.1 36.2 262 422-732 30-296 (313)
104 3bg1_A Protein SEC13 homolog; 100.0 4.9E-27 1.7E-31 259.1 25.5 208 562-775 8-248 (316)
105 1l0q_A Surface layer protein; 100.0 5.2E-25 1.8E-29 248.2 41.5 267 423-778 4-279 (391)
106 3jrp_A Fusion protein of prote 100.0 3.9E-26 1.3E-30 254.4 31.6 211 558-776 2-242 (379)
107 1p22_A F-BOX/WD-repeat protein 99.9 2.6E-25 8.9E-30 256.0 38.3 280 453-825 130-414 (435)
108 3mmy_A MRNA export factor; mRN 99.9 7.8E-26 2.7E-30 250.5 31.9 300 558-923 30-347 (368)
109 3bws_A Protein LP49; two-domai 99.9 4.4E-25 1.5E-29 252.4 37.7 309 426-774 94-432 (433)
110 2aq5_A Coronin-1A; WD40 repeat 99.9 7.2E-26 2.5E-30 257.5 30.2 206 562-777 76-302 (402)
111 3vu4_A KMHSV2; beta-propeller 99.9 1.6E-25 5.6E-30 251.4 30.8 280 450-777 13-339 (355)
112 4gq1_A NUP37; propeller, trans 99.9 2.5E-26 8.5E-31 261.7 24.0 255 453-773 86-388 (393)
113 4h5i_A Guanine nucleotide-exch 99.9 1.6E-25 5.5E-30 252.7 29.1 265 430-731 42-342 (365)
114 3lrv_A PRE-mRNA-splicing facto 99.9 1.2E-25 4.2E-30 250.3 26.6 269 422-774 49-333 (343)
115 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-25 5.6E-30 249.3 25.4 232 463-777 43-295 (343)
116 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.5E-24 5E-29 251.0 34.3 291 457-775 5-392 (450)
117 2j04_A TAU60, YPL007P, hypothe 99.9 6E-25 2.1E-29 256.5 21.7 303 413-802 20-347 (588)
118 2xyi_A Probable histone-bindin 99.9 1.1E-23 3.9E-28 242.4 31.6 249 420-731 140-409 (430)
119 1l0q_A Surface layer protein; 99.9 1.6E-22 5.4E-27 227.9 39.1 237 568-817 32-277 (391)
120 3jro_A Fusion protein of prote 99.9 1.4E-23 4.7E-28 259.5 30.7 208 561-776 3-240 (753)
121 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.8E-23 2E-27 237.6 32.9 242 453-729 99-388 (450)
122 4gq1_A NUP37; propeller, trans 99.9 4.6E-24 1.6E-28 243.0 21.8 228 422-729 102-386 (393)
123 3bws_A Protein LP49; two-domai 99.9 1.4E-22 4.9E-27 231.5 32.3 271 420-731 133-431 (433)
124 1k32_A Tricorn protease; prote 99.9 6.3E-22 2.2E-26 253.3 41.6 345 431-802 33-488 (1045)
125 2w18_A PALB2, fancn, partner a 99.9 2E-22 6.9E-27 222.1 30.8 282 459-772 42-355 (356)
126 3vu4_A KMHSV2; beta-propeller 99.9 2.3E-22 7.9E-27 225.7 31.7 242 500-775 16-272 (355)
127 2w18_A PALB2, fancn, partner a 99.9 3E-22 1E-26 220.7 28.7 212 457-729 112-354 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.3E-21 7.7E-26 222.7 33.3 259 430-775 92-388 (415)
129 1nir_A Nitrite reductase; hemo 99.9 6.8E-21 2.3E-25 226.5 33.2 314 422-782 150-522 (543)
130 1ri6_A Putative isomerase YBHE 99.9 1.2E-19 4.2E-24 199.1 31.9 276 425-774 9-308 (343)
131 1nir_A Nitrite reductase; hemo 99.9 2.3E-19 7.9E-24 213.3 34.7 277 464-778 145-462 (543)
132 1k32_A Tricorn protease; prote 99.9 4.9E-19 1.7E-23 226.5 37.8 279 450-773 197-501 (1045)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.5E-19 2.2E-23 202.2 34.9 235 431-756 159-410 (415)
134 3u4y_A Uncharacterized protein 99.8 5.2E-19 1.8E-23 194.3 31.7 271 420-775 9-305 (331)
135 2ecf_A Dipeptidyl peptidase IV 99.8 1.1E-19 3.8E-24 223.0 29.2 312 456-803 36-442 (741)
136 2ojh_A Uncharacterized protein 99.8 4.6E-19 1.6E-23 189.1 27.5 251 427-765 18-293 (297)
137 2ecf_A Dipeptidyl peptidase IV 99.8 4E-19 1.4E-23 218.0 29.1 294 432-775 65-460 (741)
138 1pby_B Quinohemoprotein amine 99.8 5.1E-19 1.7E-23 193.6 24.3 272 423-778 3-314 (337)
139 2z3z_A Dipeptidyl aminopeptida 99.8 1.8E-18 6E-23 211.2 28.2 308 429-776 43-437 (706)
140 3hfq_A Uncharacterized protein 99.8 1.5E-17 5E-22 184.6 32.5 269 432-774 19-317 (347)
141 3u4y_A Uncharacterized protein 99.8 2E-17 7E-22 181.5 32.0 276 579-922 11-304 (331)
142 1xfd_A DIP, dipeptidyl aminope 99.8 1.2E-18 4.2E-23 212.9 24.2 319 458-805 18-429 (723)
143 3vgz_A Uncharacterized protein 99.8 2.4E-17 8.2E-22 182.0 31.7 269 455-765 39-335 (353)
144 3o4h_A Acylamino-acid-releasin 99.8 3.6E-18 1.2E-22 204.0 26.9 271 455-774 20-315 (582)
145 2z3z_A Dipeptidyl aminopeptida 99.8 8.2E-18 2.8E-22 205.3 28.4 197 566-773 80-341 (706)
146 1ri6_A Putative isomerase YBHE 99.8 5.2E-17 1.8E-21 178.1 29.1 202 566-774 36-262 (343)
147 2ojh_A Uncharacterized protein 99.8 6.6E-17 2.3E-21 172.4 27.5 261 583-859 17-290 (297)
148 3scy_A Hypothetical bacterial 99.8 5.1E-16 1.7E-20 173.3 34.8 269 429-774 25-337 (361)
149 1xfd_A DIP, dipeptidyl aminope 99.8 2.7E-17 9.2E-22 201.0 24.2 294 428-763 34-429 (723)
150 2oit_A Nucleoporin 214KDA; NH2 99.7 1.3E-16 4.5E-21 184.2 27.1 168 454-681 90-279 (434)
151 1pby_B Quinohemoprotein amine 99.7 4.1E-16 1.4E-20 170.4 26.2 193 570-777 36-272 (337)
152 1jmx_B Amine dehydrogenase; ox 99.7 1.5E-16 5E-21 175.2 22.3 241 461-777 4-328 (349)
153 3vgz_A Uncharacterized protein 99.7 2.2E-15 7.4E-20 166.2 31.3 202 566-778 39-266 (353)
154 2oit_A Nucleoporin 214KDA; NH2 99.7 1.8E-16 6.3E-21 183.0 23.3 206 565-773 90-332 (434)
155 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.7E-15 5.7E-20 170.1 28.4 250 455-775 38-342 (365)
156 3hfq_A Uncharacterized protein 99.7 7.8E-15 2.7E-19 162.5 29.6 202 566-774 38-271 (347)
157 1q7f_A NHL, brain tumor CG1071 99.7 7.8E-14 2.7E-18 150.1 33.9 246 453-775 26-281 (286)
158 1z68_A Fibroblast activation p 99.7 5.4E-16 1.8E-20 189.8 18.5 311 429-776 34-445 (719)
159 3pe7_A Oligogalacturonate lyas 99.7 8.5E-15 2.9E-19 164.3 25.5 290 451-773 25-381 (388)
160 1jmx_B Amine dehydrogenase; ox 99.6 1E-14 3.5E-19 160.3 24.2 229 420-733 10-326 (349)
161 3o4h_A Acylamino-acid-releasin 99.6 4.9E-15 1.7E-19 176.8 20.9 263 414-732 27-315 (582)
162 1z68_A Fibroblast activation p 99.6 3.5E-15 1.2E-19 182.6 19.4 284 461-774 20-391 (719)
163 4a5s_A Dipeptidyl peptidase 4 99.6 5.9E-14 2E-18 172.9 28.7 280 458-763 18-382 (740)
164 4a5s_A Dipeptidyl peptidase 4 99.6 4E-13 1.4E-17 165.4 33.3 315 423-776 30-451 (740)
165 2oiz_A Aromatic amine dehydrog 99.6 1.5E-13 5.1E-18 154.6 26.3 273 429-775 29-335 (361)
166 3scy_A Hypothetical bacterial 99.6 9.8E-13 3.4E-17 146.5 32.6 253 430-752 74-360 (361)
167 3pe7_A Oligogalacturonate lyas 99.6 1.5E-13 5E-18 154.2 24.2 285 432-729 61-379 (388)
168 3c5m_A Oligogalacturonate lyas 99.6 8.1E-14 2.8E-18 156.2 20.8 277 456-772 35-380 (396)
169 3azo_A Aminopeptidase; POP fam 99.6 1.7E-13 5.9E-18 165.7 25.0 298 450-776 17-371 (662)
170 3fvz_A Peptidyl-glycine alpha- 99.5 2.6E-12 8.8E-17 142.1 28.8 238 456-730 23-320 (329)
171 1jof_A Carboxy-CIS,CIS-muconat 99.5 2.9E-12 9.8E-17 143.7 27.6 199 568-774 40-291 (365)
172 2gop_A Trilobed protease; beta 99.5 2.7E-12 9.3E-17 141.6 26.9 268 429-773 41-330 (347)
173 3c5m_A Oligogalacturonate lyas 99.5 1.4E-12 4.7E-17 146.1 23.2 264 430-729 59-379 (396)
174 2dg1_A DRP35, lactonase; beta 99.5 3E-11 1E-15 132.6 33.4 242 451-765 39-301 (333)
175 2z2n_A Virginiamycin B lyase; 99.5 3E-10 1E-14 121.7 39.5 280 452-775 10-296 (299)
176 3e5z_A Putative gluconolactona 99.5 3.4E-11 1.2E-15 130.3 31.5 238 450-774 21-286 (296)
177 3dsm_A Uncharacterized protein 99.5 7.7E-12 2.6E-16 138.4 26.4 266 427-777 13-304 (328)
178 3azo_A Aminopeptidase; POP fam 99.4 7.4E-12 2.5E-16 151.4 26.1 273 428-731 44-368 (662)
179 1rwi_B Serine/threonine-protei 99.4 2.2E-11 7.4E-16 129.3 25.3 197 569-776 68-266 (270)
180 1qks_A Cytochrome CD1 nitrite 99.4 4.9E-10 1.7E-14 133.3 39.5 269 423-775 169-478 (567)
181 2xdw_A Prolyl endopeptidase; a 99.4 2.1E-11 7.1E-16 149.3 28.4 239 454-776 122-416 (710)
182 2bkl_A Prolyl endopeptidase; m 99.4 6E-12 2.1E-16 153.7 23.0 240 453-776 117-399 (695)
183 2gop_A Trilobed protease; beta 99.4 1.1E-10 3.9E-15 128.6 29.4 182 569-774 60-291 (347)
184 1q7f_A NHL, brain tumor CG1071 99.4 1.1E-10 3.8E-15 125.3 28.4 227 422-680 42-280 (286)
185 1qks_A Cytochrome CD1 nitrite 99.4 6.7E-10 2.3E-14 132.2 36.5 197 580-777 169-376 (567)
186 2dg1_A DRP35, lactonase; beta 99.4 2.3E-10 7.7E-15 125.6 29.0 205 558-773 35-262 (333)
187 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.2E-10 1.1E-14 122.9 29.5 248 453-775 14-300 (314)
188 2oiz_A Aromatic amine dehydrog 99.3 2.5E-10 8.5E-15 128.2 28.4 235 572-815 54-334 (361)
189 2qc5_A Streptogramin B lactona 99.3 4.6E-09 1.6E-13 112.4 36.9 278 453-773 16-299 (300)
190 3fvz_A Peptidyl-glycine alpha- 99.3 8.2E-10 2.8E-14 121.9 31.6 221 431-680 69-322 (329)
191 3no2_A Uncharacterized protein 99.3 4.2E-10 1.4E-14 121.6 26.0 211 467-762 4-231 (276)
192 3dsm_A Uncharacterized protein 99.3 6.8E-10 2.3E-14 122.7 27.9 191 570-777 46-256 (328)
193 1yr2_A Prolyl oligopeptidase; 99.3 2E-10 6.8E-15 141.4 24.5 239 454-776 160-443 (741)
194 3e5z_A Putative gluconolactona 99.3 1.2E-09 4.1E-14 118.0 27.1 197 558-773 18-245 (296)
195 2xdw_A Prolyl endopeptidase; a 99.2 1.2E-09 3.9E-14 133.8 28.9 200 566-776 123-370 (710)
196 2z2n_A Virginiamycin B lyase; 99.2 3.4E-08 1.1E-12 105.6 37.0 194 566-773 55-254 (299)
197 2mad_H Methylamine dehydrogena 99.2 1E-08 3.5E-13 115.7 34.1 274 432-780 48-356 (373)
198 3no2_A Uncharacterized protein 99.2 1.5E-09 5E-14 117.3 25.4 193 576-779 3-200 (276)
199 1rwi_B Serine/threonine-protei 99.2 3.7E-09 1.3E-13 111.9 25.5 234 569-823 25-262 (270)
200 3hrp_A Uncharacterized protein 99.1 1.4E-08 4.8E-13 116.0 29.5 245 456-773 130-409 (409)
201 2bkl_A Prolyl endopeptidase; m 99.1 1.6E-09 5.6E-14 132.1 22.0 195 565-773 118-348 (695)
202 1xip_A Nucleoporin NUP159; bet 99.1 1.7E-09 5.9E-14 122.0 18.4 137 566-713 87-226 (388)
203 3dr2_A Exported gluconolactona 99.1 2.9E-08 9.8E-13 108.1 27.2 234 451-771 39-303 (305)
204 1xip_A Nucleoporin NUP159; bet 99.1 4E-08 1.4E-12 110.9 29.0 235 414-729 42-309 (388)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 6.3E-08 2.2E-12 104.6 29.8 199 564-776 14-258 (314)
206 2ghs_A AGR_C_1268P; regucalcin 99.1 1.1E-07 3.7E-12 104.9 32.1 186 568-764 90-292 (326)
207 3iuj_A Prolyl endopeptidase; h 99.1 4.8E-09 1.6E-13 128.1 22.5 242 453-776 125-407 (693)
208 3g4e_A Regucalcin; six bladed 99.1 1.2E-07 4E-12 102.9 31.1 187 568-763 54-261 (297)
209 2mad_H Methylamine dehydrogena 99.0 1.3E-07 4.4E-12 106.7 31.0 170 589-775 48-244 (373)
210 2qc5_A Streptogramin B lactona 99.0 7.2E-07 2.5E-11 95.2 35.4 194 566-773 60-259 (300)
211 3c75_H MADH, methylamine dehyd 99.0 2.1E-08 7.2E-13 114.6 24.3 275 431-780 99-408 (426)
212 3sjl_D Methylamine dehydrogena 99.0 5.4E-08 1.9E-12 109.5 26.8 275 430-780 58-369 (386)
213 1yr2_A Prolyl oligopeptidase; 99.0 3.6E-08 1.2E-12 121.2 27.6 193 566-773 161-392 (741)
214 2qe8_A Uncharacterized protein 99.0 4E-08 1.4E-12 109.0 24.2 204 565-771 64-318 (343)
215 3g4e_A Regucalcin; six bladed 99.0 1.7E-07 5.6E-12 101.7 28.0 199 565-778 10-233 (297)
216 4a2l_A BT_4663, two-component 98.9 1.5E-05 5.1E-10 98.6 47.2 313 421-775 183-527 (795)
217 3hrp_A Uncharacterized protein 98.9 3.4E-07 1.2E-11 104.5 28.3 202 568-776 131-356 (409)
218 2ghs_A AGR_C_1268P; regucalcin 98.9 1.5E-06 5.2E-11 95.6 30.3 190 568-773 49-259 (326)
219 3hxj_A Pyrrolo-quinoline quino 98.9 9.2E-08 3.1E-12 104.1 20.1 296 419-775 28-325 (330)
220 2ece_A 462AA long hypothetical 98.8 1.1E-06 3.7E-11 99.9 28.4 190 572-762 142-399 (462)
221 3sjl_D Methylamine dehydrogena 98.8 9.9E-07 3.4E-11 99.2 28.0 198 573-780 83-326 (386)
222 3q7m_A Lipoprotein YFGL, BAMB; 98.8 1.6E-06 5.4E-11 96.9 29.6 267 422-778 54-341 (376)
223 4a2l_A BT_4663, two-component 98.8 0.00013 4.4E-09 90.2 46.6 320 415-776 92-438 (795)
224 3c75_H MADH, methylamine dehyd 98.7 3E-07 1E-11 105.1 20.3 173 588-775 99-296 (426)
225 1mda_H Methylamine dehydrogena 98.7 1.9E-07 6.4E-12 104.9 16.2 268 432-780 47-352 (368)
226 3dr2_A Exported gluconolactona 98.7 3.3E-06 1.1E-10 91.6 25.4 198 558-773 35-266 (305)
227 3iuj_A Prolyl endopeptidase; h 98.7 9.5E-07 3.2E-11 107.7 22.5 194 566-775 127-360 (693)
228 3v9f_A Two-component system se 98.6 0.0003 1E-08 86.7 43.6 333 418-775 170-525 (781)
229 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.2E-05 4E-10 89.8 28.1 262 422-771 104-375 (376)
230 1kb0_A Quinohemoprotein alcoho 98.6 4.3E-06 1.5E-10 101.7 25.1 177 572-760 247-536 (677)
231 3v9f_A Two-component system se 98.6 0.00077 2.6E-08 83.0 45.0 324 416-776 216-570 (781)
232 2iwa_A Glutamine cyclotransfer 98.5 1.6E-05 5.3E-10 84.9 25.2 201 458-730 22-235 (266)
233 1yiq_A Quinohemoprotein alcoho 98.5 7.6E-06 2.6E-10 99.7 25.2 180 572-763 239-538 (689)
234 1kb0_A Quinohemoprotein alcoho 98.5 5.5E-06 1.9E-10 100.7 23.6 200 578-780 174-513 (677)
235 3hxj_A Pyrrolo-quinoline quino 98.5 3.3E-06 1.1E-10 91.7 19.1 173 578-772 107-282 (330)
236 1yiq_A Quinohemoprotein alcoho 98.5 8.5E-06 2.9E-10 99.2 24.4 200 578-780 167-511 (689)
237 3nol_A Glutamine cyclotransfer 98.5 2.4E-05 8.4E-10 82.7 24.3 196 450-719 35-243 (262)
238 2hz6_A Endoplasmic reticulum t 98.4 4.9E-08 1.7E-12 109.8 2.2 161 579-756 50-216 (369)
239 1npe_A Nidogen, entactin; glyc 98.4 0.00018 6.2E-09 76.0 29.4 197 569-777 37-241 (267)
240 2hz6_A Endoplasmic reticulum t 98.4 3.6E-08 1.2E-12 110.9 0.3 179 578-777 9-195 (369)
241 2iwa_A Glutamine cyclotransfer 98.4 5.5E-05 1.9E-09 80.7 24.6 206 559-775 11-238 (266)
242 2qe8_A Uncharacterized protein 98.4 1.7E-05 5.7E-10 87.8 21.1 204 568-774 17-278 (343)
243 1npe_A Nidogen, entactin; glyc 98.4 0.00022 7.6E-09 75.4 28.6 244 431-713 10-263 (267)
244 2fp8_A Strictosidine synthase; 98.4 5.3E-05 1.8E-09 82.7 24.3 196 569-774 81-313 (322)
245 1fwx_A Nitrous oxide reductase 98.3 9.9E-06 3.4E-10 95.1 18.3 185 588-776 175-433 (595)
246 2ece_A 462AA long hypothetical 98.3 4.6E-05 1.6E-09 86.6 22.9 187 580-775 98-353 (462)
247 3nok_A Glutaminyl cyclase; bet 98.3 5.6E-05 1.9E-09 80.1 21.6 190 457-720 55-254 (268)
248 3mbr_X Glutamine cyclotransfer 98.2 0.00027 9.3E-09 74.0 24.7 138 579-720 76-223 (243)
249 1mda_H Methylamine dehydrogena 98.2 3.1E-05 1.1E-09 86.8 18.2 98 581-680 35-158 (368)
250 3nol_A Glutamine cyclotransfer 98.2 0.00012 4.1E-09 77.4 21.4 196 560-764 34-245 (262)
251 3nok_A Glutaminyl cyclase; bet 98.2 0.00013 4.4E-09 77.2 20.9 184 569-763 56-254 (268)
252 3mbr_X Glutamine cyclotransfer 98.1 0.00035 1.2E-08 73.2 23.4 204 559-772 11-231 (243)
253 2p4o_A Hypothetical protein; p 98.1 0.0019 6.5E-08 69.8 30.1 185 569-765 73-279 (306)
254 1kv9_A Type II quinohemoprotei 98.0 0.0002 6.7E-09 86.9 22.0 191 587-780 177-494 (668)
255 2fp8_A Strictosidine synthase; 98.0 0.0017 5.9E-08 70.6 27.4 192 568-773 19-268 (322)
256 1fwx_A Nitrous oxide reductase 98.0 7.9E-05 2.7E-09 87.5 16.9 185 579-774 102-361 (595)
257 2p4o_A Hypothetical protein; p 97.9 0.0017 5.8E-08 70.2 25.4 199 568-773 32-241 (306)
258 3qqz_A Putative uncharacterize 97.9 0.0025 8.6E-08 67.4 25.1 208 562-772 21-251 (255)
259 2ad6_A Methanol dehydrogenase 97.9 0.0023 8E-08 75.9 27.4 198 579-779 161-499 (571)
260 3v64_C Agrin; beta propeller, 97.9 0.007 2.4E-07 67.0 29.4 197 569-775 35-235 (349)
261 3v64_C Agrin; beta propeller, 97.9 0.0077 2.6E-07 66.7 29.1 200 566-776 71-277 (349)
262 3v65_B Low-density lipoprotein 97.8 0.0047 1.6E-07 69.4 27.7 201 565-776 113-320 (386)
263 3v65_B Low-density lipoprotein 97.8 0.0059 2E-07 68.6 27.9 195 571-775 80-278 (386)
264 1kv9_A Type II quinohemoprotei 97.8 0.004 1.4E-07 75.4 28.0 179 572-762 234-520 (668)
265 1ijq_A LDL receptor, low-densi 97.8 0.014 4.7E-07 63.5 29.8 202 566-777 28-241 (316)
266 2xbg_A YCF48-like protein; pho 97.8 0.025 8.5E-07 61.8 31.1 192 568-772 122-320 (327)
267 3p5b_L Low density lipoprotein 97.7 0.026 9E-07 63.6 31.4 211 558-778 102-324 (400)
268 1w6s_A Methanol dehydrogenase 97.7 0.0028 9.6E-08 75.5 24.1 102 586-688 180-350 (599)
269 2xe4_A Oligopeptidase B; hydro 97.7 0.0017 5.7E-08 79.8 22.0 145 572-730 225-398 (751)
270 4hw6_A Hypothetical protein, I 97.7 0.012 4.2E-07 67.1 27.8 204 569-773 183-432 (433)
271 1k3i_A Galactose oxidase precu 97.6 0.0016 5.3E-08 78.7 20.8 203 572-775 247-498 (656)
272 1ijq_A LDL receptor, low-densi 97.6 0.012 4.2E-07 64.0 25.9 178 587-774 9-195 (316)
273 1flg_A Protein (quinoprotein e 97.6 0.021 7.3E-07 67.7 30.0 164 588-762 291-548 (582)
274 3tc9_A Hypothetical hydrolase; 97.6 0.013 4.3E-07 66.9 26.0 203 569-773 180-429 (430)
275 1k3i_A Galactose oxidase precu 97.5 0.011 3.9E-07 71.1 26.3 257 432-721 220-530 (656)
276 3p5b_L Low density lipoprotein 97.5 0.048 1.6E-06 61.5 29.7 187 579-775 84-278 (400)
277 2ad6_A Methanol dehydrogenase 97.5 0.0076 2.6E-07 71.5 23.2 152 578-733 115-336 (571)
278 3qqz_A Putative uncharacterize 97.5 0.06 2.1E-06 56.7 27.3 208 449-729 19-250 (255)
279 3tc9_A Hypothetical hydrolase; 97.4 0.0071 2.4E-07 69.0 20.8 151 569-729 138-298 (430)
280 1w6s_A Methanol dehydrogenase 97.4 0.021 7.3E-07 67.9 25.6 150 580-733 123-343 (599)
281 2xe4_A Oligopeptidase B; hydro 97.4 0.0057 2E-07 75.0 20.9 192 569-772 175-398 (751)
282 4hw6_A Hypothetical protein, I 97.4 0.0093 3.2E-07 68.1 21.2 196 569-772 140-372 (433)
283 1flg_A Protein (quinoprotein e 97.4 0.0063 2.1E-07 72.3 20.4 85 629-721 465-549 (582)
284 3sov_A LRP-6, low-density lipo 97.3 0.058 2E-06 58.7 26.5 199 568-777 35-241 (318)
285 3sov_A LRP-6, low-density lipo 97.3 0.057 1.9E-06 58.8 26.1 179 587-775 12-198 (318)
286 3m0c_C LDL receptor, low-densi 97.3 0.099 3.4E-06 64.2 30.8 207 561-777 417-635 (791)
287 3amr_A 3-phytase; beta-propell 97.2 0.045 1.5E-06 60.2 23.6 182 579-773 41-262 (355)
288 3kya_A Putative phosphatase; s 97.2 0.097 3.3E-06 60.5 27.4 209 569-778 187-479 (496)
289 3ei3_A DNA damage-binding prot 97.2 1.1 3.7E-05 57.4 42.4 323 412-776 516-915 (1158)
290 2p9w_A MAL S 1 allergenic prot 97.2 0.044 1.5E-06 59.8 22.6 202 565-772 10-263 (334)
291 3m0c_C LDL receptor, low-densi 97.2 0.13 4.5E-06 63.1 29.5 182 586-776 402-591 (791)
292 3kya_A Putative phosphatase; s 97.1 0.053 1.8E-06 62.6 23.3 158 609-774 140-341 (496)
293 2xbg_A YCF48-like protein; pho 97.0 0.61 2.1E-05 50.6 31.4 152 565-729 160-319 (327)
294 3amr_A 3-phytase; beta-propell 96.9 0.098 3.4E-06 57.5 22.8 137 587-731 98-262 (355)
295 1n7d_A LDL receptor, low-densi 96.7 0.0028 9.6E-08 77.1 8.7 199 568-776 406-616 (699)
296 2p9w_A MAL S 1 allergenic prot 96.6 0.06 2E-06 58.7 18.1 167 607-774 12-215 (334)
297 3ei3_A DNA damage-binding prot 96.4 3.6 0.00012 52.6 37.9 174 586-774 713-955 (1158)
298 2ism_A Putative oxidoreductase 96.4 0.43 1.5E-05 52.5 24.0 55 456-514 30-85 (352)
299 3a9g_A Putative uncharacterize 96.4 1.5 5E-05 48.3 27.9 190 569-762 74-330 (354)
300 2xzh_A Clathrin heavy chain 1; 96.2 1.8 6.1E-05 47.0 28.5 228 576-817 75-334 (365)
301 1n7d_A LDL receptor, low-densi 96.1 0.011 3.9E-07 71.7 9.9 179 587-775 385-572 (699)
302 3sre_A PON1, serum paraoxonase 96.0 1.6 5.3E-05 48.2 25.3 183 569-764 51-287 (355)
303 3s94_A LRP-6, low-density lipo 96.0 4 0.00014 48.5 36.8 138 629-775 325-468 (619)
304 2ism_A Putative oxidoreductase 95.9 1.1 3.8E-05 49.1 24.0 98 567-667 30-152 (352)
305 3sre_A PON1, serum paraoxonase 95.8 0.71 2.4E-05 50.9 21.6 131 587-729 138-295 (355)
306 3ott_A Two-component system se 95.4 6.6 0.00023 47.4 37.3 314 417-775 152-503 (758)
307 1tl2_A L10, protein (tachylect 95.4 0.19 6.4E-06 51.6 13.5 181 580-775 6-209 (236)
308 1cru_A Protein (soluble quinop 95.2 5.8 0.0002 45.1 29.4 31 456-486 26-56 (454)
309 3s94_A LRP-6, low-density lipo 95.2 7.2 0.00025 46.2 38.0 196 568-775 349-552 (619)
310 3a9g_A Putative uncharacterize 95.1 4.1 0.00014 44.6 24.7 204 567-774 28-296 (354)
311 2g8s_A Glucose/sorbosone dehyd 95.0 5.3 0.00018 43.6 28.3 70 701-772 271-350 (353)
312 2vpj_A Kelch-like protein 12; 94.8 1.3 4.3E-05 46.8 19.1 182 579-775 64-279 (301)
313 3pbp_A Nucleoporin NUP82; beta 94.8 0.84 2.9E-05 51.3 17.8 148 619-770 31-208 (452)
314 2xn4_A Kelch-like protein 2; s 94.6 1.2 4.2E-05 47.0 18.6 182 579-775 63-277 (302)
315 3ii7_A Kelch-like protein 7; p 94.6 1.2 4.1E-05 47.2 18.4 182 579-775 57-273 (306)
316 3ott_A Two-component system se 94.5 12 0.0004 45.2 39.6 309 417-775 69-402 (758)
317 4a0p_A LRP6, LRP-6, low-densit 94.1 12 0.00042 44.3 43.5 158 608-775 340-509 (628)
318 4asc_A Kelch repeat and BTB do 93.6 2.5 8.4E-05 45.0 18.5 160 590-764 69-253 (315)
319 1bpo_A Protein (clathrin); cla 93.6 12 0.0004 42.3 27.7 231 430-685 85-336 (494)
320 2be1_A Serine/threonine-protei 93.4 10 0.00036 41.2 22.9 95 585-681 64-184 (339)
321 4a0p_A LRP6, LRP-6, low-densit 93.2 17 0.00059 43.0 40.7 199 568-777 340-552 (628)
322 3das_A Putative oxidoreductase 93.0 12 0.00042 40.8 28.4 36 453-488 28-63 (347)
323 1zgk_A Kelch-like ECH-associat 93.0 3 0.0001 44.3 17.8 171 588-774 90-287 (308)
324 2xzh_A Clathrin heavy chain 1; 92.7 13 0.00044 40.3 31.2 202 569-776 108-334 (365)
325 2vpj_A Kelch-like protein 12; 92.7 2.8 9.7E-05 44.1 17.0 173 588-775 31-232 (301)
326 2xn4_A Kelch-like protein 2; s 92.5 3.9 0.00013 43.1 17.8 173 588-775 30-230 (302)
327 3ii7_A Kelch-like protein 7; p 92.2 3.4 0.00012 43.6 16.9 179 581-775 15-226 (306)
328 2woz_A Kelch repeat and BTB do 91.8 5.1 0.00017 42.6 17.8 95 590-686 80-190 (318)
329 1cru_A Protein (soluble quinop 91.7 2.6 8.9E-05 48.0 16.0 108 608-719 27-161 (454)
330 2g8s_A Glucose/sorbosone dehyd 91.6 14 0.00047 40.3 21.3 64 604-667 267-340 (353)
331 3pbp_A Nucleoporin NUP82; beta 91.5 4.2 0.00014 45.7 16.7 139 586-728 39-208 (452)
332 1tl2_A L10, protein (tachylect 91.5 0.47 1.6E-05 48.6 8.4 101 569-675 42-158 (236)
333 4asc_A Kelch repeat and BTB do 91.3 9.1 0.00031 40.5 19.2 178 581-775 8-222 (315)
334 1xi4_A Clathrin heavy chain; a 91.0 6.6 0.00022 50.5 19.4 228 576-817 74-333 (1630)
335 1zgk_A Kelch-like ECH-associat 90.5 5.6 0.00019 42.1 16.5 173 588-775 39-241 (308)
336 2woz_A Kelch repeat and BTB do 89.7 18 0.0006 38.2 19.6 174 589-776 25-233 (318)
337 2be1_A Serine/threonine-protei 89.6 0.68 2.3E-05 50.7 8.2 112 578-689 10-139 (339)
338 3das_A Putative oxidoreductase 89.3 19 0.00063 39.4 19.5 115 646-763 28-159 (347)
339 2uvk_A YJHT; unknown function, 89.1 4.6 0.00016 43.6 14.6 94 588-684 86-232 (357)
340 3b7f_A Glycosyl hydrolase, BNR 88.1 24 0.00083 38.5 20.0 159 568-729 55-259 (394)
341 1bpo_A Protein (clathrin); cla 87.6 42 0.0014 37.9 33.2 223 551-777 89-334 (494)
342 3uc1_A DNA gyrase subunit A; D 86.2 19 0.00066 38.9 17.1 150 578-729 109-276 (327)
343 2zwa_A Leucine carboxyl methyl 85.4 26 0.0009 41.9 19.6 149 578-731 398-576 (695)
344 1xi4_A Clathrin heavy chain; a 83.3 26 0.0009 45.2 18.3 231 430-685 85-336 (1630)
345 3b7f_A Glycosyl hydrolase, BNR 79.8 73 0.0025 34.6 28.3 145 569-720 116-297 (394)
346 3s25_A Hypothetical 7-bladed b 79.6 47 0.0016 35.2 16.8 162 587-775 36-217 (302)
347 3qhy_B Beta-lactamase inhibito 79.6 63 0.0022 33.7 19.0 182 570-776 65-248 (282)
348 1suu_A DNA gyrase subunit A; t 75.9 86 0.003 33.3 22.6 104 577-681 113-232 (312)
349 3no0_A DNA gyrase subunit A; D 75.1 84 0.0029 32.8 20.6 201 569-775 25-247 (276)
350 2zwa_A Leucine carboxyl methyl 73.4 37 0.0013 40.6 15.3 103 579-682 453-579 (695)
351 2uvk_A YJHT; unknown function, 72.8 23 0.00077 38.0 12.2 88 579-670 21-128 (357)
352 3qhy_B Beta-lactamase inhibito 71.9 99 0.0034 32.2 19.0 219 569-814 25-245 (282)
353 3q6k_A 43.2 kDa salivary prote 69.4 1.4E+02 0.0047 32.8 23.9 172 589-761 124-341 (381)
354 1zi0_A DNA gyrase subunit A; b 69.3 1.2E+02 0.0041 32.1 21.6 152 577-730 108-275 (307)
355 3l6v_A GYRA, DNA gyrase subuni 69.2 1.4E+02 0.0047 32.7 23.0 104 578-682 113-267 (370)
356 2wg3_C Hedgehog-interacting pr 68.2 62 0.0021 36.6 14.8 115 650-765 14-160 (463)
357 3sbq_A Nitrous-oxide reductase 66.7 49 0.0017 38.4 13.2 141 631-775 299-479 (638)
358 1sqj_A OXG-RCBH, oligoxylogluc 62.6 1.5E+02 0.0052 35.8 17.8 162 607-768 14-195 (789)
359 3uc1_A DNA gyrase subunit A; D 62.0 1.7E+02 0.0058 31.3 22.3 195 579-775 54-280 (327)
360 2wg3_C Hedgehog-interacting pr 60.1 2.2E+02 0.0076 32.0 28.2 30 457-486 14-44 (463)
361 1wp5_A Topoisomerase IV; broke 59.6 1.9E+02 0.0063 30.9 24.5 197 578-775 50-278 (323)
362 4gq2_M Nucleoporin NUP120; bet 57.9 92 0.0031 38.7 14.9 38 609-647 237-274 (950)
363 3q6k_A 43.2 kDa salivary prote 57.9 2.2E+02 0.0075 31.2 20.0 143 631-774 124-306 (381)
364 4gq2_M Nucleoporin NUP120; bet 47.9 48 0.0016 41.3 9.9 37 569-605 237-274 (950)
365 3sbq_A Nitrous-oxide reductase 45.3 4.2E+02 0.014 30.8 18.5 194 580-774 144-408 (638)
366 3s25_A Hypothetical 7-bladed b 43.9 3E+02 0.01 28.7 23.5 115 555-681 136-256 (302)
367 1zvt_A Topoisomerase IV subuni 39.5 3.3E+02 0.011 27.8 15.0 151 621-776 3-165 (256)
368 3kci_A Probable E3 ubiquitin-p 36.6 4.3E+02 0.015 28.4 26.0 201 570-778 107-349 (389)
369 1zi0_A DNA gyrase subunit A; b 35.0 4.2E+02 0.014 27.8 22.1 197 577-775 52-278 (307)
370 2cn3_A Xyloglucanase, beta-1,4 35.0 6.3E+02 0.022 29.9 19.4 102 569-670 24-153 (737)
371 2cn3_A Xyloglucanase, beta-1,4 32.4 5.8E+02 0.02 30.2 15.9 114 609-722 24-153 (737)
372 4fhn_B Nucleoporin NUP120; pro 30.6 90 0.0031 39.6 8.6 39 609-648 239-277 (1139)
373 3a0f_A Xyloglucanase; beta-pro 28.3 8.2E+02 0.028 29.1 18.5 159 606-765 19-203 (763)
374 3no0_A DNA gyrase subunit A; D 27.0 5.3E+02 0.018 26.5 23.4 101 579-680 128-246 (276)
375 1suu_A DNA gyrase subunit A; t 26.1 5.8E+02 0.02 26.7 23.6 196 577-774 57-283 (312)
376 1sqj_A OXG-RCBH, oligoxylogluc 23.7 9.9E+02 0.034 28.5 20.3 156 567-727 14-196 (789)
377 3kci_A Probable E3 ubiquitin-p 23.3 7.1E+02 0.024 26.6 27.2 190 579-774 63-293 (389)
378 3mvd_K Regulator of chromosome 22.3 7.5E+02 0.026 26.6 28.7 114 608-729 75-204 (423)
379 1ex2_A Protein MAF; structural 22.3 29 0.001 34.3 1.5 18 77-94 8-25 (189)
380 3f7f_A Nucleoporin NUP120; nuc 20.8 1.1E+02 0.0037 36.6 6.1 37 609-648 223-259 (729)
381 3l6v_A GYRA, DNA gyrase subuni 20.6 8.1E+02 0.028 26.4 24.1 206 568-774 46-316 (370)
382 3f7f_A Nucleoporin NUP120; nuc 20.4 1.2E+02 0.0041 36.3 6.4 38 568-606 222-259 (729)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=7.4e-44 Score=430.33 Aligned_cols=461 Identities=14% Similarity=0.122 Sum_probs=335.7
Q ss_pred CCceeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 409 GGRRSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 409 ~g~~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
+....+....++..+ +.+. +..|++|+...... .+.|.+|.+.|++++|+|+|++||+|+.|++|+|||+.++
T Consensus 19 g~~~~~~~spdg~~l-~~~~-~~~v~l~~~~~~~~-----~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 19 GTAVVLGNTPAGDKI-QYCN-GTSVYTVPVGSLTD-----TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp TCCCCCEECTTSSEE-EEEE-TTEEEEEETTCSSC-----CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CceeEEeeCCCCCEE-EeCC-CCEEEEecCCCccc-----CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 444444444455444 3444 34899998765443 3566899999999999999999999999999999999765
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCC----ceeeecccccccccccccCcccccceEeecCCCceEEEc
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN----HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~ 564 (927)
+..... ...++...|..++|+|++..+++++.+. .+ .+|+ .++.+..+.
T Consensus 92 ~~~~~~---~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v-----------------------~~wd-~~~~~~~l~ 144 (611)
T 1nr0_A 92 THILKT---TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV-----------------------FLFD-TGTSNGNLT 144 (611)
T ss_dssp TCCEEE---EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE-----------------------EETT-TCCBCBCCC
T ss_pred cceeeE---eecccCCceEEEEECCCCCEEEEEECCCCceeEE-----------------------EEee-CCCCcceec
Confidence 432211 1245667899999999999988775442 22 2232 234556788
Q ss_pred cCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+|...|++++|+|+ . .|++++.|++|++||..+++++..+. |...|++++|+| ++++|++++.|++|++||+.+++
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCc
Confidence 99999999999998 3 59999999999999999998888887 999999999999 99999999999999999999988
Q ss_pred EEEec--------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc----------------------
Q 002407 642 VVDWN--------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL---------------------- 691 (927)
Q Consensus 642 ~v~~~--------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~---------------------- 691 (927)
.+..+ .|...|.+++|+|++++|++++.|++|++||+.+++....+....
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d 303 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN 303 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT
T ss_pred EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC
Confidence 87655 577899999999999999999999999999999887765442110
Q ss_pred ------------ccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEE
Q 002407 692 ------------QNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYV 758 (927)
Q Consensus 692 ------------~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~L 758 (927)
......+|...|++++|+|++. +|++++.|++|++||.......... ..+...+.+++|++++ .|
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~-~l 381 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DL 381 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CE
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC-cE
Confidence 0112347889999999999987 8999999999999997654333222 3467789999999776 68
Q ss_pred EEEECCCcEEEEECCCCCCccccc---ccceeeeeeeecC----------------------------CCeEEEEecCCc
Q 002407 759 VSASEDSYVYVWKYEAESRPSRSK---SITVTHSYEHFHC----------------------------QDVSVAIPWPGV 807 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s~~~~~~~~---~~~~~~~~~~~~~----------------------------~~v~vavs~~g~ 807 (927)
++++.|+.|++|++.......... ..........+.+ ....++++.+|.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 899999999999987653221000 0000000001111 112344555566
Q ss_pred eeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchh-hccc-----cc
Q 002407 808 GDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEK-LVLT-----AR 881 (927)
Q Consensus 808 ~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~-l~~~-----~~ 881 (927)
..+....++.+..|+........... .++ ...+..++|||++++|++++ .|+.+++|+... .... ..
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h--~~~v~~v~fspdg~~las~s----~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVH--PAEITSVAFSNNGAFLVATD----QSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EEC--SSCEEEEEECTTSSEEEEEE----TTSCEEEEEGGGTTEESCCCCCCC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCC--CCceEEEEECCCCCEEEEEc----CCCCEEEEEcCCCCceeeeeeeee
Confidence 66666666666666543321111111 111 13345678999999999987 889999999764 2211 12
Q ss_pred cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecC
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~ 921 (927)
|...+. +++|||||++||||+.||+||+|+..
T Consensus 535 H~~~V~--------~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 535 HTAKVA--------CVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp CSSCEE--------EEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccee--------EEEECCCCCEEEEEECCCcEEEEECC
Confidence 554444 47999999999999999999999953
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.4e-42 Score=406.27 Aligned_cols=448 Identities=21% Similarity=0.339 Sum_probs=336.3
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++++|..++.|++|+...+ +.++|.+|.+.|++|+|+|||++||+++.|++|+|||+. ++.+..+ .+
T Consensus 29 ~~las~~~d~~v~iWd~~~~------~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~~~~~~~-----~~ 96 (577)
T 2ymu_A 29 QTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-----TG 96 (577)
T ss_dssp SCEEEEETTSEEEEECTTSC------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-----CC
T ss_pred CEEEEEeCCCEEEEEECCCC------EEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-CCEEEEE-----EC
Confidence 45677788899999995322 346789999999999999999999999999999999964 4444443 46
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccc-------------------------------------------
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR------------------------------------------- 538 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~------------------------------------------- 538 (927)
+...|..++|+|++.+++++..++.+..+........
T Consensus 97 ~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (577)
T 2ymu_A 97 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 176 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeec
Confidence 7788999999999999999887776544332110000
Q ss_pred ---------cccccCc--cc-----ccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEE
Q 002407 539 ---------KSLSLDH--MV-----VPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCL 601 (927)
Q Consensus 539 ---------~~~~~~~--~~-----~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~ 601 (927)
.....+. +. ....+|+..++.+..+.+|...|.+++|+|+ .+|++++.|+.|++||.. ++.+
T Consensus 177 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~ 255 (577)
T 2ymu_A 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 255 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEE
T ss_pred cCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEE
Confidence 0000000 00 0124667778888899999999999999999 679999999999999975 4555
Q ss_pred EEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 602 KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 602 ~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
..+. |...|++++|+| ++++|++++.|+.|++|+...........|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~ 334 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 334 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 5555 999999999999 99999999999999999986655555667788999999999999999999999999999876
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
...... ..|...|++++|+|++. +|++++.|+.|++||.. .....+. .+...|.+++|+|++++|+
T Consensus 335 ~~~~~~----------~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~~~~~~~~--~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 335 QHLQTL----------TGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp CEEEEE----------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTCCEEEEEE--CCSSCEEEEEECTTSSCEE
T ss_pred CeeEEE----------eCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCCCCEEEEec--CCCCCeEEEEECCCCCEEE
Confidence 554322 47888999999999987 89999999999999953 3344444 3567899999999999999
Q ss_pred EEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCcceeccCCC
Q 002407 760 SASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNE 838 (927)
Q Consensus 760 sgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~ 838 (927)
+++.|+.|+||+... +.......+........|++++..++ .+.++.+.+|......+..+. ++.
T Consensus 402 ~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~-------------~~~ 467 (577)
T 2ymu_A 402 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT-------------GHS 467 (577)
T ss_dssp EEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE-------------CCS
T ss_pred EEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc-------------CCC
Confidence 999999999999643 32333333333333445555544433 344566666664443332221 111
Q ss_pred cccCcceeeecCCCCeEEEeccccccCccccccCchhhc--cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEE
Q 002407 839 DCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV--LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIR 916 (927)
Q Consensus 839 ~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~--~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~Ir 916 (927)
.....++|+|++++|++++ .|+.+++|+..... ...+|..++. +++|+|||++||||+.||.|+
T Consensus 468 --~~v~~~~~spd~~~las~~----~d~~i~iw~~~~~~~~~~~~h~~~v~--------~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 468 --SSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGHSSSVR--------GVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp --SCEEEEEECTTSCEEEEEE----TTSEEEEEETTSCEEEEEECCSSCEE--------EEEECTTSSCEEEEETTSEEE
T ss_pred --CCEEEEEEcCCCCEEEEEe----CCCEEEEEcCCCCEEEEEeCCCCCEE--------EEEEcCCCCEEEEEECcCEEE
Confidence 2234567999999999987 78899999865321 2345555554 468999999999999999999
Q ss_pred EeecCCCc
Q 002407 917 AYQNFGLP 924 (927)
Q Consensus 917 vW~~~glP 924 (927)
+|+..|.+
T Consensus 534 lwd~~~~~ 541 (577)
T 2ymu_A 534 LWNRNGQL 541 (577)
T ss_dssp EECTTSCE
T ss_pred EEeCCCCE
Confidence 99965543
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.1e-42 Score=413.59 Aligned_cols=433 Identities=17% Similarity=0.214 Sum_probs=322.3
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcCccccee
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKGEL 494 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D----gtVrVWdv~~~~~~~~l 494 (927)
....++++|..+++|++|+...++.. ...++.+|.+.|.+|+|+|+|++||+++.+ +.|++||. +.....
T Consensus 69 pdg~~lasg~~d~~v~lWd~~~~~~~---~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~- 142 (611)
T 1nr0_A 69 PSGYYCASGDVHGNVRIWDTTQTTHI---LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGN- 142 (611)
T ss_dssp TTSSEEEEEETTSEEEEEESSSTTCC---EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBC-
T ss_pred CCCcEEEEEeCCCCEEEeECCCCcce---eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcce-
Confidence 33467889999999999997654322 235678999999999999999999999875 46778874 433333
Q ss_pred ecccccCccccEEEEccCCCCC-eecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEE
Q 002407 495 LEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLD 572 (927)
Q Consensus 495 ~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~ 572 (927)
..+|...|..++|+|++. .+++++.++.+. +|+. ..+.+..+.+|...|++
T Consensus 143 ----l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~-----------------------lwd~~~~~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 143 ----LTGQARAMNSVDFKPSRPFRIISGSDDNTVA-----------------------IFEGPPFKFKSTFGEHTKFVHS 195 (611)
T ss_dssp ----CCCCSSCEEEEEECSSSSCEEEEEETTSCEE-----------------------EEETTTBEEEEEECCCSSCEEE
T ss_pred ----ecCCCCCceEEEECCCCCeEEEEEeCCCeEE-----------------------EEECCCCeEeeeeccccCceEE
Confidence 357888999999999986 588888888774 3333 23556788999999999
Q ss_pred EEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE--------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 573 LSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF--------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 573 l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~--------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
++|+|+ .+|++++.|++|+|||+.+++++..+ .|...|.+++|+| ++++|++++.|++|++||+.+++++
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcee
Confidence 999999 78999999999999999999998887 5899999999999 9999999999999999999887654
Q ss_pred Ee--------------------------------------------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 644 DW--------------------------------------------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 644 ~~--------------------------------------------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
.. ..|...|++++|+|+|++|++++.|+.|++||+.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence 31 2456789999999999999999999999999999
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce---------------EE--------
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV---------------HK-------- 736 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~---------------~~-------- 736 (927)
++.....+. ..|...|.+++|++++ .+++++.|+.|++|+..... ..
T Consensus 355 ~~~~~~~~~--------~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 355 TGISNRVFP--------DVHATMITGIKTTSKG--DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TCCEEECSS--------CSCSSCEEEEEECTTS--CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCceeeecc--------cCCcceEEEEEECCCC--cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 987655432 3688899999999865 58899999999999843210 00
Q ss_pred -----------------EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc-cccccceeeeeeeecCCCe
Q 002407 737 -----------------FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS-RSKSITVTHSYEHFHCQDV 798 (927)
Q Consensus 737 -----------------~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~-~~~~~~~~~~~~~~~~~~v 798 (927)
+....+...+.+++|+|||++|++|+.|+.|+||++.+..... ....+........|++++.
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence 0011123557899999999999999999999999997643210 0111222233344554443
Q ss_pred EEE-EecCCceeEEeecC-CceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhh
Q 002407 799 SVA-IPWPGVGDTWGLQD-TYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKL 876 (927)
Q Consensus 799 ~va-vs~~g~~~i~~~~d-~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l 876 (927)
.++ .+.++.+.+|.... ..+ .......+| ...+..++||||+++||+++ .|+.+++|+.+..
T Consensus 505 ~las~s~d~~v~~w~~~~~~~~----------~~~~~~~~H--~~~V~~v~fspdg~~lasgs----~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVANNFEL----------AHTNSWTFH--TAKVACVSWSPDNVRLATGS----LDNSVIVWNMNKP 568 (611)
T ss_dssp EEEEEETTSCEEEEEGGGTTEE----------SCCCCCCCC--SSCEEEEEECTTSSEEEEEE----TTSCEEEEETTCT
T ss_pred EEEEEcCCCCEEEEEcCCCCce----------eeeeeeeec--ccceeEEEECCCCCEEEEEE----CCCcEEEEECCCc
Confidence 333 33445555555433 111 000000111 13345578999999999987 8999999997642
Q ss_pred c-----ccccc-CCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 877 V-----LTARN-RSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 877 ~-----~~~~~-~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
. ...+| ...+. +++|+|+++ |+||+.||+||+|+.
T Consensus 569 ~~~~~~~~~~h~~~~v~--------~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 569 SDHPIIIKGAHAMSSVN--------SVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TSCCEEETTSSTTSCEE--------EEEEEETTE-EEEEETTSCEEEEEC
T ss_pred ccccchhhccCcccCee--------EEEEcCCCE-EEEecCCCCEEEEec
Confidence 1 22344 44443 468999999 999999999999983
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-39 Score=385.10 Aligned_cols=420 Identities=21% Similarity=0.353 Sum_probs=329.0
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+..+.....+++|..... ....+..|...|.++.|+|++++|++++.|+.|+||+.. ++....+ .+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~-----~~ 219 (577)
T 2ymu_A 152 QTIASASDDKTVKLWNRNGQ------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL-----TG 219 (577)
T ss_dssp SCEEEEETTSEEEEECTTSC------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE-----EC
T ss_pred ccceecccccceecccccee------eeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE-----ec
Confidence 34566677778888875433 234557899999999999999999999999999999964 3433333 45
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
+...+..++++|++..++++..++.+ .+|+...+.+..+.+|...|++++|+|+ ..
T Consensus 220 ~~~~v~~~~~s~dg~~l~~~~~d~~i-----------------------~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~ 276 (577)
T 2ymu_A 220 HSSSVRGVAFSPDGQTIASASDDKTV-----------------------KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQT 276 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSCE-----------------------EEECTTSCEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEE-----------------------EEEeCCCCEEEEEecCCCCEEEEEEcCCCCE
Confidence 67789999999999999998888776 5666677888899999999999999999 78
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP 659 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp 659 (927)
|++++.|++|++|+.. ++.+..+. |...|.+++|+| ++.+|++++.|+.|++||+....+.....+...+.+++|+|
T Consensus 277 l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~ 354 (577)
T 2ymu_A 277 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP 354 (577)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred EEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC
Confidence 9999999999999975 45555554 999999999999 99999999999999999998888777788889999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-cceEEEE
Q 002407 660 DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-DLVHKFK 738 (927)
Q Consensus 660 dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-~~~~~~~ 738 (927)
++++|++++.|+.|++||.. ++....+ ..|...|++++|+|++. +|++++.|+.|++||.. .....+.
T Consensus 355 ~g~~l~~~~~dg~v~~~~~~-~~~~~~~---------~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~~~~~~~~ 423 (577)
T 2ymu_A 355 DGQTIASASDDKTVKLWNRN-GQLLQTL---------TGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT 423 (577)
T ss_dssp TSSEEEEEETTSEEEEEETT-CCEEEEE---------ECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTCCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEcCC-CCEEEEe---------cCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCEEEEec
Confidence 99999999999999999964 4444432 47889999999999987 79999999999999953 3344444
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCc
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTY 817 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~ 817 (927)
. +...|.+++|+|++++|++++.|+.|++|++.. ........+........|++++..++ .+.++.+.+|...+..
T Consensus 424 ~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~ 500 (577)
T 2ymu_A 424 G--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 500 (577)
T ss_dssp C--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCE
T ss_pred C--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCE
Confidence 3 567899999999999999999999999999754 32333333333334455555544443 3445666666644433
Q ss_pred eeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhh--ccccccCCCceecccCCCC
Q 002407 818 LDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKL--VLTARNRSPRTSLDISNGI 895 (927)
Q Consensus 818 i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l--~~~~~~~s~v~s~~~~~~~ 895 (927)
+..+. ++. ..+..++|||++++|++++ .|+.+++|+.... ....+|..++.
T Consensus 501 ~~~~~-------------~h~--~~v~~l~~s~dg~~l~s~~----~dg~v~lwd~~~~~~~~~~~h~~~v~-------- 553 (577)
T 2ymu_A 501 LQTLT-------------GHS--SSVRGVAFSPDGQTIASAS----DDKTVKLWNRNGQLLQTLTGHSSSVW-------- 553 (577)
T ss_dssp EEEEE-------------CCS--SCEEEEEECTTSSCEEEEE----TTSEEEEECTTSCEEEEEECCSSCEE--------
T ss_pred EEEEe-------------CCC--CCEEEEEEcCCCCEEEEEE----CcCEEEEEeCCCCEEEEEcCCCCCEE--------
Confidence 33222 221 2334577999999999987 7899999986432 12346666665
Q ss_pred CcccCCCCCEEEEEcCCCcEEEee
Q 002407 896 SSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 896 ~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+++|+|||++|+||+.||+|++|+
T Consensus 554 ~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 554 GVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEeCCCEEEEeC
Confidence 468999999999999999999995
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-37 Score=366.88 Aligned_cols=436 Identities=13% Similarity=0.089 Sum_probs=308.5
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEEecCcC--------ccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGS-IWSIKFSL--DGRYLASAGEDCVIHVWQVVES--------ERK 491 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~-I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~--------~~~ 491 (927)
.++.+. ++.|++|+..++.- .....+.+.+|.+. |++++|+| ++++||+|+.||.|+||++.++ ...
T Consensus 32 ~l~~~~-~~~v~v~~~~~~~~-~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~ 109 (615)
T 1pgu_A 32 AIAYPC-GKSAFVRCLDDGDS-KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK 109 (615)
T ss_dssp EEEEEE-TTEEEEEECCSSCC-SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred EEEEec-CCeEEEEECCCCCC-ccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccccc
Confidence 333333 66899999875510 11234667899999 99999999 9999999999999999999755 222
Q ss_pred ceeecccccCccccEEEEccCCCCCeecccccC----CceeeecccccccccccccCcccccceEeecCCCceEEEccCC
Q 002407 492 GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD----NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (927)
Q Consensus 492 ~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~ 567 (927)
.. ...+...+..+.|+|++.+++++..+ +.+ .+|+ .++.+..+.+|.
T Consensus 110 ~~-----~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v-----------------------~~~d-~~~~~~~~~~~~ 160 (615)
T 1pgu_A 110 SE-----FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF-----------------------ISWD-SGNSLGEVSGHS 160 (615)
T ss_dssp EE-----EECCSSCEEEEEECTTSSEEEEEECCSSCSEEE-----------------------EETT-TCCEEEECCSCS
T ss_pred ch-----hhcccccEEEEEEeCCCCEEEEeccCCCCccEE-----------------------EEEE-CCCcceeeecCC
Confidence 22 23566789999999999999887655 222 2333 456778889999
Q ss_pred CCEEEEEecCCc--EEEEEeCCCcEEEEeCCCCcEEEEEe-cCC---ceEEEEEccCC-CCEEEEEECCCcEEEEeCCCC
Q 002407 568 DDVLDLSWSKSQ--HLLSSSMDKTVRLWHLSSKTCLKIFS-HSD---YVTCIQFNPVD-DRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 568 ~~V~~l~~spd~--~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~---~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~ 640 (927)
..|.+++|+|++ .|++++.|+.|++||+.+++++..+. |.. .|++++|+| + +++|++++.|+.|++||+.++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999994 79999999999999999999998887 888 899999999 7 999999999999999999999
Q ss_pred cEEEec-----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 641 QVVDWN-----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 641 ~~v~~~-----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+.+..+ .+...|.+++|+ ++.+|++++.|+.|++||+.+++....+.... ..+...+.++.|. ++. +
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~-~ 311 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-----QQLGNQQVGVVAT-GNG-R 311 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-----TCGGGCEEEEEEE-ETT-E
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-----CcccCceeEEEeC-CCC-e
Confidence 988876 778899999999 99999999999999999999988877654211 1234678888886 444 8
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecC
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHC 795 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~ 795 (927)
+++++.|+.|++||............+...|.+++| |+ |++++.||.|++|++.. .. ..+........+..
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~~---~~--~~~~~~v~~~~~~~ 382 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSSS---MH--QDHSNLIVSLDNSK 382 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTTE---EE--CCCCSCEEEEECCS
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEchh---hc--CcccCceEEEEECC
Confidence 999999999999997764444444445566777776 65 55555666666665430 00 00000011111111
Q ss_pred CCeEEEEecC---------------------------------------------------------------CceeEEe
Q 002407 796 QDVSVAIPWP---------------------------------------------------------------GVGDTWG 812 (927)
Q Consensus 796 ~~v~vavs~~---------------------------------------------------------------g~~~i~~ 812 (927)
....++...+ +...+..
T Consensus 383 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (615)
T 1pgu_A 383 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVG 462 (615)
T ss_dssp TTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEE
T ss_pred CcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEe
Confidence 1111111111 2222222
Q ss_pred ec-CCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc---cc-cCCCce
Q 002407 813 LQ-DTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT---AR-NRSPRT 887 (927)
Q Consensus 813 ~~-d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~---~~-~~s~v~ 887 (927)
.. ++.+..|+........ ..+.. .......++|+|++.+|++++ .|+.+.+|+....... .+ |..++.
T Consensus 463 ~~~d~~i~~~~~~~~~~~~-~~~~~--~~~~v~~~~~s~~g~~l~~~~----~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 535 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEVSF-DLKTP--LRAKPSYISISPSETYIAAGD----VMGKILLYDLQSREVKTSRWAFRTSKIN 535 (615)
T ss_dssp ETTTSCEEEEETTEEEEEE-ECSSC--CSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTTTEEEECCSCCCSSCEE
T ss_pred ecCCCeEEEEECCCccccc-cccCC--ccCceEEEEECCCCCEEEEcC----CCCeEEEeeCCCCcceeEeecCCCCcee
Confidence 22 4444444433221110 11111 123445678999999999987 7889999998644221 12 444444
Q ss_pred ecccCCCCCcccCC----------CCCEEEEEcCCCcEEEeecCC
Q 002407 888 SLDISNGISSSISA----------WGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 888 s~~~~~~~~~a~S~----------dG~vLvTgs~DG~IrvW~~~g 922 (927)
+++|+| ++++||||+.||+|++|+...
T Consensus 536 --------~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 536 --------AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp --------EEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred --------EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCC
Confidence 479999 999999999999999999543
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-37 Score=399.53 Aligned_cols=441 Identities=18% Similarity=0.251 Sum_probs=338.1
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.....++++|..+++|++|+..+++ ..+++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.+..+
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--- 695 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGE-----KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY--- 695 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCC-----EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE---
Confidence 3344567888999999999987664 34567899999999999999999999999999999999998877665
Q ss_pred cccCccccEEEEccCC--CCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEE
Q 002407 498 QEDGHLNMLLLANGSP--EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLS 574 (927)
Q Consensus 498 ~~~~~~~~v~~v~~sp--d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~ 574 (927)
.++...+.++.|++ +..++++++.++.+ .+|++ .++.+..+.+|.+.|++++
T Consensus 696 --~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v-----------------------~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 696 --DEHSEQVNCCHFTNKSNHLLLATGSNDFFL-----------------------KLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp --ECCSSCEEEEEECSSSSCCEEEEEETTSCE-----------------------EEEETTSSSEEEEECCCSSCEEEEE
T ss_pred --cCCCCcEEEEEEecCCCceEEEEEeCCCeE-----------------------EEEECCCcchhheecCCCCCEEEEE
Confidence 46778899999999 56678888888777 34444 3456778899999999999
Q ss_pred ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE-------------------------------------------------
Q 002407 575 WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF------------------------------------------------- 604 (927)
Q Consensus 575 ~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~------------------------------------------------- 604 (927)
|+|+ ..|++++.|++|++||+.+++....+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 9998 78999999999999998776543332
Q ss_pred -------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 605 -------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 605 -------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
.|...|.+++|+| ++.++++++.|+.|++||+.++..+. ...|...|++++|+|++++|++++.|+.|++|
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw 909 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ceeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3667899999999 99999999999999999999988775 45566899999999999999999999999999
Q ss_pred ECCCCeeeeeccc---------------------------c-cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 677 NTSENKLQQKSPI---------------------------N-LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 677 Dl~~~~~~~~~~i---------------------------~-~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
++.+......... . ........+...+++++|+|++. ++++++.+|.|++|
T Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~-~l~~g~~~g~i~i~ 988 (1249)
T 3sfz_A 910 ETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKII 988 (1249)
T ss_dssp EHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS-EEEEEETTSCCEEE
T ss_pred EccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC-EEEEEcCCCCEEEE
Confidence 9754211000000 0 00000112456799999999987 89999999999999
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCce
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVG 808 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~ 808 (927)
|............+...|.+++|+|++++|++++.||.|++|++.++.... ...+........+.+++..++.+.++.+
T Consensus 989 d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v 1067 (1249)
T 3sfz_A 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTV 1067 (1249)
T ss_dssp ETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEE
T ss_pred EcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCCcE
Confidence 976544444444567789999999999999999999999999999865432 2233333444556666667777777777
Q ss_pred eEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccccCCC
Q 002407 809 DTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TARNRSP 885 (927)
Q Consensus 809 ~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~~~s~ 885 (927)
.+|....+.... .+.++. .....++|+|++.+|++++ .|+.+.+|+...... ..+|..+
T Consensus 1068 ~vwd~~~~~~~~------------~~~~~~--~~v~~~~~s~d~~~l~s~s----~d~~v~iwd~~~~~~~~~l~~h~~~ 1129 (1249)
T 3sfz_A 1068 KVWNVITGRIER------------DFTCHQ--GTVLSCAISSDATKFSSTS----ADKTAKIWSFDLLSPLHELKGHNGC 1129 (1249)
T ss_dssp EEEETTTTCCCE------------EEECCS--SCCCCEEECSSSSSCEEEC----CSSCCCEECSSSSSCSBCCCCCSSC
T ss_pred EEEECCCCceeE------------EEcccC--CcEEEEEECCCCCEEEEEc----CCCcEEEEECCCcceeeeeccCCCc
Confidence 777765443211 111111 2344567999999999987 788999999764321 2344444
Q ss_pred ceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 886 RTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 886 v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+. +++|+|+|++||||+.||+|++|+.
T Consensus 1130 v~--------~~~~s~dg~~lat~~~dg~i~vwd~ 1156 (1249)
T 3sfz_A 1130 VR--------CSAFSLDGILLATGDDNGEIRIWNV 1156 (1249)
T ss_dssp EE--------EEEECSSSSEEEEEETTSCCCEEES
T ss_pred EE--------EEEECCCCCEEEEEeCCCEEEEEEC
Confidence 43 4799999999999999999999994
No 7
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=9.3e-37 Score=340.47 Aligned_cols=291 Identities=20% Similarity=0.314 Sum_probs=248.8
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.++|.+|.+.|++|+|+|++++|++|+.||+|+|||+.+++....+ ..+...+..++|+|++.++++++.++.+.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-----PLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----ECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-----ecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 4678999999999999999999999999999999999988766654 34567799999999999999998888774
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
.+...... ...+....+.+|.+.|.++.|++++.|++++.|++|++||+.+++++..+. |.
T Consensus 123 iw~~~~~~------------------~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~ 184 (340)
T 1got_B 123 IYNLKTRE------------------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT 184 (340)
T ss_dssp EEETTTCS------------------BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEECccCC------------------CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCC
Confidence 43321100 011345678899999999999999999999999999999999999998887 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..|.+++|+| ++++|++|+.|+.|++||+++++++.. ..|...|++++|+|++++|++|+.|+.|++||+++++....
T Consensus 185 ~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 185 GDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263 (340)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 9999999999 999999999999999999999887764 45678999999999999999999999999999998876655
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
+.. ..+...|++++|+|++. +|++++.|+.|++||............|...|.+++|+|+|++|++|+.|+.
T Consensus 264 ~~~-------~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 264 YSH-------DNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp ECC-------TTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred Ecc-------CCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 321 23445799999999987 8999999999999997654444444456788999999999999999999999
Q ss_pred EEEEE
Q 002407 767 VYVWK 771 (927)
Q Consensus 767 I~IWd 771 (927)
|+|||
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-36 Score=344.93 Aligned_cols=283 Identities=23% Similarity=0.383 Sum_probs=250.0
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+.+|.++|++|+|+|++++||+|+.||+|+|||+.+++....+ .+|...|..++|+|++.++++++.++.+.
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-----~~h~~~V~~v~~~~~~~~l~sgs~D~~i~- 175 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-----KGHTDSVQDISFDHSGKLLASCSADMTIK- 175 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-----CCCSSCEEEEEECTTSSEEEEEETTSCCC-
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----eccCCcEEEEEEcCCCCEEEEEeCCCeEE-
Confidence 457899999999999999999999999999999999998876665 56788999999999999999999988873
Q ss_pred ecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+|++. .+.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.++.++..+. |
T Consensus 176 ----------------------iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 176 ----------------------LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp ----------------------EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ----------------------EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 44443 3567788999999999999998 789999999999999999999998887 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCC--------------------CCEEE
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPD--------------------GQGAL 665 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spd--------------------g~~l~ 665 (927)
...|.++.|+| ++.+|++|+.|+.|++||+.++++.. +..|...|.+++|+|+ +.+|+
T Consensus 234 ~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 312 (410)
T 1vyh_C 234 REWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312 (410)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred CccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE
Confidence 99999999999 99999999999999999999988765 4466789999999996 67899
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCC
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNT 743 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~ 743 (927)
+|+.|+.|++||+.++.....+ .+|...|++++|+|++. +|++++.|+.|++||... ....+. .|.
T Consensus 313 sgs~D~~i~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~g~-~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~ 380 (410)
T 1vyh_C 313 SGSRDKTIKMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLN--AHE 380 (410)
T ss_dssp EEETTSEEEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSS-CEEEEETTTEEEEECCTTSCCCEEEE--CCS
T ss_pred EEeCCCeEEEEECCCCceEEEE---------ECCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEc--CCC
Confidence 9999999999999999877664 37889999999999887 799999999999999654 344444 456
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..|.+++|+|++.+|++|+.|+.|+||+++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 789999999999999999999999999864
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-35 Score=332.65 Aligned_cols=294 Identities=20% Similarity=0.291 Sum_probs=246.3
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.++|.+|.+.|++|+|+|++++||||+.||+|+|||..+++....+ ..+...+..++|+|++..+++++.++.+.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----TMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----ECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----ecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 3577999999999999999999999999999999999887766554 34556788999999999999999988875
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
.+........ ........+.+|...|.+++|+|+ ..|++++.|++|++||+.+++++..+. |
T Consensus 132 v~~~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 132 VYPLTFDKNE----------------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp EEECCCCTTC----------------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEeccccc----------------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence 5432210000 011345567789999999999998 689999999999999999999998887 9
Q ss_pred CCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 607 SDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 607 ~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
...|.+++|+|. ++++|++|+.|+.|++||+++++++..+ .|...|++++|+|++.+|++++.|++|++||++.....
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV 275 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 999999999883 3689999999999999999999887654 56689999999999999999999999999999988765
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
..+.. ..+...+++++|+|++. +|++++.|+.|+|||............|...|.+++|+|+|++|++|+.|
T Consensus 276 ~~~~~-------~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 276 AIYSK-------ESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp EEECC-------TTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEcC-------CCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 54321 23445789999999987 89999999999999976544444444567889999999999999999999
Q ss_pred CcEEEEE
Q 002407 765 SYVYVWK 771 (927)
Q Consensus 765 g~I~IWd 771 (927)
+.|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-35 Score=326.22 Aligned_cols=287 Identities=19% Similarity=0.327 Sum_probs=248.7
Q ss_pred eEeecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 450 QEIQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpd----G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+.+++|.+.|++|+|+|+ +.+||||+.|++|+||++........ ....+|...|.++.+++++.++++++.++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~---~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ---WSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE---EEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee---eeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 556899999999999985 67999999999999999977643222 12367888999999999999999999888
Q ss_pred ceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
.+ .+|++ .++.+..+..|...+.+++|+|+ .+|++++.|+.|++|++.+++....
T Consensus 103 ~i-----------------------~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 103 HI-----------------------RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EE-----------------------EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred cE-----------------------EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence 87 44554 34667788889999999999999 7899999999999999999998887
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
+. |...|.+++|+| ++++|++++.|+.|++||+.+++++..+ .+...|.+++|+|++++|++|+.|+.|++||++++
T Consensus 160 ~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 160 LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 76 888999999999 9999999999999999999999887654 46678999999999999999999999999999988
Q ss_pred eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 682 KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 682 ~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.....+ ..|...|++++|+|++. +|++++.|++|+|||............+...|.+++|+|++++|+++
T Consensus 239 ~~~~~~---------~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 239 NLAGTL---------SGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp CEEEEE---------CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ceeEEE---------cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 776654 47899999999999987 89999999999999987665555555667889999999999999999
Q ss_pred ECCCcEEEEECC
Q 002407 762 SEDSYVYVWKYE 773 (927)
Q Consensus 762 s~Dg~I~IWdl~ 773 (927)
+.|+.|+|||+.
T Consensus 309 ~~d~~i~vwd~p 320 (321)
T 3ow8_A 309 GDDQEIHIYDCP 320 (321)
T ss_dssp ETTCCEEEEECC
T ss_pred eCCCeEEEEeCC
Confidence 999999999963
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.1e-35 Score=377.71 Aligned_cols=458 Identities=19% Similarity=0.229 Sum_probs=339.7
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--DGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
....+++++..++.|++|+..+++. .+.+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.+++....+
T Consensus 667 ~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-- 739 (1249)
T 3sfz_A 667 SDDSYIATCSADKKVKIWDSATGKL-----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM-- 739 (1249)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE--
T ss_pred cCCCEEEEEeCCCeEEEEECCCCce-----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee--
Confidence 3345788899999999999876643 456789999999999999 5569999999999999999998876664
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeeccccccccccc-------------------------ccCccc----
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSL-------------------------SLDHMV---- 547 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~-------------------------~~~~~~---- 547 (927)
.+|...+..+.|+|++..+++++.++.+..+..........+ ..+...
T Consensus 740 ---~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 816 (1249)
T 3sfz_A 740 ---FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816 (1249)
T ss_dssp ---CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE
T ss_pred ---cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE
Confidence 467788999999999999999999998877754332111110 000000
Q ss_pred --ccceEeecC-CCceEEE-ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC
Q 002407 548 --VPETVFALS-DKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 548 --~~~~v~~~s-~k~i~~l-~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~ 621 (927)
....+|+.. +..+..+ .+|...|.+++|+|+ ..+++++.|+.|++||+.++..+..+. |...|++++|+| +++
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~ 895 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGS 895 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCC
Confidence 011233332 2333333 389999999999998 789999999999999999999888876 999999999999 999
Q ss_pred EEEEEECCCcEEEEeCCC--------------------------------------------------------------
Q 002407 622 YFISGSLDAKVRIWSIPE-------------------------------------------------------------- 639 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t-------------------------------------------------------------- 639 (927)
+|++++.|+.|++|++.+
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~ 975 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEY 975 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSE
T ss_pred EEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCE
Confidence 999999999999998532
Q ss_pred -----------------CcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC
Q 002407 640 -----------------RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 640 -----------------~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~ 701 (927)
++.+ ....|...|++++|+|++++|++++.||.|++||+.++..... ..|..
T Consensus 976 l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~ 1045 (1249)
T 3sfz_A 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL----------QAHQE 1045 (1249)
T ss_dssp EEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC----------BCCSS
T ss_pred EEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE----------ecCCC
Confidence 1111 1233556789999999999999999999999999999876643 37889
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.|.+++|+|++ .+++++.|+.|++||... ....+.. +...+.+++|+|++++|++++.|+.|++||+.++....
T Consensus 1046 ~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A 1046 TVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTC--HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp CEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEEC--CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB
T ss_pred cEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcc--cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee
Confidence 99999999965 689999999999999654 4444444 56778999999999999999999999999999887766
Q ss_pred cccccceeeeeeeecCCCeEEE-EecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEe
Q 002407 780 RSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSA 858 (927)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasa 858 (927)
....+........|++++..++ .+.+|.+.+|....+....... +........ .....+..++|||++.+|+++
T Consensus 1122 ~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~--~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA---PISVEEGTA--THGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC---CCC---------CCSCCCEEEECTTSSCEEEE
T ss_pred eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec---ccccccccc--ccCceEEEEEECCCCCEEEEC
Confidence 6655555555566666654444 4456777777655433211100 000000001 112345667899999999986
Q ss_pred ccccccCccccccCchhhccc---cccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 859 TNSYFFDRISATWPEEKLVLT---ARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 859 s~~~~~d~~v~~W~~e~l~~~---~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+ +.+.+|+....... ..|..++. +++|+|||++|++++.||.|++|+.
T Consensus 1197 ~------g~v~vwd~~~g~~~~~~~~~~~~i~--------~~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1197 G------GYLKWWNVATGDSSQTFYTNGTNLK--------KIHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp S------SSEEEBCSSSCBCCCCCCCSSCCCC--------CCEECSSSCCEEEECTTCCEEEECC
T ss_pred C------CeEEEEECCCCceeeeeeccCCccc--------EEEECCCCCEEEEecCCcEEEEEee
Confidence 4 68999997643221 12222222 5799999999999999999999983
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.9e-36 Score=338.86 Aligned_cols=308 Identities=19% Similarity=0.338 Sum_probs=250.8
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+.+.++|.+|.+.|++|+|+|++++||||+.|++|+|||+.+++....+ ..+...+..++|+|++.++++++.++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-----~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-----KLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-----ECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-----ecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 3455778999999999999999999999999999999999988776665 35667788999999999999999998
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKI 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~ 603 (927)
.+..+........ .........+.+|.+.|.++.|+|+ ..|++++.|++|++||+.+++++..
T Consensus 131 ~v~iw~~~~~~~~---------------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 131 ACSIFNLSSQADR---------------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CCEEEECCCCSSC---------------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred cEEEEECCCCccc---------------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence 8755433211000 0011234567899999999999996 5699999999999999999999888
Q ss_pred E------ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 604 F------SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 604 ~------~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
+ .|...|.+++|+|.++++|++|+.|+.|++||++. .+.+ .+..|...|++++|+|++++|++|+.|++|++
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~l 275 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEE
T ss_pred eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEE
Confidence 7 28889999999887889999999999999999974 3443 45667789999999999999999999999999
Q ss_pred EECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe----ecCCcceEEEEE
Q 002407 676 YNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG----FRNTNSQISASL 751 (927)
Q Consensus 676 wDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~----~~~~~~v~sv~f 751 (927)
||++++.....+.... .....+...|++++|+|++. +|++++.|+.|++||.......... ..|...|.+++|
T Consensus 276 wd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 276 FDMRTGHQLQVYNREP--DRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EETTTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EECCCCcEEEEecccc--cccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 9999998776653211 11122344589999999987 8999999999999996544333322 346778999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCC
Q 002407 752 TANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 752 spdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+|+|++|++|+.|+.|+||++....
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999998653
No 13
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-34 Score=317.77 Aligned_cols=256 Identities=15% Similarity=0.230 Sum_probs=218.6
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
..++|.+|.+.|++|+|+|++++||+|+.||+|+|||+.++..
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~------------------------------------- 47 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE------------------------------------- 47 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------------------------------
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------------------------------
Confidence 3467899999999999999999999999999999999876532
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
+..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+.
T Consensus 48 --------------------------------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 95 (304)
T 2ynn_A 48 --------------------------------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95 (304)
T ss_dssp --------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred --------------------------------eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC
Confidence 2345578899999999998 789999999999999999999998887
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-EEE-eccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCe
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-VVD-WNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-~v~-~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
|...|.+++|+| ++.+|++|+.|++|++||+.++. +.. ...|...|.+++|+| ++.+|++|+.|+.|++||+....
T Consensus 96 h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~ 174 (304)
T 2ynn_A 96 HPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (304)
T ss_dssp CSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred CCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999999999999 99999999999999999998874 333 456778999999999 67899999999999999998766
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCC-CCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPG-SSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspd-g~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
...... ..+...+..+.|.|. ...+|++++.|++|+|||............|...|..++|+|++++|+++
T Consensus 175 ~~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 175 PNFTLT--------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp CSEEEE--------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred ccceec--------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEE
Confidence 544332 356678999999873 22489999999999999987655555555567789999999999999999
Q ss_pred ECCCcEEEEECCCCCCcccc
Q 002407 762 SEDSYVYVWKYEAESRPSRS 781 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~ 781 (927)
+.||.|+|||+.+.+.....
T Consensus 247 s~Dg~i~iWd~~~~~~~~~~ 266 (304)
T 2ynn_A 247 SEDGTLKIWNSSTYKVEKTL 266 (304)
T ss_dssp ETTSCEEEEETTTCCEEEEE
T ss_pred cCCCeEEEEECCCCceeeec
Confidence 99999999999987654443
No 14
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-34 Score=343.82 Aligned_cols=437 Identities=16% Similarity=0.180 Sum_probs=320.2
Q ss_pred CCCeEEEccCceEEEEeccCccccc---ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcCcccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKG 492 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~---~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D----gtVrVWdv~~~~~~~ 492 (927)
...+++++..++.|++|+..++... .....+.+.+|...|.+++|+|++++|++++.+ +.|++|+ .++...
T Consensus 77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~ 154 (615)
T 1pgu_A 77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG 154 (615)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE
T ss_pred CCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce
Confidence 3456788888999999998644100 123446778999999999999999999999988 6888888 344333
Q ss_pred eeecccccCccccEEEEccCCCCC-eecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCC--
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD-- 568 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~-- 568 (927)
.+ .++...+..+.|+|++. .++++..++.+. +|+. ..+.+..+.+|..
T Consensus 155 ~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~-----------------------vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 155 EV-----SGHSQRINACHLKQSRPMRSMTVGDDGSVV-----------------------FYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp EC-----CSCSSCEEEEEECSSSSCEEEEEETTTEEE-----------------------EEETTTBEEEEEECSSSCTT
T ss_pred ee-----ecCCccEEEEEECCCCCcEEEEEeCCCcEE-----------------------EEeCCCcceeeeecccCCCC
Confidence 32 46778899999999987 788887887774 3333 2356778889999
Q ss_pred -CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE-----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 -DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 -~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~-----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.|++++|+|+ .+|++++.|+.|++||+.+++.+..+ .|...|.+++|+ ++.+|++++.|+.|++||+.++
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCC
Confidence 9999999998 46899999999999999999999998 799999999999 8899999999999999999999
Q ss_pred cEEEeccCC-----CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccc-----------------------
Q 002407 641 QVVDWNDLH-----EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----------------------- 692 (927)
Q Consensus 641 ~~v~~~~~~-----~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----------------------- 692 (927)
+.+..+..+ ..+.++.|. ++.++++++.++.|++||+.+++....+.....
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 285 KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWS 363 (615)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETT
T ss_pred cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEE
Confidence 887765544 678888885 899999999999999999988766544321000
Q ss_pred --cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce---------------------------------EEE
Q 002407 693 --NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV---------------------------------HKF 737 (927)
Q Consensus 693 --~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~---------------------------------~~~ 737 (927)
... ..|...|++++|.+ +. .|++++.|+.|++||..... ..+
T Consensus 364 ~~~~~-~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (615)
T 1pgu_A 364 SSSMH-QDHSNLIVSLDNSK-AQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 440 (615)
T ss_dssp TTEEE-CCCCSCEEEEECCS-TT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred chhhc-CcccCceEEEEECC-Cc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCcee
Confidence 000 34666777777733 33 68888888888888743210 111
Q ss_pred EeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCc-ccccccceeeeeeeecCCCeEEE-EecCCceeEEeec
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRP-SRSKSITVTHSYEHFHCQDVSVA-IPWPGVGDTWGLQ 814 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~-~~~~~~~~~~~~~~~~~~~v~va-vs~~g~~~i~~~~ 814 (927)
....+...+.+++|+ +++|++++. |+.|++|++.+.... .....+........|++++..++ ...++.+.+|...
T Consensus 441 ~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 441 KSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 112245678888888 889999999 999999999875432 22222333344455555544444 3355666666654
Q ss_pred CCceeeccccCCCCCcceeccCCCcccCcceeeecC----------CCCeEEEeccccccCccccccCchhh-c---ccc
Q 002407 815 DTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSP----------LNGTISSATNSYFFDRISATWPEEKL-V---LTA 880 (927)
Q Consensus 815 d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSP----------dg~~Lasas~~~~~d~~v~~W~~e~l-~---~~~ 880 (927)
....... +.+ .....+..++|+| ++.+|++++ .|+.+++|+.+.. . ...
T Consensus 519 ~~~~~~~------------~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~----~dg~i~iw~~~~~~~~~~~~~ 581 (615)
T 1pgu_A 519 SREVKTS------------RWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGS----LDTNIFIYSVKRPMKIIKALN 581 (615)
T ss_dssp TTEEEEC------------CSC-CCSSCEEEEEECCCC------CCSCCEEEEEE----TTSCEEEEESSCTTCCEEETT
T ss_pred CCcceeE------------eec-CCCCceeEEEEcCccccccccccCCCEEEEEc----CCCcEEEEECCCCceechhhh
Confidence 4332111 111 0113345578999 999999987 7899999998643 1 133
Q ss_pred ccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 881 RNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 881 ~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
+|..++. +++|+|+|+ |+|++.||+|++|+.
T Consensus 582 ~h~~~v~--------~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 582 AHKDGVN--------NLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp SSTTCEE--------EEEEEETTE-EEEEETTSCEEEEEE
T ss_pred cCccceE--------EEEEcCCCC-eEEecCCceEEEEee
Confidence 4555554 469999999 999999999999984
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-34 Score=320.85 Aligned_cols=255 Identities=22% Similarity=0.358 Sum_probs=208.2
Q ss_pred eeeeEeecCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecc
Q 002407 447 YKCQEIQAHNGSIWSIKF-----SL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSP 520 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vaf-----Sp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~ 520 (927)
...+.|.+|.+.|++|+| ++ ++++||||+.|++|+|||+.+.+....
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~--------------------------- 64 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY--------------------------- 64 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB---------------------------
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc---------------------------
Confidence 345678999999999999 77 999999999999999999865431110
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
.+.+...+.+|...|.+++|+|+ .+|++++.|++|+|||+.+++
T Consensus 65 -----------------------------------~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~ 109 (343)
T 2xzm_R 65 -----------------------------------FGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT 109 (343)
T ss_dssp -----------------------------------SEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC
T ss_pred -----------------------------------cccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 01234567899999999999998 789999999999999999999
Q ss_pred EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcEEEEEECCCC----------CEEE
Q 002407 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMVTAACYTPDG----------QGAL 665 (927)
Q Consensus 600 ~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V~sla~spdg----------~~l~ 665 (927)
++..+. |...|.+++|+| ++++|++++.|+.|++||+......... .+...|.+++|+|++ .+|+
T Consensus 110 ~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp EEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred EEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 988886 999999999999 9999999999999999999865544433 566789999999987 7999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcc
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNS 745 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~ 745 (927)
+++.|+.|++||.. ......+ ..|...|++++|+|++. +|++++.|+.|+|||................
T Consensus 189 s~~~d~~i~iwd~~-~~~~~~~---------~~h~~~v~~~~~s~~g~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 189 SVGWDGRLKVWNTN-FQIRYTF---------KAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp EEETTSEEEEEETT-TEEEEEE---------ECCSSCEEEEEECTTSS-EEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred EEcCCCEEEEEcCC-CceeEEE---------cCccccceEEEECCCCC-EEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 99999999999953 3433332 47889999999999987 8999999999999997332111111223456
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 746 QISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+.+++|+|++.+|+++ .|+.|+||++.+..
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 9999999999888765 57889999997643
No 16
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=359.88 Aligned_cols=455 Identities=12% Similarity=0.092 Sum_probs=310.9
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
.+....++++|..++.|++|+....+.. .. ..|...|++|+|+| |++||+++.|++|+|||+.+++.+..+.
T Consensus 25 fspdg~~lAsgs~Dg~I~lw~~~~~~~~-----~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~- 96 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGEVHIYGQQQVEVV-----IK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF- 96 (902)
T ss_dssp EETTTTEEEEEETTSEEEEECSTTCEEE-----EE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcEEE-----EE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-
Confidence 3334467889999999999987654331 12 35889999999999 8899999999999999999987766652
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
+...+.++.|+|++.+++++..++.+..+........ ...... ++ +....+.+|.+.|++++|+
T Consensus 97 -----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~------~~----~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 97 -----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDN------LQ----KSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp -----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECC------HH----HHHTCSSSCCCCCCEEEEE
T ss_pred -----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecc------cc----ccccccccCCCCeEEEEEc
Confidence 3357899999999999999999988855443221100 000000 00 0002346899999999999
Q ss_pred CC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-c------------------CCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 577 KS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-H------------------SDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 577 pd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h------------------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
|+ +.|++++.|++| +||+.+++++..+. | ...|++++|+| ++.+|++++.|+.|++|
T Consensus 161 p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEETTCCEEEE
T ss_pred cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Confidence 96 689999999999 99999999988876 3 37799999999 99999999999999999
Q ss_pred eCCCCcEEEe--c-----------------cCCCcEEEEEEC----CCC-CEEEEEECC-----CeEEEEECCC------
Q 002407 636 SIPERQVVDW--N-----------------DLHEMVTAACYT----PDG-QGALVGSYK-----GSCHLYNTSE------ 680 (927)
Q Consensus 636 Dl~t~~~v~~--~-----------------~~~~~V~sla~s----pdg-~~l~tgs~D-----g~I~IwDl~~------ 680 (927)
|+.+++++.. + .+...|++++|+ |++ .+|++|+.+ ..+.+|++..
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9999887653 1 123479999995 444 467777665 3788998531
Q ss_pred ------------CeeeeecccccccccccCCCCCeEEEEEcCC---------CCcEEEEEECCCcEEEEECCcceEEEE-
Q 002407 681 ------------NKLQQKSPINLQNKKKRSHQRKITGFQFAPG---------SSSEVLVTSADSRIRVVDGIDLVHKFK- 738 (927)
Q Consensus 681 ------------~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd---------g~~~Llsgs~Dg~I~VwD~~~~~~~~~- 738 (927)
.+....+. ..+...|..+++.++ +...+++++.|+.|++||.........
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFP--------LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEEC--------CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred cchhhhhhhhcCccceEEEe--------cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 11111111 135678889988762 233788889999999999633211110
Q ss_pred --------e--------------------------------ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 739 --------G--------------------------------FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 739 --------~--------------------------------~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
. ..+...+..++|+|++++|++|+.|++|++||+.++...
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~ 470 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCcccc
Confidence 0 011223344567899999999999999999999987432
Q ss_pred cc--c---------cccceeeeeeeecCCCeEEEE-ecCCceeEEeecCCceee--------------------------
Q 002407 779 SR--S---------KSITVTHSYEHFHCQDVSVAI-PWPGVGDTWGLQDTYLDE-------------------------- 820 (927)
Q Consensus 779 ~~--~---------~~~~~~~~~~~~~~~~v~vav-s~~g~~~i~~~~d~~i~~-------------------------- 820 (927)
.. . ..+........|++++..+|+ +.+|++.+|.........
T Consensus 471 ~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (902)
T 2oaj_A 471 DNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVL 550 (902)
T ss_dssp TTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSE
T ss_pred CCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccc
Confidence 10 0 022223455667766555553 566788888765442100
Q ss_pred --ccccCCC-----CCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc---------cccCC
Q 002407 821 --FSTANHP-----PTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT---------ARNRS 884 (927)
Q Consensus 821 --~~~~~~~-----~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~---------~~~~s 884 (927)
+.....+ ..+...+.++. ..+..++||||| +||+++ .|+.+++|+.+..... .+|..
T Consensus 551 ~~~~~~~~~~~~~g~~~~~~l~~h~--~~V~svafSpdG-~lAsgs----~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~ 623 (902)
T 2oaj_A 551 VDVRDRAPTGVRQGFMPSTAVHANK--GKTSAINNSNIG-FVGIAY----AAGSLMLIDRRGPAIIYMENIREISGAQSA 623 (902)
T ss_dssp EECGGGCCTTCSEEEEEEEEECCCS--CSEEEEEECBTS-EEEEEE----TTSEEEEEETTTTEEEEEEEGGGTCSSCCC
T ss_pred ccccccCCCCCCCccceeEEEEcCC--CcEEEEEecCCc-EEEEEe----CCCcEEEEECCCCeEEEEeehhHhcccccc
Confidence 0000000 01122233332 344567899999 999987 7899999997643221 14444
Q ss_pred CceecccCCCCCcccC-----CCC---CEEEEEcCCCcEEEeec
Q 002407 885 PRTSLDISNGISSSIS-----AWG---MVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 885 ~v~s~~~~~~~~~a~S-----~dG---~vLvTgs~DG~IrvW~~ 920 (927)
.+. +++|| ||| ++|++|+.||+|++|+.
T Consensus 624 ~V~--------sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 624 CVT--------CIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CEE--------EEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ceE--------EEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 444 46888 886 89999999999999985
No 17
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=323.11 Aligned_cols=307 Identities=19% Similarity=0.315 Sum_probs=240.2
Q ss_pred eeeeeEeecCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 446 LYKCQEIQAHNG-SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 446 l~~~q~L~gH~~-~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+.+.++|++|.+ .|++|+|+|+|++||+|+.|++|+||++.++...... ....+|...|..++|+|++.+|++++.+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~--~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS--VLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE--EECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee--eeccccCCcEEEEEECCCCCEEEEEECC
Confidence 345578899998 9999999999999999999999999999876533221 1135788899999999999999999988
Q ss_pred CceeeecccccccccccccCcccccceEeecCC---CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT- 599 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~---k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~- 599 (927)
+.+. +|+... +.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.++.
T Consensus 83 ~~v~-----------------------iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 83 ATTC-----------------------IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SCEE-----------------------EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CcEE-----------------------EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 8774 333322 346788999999999999998 789999999999999998764
Q ss_pred --EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE---EeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 600 --CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV---DWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 600 --~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v---~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
++..+. |...|.+++|+| ++.+|++++.|+.|++||+.+++.. ....|...|++++|+|+|++|++++.|++|
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeE
Confidence 344444 899999999999 9999999999999999999887533 455677899999999999999999999999
Q ss_pred EEEECCCCeeeeeccc-------ccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc------ceEEEE--
Q 002407 674 HLYNTSENKLQQKSPI-------NLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID------LVHKFK-- 738 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i-------~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~------~~~~~~-- 738 (927)
+||+............ .........|...|++++|+|++. .|++++.|+.|++|+... ....+.
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 9999643211100000 000000123788999999999887 799999999999998432 111111
Q ss_pred -eecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCCcc
Q 002407 739 -GFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 739 -~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
...|...|.+++|+|++ .+||+++.||.|+||++.+.+++.
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 12467789999999998 599999999999999999876554
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.7e-34 Score=316.73 Aligned_cols=295 Identities=20% Similarity=0.324 Sum_probs=239.6
Q ss_pred eeeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+....+|.+|.+.|++|+|+|++ ++|+||+.|++|++|++...............+|...+..+.++|++.++++++.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 34457889999999999999965 89999999999999998754332222222345788899999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK 602 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~ 602 (927)
+.+ .+|++ .++.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.......
T Consensus 87 ~~v-----------------------~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 87 KTL-----------------------RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT 143 (319)
T ss_dssp SEE-----------------------EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE
T ss_pred CEE-----------------------EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 888 45554 35667889999999999999998 789999999999999997554444
Q ss_pred EEecCCceEEEEEccC-----CCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 603 IFSHSDYVTCIQFNPV-----DDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 603 ~~~h~~~V~~v~fsp~-----dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
...|...|.+++|.|. ++.+|++++.|+.|++||+.+.++.. +..|...|.+++|+|++++|++++.||.|+||
T Consensus 144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iw 223 (319)
T 3frx_A 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223 (319)
T ss_dssp ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4459999999999983 23489999999999999999987765 55677899999999999999999999999999
Q ss_pred ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEee------cCCcceEE
Q 002407 677 NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGF------RNTNSQIS 748 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~------~~~~~v~s 748 (927)
|+.+++....+ .+...|.+++|+|++. +|++++ +..|++|+..... ..+... .+...+.+
T Consensus 224 d~~~~~~~~~~----------~~~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 224 NLAAKKAMYTL----------SAQDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp ETTTTEEEEEE----------ECCSCEEEEEECSSSS-EEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred ECCCCcEEEEe----------cCCCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 99998877664 2346799999999986 555555 5569999965432 222211 23456889
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++|+|||++|++|+.|+.|+||++.+.
T Consensus 292 ~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 292 LAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEECCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999999998753
No 19
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-34 Score=355.83 Aligned_cols=408 Identities=14% Similarity=0.140 Sum_probs=304.8
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
...+.|.+|.+.|++|+|+|+|++||+++.||.|+|||+.+++....+ ..+...+.++.|+|++..+++++.++.
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-----QVTETPVRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-----ECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-----ecCCCcEEEEEEeCCCCEEEEEeCCCe
Confidence 345678999999999999999999999999999999999998776665 367788999999999999999988887
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC-cEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK-TCLKI 603 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~-~~~~~ 603 (927)
+ .+|++ +++.+..+.+|.+.|++++|+|+ .+|++++.|++|++||+.++ .....
T Consensus 79 i-----------------------~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 135 (814)
T 3mkq_A 79 I-----------------------RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135 (814)
T ss_dssp E-----------------------EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred E-----------------------EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence 7 44544 45677888999999999999999 68999999999999999987 55666
Q ss_pred Ee-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccC-CCcEEEEEECC--CCCEEEEEECCCeEEEEEC
Q 002407 604 FS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDL-HEMVTAACYTP--DGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~-~~~V~sla~sp--dg~~l~tgs~Dg~I~IwDl 678 (927)
+. |...|.+++|+|.++++|++++.||.|++||+.++.... ...+ ...+.+++|+| ++.+|++++.||.|++||+
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEET
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 65 999999999999667899999999999999998766543 2333 37899999999 9999999999999999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC--
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-- 756 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-- 756 (927)
.+++....+ ..|...|++++|+|++. +|++++.|+.|++||............+...+.+++|+|++.
T Consensus 216 ~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 216 QTKSCVATL---------EGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp TTTEEEEEE---------ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred CCCcEEEEE---------cCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 998876654 36888999999999987 899999999999999765544444455567899999999987
Q ss_pred EEEEEECCCcEEEEECCCCCCcccccccc--ee--------------------------------eeeeeecCCCeEEEE
Q 002407 757 YVVSASEDSYVYVWKYEAESRPSRSKSIT--VT--------------------------------HSYEHFHCQDVSVAI 802 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~--~~--------------------------------~~~~~~~~~~v~vav 802 (927)
+++++ .++.+.+|++............. .. ............+++
T Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (814)
T 3mkq_A 286 YIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH 364 (814)
T ss_dssp EEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEE
T ss_pred EEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEE
Confidence 45555 46779999987643321110000 00 000000001123334
Q ss_pred ecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhcccccc
Q 002407 803 PWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARN 882 (927)
Q Consensus 803 s~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~ 882 (927)
+.+|...+... ++.+..|......... ......++|||++.+|+++. .++.+.+|.. ..+|
T Consensus 365 spdg~~la~~~-~~~~~i~~~~~~~~~~---------~~~i~~~~~spdg~~la~~~----~~g~v~l~~~-----~~~~ 425 (814)
T 3mkq_A 365 SPNGRFVTVVG-DGEYVIYTALAWRNKA---------FGKCQDFVWGPDSNSYALID----ETGQIKYYKN-----FKEV 425 (814)
T ss_dssp CTTSSEEEEEE-TTEEEEEETTTTEEEE---------EEECSEEEECTTSSCEEEEC----TTCCEEEEET-----TEEC
T ss_pred CCCCCEEEEec-CCEEEEEECccccccC---------CCceEEEEEeCCCCeEEEEe----CCCcEEEEEC-----CCCc
Confidence 44444333332 3344444321100000 02234578999999999976 6778888853 2233
Q ss_pred CCCceecccCCCCCcccCCCC---CEEEEEcCCCcEEEeec
Q 002407 883 RSPRTSLDISNGISSSISAWG---MVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 883 ~s~v~s~~~~~~~~~a~S~dG---~vLvTgs~DG~IrvW~~ 920 (927)
...+. +++|+|+| .+|++++.||+|++|+.
T Consensus 426 ~~~v~--------~~~~s~dg~~~~~l~~~~~d~~v~~~d~ 458 (814)
T 3mkq_A 426 TSWSV--------PMHSAIDRLFSGALLGVKSDGFVYFFDW 458 (814)
T ss_dssp TTCCC--------CCSSCCCEEECSSSEEEEETTEEEEECT
T ss_pred cceEE--------cCCcCccceecceEEEEecCCEEEEEEC
Confidence 33322 46899999 68999999999999983
No 20
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-34 Score=358.66 Aligned_cols=417 Identities=10% Similarity=0.044 Sum_probs=291.6
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
..+|.+.|++|+|+|++++||+|+.||+|+||+....+....+ .+...|..++|+| +.+|++++.++.+
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~------~~~~~V~~l~fsp-g~~L~S~s~D~~v---- 81 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL------EDRSAIKEMRFVK-GIYLVVINAKDTV---- 81 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC------SSCCCEEEEEEET-TTEEEEEETTCEE----
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc------CCCCCEEEEEEcC-CCEEEEEECcCeE----
Confidence 3589999999999999999999999999999998776543332 2456899999999 7788888888877
Q ss_pred ccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE------
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI------ 603 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~------ 603 (927)
.+|++. ++.+..+. |...|++++|+|+ .+|++|+.||+|++||+.++++...
T Consensus 82 -------------------~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 82 -------------------YVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -------------------EEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -------------------EEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc
Confidence 455553 35556664 7789999999999 8899999999999999998876411
Q ss_pred -----E-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC-------------------CcEEEEEEC
Q 002407 604 -----F-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH-------------------EMVTAACYT 658 (927)
Q Consensus 604 -----~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-------------------~~V~sla~s 658 (927)
+ .|...|++++|+|.+..+|++|+.|+.| +||+++++.+..+..+ ..|++++|+
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs 220 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH 220 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred ccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence 1 2788999999999446789999999999 9999999887655433 679999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccc---cccc-c-----ccCCCCCeEEEEEcC----CCCcEEEEEECC---
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPIN---LQNK-K-----KRSHQRKITGFQFAP----GSSSEVLVTSAD--- 722 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~---~~~~-~-----~~~h~~~Vtsl~fsp----dg~~~Llsgs~D--- 722 (927)
|+|++|++++.||.|++||+.+++.+....+. .... . ...+...|++++|++ ++..+|++++.+
T Consensus 221 pdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~ 300 (902)
T 2oaj_A 221 PNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG 300 (902)
T ss_dssp TTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence 99999999999999999999998776532110 0000 0 002455799999964 434567777666
Q ss_pred --CcEEEEECC--------------------cceEEEEeecCCcceEEEEEec----------CCCEEEEEECCCcEEEE
Q 002407 723 --SRIRVVDGI--------------------DLVHKFKGFRNTNSQISASLTA----------NGRYVVSASEDSYVYVW 770 (927)
Q Consensus 723 --g~I~VwD~~--------------------~~~~~~~~~~~~~~v~sv~fsp----------dg~~Lasgs~Dg~I~IW 770 (927)
..|.+|+.. .....+. ..+...+..+++.+ +...|++++.|+.|++|
T Consensus 301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP-LPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC-CSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe-cCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 378898832 1122222 12456788888765 34588999999999999
Q ss_pred ECCCCCCccc-------ccccceeee----------------------------------eeeecCCC-eEEEEecCCce
Q 002407 771 KYEAESRPSR-------SKSITVTHS----------------------------------YEHFHCQD-VSVAIPWPGVG 808 (927)
Q Consensus 771 dl~s~~~~~~-------~~~~~~~~~----------------------------------~~~~~~~~-v~vavs~~g~~ 808 (927)
++.++..... ...+..... ...|++++ ..+..++++++
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtV 459 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSV 459 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcE
Confidence 9976532111 000000000 01122222 34445566666
Q ss_pred eEEeecCCceeeccccCCCCCccee--cc---CCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhc------
Q 002407 809 DTWGLQDTYLDEFSTANHPPTPVEE--IS---GNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLV------ 877 (927)
Q Consensus 809 ~i~~~~d~~i~~~~~~~~~~~~~~~--l~---~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~------ 877 (927)
.+|+...+.+... .... +. +......+..++||||+++||+++ .|+.+++|+.....
T Consensus 460 rlWd~~~g~~~~~--------~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs----~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 460 RIYDASHGDIQDN--------ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI----ETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEESSCCTTTTT--------BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE----TTSCEEEEEEEECCC-----
T ss_pred EEEECCCccccCC--------ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe----cCcEEEEEEecCccccCccc
Confidence 7776655432100 0000 00 001123455678999999999988 88999999876331
Q ss_pred ------------------------------------------cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcE
Q 002407 878 ------------------------------------------LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEI 915 (927)
Q Consensus 878 ------------------------------------------~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~I 915 (927)
...+|..++. +++||||| +||+|+.||+|
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~--------svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS--------AINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE--------EEEECBTS-EEEEEETTSEE
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE--------EEEecCCc-EEEEEeCCCcE
Confidence 0112333333 57899999 99999999999
Q ss_pred EEeecCC
Q 002407 916 RAYQNFG 922 (927)
Q Consensus 916 rvW~~~g 922 (927)
|+|+.-+
T Consensus 599 ~lwd~~~ 605 (902)
T 2oaj_A 599 MLIDRRG 605 (902)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 9999655
No 21
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.2e-34 Score=326.29 Aligned_cols=315 Identities=19% Similarity=0.216 Sum_probs=232.5
Q ss_pred EEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCcCcccceeecc
Q 002407 424 SFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE------DCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 424 ~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~------DgtVrVWdv~~~~~~~~l~~~ 497 (927)
.+.+....+...|+.... ...+|++.|++|+|||||++||+|+. |+.|++|+..++.....+..
T Consensus 19 ~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~- 88 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVT---------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT- 88 (357)
T ss_dssp ------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-
T ss_pred EEecCCCccccccCCCCC---------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-
Confidence 344555667778875322 23579999999999999999999998 77899999887765444321
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
....+...|..++|+|++.+++++ .++.+..+....... .........+|...|++|+|+|
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l~~s-~dg~v~lWd~~~~~~------------------~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGILVAS-DSGAVELWEILEKES------------------LLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEEEEE-TTSCEEEC--------------------------CCCCEEECCCSSCEEEEEECS
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEE-CCCEEEEeeccccce------------------eEEEeeccCCCCCCEEEEEECC
Confidence 123456679999999998877654 566663332111000 0011234568999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcE
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMV 652 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V 652 (927)
+ .+|++++.|++|++||+.+++++..+. |...|++++|+|....+|++++.|+.|++||+++++.+... .+...+
T Consensus 150 dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v 229 (357)
T 4g56_B 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIP 229 (357)
T ss_dssp SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccc
Confidence 9 789999999999999999999999887 99999999999944468999999999999999998766433 345689
Q ss_pred EEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 653 TAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 653 ~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
++++|+|+ +.+|++|+.|+.|++||+++++....+ ..|...|++++|+|++..+|++++.|++|+|||..
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---------AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---------CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred cchhhhhcccceEEEeecccceeEEECCCCcEeEEE---------eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 99999997 568899999999999999988766554 47889999999999987789999999999999976
Q ss_pred cceEEEEeecCCcceEEEEEec-CCCEEEEEECCCcEEEEECCCCCC
Q 002407 732 DLVHKFKGFRNTNSQISASLTA-NGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 732 ~~~~~~~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
... .+....|...|.+++|+| ++++|++++.||.|++|++....+
T Consensus 301 ~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 301 FSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCc-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 543 233446788899999998 899999999999999999976543
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=316.87 Aligned_cols=250 Identities=20% Similarity=0.263 Sum_probs=208.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|...|.+|+|+|++ +|++|+.||+|+|||+.+++....+
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~-------------------------------------- 119 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVS-------------------------------------- 119 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEE--------------------------------------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEe--------------------------------------
Confidence 4578899999999985 7889999999999999876543221
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV 610 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V 610 (927)
...+.+|.+.|++|+|+|+ .+|++++.|++|+|||+.+++++..+. |...|
T Consensus 120 ---------------------------~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 120 ---------------------------KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp ---------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred ---------------------------eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 1234589999999999999 789999999999999999999999887 99999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc---CCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeee
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~---~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
++++|+|.+..+|++++.|++|++||+++++.+..+. +...+++++|+|+ +++|++|+.||.|+|||+++++.+..
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 9999999444689999999999999999988776543 3357999999994 57889999999999999999887765
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEECCC
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSASEDS 765 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs~Dg 765 (927)
+ ..|...|++++|+|++..+|++++.|++|+|||..... .+....|...|.+++|+|+++ +|++++.|+
T Consensus 253 ~---------~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 253 S---------AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp E---------ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-EEEECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred E---------cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 4 48899999999999987789999999999999975443 334456778899999999986 677999999
Q ss_pred cEEEEECCCCCCc
Q 002407 766 YVYVWKYEAESRP 778 (927)
Q Consensus 766 ~I~IWdl~s~~~~ 778 (927)
+|++|++.+...+
T Consensus 323 ~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 323 QVVHHVVPTEPLP 335 (344)
T ss_dssp CEEEEECCC----
T ss_pred eEEEEECCCCCCC
Confidence 9999999876543
No 23
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.6e-33 Score=305.18 Aligned_cols=288 Identities=23% Similarity=0.365 Sum_probs=243.2
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
...++.+|.+.|++++|+|+|++||+|+.||.|+||++.+++....+ .++...+..+.|+|++.++++++.++.+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-----SGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-----ccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34677899999999999999999999999999999999888765554 4677889999999999999999888877
Q ss_pred eeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.+|++ ..+.+..+.+|...|.+++|+|+ .+|++++.|++|++||+.+++++..+.
T Consensus 90 -----------------------~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 146 (312)
T 4ery_A 90 -----------------------KIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP 146 (312)
T ss_dssp -----------------------EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred -----------------------EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec
Confidence 34444 34667888999999999999998 789999999999999999999988887
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
|...|.+++|+| ++++|++++.|+.|++||+.+++.+... .+...+..++|+|++++|++++.|+.|++||+.+++
T Consensus 147 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 147 AHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 899999999999 9999999999999999999998876543 344689999999999999999999999999999988
Q ss_pred eeeecccccccccccCCCCCe--EEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEE
Q 002407 683 LQQKSPINLQNKKKRSHQRKI--TGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVS 760 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~V--tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Las 760 (927)
....+. .|...+ ....+.+.+..+|++++.|+.|++||............+...|.+++|+|++++|++
T Consensus 226 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 226 CLKTYT---------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EEEEEC---------SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEEE---------ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 776543 333322 223444444458999999999999997655444444456778999999999999999
Q ss_pred EE--CCCcEEEEECC
Q 002407 761 AS--EDSYVYVWKYE 773 (927)
Q Consensus 761 gs--~Dg~I~IWdl~ 773 (927)
++ .|+.|++|+.+
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 97 69999999974
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-33 Score=319.08 Aligned_cols=296 Identities=25% Similarity=0.351 Sum_probs=239.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc-------------CccccEEEEccCCCCCeecc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED-------------GHLNMLLLANGSPEPTSLSP 520 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~-------------~~~~~v~~v~~spd~~~la~ 520 (927)
+|.+.|++++|+|||++||+|+ +++++||++.+++....+...... .....+.+++|+|++.++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 789999999988776655321100 12234889999999999999
Q ss_pred cccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC
Q 002407 521 KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK 598 (927)
Q Consensus 521 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~ 598 (927)
+..++.+ .+|++. .+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.++
T Consensus 141 ~~~d~~i-----------------------~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 141 GAEDRLI-----------------------RIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp EETTSCE-----------------------EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EcCCCeE-----------------------EEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 9888887 445443 4567788999999999999998 78999999999999999999
Q ss_pred cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--------cCCCcEEEEEECCCCCEEEEEECC
Q 002407 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--------DLHEMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 599 ~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--------~~~~~V~sla~spdg~~l~tgs~D 670 (927)
++...+.+...+.+++|+|.++++|++|+.|+.|++||+.+++++..+ .|...|.+++|+|++++|++|+.|
T Consensus 198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 999999999999999999978899999999999999999998876543 466789999999999999999999
Q ss_pred CeEEEEECCCCeeeeecccc---cccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceE
Q 002407 671 GSCHLYNTSENKLQQKSPIN---LQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQI 747 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~---~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~ 747 (927)
+.|++||+.+.......... .......+|...|.+++|+|++. +|++++.|+.|++||............|...|.
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 99999999865432111000 00111247889999999999887 899999999999999765444444445677899
Q ss_pred EEEEec------CCCEEEEEECCCcEEEEECCC
Q 002407 748 SASLTA------NGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 748 sv~fsp------dg~~Lasgs~Dg~I~IWdl~s 774 (927)
+++|++ ++++|++|+.||.|+||++..
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999886 688999999999999999865
No 25
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.6e-33 Score=307.48 Aligned_cols=296 Identities=21% Similarity=0.325 Sum_probs=240.8
Q ss_pred eeeeEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
....+|+||++.|++|+|+|+ +++|||||.|++|+|||+.+.+...........+|...|..+.|+|++.+++++..++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 344678999999999999997 6899999999999999998876554443344567889999999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF 604 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~ 604 (927)
.+..+... ..........+...+..+.++++ ..|++++.|+.+++||+.........
T Consensus 109 ~i~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 109 TLRLWDLT----------------------TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EEEEEETT----------------------TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred cceEEeec----------------------ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence 77433221 22344556678888999999988 78999999999999999876654443
Q ss_pred e--cCCceEEEEEccCC-CCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 605 S--HSDYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 605 ~--h~~~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
. |...|.+++|++.. ..++++++.|+.|++||+.+++++.. ..+...|++++|+|++++|++|+.|+.|++||+.+
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence 2 88999999998832 35788999999999999999987764 45678999999999999999999999999999999
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE--EE-------eecCCcceEEEEE
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK--FK-------GFRNTNSQISASL 751 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~--~~-------~~~~~~~v~sv~f 751 (927)
.+.+..+ .+...|.+++|+|++ .+++++.|+.|+|||....... +. ...+...|.+++|
T Consensus 247 ~~~~~~~----------~~~~~v~~~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 247 GKHLYTL----------DGGDIINALCFSPNR--YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp TEEEEEE----------ECSSCEEEEEECSSS--SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred Cceeeee----------cCCceEEeeecCCCC--ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 8877654 345679999999976 4778888999999996543322 21 2245678999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCC
Q 002407 752 TANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 752 spdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+|+|++|++|+.||.|+|||++++.
T Consensus 315 s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 315 SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999875
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=312.36 Aligned_cols=305 Identities=18% Similarity=0.274 Sum_probs=226.1
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcc--cceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESER--KGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~--~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
...++|++|.+.|++++|+|+ +||+|+.|++|+||++..+.. ...+ ....|...|.+++|+|++.++++++.+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~---~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL---DETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEE---CTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE---ecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 345778999999999999998 999999999999999987532 1111 122377889999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCC----Cc
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSS----KT 599 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t----~~ 599 (927)
+.+..+....... .....+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.. .+
T Consensus 80 ~~v~iw~~~~~~~---------------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 80 STVSIWAKEESAD---------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp SCEEEEEC----------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCE
T ss_pred CcEEEEEcccCcC---------------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeE
Confidence 8885543211000 00123456788999999999999998 7899999999999999943 24
Q ss_pred EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC--cEEE-eccCCCcEEEEEECCC--CCEEEEEECCCeE
Q 002407 600 CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER--QVVD-WNDLHEMVTAACYTPD--GQGALVGSYKGSC 673 (927)
Q Consensus 600 ~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~--~~v~-~~~~~~~V~sla~spd--g~~l~tgs~Dg~I 673 (927)
++..+. |...|.+++|+| ++.+|++++.|++|++||+.++ +++. +..|...|.+++|+|+ +.+|++|+.|++|
T Consensus 145 ~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp EEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred EEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 566665 999999999999 9999999999999999998776 3443 4567789999999998 7789999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEE-eecCCc-ceEEE
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFK-GFRNTN-SQISA 749 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~-~~~~~~-~v~sv 749 (927)
++||+..+.................|...|++++|++++ +|++++.|+.|+|||..... .... ...+.. .+.++
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v 301 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV 301 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence 999986542100000000000012388899999999765 79999999999999964331 1111 123444 79999
Q ss_pred EEec--CCCEEEEEECCCcEEEEECCC
Q 002407 750 SLTA--NGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 750 ~fsp--dg~~Lasgs~Dg~I~IWdl~s 774 (927)
+|+| ++++|++++.||.|+||+++.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999 789999999999999999865
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=319.61 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=239.9
Q ss_pred ecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEec----CcCcc------cceeecccc-----cCccccEEEEccCCCCC
Q 002407 453 QAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQV----VESER------KGELLEKQE-----DGHLNMLLLANGSPEPT 516 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv----~~~~~------~~~l~~~~~-----~~~~~~v~~v~~spd~~ 516 (927)
..|.+.|++++|+|+|+ +||+|+.||.|+||++ .+++. ...+..... .++...+.+++|+|++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45779999999999999 9999999999999999 77763 333322111 12567899999999999
Q ss_pred eecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeC
Q 002407 517 SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHL 595 (927)
Q Consensus 517 ~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl 595 (927)
+++++..++.+ .+|+..++.+..+.+|...|.+++|+|+ .+|++++.|+.|++||+
T Consensus 122 ~l~~~~~dg~i-----------------------~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 122 SIVTGVENGEL-----------------------RLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178 (425)
T ss_dssp EEEEEETTSCE-----------------------EEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred EEEEEeCCCeE-----------------------EEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEEC
Confidence 99999888777 4566677888899999999999999998 78999999999999999
Q ss_pred CCCcEEEEEe-cCCc---------------eEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE-eccCCCcEEEEEEC
Q 002407 596 SSKTCLKIFS-HSDY---------------VTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD-WNDLHEMVTAACYT 658 (927)
Q Consensus 596 ~t~~~~~~~~-h~~~---------------V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~s 658 (927)
.+++.+..+. +... +.+++|+| + ..+++++.++.|++||+.+++.+. ...+...|.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp TTTEEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 9999988887 4444 99999998 5 568899999999999999987665 44667899999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEE
Q 002407 659 PDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFK 738 (927)
Q Consensus 659 pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~ 738 (927)
|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++ ++++++.|+.|++||.........
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNGNSQNCF---------YGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSBSCSEEE---------CCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccceEe---------cCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEe
Confidence 99999999999999999999987765554 3688899999999987 899999999999999876655555
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
...+...+.+++|+|++++|++++.||.|+||++.+..
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 55567789999999999999999999999999997643
No 28
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.1e-33 Score=342.68 Aligned_cols=419 Identities=14% Similarity=0.146 Sum_probs=312.5
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..++.|++|+..+++ ..+.+.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+ .
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-----~ 94 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-----E 94 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-----E
T ss_pred CCEEEEEeCCCEEEEEECCCCc-----eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----e
Confidence 3566777888999999977654 34567899999999999999999999999999999999998877665 4
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEEEccCCCCEEEEEecC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWSK- 577 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH~~~V~~l~~sp- 577 (927)
++...+..+.|+|++..++++..++.+. +|++.. .....+.+|...|.+++|+|
T Consensus 95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~-----------------------vw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 151 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVK-----------------------LWNWENNWALEQTFEGHEHFVMCVAFNPK 151 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEE-----------------------EEEGGGTSEEEEEEECCSSCEEEEEEETT
T ss_pred cCCCCEEEEEEeCCCCEEEEEcCCCEEE-----------------------EEECCCCceEEEEEcCCCCcEEEEEEEcC
Confidence 5778899999999999999998888774 333322 45667889999999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcE
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMV 652 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V 652 (927)
+ ..|++++.|++|++||+.++.....+. +...|.+++|+|. ++.+|++++.|+.|++||+.+++.+..+ .+...|
T Consensus 152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v 231 (814)
T 3mkq_A 152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231 (814)
T ss_dssp EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 5 689999999999999999887776665 4589999999973 6779999999999999999998877654 466899
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
.+++|+|++.+|++++.||.|++||+.+++....+ ..+...+.+++|+|++...+++++.++.+.+|+...
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL---------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE---------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 99999999999999999999999999998877664 367789999999999876667777788888888432
Q ss_pred ce----------EEEE---------------------------------eecCCcceEEEEEecCCCEEEEEECCCcEEE
Q 002407 733 LV----------HKFK---------------------------------GFRNTNSQISASLTANGRYVVSASEDSYVYV 769 (927)
Q Consensus 733 ~~----------~~~~---------------------------------~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I 769 (927)
.. .... ...+...+.+++|+|+|++|++++ |+.++|
T Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i 381 (814)
T 3mkq_A 303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVI 381 (814)
T ss_dssp CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEE
T ss_pred CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEE
Confidence 11 0000 011233467899999999999998 899999
Q ss_pred EECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeec
Q 002407 770 WKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNS 849 (927)
Q Consensus 770 Wdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fS 849 (927)
|++...... .........|+++ +...+....++.+..|.....+... ...+.|+
T Consensus 382 ~~~~~~~~~-----~~~~i~~~~~spd---------g~~la~~~~~g~v~l~~~~~~~~~~------------v~~~~~s 435 (814)
T 3mkq_A 382 YTALAWRNK-----AFGKCQDFVWGPD---------SNSYALIDETGQIKYYKNFKEVTSW------------SVPMHSA 435 (814)
T ss_dssp EETTTTEEE-----EEEECSEEEECTT---------SSCEEEECTTCCEEEEETTEECTTC------------CCCCSSC
T ss_pred EECcccccc-----CCCceEEEEEeCC---------CCeEEEEeCCCcEEEEECCCCccce------------EEcCCcC
Confidence 997542211 1111222334433 3333333334444444322222111 2234589
Q ss_pred CCC---CeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccCCCCCEEEEE------cCCCcEEEeec
Q 002407 850 PLN---GTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSISAWGMVIVTA------GLRGEIRAYQN 920 (927)
Q Consensus 850 Pdg---~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTg------s~DG~IrvW~~ 920 (927)
|++ ++|++++ .++.+.+|+.+..........+.. .++|+|||++|+++ +.++.+.+|.+
T Consensus 436 ~dg~~~~~l~~~~----~d~~v~~~d~~~~~~~~~~~~~~~--------~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~ 503 (814)
T 3mkq_A 436 IDRLFSGALLGVK----SDGFVYFFDWDNGTLVRRIDVNAK--------DVIWSDNGELVMIVNTNSNGDEASGYTLLFN 503 (814)
T ss_dssp CCEEECSSSEEEE----ETTEEEEECTTTCCEEEEESSCEE--------EEEECTTSSEEEEEECCCSSCSCSEEEEEEC
T ss_pred ccceecceEEEEe----cCCEEEEEECCcCcEEEEEecCCC--------EEEEcCCCCEEEEEEcCcccCCceEEEEEec
Confidence 998 6788766 688999999764322111111111 37899999999999 77777777764
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.9e-33 Score=309.68 Aligned_cols=286 Identities=15% Similarity=0.265 Sum_probs=235.4
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.+...++.+|.+.|++++|+|+ .+|++++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 4567789999999999999998 789999999999999999999988887 899999999999 9999999999999999
Q ss_pred EeCCCCc----EE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 635 WSIPERQ----VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 635 WDl~t~~----~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
|++.+.. .. ....|...|.++.|++++. +++++.|+.|++||+.+++....+ ..|...|++++|+
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~---------~~h~~~v~~~~~~ 193 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTF---------TGHTGDVMSLSLA 193 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEEC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEE---------cCCCCceEEEEEC
Confidence 9998753 22 3556778999999998875 889999999999999999877664 4788999999999
Q ss_pred CCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeee
Q 002407 710 PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHS 789 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~ 789 (927)
|++. +|++++.|+.|++||............+...|.+++|+|++++|++++.|+.|+|||+++......
T Consensus 194 ~~~~-~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--------- 263 (340)
T 1got_B 194 PDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--------- 263 (340)
T ss_dssp TTSS-EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---------
T ss_pred CCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE---------
Confidence 9886 899999999999999766544444445677899999999999999999999999999976421100
Q ss_pred eeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCcccc
Q 002407 790 YEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISA 869 (927)
Q Consensus 790 ~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~ 869 (927)
+... ... .....++|+|++.+|++++ .|+.+.
T Consensus 264 ---~~~~-----------------------------~~~------------~~v~~~~~s~~g~~l~~g~----~d~~i~ 295 (340)
T 1got_B 264 ---YSHD-----------------------------NII------------CGITSVSFSKSGRLLLAGY----DDFNCN 295 (340)
T ss_dssp ---ECCT-----------------------------TCC------------SCEEEEEECTTSSEEEEEE----TTSEEE
T ss_pred ---EccC-----------------------------Ccc------------cceEEEEECCCCCEEEEEC----CCCeEE
Confidence 0000 000 1123456999999999987 788999
Q ss_pred ccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 870 TWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 870 ~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
+|+..... ...+|..++. +++|+|+|++||||+.||+|++|+
T Consensus 296 vwd~~~~~~~~~~~~h~~~v~--------~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 296 VWDALKADRAGVLAGHDNRVS--------CLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEEECCSSCEE--------EEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcccCcEeeEeecCCCcEE--------EEEEcCCCCEEEEEcCCccEEecC
Confidence 99875432 2345666655 468999999999999999999995
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-32 Score=301.10 Aligned_cols=284 Identities=18% Similarity=0.304 Sum_probs=246.9
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
..+|.+.|++++|+|++++|++++ ||.|+||++.+++....+.......+...+..+.++|++.+++++..++.+.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--- 122 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS--- 122 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE---
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE---
Confidence 357999999999999999999999 9999999998876555443333346778899999999999999988887773
Q ss_pred ccccccccccccCcccccceEeecCC---CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSD---KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~---k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+|++.. .....+.+|...|.+++|+|+ .+|++++.|+.|++||+.+++.+..+. |
T Consensus 123 --------------------~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~ 182 (337)
T 1gxr_A 123 --------------------IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp --------------------EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred --------------------EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecc
Confidence 333332 245678889999999999998 789999999999999999999988887 8
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
...|.+++|+| ++++|++++.|+.|++||+.+++.+....+...+.+++|+|++++|++++.++.|++||+.+++....
T Consensus 183 ~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred cCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 99999999999 99999999999999999999999988888889999999999999999999999999999998765432
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
..|...|++++|+|++. +|++++.|+.|++||......... ..+...+.+++|+|++++|++++.||.
T Consensus 262 ----------~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 262 ----------HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp ----------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred ----------cCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCe
Confidence 47888999999999987 899999999999999765544433 335778999999999999999999999
Q ss_pred EEEEEC
Q 002407 767 VYVWKY 772 (927)
Q Consensus 767 I~IWdl 772 (927)
|++|++
T Consensus 330 i~iw~~ 335 (337)
T 1gxr_A 330 ATVYEV 335 (337)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=325.79 Aligned_cols=289 Identities=13% Similarity=0.168 Sum_probs=236.8
Q ss_pred CCCCEEEEEEcCCCC-EEEEE----------eCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc
Q 002407 455 HNGSIWSIKFSLDGR-YLASA----------GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 455 H~~~I~~vafSpdG~-~LaSg----------s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
|...|.+++|+|+|+ +||+| +.|+.|+||++.++.....+. ...+...+.+++|+|++.+++++..
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---SLQVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---CCCCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---EEecCCceEEEEECCCCCeEEEEcc
Confidence 345688999999997 99999 899999999998876432211 1245678999999999999999988
Q ss_pred CCceeeecccccccccccccCcccccceEeecCC-----CceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCC
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-----KPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLS 596 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-----k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~ 596 (927)
++.+. +|++.. +.+..+.+|...|++++|+|+ .+|++++.|++|++||+.
T Consensus 88 dg~v~-----------------------vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 88 NGSLE-----------------------LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp SSCEE-----------------------EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred CCeEE-----------------------EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 88773 444433 477888999999999999996 679999999999999999
Q ss_pred CCc------EEEEE----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-------CCcEEEEEECC
Q 002407 597 SKT------CLKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTP 659 (927)
Q Consensus 597 t~~------~~~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~sp 659 (927)
+++ ....+ .|...|.+++|+|..+.+|++++.|+.|++||+.+++.+..+.. ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 886 33332 38899999999993388999999999999999999988765554 57899999999
Q ss_pred CC-CEEEEEECCC---eEEEEECCCCe-eeeeccccccccccc-CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 660 DG-QGALVGSYKG---SCHLYNTSENK-LQQKSPINLQNKKKR-SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 660 dg-~~l~tgs~Dg---~I~IwDl~~~~-~~~~~~i~~~~~~~~-~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
++ .+|++++.++ .|++||++++. .... .. .|...|++++|+|.+..+|++++.|+.|++||....
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQT---------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 97 6899999998 99999999863 3222 13 688999999999933348999999999999997665
Q ss_pred eEEEEeecCCcceEEEEEecCC-CEEEEEECCCcEEEEECCCCCCc
Q 002407 734 VHKFKGFRNTNSQISASLTANG-RYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
........+...+.+++|+|++ .+|++++.|+.|+||++.+....
T Consensus 296 ~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 5444444567789999999999 89999999999999999886543
No 32
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-33 Score=320.32 Aligned_cols=283 Identities=15% Similarity=0.196 Sum_probs=236.7
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
....+.+|.+.|++++|+|+ .+|++|+.|++|+|||+.+++.+..+. |...|++++|+| ++++|++|+.|++|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence 34568899999999999998 889999999999999999999988887 999999999999 999999999999999999
Q ss_pred CCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 637 IPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 637 l~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+.+++++..+ .|...|.+++|+|++.+|++|+.|+.|++||+.++.....+ ..|...|.++.|+|++. +
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~---------~~h~~~v~~~~~~~~g~-~ 248 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---------TGHREWVRMVRPNQDGT-L 248 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEEEEECTTSS-E
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---------eCCCccEEEEEECCCCC-E
Confidence 9998887644 56679999999999999999999999999999998877664 37889999999999887 8
Q ss_pred EEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecC--------------------CCEEEEEECCCcEEEEECCCC
Q 002407 716 VLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTAN--------------------GRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspd--------------------g~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++++.|+.|++||............+...|.+++|+|+ +.+|++|+.|+.|+|||+.++
T Consensus 249 l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~ 328 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328 (410)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999997665554455556778999999996 679999999999999999764
Q ss_pred CCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeE
Q 002407 776 SRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTI 855 (927)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~L 855 (927)
..... + .+|.. .+..++|+|++.+|
T Consensus 329 ~~~~~------------~-------------------------------~~h~~------------~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 329 MCLMT------------L-------------------------------VGHDN------------WVRGVLFHSGGKFI 353 (410)
T ss_dssp EEEEE------------E-------------------------------ECCSS------------CEEEEEECSSSSCE
T ss_pred ceEEE------------E-------------------------------ECCCC------------cEEEEEEcCCCCEE
Confidence 21100 0 01111 12234599999999
Q ss_pred EEeccccccCccccccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 856 SSATNSYFFDRISATWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 856 asas~~~~~d~~v~~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
++++ .|+.+++|+..... ...+|...+. +++|+|++.+||||+.||+||+|+
T Consensus 354 ~s~s----~D~~i~vwd~~~~~~~~~~~~h~~~v~--------~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 354 LSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVT--------SLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEE----TTTEEEEECCTTSCCCEEEECCSSCEE--------EEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEe----CCCeEEEEECCCCceEEEEcCCCCcEE--------EEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9987 78999999976432 1334555544 469999999999999999999997
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-32 Score=299.93 Aligned_cols=269 Identities=19% Similarity=0.285 Sum_probs=224.2
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
..+++++..+++|++|+..++. ..+.+.+|...|.+++|+|++++|++|+.|++|+|||+.+++
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~----------- 88 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQV-----EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE----------- 88 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------
T ss_pred CCEEEEEcCCCcEEEEECCCCc-----eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCc-----------
Confidence 3567888899999999987654 346678999999999999999999999999999999987653
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
.+..+.+|.+.|++++|+|+ .
T Consensus 89 ----------------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~ 110 (304)
T 2ynn_A 89 ----------------------------------------------------------KVVDFEAHPDYIRSIAVHPTKP 110 (304)
T ss_dssp ----------------------------------------------------------EEEEEECCSSCEEEEEECSSSS
T ss_pred ----------------------------------------------------------EEEEEeCCCCcEEEEEEcCCCC
Confidence 23356689999999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAA 655 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sl 655 (927)
+|++++.|++|++||+.++. +...+. |...|.+++|+|.++.+|++|+.|++|++||+.+..... ...+...+..+
T Consensus 111 ~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~ 190 (304)
T 2ynn_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190 (304)
T ss_dssp EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence 89999999999999999874 445555 999999999999667899999999999999998765432 23445789999
Q ss_pred EECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 656 CYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 656 a~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+|+| ++.+|++|+.|+.|++||+++++++..+ ..|...|++++|+|+++ +|++++.|++|+|||....
T Consensus 191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~---------~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---------EGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE---------ECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee---------CCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC
Confidence 9987 7789999999999999999999887765 48899999999999987 8999999999999997654
Q ss_pred eEEEEeecCCcceEEEEEecCCC--EEEEEECCCcEEEEECCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGR--YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~--~Lasgs~Dg~I~IWdl~s 774 (927)
........+...+.+++|+|++. +|++|+.|| +.+|++..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 44444444567789999999875 577777555 88888865
No 34
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=312.86 Aligned_cols=295 Identities=16% Similarity=0.186 Sum_probs=222.5
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|...|.+++|+|||++|++++ |+++++||..... +. ..... +
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~----~~-~~~~~-----------~------------------- 70 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL----FK-DPCAA-----------P------------------- 70 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE----ES-SGGGT-----------T-------------------
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee----ec-ccccc-----------C-------------------
Confidence 35788899999999999999888 8899999742110 00 00000 0
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE-----ecC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF-----SHS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~-----~h~ 607 (927)
..........|...|.+++|+|++.|++++.||+|+|||+.+++++..+ .|.
T Consensus 71 -----------------------~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~ 127 (344)
T 4gqb_B 71 -----------------------NEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHD 127 (344)
T ss_dssp -----------------------CGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCS
T ss_pred -----------------------CcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCC
Confidence 0001112234677899999999999999999999999999998765433 389
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..|++|+|+| ++++|++|+.|++|++||+.+++++..+ .|...|++++|+|++. +|++++.|++|++||+++++...
T Consensus 128 ~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 206 (344)
T 4gqb_B 128 DIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS 206 (344)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE
T ss_pred CCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceee
Confidence 9999999999 9999999999999999999999887754 5678999999999885 78999999999999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC-CEEEEEECC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG-RYVVSASED 764 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~D 764 (927)
.+.. ..+...+++++|+|++..+|++++.|+.|+|||............|...|.+++|+|++ ++|++++.|
T Consensus 207 ~~~~-------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 207 QIGC-------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp ECC-----------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred eeec-------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence 5432 35667799999999887789999999999999976543333334457789999999998 589999999
Q ss_pred CcEEEEECCCCCCcccccccceeeeeeeecCCC--eEEEEecCCceeEEeecC
Q 002407 765 SYVYVWKYEAESRPSRSKSITVTHSYEHFHCQD--VSVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 765 g~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~--v~vavs~~g~~~i~~~~d 815 (927)
++|+|||+.+++. .....+........|++++ +.+..++++.+.+|.+..
T Consensus 280 ~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 280 CSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp SCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred CeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999999987653 2333444444555666543 233456667766666543
No 35
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.7e-32 Score=300.66 Aligned_cols=280 Identities=14% Similarity=0.250 Sum_probs=242.0
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+...++++|+.+++|++|+....+.......+.+.+|...|++++|+|+|++|++|+.|++|+|||+.+++....+
T Consensus 28 ~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~---- 103 (319)
T 3frx_A 28 GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF---- 103 (319)
T ss_dssp SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE----
Confidence 3456789999999999999876554444556789999999999999999999999999999999999998876665
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.+|...|.++.++|++.++++++.++.+ .+|++.++.+..+.+|...|.++.|+|.
T Consensus 104 -~~h~~~v~~~~~~~~~~~l~s~s~D~~i-----------------------~vwd~~~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 104 -VGHKSDVMSVDIDKKASMIISGSRDKTI-----------------------KVWTIKGQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp -ECCSSCEEEEEECTTSCEEEEEETTSCE-----------------------EEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred -ccCCCcEEEEEEcCCCCEEEEEeCCCeE-----------------------EEEECCCCeEEEEeccCCcEEEEEEccC
Confidence 4677889999999999999999999887 6777778888999999999999999985
Q ss_pred -------cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC
Q 002407 579 -------QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (927)
Q Consensus 579 -------~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~ 650 (927)
..|++++.|++|++||+.+.+....+. |...|.+++|+| ++++|++++.|+.|++||+.+++.+..+..+.
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 238 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 279999999999999999998887776 999999999999 99999999999999999999999988888888
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
.|.+++|+|++.+|++++.+ .+++|++.............. .....+...+.+++|+|++. +|++++.|+.|+|||.
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFA-GYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQV 315 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCT-TCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccc-ccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEE
Confidence 99999999999999888754 599999988776654432111 11124567899999999987 8999999999999995
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.3e-32 Score=307.03 Aligned_cols=274 Identities=16% Similarity=0.314 Sum_probs=218.0
Q ss_pred CCeEEEccCceEEEEeccCccccc--ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT--ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~--~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
..++++|+.+++|++|+....+.. .....+.+.+|...|++++|+|++.+|++|+.|++|+|||+.+++
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--------- 109 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT--------- 109 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC---------
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------
Confidence 356788999999999997654432 123456789999999999999999999999999999999986543
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
.+..+.+|...|.+++|+|+
T Consensus 110 ------------------------------------------------------------~~~~~~~h~~~v~~v~~sp~ 129 (343)
T 2xzm_R 110 ------------------------------------------------------------TYKRFVGHQSEVYSVAFSPD 129 (343)
T ss_dssp ------------------------------------------------------------EEEEEECCCSCEEEEEECSS
T ss_pred ------------------------------------------------------------EEEEEcCCCCcEEEEEECCC
Confidence 23355689999999999998
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCC----------CEEEEEECCCcEEEEeCCCCcEEE
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDD----------RYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg----------~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
.+|++++.|++|++||+......... .|...|.+++|+| ++ .+|++++.|+.|++||........
T Consensus 130 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 208 (343)
T 2xzm_R 130 NRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT 208 (343)
T ss_dssp TTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEE
T ss_pred CCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEE
Confidence 78999999999999999854433333 3888999999999 65 789999999999999965444445
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
...|...|.+++|+|+|++|++|+.|+.|++||+......... ..+...|.+++|+|++. +++++.|+.
T Consensus 209 ~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~---------~~~~~~v~~v~~sp~~~--~la~~~d~~ 277 (343)
T 2xzm_R 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE---------FDAGSTINQIAFNPKLQ--WVAVGTDQG 277 (343)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEE---------EECSSCEEEEEECSSSC--EEEEEESSC
T ss_pred EcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccccee---------ecCCCcEEEEEECCCCC--EEEEECCCC
Confidence 6677889999999999999999999999999999543221111 12445699999999875 455667889
Q ss_pred EEEEECCcc--eE--EEEe---------ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 725 IRVVDGIDL--VH--KFKG---------FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 725 I~VwD~~~~--~~--~~~~---------~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++||.... .. .+.. ..+...+.+++|+|+|++|++|+.||.|++|+++++
T Consensus 278 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 278 VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 999996432 11 2221 134567899999999999999999999999998753
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=308.95 Aligned_cols=316 Identities=14% Similarity=0.154 Sum_probs=252.2
Q ss_pred ecCCCCeEEEccCceEEEEecc----Ccccc-----cceeeeeEee------cCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 002407 417 TDDSQDVSFHGQERVRVRQYGK----SCKDL-----TALYKCQEIQ------AHNGSIWSIKFSLDGRYLASAGEDCVIH 481 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~----~s~~l-----~~l~~~q~L~------gH~~~I~~vafSpdG~~LaSgs~DgtVr 481 (927)
..++..++++|..++.|++|+. ..++. ........+. +|.+.|++|+|+|++++||+|+.||.|+
T Consensus 54 s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 133 (425)
T 1r5m_A 54 NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR 133 (425)
T ss_dssp CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 3444447888899999999998 66552 1111112222 2788999999999999999999999999
Q ss_pred EEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCce
Q 002407 482 VWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPI 560 (927)
Q Consensus 482 VWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i 560 (927)
||+ .+++....+ ..+...+..+.|+|++.+++++..++.+.. |++ .++.+
T Consensus 134 i~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i-----------------------wd~~~~~~~ 184 (425)
T 1r5m_A 134 LWN-KTGALLNVL-----NFHRAPIVSVKWNKDGTHIISMDVENVTIL-----------------------WNVISGTVM 184 (425)
T ss_dssp EEE-TTSCEEEEE-----CCCCSCEEEEEECTTSSEEEEEETTCCEEE-----------------------EETTTTEEE
T ss_pred EEe-CCCCeeeec-----cCCCccEEEEEECCCCCEEEEEecCCeEEE-----------------------EECCCCcEE
Confidence 999 445444443 467788999999999999999888887743 333 23445
Q ss_pred EEEccCCCC---------------EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEE
Q 002407 561 CSFQGHLDD---------------VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFI 624 (927)
Q Consensus 561 ~~l~gH~~~---------------V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~ 624 (927)
..+..|... +.++.|++++.+++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEEE
Confidence 555556555 999999999999999999999999999998887775 999999999999 999999
Q ss_pred EEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe
Q 002407 625 SGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 625 sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
+++.|+.|++||+.+++.+..+ .+...|.+++|+|++ +|++++.|+.|++||+.+++....+ ..|...|
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i 333 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS---------IVDGVPI 333 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE---------ECTTCCE
T ss_pred EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec---------ccCCccE
Confidence 9999999999999988766544 477899999999999 9999999999999999998877664 3678899
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCcce--------------------EEEEeecCCc--ceEEEEEecCCCEEEEE
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--------------------HKFKGFRNTN--SQISASLTANGRYVVSA 761 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--------------------~~~~~~~~~~--~v~sv~fspdg~~Lasg 761 (927)
++++|+|++. +|++++.|+.|++||..... .......+.. .|.+++|+|++++|+++
T Consensus 334 ~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 334 FAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999987 89999999999999965433 2223333333 89999999999999999
Q ss_pred ECCCcEEEEECC
Q 002407 762 SEDSYVYVWKYE 773 (927)
Q Consensus 762 s~Dg~I~IWdl~ 773 (927)
+.||.|+||+++
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999986
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-32 Score=304.56 Aligned_cols=288 Identities=17% Similarity=0.214 Sum_probs=235.1
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.+....+.+|.+.|++++|+|+ .+|++++.|++|+|||..+++....+. |...|.+++|+| ++.+|++++.|+.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEE
Confidence 3667889999999999999999 789999999999999999998888777 888999999999 9999999999999999
Q ss_pred EeCCCC-------cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 635 WSIPER-------QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 635 WDl~t~-------~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
|++... .......|...|.+++|+|++..|++++.|++|++||+.+++....+ ..|...|.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~---------~~h~~~v~~~~ 203 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF---------HGHGADVLCLD 203 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE---------ECCSSCEEEEE
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE---------cCCCCCeEEEE
Confidence 998643 23345567789999999999999999999999999999999877664 37889999999
Q ss_pred EcCCC-CcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 708 FAPGS-SSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 708 fspdg-~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
|+|.. ..+|++++.|+.|++||............+...|.+++|+|++.+|++++.|+.|+|||++......
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~------- 276 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA------- 276 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-------
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-------
Confidence 98853 2489999999999999976554444444567789999999999999999999999999997632100
Q ss_pred eeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCc
Q 002407 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDR 866 (927)
Q Consensus 787 ~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~ 866 (927)
.+... ... .....++|+|++.+|++++ .|+
T Consensus 277 -----~~~~~-----------------------------~~~------------~~~~~~~~s~~g~~l~~g~----~d~ 306 (354)
T 2pbi_B 277 -----IYSKE-----------------------------SII------------FGASSVDFSLSGRLLFAGY----NDY 306 (354)
T ss_dssp -----EECCT-----------------------------TCC------------SCEEEEEECTTSSEEEEEE----TTS
T ss_pred -----EEcCC-----------------------------Ccc------------cceeEEEEeCCCCEEEEEE----CCC
Confidence 00000 000 1123356999999999987 788
Q ss_pred cccccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEee
Q 002407 867 ISATWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 867 ~v~~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~ 919 (927)
.+++|+..+.. ...+|..++. +++|+|||++||||+.||+|++|.
T Consensus 307 ~i~vwd~~~~~~~~~l~~h~~~v~--------~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 TINVWDVLKGSRVSILFGHENRVS--------TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEE--------EEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEECCCCceEEEEECCCCcEE--------EEEECCCCCEEEEEcCCCCEEecC
Confidence 99999875332 2345665555 469999999999999999999995
No 39
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.9e-32 Score=300.42 Aligned_cols=268 Identities=16% Similarity=0.253 Sum_probs=233.0
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
...+++|+.+++|++|+...+.+ .....+.+|...|.+++|++++.+|++++.|++|+|||+.+++.+..+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~---~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~----- 119 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERL---DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSID----- 119 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEE---EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-----
T ss_pred CCEEEEEcCCCCEEEEECCCCCe---eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEe-----
Confidence 34688899999999999765533 2345689999999999999999999999999999999999988766653
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
.+...+..++|+|++.+++++..++.+. +|++ .++....+..|...|.+++|+|+
T Consensus 120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~-----------------------i~~~~~~~~~~~~~~~~~~v~~~~~spdg 176 (321)
T 3ow8_A 120 AGPVDAWTLAFSPDSQYLATGTHVGKVN-----------------------IFGVESGKKEYSLDTRGKFILSIAYSPDG 176 (321)
T ss_dssp CCTTCCCCEEECTTSSEEEEECTTSEEE-----------------------EEETTTCSEEEEEECSSSCEEEEEECTTS
T ss_pred CCCccEEEEEECCCCCEEEEEcCCCcEE-----------------------EEEcCCCceeEEecCCCceEEEEEECCCC
Confidence 3445567789999999999998888773 3333 34566778889999999999999
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla 656 (927)
.+|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++++.|+.|++||+++++++.. ..|...|.+++
T Consensus 177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 789999999999999999999998887 999999999999 999999999999999999999887764 45667899999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
|+|++++|++++.|+.|++||+.+++++..+ ..|...|++++|+|++. +|++++.|+.|+|||.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---------FDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEECTTSS-EEEEEETTCCEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---------cCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999887765 37889999999999887 8999999999999994
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.4e-32 Score=295.43 Aligned_cols=252 Identities=19% Similarity=0.265 Sum_probs=205.8
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+.+|.+.|++++|+|+|++||||+.|++|+||++....
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~---------------------------------------- 42 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET---------------------------------------- 42 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------------------
Confidence 3468999999999999999999999999999999985321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc--EEEEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT--CLKIF 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~--~~~~~ 604 (927)
.+.+..+.+|.+.|++++|+++ .+|++++.|++|+|||+.+++ .+..+
T Consensus 43 ---------------------------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 95 (297)
T 2pm7_B 43 ---------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH 95 (297)
T ss_dssp ---------------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred ---------------------------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence 0234567899999999999863 689999999999999999874 44445
Q ss_pred e-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCCc---EEEeccCCCcEEEEEECCC-------------CCEEE
Q 002407 605 S-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQ---VVDWNDLHEMVTAACYTPD-------------GQGAL 665 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~~---~v~~~~~~~~V~sla~spd-------------g~~l~ 665 (927)
. |...|.+++|+| + +.+|++++.|+.|++||++++. ......|...|.+++|+|+ +++|+
T Consensus 96 ~~h~~~v~~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~ 174 (297)
T 2pm7_B 96 AVHSASVNSVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (297)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE
T ss_pred ecCCCceeEEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE
Confidence 4 899999999999 5 7899999999999999998753 3345667789999999997 57999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcc----e-EEEE
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDL----V-HKFK 738 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~----~-~~~~ 738 (927)
+|+.|+.|+|||++++....... .....|...|++++|+|++ ..+|++++.|++|+|||.... . ..+.
T Consensus 175 sgs~D~~v~lwd~~~~~~~~~~~-----~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~ 249 (297)
T 2pm7_B 175 TGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK 249 (297)
T ss_dssp EEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred EEcCCCcEEEEEEcCCCceEEEE-----EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee
Confidence 99999999999998765211110 1124799999999999985 458999999999999996432 1 2222
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+...+.+++|+|+|++||+++.|+.|+||+...
T Consensus 250 ~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 234567899999999999999999999999999864
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=316.89 Aligned_cols=318 Identities=12% Similarity=0.152 Sum_probs=249.9
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC----cccceeecccccCcc
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES----ERKGELLEKQEDGHL 503 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~----~~~~~l~~~~~~~~~ 503 (927)
..++.|++|+....+..... +. ..|...|++++|+|++++||+|+.||.|+||++.+. +.... ...|.
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~--~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~-----~~~h~ 113 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPI--AS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMAR-----FSNHS 113 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCS--CC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEE-----CCCSS
T ss_pred CCCCeEEEEEccCCCCCcEE--EE-EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhh-----ccCCc
Confidence 78889999998876543211 22 358999999999999999999999999999999872 22222 24677
Q ss_pred ccEEEEccCCC-CCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cE
Q 002407 504 NMLLLANGSPE-PTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QH 580 (927)
Q Consensus 504 ~~v~~v~~spd-~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~ 580 (927)
..+.++.|+|+ +.+++++..++.+..+........... .....+..+.+|...|.+++|+|+ .+
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------------YTPLTPGQSMSSVDEVISLAWNQSLAHV 180 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------------CCCBCCCCSCCSSCCCCEEEECSSCTTE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------------ccccccccccCCCCCeeEEEeCCCCCcE
Confidence 88999999998 889999988888755443221100000 000011234679999999999997 57
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe-c------CCceEEEEEccCCCCEEEEEECCC---cEEEEeCCCC-cEEEec--c
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS-H------SDYVTCIQFNPVDDRYFISGSLDA---KVRIWSIPER-QVVDWN--D 647 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~-h------~~~V~~v~fsp~dg~~L~sgs~Dg---~I~IWDl~t~-~~v~~~--~ 647 (927)
|++++.|+.|++||+.+++.+..+. + ...|.+++|+|.+..+|++++.|+ .|++||++++ +.+..+ .
T Consensus 181 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~ 260 (416)
T 2pm9_A 181 FASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG 260 (416)
T ss_dssp EEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC
T ss_pred EEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC
Confidence 9999999999999999999988887 3 788999999993347999999999 9999999986 444444 4
Q ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 648 LHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 648 ~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
+...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+ ..|...|++++|+|+++.+|++++.|+.|+
T Consensus 261 ~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~---------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 261 HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF---------PARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE---------ECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee---------cCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 778999999999 9999999999999999999998877664 378889999999999866999999999999
Q ss_pred EEECCcceEEE-----------------Ee-----e-------------cCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 727 VVDGIDLVHKF-----------------KG-----F-------------RNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 727 VwD~~~~~~~~-----------------~~-----~-------------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
|||........ .. + .+...+..++|+|+|++|++++.|+.|+||+
T Consensus 332 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 332 VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp EEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred EEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 99954322100 00 0 0345566899999999999999999999999
Q ss_pred CCCC
Q 002407 772 YEAE 775 (927)
Q Consensus 772 l~s~ 775 (927)
+.++
T Consensus 412 ~~~~ 415 (416)
T 2pm9_A 412 PKIS 415 (416)
T ss_dssp CCCC
T ss_pred eccC
Confidence 9864
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=296.60 Aligned_cols=305 Identities=16% Similarity=0.213 Sum_probs=228.0
Q ss_pred CceEEEccCCC-CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE--EE--ecCCceEEEEEccCCCCEEEEEECCCc
Q 002407 558 KPICSFQGHLD-DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK--IF--SHSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 558 k~i~~l~gH~~-~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~--~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
+.+..+.+|.. .|++++|+|+ .+|++++.|++|+|||+.++.... .+ .|...|.+++|+| ++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCc
Confidence 45678889988 9999999999 789999999999999999886432 22 3999999999999 9999999999999
Q ss_pred EEEEeCCCCc--EE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 632 VRIWSIPERQ--VV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 632 I~IWDl~t~~--~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
|++|++..+. ++ ....|...|.+++|+|++++|++++.|+.|++||+..+....... ....|...|++++|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~------~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS------VLNSHTQDVKHVVW 158 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE------EECCCCSCEEEEEE
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE------EecCcCCCeEEEEE
Confidence 9999998764 33 355677899999999999999999999999999998764322111 12478899999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
+|++. +|++++.|+.|++||.... ........+...|.+++|+|+|++|++++.|+.|+||++............
T Consensus 159 ~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~-- 235 (345)
T 3fm0_A 159 HPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS-- 235 (345)
T ss_dssp CSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--
T ss_pred CCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee--
Confidence 99987 8999999999999995432 333344456788999999999999999999999999997543322111000
Q ss_pred eeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCc
Q 002407 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDR 866 (927)
Q Consensus 787 ~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~ 866 (927)
. ..... ..+ ..+. ..+. ..+..++|+|++..|++++ .|+
T Consensus 236 -~------~~~~~--------~~~--------~~~~--~~h~------------~~v~~v~~~~~~~~l~s~~----~d~ 274 (345)
T 3fm0_A 236 -G------SDPSW--------KCI--------CTLS--GFHS------------RTIYDIAWCQLTGALATAC----GDD 274 (345)
T ss_dssp ----------CEE--------EEE--------EEEC--SSCS------------SCEEEEEECTTTCCEEEEE----TTS
T ss_pred -c------cCCcc--------cee--------EEec--CCCC------------CcEEEEEEecCCCEEEEEe----CCC
Confidence 0 00000 000 0000 0011 1233467999999999987 788
Q ss_pred cccccCchhhcc------------ccccCCCceecccCCCCCcccCCCC-CEEEEEcCCCcEEEeecC
Q 002407 867 ISATWPEEKLVL------------TARNRSPRTSLDISNGISSSISAWG-MVIVTAGLRGEIRAYQNF 921 (927)
Q Consensus 867 ~v~~W~~e~l~~------------~~~~~s~v~s~~~~~~~~~a~S~dG-~vLvTgs~DG~IrvW~~~ 921 (927)
.+++|+...... ..+|...+. +++|+|++ .+||||+.||+|++|+.-
T Consensus 275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~--------~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN--------CVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEE--------EEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred eEEEEEeCCCCCcceeeEEEEeeecccccCcEe--------EeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 999997653210 123443333 57999998 599999999999999943
No 43
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.5e-32 Score=307.35 Aligned_cols=280 Identities=16% Similarity=0.194 Sum_probs=193.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.+.+.+++.|+.+.+ +.....|++.... ...|...|.+++|+|||.+|++++.+... .+. ..+
T Consensus 10 g~d~g~~~~~~~~~g-~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~-~wd--~~v---- 72 (357)
T 4g56_B 10 GVDLGTENLYFQSNG-SSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSR-TWG--GSI---- 72 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS-SCC--EEE----
T ss_pred CCCCCccceEEecCC-CccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCc-ccc--CeE----
Confidence 456667776655544 6778999875432 24577889999999999999998764321 000 000
Q ss_pred cccCcccccceEeec-----CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEE-----EecCCce
Q 002407 541 LSLDHMVVPETVFAL-----SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKI-----FSHSDYV 610 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~-----s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~-----~~h~~~V 610 (927)
.+|.. .........+|...|++++|+|++.+++++.|++|+|||+.+++.+.. ..|...|
T Consensus 73 ----------~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V 142 (357)
T 4g56_B 73 ----------WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV 142 (357)
T ss_dssp ----------EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCE
T ss_pred ----------EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCE
Confidence 11211 112334556799999999999999999999999999999998865432 2489999
Q ss_pred EEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecc
Q 002407 611 TCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 611 ~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
++|+|+| ++++|++++.|+.|++||+.+++++..+ .|...|++++|+|++. ++++++.|+.|++||+++++......
T Consensus 143 ~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~ 221 (357)
T 4g56_B 143 KTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID 221 (357)
T ss_dssp EEEEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC
T ss_pred EEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee
Confidence 9999999 9999999999999999999999887654 5668999999999875 78999999999999999887665443
Q ss_pred cccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCC-CEEEEEECCCcE
Q 002407 689 INLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANG-RYVVSASEDSYV 767 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg-~~Lasgs~Dg~I 767 (927)
. ..+...+++++|+|++..+|++++.|+.|++||............+...|.+++|+|++ ++|++++.|++|
T Consensus 222 ~-------~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 222 F-------CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp C-------TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred e-------ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 2 35677899999999987789999999999999976433333333456789999999987 589999999999
Q ss_pred EEEECCCC
Q 002407 768 YVWKYEAE 775 (927)
Q Consensus 768 ~IWdl~s~ 775 (927)
+|||++++
T Consensus 295 ~iwd~~~~ 302 (357)
T 4g56_B 295 AVLDADFS 302 (357)
T ss_dssp EEECTTSC
T ss_pred EEEECCCC
Confidence 99998753
No 44
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-31 Score=302.21 Aligned_cols=294 Identities=16% Similarity=0.167 Sum_probs=236.3
Q ss_pred eeeeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCC-CCCeecccccC
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSP-EPTSLSPKHLD 524 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~sp-d~~~la~~~~~ 524 (927)
...+.+.+|.+.|++|+|+|++ ++||+|+.||.|+|||+.+++....+. ..++...|..+.|+| ++.+++++..+
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ---GMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC---CCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee---cCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 3445678999999999999999 999999999999999999877655442 235778999999999 67889888888
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEccC---CCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH---LDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH---~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
+.+ .+|++..+.+..+..| ...|.+++|+|+ .+|++++.|+.|++||+. +++
T Consensus 141 ~~i-----------------------~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 196 (383)
T 3ei3_B 141 GAT-----------------------TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHE 196 (383)
T ss_dssp TEE-----------------------EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCE
T ss_pred CEE-----------------------EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCE
Confidence 877 4566666666666554 488999999998 889999999999999994 666
Q ss_pred EEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCC----CcEEEeccCCCcEEEEEECC-CCCEEEEEECCCeE
Q 002407 601 LKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPE----RQVVDWNDLHEMVTAACYTP-DGQGALVGSYKGSC 673 (927)
Q Consensus 601 ~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t----~~~v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I 673 (927)
+..+. |...|.+++|+| ++. +|++++.|+.|++||+.+ +.++....+...|.+++|+| ++++|++++.|+.|
T Consensus 197 ~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 66665 999999999999 777 999999999999999987 67777778889999999999 99999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCC----------CCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeec
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQ----------RKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFR 741 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~----------~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~ 741 (927)
++||+.++.....+.... .....|. ..+..++|+|++.. +++.|+.|+|||.. ..+..+..+.
T Consensus 276 ~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~~~~~~l~~~~ 350 (383)
T 3ei3_B 276 RVYSSYDWSKPDQIIIHP--HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSGGLVHQLRDPN 350 (383)
T ss_dssp EEEETTBTTSCSEEEECC--BCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTCCEEEEECBTT
T ss_pred EEEECCCCcccccccccc--ccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCCceeeeecCCC
Confidence 999999877654432110 0011122 34445666666642 66789999999964 4455555554
Q ss_pred CCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 742 NTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+...+..++|+|++++|++++ |+.|+||++++
T Consensus 351 ~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 566677789999999999997 99999999975
No 45
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-32 Score=310.78 Aligned_cols=299 Identities=15% Similarity=0.233 Sum_probs=234.7
Q ss_pred CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 557 DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.....++.+|.+.|++++|+|+ .+|++|+.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++|+.|+.|++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEE
Confidence 3566789999999999999999 789999999999999999999988887 999999999999 9999999999999999
Q ss_pred EeCCCCc-------E-EEeccCCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 635 WSIPERQ-------V-VDWNDLHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 635 WDl~t~~-------~-v~~~~~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
||+.+.. + .....|...+.++.|.|+ +..|++|+.|++|++||+.+++....+.... ...|...|.+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~ 210 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF----PSGHTADVLS 210 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS----SSSCCSCEEE
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc----CCCCccCeEE
Confidence 9987532 1 124566778999999996 4579999999999999999988776543211 2478899999
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECC---cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccc
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGI---DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~---~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
+.|.+.+..+|++++.|+.|++||.. .....+.+ |...|.+++|+|++++|++++.|++|+|||+.++......
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~- 287 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY- 287 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE-
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe-
Confidence 99988555699999999999999965 33444444 5677999999999999999999999999999874321100
Q ss_pred ccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecccc
Q 002407 783 SITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSY 862 (927)
Q Consensus 783 ~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~ 862 (927)
.. .... ... .......++|+|+|.+|++++
T Consensus 288 -----------~~------------------~~~~-------~~~-----------~~~~v~~~~~s~~g~~l~~g~--- 317 (380)
T 3iz6_a 288 -----------NR------------------EPDR-------NDN-----------ELPIVTSVAFSISGRLLFAGY--- 317 (380)
T ss_dssp -----------CC------------------CCSS-------SCC-----------SSCSCSEEEECSSSSEEEEEC---
T ss_pred -----------cc------------------cccc-------ccc-----------ccCceEEEEECCCCCEEEEEE---
Confidence 00 0000 000 001234567999999999987
Q ss_pred ccCccccccCchhhcc-------ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCC
Q 002407 863 FFDRISATWPEEKLVL-------TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFG 922 (927)
Q Consensus 863 ~~d~~v~~W~~e~l~~-------~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~g 922 (927)
.|+.+.+|+...... ..+|...+. +++|+|||++|+||+.||+|++|+.-|
T Consensus 318 -~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~--------~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 318 -SNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS--------CLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -TTSCEEEEETTTCCEEEEECCSCSSCCCCCC--------EEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -CCCCEEEEECCCCceEEEEecccCCCCCceE--------EEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 788999998653211 123444443 579999999999999999999999655
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-31 Score=302.43 Aligned_cols=295 Identities=12% Similarity=0.171 Sum_probs=239.5
Q ss_pred eeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc------ccceeecccccCccccEEEEccCCC----C--
Q 002407 448 KCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE------RKGELLEKQEDGHLNMLLLANGSPE----P-- 515 (927)
Q Consensus 448 ~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~------~~~~l~~~~~~~~~~~v~~v~~spd----~-- 515 (927)
..+.+.+|.+.|++|+|+| ++||+|+.||+|+||++.+++ ....+ ..+...|.++.|+|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-----FVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-----ECCTTCEEEEEEEEEEETTTEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-----ecCCCcEEEEEEecccccCCcc
Confidence 3466789999999999999 799999999999999999877 33332 367788999999999 8
Q ss_pred -CeecccccCCceeeecccccccccccccCcccccceEeecCC-Cc-----eEEEccC-----CCCEEEEEec----CC-
Q 002407 516 -TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KP-----ICSFQGH-----LDDVLDLSWS----KS- 578 (927)
Q Consensus 516 -~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~-----i~~l~gH-----~~~V~~l~~s----pd- 578 (927)
.+++++..++.+..+ ++.. +. +..+.+| ...|.+++|+ |+
T Consensus 81 ~~~l~s~~~dg~i~iw-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 137 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFY-----------------------RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL 137 (397)
T ss_dssp EEEEEEEETTSCEEEE-----------------------EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----
T ss_pred ccEEEEEcCCCCEEEE-----------------------EccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC
Confidence 899998888877433 3322 22 6778888 5999999999 88
Q ss_pred cE-EEEEeCCCcEEEEeCCC------CcEEE-----EEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 579 QH-LLSSSMDKTVRLWHLSS------KTCLK-----IFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 579 ~~-L~Sgs~DgtV~lWDl~t------~~~~~-----~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
.+ |++++.|+.|++||+.+ ++.+. .+. |...|.+++|+| ++ +|++++.|+.|++||++
T Consensus 138 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 138 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETT
T ss_pred ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECC
Confidence 77 99999999999999988 55544 442 788999999999 88 99999999999999999
Q ss_pred CCcEEEecc----C---CCcEEEEEECCCCCEEEEEECC---CeEEEEECCCCeeeeeccccccc----ccccCCCCCeE
Q 002407 639 ERQVVDWND----L---HEMVTAACYTPDGQGALVGSYK---GSCHLYNTSENKLQQKSPINLQN----KKKRSHQRKIT 704 (927)
Q Consensus 639 t~~~v~~~~----~---~~~V~sla~spdg~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~----~~~~~h~~~Vt 704 (927)
+++.+..+. + ...|.+++|+|++++|++++.| +.|++||+.+++....+...... .....|...|+
T Consensus 216 ~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 295 (397)
T 1sq9_A 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 295 (397)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEE
Confidence 988876555 4 7899999999999999999999 99999999998877665310000 00011889999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEee------cC---------------CcceEEEEEecCC--------
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGF------RN---------------TNSQISASLTANG-------- 755 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~------~~---------------~~~v~sv~fspdg-------- 755 (927)
+++|+|++. +|++++.|+.|+|||........... .+ ...|.+++|+|++
T Consensus 296 ~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~ 374 (397)
T 1sq9_A 296 SLSFNDSGE-TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGAD 374 (397)
T ss_dssp EEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCT
T ss_pred EEEECCCCC-EEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccc
Confidence 999999887 89999999999999976554444333 44 7889999999998
Q ss_pred --CEEEEEECCCcEEEEECCCC
Q 002407 756 --RYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 756 --~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++|++++.||.|+||++.++
T Consensus 375 ~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 375 LNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCEEEEEETTTEEEEEEEEC-
T ss_pred ccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999875
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-30 Score=287.87 Aligned_cols=289 Identities=15% Similarity=0.257 Sum_probs=243.4
Q ss_pred eeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
.....|.+|.+.|++|+|+|+|++||+|+.||.|+|||+.+++....+ ..+...+..+.|+|++.+++++..++.
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~dg~ 97 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-----DGHTGTIWSIDVDCFTKYCVTGSADYS 97 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-----hhcCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 444668999999999999999999999999999999999988876665 467788999999999999999988887
Q ss_pred eeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCC-----CcEEEEeCCCCc
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSSKT 599 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D-----gtV~lWDl~t~~ 599 (927)
+ .+|++. ++.+..+. |...|.+++|+|+ .+|++++.+ +.|++||+....
T Consensus 98 i-----------------------~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~ 153 (369)
T 3zwl_B 98 I-----------------------KLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153 (369)
T ss_dssp E-----------------------EEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred E-----------------------EEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence 7 445543 34555555 8899999999998 789999998 999999987653
Q ss_pred E-----------EEEE-ecCC--ceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEE-eccCCCcEEEEEECCCCCE
Q 002407 600 C-----------LKIF-SHSD--YVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVD-WNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 600 ~-----------~~~~-~h~~--~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~-~~~~~~~V~sla~spdg~~ 663 (927)
. +..+ .|.. .+.+++|+| ++++|++++.||.|++||+.+ .+.+. ...+...|.+++|+|++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE
Confidence 2 2222 2555 899999999 999999999999999999998 56555 4456789999999999999
Q ss_pred EEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC--------------cEEEEE
Q 002407 664 ALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--------------RIRVVD 729 (927)
Q Consensus 664 l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg--------------~I~VwD 729 (927)
|++++.|+.|++||+.+++....+ .+...+..++|+|++. ++++++.++ .|++||
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKY----------ETDCPLNTAVITPLKE-FIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECSSSS-EEEEEECCC-------------CEEEEEE
T ss_pred EEEecCCceEEEEECCCCceeeee----------cCCCCceeEEecCCCc-eEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999999999999999998877664 3667899999999987 788888887 899999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
............+...|.+++|+|++++|++++.||.|+||+++.+.
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 76555544555567889999999999999999999999999998753
No 48
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.8e-31 Score=322.82 Aligned_cols=289 Identities=22% Similarity=0.374 Sum_probs=235.2
Q ss_pred eeEeecCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDG-RYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG-~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
...|++|++.|++|+|+|++ ++|+||+.|++|+||++.+.............+|...|.++.++|++.++++++.++.+
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34678999999999999875 79999999999999999875443222223346788899999999999999999999888
Q ss_pred eeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEE-
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIF- 604 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~- 604 (927)
.+|++ .++.+..+.+|...|++++|+|+ .+|++++.|++|+|||+.........
T Consensus 455 -----------------------~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 455 -----------------------RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511 (694)
T ss_dssp -----------------------EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred -----------------------EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence 44554 34567788999999999999998 78999999999999998765444433
Q ss_pred ---ecCCceEEEEEccCCC--CEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Q 002407 605 ---SHSDYVTCIQFNPVDD--RYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNT 678 (927)
Q Consensus 605 ---~h~~~V~~v~fsp~dg--~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl 678 (927)
.|...|.+++|+| ++ .+|++++.|+.|++||+.++++... ..|...|++++|+|++++|++|+.||.|++||+
T Consensus 512 ~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~ 590 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590 (694)
T ss_dssp STTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEET
T ss_pred CCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 2888999999999 64 6899999999999999999887764 456789999999999999999999999999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEee----------------
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGF---------------- 740 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~---------------- 740 (927)
.+++.+..+ .+...|.+++|+|++. +++++.++.|+|||..... ..+..+
T Consensus 591 ~~~~~~~~~----------~~~~~v~~~~~sp~~~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 591 AEGKKLYSL----------EANSVIHALCFSPNRY--WLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp TTTEEEECC----------BCSSCEEEEEECSSSS--EEEEEETTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCCceEEEe----------cCCCcEEEEEEcCCCc--EEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 999876553 3456799999999874 4555667779999975433 222211
Q ss_pred -cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 741 -RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 741 -~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+...+.+++|+|+|++|++|+.||.|+||++.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 112246789999999999999999999999985
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-31 Score=284.36 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=239.2
Q ss_pred eeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 446 LYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 446 l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
....++|.+|.+.|++|+| |++++||+|+.||.|+|||+.++.....+ ..+...+..+.|+|++.+++++..++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-----YTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-----EECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-----ecCCccEEEEEECCCCCEEEEecCCC
Confidence 3455788999999999999 99999999999999999999887655554 34567899999999999999998888
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.+..+.... ....+++..+.+|...|.++.|. .+.|++++.|+.|++|| .++.+..+.
T Consensus 82 ~i~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~~~d--~~~~~~~~~ 139 (313)
T 3odt_A 82 MINGVPLFA-------------------TSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTAKVWK--EGSLVYNLQ 139 (313)
T ss_dssp CEEEEETTC-------------------CTTSCC-CEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEE--TTEEEEEEE
T ss_pred eEEEEEeee-------------------cCCCCcccchhhcccCEEEEEec-CCEEEEEeCCCCEEEEc--CCcEEEecc
Confidence 774332211 01235577888999999999993 47899999999999999 566666665
Q ss_pred -cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 606 -HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 606 -h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
|...|.+++|.|.++++|++++.|+.|++||...........+...+.+++|+|++. +++++.+|.|++||+.+++..
T Consensus 140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL 218 (313)
T ss_dssp CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE
T ss_pred cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh
Confidence 999999999998789999999999999999943322222233778999999999998 999999999999999998877
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
..+ ..|...|++++|+|++ .|++++.|+.|++||............+...+.+++|+|+++ +++++.|
T Consensus 219 ~~~---------~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 286 (313)
T 3odt_A 219 RTY---------EGHESFVYCIKLLPNG--DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSD 286 (313)
T ss_dssp EEE---------ECCSSCEEEEEECTTS--CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETT
T ss_pred hhh---------hcCCceEEEEEEecCC--CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCC
Confidence 664 3788999999999988 489999999999999765544444444567899999999998 5678999
Q ss_pred CcEEEEECCCCCCc
Q 002407 765 SYVYVWKYEAESRP 778 (927)
Q Consensus 765 g~I~IWdl~s~~~~ 778 (927)
|.|+||+++++...
T Consensus 287 g~i~iw~~~~~~~~ 300 (313)
T 3odt_A 287 NLVRIFSQEKSRWA 300 (313)
T ss_dssp SCEEEEESCGGGCC
T ss_pred CcEEEEeCCCCcee
Confidence 99999999876543
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=295.82 Aligned_cols=295 Identities=12% Similarity=0.148 Sum_probs=237.4
Q ss_pred eEeecCCCCEEEEEEcCCCCEE-EEEeC---CCcEEEEecCcCcccceeecccccCccccEEEEccCCC---CCeecccc
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYL-ASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE---PTSLSPKH 522 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~L-aSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd---~~~la~~~ 522 (927)
+.+++|.+.|++|+|+|++..| ++|+. |+.|+||++.+++...... ..+...+.++.|+|+ +.+++++.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE----IEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE----EEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee----ecccCcEEEEEEcCCCCCCceEEEec
Confidence 4557899999999999999655 55665 9999999999876544332 256678999999998 68999988
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCC-C-ceEEEccCCCCEEEEEe------cCC-cEEEEEeCCCcEEEE
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-K-PICSFQGHLDDVLDLSW------SKS-QHLLSSSMDKTVRLW 593 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k-~i~~l~gH~~~V~~l~~------spd-~~L~Sgs~DgtV~lW 593 (927)
.++.+. +|++.. + ++..+.+|...|.++.| +++ .+|++++.|++|++|
T Consensus 88 ~dg~i~-----------------------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 88 FGGNLH-----------------------IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp TTSCEE-----------------------EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred CCCeEE-----------------------EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 888773 444432 3 67888999999999965 566 689999999999999
Q ss_pred eCCCCc-EEEEEe-cC----CceEEEE----EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECC---C
Q 002407 594 HLSSKT-CLKIFS-HS----DYVTCIQ----FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTP---D 660 (927)
Q Consensus 594 Dl~t~~-~~~~~~-h~----~~V~~v~----fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~sp---d 660 (927)
|+.+++ .+..+. |. ..|.+++ |+| ++++|++++.|+.|++||+++++......+...|.+++|+| +
T Consensus 145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~ 223 (357)
T 3i2n_A 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDIS 223 (357)
T ss_dssp CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSS
T ss_pred eCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCC
Confidence 999887 666664 33 3899998 677 99999999999999999999999888888889999999999 9
Q ss_pred CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------
Q 002407 661 GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-------- 732 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-------- 732 (927)
+.+|++++.||.|++||+++++....+... ....|...|++++|+|++..+|++++.|+.|++||...
T Consensus 224 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 224 MNKLVATSLEGKFHVFDMRTQHPTKGFASV----SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp CCEEEEEESTTEEEEEEEEEEETTTEEEEE----EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCEEEEECCCCeEEEEeCcCCCcccceeee----ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 999999999999999999876544332211 12378899999999999876899999999999999532
Q ss_pred -----------ceEEEEeecCCcceEEEEEecCCCEEE-EEECCCcEEEEECCCCC
Q 002407 733 -----------LVHKFKGFRNTNSQISASLTANGRYVV-SASEDSYVYVWKYEAES 776 (927)
Q Consensus 733 -----------~~~~~~~~~~~~~v~sv~fspdg~~La-sgs~Dg~I~IWdl~s~~ 776 (927)
.........+...|.+++|+|++++|+ +++.|+.|+||++.+..
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 122333344577899999999999998 89999999999998754
No 51
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.8e-32 Score=298.33 Aligned_cols=296 Identities=13% Similarity=0.190 Sum_probs=238.8
Q ss_pred eecCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCC----CCeeccccc
Q 002407 452 IQAHNGSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPE----PTSLSPKHL 523 (927)
Q Consensus 452 L~gH~~~I~~vafSpd----G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd----~~~la~~~~ 523 (927)
+.+|.+.|++|+|+|+ ..++++++.++.|+||++.+++.+..+.......+...+.+++|+|+ +.+++++..
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3589999999999984 44666666677999999998877766654444456678999999998 668888888
Q ss_pred CCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcE
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTC 600 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~ 600 (927)
++.+ .+|++ ..+.+..+.+|...|++++|+| + .+|++++.|++|++||+.+++.
T Consensus 94 dg~i-----------------------~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 94 RGII-----------------------RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp TCEE-----------------------EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred CCEE-----------------------EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 8877 34443 3567788899999999999999 6 7899999999999999999999
Q ss_pred EEEE----ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-----------------------------c
Q 002407 601 LKIF----SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-----------------------------D 647 (927)
Q Consensus 601 ~~~~----~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-----------------------------~ 647 (927)
+..+ .|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+ .
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 9888 4999999999999 9999999999999999999886543221 2
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc-----cccccccCCCCCeEEEEEcCC--CCcEEEEEE
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-----LQNKKKRSHQRKITGFQFAPG--SSSEVLVTS 720 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~-----~~~~~~~~h~~~Vtsl~fspd--g~~~Llsgs 720 (927)
+...|.+++|+ +++|++++.|+.|++||+.+.......... ........|...|++++|+|+ +. +|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~ 306 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGN 306 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEEC
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEe
Confidence 77889999998 779999999999999999876541110000 001112467888999999998 66 899999
Q ss_pred CCCcEEEEECCc------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 721 ADSRIRVVDGID------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 721 ~Dg~I~VwD~~~------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.|+.|++||... ....+..+.+...|.+++|+|++++|++++.||.|+|||+.+
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999999654 333555555578999999999999999999999999999853
No 52
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.7e-31 Score=304.03 Aligned_cols=282 Identities=15% Similarity=0.156 Sum_probs=230.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
..+++++|+|+|++|++++.|+.|++|++.+.+....+. .+ ..+....+++++.+++++..++.+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~dg~i~-------- 122 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK-----RA-DYTAVDTAKLQMRRFILGTTEGDIK-------- 122 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC-----SC-CEEEEEEECSSSCEEEEEETTSCEE--------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe-----cC-CceEEEEEecCCCEEEEEECCCCEE--------
Confidence 345579999999999999999999999998876554432 22 4455667899999999998888773
Q ss_pred cccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEE
Q 002407 537 NRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCI 613 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v 613 (927)
+|++. .+.+..+.+|...|++++|+|+ .+|++++.|++|++||+.+++.+..+. |...|.++
T Consensus 123 ---------------iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 187 (420)
T 3vl1_A 123 ---------------VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187 (420)
T ss_dssp ---------------EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEE
T ss_pred ---------------EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEE
Confidence 44443 3444556799999999999998 789999999999999999999888887 99999999
Q ss_pred EEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc----CCCcEEEE---------------------EECCCCCEEEEEE
Q 002407 614 QFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND----LHEMVTAA---------------------CYTPDGQGALVGS 668 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~----~~~~V~sl---------------------a~spdg~~l~tgs 668 (927)
+|+| ++++|++++.|+.|++||+.+++.+..+. +...+.++ +|+|++++|++++
T Consensus 188 ~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 188 AIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp EEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred EEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 9999 99999999999999999999998876554 23344444 4578999999999
Q ss_pred CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc---eEEEEeecCCcc
Q 002407 669 YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNS 745 (927)
Q Consensus 669 ~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~ 745 (927)
.||.|++||+++++...... ..|...|++++|+|++..+|++++.|+.|++||.... ...+..+ +...
T Consensus 267 ~dg~i~i~d~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~ 337 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQLP--------SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTP 337 (420)
T ss_dssp TTSCEEEEETTTCCEEEEEC--------CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSC
T ss_pred CCCeEEEEECCCCceeEEcc--------cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCC
Confidence 99999999999987666543 3678899999999998778999999999999997542 4555543 4556
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 746 QISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+..+ +.+++++|++++.|+.|+||++.....+
T Consensus 338 v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 338 INNV-YFAAGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp EEEE-EEETTEEEEEETTTEEEEEEEECCTTCC
T ss_pred ceEE-EeCCCCEEEEecCCccEEEEeccCCCCC
Confidence 6666 4567889999999999999999886544
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-30 Score=284.98 Aligned_cols=288 Identities=17% Similarity=0.255 Sum_probs=230.3
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
.....+.+|...|++++|+|+ .+|++++.|+.|++|++.+++....+. |...|.+++|+| ++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEE
Confidence 456688999999999999999 789999999999999999999888886 999999999999 99999999999999999
Q ss_pred eCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 636 SIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 636 Dl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
|+.+++.+.. ..+...|.+++|+|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------~~~~~~v~~~~~~~~~~- 162 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL---------PAHSDPVSAVHFNRDGS- 162 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCEEEEEECTTSS-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe---------cCCCCcEEEEEEcCCCC-
Confidence 9999887764 456788999999999999999999999999999998876654 36888999999999887
Q ss_pred EEEEEECCCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeee
Q 002407 715 EVLVTSADSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHF 793 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~ 793 (927)
+|++++.|+.|++||.......... ..+...+..++|+|++++|++++.|+.|+|||+.++......
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------ 230 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY------------ 230 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE------------
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE------------
Confidence 8999999999999997654433322 234567889999999999999999999999999764321100
Q ss_pred cCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCc
Q 002407 794 HCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPE 873 (927)
Q Consensus 794 ~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~ 873 (927)
. +. ..... ......+.+++.+|++++ .|+.+++|+.
T Consensus 231 ~-----------~~-----------------~~~~~------------~~~~~~~~~~~~~l~sg~----~dg~i~vwd~ 266 (312)
T 4ery_A 231 T-----------GH-----------------KNEKY------------CIFANFSVTGGKWIVSGS----EDNLVYIWNL 266 (312)
T ss_dssp C-----------SS-----------------CCSSS------------CCCEEEECSSSCEEEECC----TTSCEEEEET
T ss_pred E-----------ec-----------------CCceE------------EEEEEEEeCCCcEEEEEC----CCCEEEEEEC
Confidence 0 00 00000 000011246778888877 7889999987
Q ss_pred hhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEc--CCCcEEEeec
Q 002407 874 EKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAG--LRGEIRAYQN 920 (927)
Q Consensus 874 e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs--~DG~IrvW~~ 920 (927)
..... ..+|...+. +++|+|++.+|++++ .||+|++|+.
T Consensus 267 ~~~~~~~~~~~h~~~v~--------~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVI--------STACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp TTCCEEEEECCCSSCEE--------EEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred CCchhhhhhhccCCcEE--------EEeecCcCCceEEEEccCCccEEEecC
Confidence 64322 334555444 468999999999997 6999999984
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6e-30 Score=281.64 Aligned_cols=282 Identities=15% Similarity=0.259 Sum_probs=234.6
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+...++++|+.|++|++|+....+.....+.+.+.+|...|++++|+|+|++|++++.|+.|++|+..........
T Consensus 49 ~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~---- 124 (340)
T 4aow_A 49 QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF---- 124 (340)
T ss_dssp TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee----
Confidence 4456789999999999999988777667777899999999999999999999999999999999999887655543
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEEEccCCCCEEEEEec
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~l~gH~~~V~~l~~s 576 (927)
..+...+....+.+++..++++..++.+.. |+... +....+.+|...|..++|+
T Consensus 125 -~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~-----------------------~d~~~~~~~~~~~~~~~~~v~~~~~~ 180 (340)
T 4aow_A 125 -VGHTKDVLSVAFSSDNRQIVSGSRDKTIKL-----------------------WNTLGVCKYTVQDESHSEWVSCVRFS 180 (340)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEE-----------------------ECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred -cCCCCceeEEEEeecCccceeecCCCeEEE-----------------------EEeCCCceEEEEeccccCcccceEEc
Confidence 344456677788899898888888777633 33322 2233456899999999998
Q ss_pred CC---cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcE
Q 002407 577 KS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 577 pd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V 652 (927)
++ ..+++++.|++|++||+.+++++..+. |...|++++|+| ++++|++|+.|+.|++||+.+.+.+..+.++..+
T Consensus 181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v 259 (340)
T 4aow_A 181 PNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDII 259 (340)
T ss_dssp SCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCE
T ss_pred cCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceE
Confidence 86 468899999999999999999988886 999999999999 9999999999999999999999999888888999
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.+++|+|++.+ ++++.|+.|++||++++.....+...........|...|++++|+|++. +|++++.|+.|+|||..
T Consensus 260 ~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 260 NALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEEEEE
T ss_pred EeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCC
Confidence 99999998865 5566799999999999887776554433344457889999999999987 89999999999999954
No 55
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.98 E-value=4.9e-30 Score=292.06 Aligned_cols=296 Identities=22% Similarity=0.305 Sum_probs=222.7
Q ss_pred ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC------------------CceEEEEEccCCCCEE
Q 002407 564 QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS------------------DYVTCIQFNPVDDRYF 623 (927)
Q Consensus 564 ~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~------------------~~V~~v~fsp~dg~~L 623 (927)
.+|...|.+++|+|+ .+|+++ .+++++||++.+++.+..+. |. ..|.+++|+| ++++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g-~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEE-CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEE-cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEE
Confidence 369999999999999 556665 58999999999999887765 21 2499999999 99999
Q ss_pred EEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 624 ISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
++|+.|+.|++||+.+++.+.. ..|...|.+++|+|++++|++++.|+.|++||+.+++....+ .+...
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----------~~~~~ 208 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----------SIEDG 208 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----------ECSSC
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE----------EcCCC
Confidence 9999999999999999987764 456789999999999999999999999999999998876553 34567
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEE-----eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFK-----GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~-----~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+.+++|+|....+|++++.|+.|++||..... ..+. ...+...|.+++|+|++++|++++.|+.|+|||+.+.
T Consensus 209 v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999444489999999999999965432 2221 1345678999999999999999999999999999875
Q ss_pred CCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeE
Q 002407 776 SRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTI 855 (927)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~L 855 (927)
......... . .+.. ...+ .++. ..+..++|+|++.+|
T Consensus 289 ~~~~~~~~~----------~---------~~~~---------~~~~---~~h~------------~~v~~~~~~~~~~~l 325 (393)
T 1erj_A 289 NNKSDSKTP----------N---------SGTC---------EVTY---IGHK------------DFVLSVATTQNDEYI 325 (393)
T ss_dssp -------------------------------CE---------EEEE---ECCS------------SCEEEEEECGGGCEE
T ss_pred CCcccccCC----------C---------CCcc---------eEEE---eccc------------CcEEEEEECCCCCEE
Confidence 432111000 0 0000 0000 0111 112345699999999
Q ss_pred EEeccccccCccccccCchhhc---cccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 856 SSATNSYFFDRISATWPEEKLV---LTARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 856 asas~~~~~d~~v~~W~~e~l~---~~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
++++ .|+.+.+|+..... ...+|...+..+.+.. ...++|++.+||||+.||+||+|+.
T Consensus 326 ~sgs----~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~--~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 326 LSGS----KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN--GSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEE----TTSEEEEEETTTCCEEEEEECCSSCEEEEEECS--SCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEe----CCCeEEEEECCCCeEEEEECCCCCCEEEEEecC--CcCcCCCCCEEEEECCCCcEEECcc
Confidence 9987 88999999876432 2456777776665443 2457789999999999999999984
No 56
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.4e-31 Score=314.81 Aligned_cols=200 Identities=12% Similarity=0.160 Sum_probs=163.9
Q ss_pred EEEccCCCCEEEEEecCC-------cEEEEEeCCCcEEEEeCCCCcE-----------EEEEe-cCCceEEEEEccCCCC
Q 002407 561 CSFQGHLDDVLDLSWSKS-------QHLLSSSMDKTVRLWHLSSKTC-----------LKIFS-HSDYVTCIQFNPVDDR 621 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-------~~L~Sgs~DgtV~lWDl~t~~~-----------~~~~~-h~~~V~~v~fsp~dg~ 621 (927)
..+.+|.+.|.+++|+|+ ++|++++.|++|+|||+..+.. ...+. |...|++++|+| + .
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~ 278 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-T 278 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-S
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-C
Confidence 345678899999999985 5899999999999999987642 12343 889999999998 5 4
Q ss_pred EEEEEECCCcEEEEeCCCCc-E-EEeccCCCcEEEE--EECCCC-CEEEEEECCCeEEEEECCCCeeeeecccccccccc
Q 002407 622 YFISGSLDAKVRIWSIPERQ-V-VDWNDLHEMVTAA--CYTPDG-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK 696 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t~~-~-v~~~~~~~~V~sl--a~spdg-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~ 696 (927)
+|++|+.||+|++||+.++. . .....|...|+++ +|+|++ .+|++++.|++|+|||+++++....+.
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-------- 350 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-------- 350 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE--------
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc--------
Confidence 89999999999999998763 2 2356678899999 578888 899999999999999998876544322
Q ss_pred cCCC--CCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 697 RSHQ--RKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 697 ~~h~--~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
.|. ..|.+++|+|++. .+++++.|++|++||.+... ..+.+ |...|.+++|+|+|++|++|+.|++|+||++
T Consensus 351 -~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 351 -SRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp -EECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred -cccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 232 3578999999887 68999999999999976543 44444 5778999999999999999999999999998
Q ss_pred CC
Q 002407 773 EA 774 (927)
Q Consensus 773 ~s 774 (927)
..
T Consensus 427 ~~ 428 (524)
T 2j04_B 427 AR 428 (524)
T ss_dssp CS
T ss_pred hH
Confidence 54
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=2.9e-30 Score=293.86 Aligned_cols=308 Identities=13% Similarity=0.146 Sum_probs=246.8
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++++..++.|++|+..+.+.... +..| ..+....|+|++++||+|+.||.|+|||+.+++....+ ..
T Consensus 69 ~~l~~~~~d~~v~i~d~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~ 137 (420)
T 3vl1_A 69 SHLYKARLDGHDFLFNTIIRDGSKM-----LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-----QA 137 (420)
T ss_dssp TTEEEEEETTEEEEEECCSEETTTT-----SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-----TS
T ss_pred CeEEEEEcCCcEEEEEecccceeeE-----EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-----cc
Confidence 3467778889999999877665433 3455 45556678999999999999999999999877654442 56
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCC-c
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
|...+.+++|+|++.+++++..++.+ .+|++ .++.+..+.+|...|++++|+|+ .
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i-----------------------~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQL-----------------------KIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEE-----------------------EEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeE-----------------------EEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 78899999999999999999888877 34444 34677888999999999999998 7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEE---------------------ccCCCCEEEEEECCCcEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS----HSDYVTCIQF---------------------NPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~----h~~~V~~v~f---------------------sp~dg~~L~sgs~Dg~I~I 634 (927)
+|++++.|++|++||+.+++++..+. +...|.+++| +| ++++|++++.||.|++
T Consensus 195 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 195 NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITV 273 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEE
T ss_pred EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEE
Confidence 89999999999999999999998885 4445555554 67 8889999999999999
Q ss_pred EeCCCCcEEEec--cCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCee-eeecccccccccccCCCCCeEEEEEcC
Q 002407 635 WSIPERQVVDWN--DLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKL-QQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 635 WDl~t~~~v~~~--~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
||+.+++.+... .+...|.+++|+|++. +|++|+.||.|++||+++++. ...+. ..+...|+++.+.
T Consensus 274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~v~~~~~~- 344 (420)
T 3vl1_A 274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL--------INEGTPINNVYFA- 344 (420)
T ss_dssp EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE--------ESTTSCEEEEEEE-
T ss_pred EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh--------ccCCCCceEEEeC-
Confidence 999998766543 3557899999999999 999999999999999998753 33321 2367788888665
Q ss_pred CCCcEEEEEECCCcEEEEECCcc---------eEEEEeecCCcceEEEEEecCCC---EEEEEECCCcEEEEECCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDL---------VHKFKGFRNTNSQISASLTANGR---YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~---------~~~~~~~~~~~~v~sv~fspdg~---~Lasgs~Dg~I~IWdl~s 774 (927)
++. +|++++.|+.|++|+.... ........+...+..++|+|+++ .|++++.+|.+.+|++++
T Consensus 345 ~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 345 AGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 444 8999999999999995431 11112234567789999999999 788888999999999875
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=4.8e-30 Score=286.12 Aligned_cols=285 Identities=14% Similarity=0.135 Sum_probs=232.7
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc--ccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+..|.++|++++|+|++++||+++.|+.|+||++.+++ ....+ .++...+..+.|+|++.+++++..++.+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~~~~~dg~i~- 77 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-----KEHNGQVTGVDWAPDSNRIVTCGTDRNAY- 77 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-----ECCSSCEEEEEEETTTTEEEEEETTSCEE-
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-----cCCCCcccEEEEeCCCCEEEEEcCCCeEE-
Confidence 35699999999999999999999999999999998876 44443 36778899999999999999998888774
Q ss_pred ecccccccccccccCcccccceEeecCCC---ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcE---EE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTC---LK 602 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k---~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~---~~ 602 (927)
+|++... ....+..|...|.+++|+|+ .+|++++.|+.|++||+..+.. ..
T Consensus 78 ----------------------vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 78 ----------------------VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ----------------------EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ----------------------EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 3333222 23345779999999999998 7899999999999999998763 33
Q ss_pred EEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC------------------CCcEEEec-cCCCcEEEEEECCCC
Q 002407 603 IFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP------------------ERQVVDWN-DLHEMVTAACYTPDG 661 (927)
Q Consensus 603 ~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~------------------t~~~v~~~-~~~~~V~sla~spdg 661 (927)
.+. |...|.+++|+| ++++|++++.|+.|++||+. .++.+..+ .+...|.+++|+|++
T Consensus 136 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 214 (372)
T 1k8k_C 136 HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 214 (372)
T ss_dssp EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS
T ss_pred eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC
Confidence 332 789999999999 99999999999999999953 55666544 667889999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEE---
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHK--- 736 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~--- 736 (927)
++|++++.|+.|++||+.+++....+ ..|...|++++|+|++. +|+ ++.|+.|++|+... ..-.
T Consensus 215 ~~l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~v~~~~~~~~~~-~l~-~~~d~~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 215 SRVAWVSHDSTVCLADADKKMAVATL---------ASETLPLLAVTFITESS-LVA-AGHDCFPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp SEEEEEETTTEEEEEEGGGTTEEEEE---------ECSSCCEEEEEEEETTE-EEE-EETTSSCEEEEEETTTTEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCCceeEEE---------ccCCCCeEEEEEecCCC-EEE-EEeCCeEEEEEccCcCceEEEee
Confidence 99999999999999999988877664 36778999999999875 444 45999999999644 1100
Q ss_pred -----------------------------------EEe-ecCCcceEEEEEe-cCC---CEEEEEECCCcEEEEECCCCC
Q 002407 737 -----------------------------------FKG-FRNTNSQISASLT-ANG---RYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 737 -----------------------------------~~~-~~~~~~v~sv~fs-pdg---~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
... ..|...|.+++|. ++| .+|++++.||.|+||++.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 2567789999866 676 999999999999999997754
No 59
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=6.9e-30 Score=279.54 Aligned_cols=256 Identities=18% Similarity=0.247 Sum_probs=211.4
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.+.+|.+.|++|+|+|++++||+|+.||.|+||++.++....
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------------------------------- 47 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW------------------------------------- 47 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-------------------------------------
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-------------------------------------
Confidence 4568999999999999999999999999999999987543211
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC--C-cEEEEEeCCCcEEEEeCCCC--------
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK--S-QHLLSSSMDKTVRLWHLSSK-------- 598 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp--d-~~L~Sgs~DgtV~lWDl~t~-------- 598 (927)
+.+..+.+|...|++++|+| + .+|++++.|++|++||+.++
T Consensus 48 ----------------------------~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 99 (351)
T 3f3f_A 48 ----------------------------ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRR 99 (351)
T ss_dssp ----------------------------EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCS
T ss_pred ----------------------------eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccC
Confidence 22446678999999999998 3 78999999999999999887
Q ss_pred -cEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCCcEEEe--------------ccCCCcEEEEEECCC
Q 002407 599 -TCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQVVDW--------------NDLHEMVTAACYTPD 660 (927)
Q Consensus 599 -~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~~~v~~--------------~~~~~~V~sla~spd 660 (927)
+++..+. |...|.+++|+| + +++|++++.|+.|++||+.+++.+.. ..+...+.+++|+|+
T Consensus 100 ~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 178 (351)
T 3f3f_A 100 WNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPS 178 (351)
T ss_dssp EEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCC
T ss_pred cceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccC
Confidence 4455554 999999999999 7 99999999999999999988754321 135578999999997
Q ss_pred ---CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC---cEEEEEECCCcEEEEECCcc-
Q 002407 661 ---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS---SEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 661 ---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~---~~Llsgs~Dg~I~VwD~~~~- 733 (927)
+.+|++++.++.+.+|+...+....... ...|...|++++|+|++. .+|++++.|+.|++||....
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 179 RFSPEKLAVSALEQAIIYQRGKDGKLHVAAK-------LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp SSSCCEEEEEETTEEEEEEECTTSCEEEEEE-------CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred CCCCcEEEEecCCCcEEEEccCCCceeeeee-------cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 9999999999999888888776533322 247889999999999973 58999999999999995431
Q ss_pred ---------------------------------------------eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 734 ---------------------------------------------VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 734 ---------------------------------------------~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
........+...|.+++|+|++++|++++.||.|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~ 331 (351)
T 3f3f_A 252 SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331 (351)
T ss_dssp ---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEE
T ss_pred CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEE
Confidence 22223334677899999999999999999999999
Q ss_pred EEECCCCCCc
Q 002407 769 VWKYEAESRP 778 (927)
Q Consensus 769 IWdl~s~~~~ 778 (927)
||++.++...
T Consensus 332 iw~~~~~~~~ 341 (351)
T 3f3f_A 332 LWKATYSNEF 341 (351)
T ss_dssp EEEECTTSCE
T ss_pred EEecCcCcch
Confidence 9999986543
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=1.7e-29 Score=276.95 Aligned_cols=287 Identities=12% Similarity=0.175 Sum_probs=233.5
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.|.+.|.+++|+|||++|+++..++.+.+|.......... ...|...+.++.++|++.+++++. ++.+..+...
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~ 80 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-----TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS 80 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-----EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccce-----eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC
Confidence 3677899999999999999998888777776544332222 235778899999999999999987 7776443322
Q ss_pred ccccccccccCcccccceEeecCCCceEEEc--cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HS 607 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~ 607 (927)
... ....+..+. +|...|.+++|+|+ .+|++++.|+.|++||+.+++ ....+. |.
T Consensus 81 ~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 141 (337)
T 1gxr_A 81 HPG-------------------NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141 (337)
T ss_dssp STT-------------------CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSS
T ss_pred CCC-------------------ceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCC
Confidence 100 012233333 79999999999999 789999999999999999887 444444 88
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
..|.+++|+| ++++|++++.|+.|++||+.+++.+..+ .+...+.+++|+|++++|++++.|+.|++||+.+++....
T Consensus 142 ~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~ 220 (337)
T 1gxr_A 142 PACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220 (337)
T ss_dssp SCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEee
Confidence 8999999999 9999999999999999999998877654 4678999999999999999999999999999999887665
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
. .+...+.+++|+|++. +|++++.++.|++||...... .....+...+.+++|+|++++|++++.||.
T Consensus 221 ~----------~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 288 (337)
T 1gxr_A 221 H----------DFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288 (337)
T ss_dssp E----------ECSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred e----------cCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence 3 4567899999999987 899999999999999765433 344556788999999999999999999999
Q ss_pred EEEEECCCCCCc
Q 002407 767 VYVWKYEAESRP 778 (927)
Q Consensus 767 I~IWdl~s~~~~ 778 (927)
|++|++.++...
T Consensus 289 i~~~~~~~~~~~ 300 (337)
T 1gxr_A 289 LNAWRTPYGASI 300 (337)
T ss_dssp EEEEETTTCCEE
T ss_pred EEEEECCCCeEE
Confidence 999999887644
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=4.8e-31 Score=291.28 Aligned_cols=246 Identities=19% Similarity=0.278 Sum_probs=197.0
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.+.+|.+.|++|+|+|+|++||||+.|++|+|||+.++..
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------- 47 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------- 47 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------------------------------
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------------------------------
Confidence 34579999999999999999999999999999999865321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC---CcEEEEEeCCCcEEEEeCCCCc--EEEEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK---SQHLLSSSMDKTVRLWHLSSKT--CLKIF 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp---d~~L~Sgs~DgtV~lWDl~t~~--~~~~~ 604 (927)
..+..+.+|.+.|++++|++ ..+|++++.|++|+|||+.+++ .+..+
T Consensus 48 ----------------------------~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 48 ----------------------------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp ----------------------------EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEE
T ss_pred ----------------------------EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEc
Confidence 12345778999999999986 2689999999999999999874 45555
Q ss_pred e-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCCcEE---E-eccCCCcEEEEEECCC-----------------
Q 002407 605 S-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPERQVV---D-WNDLHEMVTAACYTPD----------------- 660 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~~~v---~-~~~~~~~V~sla~spd----------------- 660 (927)
. |...|.+++|+| + +.+|++|+.|+.|++||+..+... . ...|...+.+++|+|+
T Consensus 100 ~~h~~~V~~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (316)
T 3bg1_A 100 AGHDSSVNSVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNY 178 (316)
T ss_dssp CCCSSCCCEEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCC
T ss_pred cCCCCceEEEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccc
Confidence 4 999999999999 6 789999999999999999876322 2 3345678999999997
Q ss_pred CCEEEEEECCCeEEEEECCCCe---eeeecccccccccccCCCCCeEEEEEcCCC---CcEEEEEECCCcEEEEECCcc-
Q 002407 661 GQGALVGSYKGSCHLYNTSENK---LQQKSPINLQNKKKRSHQRKITGFQFAPGS---SSEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~~~~---~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg---~~~Llsgs~Dg~I~VwD~~~~- 733 (927)
+++|++|+.|+.|++||+.... .... ...|...|++++|+|++ ..+|++++.|++|+|||....
T Consensus 179 ~~~l~sgs~D~~v~lWd~~~~~~~~~~~~---------l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 179 IKRFASGGCDNLIKLWKEEEDGQWKEEQK---------LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249 (316)
T ss_dssp CCBEECCBTTSBCCEEEECTTSCEEEEEC---------CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT
T ss_pred cceEEEecCCCeEEEEEeCCCCccceeee---------cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc
Confidence 4789999999999999997542 2222 24799999999999986 248999999999999996541
Q ss_pred -----eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 734 -----VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 734 -----~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+. .+...|.+++|+|++++||+++.|+.|+||+...
T Consensus 250 ~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 250 SNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 12233 3467899999999999999999999999999864
No 62
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=6.5e-31 Score=303.28 Aligned_cols=302 Identities=15% Similarity=0.189 Sum_probs=216.7
Q ss_pred eEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 560 ICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 560 i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.....+|...|++|+|+|. .+|++|+.||+|+|||+.+++....+ .|...|++|+|+|.++++|++++.|++|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 3456689999999999995 68999999999999999887654443 399999999999977899999999999999
Q ss_pred EeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 635 WSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 635 WDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
||+.++.+.....++ ..+.+++|+|++++|++|+.||.|++||++...+ .. ...|...|++++|+|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-~~---------~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-WN---------LRMHKKKVTHVALNPC 261 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-CC---------SBCCSSCEEEEEECTT
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-EE---------EecccceEEeeeecCC
Confidence 999887655444333 4678999999999999999999999999975432 22 2478999999999999
Q ss_pred CCcEEEEEECCCcEEEEECCcce---EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceee
Q 002407 712 SSSEVLVTSADSRIRVVDGIDLV---HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTH 788 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~~~---~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~ 788 (927)
+..+|++++.|+.|+|||..... .......|...|.+++|+|+|++|++++.||.|+|||+.+...+.....+....
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 88889999999999999965432 112223467789999999999999999999999999998865443221110000
Q ss_pred eeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccc
Q 002407 789 SYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRIS 868 (927)
Q Consensus 789 ~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v 868 (927)
... ...+.....+. .....+.+++++..++..+ ..++.+
T Consensus 342 ------~~~--------------------~~~~~~~~~~~------------~~~~~~~~~~d~~~~~~~~---~~~~~i 380 (435)
T 4e54_B 342 ------FQH--------------------LTPIKAAWHPR------------YNLIVVGRYPDPNFKSCTP---YELRTI 380 (435)
T ss_dssp ------CSS--------------------SCCCBCEECSS------------SSCEEEECCCCTTSCCSST---TCCCCE
T ss_pred ------ccc--------------------ceeEEEEEcCC------------CCEEEEEEcCCCCeEEEEe---cCCCEE
Confidence 000 00000000000 0011123455655555433 234678
Q ss_pred cccCchhhcc----ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 869 ATWPEEKLVL----TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 869 ~~W~~e~l~~----~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
.+|+...... ...|...+.++ .+|||+|++||+|+ |++|+||+.
T Consensus 381 ~iwd~~~g~~~~~l~~~~~~~v~s~-------~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 381 DVFDGNSGKMMCQLYDPESSGISSL-------NEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp EEECSSSCCEEEEECCSSCCCCCCE-------EEECTTSSCEEEEC-SSEEEECCC
T ss_pred EEEECCCCcEEEEEeCCCCCcEEEE-------EEECCCCCEEEEEc-CCcEEEEEC
Confidence 8998764322 12333333322 47999999999987 889999984
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-30 Score=283.29 Aligned_cols=276 Identities=20% Similarity=0.244 Sum_probs=209.9
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEe-ec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccc---ceee
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEI-QA-HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERK---GELL 495 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L-~g-H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~---~~l~ 495 (927)
..++++|..+++|++|+...++.. ....+ .+ |.+.|++|+|+|++++||+|+.|++|+||++...... ...
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~~~---~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~- 99 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDDFT---LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDL- 99 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSCCE---EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEE-
T ss_pred CCEEEEEcCCCEEEEEEecCCCeE---EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcccccee-
Confidence 348899999999999998765432 22334 34 9999999999999999999999999999998643210 011
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-----CCceEEEccCCCCE
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-----DKPICSFQGHLDDV 570 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-----~k~i~~l~gH~~~V 570 (927)
.....+|...|..++|+|++.+|++++.++.+.. |++. .+.+..+.+|...|
T Consensus 100 ~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~i-----------------------wd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI-----------------------WETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp EEEEC----CEEEEEECTTSCEEEEEETTSCEEE-----------------------EECCTTCCCCEEEEEECCCSSCE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEE-----------------------EeccCCCCCeEEEEEeccCCCce
Confidence 1123577889999999999999999999988843 4331 13567789999999
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCC----
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER---- 640 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~---- 640 (927)
.+++|+|+ .+|++++.|++|++||+.++ +++..+. |...|.+++|+| + +.+|++++.|++|++||+..+
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTS
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccc
Confidence 99999998 78999999999999998876 5666665 999999999999 6 678999999999999998654
Q ss_pred ----cEEEec-c-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCC-CeEEEEEcCC-C
Q 002407 641 ----QVVDWN-D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-KITGFQFAPG-S 712 (927)
Q Consensus 641 ----~~v~~~-~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~-~Vtsl~fspd-g 712 (927)
.+...+ . |...|.+++|++++ +|++++.||.|+|||..++....... ....|.. .|++++|+|. +
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~------~~~~h~~~~v~~v~~~~~~~ 308 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK------RALCHGVYEINVVKWLELNG 308 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE------ESCTTTTSCEEEEEEC----
T ss_pred cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec------cccccccceEEEEEEecCCC
Confidence 233333 2 67899999999765 89999999999999998764221111 0135666 8999999993 2
Q ss_pred CcEEEEEECCCcEEEEECC
Q 002407 713 SSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~ 731 (927)
..+|++++.|+.|+|||..
T Consensus 309 ~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 309 KTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp -CCEEEEETTSEEEEEEC-
T ss_pred ceEEEEecCCCcEEEEEec
Confidence 3379999999999999964
No 64
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=9.3e-30 Score=286.74 Aligned_cols=314 Identities=18% Similarity=0.237 Sum_probs=239.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeec--------ccccCc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLE--------KQEDGH 502 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~--------~~~~~~ 502 (927)
.+++|+....+.. +.+.+|.+.|++|+|+| ++++||+|+.||.|+||++.++.....+.. ....++
T Consensus 24 ~~~v~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 24 TRRVLGLELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHTEEECTTE-----EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCC
T ss_pred cceeeccccCcce-----eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccC
Confidence 3455655444332 44578999999999999 999999999999999999998876655431 111357
Q ss_pred cccEEEEccCC-CCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---
Q 002407 503 LNMLLLANGSP-EPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--- 578 (927)
Q Consensus 503 ~~~v~~v~~sp-d~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--- 578 (927)
...+..+.|+| ++.++++++.++.+ .+|++..........+...+.++.|++.
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i-----------------------~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTL-----------------------KVWDTNTLQTADVFNFEETVYSHHMSPVSTK 155 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEE-----------------------EEEETTTTEEEEEEECSSCEEEEEECSSCSS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeE-----------------------EEeeCCCCccceeccCCCceeeeEeecCCCC
Confidence 88999999999 77788888888877 4555544433334448889999999985
Q ss_pred -cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCc-EEEe---------
Q 002407 579 -QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQ-VVDW--------- 645 (927)
Q Consensus 579 -~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~-~v~~--------- 645 (927)
.+|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++. +|++++.||.|++||++++. .+..
T Consensus 156 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 234 (408)
T 4a11_B 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234 (408)
T ss_dssp CCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSC
T ss_pred CcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccc
Confidence 379999999999999999999888887 999999999999 666 69999999999999998764 2221
Q ss_pred -------ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 646 -------NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 646 -------~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
..+...|.+++|+|++++|++++.||.|++||+.+++.......... ......+ .+.+.......+++
T Consensus 235 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC----NNSKKGL-KFTVSCGCSSEFVF 309 (408)
T ss_dssp CCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC----CCCSSCC-CCEECCSSSSCEEE
T ss_pred eeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc----ccccccc-eeEEecCCCceEEE
Confidence 34667899999999999999999999999999998876543321110 0111111 22233333336888
Q ss_pred EECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 719 TSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 719 gs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
++.++.|++||............+...|.+++|+|++++|++++.||.|+||++.+.+...
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 8899999999976655555555567889999999999999999999999999999876543
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=8.5e-29 Score=286.47 Aligned_cols=284 Identities=17% Similarity=0.291 Sum_probs=237.9
Q ss_pred eeeEeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 448 KCQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 448 ~~q~L~gH~~~I-~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
....|.+|.+.| .++.| ++++|++|+.||+|+|||+.+++....+ .+|...|.++.+++++ .+++++.++.
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-----~~h~~~V~~l~~~~~~-~l~s~s~dg~ 184 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-----SGHDGGVWALKYAHGG-ILVSGSTDRT 184 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-----eCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence 345778999885 66666 5679999999999999999998877665 4788899999999988 7778878887
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecC--C-cEEEEEeCCCcEEEEeCCCCcE--
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSK--S-QHLLSSSMDKTVRLWHLSSKTC-- 600 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~sp--d-~~L~Sgs~DgtV~lWDl~t~~~-- 600 (927)
+ .+|++ +++.+..+.+|...|.+++|++ + .+|++++.|++|++||+.++..
T Consensus 185 i-----------------------~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 185 V-----------------------RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp E-----------------------EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred E-----------------------EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 7 44444 3467788899999999999984 4 6799999999999999987753
Q ss_pred ---------------------EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEE
Q 002407 601 ---------------------LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (927)
Q Consensus 601 ---------------------~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~ 657 (927)
+..+. |...|.++ ++ ++++|++++.|+.|++||+.+++.+..+ .+...|.+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence 22333 78888887 45 7889999999999999999999877644 56789999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEE
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKF 737 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~ 737 (927)
+|++++|++|+.||.|++||+.+++....+ ..|...|.+++|++ .+|++++.|+.|++||.......+
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~ 386 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTL---------QGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKF 386 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEE
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------eCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceee
Confidence 999999999999999999999999887765 47889999999985 389999999999999987766666
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
..+ +...+..++|++++++|++++ ||.|+|||+.+++...
T Consensus 387 ~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 387 SYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred eec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 554 455677789999999999998 8999999999987654
No 66
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=1.7e-29 Score=284.83 Aligned_cols=300 Identities=13% Similarity=0.120 Sum_probs=225.7
Q ss_pred CCceEEEccCCCCEEEEEecCCc--EEEEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCc
Q 002407 557 DKPICSFQGHLDDVLDLSWSKSQ--HLLSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~spd~--~L~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
.+....+.+|...|++++|+|++ +|++++.|++|+|||+.+++....+. |...|.+++|+|.++++|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 35567889999999999999984 89999999999999999988887765 99999999999956789999999999
Q ss_pred EEEEeCCCCcEEEeccCC---CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 632 VRIWSIPERQVVDWNDLH---EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~---~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
|++||+.+........+. ..|.+++|+|++++|++++.|+.|++||+. ++....+ ..|...|++++|
T Consensus 143 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~---------~~h~~~v~~~~~ 212 (383)
T 3ei3_B 143 TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE---------KLHKAKVTHAEF 212 (383)
T ss_dssp EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE---------ECSSSCEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe---------ccCCCcEEEEEE
Confidence 999999976655554443 679999999999999999999999999995 4444332 478899999999
Q ss_pred cCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceEEEEEec-CCCEEEEEECCCcEEEEECCCCCCcccccc
Q 002407 709 APGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQISASLTA-NGRYVVSASEDSYVYVWKYEAESRPSRSKS 783 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~ 783 (927)
+|++..+|++++.|+.|++||... ... .....+...+.+++|+| ++++|++++.|+.|+|||+.+...+.....
T Consensus 213 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 213 NPRCDWLMATSSVDATVKLWDLRNIKDKNSY-IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CSSCTTEEEEEETTSEEEEEEGGGCCSTTCE-EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCCCCEEEEEeCCCEEEEEeCCCCCcccce-EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 999877899999999999999654 212 12224678899999999 999999999999999999988765433211
Q ss_pred cceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc
Q 002407 784 ITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF 863 (927)
Q Consensus 784 ~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~ 863 (927)
...... -+...+. .. | .+. .....++|+|++.+ +++
T Consensus 292 ~~~~~~---~~~~~~~--~~-----------------~----~p~------------~~~~~~~~s~dg~~--s~s---- 327 (383)
T 3ei3_B 292 HPHRQF---QHLTPIK--AT-----------------W----HPM------------YDLIVAGRYPDDQL--LLN---- 327 (383)
T ss_dssp CCBCCC---TTSCCCC--CE-----------------E----CSS------------SSEEEEECBCCTTT--CTT----
T ss_pred cccccc---ccccceE--Ee-----------------c----cCC------------CCceEEEecCCccc--ccC----
Confidence 100000 0000000 00 0 000 11122458899888 544
Q ss_pred cCccccccCchhhccc---cc--cCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 864 FDRISATWPEEKLVLT---AR--NRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 864 ~d~~v~~W~~e~l~~~---~~--~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
.|+.+.+|+....... .. +...+. .++|+|+|++|++|+ ||.|++|+.
T Consensus 328 ~d~~i~iwd~~~~~~~~~l~~~~~~~~~~--------~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 328 DKRTIDIYDANSGGLVHQLRDPNAAGIIS--------LNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp CCCCEEEEETTTCCEEEEECBTTBCSCCC--------EEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred CCCeEEEEecCCCceeeeecCCCCCceEE--------EEEEecCccEEEEec-CCcEEEEec
Confidence 7899999997643221 11 111111 358999999999998 999999984
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=298.46 Aligned_cols=305 Identities=14% Similarity=0.108 Sum_probs=231.7
Q ss_pred eEe-ecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCc---CcccceeecccccCccccEEEEccCCCCCeecccccC
Q 002407 450 QEI-QAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVE---SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLD 524 (927)
Q Consensus 450 q~L-~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~---~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~ 524 (927)
+.+ .+|.+.|++|+|+| ++++||+|+.||+|+|||+.+ +....... ...+...|.+++|+|++.+++++..+
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL---TYDCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE---EEECSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee---eccCCCCEEEEEEeCCCCEEEEEeCC
Confidence 455 88999999999999 999999999999999999987 33111111 12467889999999999999999999
Q ss_pred CceeeecccccccccccccCcccccceEeecCCCceEEEc--c--CCCCEEEEE--ecCC-cEEEEEeCCCcEEEEeCCC
Q 002407 525 NHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--G--HLDDVLDLS--WSKS-QHLLSSSMDKTVRLWHLSS 597 (927)
Q Consensus 525 ~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--g--H~~~V~~l~--~spd-~~L~Sgs~DgtV~lWDl~t 597 (927)
+.+..+......... .+.......+..+. . +...+.++. ++++ .+|++++.|++|++||+.+
T Consensus 133 g~i~vwd~~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 133 GQIIVLKVNHYQQES-----------EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp SEEEEEEEEEEEETT-----------EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CEEEEEEeccccCCc-----------eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 888655432100000 00000011222222 2 567788887 4466 7899999999999999999
Q ss_pred CcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEEC----CCCCEEEEEE
Q 002407 598 KTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYT----PDGQGALVGS 668 (927)
Q Consensus 598 ~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~s----pdg~~l~tgs 668 (927)
++++..+. |...|++++|+| ++++|++|+.||.|++||+++++++..+ .+...|.+++|+ |++.+|++|+
T Consensus 202 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 202 LERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp CCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred CeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 99998886 789999999999 9999999999999999999999887754 667789999665 4688999999
Q ss_pred CCCeEEEEECCCCeeeeeccccc--------ccc-------ccc--CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 669 YKGSCHLYNTSENKLQQKSPINL--------QNK-------KKR--SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 669 ~Dg~I~IwDl~~~~~~~~~~i~~--------~~~-------~~~--~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
.||.|++||+.+++....+.... ... ... .|...|++++|+ ++ .+|++++.|+.|++||..
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEATSSIVMFSLN 358 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGGTEEEEEETT
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCCCeEEEEECC
Confidence 99999999999988766543110 000 011 277789999999 44 489999999999999954
Q ss_pred c--ceEEEEee-----------------------------------cCCcceEEEEEecC--CCEEEEEECCCcEEEEE
Q 002407 732 D--LVHKFKGF-----------------------------------RNTNSQISASLTAN--GRYVVSASEDSYVYVWK 771 (927)
Q Consensus 732 ~--~~~~~~~~-----------------------------------~~~~~v~sv~fspd--g~~Lasgs~Dg~I~IWd 771 (927)
. ....+..+ .|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 359 ELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 33333332 16778999999998 88999999999999995
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=278.95 Aligned_cols=296 Identities=16% Similarity=0.148 Sum_probs=228.2
Q ss_pred ceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEe
Q 002407 559 PICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 559 ~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWD 636 (927)
....+.+|...|++++|+|+ .+|++++.|+.|++||+.+++.+..+. |...|.+++|+| ++++|++++.|+.|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Confidence 34568899999999999999 789999999999999999999999887 999999999999 999999999999999999
Q ss_pred CCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC-----CeEEEEECCCCeeeeeccccc--ccccccCCCC--CeEEEE
Q 002407 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINL--QNKKKRSHQR--KITGFQ 707 (927)
Q Consensus 637 l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~--~~~~~~~h~~--~Vtsl~ 707 (927)
+.+++.+....+...+.+++|+|++++|++++.+ +.|++||+............. .......+.. .+.+++
T Consensus 103 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 103 VSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999998888888999999999999999999999 999999998764322211100 0111123444 899999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccce
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITV 786 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~ 786 (927)
|+|++. +|++++.|+.|++||... .........+...+.+++|+|++++|++++.|+.|++||+.+........
T Consensus 183 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---- 257 (369)
T 3zwl_B 183 WSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---- 257 (369)
T ss_dssp ECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----
T ss_pred EcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----
Confidence 999887 899999999999999765 44444444467789999999999999999999999999998753221110
Q ss_pred eeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccc---
Q 002407 787 THSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYF--- 863 (927)
Q Consensus 787 ~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~--- 863 (927)
+. .....++|+|++.++++++....
T Consensus 258 -------~~---------------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 258 -------TD---------------------------------------------CPLNTAVITPLKEFIILGGGQEAKDV 285 (369)
T ss_dssp -------CS---------------------------------------------SCEEEEEECSSSSEEEEEECCC----
T ss_pred -------CC---------------------------------------------CCceeEEecCCCceEEEeecCCCceE
Confidence 00 00112346777777777652211
Q ss_pred -------cCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeec
Q 002407 864 -------FDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQN 920 (927)
Q Consensus 864 -------~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~ 920 (927)
....+.+|+...... ...|..++. +++|+|+|++|+||+.||.|++|+.
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~--------~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN--------TVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp ---------CEEEEEETTTCCEEEEEECCSSCEE--------EEEECTTSSEEEEEETTSEEEEEEE
T ss_pred EEEecCCCcceeEEEecCCCcchhheecccCcEE--------EEEECCCCCEEEEEcCCCeEEEEEC
Confidence 011567777643221 234444444 4689999999999999999999984
No 69
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.3e-30 Score=283.78 Aligned_cols=254 Identities=20% Similarity=0.272 Sum_probs=211.1
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
.+.+.+|.+.|++|+|+|++++||+|+.||.|+||++....
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--------------------------------------- 44 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--------------------------------------- 44 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------------------------------
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------------------------------
Confidence 35678999999999999999999999999999999985321
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc--EEEE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT--CLKI 603 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~--~~~~ 603 (927)
.+.+..+.+|...|++++|+++ .+|++++.|+.|++||+.+++ .+..
T Consensus 45 ----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 96 (379)
T 3jrp_A 45 ----------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV 96 (379)
T ss_dssp ----------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred ----------------------------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence 0234466789999999999864 789999999999999999987 5555
Q ss_pred Ee-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCC---cEEEeccCCCcEEEEEECC-------------CCCEE
Q 002407 604 FS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTP-------------DGQGA 664 (927)
Q Consensus 604 ~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~---~~v~~~~~~~~V~sla~sp-------------dg~~l 664 (927)
+. |...|.+++|+| + +.+|++++.|+.|++||+.+. .......+...|.+++|+| ++.+|
T Consensus 97 ~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l 175 (379)
T 3jrp_A 97 HAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 175 (379)
T ss_dssp ECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred ecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence 54 899999999999 7 899999999999999999886 3344567788999999999 69999
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcc-----eEEE
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDL-----VHKF 737 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~-----~~~~ 737 (927)
++++.|+.|++||++++........ ....|...|++++|+|++ ..+|++++.|+.|+|||.... ...+
T Consensus 176 ~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 250 (379)
T 3jrp_A 176 VTGGADNLVKIWKYNSDAQTYVLES-----TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 250 (379)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEE-----EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES
T ss_pred EEEeCCCeEEEEEecCCCcceeeEE-----EEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee
Confidence 9999999999999987653322111 124788999999999984 458999999999999996542 2333
Q ss_pred EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 738 KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 738 ~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
....+...+.+++|+|++++|++++.||.|+||++...
T Consensus 251 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 251 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred ccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 33346778999999999999999999999999999864
No 70
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=9.7e-29 Score=285.14 Aligned_cols=303 Identities=17% Similarity=0.306 Sum_probs=251.0
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
...+++|..++.|++|+..+++. .+.+.+|.+.|++++|+ +++|++|+.||+|++||+.+++....+ .
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~~~-----~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~ 196 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTGKC-----LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-----Y 196 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTCCE-----EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-----C
T ss_pred CCEEEEEECCCcEEEEECCCCcE-----EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-----C
Confidence 46788999999999999876643 35678999999999997 569999999999999999998776665 3
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCc
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQ 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~ 579 (927)
++...+.++.+. +..+++++.++.+ .+|++ .++.+..+.+|...|.++.| ...
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i-----------------------~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~ 250 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATL-----------------------RVWDIETGQCLHVLMGHVAAVRCVQY-DGR 250 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEE-----------------------EEEESSSCCEEEEEECCSSCEEEEEE-CSS
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEE-----------------------EEEECCCCcEEEEEcCCcccEEEEEE-CCC
Confidence 566778888774 4567777777776 34443 35677888999999999999 347
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~ 657 (927)
.|++++.|+.|++||+.+++++..+. |...|.+++| ++.+|++++.|+.|++||+.+++.+..+ .+...+.++.+
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence 89999999999999999999998887 9999999999 6789999999999999999999887644 45567877776
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce--E
Q 002407 658 TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV--H 735 (927)
Q Consensus 658 spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~--~ 735 (927)
++.+|++|+.||.|++||+.+++....+... ..|...|++++|++ .+|++++.||.|++||..... .
T Consensus 328 --~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 328 --KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------NKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp --ETTEEEEEETTSCEEEEETTTCCEEEEECST------TSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEE
T ss_pred --eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------CCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCCceee
Confidence 5779999999999999999998877665321 24888999999975 389999999999999965443 3
Q ss_pred EEEe---ecCCcceEEEEEecCCCEEEEEECCCc----EEEEECCCC
Q 002407 736 KFKG---FRNTNSQISASLTANGRYVVSASEDSY----VYVWKYEAE 775 (927)
Q Consensus 736 ~~~~---~~~~~~v~sv~fspdg~~Lasgs~Dg~----I~IWdl~s~ 775 (927)
.+.. ..+...+.+++|+|++.+|++++.||+ |.|||+...
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred eeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 3321 345778999999999999999999998 999999864
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=3.8e-29 Score=305.98 Aligned_cols=282 Identities=18% Similarity=0.287 Sum_probs=234.1
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
+...++++|+.+++|++|+............+.+.+|...|++++|+|+|++|+||+.|++|+|||+.++.....+
T Consensus 393 ~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~---- 468 (694)
T 3dm0_A 393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF---- 468 (694)
T ss_dssp TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----
T ss_pred CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE----
Confidence 4456889999999999999876554444455788999999999999999999999999999999999988776664
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE----ccCCCCEEEEE
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF----QGHLDDVLDLS 574 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l----~gH~~~V~~l~ 574 (927)
.+|...|.++.|+|++..+++++.++.+..+ +........+ .+|...|.+++
T Consensus 469 -~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw-----------------------d~~~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 469 -VGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-----------------------NTLGECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp -ECCSSCEEEEEECTTSSCEEEEETTSCEEEE-----------------------CTTSCEEEEECSSTTSCSSCEEEEE
T ss_pred -eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE-----------------------ECCCCcceeeccCCCCCCCcEEEEE
Confidence 4678889999999999999999999888444 3333322222 47999999999
Q ss_pred ecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC
Q 002407 575 WSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE 650 (927)
Q Consensus 575 ~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~ 650 (927)
|+|+ ..|++++.|++|++||+.++++...+. |...|++++|+| ++++|++++.|+.|++||+.+++.+....++.
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~ 603 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSS
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCC
Confidence 9997 379999999999999999999988887 999999999999 99999999999999999999999988888888
Q ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc----------ccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK----------KRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~----------~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
.|.+++|+|++.+|++++ ++.|+|||+.++..+..+........ ...+...+++++|+|++. +|++++
T Consensus 604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs 681 (694)
T 3dm0_A 604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGY 681 (694)
T ss_dssp CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS-EEEEEE
T ss_pred cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEc
Confidence 999999999998887765 56699999999988776543221100 011223478999999987 899999
Q ss_pred CCCcEEEEECC
Q 002407 721 ADSRIRVVDGI 731 (927)
Q Consensus 721 ~Dg~I~VwD~~ 731 (927)
.||.|+||+..
T Consensus 682 ~Dg~i~iW~i~ 692 (694)
T 3dm0_A 682 TDGVIRVWGIG 692 (694)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCeEEEEecc
Confidence 99999999964
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4e-29 Score=284.80 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=222.7
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++++..++.|++|+..+++...... ..|.+.|++|+|+|++++||+|+.||.|+|||+.+++
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~------------ 167 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAE----TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT------------ 167 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEE----CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC------------
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeee----cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe------------
Confidence 345667788999999988776554332 2389999999999999999999999999999986543
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
.+..+.+|...|.+++|++ ..|
T Consensus 168 ---------------------------------------------------------~~~~~~~~~~~v~~~~~~~-~~l 189 (401)
T 4aez_A 168 ---------------------------------------------------------KLRTMAGHQARVGCLSWNR-HVL 189 (401)
T ss_dssp ---------------------------------------------------------EEEEECCCSSCEEEEEEET-TEE
T ss_pred ---------------------------------------------------------EEEEecCCCCceEEEEECC-CEE
Confidence 2334567999999999954 689
Q ss_pred EEEeCCCcEEEEeCC-CCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEEC
Q 002407 582 LSSSMDKTVRLWHLS-SKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYT 658 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~-t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~s 658 (927)
++++.|+.|++||+. ....+..+. |...|.+++|+| ++++|++++.|+.|++||+.+++.+.. ..+...|.+++|+
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 268 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence 999999999999999 455566665 999999999999 999999999999999999999887754 4577899999999
Q ss_pred CCCC-EEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCc-
Q 002407 659 PDGQ-GALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVVDGID- 732 (927)
Q Consensus 659 pdg~-~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg--s~Dg~I~VwD~~~- 732 (927)
|++. ++++++ .|+.|++||+.+++....+ .+...|++++|+|++. .++++ +.|+.|+|||...
T Consensus 269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~----------~~~~~v~~~~~s~~~~-~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTV----------DAGSQVTSLIWSPHSK-EIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp TTSTTEEEEECCTTTCEEEEEETTTCCEEEEE----------ECSSCEEEEEECSSSS-EEEEEECTTTCEEEEEEEETT
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCCEEEEE----------eCCCcEEEEEECCCCC-eEEEEeecCCCcEEEEecCCc
Confidence 9775 555554 6999999999998877654 3557899999999987 56664 3899999999654
Q ss_pred -ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 733 -LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 733 -~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
.........+...|.+++|+|++++|++++.||.|++|++.+++...
T Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 45555555677889999999999999999999999999999876544
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.3e-30 Score=292.60 Aligned_cols=285 Identities=12% Similarity=0.138 Sum_probs=219.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC--cccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES--ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~--~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
++.|.+.|++++|+|+|++||+|+.|+.|+||++.++ +....+ .+|...+.++.|+|++.++++++.++.+..
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-----SDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-----CCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-----ecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 3557889999999999999999999999999999877 444443 467889999999999999999988887743
Q ss_pred ecccccccccccccCcccccceEeecCC----CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc---EE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSD----KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT---CL 601 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~----k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~---~~ 601 (927)
|++.. ++...+.+|...|++++|+|+ .+|++++.|++|++||+.+++ +.
T Consensus 82 -----------------------wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 82 -----------------------YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp -----------------------C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred -----------------------EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 33322 346778899999999999998 789999999999999999887 35
Q ss_pred EEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC------------------CCcEEEeccCCCcEEEEEECCCC
Q 002407 602 KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP------------------ERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 602 ~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~------------------t~~~v~~~~~~~~V~sla~spdg 661 (927)
..+. |...|++++|+| ++++|++++.|+.|++||+. .++++..+.+...|.+++|+|++
T Consensus 139 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTS
T ss_pred eEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCC
Confidence 5554 899999999999 99999999999999999985 34455555777899999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-------
Q 002407 662 QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV------- 734 (927)
Q Consensus 662 ~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~------- 734 (927)
++|++++.|+.|++||+.+++...... .....|...|++++|+|++. +|++++ ++.+.+|+.....
T Consensus 218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAYPSAPEQPPRAL-----ITVKLSQLPLRSLLWANESA-IVAAGY-NYSPILLQGNESGWAHTRDL 290 (377)
T ss_dssp SCEEEEETTTEEC-CEECSTTSCEEEC-----CCEECSSSCEEEEEEEETTE-EEEEES-SSSEEEECCCC---CCSBCC
T ss_pred CEEEEEeCCCcEEEEECCCCCCcceee-----EeecCCCCceEEEEEcCCCC-EEEEEc-CCcEEEEEeCCCceEEEeee
Confidence 999999999999999999887621100 11247888999999999875 566665 4455577632100
Q ss_pred -------------------------------EEEEe--------------ecCCcceEEEEEecCC-C---EEEEEECCC
Q 002407 735 -------------------------------HKFKG--------------FRNTNSQISASLTANG-R---YVVSASEDS 765 (927)
Q Consensus 735 -------------------------------~~~~~--------------~~~~~~v~sv~fspdg-~---~Lasgs~Dg 765 (927)
..+.. ..|...|.++.+.+.. . .|+|++.||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg 370 (377)
T 3dwl_C 291 DAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG 370 (377)
T ss_dssp CSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCC
Confidence 11111 0166778888866543 3 699999999
Q ss_pred cEEEEEC
Q 002407 766 YVYVWKY 772 (927)
Q Consensus 766 ~I~IWdl 772 (927)
.|+|||+
T Consensus 371 ~i~iWdl 377 (377)
T 3dwl_C 371 RVVLWTL 377 (377)
T ss_dssp EEEEECC
T ss_pred cEEEecC
Confidence 9999986
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.7e-28 Score=283.02 Aligned_cols=319 Identities=18% Similarity=0.284 Sum_probs=243.1
Q ss_pred eeEeecCCCCE-EEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSI-WSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I-~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.+.+|.+.| .| ++++|++||+|+.||+|+|||+.+++.
T Consensus 111 ~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~------------------------------------- 151 (445)
T 2ovr_B 111 PKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKC------------------------------------- 151 (445)
T ss_dssp CEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE-------------------------------------
T ss_pred eEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcE-------------------------------------
Confidence 35678999875 55 455789999999999999999865532
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-c
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-H 606 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h 606 (927)
+..+.+|...|++++|+ .+.|++++.|++|++||+.+++++..+. |
T Consensus 152 --------------------------------~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h 198 (445)
T 2ovr_B 152 --------------------------------LRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGH 198 (445)
T ss_dssp --------------------------------EEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred --------------------------------EEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCC
Confidence 23456799999999998 4689999999999999999999998887 9
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
...|.++.|+ +++|++++.|+.|++||+.+++.+.. ..+...|.+++| ++.++++|+.||.|++||+.+++...
T Consensus 199 ~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 199 TSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp SSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999999995 46799999999999999999887764 456789999999 78899999999999999999988776
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.+ ..|...|+++.| ++. .+++++.|+.|++||............+...+.++.+ ++++|++++.||
T Consensus 274 ~~---------~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 274 TL---------QGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp EE---------CCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred Ee---------cCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCC
Confidence 64 378889999999 344 8999999999999997655444444445666776665 577999999999
Q ss_pred cEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcce
Q 002407 766 YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATG 845 (927)
Q Consensus 766 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 845 (927)
.|++||+.++......... ..+..+ +..
T Consensus 340 ~i~vwd~~~~~~~~~~~~~----------------------------------------~~~~~~------------v~~ 367 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGP----------------------------------------NKHQSA------------VTC 367 (445)
T ss_dssp CEEEEETTTCCEEEEECST----------------------------------------TSCSSC------------EEE
T ss_pred eEEEEECCCCcEEEEEccC----------------------------------------CCCCCC------------EEE
Confidence 9999999765422111000 001111 111
Q ss_pred eeecCCCCeEEEeccccccCccccccCchhhccc--------cccCCCceecccCCCCCcccCCCCCEEEEEcCCCc---
Q 002407 846 YTNSPLNGTISSATNSYFFDRISATWPEEKLVLT--------ARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGE--- 914 (927)
Q Consensus 846 ~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~--------~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~--- 914 (927)
++| ++.+|++++ .|+.+.+|+....... ..+..++. +++|+|+|.+|++|+.||+
T Consensus 368 ~~~--~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~--------~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 368 LQF--NKNFVITSS----DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW--------RIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp EEE--CSSEEEEEE----TTSEEEEEETTTCCEEEEEEECTTGGGTCEEE--------EEEECSSEEEEEEECSSSSSCC
T ss_pred EEE--CCCEEEEEe----CCCeEEEEECCCCceeeeeeccccCCCCceEE--------EEEecCCEEEEEEcccCCCCcc
Confidence 223 356777766 6778888876532111 12222222 4799999999999999998
Q ss_pred -EEEeecCCCc
Q 002407 915 -IRAYQNFGLP 924 (927)
Q Consensus 915 -IrvW~~~glP 924 (927)
|.+|+--.-|
T Consensus 434 ~l~v~df~~~~ 444 (445)
T 2ovr_B 434 KLLVLDFDVDM 444 (445)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 9999854433
No 75
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=5e-30 Score=295.88 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=217.7
Q ss_pred eEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+...+|...|+||+|+| ++++||+|+.||+|+|||+.+++..
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------- 155 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------- 155 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------------------
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------------------
Confidence 45678999999999999 5779999999999999998765321
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~- 605 (927)
.+..+.+|.+.|++|+|+| + .+|++++.|++|+|||+.++.......
T Consensus 156 ------------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 156 ------------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp ------------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred ------------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 1223457999999999998 4 689999999999999998766544443
Q ss_pred --cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCe
Q 002407 606 --HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 606 --h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~ 682 (927)
+...+.+++|+| ++++|++|+.||.|++||++...+..+..|...|++++|+|++. +|++++.|+.|+|||+++.+
T Consensus 206 ~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 206 DTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp SSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred CCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence 345688999999 99999999999999999998777666777888999999999886 78899999999999998876
Q ss_pred eeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecC----CcceEEEEEecCCC
Q 002407 683 LQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRN----TNSQISASLTANGR 756 (927)
Q Consensus 683 ~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~----~~~v~sv~fspdg~ 756 (927)
....+.. ...|...|++++|+|++. +|++++.|+.|+|||... ....+..+.+ ...+..+.|+|++.
T Consensus 285 ~~~~~~~------~~~h~~~v~~~~~spdg~-~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (435)
T 4e54_B 285 GKASFLY------SLPHRHPVNAACFSPDGA-RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN 357 (435)
T ss_dssp SSSCCSB------CCBCSSCEEECCBCTTSS-EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSS
T ss_pred ccceEEE------eeeccccccceeECCCCC-eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCC
Confidence 5443321 247889999999999987 899999999999999654 3333333322 12234567777777
Q ss_pred EEEEEE------------CCCcEEEEECCCCCCcccccc-cce-eeeeeeecCCCeEEEEecCCceeEEeecCC
Q 002407 757 YVVSAS------------EDSYVYVWKYEAESRPSRSKS-ITV-THSYEHFHCQDVSVAIPWPGVGDTWGLQDT 816 (927)
Q Consensus 757 ~Lasgs------------~Dg~I~IWdl~s~~~~~~~~~-~~~-~~~~~~~~~~~v~vavs~~g~~~i~~~~d~ 816 (927)
+++++. .++.|+|||+.++........ ... ......|++++..++...++.+.+|+..++
T Consensus 358 ~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 358 LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 777664 245799999998765443321 111 122234666655555555666666665543
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=304.30 Aligned_cols=283 Identities=11% Similarity=0.116 Sum_probs=215.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------GRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd------G~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
.+++++.+++|++|+...+++.. ...+.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.++.......
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~-~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~- 252 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHC-VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF- 252 (524)
T ss_dssp -------CEEEEEEEEETTTCCE-EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-
T ss_pred hhccCCCCceEEEEEccCCCCCc-eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-
Confidence 45788999999999987765432 223557789999999999997 5799999999999999997553211000
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS 576 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s 576 (927)
....++...+.+|...|++++|+
T Consensus 253 ---------------------------------------------------------~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 253 ---------------------------------------------------------KMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp ---------------------------------------------------------ECCCSCSEEECCTTTCEEEEEES
T ss_pred ---------------------------------------------------------eeecCceEEEEcCCCCEEEEEec
Confidence 00113445678899999999999
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc-EEEEEe-cCCceEEE--EEccCCC-CEEEEEECCCcEEEEeCCCCcEEEec-cCC-
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCI--QFNPVDD-RYFISGSLDAKVRIWSIPERQVVDWN-DLH- 649 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~-~~~~~~-h~~~V~~v--~fsp~dg-~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~- 649 (927)
+++.|++|+.||+|++||+.++. +...+. |...|++| +|+| ++ .+|++++.|++|+|||+++++++..+ .+.
T Consensus 276 ~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 276 SPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp SSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred CCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 98899999999999999999764 344454 99999999 5677 76 89999999999999999887643322 222
Q ss_pred -CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 650 -EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..|.+++|+|+++.|++++.|++|++||++++.....+ .+|...|++++|+|+++ .|++|+.|++|+||
T Consensus 355 ~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l---------~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 355 GSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL---------VSRETTITAIGVSRLHP-MVLAGSADGSLIIT 424 (524)
T ss_dssp CCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE---------EECSSCEEEEECCSSCC-BCEEEETTTEEECC
T ss_pred cCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee---------ecCCCceEEEEeCCCCC-eEEEEECCCEEEEE
Confidence 24789999999999999999999999999987765443 37999999999999987 79999999999999
Q ss_pred ECCc-----c-----------e----------------------------EEEEeecCCcceEEEEEecCCC---EEEEE
Q 002407 729 DGID-----L-----------V----------------------------HKFKGFRNTNSQISASLTANGR---YVVSA 761 (927)
Q Consensus 729 D~~~-----~-----------~----------------------------~~~~~~~~~~~v~sv~fspdg~---~Lasg 761 (927)
|... . + .......+...|.+++|+|++. +||+|
T Consensus 425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp BSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred echHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 8210 0 0 0001112456788899999964 99999
Q ss_pred ECCCcEEEEECCCC
Q 002407 762 SEDSYVYVWKYEAE 775 (927)
Q Consensus 762 s~Dg~I~IWdl~s~ 775 (927)
+.||.|+||++...
T Consensus 505 ~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 505 NSAGLLTLEYLSLE 518 (524)
T ss_dssp CTTSEEEEEECSCC
T ss_pred ccCceEEEEEcccc
Confidence 99999999999764
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.2e-28 Score=282.87 Aligned_cols=270 Identities=19% Similarity=0.297 Sum_probs=220.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.++++|. +++|++|+..+++...++ .+.+|...|++|+|+|+|++||+|+.||+|+|||+.+++.
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~---~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~----------- 181 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR----------- 181 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEE---EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------
Confidence 4555554 789999999888765443 3568999999999999999999999999999999876532
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+..+.+|...|.+++|++ ..|
T Consensus 182 ----------------------------------------------------------~~~~~~h~~~v~~~s~~~-~~l 202 (420)
T 4gga_A 182 ----------------------------------------------------------LRNMTSHSARVGSLSWNS-YIL 202 (420)
T ss_dssp ----------------------------------------------------------EEEECCCSSCEEEEEEET-TEE
T ss_pred ----------------------------------------------------------EEEEeCCCCceEEEeeCC-CEE
Confidence 335567999999998864 689
Q ss_pred EEEeCCCcEEEEeCCCCc-EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc-----EEEeccCCCcEEE
Q 002407 582 LSSSMDKTVRLWHLSSKT-CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-----VVDWNDLHEMVTA 654 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~-~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-----~v~~~~~~~~V~s 654 (927)
++++.|+.+++||..... .+..+. |...+..+.|+| ++.+|++++.|+.|++|++.+++ +.....+...|.+
T Consensus 203 ~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~ 281 (420)
T 4gga_A 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281 (420)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEE
T ss_pred EEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceee
Confidence 999999999999998654 445554 999999999999 99999999999999999998764 2345667789999
Q ss_pred EEECCCCC-EEEEE--ECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEE
Q 002407 655 ACYTPDGQ-GALVG--SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVD 729 (927)
Q Consensus 655 la~spdg~-~l~tg--s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD 729 (927)
++|+|++. .++++ +.|+.|++||+.++.....+ .+...+.++.|+|++. .+++++ .|+.|+|||
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~----------~~~~~v~~~~~~~~~~-~lv~~sg~~d~~I~iwd 350 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------DAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWK 350 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE----------ECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEE
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCCccccceee----------ccccceeeeeecCCCC-eEEEEEecCCCEEEEEE
Confidence 99999664 45543 47999999999999887764 3456799999999987 455543 789999999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
............|...|.+++|+|||++||+|+.|++|+|||+.....
T Consensus 351 ~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 351 YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 765554444445678899999999999999999999999999977543
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.4e-30 Score=292.56 Aligned_cols=316 Identities=14% Similarity=0.134 Sum_probs=228.7
Q ss_pred eecCCCceEEE-ccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCC---C---cEEEEEecCCceEEEEEccCCCCEE
Q 002407 553 FALSDKPICSF-QGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSS---K---TCLKIFSHSDYVTCIQFNPVDDRYF 623 (927)
Q Consensus 553 ~~~s~k~i~~l-~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t---~---~~~~~~~h~~~V~~v~fsp~dg~~L 623 (927)
|...++.+..+ .+|.+.|++++|+| + .+|++|+.|++|+|||+.+ + ++...+.|...|++++|+| ++++|
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 126 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAF 126 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEE
Confidence 45677888899 89999999999999 7 7899999999999999876 3 3455567999999999999 99999
Q ss_pred EEEECCCcEEEEeCC---CCcEEEecc-------------CCCcEEEEE--ECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 624 ISGSLDAKVRIWSIP---ERQVVDWND-------------LHEMVTAAC--YTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 624 ~sgs~Dg~I~IWDl~---t~~~v~~~~-------------~~~~V~sla--~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
++++.|+.|++||+. +++.+.... +...+.++. +++++.+|++++.|+.|++||+++++...
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 999999999999994 444433221 455677776 66889999999999999999999988877
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe-ecCCcceEEEEEe----cCCCEEEE
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-FRNTNSQISASLT----ANGRYVVS 760 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fs----pdg~~Las 760 (927)
.+.. ..|...|++++|+|++. +|++++.|+.|++||.......... ..+...|.+++|+ +++.+|++
T Consensus 207 ~~~~-------~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s 278 (437)
T 3gre_A 207 IIEN-------SPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278 (437)
T ss_dssp EEEC-------CGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred EEcc-------CCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence 6531 12778999999999976 8999999999999998765443332 2456789999665 56889999
Q ss_pred EECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcc
Q 002407 761 ASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDC 840 (927)
Q Consensus 761 gs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~ 840 (927)
++.||.|+|||+.++.................|.+. +..+.. ..+.+....
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~l~~-----------~~~~~~~~~ 329 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI------------------EKGLEE-----------LNFCGIRSL 329 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB------------------CSSGGG-----------CCCCCCCSG
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc------------------cccccc-----------ceecccccC
Confidence 999999999999876533222111100000111110 000000 001111122
Q ss_pred cCcceeeecCCCCeEEEeccccccCccccccCchhhcc---ccc------------------------------------
Q 002407 841 RSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVL---TAR------------------------------------ 881 (927)
Q Consensus 841 ~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~---~~~------------------------------------ 881 (927)
..+..++|+ ++.+|++++ .|+.+++|+...... ..+
T Consensus 330 ~~v~~l~~~-~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 330 NALSTISVS-NDKILLTDE----ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp GGGCCEEEE-TTEEEEEEG----GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred CceEEEEEC-CceEEEecC----CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 334556789 778999987 789999999764321 112
Q ss_pred -cCCCceecccCCCCCcccCCC--CCEEEEEcCCCcEEEee
Q 002407 882 -NRSPRTSLDISNGISSSISAW--GMVIVTAGLRGEIRAYQ 919 (927)
Q Consensus 882 -~~s~v~s~~~~~~~~~a~S~d--G~vLvTgs~DG~IrvW~ 919 (927)
|...+. +++++++ +.+||||+.||.|++|+
T Consensus 405 ~h~~~I~--------~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIIN--------SISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEE--------EEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccee--------eEeeeccCCceEEEEEcCCceEEEeC
Confidence 222222 4677776 88999999999999996
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.3e-29 Score=277.50 Aligned_cols=290 Identities=12% Similarity=0.091 Sum_probs=234.1
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCC-eecccccCCceeee
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPT-SLSPKHLDNHLEKK 530 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~-~la~~~~~~~i~~~ 530 (927)
..+|.+.|++++|+|++++||+++.|+.|+||++.++.....+.. ...+...+.++.|+|++. +++++..++.+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--- 81 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--SLRYKHPLLCCNFIDNTDLQIYVGTVQGEI--- 81 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--EEECSSCEEEEEEEESSSEEEEEEETTSCE---
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee--eeecCCceEEEEECCCCCcEEEEEcCCCeE---
Confidence 368999999999999999999999999999999988762221111 135677899999999999 89988888877
Q ss_pred cccccccccccccCcccccceEeec-CCCceEEEcc--CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC---------C
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQG--HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS---------K 598 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~g--H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t---------~ 598 (927)
.+|++ .......+.+ |...|.+++|+|.+.|++++.|+.|++||+.+ +
T Consensus 82 --------------------~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 82 --------------------LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp --------------------EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred --------------------EEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccC
Confidence 55666 5566678888 99999999999977899999999999999988 7
Q ss_pred cEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcE---EEeccCCCcEEEEEECC-CCCEEEEEECCCeE
Q 002407 599 TCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQV---VDWNDLHEMVTAACYTP-DGQGALVGSYKGSC 673 (927)
Q Consensus 599 ~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~---v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I 673 (927)
+++..+.|...|.+++|+| ++ |++++.|+.|++||+.+ +.. .....+...+.+++|+| ++++|++++.+|.|
T Consensus 142 ~~~~~~~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 142 LNSNNTKVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp SCSSSSSSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred CeeeEEeeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 7777777999999999998 55 99999999999999988 442 23456678999999999 99999999999999
Q ss_pred EEEECCCC------eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC-Ccce
Q 002407 674 HLYNTSEN------KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN-TNSQ 746 (927)
Q Consensus 674 ~IwDl~~~------~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~-~~~v 746 (927)
++|++... +....+...........|...|++++|+|++. +|++++.|+.|++||............+ ...|
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 297 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceEEEEcCccHhHhhhhhcccCCCc
Confidence 99999876 33333221100000113455999999999887 7999999999999998766555555555 7788
Q ss_pred EEEEEecCCCEEEEEECCCc-EEEEEC
Q 002407 747 ISASLTANGRYVVSASEDSY-VYVWKY 772 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~-I~IWdl 772 (927)
.+++ |++++|++++.||. .+.|..
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred eEec--CCCCeEEEEecCCcccccccc
Confidence 8888 99999999999998 555554
No 80
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4.1e-29 Score=282.16 Aligned_cols=298 Identities=13% Similarity=0.057 Sum_probs=207.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCC-------cEEEEecCcCcccce--ee---cccccCccccEEEEccCCCCCeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDC-------VIHVWQVVESERKGE--LL---EKQEDGHLNMLLLANGSPEPTSLSPKHL 523 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~Dg-------tVrVWdv~~~~~~~~--l~---~~~~~~~~~~v~~v~~spd~~~la~~~~ 523 (927)
.-+|++++|+|||++||+||.|. .|+||++........ +. ......+...+.++++. +..++.+..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 34899999999999999998644 599999976543211 10 11122333344444433 233333222
Q ss_pred CCceeeecccccccccccccCcccccceEeecCC--Cc---e-----EEEccCCCCEEEEEecCC-cEEEE--EeCCCcE
Q 002407 524 DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KP---I-----CSFQGHLDDVLDLSWSKS-QHLLS--SSMDKTV 590 (927)
Q Consensus 524 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~---i-----~~l~gH~~~V~~l~~spd-~~L~S--gs~DgtV 590 (927)
+........ ..+.. .++|.+.. .. + .....+...+.+++|+|| .+|++ ++.|++|
T Consensus 92 ~~~~~l~s~---------~~d~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i 159 (365)
T 4h5i_A 92 ENSTKITQG---------KGNKH---LRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM 159 (365)
T ss_dssp CCHHHHHHT---------SCCCC---EEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE
T ss_pred CCccEEEEe---------cCCCc---EEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE
Confidence 211100000 00000 01121110 00 1 112235566899999999 45544 4579999
Q ss_pred EEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE---eccCCCcEEEEEECCCCCEEEEE
Q 002407 591 RLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD---WNDLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 591 ~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~~~~~~V~sla~spdg~~l~tg 667 (927)
+|||+.+++++..+.|...|.+|+|+| ++++|++++.+ .+++|+..+++.+. ...+...|.+++|+|++++++++
T Consensus 160 ~iwd~~~~~~~~~~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred EEeECCCCcEEEEeCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999 99999998854 56677766666543 23455789999999999999999
Q ss_pred ECCC----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEe-ecC
Q 002407 668 SYKG----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKG-FRN 742 (927)
Q Consensus 668 s~Dg----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~-~~~ 742 (927)
+.++ .+++|++.......... .....|...|++++|+|++. +|++++.|++|+|||..+....... ..|
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRS-----KQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEE-----EEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred ecCCcceeEEeecccccceecceee-----eeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 9887 68889987765432211 11247889999999999987 8999999999999998766554443 346
Q ss_pred CcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 743 TNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 743 ~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
...|++++|+|||++||+++.|++|+||++...
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 888999999999999999999999999999654
No 81
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2.6e-28 Score=282.46 Aligned_cols=324 Identities=16% Similarity=0.261 Sum_probs=249.7
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...++++|..++.|++|+..+++ ....+.+|.+.|++++|+|++ +|++|+.||+|+|||+.+++....+
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~----- 199 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKK-----FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF----- 199 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTE-----EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-----
T ss_pred CCCEEEEEcCCCcEEEEECCCCc-----EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-----
Confidence 34588999999999999987664 346678999999999999988 9999999999999999998766664
Q ss_pred cCccccEEEEccC--CCCCeecccccCCceeeecccccccccccccCcccccceEee--cCCCceEEEccCCCCEEEEEe
Q 002407 500 DGHLNMLLLANGS--PEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFA--LSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 500 ~~~~~~v~~v~~s--pd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~--~s~k~i~~l~gH~~~V~~l~~ 575 (927)
.++...+.++.+. +++.+++++..++.+..+................ .+..... .....+..+.+|...|.++..
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 278 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVLRGHMASVRTVSG 278 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEECCCSSCEEEEEE
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEccCccceEEEEcC
Confidence 4577788888877 5788999999998887665443221111000000 0000000 112246678999999999854
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEE
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVT 653 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~ 653 (927)
. ..+|++++.|++|++||+.+++++..+. |...|.+++|+| ++++|++|+.|+.|++||+.+++++..+ .|...|.
T Consensus 279 ~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 356 (464)
T 3v7d_B 279 H-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356 (464)
T ss_dssp E-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred C-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence 3 2789999999999999999999998887 999999999999 9999999999999999999999887654 5678999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 654 AACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 654 sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+++|+ +.+|++++.||.|++||+.+....... .+...+..++|++++. +|++++ |+.|++||....
T Consensus 357 ~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 357 LLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------HHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----------ECTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTC
T ss_pred EEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----------cCCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCC
Confidence 99997 579999999999999999987655442 3556777889999876 677777 999999997665
Q ss_pred eEEEE-eecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 734 VHKFK-GFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 734 ~~~~~-~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..... ...+...|.+++|+ +..++++++.||.+.+|-+
T Consensus 423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 44433 34567889999997 4455666677777665543
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=1.4e-28 Score=274.26 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=200.0
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
+..|...|++++|+|+ .+|++++.|+.|++||+.+++ .+..+. |...|.+++|+| ++++|++++.|+.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECC
Confidence 4459999999999999 778999999999999999987 777776 999999999999 99999999999999999998
Q ss_pred CCcEEE---eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ERQVVD---WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~~~v~---~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+++... ...+...|.+++|+|++++|++++.|+.|++||+.......... .....|...|++++|+|++. +
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~-~ 156 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-----HIKKPIRSTVLSLDWHPNSV-L 156 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-----EECTTCCSCEEEEEECTTSS-E
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee-----eeecccCCCeeEEEEcCCCC-E
Confidence 887443 45677899999999999999999999999999998876321111 01146788999999999876 8
Q ss_pred EEEEECCCcEEEEECC------------------cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 716 VLVTSADSRIRVVDGI------------------DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~------------------~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
|++++.|+.|++||.. ..........+...+.+++|+|++++|++++.|+.|++||+.++..
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 9999999999999942 2223333334677899999999999999999999999999998776
Q ss_pred cccccccceeeeeeeecCCCeEEEEecCCceeEEeecC
Q 002407 778 PSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d 815 (927)
...............|++++..++...++.+.+|....
T Consensus 237 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 237 VATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred eEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 55544444344556667777777777778888887766
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.9e-29 Score=285.53 Aligned_cols=280 Identities=16% Similarity=0.251 Sum_probs=227.8
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCcCcccceeeccccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL-DGRYLASAGEDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp-dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
.+++++..++.|++|+....... ......+.+|.+.|++|+|+| ++++||+|+.||+|+||++.++.....+
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~-~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~------ 120 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRV-DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL------ 120 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEEC-CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB------
T ss_pred EEEEEEcCCCEEEEEECccCCCC-CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc------
Confidence 34556888999999997543211 122345789999999999999 9999999999999999999765422110
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-- 578 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-- 578 (927)
.+++..+.+|...|++++|+|+
T Consensus 121 --------------------------------------------------------~~~~~~~~~h~~~v~~~~~~p~~~ 144 (402)
T 2aq5_A 121 --------------------------------------------------------REPVITLEGHTKRVGIVAWHPTAQ 144 (402)
T ss_dssp --------------------------------------------------------CSCSEEEECCSSCEEEEEECSSBT
T ss_pred --------------------------------------------------------CCceEEecCCCCeEEEEEECcCCC
Confidence 1345577889999999999998
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEE--e-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCc-E
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIF--S-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEM-V 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~--~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~-V 652 (927)
.+|++++.|++|++||+.+++++..+ . |...|++++|+| ++++|++++.|+.|++||+++++.+..+ .+... +
T Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 223 (402)
T 2aq5_A 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRP 223 (402)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSC
T ss_pred CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcc
Confidence 47999999999999999999999888 4 999999999999 9999999999999999999999887654 44443 8
Q ss_pred EEEEECCCCCEEEEE---ECCCeEEEEECCCCeee-eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 653 TAACYTPDGQGALVG---SYKGSCHLYNTSENKLQ-QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 653 ~sla~spdg~~l~tg---s~Dg~I~IwDl~~~~~~-~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
..++|+|++.+|++| +.++.|++||+.+.... .... ..+...|.+++|+|++..++++++.|+.|++|
T Consensus 224 ~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 224 VHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE--------LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp CEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE--------CCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred eEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe--------ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 999999999999999 78999999999886542 1111 25667899999999988444566689999999
Q ss_pred ECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 729 DGID---LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 729 D~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|... ....+..+.+...+.+++|+|++.++++ .++.+++|++.++
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 9543 2566677767788999999999998875 5679999999864
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.5e-29 Score=283.43 Aligned_cols=253 Identities=19% Similarity=0.348 Sum_probs=197.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.|.+.|++|+|+|+|++||+|+.||.|+||++.+++...... ..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~----------------------------~~-------- 69 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS----------------------------RG-------- 69 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC----------------------------CC--------
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc----------------------------cc--------
Confidence 378999999999999999999999999999987654211100 00
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCC------------CCEEEEEecCC---cEEEEEeCCCcEEEEeCCCC
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHL------------DDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSK 598 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~------------~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~ 598 (927)
..+.+..+.+|. ..|++++|+|+ ..|++++.|++|++||+.++
T Consensus 70 ----------------------~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~ 127 (447)
T 3dw8_B 70 ----------------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER 127 (447)
T ss_dssp ----------------------CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred ----------------------ceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence 012345666787 88999999998 48999999999999999764
Q ss_pred cEE---------------------------------------EEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeC
Q 002407 599 TCL---------------------------------------KIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (927)
Q Consensus 599 ~~~---------------------------------------~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl 637 (927)
... ..+ .|...|++++|+| ++++|++| .|+.|++||+
T Consensus 128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~ 205 (447)
T 3dw8_B 128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINLWHL 205 (447)
T ss_dssp EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEET
T ss_pred cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEEC
Confidence 432 122 3999999999999 99999998 7999999999
Q ss_pred CC-CcEEE--------eccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCCCee----eeecccccccccccCCC---
Q 002407 638 PE-RQVVD--------WNDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSENKL----QQKSPINLQNKKKRSHQ--- 700 (927)
Q Consensus 638 ~t-~~~v~--------~~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~~~~----~~~~~i~~~~~~~~~h~--- 700 (927)
.+ ++.+. ...+...|++++|+|++ .+|++|+.||.|++||+++++. ...+ ..|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~ 276 (447)
T 3dw8_B 206 EITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF---------EEPEDPS 276 (447)
T ss_dssp TEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE---------CCC----
T ss_pred CCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe---------ccCCCcc
Confidence 84 44444 33667889999999998 9999999999999999998875 2222 2343
Q ss_pred ---------CCeEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEeecCCcc-------------eEEEEEecCC
Q 002407 701 ---------RKITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGFRNTNS-------------QISASLTANG 755 (927)
Q Consensus 701 ---------~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~-------------v~sv~fspdg 755 (927)
..|++++|+|++. +|++++. +.|+|||... ....+..+..... +..++|+|++
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 3899999999887 7888888 9999999653 4455555432111 3348999999
Q ss_pred CEEEEEECCCcEEEEECCCCCC
Q 002407 756 RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 756 ~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
++|++++.||.|+|||+.++..
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE
T ss_pred CEEEEeccCCEEEEEEcCCCcc
Confidence 9999999999999999988653
No 85
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.4e-29 Score=282.28 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=187.3
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
+..|.+.|++++|+|+ .+|++++.|++|+|||+.++ +++..+. |...|++++|+| ++++|++++.|+.|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Confidence 4457789999999999 78999999999999999988 5666665 999999999999 89999999999999999999
Q ss_pred CCc----EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee---eeecccccccccccCCCCCeEEEEEcCC
Q 002407 639 ERQ----VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 639 t~~----~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+++ ......+...|.+++|+|++++|++++.|+.|++||+.+++. ...+. ..|...|++++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK--------RPLRSTILSLDWHPN 157 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC--------SSCCSCEEEEEECTT
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee--------cccCCCeEEEEEcCC
Confidence 876 555677888999999999999999999999999999988763 22221 138899999999998
Q ss_pred CCcEEEEEECCCcEEEEECCc-----------------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 712 SSSEVLVTSADSRIRVVDGID-----------------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~-----------------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+. +|++++.|+.|++||... .........+...|.+++|+|++++|++++.|+.|+|||+.+
T Consensus 158 ~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 158 NV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 76 899999999999999631 112222226678899999999999999999999999999999
Q ss_pred CCC----cccccccceeeeeeeecCCCeEEEEecCCceeEEeec
Q 002407 775 ESR----PSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQ 814 (927)
Q Consensus 775 ~~~----~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~ 814 (927)
+.. ......+........|++++..++...++...+|...
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 876 3444444444455667777777777666666666544
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.9e-28 Score=274.52 Aligned_cols=330 Identities=15% Similarity=0.179 Sum_probs=225.5
Q ss_pred CCceEEEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcEEEEEe--------------cCCceEEEEEccCCC
Q 002407 557 DKPICSFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--------------HSDYVTCIQFNPVDD 620 (927)
Q Consensus 557 ~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------------h~~~V~~v~fsp~dg 620 (927)
.+....+.+|.+.|++++|+| + .+|++++.|+.|++||+.+++....+. |...|.+++|+|.++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 356677889999999999999 7 789999999999999999876554443 899999999999777
Q ss_pred CEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCC---CCEEEEEECCCeEEEEECCCCeeeeeccccccccccc
Q 002407 621 RYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 621 ~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
.+|++++.|+.|++||+.+++.+....+...+.+++++|. +.++++++.++.|++||+.+++....+ .
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---------~ 183 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL---------Q 183 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE---------C
T ss_pred cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee---------c
Confidence 8999999999999999999999988888999999999984 459999999999999999988766554 3
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce---EEEEe-------------ecCCcceEEEEEecCCCEEEEE
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV---HKFKG-------------FRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~---~~~~~-------------~~~~~~v~sv~fspdg~~Lasg 761 (927)
.|...|++++|+|++..+|++++.|+.|++||..... ..+.. ..+...+.+++|+|++++|+++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 7889999999999988779999999999999975432 22211 2456789999999999999999
Q ss_pred ECCCcEEEEECCCCCCcccccccc------eeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceecc
Q 002407 762 SEDSYVYVWKYEAESRPSRSKSIT------VTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEIS 835 (927)
Q Consensus 762 s~Dg~I~IWdl~s~~~~~~~~~~~------~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~ 835 (927)
+.||.|++||+.++.......... ..............++...++.+.+|........ ..+.
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~------------~~~~ 331 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI------------TMLK 331 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE------------EEEC
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce------------eeec
Confidence 999999999999876543321110 0011111122334445556666666665443221 1111
Q ss_pred CCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccccccCCCceecccCCCCCcccC-CCCCEEEEEcCCCc
Q 002407 836 GNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLTARNRSPRTSLDISNGISSSIS-AWGMVIVTAGLRGE 914 (927)
Q Consensus 836 ~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~~~~~s~v~s~~~~~~~~~a~S-~dG~vLvTgs~DG~ 914 (927)
++. ..+..++|+|++.+|++++ .|+.+.+|+.+............... .+. .....+.+++.||.
T Consensus 332 ~~~--~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 397 (408)
T 4a11_B 332 GHY--KTVDCCVFQSNFQELYSGS----RDCNILAWVPSLYEPVPDDDETTTKS--------QLNPAFEDAWSSSDEEGG 397 (408)
T ss_dssp CCS--SCEEEEEEETTTTEEEEEE----TTSCEEEEEECC----------------------------------------
T ss_pred cCC--CeEEEEEEcCCCCEEEEEC----CCCeEEEEeCCCCCccCCCCceEecc--------ccccccceeecccCccCc
Confidence 221 2344567999999999987 78999999987543222111111111 111 24455677888999
Q ss_pred EEEeecC
Q 002407 915 IRAYQNF 921 (927)
Q Consensus 915 IrvW~~~ 921 (927)
|++|.+.
T Consensus 398 ~~~W~~~ 404 (408)
T 4a11_B 398 TSAWSHP 404 (408)
T ss_dssp -------
T ss_pred eeecCCc
Confidence 9999854
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2e-28 Score=271.62 Aligned_cols=296 Identities=11% Similarity=0.072 Sum_probs=223.8
Q ss_pred EEccCCCCEEEEEecC-----CcEEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEccCC----CCEEEEE
Q 002407 562 SFQGHLDDVLDLSWSK-----SQHLLSSSMDKTVRLWHLSSKTCLKIFS------HSDYVTCIQFNPVD----DRYFISG 626 (927)
Q Consensus 562 ~l~gH~~~V~~l~~sp-----d~~L~Sgs~DgtV~lWDl~t~~~~~~~~------h~~~V~~v~fsp~d----g~~L~sg 626 (927)
...+|...|++++|+| +..+++++.++.|++||+.+++.+..+. |...|++++|+| + +.+|+++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEe
Confidence 3458999999999998 2568888888899999999888776664 567899999999 7 6799999
Q ss_pred ECCCcEEEEeCCCCcEEEec-cCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 627 SLDAKVRIWSIPERQVVDWN-DLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 627 s~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
+.||.|++||+.+++.+..+ .+...|.+++|+| ++.+|++++.||.|++||+.+++....+.. ...|...|+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~v~ 165 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------VEGHRDEVL 165 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS------TTSCSSCEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------cccccCcee
Confidence 99999999999998877655 4778999999999 999999999999999999999887765421 137889999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEE----------------------------EEeecCCcceEEEEEecCCC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK----------------------------FKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~----------------------------~~~~~~~~~v~sv~fspdg~ 756 (927)
+++|+|++. +|++++.|+.|++||....... .....+...|.+++|+ ++
T Consensus 166 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 242 (366)
T 3k26_A 166 SADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD 242 (366)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred EEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence 999999876 8999999999999996532111 0111256778999998 77
Q ss_pred EEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccC
Q 002407 757 YVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISG 836 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~ 836 (927)
+|++++.|+.|++||+.+.......... ......+ +..+. .+.
T Consensus 243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~~~~-----------------~~~~~---~~~-------- 285 (366)
T 3k26_A 243 LILSKSCENAIVCWKPGKMEDDIDKIKP---------SESNVTI-----------------LGRFD---YSQ-------- 285 (366)
T ss_dssp EEEEECSSSEEEEEEESSTTCCGGGCCT---------TCCCEEE-----------------EEEEE---CSS--------
T ss_pred EEEEEecCCEEEEEeCCCcccccccccc---------CCcchhe-----------------ecccc---ccC--------
Confidence 9999999999999999876543221000 0000000 00000 111
Q ss_pred CCcccCcceeeecCC--CCeEEEeccccccCccccccCchhhcc-------cccc--CCCceecccCCCCCcccCCCCCE
Q 002407 837 NEDCRSATGYTNSPL--NGTISSATNSYFFDRISATWPEEKLVL-------TARN--RSPRTSLDISNGISSSISAWGMV 905 (927)
Q Consensus 837 ~~~~~~~~~~~fSPd--g~~Lasas~~~~~d~~v~~W~~e~l~~-------~~~~--~s~v~s~~~~~~~~~a~S~dG~v 905 (927)
.....++|+|+ +.+|++++ .|+.+.+|+...... ...| ..++. +++|+|+|++
T Consensus 286 ----~~v~~~~~s~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~s~~~~~ 349 (366)
T 3k26_A 286 ----CDIWYMRFSMDFWQKMLALGN----QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIR--------QTSFSRDSSI 349 (366)
T ss_dssp ----CCSSCCCCEECTTSSEEEEEC----TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEE--------EEEECTTSSE
T ss_pred ----CcEEEEEEcCCCCCcEEEEEe----cCCcEEEEECCCCCCccccceEEcccccCCceE--------EEEeCCCCCe
Confidence 11223458899 99999987 788999999764311 1222 23333 5799999999
Q ss_pred EEEEcCCCcEEEeec
Q 002407 906 IVTAGLRGEIRAYQN 920 (927)
Q Consensus 906 LvTgs~DG~IrvW~~ 920 (927)
|+||+.||.|++|+.
T Consensus 350 l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 350 LIAVCDDASIWRWDR 364 (366)
T ss_dssp EEEEETTSEEEEEEC
T ss_pred EEEEeCCCEEEEEEe
Confidence 999999999999984
No 88
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.3e-27 Score=260.25 Aligned_cols=239 Identities=15% Similarity=0.242 Sum_probs=192.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccc
Q 002407 459 IWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINR 538 (927)
Q Consensus 459 I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~ 538 (927)
..+|+||+++ +||+| .|++|+|||+.+++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-------------------------------------------- 61 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-------------------------------------------- 61 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE--------------------------------------------
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE--------------------------------------------
Confidence 4679999986 77776 4999999999877543322
Q ss_pred cccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEc
Q 002407 539 KSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFN 616 (927)
Q Consensus 539 ~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fs 616 (927)
.+.+|...|++++|+|+ .+|++|+.|++|++||+.+++++..+. |...+.++.+
T Consensus 62 -----------------------~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~- 117 (318)
T 4ggc_A 62 -----------------------QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW- 117 (318)
T ss_dssp -----------------------ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE-
T ss_pred -----------------------EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec-
Confidence 33468889999999998 789999999999999999999998887 8888887766
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc
Q 002407 617 PVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK 694 (927)
Q Consensus 617 p~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~ 694 (927)
++.+|++++.++.+++|+...... .....+...+..+.+.+++++|++++.|+.|++||+.+++.......
T Consensus 118 --~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 190 (318)
T 4ggc_A 118 --NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ----- 190 (318)
T ss_dssp --ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE-----
T ss_pred --CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee-----
Confidence 457999999999999999887543 34567778999999999999999999999999999988664332211
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEE--EECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE--CCCcEEEE
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLV--TSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS--EDSYVYVW 770 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Lls--gs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs--~Dg~I~IW 770 (927)
....+...|.++++.|.+...+.+ ++.++.|++||......... ..+...+..+.|++++..+++++ .|+.|+||
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iw 269 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIW 269 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE-EECSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc-ccceeeeeeeeecccccceEEEEEcCCCEEEEE
Confidence 124677889999999988766544 45789999999765444333 33566789999999999988765 79999999
Q ss_pred ECCCC
Q 002407 771 KYEAE 775 (927)
Q Consensus 771 dl~s~ 775 (927)
|+.++
T Consensus 270 d~~~~ 274 (318)
T 4ggc_A 270 KYPTM 274 (318)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 98764
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.9e-27 Score=259.07 Aligned_cols=268 Identities=18% Similarity=0.270 Sum_probs=214.9
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
++++| .+++|++|+..+++....+ .+.+|...|++|+|+|+|++||+|+.||+|+||++.+++.
T Consensus 38 ~lAvg-~D~tV~iWd~~tg~~~~~~---~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~------------ 101 (318)
T 4ggc_A 38 VLAVA-LDNSVYLWSASSGDILQLL---QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR------------ 101 (318)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEE---ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE------------
T ss_pred EEEEE-eCCEEEEEECCCCCEEEEE---EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee------------
Confidence 44555 4789999999887654433 4568999999999999999999999999999999876542
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
+..+.+|...+.++.+.+ ..|+
T Consensus 102 ---------------------------------------------------------~~~~~~h~~~~~~~~~~~-~~l~ 123 (318)
T 4ggc_A 102 ---------------------------------------------------------LRNMTSHSARVGSLSWNS-YILS 123 (318)
T ss_dssp ---------------------------------------------------------EEEEECCSSCEEEEEEET-TEEE
T ss_pred ---------------------------------------------------------EEEecCccceEEEeecCC-CEEE
Confidence 234557888888777654 6799
Q ss_pred EEeCCCcEEEEeCCCCcE-EEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-----EEeccCCCcEEEE
Q 002407 583 SSSMDKTVRLWHLSSKTC-LKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-----VDWNDLHEMVTAA 655 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~-~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-----v~~~~~~~~V~sl 655 (927)
+++.++.+++|+...... +..+. |...+..+.|.+ ++++|++++.|+.|++||+.+++. .....+...|.++
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~ 202 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEE
Confidence 999999999999987643 44444 999999999999 999999999999999999987652 3455566789999
Q ss_pred EECCCCCEE---EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE-ECCCcEEEEECC
Q 002407 656 CYTPDGQGA---LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT-SADSRIRVVDGI 731 (927)
Q Consensus 656 a~spdg~~l---~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg-s~Dg~I~VwD~~ 731 (927)
+++|++..+ ++++.++.|++||.......... .+...+..+.|.|.+..+++++ +.|+.|+|||..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV----------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp EECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE----------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred EecCCCCcEEEEEecCCCCEEEEEecccccccccc----------cceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence 999976543 35667899999999987766542 5667899999999987444333 379999999976
Q ss_pred cceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 732 DLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 732 ~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+.........|...|.+++|+|+|++||+|+.||+|+|||+...
T Consensus 273 ~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 273 TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 55444444456788999999999999999999999999999764
No 90
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.4e-27 Score=273.98 Aligned_cols=240 Identities=15% Similarity=0.224 Sum_probs=195.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.++.|+||++ ++||+|. |++|+|||+.+++....
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-------------------------------------------- 140 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-------------------------------------------- 140 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE--------------------------------------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE--------------------------------------------
Confidence 3567999986 4787775 99999999987753322
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEE
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQF 615 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~f 615 (927)
..+.+|...|++|+|+|+ .+|++|+.|++|+|||+.+++++..+. |...|.++.+
T Consensus 141 -----------------------~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~ 197 (420)
T 4gga_A 141 -----------------------LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW 197 (420)
T ss_dssp -----------------------EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred -----------------------EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee
Confidence 134568889999999999 789999999999999999999998887 9999999888
Q ss_pred ccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccc
Q 002407 616 NPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 616 sp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
+ +.+|++|+.|+.+++||...... .....|...+..+.++|++.++++++.|+.|++|++.+++......
T Consensus 198 ~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----- 269 (420)
T 4gga_A 198 N---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----- 269 (420)
T ss_dssp E---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS-----
T ss_pred C---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee-----
Confidence 5 57999999999999999886432 3456777899999999999999999999999999998775432211
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEE--ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE--CCCcEEE
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVT--SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS--EDSYVYV 769 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsg--s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs--~Dg~I~I 769 (927)
.....|...|.+++|+|.+..+++++ +.|+.|++||........... ....+.++.|+++++.|++++ .|+.|+|
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 11247888999999999988777765 479999999977655444333 456788999999999998876 7999999
Q ss_pred EECCCC
Q 002407 770 WKYEAE 775 (927)
Q Consensus 770 Wdl~s~ 775 (927)
||+.++
T Consensus 349 wd~~~~ 354 (420)
T 4gga_A 349 WKYPTM 354 (420)
T ss_dssp EETTTC
T ss_pred EECCCC
Confidence 998764
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=5.2e-28 Score=272.82 Aligned_cols=299 Identities=8% Similarity=0.069 Sum_probs=227.8
Q ss_pred CCeEEEccCceEEEEeccCccccc-ceeeeeEeecCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEecCcCcccc
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLT-ALYKCQEIQAHNGSIWSIKFSLD----G---RYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~-~l~~~q~L~gH~~~I~~vafSpd----G---~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
..+++++..++.|++|+....+.. .......+.+|...|++|+|+|+ | ++|++++.|+.|+||++.+++...
T Consensus 26 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~ 105 (397)
T 1sq9_A 26 NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK 105 (397)
T ss_dssp SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC
T ss_pred CCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc
Confidence 378899999999999998876511 11234567899999999999999 9 999999999999999999887521
Q ss_pred eeecccccCc-----cccEEEEccC----CCCCe-ecccccCCceeeecccccccccccccCcccccceEeecCCCceEE
Q 002407 493 ELLEKQEDGH-----LNMLLLANGS----PEPTS-LSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICS 562 (927)
Q Consensus 493 ~l~~~~~~~~-----~~~v~~v~~s----pd~~~-la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~ 562 (927)
.........+ ...+.++.|+ |++.. ++++..++.+..+........... .. +.-.+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~---------~~~~~~~~ 174 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS--LT---------LNWSPTLE 174 (397)
T ss_dssp CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH--TT---------TCCCCEEE
T ss_pred cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc--ce---------eeccCcce
Confidence 1111112334 4789999999 99998 998888887755433220000000 00 00011124
Q ss_pred E-------ccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----c---CCceEEEEEccCCCCEEEEEEC
Q 002407 563 F-------QGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----H---SDYVTCIQFNPVDDRYFISGSL 628 (927)
Q Consensus 563 l-------~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----h---~~~V~~v~fsp~dg~~L~sgs~ 628 (927)
+ ..|...|.+++|+|++.|++++.|+.|++||+.+++++..+. | ...|.+++|+| ++++|++++.
T Consensus 175 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~ 253 (397)
T 1sq9_A 175 LQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHD 253 (397)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEE
T ss_pred eeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEec
Confidence 4 458999999999998888899999999999999999888876 5 89999999999 9999999999
Q ss_pred C---CcEEEEeCCCCcEEEecc--------------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 629 D---AKVRIWSIPERQVVDWND--------------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 629 D---g~I~IWDl~t~~~v~~~~--------------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
| +.|++||+.+++.+..+. +...|.+++|+|++++|++++.||.|++||+.+++....+....
T Consensus 254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 333 (397)
T 1sq9_A 254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 333 (397)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc
Confidence 9 999999999988776554 67899999999999999999999999999999998877654211
Q ss_pred cc------------ccccCCCCCeEEEEEcCCCC---------cEEEEEECCCcEEEEECC
Q 002407 692 QN------------KKKRSHQRKITGFQFAPGSS---------SEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 692 ~~------------~~~~~h~~~Vtsl~fspdg~---------~~Llsgs~Dg~I~VwD~~ 731 (927)
.. .....|...|++++|+|++. .+|++++.|+.|++||..
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 00 00012388999999999973 489999999999999953
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-27 Score=271.64 Aligned_cols=240 Identities=13% Similarity=0.221 Sum_probs=196.9
Q ss_pred eecCCCCEE--EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 452 IQAHNGSIW--SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 452 L~gH~~~I~--~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
..+|...+. +++|++ ..|++++.|+.|+||++.+++....+
T Consensus 87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~----------------------------------- 129 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA----------------------------------- 129 (401)
T ss_dssp CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE-----------------------------------
T ss_pred CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee-----------------------------------
Confidence 346766544 455554 56888899999999999766432211
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cC
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HS 607 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~ 607 (927)
...|...|++++|+|+ .+|++++.||.|++||+.+++.+..+. |.
T Consensus 130 ---------------------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 176 (401)
T 4aez_A 130 ---------------------------------ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQ 176 (401)
T ss_dssp ---------------------------------ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---------------------------------ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCC
Confidence 1137889999999998 789999999999999999999988886 99
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
..|.+++|+ +++|++++.|+.|++||++. ...+ ....+...|.+++|+|++++|++++.|+.|++||+.++....
T Consensus 177 ~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 253 (401)
T 4aez_A 177 ARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF 253 (401)
T ss_dssp SCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE
T ss_pred CceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE
Confidence 999999995 47999999999999999984 4433 456678899999999999999999999999999999887765
Q ss_pred ecccccccccccCCCCCeEEEEEcCCCCcEEEEEE--CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-
Q 002407 686 KSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS--ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS- 762 (927)
Q Consensus 686 ~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs--~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs- 762 (927)
.+ ..|...|.+++|+|++..++++++ .|+.|++||.......... .+...+.+++|+|++++|++++
T Consensus 254 ~~---------~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~g 323 (401)
T 4aez_A 254 TK---------TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHG 323 (401)
T ss_dssp EE---------CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEECSSSSEEEEEEC
T ss_pred Ee---------cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEECCCCCeEEEEee
Confidence 54 378889999999998887788776 7999999997654333222 3556799999999999999954
Q ss_pred -CCCcEEEEECCC
Q 002407 763 -EDSYVYVWKYEA 774 (927)
Q Consensus 763 -~Dg~I~IWdl~s 774 (927)
.||.|+||++.+
T Consensus 324 ~~dg~i~v~~~~~ 336 (401)
T 4aez_A 324 FPDNNLSIWSYSS 336 (401)
T ss_dssp TTTCEEEEEEEET
T ss_pred cCCCcEEEEecCC
Confidence 899999999865
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-29 Score=292.13 Aligned_cols=260 Identities=15% Similarity=0.150 Sum_probs=204.3
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
.-...|.+|+|+|||++|||++.|++|+ |....+ .+ .+|...++.++|+|++ .++.+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l-----~gh~~~v~~V~FsPdg-------~~~~~~----- 70 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DI-----NCNSKNLFHVKEFPLE-------FENKLD----- 70 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CC-----SSBGGGTEEEEEECCC-------CCCTTT-----
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---ee-----cCCCccEEEEEECCCC-------CcceEE-----
Confidence 4458899999999999999999999999 643332 22 4788999999999998 122221
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCC----
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSD---- 608 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~---- 608 (927)
++...+..+..+ .|...|++++|+|+ .+|++++.||+|+|||... ++..+.|..
T Consensus 71 ------------------~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~ 129 (588)
T 2j04_A 71 ------------------FELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSS 129 (588)
T ss_dssp ------------------TSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTT
T ss_pred ------------------EEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCcccc
Confidence 111111121122 45788999999999 6799999999999999654 666666554
Q ss_pred -ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-------EEe-----ccCCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 609 -YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-------VDW-----NDLHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 609 -~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-------v~~-----~~~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
.|.+++|+| ++++|++|+.||+|+|||+.++.+ +.. ..|...|.+++|+|+| +++++.|+.|++
T Consensus 130 ~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFS 206 (588)
T ss_dssp TCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEE
T ss_pred ccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEE
Confidence 499999999 999999999999999999998853 333 4456799999999999 889999999999
Q ss_pred EECCCCeee---eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEeecCCcceEEEEE
Q 002407 676 YNTSENKLQ---QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGFRNTNSQISASL 751 (927)
Q Consensus 676 wDl~~~~~~---~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~~~~~~v~sv~f 751 (927)
||+.++... ..+. ..|...|.+++|+ +. .|++++ +++|++||...... .+. ..+...+..+.|
T Consensus 207 Wd~~~~~~~~~~~tL~--------~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~ 273 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQ--------NASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPL 273 (588)
T ss_dssp ECCCSSSSCCCEEEEE--------CCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEE
T ss_pred EECCCCccccceeeec--------ccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEe
Confidence 999887742 1110 2677899999999 33 777776 69999999776555 444 257888999999
Q ss_pred --ecCCCEEEEEECCCcEEEEECC
Q 002407 752 --TANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 752 --spdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+|++..|+++++||. ++|.++
T Consensus 274 ~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 274 NHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTCSSCEEEEECSSCEE-EEEESS
T ss_pred eeCCCCCEEEEEcCCCC-EEEeec
Confidence 999999999999999 999987
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=1.2e-27 Score=261.45 Aligned_cols=207 Identities=17% Similarity=0.224 Sum_probs=169.4
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC--cEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEEEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK--TCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVRIW 635 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~--~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IW 635 (927)
..+.+|.+.|++++|+|+ .+|++++.|++|+|||+... +++.++. |...|++++|+|. ++++|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999998 78999999999999999743 5666665 9999999999862 48899999999999999
Q ss_pred eCCCCc---EEEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 636 SIPERQ---VVDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 636 Dl~t~~---~v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
|+.+++ +.....|...|.+++|+|+ +.+|++++.|+.|++||++++...... ....|...|++++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~-------~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI-------IIDAHAIGVNSASWAP 155 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE-------EEECCSSCEEEEEECC
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee-------eeecccCccceEeecC
Confidence 998863 2334557789999999997 899999999999999999876322111 1247889999999999
Q ss_pred CC------------CcEEEEEECCCcEEEEECCcce----EEEEeecCCcceEEEEEecCC---CEEEEEECCCcEEEEE
Q 002407 711 GS------------SSEVLVTSADSRIRVVDGIDLV----HKFKGFRNTNSQISASLTANG---RYVVSASEDSYVYVWK 771 (927)
Q Consensus 711 dg------------~~~Llsgs~Dg~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg---~~Lasgs~Dg~I~IWd 771 (927)
+. ..+|++++.|++|+|||..... .......|...|.+++|+|++ .+|++++.|++|+||+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 73 2489999999999999954311 222233467789999999985 8999999999999999
Q ss_pred CCC
Q 002407 772 YEA 774 (927)
Q Consensus 772 l~s 774 (927)
+++
T Consensus 236 ~~~ 238 (297)
T 2pm7_B 236 QDN 238 (297)
T ss_dssp ESS
T ss_pred eCC
Confidence 875
No 95
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=9.5e-28 Score=265.96 Aligned_cols=298 Identities=14% Similarity=0.184 Sum_probs=232.5
Q ss_pred eeeeEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCc-CcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 447 YKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 447 ~~~q~L~gH~~~I~~vafSpd---G~~LaSgs~DgtVrVWdv~~-~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
...+.+.+|.+.|++|+|+|+ |++||+|+.||.|+||++.+ +...... ..+|...+..+.|+|++.+++++.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA----QQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE----EEECSSCEEEEEECTTSSEEEEEE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE----eccccCCEEEEEECcCCCEEEEEc
Confidence 344567899999999999999 69999999999999999987 4333222 245778899999999999999998
Q ss_pred cCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe--cCC-cEEEEEeCCCcEEEEeCCCCc
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW--SKS-QHLLSSSMDKTVRLWHLSSKT 599 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~--spd-~~L~Sgs~DgtV~lWDl~t~~ 599 (927)
.++.+ .+|++.......+.+|...|++++| +++ .+|++++.|++|++||+.+++
T Consensus 106 ~dg~v-----------------------~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 106 CDKTA-----------------------KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp TTSEE-----------------------EEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred CCCcE-----------------------EEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence 88877 5666666666667889999999999 777 579999999999999999999
Q ss_pred EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe---ccCCCcEEEEEECCCCCE----EEEEECCCe
Q 002407 600 CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW---NDLHEMVTAACYTPDGQG----ALVGSYKGS 672 (927)
Q Consensus 600 ~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~---~~~~~~V~sla~spdg~~----l~tgs~Dg~ 672 (927)
++..+.....+.++.+.+ ..+++++.++.+++|++........ ......+.++++.++... +++++.||.
T Consensus 163 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 239 (368)
T 3mmy_A 163 PMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR 239 (368)
T ss_dssp CSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE
T ss_pred EEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc
Confidence 999998777888888865 4788899999999999987654321 122345667776665544 999999999
Q ss_pred EEEEECCCCee---eeecccccc---cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcce
Q 002407 673 CHLYNTSENKL---QQKSPINLQ---NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746 (927)
Q Consensus 673 I~IwDl~~~~~---~~~~~i~~~---~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v 746 (927)
|++||+..... ...+..... ......|...|++++|+|++. +|++++.|+.|++||............+...+
T Consensus 240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 318 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG-TLATVGSDGRFSFWDKDARTKLKTSEQLDQPI 318 (368)
T ss_dssp EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC-CEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCC-EEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence 99999988632 222110000 000012223799999999886 79999999999999987665555555667889
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 747 ISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.+++|+|+|++|++++.|+..+.|++-..
T Consensus 319 ~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 319 SACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred eEEEECCCCCeEEEEecccccccccccCC
Confidence 99999999999999999987666665543
No 96
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=2.2e-27 Score=273.29 Aligned_cols=269 Identities=17% Similarity=0.370 Sum_probs=216.9
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
+.+.......+++|..++.|++|+..+.+. .+.+.+|.+.|++++| ++++|++|+.||+|+|||+.+++.
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~--- 205 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLEC-----KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--- 205 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCE-----EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeE-----EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE---
Confidence 445555667889999999999999876543 3567899999999999 788999999999999999876532
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+..+.+|...|.++
T Consensus 206 ------------------------------------------------------------------~~~~~~h~~~v~~l 219 (435)
T 1p22_A 206 ------------------------------------------------------------------LNTLIHHCEAVLHL 219 (435)
T ss_dssp ------------------------------------------------------------------EEEECCCCSCEEEE
T ss_pred ------------------------------------------------------------------EEEEcCCCCcEEEE
Confidence 33456799999999
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEE---EEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cC
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCL---KIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DL 648 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~---~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~ 648 (927)
+|++ +.|++++.|++|++||+.++..+ ..+ .|...|.+++| ++++|++|+.|+.|++||+.+++.+..+ .+
T Consensus 220 ~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 295 (435)
T 1p22_A 220 RFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295 (435)
T ss_dssp ECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC
Confidence 9975 68999999999999999987755 333 39999999999 5689999999999999999999887644 46
Q ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 649 HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
...|.+++| ++.++++|+.||.|++||+.+++....+ ..|...|++++|. +. +|++++.||.|++|
T Consensus 296 ~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~~~~~--~~-~l~sg~~dg~i~vw 361 (435)
T 1p22_A 296 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---------EGHEELVRCIRFD--NK-RIVSGAYDGKIKVW 361 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE---------CCCSSCEEEEECC--SS-EEEEEETTSCEEEE
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE---------eCCcCcEEEEEec--CC-EEEEEeCCCcEEEE
Confidence 678999998 4789999999999999999998877664 3788999999993 33 89999999999999
Q ss_pred ECCcce---------EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 729 DGIDLV---------HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 729 D~~~~~---------~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
|..... .......+...|.+++| ++.+|++++.||.|+|||+.+....
T Consensus 362 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp EHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred ECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 943221 23333445677888988 7889999999999999999886543
No 97
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-28 Score=299.78 Aligned_cols=255 Identities=20% Similarity=0.278 Sum_probs=207.2
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
+.+.+|.+.|++|+|+|+|++||+|+.||+|+||++..+.
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~---------------------------------------- 42 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------------------------------- 42 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE----------------------------------------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC----------------------------------------
Confidence 4578999999999999999999999999999999975321
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEEEeCCCcEEEEeCCCCc--EEEEE
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKT--CLKIF 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~--~~~~~ 604 (927)
.+.+..+.+|.+.|++++|+++ .+|++++.||+|++||+.+++ .+..+
T Consensus 43 ---------------------------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 43 ---------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp ---------------------------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred ---------------------------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc
Confidence 0234467789999999999875 679999999999999999986 44444
Q ss_pred e-cCCceEEEEEccCC--CCEEEEEECCCcEEEEeCCCC---cEEEeccCCCcEEEEEECC-------------CCCEEE
Q 002407 605 S-HSDYVTCIQFNPVD--DRYFISGSLDAKVRIWSIPER---QVVDWNDLHEMVTAACYTP-------------DGQGAL 665 (927)
Q Consensus 605 ~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~IWDl~t~---~~v~~~~~~~~V~sla~sp-------------dg~~l~ 665 (927)
. |...|++++|+| + +++|++|+.||.|++||+.++ .......+...|.+++|+| ++.+|+
T Consensus 96 ~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~ 174 (753)
T 3jro_A 96 AVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174 (753)
T ss_dssp CCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE
T ss_pred cCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE
Confidence 4 999999999999 7 899999999999999999887 3345567788999999999 589999
Q ss_pred EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcce-----EEEE
Q 002407 666 VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDLV-----HKFK 738 (927)
Q Consensus 666 tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~~-----~~~~ 738 (927)
+|+.||.|++||++++....... .....|...|++++|+|++ ..+|++++.|+.|++||..... ....
T Consensus 175 sgs~dg~I~iwd~~~~~~~~~~~-----~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 249 (753)
T 3jro_A 175 TGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249 (753)
T ss_dssp EEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS
T ss_pred EEECCCeEEEEeccCCcccceee-----eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec
Confidence 99999999999998764322111 1124789999999999983 4489999999999999965421 2222
Q ss_pred eecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
...+...+.+++|+|+|++|++++.||.|+||++.....
T Consensus 250 ~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 334567789999999999999999999999999986543
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.8e-27 Score=271.21 Aligned_cols=325 Identities=14% Similarity=0.252 Sum_probs=219.8
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccc------cceeeeeEeecCC------------CCEEEEEEcCCC--CEEEE
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDL------TALYKCQEIQAHN------------GSIWSIKFSLDG--RYLAS 473 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l------~~l~~~q~L~gH~------------~~I~~vafSpdG--~~LaS 473 (927)
..+-.....++++|..++.|++|+....+. ........+.+|. +.|++|+|+|++ .+|++
T Consensus 33 ~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s 112 (447)
T 3dw8_B 33 TVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLL 112 (447)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEE
Confidence 333344456788999999999999876542 1223456788998 899999999998 89999
Q ss_pred EeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEe
Q 002407 474 AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVF 553 (927)
Q Consensus 474 gs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~ 553 (927)
++.|++|+||++.++......... ..+ ++...... .. ..+...... + .-+
T Consensus 113 ~s~d~~i~iw~~~~~~~~~~~~~~--~~~-----------~g~~~~~~-~~--------------~~~~~~~~~-~-~~~ 162 (447)
T 3dw8_B 113 STNDKTIKLWKISERDKRPEGYNL--KEE-----------DGRYRDPT-TV--------------TTLRVPVFR-P-MDL 162 (447)
T ss_dssp EECSSCEEEEEEEEEEEEEECCSC--C-------------------CC-CC--------------CSCCCCEEE-E-EEE
T ss_pred eCCCCeEEEEecccccCCcceecc--cCc-----------cccccCcc-cc--------------cceEecccc-c-hhe
Confidence 999999999999775533221100 000 00000000 00 000000000 0 001
Q ss_pred ecCCCceEEE-ccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC-CCcEEEEE--------ecCCceEEEEEccCCC-C
Q 002407 554 ALSDKPICSF-QGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIF--------SHSDYVTCIQFNPVDD-R 621 (927)
Q Consensus 554 ~~s~k~i~~l-~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~-t~~~~~~~--------~h~~~V~~v~fsp~dg-~ 621 (927)
.....+...+ .+|...|++++|+|+ .+|+++ .|++|++||+. .++.+..+ .|...|++++|+| ++ +
T Consensus 163 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~ 240 (447)
T 3dw8_B 163 MVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCN 240 (447)
T ss_dssp EEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTT
T ss_pred eeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCc
Confidence 1122333444 689999999999999 677777 89999999999 45555543 3889999999999 76 9
Q ss_pred EEEEEECCCcEEEEeCCCCcE----EE-eccCCC------------cEEEEEECCCCCEEEEEECCCeEEEEECCC-Cee
Q 002407 622 YFISGSLDAKVRIWSIPERQV----VD-WNDLHE------------MVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKL 683 (927)
Q Consensus 622 ~L~sgs~Dg~I~IWDl~t~~~----v~-~~~~~~------------~V~sla~spdg~~l~tgs~Dg~I~IwDl~~-~~~ 683 (927)
+|++++.|+.|++||+++++. +. +..+.. .|.+++|+|++++|++++. +.|++||++. ++.
T Consensus 241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~ 319 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRP 319 (447)
T ss_dssp EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSC
T ss_pred EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccc
Confidence 999999999999999998875 34 334433 8999999999999999999 9999999987 665
Q ss_pred eeeccccccccc------ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEee----------------
Q 002407 684 QQKSPINLQNKK------KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGF---------------- 740 (927)
Q Consensus 684 ~~~~~i~~~~~~------~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~---------------- 740 (927)
...+........ .......+..++|+|++. +|++++.|+.|+|||...... .+..+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (447)
T 3dw8_B 320 VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVC 398 (447)
T ss_dssp SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEE
T ss_pred cceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCcccc
Confidence 544321100000 000001134589999987 789999999999999654322 22221
Q ss_pred ---------------cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 741 ---------------RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 741 ---------------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.....+..++|+|++++||+++.++ +++|.-+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2234678899999999999998776 8888753
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=4.5e-27 Score=260.11 Aligned_cols=284 Identities=15% Similarity=0.191 Sum_probs=219.2
Q ss_pred cCCCCeEEEccC---ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCcCc-c
Q 002407 418 DDSQDVSFHGQE---RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD---GRYLASAGEDCVIHVWQVVESE-R 490 (927)
Q Consensus 418 ~d~~~~~~~g~~---~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd---G~~LaSgs~DgtVrVWdv~~~~-~ 490 (927)
.++..++++|.. ++.|++|+...++..... ..+|...|.+++|+|+ |++|++|+.||.|++||+.+++ .
T Consensus 28 p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 103 (357)
T 3i2n_A 28 PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR----EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP 103 (357)
T ss_dssp TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE----EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCccCCCcEEEEEeCCCCccccee----eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCcc
Confidence 344456667766 899999998877654332 2479999999999998 7999999999999999999887 4
Q ss_pred cceeecccccCccccEEEE------ccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC--CceEE
Q 002407 491 KGELLEKQEDGHLNMLLLA------NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD--KPICS 562 (927)
Q Consensus 491 ~~~l~~~~~~~~~~~v~~v------~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~--k~i~~ 562 (927)
...+ .++...+..+ ++++++..++++..++.+. +|++.. .++..
T Consensus 104 ~~~~-----~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~-----------------------vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 104 VYSV-----KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK-----------------------VWDPRQKDDPVAN 155 (357)
T ss_dssp SEEE-----CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE-----------------------EECTTSCSSCSEE
T ss_pred EEEE-----EecccceEEEeeccccccCCCccEEEEEeCCCeEE-----------------------EEeCCCCCCccee
Confidence 4443 3566677777 6789999999998888774 344332 25666
Q ss_pred EccCCC----CEEEEE----ecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccC--CCCEEEEEECCCc
Q 002407 563 FQGHLD----DVLDLS----WSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV--DDRYFISGSLDAK 631 (927)
Q Consensus 563 l~gH~~----~V~~l~----~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~--dg~~L~sgs~Dg~ 631 (927)
+..|.+ .|.+++ |+++ .+|++++.|+.|++||+.+++......|...|.+++|+|. ++.+|++++.|+.
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 235 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK 235 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence 666555 899998 6777 7899999999999999999999888889999999999985 6789999999999
Q ss_pred EEEEeCCCCcEE------EeccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeecccc----------cccc
Q 002407 632 VRIWSIPERQVV------DWNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPIN----------LQNK 694 (927)
Q Consensus 632 I~IWDl~t~~~v------~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~----------~~~~ 694 (927)
|++||+++++.+ ....+...|++++|+|++. +|++++.||.|++||+..+......... ....
T Consensus 236 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 236 FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 999999875432 2236788999999999998 8999999999999999865432110000 0011
Q ss_pred cccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc
Q 002407 695 KKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 695 ~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
....|...|++++|+|++..++++++.|+.|+|||..++
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 124788999999999999854458999999999996543
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=6e-27 Score=256.12 Aligned_cols=217 Identities=17% Similarity=0.219 Sum_probs=175.6
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCC----cEEEEEe-cCCceEEEEEccC-CCCEEEEEECCCcEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPV-DDRYFISGSLDAKVR 633 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~----~~~~~~~-h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~ 633 (927)
..+.+|.+.|++++|+|+ .+|++++.|++|++||+.++ +.+..+. |...|++++|+|. ++++|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356799999999999999 78999999999999999876 3555554 9999999999984 489999999999999
Q ss_pred EEeCCCC---------c-EEEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccc----ccccc
Q 002407 634 IWSIPER---------Q-VVDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQ----NKKKR 697 (927)
Q Consensus 634 IWDl~t~---------~-~v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~----~~~~~ 697 (927)
+||+.++ + ......+...|.+++|+|+ +.+|++++.||.|++||+.+++....+..... .....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999886 2 3345567789999999999 99999999999999999998775544322111 11123
Q ss_pred CCCCCeEEEEEcCC--CCcEEEEEECCCcEEEEECCcce--EEEEeecCCcceEEEEEecCC----CEEEEEECCCcEEE
Q 002407 698 SHQRKITGFQFAPG--SSSEVLVTSADSRIRVVDGIDLV--HKFKGFRNTNSQISASLTANG----RYVVSASEDSYVYV 769 (927)
Q Consensus 698 ~h~~~Vtsl~fspd--g~~~Llsgs~Dg~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg----~~Lasgs~Dg~I~I 769 (927)
.+...+.+++|+|+ ...++++++.++.+.+|+..... .......+...|.+++|+|++ ++|++++.||.|+|
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 67788999999997 34489999999999888754332 233444567889999999998 89999999999999
Q ss_pred EECCCCCC
Q 002407 770 WKYEAESR 777 (927)
Q Consensus 770 Wdl~s~~~ 777 (927)
||+.....
T Consensus 245 wd~~~~~~ 252 (351)
T 3f3f_A 245 FKITEKLS 252 (351)
T ss_dssp EEEEECC-
T ss_pred EeCCCCcC
Confidence 99987543
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6.3e-27 Score=269.65 Aligned_cols=257 Identities=21% Similarity=0.299 Sum_probs=209.0
Q ss_pred eEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLD-GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpd-G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..+.+|.+.|++|+|+|+ +.+||+++.||.|+||++.+...... +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------------~--------------- 167 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------------P--------------- 167 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------------T---------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------------c---------------
Confidence 445689999999999997 78999999999999999865321100 0
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcE------
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTC------ 600 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~------ 600 (927)
....+++..+.+|...|++|+|+|+ . +|++++.||+|++|++..+..
T Consensus 168 -------------------------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 222 (430)
T 2xyi_A 168 -------------------------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID 222 (430)
T ss_dssp -------------------------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE
T ss_pred -------------------------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec
Confidence 0012455677899999999999998 4 899999999999999987321
Q ss_pred -EEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC---cE-EEeccCCCcEEEEEECCCCC-EEEEEECCCeE
Q 002407 601 -LKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER---QV-VDWNDLHEMVTAACYTPDGQ-GALVGSYKGSC 673 (927)
Q Consensus 601 -~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~---~~-v~~~~~~~~V~sla~spdg~-~l~tgs~Dg~I 673 (927)
...+ .|...|.+++|+|.++.+|++++.|+.|++||++++ +. .....+...|++++|+|++. +|++|+.||.|
T Consensus 223 ~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v 302 (430)
T 2xyi_A 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV 302 (430)
T ss_dssp CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeE
Confidence 2334 489999999999977889999999999999999976 33 33456778999999999987 68899999999
Q ss_pred EEEECCCC-eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--------------ceEEEE
Q 002407 674 HLYNTSEN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--------------LVHKFK 738 (927)
Q Consensus 674 ~IwDl~~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--------------~~~~~~ 738 (927)
++||++.. ..+..+ ..|...|++++|+|++..+|++++.|+.|+|||... ....+.
T Consensus 303 ~vwd~~~~~~~~~~~---------~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 303 ALWDLRNLKLKLHSF---------ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EEEETTCTTSCSEEE---------ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EEEeCCCCCCCeEEe---------ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 99999874 333332 368899999999999987899999999999999654 233344
Q ss_pred eecCCcceEEEEEecCCC-EEEEEECCCcEEEEECCC
Q 002407 739 GFRNTNSQISASLTANGR-YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~-~Lasgs~Dg~I~IWdl~s 774 (927)
...+...|.+++|+|+++ +|++++.||.|+||++..
T Consensus 374 ~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 445677899999999999 999999999999999975
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=1.8e-26 Score=254.41 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=220.5
Q ss_pred EccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc----EEEEEecCCceEEEEEccCCCC-EEEEEECCCcEEEEe
Q 002407 563 FQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT----CLKIFSHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWS 636 (927)
Q Consensus 563 l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~----~~~~~~h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWD 636 (927)
..+|.+.|++++|+|+ .+|++++.|+.|+||++.++. ......|...|++++|+| +++ +|++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEE
Confidence 4579999999999998 789999999999999999887 556667999999999999 899 999999999999999
Q ss_pred C-CCCcEEEecc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCC---------CeeeeecccccccccccCCCCCeE
Q 002407 637 I-PERQVVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE---------NKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 637 l-~t~~~v~~~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---------~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
+ .+++...+.. +...|.+++|+| +.+|++++.|+.|++||+.+ ++.... ..+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~v~ 154 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN----------TKVKNKIF 154 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS----------SSSCCCEE
T ss_pred eccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE----------EeeCCceE
Confidence 9 9988877777 889999999999 99999999999999999876 433322 24778999
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEEEeecCCcceEEEEEec-CCCEEEEEECCCcEEEEECCCCC--Cc
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKFKGFRNTNSQISASLTA-NGRYVVSASEDSYVYVWKYEAES--RP 778 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~~~~~~~~~v~sv~fsp-dg~~Lasgs~Dg~I~IWdl~s~~--~~ 778 (927)
+++|+|++ +++++.|+.|++||... .........+...+.+++|+| ++++|++++.||.|+||+++... ..
T Consensus 155 ~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 155 TMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 99999874 89999999999999765 222333344567899999999 99999999999999999998751 10
Q ss_pred ccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEe
Q 002407 779 SRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSA 858 (927)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasa 858 (927)
... . ..+.. +.... ....+ ......++|+|++.+|+++
T Consensus 232 ~~~--~---~~~~~-~~~~~------------------------~~~~~------------~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 232 SSK--R---FAFRC-HRLNL------------------------KDTNL------------AYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp CTT--C---EEEEC-CCCCT------------------------TCCSS------------CCCEEEEEECTTTCCEEEE
T ss_pred ccc--c---eeeec-ccccc------------------------ccccc------------ceeEEEEEEcCCCCEEEEe
Confidence 000 0 00000 00000 00001 1223446799999999998
Q ss_pred ccccccCccccccCchhhcc---cccc-CCCceecccCCCCCcccCCCCCEEEEEcCCCc-EEEee
Q 002407 859 TNSYFFDRISATWPEEKLVL---TARN-RSPRTSLDISNGISSSISAWGMVIVTAGLRGE-IRAYQ 919 (927)
Q Consensus 859 s~~~~~d~~v~~W~~e~l~~---~~~~-~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~-IrvW~ 919 (927)
+ .|+.+.+|+...... ...| ..++.. ++ |+|++|++|+.||+ .+.|.
T Consensus 270 ~----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~--------~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 270 G----SDGIISCWNLQTRKKIKNFAKFNEDSVVK--------IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp E----TTSCEEEEETTTTEEEEECCCCSSSEEEE--------EE--ECSSEEEEEEECTHHHHCSS
T ss_pred c----CCceEEEEcCccHhHhhhhhcccCCCceE--------ec--CCCCeEEEEecCCccccccc
Confidence 7 788999999874322 2233 444443 34 89999999999999 55555
No 103
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-26 Score=245.09 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=217.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++++..++.|++|+....+. .+.+..|.+.|.+++|+|++++|++++.|+.|++|++........+. ....
T Consensus 30 ~~l~s~~~dg~v~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~ 102 (313)
T 3odt_A 30 SKVASVSRDGTVRLWSKDDQWL-----GTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLY--TLIG 102 (313)
T ss_dssp TEEEEEETTSEEEEEEESSSEE-----EEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-C--EECC
T ss_pred CEEEEEEcCCcEEEEECCCCEE-----EEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCccc--chhh
Confidence 4578889999999999765543 35567899999999999999999999999999999998754322211 1245
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-c
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-Q 579 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~ 579 (927)
+...+..+.+ ++..++++..++.+ .+|+ ..+.+..+..|...|.++.|++ + .
T Consensus 103 ~~~~i~~~~~--~~~~l~~~~~d~~i-----------------------~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 103 HQGNVCSLSF--QDGVVISGSWDKTA-----------------------KVWK-EGSLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEE-----------------------EEEE-TTEEEEEEECCSSCEEEEEEEETTTT
T ss_pred cccCEEEEEe--cCCEEEEEeCCCCE-----------------------EEEc-CCcEEEecccCCCceeEEEEccCCCC
Confidence 6677888888 56678888777776 3444 5567788899999999999988 5 8
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAAC 656 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla 656 (927)
.|++++.|+.|++|| ..+.+..+. |...|.+++|+| ++. |++++.|+.|++||+++++.+..+ .+...|++++
T Consensus 157 ~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~ 232 (313)
T 3odt_A 157 KFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK 232 (313)
T ss_dssp EEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE
Confidence 899999999999999 445555555 899999999999 777 999999999999999998877644 4778999999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
|+|++ .|++++.||.|++||+.+++....+. .|...|++++|+|++. +++++.|+.|++||...
T Consensus 233 ~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~---------~~~~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 233 LLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT---------LPAISIWSVDCMSNGD--IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTS-CEEEEETTSEEEEECTTTCCEEEEEE---------CSSSCEEEEEECTTSC--EEEEETTSCEEEEESCG
T ss_pred EecCC-CEEEEecCCEEEEEECCCCceeEEEe---------ccCceEEEEEEccCCC--EEEEeCCCcEEEEeCCC
Confidence 99999 58999999999999999998776653 6778999999999986 77899999999999654
No 104
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=4.9e-27 Score=259.12 Aligned_cols=208 Identities=17% Similarity=0.228 Sum_probs=164.6
Q ss_pred EEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc--EEEEEe-cCCceEEEEEcc-CCCCEEEEEECCCcEEEEe
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT--CLKIFS-HSDYVTCIQFNP-VDDRYFISGSLDAKVRIWS 636 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~--~~~~~~-h~~~V~~v~fsp-~dg~~L~sgs~Dg~I~IWD 636 (927)
.+.+|.+.|++++|+|+ .+|++++.|++|+|||+.++. ++..+. |...|++++|+| .++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 45689999999999998 789999999999999998875 345555 999999999975 2488999999999999999
Q ss_pred CCCCc--EE-EeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC
Q 002407 637 IPERQ--VV-DWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 637 l~t~~--~v-~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
+.+++ .+ ....|...|.+++|+|+ +.+|++|+.|+.|++||+......... .....|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~------~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK------KINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC------CBTTSSSSCBCCCEECCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee------eeeccccCCcceEEEccc
Confidence 98863 33 34567789999999998 889999999999999999875322111 112478889999999997
Q ss_pred C----------------CcEEEEEECCCcEEEEECCcc---eEEEEeecCCcceEEEEEecCC----CEEEEEECCCcEE
Q 002407 712 S----------------SSEVLVTSADSRIRVVDGIDL---VHKFKGFRNTNSQISASLTANG----RYVVSASEDSYVY 768 (927)
Q Consensus 712 g----------------~~~Llsgs~Dg~I~VwD~~~~---~~~~~~~~~~~~v~sv~fspdg----~~Lasgs~Dg~I~ 768 (927)
. ..+|++++.|+.|+|||.... ........|...|.+++|+|++ .+|++++.|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 3 137999999999999996432 2233334467789999999987 8999999999999
Q ss_pred EEECCCC
Q 002407 769 VWKYEAE 775 (927)
Q Consensus 769 IWdl~s~ 775 (927)
||++.+.
T Consensus 242 iw~~~~~ 248 (316)
T 3bg1_A 242 IWTCDDA 248 (316)
T ss_dssp EEECSST
T ss_pred EEEccCc
Confidence 9998763
No 105
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=5.2e-25 Score=248.25 Aligned_cols=267 Identities=13% Similarity=0.130 Sum_probs=213.2
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+++++..++.|++|+..++++. +.+.+|. .+.+++|+|+|++| ++++.|+.|++||+.+++....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-------- 69 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVT-----ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------- 69 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEE-----EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------
T ss_pred EEEEcCCCCEEEEEECCCCeEE-----EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--------
Confidence 4677888999999998766543 4456665 48999999999987 6777999999999876643222
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
+..| ..+.+++|+|+ .+
T Consensus 70 -------------------------------------------------------------~~~~-~~v~~~~~spdg~~ 87 (391)
T 1l0q_A 70 -------------------------------------------------------------VPAG-SSPQGVAVSPDGKQ 87 (391)
T ss_dssp -------------------------------------------------------------EECS-SSEEEEEECTTSSE
T ss_pred -------------------------------------------------------------EECC-CCccceEECCCCCE
Confidence 1222 37899999998 55
Q ss_pred EE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCcEEEEeCCCCcEEEeccCCCcEEEEEEC
Q 002407 581 LL-SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYT 658 (927)
Q Consensus 581 L~-Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~s 658 (927)
|+ +++.++.|++||+.+++.+..+.+...+.+++|+| ++++| ++++.++.|++||+.+++.+.....+..+..++|+
T Consensus 88 l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~ 166 (391)
T 1l0q_A 88 VYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT 166 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEEC
Confidence 64 55567999999999999999988888899999999 88876 68888999999999999988888778889999999
Q ss_pred CCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEECCcce
Q 002407 659 PDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS---ADSRIRVVDGIDLV 734 (927)
Q Consensus 659 pdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs---~Dg~I~VwD~~~~~ 734 (927)
|++++| ++++.++.|++||+.+++..... .+...+.+++|+|++. +|++++ .++.|++||.....
T Consensus 167 ~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~g~-~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 167 PDGTKVYVANFDSMSISVIDTVTNSVIDTV----------KVEAAPSGIAVNPEGT-KAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSEEEEEEECTTSS-EEEEEEECSSCCEEEEEETTTTE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEE----------ecCCCccceEECCCCC-EEEEEecCcCCCcEEEEECCCCe
Confidence 999987 56678899999999998876553 3456789999999987 566655 78999999976543
Q ss_pred EEEEeecCCcceEEEEEecCCCEE-EEEECCCcEEEEECCCCCCc
Q 002407 735 HKFKGFRNTNSQISASLTANGRYV-VSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~s~~~~ 778 (927)
...... ....+.+++|+|++++| ++++.|+.|++||+.+++..
T Consensus 236 ~~~~~~-~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 236 ITARIP-VGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp EEEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEEEe-cCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 332222 23457889999999987 56688999999999986543
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-26 Score=254.42 Aligned_cols=211 Identities=18% Similarity=0.248 Sum_probs=174.3
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC--CCcEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCc
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAK 631 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~--t~~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~ 631 (927)
+.+..+.+|.+.|++++|+|+ .+|++++.|+.|+|||+. +++.+..+. |...|++++|+| + +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence 345678899999999999999 789999999999999998 555666665 999999999987 5 899999999999
Q ss_pred EEEEeCCCCc--EE-EeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 632 VRIWSIPERQ--VV-DWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 632 I~IWDl~t~~--~v-~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
|++||+.+++ .+ ....+...|.+++|+|+ +.+|++++.|+.|++||+..........+ ..|...|+++
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~~~~v~~~ 153 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-------DAHAIGVNSA 153 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-------ECCTTCEEEE
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-------cCCCCceEEE
Confidence 9999999985 33 34557789999999999 99999999999999999998754333221 4788999999
Q ss_pred EEcCC------------CCcEEEEEECCCcEEEEECCcc----eEEEEeecCCcceEEEEEecC---CCEEEEEECCCcE
Q 002407 707 QFAPG------------SSSEVLVTSADSRIRVVDGIDL----VHKFKGFRNTNSQISASLTAN---GRYVVSASEDSYV 767 (927)
Q Consensus 707 ~fspd------------g~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~~~~~v~sv~fspd---g~~Lasgs~Dg~I 767 (927)
+|+|. ...+|++++.|+.|++||.... ........+...|.+++|+|+ +++|++++.||.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i 233 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEE
Confidence 99994 2348999999999999995321 122233346778999999999 8999999999999
Q ss_pred EEEECCCCC
Q 002407 768 YVWKYEAES 776 (927)
Q Consensus 768 ~IWdl~s~~ 776 (927)
+|||+.++.
T Consensus 234 ~iwd~~~~~ 242 (379)
T 3jrp_A 234 IIWTQDNEQ 242 (379)
T ss_dssp EEEEESSTT
T ss_pred EEEeCCCCC
Confidence 999998754
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=2.6e-25 Score=256.02 Aligned_cols=280 Identities=19% Similarity=0.267 Sum_probs=215.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|...|+|++| ++++|++|+.||+|+|||+.+++
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~------------------------------------------- 164 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE------------------------------------------- 164 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-------------------------------------------
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-------------------------------------------
Confidence 467788999888 78999999999999999986543
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceE
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVT 611 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~ 611 (927)
.+..+.+|...|++++| ....|++|+.||+|++||+.+++++..+. |...|.
T Consensus 165 --------------------------~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~ 217 (435)
T 1p22_A 165 --------------------------CKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217 (435)
T ss_dssp --------------------------EEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE
T ss_pred --------------------------EEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE
Confidence 23345689999999999 34789999999999999999999998887 999999
Q ss_pred EEEEccCCCCEEEEEECCCcEEEEeCCCCcEE----EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeec
Q 002407 612 CIQFNPVDDRYFISGSLDAKVRIWSIPERQVV----DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v----~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~ 687 (927)
+++|++ .+|++|+.|+.|++||+.++..+ ....+...|.+++| ++++|++|+.||.|++||+.+++....+
T Consensus 218 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 292 (435)
T 1p22_A 218 HLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL 292 (435)
T ss_dssp EEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence 999964 59999999999999999887643 35567789999999 7889999999999999999998877664
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
..|...|.++.|.+ .++++++.|+.|++||............+...+.+++| ++.+|++|+.||.|
T Consensus 293 ---------~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i 358 (435)
T 1p22_A 293 ---------NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKI 358 (435)
T ss_dssp ---------ECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCE
T ss_pred ---------cCCCCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcE
Confidence 37888999999953 38999999999999997655444444456778888888 78999999999999
Q ss_pred EEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccC
Q 002407 768 YVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTAN 825 (927)
Q Consensus 768 ~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~ 825 (927)
+|||+.+...+............. .|...+ ..+.|++...+....++.+..|+...
T Consensus 359 ~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v-~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 359 KVWDLVAALDPRAPAGTLCLRTLV-EHSGRV-FRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEHHHHTSTTSCTTTTEEEEEC-CCSSCC-CCEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEECCCCCCccccccchheeecc-CCCCCe-EEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 999997755332211111111111 111111 23334555555555666666666544
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=7.8e-26 Score=250.52 Aligned_cols=300 Identities=13% Similarity=0.201 Sum_probs=225.8
Q ss_pred CceEEEccCCCCEEEEEecCC----cEEEEEeCCCcEEEEeCCC-CcEE-EEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 558 KPICSFQGHLDDVLDLSWSKS----QHLLSSSMDKTVRLWHLSS-KTCL-KIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd----~~L~Sgs~DgtV~lWDl~t-~~~~-~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
+.+..+.+|.+.|++++|+|+ .+|++++.|+.|+|||+.+ +..+ ..+. |...|++++|+| ++++|++++.|+
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg 108 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDK 108 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTS
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCC
Confidence 566778899999999999998 5799999999999999997 5554 4444 999999999999 999999999999
Q ss_pred cEEEEeCCCCcEEEeccCCCcEEEEEE--CCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 631 KVRIWSIPERQVVDWNDLHEMVTAACY--TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~~V~sla~--spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
.|++||+.+++.+....+...|.+++| +|++.+|++++.||.|++||+++++....+. ....+.++.+
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~~~~ 178 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ----------LPERCYCADV 178 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE----------CSSCEEEEEE
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe----------cCCCceEEEe
Confidence 999999999999998889999999999 9999999999999999999999887766543 2346777777
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcceEEEEee--cCCcceEEEEEecCCCE----EEEEECCCcEEEEECCCCCCccccc
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDLVHKFKGF--RNTNSQISASLTANGRY----VVSASEDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~--~~~~~v~sv~fspdg~~----Lasgs~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.+. .+++++.++.+++|+.......+... ........+++.++... +++++.||.|+||++.........
T Consensus 179 ~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~- 254 (368)
T 3mmy_A 179 IYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN- 254 (368)
T ss_dssp ETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS-
T ss_pred cCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc-
Confidence 753 78999999999999976544433332 22344566666665554 999999999999999875321111
Q ss_pred ccceeeeeeeecCCCeEEEEecCCceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEecccc
Q 002407 783 SITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSY 862 (927)
Q Consensus 783 ~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~ 862 (927)
..+......... .....+ ......++|+|++.+|++++
T Consensus 255 -----~~~~~~~~~~~~----------------------~~~~~~------------~~~v~~~~~sp~~~~l~s~~--- 292 (368)
T 3mmy_A 255 -----FTFKCHRSNGTN----------------------TSAPQD------------IYAVNGIAFHPVHGTLATVG--- 292 (368)
T ss_dssp -----EEEECSEEC--------------------------CCCEE------------ECCEEEEEECTTTCCEEEEE---
T ss_pred -----eeeeeeeccccc----------------------cccccc------------ccceEEEEEecCCCEEEEEc---
Confidence 000000000000 000000 02234467999999999987
Q ss_pred ccCccccccCchhhcc---ccccCCCceecccCCCCCcccCCCCCEEEEEcCCCcEEEeecCCC
Q 002407 863 FFDRISATWPEEKLVL---TARNRSPRTSLDISNGISSSISAWGMVIVTAGLRGEIRAYQNFGL 923 (927)
Q Consensus 863 ~~d~~v~~W~~e~l~~---~~~~~s~v~s~~~~~~~~~a~S~dG~vLvTgs~DG~IrvW~~~gl 923 (927)
.|+.+.+|+...... ...|..++. +++|+|+|++|++|+.||..+.|+.|..
T Consensus 293 -~dg~i~iwd~~~~~~~~~~~~~~~~v~--------~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 293 -SDGRFSFWDKDARTKLKTSEQLDQPIS--------ACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp -TTSCEEEEETTTTEEEEECCCCSSCEE--------EEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred -cCCeEEEEECCCCcEEEEecCCCCCce--------EEEECCCCCeEEEEecccccccccccCC
Confidence 788999999874422 224444443 4799999999999999998888886654
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=4.4e-25 Score=252.37 Aligned_cols=309 Identities=12% Similarity=0.068 Sum_probs=240.6
Q ss_pred EccCce--EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc
Q 002407 426 HGQERV--RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 426 ~g~~~~--~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
.+..++ +|..++...+.+ ...+.+..|. .+.+++|+|++.++++++.|+.|++||+.+++....+......++.
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~---~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITH---RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSE---EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred cccCCCceEEEEECCCCCcc---eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 344555 556665543322 2334455554 4669999998888888889999999999988766543322334677
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecCC-cEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSKS-QHL 581 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~spd-~~L 581 (927)
..+..+.+++++.+++++..++.+ .+|++. .+.+..+..|...+.+++|+|+ ..+
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v-----------------------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 226 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAV-----------------------HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLV 226 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEE-----------------------EEEETTTCCEEEEEECSSSSEEEEEEETTTTEE
T ss_pred CceeEEEEcCCCEEEEEECCCCEE-----------------------EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEE
Confidence 788899999999999888777766 344443 4667778889999999999998 556
Q ss_pred -EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE--------CCCcEEEEeCCCCcEEEeccCCCcE
Q 002407 582 -LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS--------LDAKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 582 -~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs--------~Dg~I~IWDl~t~~~v~~~~~~~~V 652 (927)
++++.|+.|++||+.+++.+..+.+...+.+++|+| ++++|++++ .|+.|++||+.+++.+....+...+
T Consensus 227 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 305 (433)
T 3bws_A 227 YCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE
T ss_pred EEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc
Confidence 455589999999999999998888777899999999 898998888 5889999999999988877777789
Q ss_pred EEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----------
Q 002407 653 TAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---------- 721 (927)
Q Consensus 653 ~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---------- 721 (927)
..++|+|+++.+ ++++.++.|++||+.+++....+ .+...+.+++|+|++. .|++++.
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~----------~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI----------PVFDKPNTIALSPDGK-YLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSSEEEEEECTTSS-EEEEEECCCCCTTTCTT
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe----------cCCCCCCeEEEcCCCC-EEEEEecCCCccccccc
Confidence 999999999765 55688999999999988876553 3556799999999987 5666655
Q ss_pred -----CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC-CCcEEEEECCC
Q 002407 722 -----DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE-DSYVYVWKYEA 774 (927)
Q Consensus 722 -----Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s 774 (927)
||.|++||........... ....+..++|+|+|++|++++. |+.|+||+++.
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVKEFWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cccccceEEEEEECCCCcEEEEec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 5799999975543332222 2456899999999999998875 99999999864
No 110
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=7.2e-26 Score=257.49 Aligned_cols=206 Identities=15% Similarity=0.248 Sum_probs=172.6
Q ss_pred EEccCCCCEEEEEecC-C-cEEEEEeCCCcEEEEeCCCC-------cEEEEEe-cCCceEEEEEccCCC-CEEEEEECCC
Q 002407 562 SFQGHLDDVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSK-------TCLKIFS-HSDYVTCIQFNPVDD-RYFISGSLDA 630 (927)
Q Consensus 562 ~l~gH~~~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~-------~~~~~~~-h~~~V~~v~fsp~dg-~~L~sgs~Dg 630 (927)
.+.+|.+.|++++|+| + .+|++++.|++|+|||+.++ +++..+. |...|++++|+| ++ ++|++++.|+
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg 154 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDN 154 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTS
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCC
Confidence 4568999999999999 6 78999999999999999987 5566665 999999999999 65 7999999999
Q ss_pred cEEEEeCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC-eEEE
Q 002407 631 KVRIWSIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK-ITGF 706 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~-Vtsl 706 (927)
.|++||+.+++.+..+ .+...|.+++|+|++++|++++.|+.|++||+++++....+. ..|... +.++
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~ 226 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD--------RPHEGTRPVHA 226 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE--------CSSCSSSCCEE
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec--------cCCCCCcceEE
Confidence 9999999999887654 577899999999999999999999999999999988776642 245554 8999
Q ss_pred EEcCCCCcEEEEE---ECCCcEEEEECCcceE--EEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCCCC
Q 002407 707 QFAPGSSSEVLVT---SADSRIRVVDGIDLVH--KFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAESR 777 (927)
Q Consensus 707 ~fspdg~~~Llsg---s~Dg~I~VwD~~~~~~--~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~~~ 777 (927)
+|+|++. +|+++ +.|+.|++||...... ......+...+..++|+|++++|+++ +.|+.|++|++.++..
T Consensus 227 ~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 227 VFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 9999875 67777 6899999999765321 22223456679999999999999754 4799999999998764
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=1.6e-25 Score=251.39 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=203.0
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeec-ccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la-~~~~~~~i~ 528 (927)
+++.+|.+.|++|+|+|||++||+|+.|+ ++||++.+.+...... . ..+..+.+.+....++ ++..++.+
T Consensus 13 ~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d~~v- 83 (355)
T 3vu4_A 13 VPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---M----RHLSKVRMLHRTNYVAFVTGVKEVV- 83 (355)
T ss_dssp ------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---C----SCCCEEEECTTSSEEEEECSSTTEE-
T ss_pred cccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---c----CCeEEEEEcCCCCEEEEEECCccEE-
Confidence 45688999999999999999999998775 7899988765443321 1 1244455556555543 34444444
Q ss_pred eecccccccccccccCcccccceEeec-CCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCC-cEEEEEec
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSK-TCLKIFSH 606 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~-~~~~~~~h 606 (927)
.+|+. +++.+..+. |...|.++.|+++..+++ .|+.|++||+.++ +.+..+..
T Consensus 84 ----------------------~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 84 ----------------------HIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp ----------------------EEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE
T ss_pred ----------------------EEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc
Confidence 45554 345566665 677999999998754443 4889999999988 66555544
Q ss_pred CCceEEEEEccCCCCEEEE--EECCCcEEEEeCCCCc-----------------EEEeccCCCcEEEEEECCCCCEEEEE
Q 002407 607 SDYVTCIQFNPVDDRYFIS--GSLDAKVRIWSIPERQ-----------------VVDWNDLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~s--gs~Dg~I~IWDl~t~~-----------------~v~~~~~~~~V~sla~spdg~~l~tg 667 (927)
....+++++ .++++ |+.||.|++||+.++. ......|...|++++|+|+|++|++|
T Consensus 139 --~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 139 --FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp --EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 455566766 55655 5889999999999865 45567788999999999999999999
Q ss_pred ECCCe-EEEEECCCCeeeeecccccccccccC-CCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce----EE-----
Q 002407 668 SYKGS-CHLYNTSENKLQQKSPINLQNKKKRS-HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV----HK----- 736 (927)
Q Consensus 668 s~Dg~-I~IwDl~~~~~~~~~~i~~~~~~~~~-h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~----~~----- 736 (927)
+.|++ |+|||+.+++.+..+. .+ |...|++++|+|++. +|++++.|++|+|||..... ..
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~--------~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFR--------RGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEE--------CTTCCSCEEEEEECTTSC-EEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred eCCCCEEEEEECCCCcEEEEEE--------cCCCCCcEEEEEECCCCC-EEEEEECCCEEEEEEccCCCCccccccccee
Confidence 99998 9999999998877653 13 889999999999987 89999999999999954321 11
Q ss_pred -------------EEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 737 -------------FKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 737 -------------~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+... ........++|++++++|++++.||.+++|++..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0000 0112235689999999999999999999999976543
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=2.5e-26 Score=261.72 Aligned_cols=255 Identities=15% Similarity=0.150 Sum_probs=172.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|.+.+....+++++.+||+|+.|++|+|||+.+++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~--------------------------------------- 126 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ--------------------------------------- 126 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------------------------------------
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------------------------------------
Confidence 34556666666677888999999999999999876643221
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC--------C-cEEEEEeCCCcEEEEeCCCCcEEE-
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK--------S-QHLLSSSMDKTVRLWHLSSKTCLK- 602 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp--------d-~~L~Sgs~DgtV~lWDl~t~~~~~- 602 (927)
.++..+.||.+.|++++|+| + .+|++++.|++|+|||+.++.++.
T Consensus 127 -------------------------~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 127 -------------------------HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp -------------------------EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred -------------------------eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 11224568999999999987 4 679999999999999998776554
Q ss_pred EEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--------------------------ccCCCcEEEEE
Q 002407 603 IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--------------------------NDLHEMVTAAC 656 (927)
Q Consensus 603 ~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--------------------------~~~~~~V~sla 656 (927)
.+.|...|.+++|+|.+..+|++++.|++|++||+.+++.... ..+...+.++.
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 5569999999999994446899999999999999988754321 23445677888
Q ss_pred EC-CCCCEEEEEECCCeEEEEECCCCeeeeeccccc----------ccccccCCCCCeEEEEEcC-CCCcEEEEEECCCc
Q 002407 657 YT-PDGQGALVGSYKGSCHLYNTSENKLQQKSPINL----------QNKKKRSHQRKITGFQFAP-GSSSEVLVTSADSR 724 (927)
Q Consensus 657 ~s-pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~----------~~~~~~~h~~~Vtsl~fsp-dg~~~Llsgs~Dg~ 724 (927)
|+ |+++.|++++.|+.+++||+..++....+.... .......+...+ ...|+| .+..++++++.|+.
T Consensus 262 ~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 262 WIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLL-GACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp EETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSS-CCEECSSCTTEEEEEETTTTE
T ss_pred eecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcce-eEEEccCCCCEEEEEECCCCE
Confidence 86 799999999999999999998776544332100 000011122222 333444 34445666788999
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
|+|||............+...|.+++|+|||++||+++.+| +.+|++.
T Consensus 341 V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 341 IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 99999654433333344567899999999999999998766 7777664
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.94 E-value=1.6e-25 Score=252.68 Aligned_cols=265 Identities=15% Similarity=0.125 Sum_probs=198.3
Q ss_pred ceEEEEeccCcccccc---e--eeeeEeecCCCCEEEEEEcCCCCEEEEE-----------eCCCcEEEEecCcCcccce
Q 002407 430 RVRVRQYGKSCKDLTA---L--YKCQEIQAHNGSIWSIKFSLDGRYLASA-----------GEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~---l--~~~q~L~gH~~~I~~vafSpdG~~LaSg-----------s~DgtVrVWdv~~~~~~~~ 493 (927)
+.+|++|+...+.... + .....|.+|...|.+++++ ++++++| +.|+.|++|++........
T Consensus 42 ~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~ 119 (365)
T 4h5i_A 42 PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLE 119 (365)
T ss_dssp CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEE
T ss_pred CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEE
Confidence 4479999876544321 1 1223577899999988775 4566665 4578899999876543332
Q ss_pred eec----ccccCccccEEEEccCCCCCeecc--cccCCceeeecccccccccccccCcccccceEeecCC-CceEEEccC
Q 002407 494 LLE----KQEDGHLNMLLLANGSPEPTSLSP--KHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD-KPICSFQGH 566 (927)
Q Consensus 494 l~~----~~~~~~~~~v~~v~~spd~~~la~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~-k~i~~l~gH 566 (927)
+.. .....+...+..++|+||+.+++. +..++.+ ++|+... +++..+ .|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i-----------------------~iwd~~~~~~~~~~-~~ 175 (365)
T 4h5i_A 120 FLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIM-----------------------RIIDPSDLTEKFEI-ET 175 (365)
T ss_dssp EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEE-----------------------EEEETTTTEEEEEE-EC
T ss_pred EeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEE-----------------------EEeECCCCcEEEEe-CC
Confidence 221 112233455788999999998764 4455655 4455433 444455 48
Q ss_pred CCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEccCCCCEEEEEECCC----cEEEEeCC
Q 002407 567 LDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIF---SHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIP 638 (927)
Q Consensus 567 ~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWDl~ 638 (927)
...|.+++|+|++ +|++++ ++.+++|+..+++.+... .|...|.+++|+| ++.++++++.|+ .+++|++.
T Consensus 176 ~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 176 RGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp SSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEE
T ss_pred CCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccc
Confidence 8899999999995 555555 666778887777766443 2888999999999 999999999887 58889987
Q ss_pred CCcE-----EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 639 ERQV-----VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 639 t~~~-----v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
.... .....+...|++++|+|+|++|++|+.|++|+|||+.+++++..+. .+|...|++++|+|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~--------~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFK--------QAHSFAITEVTISPDST 325 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEET--------TSSSSCEEEEEECTTSC
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEec--------CcccCCEEEEEECCCCC
Confidence 6643 2345667899999999999999999999999999999998876642 48999999999999987
Q ss_pred cEEEEEECCCcEEEEECC
Q 002407 714 SEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 714 ~~Llsgs~Dg~I~VwD~~ 731 (927)
+|++++.|++|+|||..
T Consensus 326 -~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 326 -YVASVSAANTIHIIKLP 342 (365)
T ss_dssp -EEEEEETTSEEEEEECC
T ss_pred -EEEEEeCCCeEEEEEcC
Confidence 89999999999999953
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=250.33 Aligned_cols=269 Identities=6% Similarity=0.003 Sum_probs=202.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..+++|..++.|++|+..+++....+ . ...|.++.|+|+ |++++.|++|++|+......
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~-----~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~----------- 107 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTI-----T--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQIT----------- 107 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEE-----E--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEE-----------
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEE-----e--cCCceeeeeCCc---eEEecCCCeEEEEEccCceE-----------
Confidence 45788999999999998776554322 2 567888899988 99999999999998754211
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEE-ccCCCCEEEEEecC--
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSF-QGHLDDVLDLSWSK-- 577 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l-~gH~~~V~~l~~sp-- 577 (927)
+++.. .+.+..+ .+|.+.|.+++|+|
T Consensus 108 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 137 (343)
T 3lrv_A 108 --------------------------------------------------ILDSKTNKVLREIEVDSANEIIYMYGHNEV 137 (343)
T ss_dssp --------------------------------------------------EEETTTCCEEEEEECCCSSCEEEEECCC--
T ss_pred --------------------------------------------------EeecCCcceeEEeecCCCCCEEEEEcCCCC
Confidence 11111 1112222 36788999999999
Q ss_pred C-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE--Eecc-CCCc
Q 002407 578 S-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV--DWND-LHEM 651 (927)
Q Consensus 578 d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v--~~~~-~~~~ 651 (927)
+ .+|++++.|++|++||+.+++++..+. |...|++++|+| ++.+|++|+.|+.|++||+++++.+ .+.. |...
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 216 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK 216 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence 7 789999999999999999999977764 566899999999 9999999999999999999998865 4444 6789
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCe--EEEEEcCCCCcEEEEEEC-CCcEEEE
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI--TGFQFAPGSSSEVLVTSA-DSRIRVV 728 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V--tsl~fspdg~~~Llsgs~-Dg~I~Vw 728 (927)
|++++|+|++.+|++++ ++.|++||+++.+....+... ..+...+ .+++|+|++. +|++++. |+.|+||
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~-~l~~~s~~d~~i~v~ 288 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTY------TIPEFKTGTVTYDIDDSGK-NMIAYSNESNSLTIY 288 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCC------BC-----CCEEEEECTTSS-EEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccc------ccccccccceEEEECCCCC-EEEEecCCCCcEEEE
Confidence 99999999999999999 559999999987655433210 1122223 4799999987 7888887 9999999
Q ss_pred ECCcceEEEEeecCCcceEEEEEec---CCCEEEEEECCCcEEEEECCC
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTA---NGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fsp---dg~~Lasgs~Dg~I~IWdl~s 774 (927)
+.......+.. .++..++|.+ +.+.|++++.|+.+.++-...
T Consensus 289 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 289 KFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 85433222222 3466788888 889999999999999886543
No 115
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.6e-25 Score=249.31 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=177.2
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccc
Q 002407 463 KFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLS 542 (927)
Q Consensus 463 afSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~ 542 (927)
.+.+++.+||+|+.||+|+|||+.+++.+..+.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------------------------------- 75 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------------------------------- 75 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----------------------------------------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----------------------------------------------
Confidence 455688899999999999999998776443321
Q ss_pred cCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCC---------CCcEEEEEe--cCCceE
Q 002407 543 LDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLS---------SKTCLKIFS--HSDYVT 611 (927)
Q Consensus 543 ~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~---------t~~~~~~~~--h~~~V~ 611 (927)
...|.++.|+|+ +++++.|++|++|+.. +++.+..+. |...|.
T Consensus 76 ------------------------~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 129 (343)
T 3lrv_A 76 ------------------------TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII 129 (343)
T ss_dssp ------------------------EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE
T ss_pred ------------------------cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE
Confidence 123444556666 8888889998888655 666555554 668899
Q ss_pred EEEEcc-CCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee-eec
Q 002407 612 CIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ-QKS 687 (927)
Q Consensus 612 ~v~fsp-~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~-~~~ 687 (927)
+++|+| .++++|++++.|+.|++||+.+++.+... .+...+++++|+|++.+|++|+.||.|++||+++++.. ..+
T Consensus 130 ~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 130 YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRF 209 (343)
T ss_dssp EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEEC
T ss_pred EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEE
Confidence 999998 35789999999999999999999887654 33457999999999999999999999999999998765 333
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE--EEeec-CCcce--EEEEEecCCCEEEEEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK--FKGFR-NTNSQ--ISASLTANGRYVVSAS 762 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~--~~~~~-~~~~v--~sv~fspdg~~Lasgs 762 (927)
. ..|...|++++|+|++. +|++++ ++.|++||.+..... +..+. +...+ .+++|+|+|++|++++
T Consensus 210 ~--------~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 210 P--------VDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp C--------CCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred e--------ccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 2 13889999999999986 788888 559999997543221 11100 11112 4699999999999999
Q ss_pred C-CCcEEEEECCCCCC
Q 002407 763 E-DSYVYVWKYEAESR 777 (927)
Q Consensus 763 ~-Dg~I~IWdl~s~~~ 777 (927)
. |+.|+||++.....
T Consensus 280 ~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 280 NESNSLTIYKFDKKTK 295 (343)
T ss_dssp TTTTEEEEEEECTTTC
T ss_pred CCCCcEEEEEEccccc
Confidence 8 99999999976543
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-24 Score=251.05 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=218.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc---ccceeecccc----------------------------------
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE---RKGELLEKQE---------------------------------- 499 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~---~~~~l~~~~~---------------------------------- 499 (927)
.+|.+|+|+|+|++|+++ .++.|++||+.+++ .+..+.....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999977766 47899999999888 4443321100
Q ss_pred ---------------cCccccEEEEccCCCCCee-cccccCCceeeecccccccccccccCcccccceEeecC---CCce
Q 002407 500 ---------------DGHLNMLLLANGSPEPTSL-SPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS---DKPI 560 (927)
Q Consensus 500 ---------------~~~~~~v~~v~~spd~~~l-a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s---~k~i 560 (927)
..+...|.+++|+|++..| +++..++.+ .+|++. ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v-----------------------~iwd~~~~~~~~~ 140 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSL-----------------------LVFDVDKTSKNVL 140 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEE-----------------------EEEEECSSSSSCE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeE-----------------------EEEECcCCCCcee
Confidence 1233368999999999986 777777776 344433 4555
Q ss_pred EEEc--cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEE----EE-ecCCceEEEEEccCC---CCEEEEEECC
Q 002407 561 CSFQ--GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLK----IF-SHSDYVTCIQFNPVD---DRYFISGSLD 629 (927)
Q Consensus 561 ~~l~--gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~----~~-~h~~~V~~v~fsp~d---g~~L~sgs~D 629 (927)
..+. .|...|++++|+|+ .+|++++.++.|++|++.+++... .+ .|...|++++|+| + +++|++++.|
T Consensus 141 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 141 KLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRD 219 (450)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETT
T ss_pred eeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC-CCCCCcEEEEEcCC
Confidence 6665 67789999999998 789999999999999998876543 33 4999999999999 8 8899999999
Q ss_pred CcEEEEeCCCCcEEEe-c-cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc-------------
Q 002407 630 AKVRIWSIPERQVVDW-N-DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK------------- 694 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~-~-~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~------------- 694 (927)
+.|++||+.+++.+.. . .|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+.......
T Consensus 220 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 220 EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----
T ss_pred CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccc
Confidence 9999999999887653 3 577899999999 99999999999999999999998776654221000
Q ss_pred ---cccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEEC--Cc---ceEEEEeecCCcceEEEEEecCCCEEEEEEC--
Q 002407 695 ---KKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDG--ID---LVHKFKGFRNTNSQISASLTANGRYVVSASE-- 763 (927)
Q Consensus 695 ---~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~--~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-- 763 (927)
........|.+++|+|++. +|++++ .++.|+||+. .. +........ ...+.+++|+|++.++++++.
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~-~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~~~~~~~~~~~v~~~~~~~ 376 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLP-FVAFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVISLSAHNDEFQVTLDNKES 376 (450)
T ss_dssp ------CBCCCEEEEEECSSSS-EEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEEEEEEETTEEEEEECCTTC
T ss_pred cccccccceEEEEEEEEeCCCC-EEEEEECCCCeEEEEEeccCCCCceeeccEecc-CCceEEEEecCCcEEEEEecccC
Confidence 0012346799999999887 677777 8999999997 22 122222222 377999999996544444343
Q ss_pred ----CCcEEEEECCCC
Q 002407 764 ----DSYVYVWKYEAE 775 (927)
Q Consensus 764 ----Dg~I~IWdl~s~ 775 (927)
+..|.||.+...
T Consensus 377 ~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 377 SGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSSCCCSEEEEEEETT
T ss_pred CCCCCcceEEEEEEcC
Confidence 455889887653
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6e-25 Score=256.45 Aligned_cols=303 Identities=10% Similarity=0.086 Sum_probs=221.8
Q ss_pred eeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccc
Q 002407 413 SSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKG 492 (927)
Q Consensus 413 ~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~ 492 (927)
.++...|+ ..+++++.+++|+ +.. .. +.+.+|.+.|++|+|+|+| .++++.+|+..... ..
T Consensus 20 sv~~SpDG-~~iASas~D~TV~--d~~---~~-----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~~ 80 (588)
T 2j04_A 20 NLTWARDG-TLYLTTFPDISIG--QPK---YA-----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-LL 80 (588)
T ss_dssp CEEECTTS-CEEEECSSSEEEE--EEC---CC-----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-SS
T ss_pred EEEECCCC-CEEEEEcCCceee--ccc---cc-----ceecCCCccEEEEEECCCC-------CcceEEEEeCCCce-Ee
Confidence 34444444 3457778888888 322 11 3457999999999999999 56666666543222 11
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC----
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD---- 568 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~---- 568 (927)
. ..+...|..++|+|++..+++++.++.+. +|+... .+..+. |..
T Consensus 81 ~------~~~~~~V~~vawSPdG~~LAs~s~dg~V~-----------------------iwd~~~-~l~~l~-~~~~~~~ 129 (588)
T 2j04_A 81 N------SQPVCYPRVCKPSPIDDWMAVLSNNGNVS-----------------------VFKDNK-MLTNLD-SKGNLSS 129 (588)
T ss_dssp T------TSCSCCEEEEEECSSSSCEEEEETTSCEE-----------------------EEETTE-EEEECC-CSSCSTT
T ss_pred e------cCCCCcEEEEEECCCCCEEEEEeCCCcEE-----------------------EEeCCc-eeeecc-CCCcccc
Confidence 1 13367899999999999999999998874 343222 455556 665
Q ss_pred -CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCc-------EEEEEe-----cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 569 -DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKT-------CLKIFS-----HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 569 -~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~-------~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.|.+++|+|+ .+|++|+.||+|+|||+.++. .+.++. |...|.+++|+| ++ |++++.|++|++
T Consensus 130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrl 206 (588)
T 2j04_A 130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFS 206 (588)
T ss_dssp TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEE
T ss_pred ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEE
Confidence 5999999999 789999999999999999885 356652 678999999999 77 888999999999
Q ss_pred EeCCCCcEE---Eec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE-
Q 002407 635 WSIPERQVV---DWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF- 708 (927)
Q Consensus 635 WDl~t~~~v---~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f- 708 (927)
||+.++... ..+ .+...|.+++|+ |+.|++++ ++.|++||+.+++..... .+|...|..++|
T Consensus 207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~---------~gh~~~V~~va~~ 274 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK---------TGSLENFHIIPLN 274 (588)
T ss_dssp ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE---------CSCCSCCCEEEET
T ss_pred EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE---------cCCCceEEEEEee
Confidence 999887742 232 456789999999 68899887 699999999988874331 379999999999
Q ss_pred -cCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCccccccccee
Q 002407 709 -APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVT 787 (927)
Q Consensus 709 -spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~ 787 (927)
+|++. .|++++.+|+ ++|... .++++||+..+++. |+++++|+...... ..... ...
T Consensus 275 ~s~d~~-~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g~~l-~~~~~-~~~ 332 (588)
T 2j04_A 275 HEKEST-ILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIWNEF-NNYET-TLV 332 (588)
T ss_dssp TCSSCE-EEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTTTSS-SSSCC-EEE
T ss_pred eCCCCC-EEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCCCce-eeecc-ceE
Confidence 99875 7888999999 999854 15588888777765 88888888755432 22222 222
Q ss_pred eeeeeecCCCeEEEE
Q 002407 788 HSYEHFHCQDVSVAI 802 (927)
Q Consensus 788 ~~~~~~~~~~v~vav 802 (927)
.....|++++..+|+
T Consensus 333 I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 333 IHGISLSPDGYSIAI 347 (588)
T ss_dssp EEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 333455555544443
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=1.1e-23 Score=242.39 Aligned_cols=249 Identities=17% Similarity=0.276 Sum_probs=192.8
Q ss_pred CCCeEEEccCceEEEEeccCcccc-----cceeeeeEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccce
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDL-----TALYKCQEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l-----~~l~~~q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
...+++++..++.|++|+...... ........+.+|.+.|++|+|+|++. +|++|+.||.|+||++..+.....
T Consensus 140 ~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 219 (430)
T 2xyi_A 140 NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR 219 (430)
T ss_dssp EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG
T ss_pred CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence 345778888899999999865210 01334567789999999999999998 999999999999999976432111
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
.. .+...+.+|...|.++
T Consensus 220 ~~--------------------------------------------------------------~~~~~~~~h~~~v~~v 237 (430)
T 2xyi_A 220 VI--------------------------------------------------------------DAKNIFTGHTAVVEDV 237 (430)
T ss_dssp EE--------------------------------------------------------------ECSEEECCCSSCEEEE
T ss_pred ee--------------------------------------------------------------ccceeecCCCCCEeee
Confidence 00 1234566899999999
Q ss_pred EecCC--cEEEEEeCCCcEEEEeCCCC---cEEEEE-ecCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCC-CcE-EE
Q 002407 574 SWSKS--QHLLSSSMDKTVRLWHLSSK---TCLKIF-SHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPE-RQV-VD 644 (927)
Q Consensus 574 ~~spd--~~L~Sgs~DgtV~lWDl~t~---~~~~~~-~h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t-~~~-v~ 644 (927)
+|+|+ ..|++++.|+.|++||+.++ +.+..+ .|...|++|+|+| ++. +|++|+.||.|++||+++ ... ..
T Consensus 238 ~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC-CCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 99994 68899999999999999987 455555 4999999999999 554 799999999999999987 333 34
Q ss_pred eccCCCcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeeccc-----ccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 645 WNDLHEMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPI-----NLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i-----~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
+..|...|++++|+|+++ +|++++.|+.|+|||+..........- .........|...|++++|+|+++.+|++
T Consensus 317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 556788999999999985 699999999999999987321110000 00001124788899999999998878999
Q ss_pred EECCCcEEEEECC
Q 002407 719 TSADSRIRVVDGI 731 (927)
Q Consensus 719 gs~Dg~I~VwD~~ 731 (927)
++.|+.|+||+..
T Consensus 397 ~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 397 VSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSEEEEEEEC
T ss_pred EECCCCEEEeEcc
Confidence 9999999999954
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=1.6e-22 Score=227.87 Aligned_cols=237 Identities=9% Similarity=0.079 Sum_probs=182.6
Q ss_pred CCEEEEEecCC-cEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEE-EECCCcEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFIS-GSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd-~~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~s-gs~Dg~I~IWDl~t~~~v~ 644 (927)
..+.+++|+|+ .+| ++++.|++|++||+.+++.+..+.+...+.+++|+| ++++|++ ++.++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC-CCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 34899999999 455 677799999999999999999998777999999999 8887754 5567999999999999988
Q ss_pred eccCCCcEEEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 645 WNDLHEMVTAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
...++..+.+++|+|++++| ++++.++.|++||+.+++....+. ....+.+++|+|++..++++++.++
T Consensus 111 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~~~dg~~l~~~~~~~~ 180 (391)
T 1l0q_A 111 TVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS----------VGRSPKGIAVTPDGTKVYVANFDSM 180 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------CCSSEEEEEECTTSSEEEEEETTTT
T ss_pred EEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe----------cCCCcceEEECCCCCEEEEEeCCCC
Confidence 88888899999999999987 677779999999999988776542 2356799999999985557778899
Q ss_pred cEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE---CCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEE
Q 002407 724 RIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS---EDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSV 800 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs---~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~v 800 (927)
.|++||.......... .+...+..++|+|++++|++++ .++.|++||+.++.......... ......+++++..+
T Consensus 181 ~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 181 SISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp EEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEE
T ss_pred EEEEEECCCCeEEEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEE
Confidence 9999997654433222 2355788999999999999888 68999999998865433332211 12334555555433
Q ss_pred --EEecCCceeEEeecCCc
Q 002407 801 --AIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 801 --avs~~g~~~i~~~~d~~ 817 (927)
+...++.+.+|......
T Consensus 259 ~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 259 YVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEECCCCc
Confidence 33445667777765443
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=259.54 Aligned_cols=208 Identities=18% Similarity=0.243 Sum_probs=171.2
Q ss_pred EEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCC--CCcEEEEEe-cCCceEEEEEccCC--CCEEEEEECCCcEEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLS--SKTCLKIFS-HSDYVTCIQFNPVD--DRYFISGSLDAKVRI 634 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~--t~~~~~~~~-h~~~V~~v~fsp~d--g~~L~sgs~Dg~I~I 634 (927)
..+.+|.+.|++++|+|+ .+|++|+.||+|+|||+. +++.+..+. |...|++++|+| + +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEE
Confidence 467899999999999998 779999999999999998 445666665 999999999998 6 899999999999999
Q ss_pred EeCCCCc---EEEeccCCCcEEEEEECCC--CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 635 WSIPERQ---VVDWNDLHEMVTAACYTPD--GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 635 WDl~t~~---~v~~~~~~~~V~sla~spd--g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
||+.+++ ......+...|++++|+|+ +.++++|+.||.|++||+.++....... ...|...|++++|+
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~-------~~~~~~~v~~l~~~ 154 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-------IDAHAIGVNSASWA 154 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEE-------EECCSSCEEEEEEC
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeE-------eecCCCceEEEEec
Confidence 9999885 3345567789999999999 9999999999999999998874433222 14788999999999
Q ss_pred CC------------CCcEEEEEECCCcEEEEECCcc----eEEEEeecCCcceEEEEEecC---CCEEEEEECCCcEEEE
Q 002407 710 PG------------SSSEVLVTSADSRIRVVDGIDL----VHKFKGFRNTNSQISASLTAN---GRYVVSASEDSYVYVW 770 (927)
Q Consensus 710 pd------------g~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~~~~~v~sv~fspd---g~~Lasgs~Dg~I~IW 770 (927)
|. +..+|++++.||.|++||.... ........+...|.+++|+|+ +++|++++.||.|+||
T Consensus 155 p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp CCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred CcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 94 2348999999999999995432 222333446788999999999 9999999999999999
Q ss_pred ECCCCC
Q 002407 771 KYEAES 776 (927)
Q Consensus 771 dl~s~~ 776 (927)
|+.++.
T Consensus 235 d~~~~~ 240 (753)
T 3jro_A 235 TQDNEQ 240 (753)
T ss_dssp EESSSS
T ss_pred cCCCCC
Confidence 999864
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.8e-23 Score=237.65 Aligned_cols=242 Identities=12% Similarity=0.071 Sum_probs=188.0
Q ss_pred ecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecC--cCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 453 QAHNGSIWSIKFSLDGRYL-ASAGEDCVIHVWQVV--ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~L-aSgs~DgtVrVWdv~--~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.+|.+.|++|+|+|+|++| |+|+.||.|+||++. +++....+.. ..+...+.++.|+|++.+++++..++.+..
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR---FCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec---ccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 4677799999999999996 899999999999998 6666555431 234567889999999999999877776643
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---c-EEEEEeCCCcEEEEeCCCCcEEEEE-
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---Q-HLLSSSMDKTVRLWHLSSKTCLKIF- 604 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~-~L~Sgs~DgtV~lWDl~t~~~~~~~- 604 (927)
+....... ...++..+.+|...|++++|+|+ + +|++++.|++|++||+.+++++..+
T Consensus 176 ~~~~~~~~------------------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 176 IDINSIPE------------------EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp EETTSCCC------------------SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEEC
T ss_pred EecCCccc------------------ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeee
Confidence 32111000 00033366789999999999997 6 6999999999999999999888774
Q ss_pred -ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc--------------------------CCCcEEEEEE
Q 002407 605 -SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND--------------------------LHEMVTAACY 657 (927)
Q Consensus 605 -~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~--------------------------~~~~V~sla~ 657 (927)
.|...|++++|+ ++++|++++.|+.|++||+.+++++..+. ....|..++|
T Consensus 238 ~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 238 FGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred cCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 399999999999 89999999999999999999998776443 2346899999
Q ss_pred CCCCCEEEEEE-CCCeEEEEEC--CCC---eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC-------CCc
Q 002407 658 TPDGQGALVGS-YKGSCHLYNT--SEN---KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-------DSR 724 (927)
Q Consensus 658 spdg~~l~tgs-~Dg~I~IwDl--~~~---~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~-------Dg~ 724 (927)
+|++++|++++ .++.|+||++ ..+ .....+ ..+ ..|.+++|+|++ ++++.+. +..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~---------~~~-~~v~~~~~~~~~--~~v~~~~~~~~~~~~~~ 383 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII---------TFP-YNVISLSAHNDE--FQVTLDNKESSGVQKNF 383 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE---------ECS-SCEEEEEEETTE--EEEEECCTTCCSSCCCS
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe---------ccC-CceEEEEecCCc--EEEEEecccCCCCCCcc
Confidence 99999999999 8999999999 444 333322 244 789999999943 4555433 445
Q ss_pred EEEEE
Q 002407 725 IRVVD 729 (927)
Q Consensus 725 I~VwD 729 (927)
|.+|.
T Consensus 384 i~v~~ 388 (450)
T 2vdu_B 384 AKFIE 388 (450)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 77776
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=4.6e-24 Score=242.97 Aligned_cols=228 Identities=14% Similarity=0.140 Sum_probs=171.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSL--------DGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSp--------dG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
.+++++..+++|++|+...++.........+.+|++.|++|+|+| ||++|||||.|++|+|||+.++..
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~--- 178 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP--- 178 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE---
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce---
Confidence 457889999999999998887776666778899999999999998 899999999999999999865432
Q ss_pred eecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 494 LLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 494 l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
+..+.+|...|.++
T Consensus 179 ------------------------------------------------------------------~~~~~~~~~~v~~v 192 (393)
T 4gq1_A 179 ------------------------------------------------------------------ILAGYPLSSPGISV 192 (393)
T ss_dssp ------------------------------------------------------------------EEEEEECSSCEEEE
T ss_pred ------------------------------------------------------------------eeeecCCCCCcEEE
Confidence 22344688899999
Q ss_pred EecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE--------------------------ecCCceEEEEEccCCCCEEEE
Q 002407 574 SWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF--------------------------SHSDYVTCIQFNPVDDRYFIS 625 (927)
Q Consensus 574 ~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~--------------------------~h~~~V~~v~fsp~dg~~L~s 625 (927)
+|+|+ .+|++++.|++|++||+.+++..... .|...|.++.|.+.+++.|++
T Consensus 193 ~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s 272 (393)
T 4gq1_A 193 QFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA 272 (393)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE
T ss_pred EECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE
Confidence 99998 46999999999999999987654322 266788999998449999999
Q ss_pred EECCCcEEEEeCCCCcEEEec-cCCCcE------------------EEEEECC--CCCEEEEEECCCeEEEEECCCCeee
Q 002407 626 GSLDAKVRIWSIPERQVVDWN-DLHEMV------------------TAACYTP--DGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~-~~~~~V------------------~sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
++.|+.+++||+..++....+ .+...+ ....|+| ++.++++|+.||.|+|||+.+++..
T Consensus 273 ~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 273 MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 999999999999876543321 111111 2233443 3446677888999999999988765
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
... ..|...|++++|+|+|+ +|++++.+| +.+|.
T Consensus 353 ~~~---------~~~~~~V~svafspdG~-~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 353 SIP---------IQLGMPIVDFCWHQDGS-HLAIATEGS-VLLTR 386 (393)
T ss_dssp EEE---------EECSSCEEEEEECTTSS-EEEEEESSE-EEEEE
T ss_pred EEe---------cCCCCcEEEEEEcCCCC-EEEEEeCCC-eEEEE
Confidence 543 36778999999999997 788887666 55554
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.91 E-value=1.4e-22 Score=231.50 Aligned_cols=271 Identities=12% Similarity=0.139 Sum_probs=217.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
...+++++..++.|++|+..+++.........+.+|.+.|++++|+|+++++++++.|+.|++||+.+++....+.
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---- 208 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---- 208 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE----
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc----
Confidence 3445677777888999998887766544444667999999999999999999999999999999999887666542
Q ss_pred cCccccEEEEccCCCCCeec-ccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEecC
Q 002407 500 DGHLNMLLLANGSPEPTSLS-PKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~sp 577 (927)
.+...+..++++|++..++ ++..++.+ .+|++. ++.+..+.. ...+.+++|+|
T Consensus 209 -~~~~~~~~~~~~~~~~~l~~~~~~~~~i-----------------------~~~d~~~~~~~~~~~~-~~~~~~~~~~~ 263 (433)
T 3bws_A 209 -LTGKWSKILLYDPIRDLVYCSNWISEDI-----------------------SVIDRKTKLEIRKTDK-IGLPRGLLLSK 263 (433)
T ss_dssp -CSSSSEEEEEEETTTTEEEEEETTTTEE-----------------------EEEETTTTEEEEECCC-CSEEEEEEECT
T ss_pred -CCCCCeeEEEEcCCCCEEEEEecCCCcE-----------------------EEEECCCCcEEEEecC-CCCceEEEEcC
Confidence 4556788899999988774 44355555 334432 334444444 44599999999
Q ss_pred C-cEEEEEe--------CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCC-EEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 578 S-QHLLSSS--------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDR-YFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 578 d-~~L~Sgs--------~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~-~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+ ..|++++ .|+.|++||+.+++.+..+.|...+.+++|+| +++ ++++++.|+.|++||+.+++++....
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~ 342 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKEKKVQKSIP 342 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCCCcEEEEec
Confidence 9 5788877 58899999999999988888888999999999 775 55677899999999999999888888
Q ss_pred CCCcEEEEEECCCCCEEEEEEC---------------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 648 LHEMVTAACYTPDGQGALVGSY---------------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~---------------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+...+.+++|+|++++|++++. ||.|++||+.+++....+. ....+.+++|+|++
T Consensus 343 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg 412 (433)
T 3bws_A 343 VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----------AGNQPTGLDVSPDN 412 (433)
T ss_dssp CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----------CSSSEEEEEECTTS
T ss_pred CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----------CCCCCceEEEcCCC
Confidence 8889999999999999998877 5799999999988776542 24578999999998
Q ss_pred CcEEEEEE-CCCcEEEEECC
Q 002407 713 SSEVLVTS-ADSRIRVVDGI 731 (927)
Q Consensus 713 ~~~Llsgs-~Dg~I~VwD~~ 731 (927)
. +|++++ .|+.|++|+..
T Consensus 413 ~-~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 413 R-YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp C-EEEEEETTTTEEEEEEET
T ss_pred C-EEEEEECCCCeEEEEEec
Confidence 7 566665 59999999854
No 124
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=6.3e-22 Score=253.30 Aligned_cols=345 Identities=10% Similarity=0.047 Sum_probs=225.5
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEecCcCcccceeecccccCccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED------CVIHVWQVVESERKGELLEKQEDGHLN 504 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D------gtVrVWdv~~~~~~~~l~~~~~~~~~~ 504 (927)
+.|++|+...++. +.|.+|.+.|.+++|||||++||+++.+ ..|++|++.+++. ..+ ..+..
T Consensus 33 ~~l~~~~~~gg~~------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~-~~l-----t~~~~ 100 (1045)
T 1k32_A 33 DDLWEHDLKSGST------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI-KRI-----TYFSG 100 (1045)
T ss_dssp TEEEEEETTTCCE------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE-EEC-----CCCCE
T ss_pred CcEEEEECCCCcE------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe-EEc-----ccCCC
Confidence 4789998876653 4567899999999999999999988654 3799999987652 222 23444
Q ss_pred cE-------EEEccCCCCCeecccccC------Cceeeecc-cccccccccc-cCc------------------c-----
Q 002407 505 ML-------LLANGSPEPTSLSPKHLD------NHLEKKRR-GRSINRKSLS-LDH------------------M----- 546 (927)
Q Consensus 505 ~v-------~~v~~spd~~~la~~~~~------~~i~~~~~-~~~~~~~~~~-~~~------------------~----- 546 (927)
.+ ..++|+|++.++++...+ ..+..+.. .......... ... .
T Consensus 101 ~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~ 180 (1045)
T 1k32_A 101 KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYR 180 (1045)
T ss_dssp EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCC
T ss_pred cccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCcccccccc
Confidence 45 789999999866665433 12322221 1110000000 000 0
Q ss_pred -cccceEee-cCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC--CcE----------------------
Q 002407 547 -VVPETVFA-LSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS--KTC---------------------- 600 (927)
Q Consensus 547 -~~~~~v~~-~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t--~~~---------------------- 600 (927)
.....+|. ........+.+|...+.++.|+++..+++++.|++++||.+.. +..
T Consensus 181 g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la 260 (1045)
T 1k32_A 181 GGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRIL 260 (1045)
T ss_dssp STTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEE
T ss_pred CCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEE
Confidence 00001111 1113344456677777777776664455556666666665321 111
Q ss_pred ----------------EEEEe------------cCCceEEEEEc-cCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCC-
Q 002407 601 ----------------LKIFS------------HSDYVTCIQFN-PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHE- 650 (927)
Q Consensus 601 ----------------~~~~~------------h~~~V~~v~fs-p~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~- 650 (927)
+..+. |...+.+++|+ | ++++|++++ ++.|.+|++.+++......+..
T Consensus 261 ~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~ 338 (1045)
T 1k32_A 261 FSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRI 338 (1045)
T ss_dssp EEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCE
T ss_pred EEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcc
Confidence 11111 12257889999 8 888888877 7889999998888777666666
Q ss_pred cEEEEEECCCCCEEEEEECCCeEE-EEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 651 MVTAACYTPDGQGALVGSYKGSCH-LYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~Dg~I~-IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..++|+ ||+.|+.++.++.+. +|++.++..... ..+...+..++|+|++. .|++++.++.|++||
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l----------~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF----------EENLGNVFAMGVDRNGK-FAVVANDRFEIMTVD 406 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC----------CCCCCSEEEEEECTTSS-EEEEEETTSEEEEEE
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe----------cCCccceeeeEECCCCC-EEEEECCCCeEEEEE
Confidence 89999999 999999999888898 999987754322 25667899999999987 788999999999999
Q ss_pred CCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC----------cEEEEECCCCCCcccccccceeeeeeeecCCCeE
Q 002407 730 GIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS----------YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVS 799 (927)
Q Consensus 730 ~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg----------~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~ 799 (927)
............+...+..++|+|||++|++++.++ .|++||+.++. ...............|.+++..
T Consensus 407 ~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 407 LETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp TTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred CCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence 754433333324566678899999999999887654 89999998765 3222222222233456666554
Q ss_pred EEE
Q 002407 800 VAI 802 (927)
Q Consensus 800 vav 802 (927)
+++
T Consensus 486 l~~ 488 (1045)
T 1k32_A 486 LYY 488 (1045)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=2e-22 Score=222.10 Aligned_cols=282 Identities=16% Similarity=0.137 Sum_probs=187.5
Q ss_pred EEEEEEcCCCC---EEEEEeCCCcEEEEecCcC---cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 459 IWSIKFSLDGR---YLASAGEDCVIHVWQVVES---ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 459 I~~vafSpdG~---~LaSgs~DgtVrVWdv~~~---~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
+.+|-|-..|- .++++++ .+|++|+..+. +....+ ..+..+|..+.+.|+..-|+....++.-.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---- 111 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTW-----HFAEVPVLQIVPVPDVYNLVCVALGNLEI---- 111 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEE-----ECCSSCEEEECCCTTCCSCEEEEECSSSE----
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEE-----eccCceeEEEEEcCcccceeeeeeccccc----
Confidence 44555644433 6788885 58999999988 555554 46667888999999754443322221100
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeC---CCcEEEEeCC-CCcEEEEEe-cC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSM---DKTVRLWHLS-SKTCLKIFS-HS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~---DgtV~lWDl~-t~~~~~~~~-h~ 607 (927)
..+....++.+.. ..+....-.+|...|..+ ++++++.++. |++|++|++. .++.+..+. |.
T Consensus 112 -~~v~sla~spd~~---------~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~ 178 (356)
T 2w18_A 112 -REIRALFCSSDDE---------SEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP 178 (356)
T ss_dssp -EEEEEECC---------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred -cceEEEEECCCcc---------ccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence 0011111111100 001222224566556555 5677776654 9999999994 477776655 88
Q ss_pred CceEEEEEccC--CCCEEEEEECCCcEEEEeCCCCcEEEecc-CC---CcEEEEEECCCCCEE------------EEEEC
Q 002407 608 DYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPERQVVDWND-LH---EMVTAACYTPDGQGA------------LVGSY 669 (927)
Q Consensus 608 ~~V~~v~fsp~--dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-~~---~~V~sla~spdg~~l------------~tgs~ 669 (927)
..+..++|+|. ++.+|++++.|++|+|||+.+++++..+. ++ ..+.+++|+|+|+++ ++|+.
T Consensus 179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence 88888888874 56899999999999999999999887664 32 367788999999887 55788
Q ss_pred CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcce-
Q 002407 670 KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQ- 746 (927)
Q Consensus 670 Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v- 746 (927)
|++|++||..+++.+..+.+.++ .+|...+.+..++ +. ++++++.|++|+|||... .+..+.+| ...+
T Consensus 259 D~tIklWd~~tgk~l~v~~~~~p----~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH--~~~vv 329 (356)
T 2w18_A 259 VFQLIVINPKTTLSVGVMLYCLP----PGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPV--SDQHW 329 (356)
T ss_dssp CEEEEEEETTTTEEEEEEEECCC----TTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC----CCC
T ss_pred CcEEEEEECCCCEEEEEEEeecc----CCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCC--CCCeE
Confidence 99999999999988765432211 2455555555554 33 789999999999999765 44555443 3333
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 747 ISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..++|+|||++|++|+.|++|+|||+
T Consensus 330 s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 330 SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEecC
Confidence 45899999999999999999999996
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=2.3e-22 Score=225.69 Aligned_cols=242 Identities=10% Similarity=0.092 Sum_probs=172.9
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
..|...|.+++|+|++.+++++..++. .+|+...... .+..+...+..+++.++
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~~------------------------~iw~~~~~~~-~~~~~~~~~~~~~~~~~~ 70 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKSF------------------------EIYNVHPVAH-IMSQEMRHLSKVRMLHRT 70 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSEE------------------------EEEEETTEEE-EEEEECSCCCEEEECTTS
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCEE------------------------EEEecCCcce-eeeeecCCeEEEEEcCCC
Confidence 456788999999999999998866642 1222221111 11122224677777776
Q ss_pred cEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCCCcEEEEE
Q 002407 579 QHL-LSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLHEMVTAAC 656 (927)
Q Consensus 579 ~~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~~~V~sla 656 (927)
+.+ ++++.|++|+|||+.+++++..+.+...|.+++|++ + .++++ .|+.|++||+.++ +.+..+.. ....++
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEE
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEE
Confidence 444 678889999999999999999999999999999987 3 34444 4789999999987 54443333 445566
Q ss_pred ECCCCCEEEE--EECCCeEEEEECCCCeeeeeccccc------c-cccccCCCCCeEEEEEcCCCCcEEEEEECCCc-EE
Q 002407 657 YTPDGQGALV--GSYKGSCHLYNTSENKLQQKSPINL------Q-NKKKRSHQRKITGFQFAPGSSSEVLVTSADSR-IR 726 (927)
Q Consensus 657 ~spdg~~l~t--gs~Dg~I~IwDl~~~~~~~~~~i~~------~-~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~-I~ 726 (927)
+++ .++++ |+.+|.|++||+.++.......... + ......|...|++++|+|++. +|++++.|++ |+
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIR 221 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEE
Confidence 777 56666 5889999999999765111000000 0 112358999999999999887 8999999998 99
Q ss_pred EEECCcceEEEEee-c-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 727 VVDGIDLVHKFKGF-R-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 727 VwD~~~~~~~~~~~-~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|||........... . +...|.+++|+|++++|++++.|+.|+|||+...
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 99976544433333 2 6788999999999999999999999999999875
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=3e-22 Score=220.67 Aligned_cols=212 Identities=12% Similarity=0.033 Sum_probs=156.6
Q ss_pred CCEEEEEEcCC----CCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 457 GSIWSIKFSLD----GRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 457 ~~I~~vafSpd----G~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
..|++|+|+|| ++++++++.+ ++||++.+++.+... ..++...|..++++|++.
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss----~~g~d~~V~~~~~s~dG~---------------- 169 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS----GTLSDQQVEVMTFAEDGG---------------- 169 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE----SSSTTCEEEEEEECTTSC----------------
T ss_pred cceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec----ccCCCCcEEEEEECCCCc----------------
Confidence 46777777778 8888888744 888988665543331 234555666666665544
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC---C-cEEEEEeCCCcEEEEeCCCCcEEEEEe-c-
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK---S-QHLLSSSMDKTVRLWHLSSKTCLKIFS-H- 606 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp---d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h- 606 (927)
.+..+.+|...+..++|++ + ..|++++.|++|+|||+.++++++++. |
T Consensus 170 --------------------------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 170 --------------------------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp --------------------------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred --------------------------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 3445567888888999988 4 689999999999999999999999996 3
Q ss_pred --CCceEEEEEccCCCCEE------------EEEECCCcEEEEeCCCCcEEEec------cCCCcEEEEEECCCCCEEEE
Q 002407 607 --SDYVTCIQFNPVDDRYF------------ISGSLDAKVRIWSIPERQVVDWN------DLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 607 --~~~V~~v~fsp~dg~~L------------~sgs~Dg~I~IWDl~t~~~v~~~------~~~~~V~sla~spdg~~l~t 666 (927)
...+.+++|+| ++.++ ++|+.|++|++||..+++.+..+ .+...+.+..+ ++.++++
T Consensus 224 ~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS 300 (356)
T 2w18_A 224 SYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA 300 (356)
T ss_dssp ---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE
T ss_pred cceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE
Confidence 34678889999 88876 56788999999999999876543 22333444443 3788999
Q ss_pred EECCCeEEEEECCCCeeeeecccccccccccCCCCCeE-EEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT-GFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt-sl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
++.|++|+|||+.++++..++. +|...+. .++|+|+++ +|++|+.|++|+|||
T Consensus 301 gS~DgTIkIWDl~tGk~l~tL~---------gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd 354 (356)
T 2w18_A 301 ILTSGTIAIWDLLLGQCTALLP---------PVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYH 354 (356)
T ss_dssp EETTSCEEEEETTTCSEEEEEC---------CC--CCCCEEEECSSSS-EEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEec---------CCCCCeEEEEEECCCCC-EEEEEECCCcEEEec
Confidence 9999999999999999888753 6666554 689999987 899999999999998
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.3e-21 Score=222.72 Aligned_cols=259 Identities=12% Similarity=0.076 Sum_probs=200.5
Q ss_pred ceEEEEecc--CcccccceeeeeEeecCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEecCc
Q 002407 430 RVRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSL--------------DGRYLASAGED------CVIHVWQVVE 487 (927)
Q Consensus 430 ~~~V~i~~~--~s~~l~~l~~~q~L~gH~~~I~~vafSp--------------dG~~LaSgs~D------gtVrVWdv~~ 487 (927)
+.+|++|+. .+++ ....+.+.+|...+..+++++ .+..|+.++.+ +.|++||+..
T Consensus 92 ~~~i~lwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g 168 (415)
T 2hqs_A 92 NVAYQLVDTGGAPGT---VLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG 168 (415)
T ss_dssp EEEEEEEECSSSTTC---EEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred EEEEEEEeCCCCCCC---EEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence 348999998 6654 223356789999999888875 26677776654 7999999753
Q ss_pred CcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC
Q 002407 488 SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL 567 (927)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~ 567 (927)
.. ...+.+|.
T Consensus 169 ~~----------------------------------------------------------------------~~~l~~~~ 178 (415)
T 2hqs_A 169 YN----------------------------------------------------------------------QFVVHRSP 178 (415)
T ss_dssp CS----------------------------------------------------------------------CEEEEEES
T ss_pred CC----------------------------------------------------------------------CEEEeCCC
Confidence 21 22345688
Q ss_pred CCEEEEEecCC-cEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCc--EEEEeCCCC
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDK---TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAK--VRIWSIPER 640 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~Dg---tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~--I~IWDl~t~ 640 (927)
..|.+++|+|+ .+|++++.++ .|++||+.++++.....|...+.+++|+| ++++|+ +++.++. |++||+.++
T Consensus 179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~ 257 (415)
T 2hqs_A 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASG 257 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC
T ss_pred CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCC
Confidence 89999999999 6799998885 99999999999887667889999999999 998777 6666655 999999999
Q ss_pred cEEEeccCCCcEEEEEECCCCCEEEEEECC-C--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 641 QVVDWNDLHEMVTAACYTPDGQGALVGSYK-G--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~spdg~~l~tgs~D-g--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
++.....+...+.+++|+|||++|++++.+ + .|++||+.+++.... ..+...+.+++|+|+++ +|+
T Consensus 258 ~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l----------~~~~~~~~~~~~spdG~-~l~ 326 (415)
T 2hqs_A 258 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI----------TWEGSQNQDADVSSDGK-FMV 326 (415)
T ss_dssp CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC----------CCSSSEEEEEEECTTSS-EEE
T ss_pred CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEE----------ecCCCcccCeEECCCCC-EEE
Confidence 887777788899999999999999988864 4 688889988764321 24556788999999998 565
Q ss_pred EEECC---CcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC---cEEEEECCCC
Q 002407 718 VTSAD---SRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS---YVYVWKYEAE 775 (927)
Q Consensus 718 sgs~D---g~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg---~I~IWdl~s~ 775 (927)
+++.+ ..|++||........ ...+ ..+..++|+|+|++|++++.++ .|++||+...
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred EEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 55543 589999975433321 2222 3788999999999999998877 7999998753
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.89 E-value=6.8e-21 Score=226.51 Aligned_cols=314 Identities=16% Similarity=0.119 Sum_probs=228.3
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec--CcCcccceeeccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNGSIWSIKFSLDGRYLASAGEDCVIHVWQV--VESERKGELLEKQ 498 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~-gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv--~~~~~~~~l~~~~ 498 (927)
.+++++..+++|.+|+..++++. +++. +|. +.+++|+|||++|++++.|++|++||+ .+++.+.++.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~-----~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--- 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIV-----KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--- 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEE-----EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE---
T ss_pred EEEEEEcCCCeEEEEECCCceEE-----EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe---
Confidence 35567778899999998776653 4455 443 899999999999999999999999999 7776655543
Q ss_pred ccCccccEEEEccCC----CCCeeccccc-CCceeeecccccccccccccCcccccceEeecCCCceEEEcc--------
Q 002407 499 EDGHLNMLLLANGSP----EPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG-------- 565 (927)
Q Consensus 499 ~~~~~~~v~~v~~sp----d~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g-------- 565 (927)
.......++++| ++.+++++.. ++.+..+.. .+.+++..+..
T Consensus 220 ---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~----------------------~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 220 ---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG----------------------ETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp ---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET----------------------TTCCEEEEEECCEECSSSC
T ss_pred ---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEec----------------------cccccceeecccCcccCcc
Confidence 123467889999 9998877753 454432211 12233444332
Q ss_pred --CCC-CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeC
Q 002407 566 --HLD-DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLK--IFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSI 637 (927)
Q Consensus 566 --H~~-~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~--~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl 637 (927)
|.. .+..+.++++ ..+++...+++|.+||+.+.+.+. .+.+...+..+.|+| ++++|++++ .+++|.+||+
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEET
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECC-CCCEEEEEecCCCeEEEEEC
Confidence 333 7899999997 456777889999999998876544 556777899999999 999776655 5889999999
Q ss_pred CCCcEEEecc-----CCCcEEEEEECCC-CCEEEEEE-CCCeEEEEECCC-------CeeeeecccccccccccCCCCCe
Q 002407 638 PERQVVDWND-----LHEMVTAACYTPD-GQGALVGS-YKGSCHLYNTSE-------NKLQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 638 ~t~~~v~~~~-----~~~~V~sla~spd-g~~l~tgs-~Dg~I~IwDl~~-------~~~~~~~~i~~~~~~~~~h~~~V 703 (927)
.+++++..+. |......+ ++|+ +..++++. .+++|.+||+.+ .+.+..+ ..+...+
T Consensus 354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---------~~~g~~~ 423 (543)
T 1nir_A 354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL---------QGQGGGS 423 (543)
T ss_dssp TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE---------ECSCSCC
T ss_pred CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE---------EcCCCCc
Confidence 9999887554 32223333 4677 55566664 579999999988 5665554 3566778
Q ss_pred EEEEEcCCCCcEEEEEE-------CCCcEEEEECCcceEEEEe---------ecCCcceEEEEEecCCCEEEEEE-----
Q 002407 704 TGFQFAPGSSSEVLVTS-------ADSRIRVVDGIDLVHKFKG---------FRNTNSQISASLTANGRYVVSAS----- 762 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs-------~Dg~I~VwD~~~~~~~~~~---------~~~~~~v~sv~fspdg~~Lasgs----- 762 (927)
..++|+|+++ .|++++ .+++|.|||..+....+.. ..+...+..+.|+|+|++|+++.
T Consensus 424 ~~v~~~pdg~-~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~ 502 (543)
T 1nir_A 424 LFIKTHPKSS-HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 502 (543)
T ss_dssp CCEECCTTCC-EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTT
T ss_pred eEEEcCCCCC-cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCC
Confidence 8899999987 677766 2779999996543322121 23356788999999999998763
Q ss_pred CCCcEEEEECCCCCCccccc
Q 002407 763 EDSYVYVWKYEAESRPSRSK 782 (927)
Q Consensus 763 ~Dg~I~IWdl~s~~~~~~~~ 782 (927)
.|+.|.|||..+.+.....+
T Consensus 503 ~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 503 DSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SCCEEEEEETTTTEEEEEEC
T ss_pred CCCeEEEEECCCceEEEeec
Confidence 47999999999987655444
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.2e-19 Score=199.09 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=189.7
Q ss_pred EEccCceEEEEeccCc-ccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEecC--cCcccceeeccccc
Q 002407 425 FHGQERVRVRQYGKSC-KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED-CVIHVWQVV--ESERKGELLEKQED 500 (927)
Q Consensus 425 ~~g~~~~~V~i~~~~s-~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D-gtVrVWdv~--~~~~~~~l~~~~~~ 500 (927)
+++..++.|++|+... +.+. ..+. ..|...+.+++|+|+|++|++++.+ +.|++|++. ++...
T Consensus 9 ~~~~~~~~v~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~--------- 75 (343)
T 1ri6_A 9 IASPESQQIHVWNLNHEGALT---LTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT--------- 75 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEE---EEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------
T ss_pred EeCCCCCeEEEEEECCCCcEE---Eeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------
Confidence 4446788999998742 2222 1222 3578889999999999999999886 999999986 22110
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
.+..+..+. .+..++|+|+ .
T Consensus 76 ----------------------------------------------------------~~~~~~~~~-~~~~~~~s~dg~ 96 (343)
T 1ri6_A 76 ----------------------------------------------------------FAAESALPG-SLTHISTDHQGQ 96 (343)
T ss_dssp ----------------------------------------------------------EEEEEECSS-CCSEEEECTTSS
T ss_pred ----------------------------------------------------------eccccccCC-CCcEEEEcCCCC
Confidence 011122222 6778999999 5
Q ss_pred EEEEEeC-CCcEEEEeCC---CCcEEEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCC-CcEEE------ecc
Q 002407 580 HLLSSSM-DKTVRLWHLS---SKTCLKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPE-RQVVD------WND 647 (927)
Q Consensus 580 ~L~Sgs~-DgtV~lWDl~---t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t-~~~v~------~~~ 647 (927)
+|++++. ++.|++||+. ..+.+..+.....+.+++|+| ++++|++++ .++.|++||+.+ +++.. ...
T Consensus 97 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 97 FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred EEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 5666554 8899999994 444555555666799999999 888888777 899999999987 65532 222
Q ss_pred CCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC--CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 648 LHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
....+..++|+|+++++++++ .++.|.+|++.. +.......+.... ........+..++|+|++..++++...++.
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP-ENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC-TTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC-ccccccCCccceEECCCCCEEEEEecCCCE
Confidence 345788999999999876665 789999999954 4332111111000 001223467789999999855556668999
Q ss_pred EEEEECCc---ceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 725 IRVVDGID---LVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 725 I~VwD~~~---~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
|.+||... ....+........+..++|+|+|++|++++ .++.|.+|+++.
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999651 122222222233477899999999988887 689999997653
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=2.3e-19 Score=213.31 Aligned_cols=277 Identities=9% Similarity=0.071 Sum_probs=209.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccccccccc
Q 002407 464 FSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSL 543 (927)
Q Consensus 464 fSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~ 543 (927)
|+|++.++++++.|++|.+||..+++.+..+.. ++. +..+.++|++.+++++..++.+
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~----g~~--~~~v~~spdg~~l~v~~~d~~V---------------- 202 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT----GYA--VHISRMSASGRYLLVIGRDARI---------------- 202 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC----STT--EEEEEECTTSCEEEEEETTSEE----------------
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec----Ccc--cceEEECCCCCEEEEECCCCeE----------------
Confidence 889999999999999999999999887776531 222 6788999999999988777666
Q ss_pred CcccccceEeec---CCCceEEEccCCCCEEEEEecC----C-cEEEEEe-CCCcEEEEeCCCCcEEEEEec--------
Q 002407 544 DHMVVPETVFAL---SDKPICSFQGHLDDVLDLSWSK----S-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH-------- 606 (927)
Q Consensus 544 ~~~~~~~~v~~~---s~k~i~~l~gH~~~V~~l~~sp----d-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h-------- 606 (927)
.+|++ +.+.+.++. +...+..++|+| + ++|++++ .+++|.+||..++++++++..
T Consensus 203 -------~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~ 274 (543)
T 1nir_A 203 -------DMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQ 274 (543)
T ss_dssp -------EEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSC
T ss_pred -------EEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcc
Confidence 33444 345556666 445689999999 8 6777777 489999999999999988752
Q ss_pred ----CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE--eccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECC
Q 002407 607 ----SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD--WNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS 679 (927)
Q Consensus 607 ----~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~--~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~ 679 (927)
...+..+.++|.+..++++...++.|.+||+.+.+.+. ...+...+..++|+|+|++|++++ .+++|.+||+.
T Consensus 275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~ 354 (543)
T 1nir_A 275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK 354 (543)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence 22789999999445566777788999999998765432 445566788899999999877665 58899999999
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCc---------ceEEEEeecCCcceEEE
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDGID---------LVHKFKGFRNTNSQISA 749 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv 749 (927)
++++...+... ...|......+ ++|++..+++++. .|++|.|||... .+..+..+ ...+..+
T Consensus 355 tg~l~~~i~~g-----~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v 426 (543)
T 1nir_A 355 DRRLSALVDVG-----KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFI 426 (543)
T ss_dssp TTEEEEEEECS-----SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCE
T ss_pred CCeEEEeeccC-----CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEE
Confidence 99987765421 12354444444 5777554666665 689999999643 44555543 4456778
Q ss_pred EEecCCCEEEEEE-------CCCcEEEEECCCCCCc
Q 002407 750 SLTANGRYVVSAS-------EDSYVYVWKYEAESRP 778 (927)
Q Consensus 750 ~fspdg~~Lasgs-------~Dg~I~IWdl~s~~~~ 778 (927)
.|+|++++|++++ .+++|.|||+.+.+..
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 9999999999987 2779999999998765
No 132
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=4.9e-19 Score=226.50 Aligned_cols=279 Identities=12% Similarity=0.008 Sum_probs=209.7
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-CcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~-~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+.+.+|.+.|.++.|+++ .++++++.|++++||.+.. +.....+. .+. .+....|+|++..++... ++.+.
T Consensus 197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-----~~~-~~~~~~~SpDG~~la~~~-~~~i~ 268 (1045)
T 1k32_A 197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-----SFT-DYYPRHLNTDGRRILFSK-GGSIY 268 (1045)
T ss_dssp EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-----CCC-SSCEEEEEESSSCEEEEE-TTEEE
T ss_pred EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-----CCC-CcceeeEcCCCCEEEEEe-CCEEE
Confidence 445789999999999998 6777888899999998764 22222221 111 234458889998887763 33332
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEc-----------cCCCCEEEEEec-CC-cEEEEEeCCCcEEEEeC
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-----------GHLDDVLDLSWS-KS-QHLLSSSMDKTVRLWHL 595 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~-----------gH~~~V~~l~~s-pd-~~L~Sgs~DgtV~lWDl 595 (927)
.+. .....+..+. .|...+..++|+ |+ .+|++++ ++.|++|++
T Consensus 269 ~~d-----------------------~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 269 IFN-----------------------PDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp EEC-----------------------TTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred Eec-----------------------CCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 222 1112222222 255678999999 99 4577766 889999999
Q ss_pred CCCcEEEEEecCC-ceEEEEEccCCCCEEEEEECCCcEE-EEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeE
Q 002407 596 SSKTCLKIFSHSD-YVTCIQFNPVDDRYFISGSLDAKVR-IWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSC 673 (927)
Q Consensus 596 ~t~~~~~~~~h~~-~V~~v~fsp~dg~~L~sgs~Dg~I~-IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I 673 (927)
..++......|.. .+..++|+ +++.|++++.+..|. +|++.+++......+...+..++|+|||++|++++.++.|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v 402 (1045)
T 1k32_A 325 SGTYVLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 402 (1045)
T ss_dssp TSSBEEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCceEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeE
Confidence 9888766555777 89999999 788899888888888 9999988877766666789999999999999999999999
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC----------CcEEEEECCcceEEEEeecCC
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD----------SRIRVVDGIDLVHKFKGFRNT 743 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D----------g~I~VwD~~~~~~~~~~~~~~ 743 (927)
++||+.+++..... ..|...+.+++|+|++. +|++++.+ +.|++||..... ......+.
T Consensus 403 ~~~d~~tg~~~~~~---------~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 403 MTVDLETGKPTVIE---------RSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp EEEETTTCCEEEEE---------ECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred EEEECCCCceEEec---------cCCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 99999998766543 25777889999999998 56666554 489999976543 33333445
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..+..++|+|||++|++++.++...+|+..
T Consensus 472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp SBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred cccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 667889999999999999998888888754
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=6.5e-19 Score=202.22 Aligned_cols=235 Identities=12% Similarity=0.024 Sum_probs=183.9
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCC---cEEEEecCcCcccceeecccccCccccEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDC---VIHVWQVVESERKGELLEKQEDGHLNMLL 507 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~Dg---tVrVWdv~~~~~~~~l~~~~~~~~~~~v~ 507 (927)
+.|++|+...+. .+.|.+|.+.|.+++|+|||++||+++.|+ .|++||+.+++..
T Consensus 159 ~~i~i~d~~g~~------~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------------- 216 (415)
T 2hqs_A 159 YELRVSDYDGYN------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------------- 216 (415)
T ss_dssp EEEEEEETTSCS------CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----------------
T ss_pred ceEEEEcCCCCC------CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----------------
Confidence 799999976443 255678999999999999999999999885 9999998765421
Q ss_pred EEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEE-EEe
Q 002407 508 LANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLL-SSS 585 (927)
Q Consensus 508 ~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~-Sgs 585 (927)
.+..|...+.+++|+|+ .+|+ +++
T Consensus 217 ------------------------------------------------------~l~~~~~~~~~~~~spdg~~la~~~~ 242 (415)
T 2hqs_A 217 ------------------------------------------------------QVASFPRHNGAPAFSPDGSKLAFALS 242 (415)
T ss_dssp ------------------------------------------------------EEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred ------------------------------------------------------EeecCCCcccCEEEcCCCCEEEEEEe
Confidence 22346678999999999 4566 666
Q ss_pred CCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEEC-CC--cEEEEeCCCCcEEEeccCCCcEEEEEECCC
Q 002407 586 MDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSL-DA--KVRIWSIPERQVVDWNDLHEMVTAACYTPD 660 (927)
Q Consensus 586 ~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg--~I~IWDl~t~~~v~~~~~~~~V~sla~spd 660 (927)
.++. |++||+.+++......|...+.+++|+| ++++|++++. ++ .|.+||+.+++......+...+..++|+|+
T Consensus 243 ~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 243 KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 321 (415)
T ss_dssp TTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTT
T ss_pred cCCCceEEEEECCCCCEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCC
Confidence 6655 9999999988866556888999999999 9998888886 44 688889998887666666678999999999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC---cEEEEECCc-c
Q 002407 661 GQGALVGSYK---GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS---RIRVVDGID-L 733 (927)
Q Consensus 661 g~~l~tgs~D---g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg---~I~VwD~~~-~ 733 (927)
|++|++++.+ ..|++||+.+++.... ..+. .+.+++|+|++. .|++++.++ .|++||... .
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~~~~l----------~~~~-~~~~~~~spdg~-~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGGVQVL----------SSTF-LDETPSLAPNGT-MVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCCEEEC----------CCSS-SCEEEEECTTSS-EEEEEEEETTEEEEEEEETTSCC
T ss_pred CCEEEEEECcCCceEEEEEECCCCCEEEe----------cCCC-CcCCeEEcCCCC-EEEEEEcCCCccEEEEEECCCCc
Confidence 9999988764 5899999998876432 1332 799999999997 666666665 799999643 2
Q ss_pred eEEEEeecCCcceEEEEEecCCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
...+ ..+...|.+++|+|.-.
T Consensus 390 ~~~l--~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 390 KARL--PATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEC--CCSSSEEEEEEECCCCC
T ss_pred EEEe--eCCCCCCcCCccccccc
Confidence 3333 34567899999999653
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=5.2e-19 Score=194.28 Aligned_cols=271 Identities=11% Similarity=0.087 Sum_probs=192.0
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeeccc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
...++++...++.|.+|+..++++... +..+...+ +++|+|+|++|++++. ++.|.+||+.+++..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~------- 75 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQ-----ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK------- 75 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEE-----EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-------
T ss_pred CCEEEEEecCCCeEEEEeCcccceeee-----EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-------
Confidence 344466777889999999887766433 34556667 9999999997777665 889999998765431
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
...+..+..++.+++|+|+
T Consensus 76 -------------------------------------------------------------~~~~~~~~~~~~~~~~s~d 94 (331)
T 3u4y_A 76 -------------------------------------------------------------VVAIQEGQSSMADVDITPD 94 (331)
T ss_dssp -------------------------------------------------------------EEEEEECSSCCCCEEECTT
T ss_pred -------------------------------------------------------------EEecccCCCCccceEECCC
Confidence 1112234444445899999
Q ss_pred -cEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEE-EEEECCCc-EEEEeCCCCcEE-----Eecc
Q 002407 579 -QHLLSSSMDK---TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYF-ISGSLDAK-VRIWSIPERQVV-----DWND 647 (927)
Q Consensus 579 -~~L~Sgs~Dg---tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L-~sgs~Dg~-I~IWDl~t~~~v-----~~~~ 647 (927)
.+|+++..++ .|++||+.+++.+..+.+...+.+++|+| ++++| ++...++. |.+|++.....+ ....
T Consensus 95 g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 173 (331)
T 3u4y_A 95 DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS 173 (331)
T ss_dssp SSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred CCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence 5566444442 89999999999999888777789999999 88754 45566688 999998753322 2334
Q ss_pred CCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCee---eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 648 LHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
....+..++|+|+|+++++++ .++.|.+||+.+++. ...+ .....+..++|+|+++.++++...++
T Consensus 174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV----------GTNNLPGTIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE----------ECSSCCCCEEECTTSSEEEEECSSEE
T ss_pred CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec----------cCCCCCceEEECCCCCEEEEEEcCCC
Confidence 456789999999999766655 588999999998876 4332 23356788999999985455555688
Q ss_pred cEEEEECCcceE----EEEee--cCCcc---eEEEEEecCCCEEEEEEC-CCcEEEEECCCC
Q 002407 724 RIRVVDGIDLVH----KFKGF--RNTNS---QISASLTANGRYVVSASE-DSYVYVWKYEAE 775 (927)
Q Consensus 724 ~I~VwD~~~~~~----~~~~~--~~~~~---v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~ 775 (927)
.|.+||...... .+... ..... ...++|+|||++|++++. ++.|+|||+...
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 899999654322 11111 01111 235799999998876655 568999999763
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=1.1e-19 Score=223.04 Aligned_cols=312 Identities=11% Similarity=0.026 Sum_probs=214.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEecCcCcccceeeccccc----------Cc---------cccEEEEc
Q 002407 456 NGSIWSIKFSLDGRYLASAGE-DC-----VIHVWQVVESERKGELLEKQED----------GH---------LNMLLLAN 510 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~-Dg-----tVrVWdv~~~~~~~~l~~~~~~----------~~---------~~~v~~v~ 510 (927)
...|.+++|||||++||+++. |+ .|++||+.+++....+...... .. ...+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999988754443211100 00 02366789
Q ss_pred cCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCC---ceEEEccCCCCEEEEEecCC-cEEEEEeC
Q 002407 511 GSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK---PICSFQGHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 511 ~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k---~i~~l~gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
|+||+..++.+.. +.+ .+|++... .+..+..|...+..++|+|| .+|+.++
T Consensus 116 ~SpDg~~l~~~~~-~~i-----------------------~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~- 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GEL-----------------------YLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR- 170 (741)
T ss_dssp ECTTSSEEEEEET-TEE-----------------------EEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-
T ss_pred ECCCCCEEEEEeC-CcE-----------------------EEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-
Confidence 9999998887654 332 34555544 55667788889999999999 5566666
Q ss_pred CCcEEEEeCCCCcEEEEEe-cCCc----------------eEEEEEccCCCCEEEEEECCC-------------------
Q 002407 587 DKTVRLWHLSSKTCLKIFS-HSDY----------------VTCIQFNPVDDRYFISGSLDA------------------- 630 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~-h~~~----------------V~~v~fsp~dg~~L~sgs~Dg------------------- 630 (927)
++.|++||+.+++...... +... +..++|+| ++++|++++.|+
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 5699999999988766554 2222 47899999 999999988765
Q ss_pred --------------cEEEEeCCC-CcEEEec---cCCCcEEEEEECCCCCEEEEEEC-----CCeEEEEECCCCeeeeec
Q 002407 631 --------------KVRIWSIPE-RQVVDWN---DLHEMVTAACYTPDGQGALVGSY-----KGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 631 --------------~I~IWDl~t-~~~v~~~---~~~~~V~sla~spdg~~l~tgs~-----Dg~I~IwDl~~~~~~~~~ 687 (927)
.|.+||+.+ ++..... .+...+..++| |||++|+++.. +..|++||+.+++.....
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 789999998 8766544 35568999999 99999998764 567999999998766543
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEE-EEecCCCEEEEE-EC
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISA-SLTANGRYVVSA-SE 763 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv-~fspdg~~Lasg-s~ 763 (927)
.... ......+..++|+|+++ ++++++.++.++||... .....+ ..+...+..+ .|+|+|++|+.. +.
T Consensus 329 ~~~~-----~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~~~~l--~~~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 329 HETS-----PTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGKAAAL--THGNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp EEEC-----SSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSCEEES--CCSSSCEEEEEEEETTTTEEEEEECS
T ss_pred EcCC-----CCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCCeeee--eecceEEEeEeEEeCCCCEEEEEEeC
Confidence 2100 01111456789999998 88888899987777632 222222 2334557676 599999987654 44
Q ss_pred CC--cEEEEECCC-CCCcccccccceeeeeeeecCCCeEEEEe
Q 002407 764 DS--YVYVWKYEA-ESRPSRSKSITVTHSYEHFHCQDVSVAIP 803 (927)
Q Consensus 764 Dg--~I~IWdl~s-~~~~~~~~~~~~~~~~~~~~~~~v~vavs 803 (927)
++ .++||++.. +..+..+.. ........|++++..+++.
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDS 442 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEE
T ss_pred CCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEE
Confidence 55 899999865 332333322 1112234566665555543
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=4.6e-19 Score=189.14 Aligned_cols=251 Identities=14% Similarity=0.133 Sum_probs=183.3
Q ss_pred ccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCc-CcccceeecccccCcccc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVE-SERKGELLEKQEDGHLNM 505 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~-~~~~~~l~~~~~~~~~~~ 505 (927)
+..+++|++|+..+++.. .+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++....
T Consensus 18 ~~~~~~i~~~d~~~~~~~------~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~------------ 78 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR------VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV------------ 78 (297)
T ss_dssp CCCCEEEEEEETTTTEEE------EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC------------
T ss_pred CCcceeEEEEeCCCCcee------eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe------------
Confidence 456889999998877653 3456899999999999999999987 88999999876 432111
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccC-CCCEEEEEecCC-cEEEE
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGH-LDDVLDLSWSKS-QHLLS 583 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH-~~~V~~l~~spd-~~L~S 583 (927)
+.+| ...|.+++|+|+ .+|++
T Consensus 79 ---------------------------------------------------------~~~~~~~~~~~~~~spdg~~l~~ 101 (297)
T 2ojh_A 79 ---------------------------------------------------------DTGFATICNNDHGISPDGALYAI 101 (297)
T ss_dssp ---------------------------------------------------------CCTTCCCBCSCCEECTTSSEEEE
T ss_pred ---------------------------------------------------------ccccccccccceEECCCCCEEEE
Confidence 0112 356778899999 67888
Q ss_pred Ee--CCCc--EEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCcEEEEeC--CCCcEEEeccCCCcEEEEE
Q 002407 584 SS--MDKT--VRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSI--PERQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 584 gs--~Dgt--V~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWDl--~t~~~v~~~~~~~~V~sla 656 (927)
++ .++. |.+|++.+++ ...+.+...+..++|+| ++++|+ ++..++.++||++ .+++......+...+.+++
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (297)
T 2ojh_A 102 SDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPD 179 (297)
T ss_dssp EECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred EEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccce
Confidence 87 3344 4455555555 34445455699999999 888776 7888999999984 5667767777778999999
Q ss_pred ECCCCCEEEEEE-CCCeEEEEECC-CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----------C
Q 002407 657 YTPDGQGALVGS-YKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----------S 723 (927)
Q Consensus 657 ~spdg~~l~tgs-~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----------g 723 (927)
|+|++++|++++ .++.+.||++. .+.....+ ..+...+..++|+|++. +|++++.+ .
T Consensus 180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---------TDSAYGDWFPHPSPSGD-KVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---------CCCSEEEEEEEECTTSS-EEEEEEEETTCCSCCSSEEE
T ss_pred ECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---------ecCCcccCCeEECCCCC-EEEEEEcCCCCCcccccCce
Confidence 999999888776 48889999875 33333222 24567789999999988 56666554 5
Q ss_pred cEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 724 RIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 724 ~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
.|++||... .........+...+..++|+|++++|++++.+.
T Consensus 250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 699999643 333333334566788899999999999887654
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.83 E-value=4e-19 Score=218.03 Aligned_cols=294 Identities=12% Similarity=0.086 Sum_probs=205.9
Q ss_pred EEEEeccCcccccceeeeeEeecCC------------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHN------------------------GSIWSIKFSLDGRYLASAGEDCVIHVWQVVE 487 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~------------------------~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~ 487 (927)
.|++|+..+++...+. ..|. ..|.+++|||||++|++++. +.|++||+.+
T Consensus 65 ~i~~~d~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~ 138 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLV-----DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQ 138 (741)
T ss_dssp EEEEEETTTCCEEEEE-----CGGGTC--------------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSS
T ss_pred EEEEEECCCCceeEcc-----chhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCC
Confidence 8999998877654433 2222 34889999999999999986 9999999988
Q ss_pred Cc--ccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE-c
Q 002407 488 SE--RKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-Q 564 (927)
Q Consensus 488 ~~--~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-~ 564 (927)
+. ....+ ..+...+..+.|+|++..++..... .+. ++++.......+ .
T Consensus 139 ~~~~~~~~l-----~~~~~~~~~~~~SPDG~~la~~~~~-~i~-----------------------~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 139 EGKAAVRQL-----THGEGFATDAKLSPKGGFVSFIRGR-NLW-----------------------VIDLASGRQMQLTA 189 (741)
T ss_dssp CSTTSCCBC-----CCSSSCEEEEEECTTSSEEEEEETT-EEE-----------------------EEETTTTEEEECCC
T ss_pred CCcceEEEc-----ccCCcccccccCCCCCCEEEEEeCC-cEE-----------------------EEecCCCCEEEecc
Confidence 72 22222 2334568899999999988877543 332 222222222221 1
Q ss_pred cCCC----------------CEEEEEecCC-cEEEEEeCCC---------------------------------cEEEEe
Q 002407 565 GHLD----------------DVLDLSWSKS-QHLLSSSMDK---------------------------------TVRLWH 594 (927)
Q Consensus 565 gH~~----------------~V~~l~~spd-~~L~Sgs~Dg---------------------------------tV~lWD 594 (927)
.+.. .+..++|+|| .+|++++.|+ .|++||
T Consensus 190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2222 2478999999 6688887765 799999
Q ss_pred CCC-CcEEEEE---ecCCceEEEEEccCCCCEEEEEEC-----CCcEEEEeCCCCcEEEeccCCC-----cEEEEEECCC
Q 002407 595 LSS-KTCLKIF---SHSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPERQVVDWNDLHE-----MVTAACYTPD 660 (927)
Q Consensus 595 l~t-~~~~~~~---~h~~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~t~~~v~~~~~~~-----~V~sla~spd 660 (927)
+.+ ++..... .|...+..++| | ++++|++++. +..|++||+.+++.......+. .+..++|+||
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 270 PAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp SSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred CCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 998 8776554 36788999999 9 9998887764 5679999999988766544332 3468899999
Q ss_pred CCEEEEEECCCeEEEEECC-CCeeeeecccccccccccCCCCCeEEE-EEcCCCCcEEEEEECCC--cEEEEECC---cc
Q 002407 661 GQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITGF-QFAPGSSSEVLVTSADS--RIRVVDGI---DL 733 (927)
Q Consensus 661 g~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl-~fspdg~~~Llsgs~Dg--~I~VwD~~---~~ 733 (927)
|++++++..+|.++||.+. .+. ...+ ..+...|..+ .|+|++..++++++.++ .++||+.. ..
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l---------~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~ 417 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAAL---------THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQ 417 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEES---------CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCC
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeee---------eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCC
Confidence 9999999999987787765 233 2222 3556678787 59999985555666666 89999842 22
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEECC----CcEEEEECCCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSASED----SYVYVWKYEAE 775 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D----g~I~IWdl~s~ 775 (927)
...+.. ...+..++|+|||++|+....+ ..+++|+....
T Consensus 418 ~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 418 PQRLSK---APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CEECCC---SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eeeccc---CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 333332 4457799999999998876543 46899987543
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.82 E-value=5.1e-19 Score=193.64 Aligned_cols=272 Identities=10% Similarity=0.059 Sum_probs=195.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEee-cCCC-CEEEEEEcCCCCEEE-EEeCCCcEEEEecCcCcccceeecccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQ-AHNG-SIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~-gH~~-~I~~vafSpdG~~La-Sgs~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
+++++..++.|.+|+..+++.... +. ++.. .+..++|+|+|++|+ ++..++.|.+||+.+++....+....
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~- 76 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKV-----ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST- 76 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE-----EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-
T ss_pred EEEEcCCCCeEEEEECCCCcEEEE-----EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-
Confidence 567788889999999877654332 22 2322 488999999998764 55568899999998765443321000
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
. ..|...+..++|+|+
T Consensus 77 ----------------------------------------------------------~-----~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 77 ----------------------------------------------------------P-----EERVKSLFGAALSPDG 93 (337)
T ss_dssp ----------------------------------------------------------T-----TEEEECTTCEEECTTS
T ss_pred ----------------------------------------------------------c-----ccccccccceEECCCC
Confidence 0 001123456889998
Q ss_pred cEEEEEe------------CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 579 QHLLSSS------------MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs------------~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
.+|+++. .++.|.+||+.+++.+..+.....+.+++|+| ++++|+++ ++.|.+||+.+++++...
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~ 170 (337)
T 1pby_B 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDK 170 (337)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEE
T ss_pred CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeee
Confidence 4777775 67999999999999888888777789999999 88888877 688999999999887655
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCC------------------------eEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKG------------------------SCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg------------------------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
........+.|+|+++.+++....+ .|.+||+.+++.. ...+ ..+...
T Consensus 171 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-------~~~~~~ 242 (337)
T 1pby_B 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-------RIMDVF 242 (337)
T ss_dssp CSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-------EECSSC
T ss_pred eccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-------CCCCCc
Confidence 4433122347899998776554332 4689999988765 3221 245567
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+.+++|+|++. +++++ ++.|++||........... ....+..++|+|+|++|++++.++.|++||+.+++..
T Consensus 243 ~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 243 YFSTAVNPAKT-RAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEECTTSS-EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eeeEEECCCCC-EEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 88999999987 55555 7999999976543322221 2345678999999999999999999999999886543
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.81 E-value=1.8e-18 Score=211.24 Aligned_cols=308 Identities=13% Similarity=0.114 Sum_probs=199.6
Q ss_pred CceEEEEeccCcccc--cceeeeeEe-----------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee
Q 002407 429 ERVRVRQYGKSCKDL--TALYKCQEI-----------QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l--~~l~~~q~L-----------~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~ 495 (927)
.++ | +|+..+++. ..++....+ ..+...|.+++|+|| ++|+.+. ++.|++||+.+++.....
T Consensus 43 ~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~- 117 (706)
T 2z3z_A 43 GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF- 117 (706)
T ss_dssp TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-
T ss_pred CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-
Confidence 344 7 999887776 444321111 011256999999999 6666554 699999999887543322
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc-----------
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----------- 564 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~----------- 564 (927)
.+...+..+.|+|++..++.. .++.+..+...... . ..++......
T Consensus 118 -----~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~--------~---------~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 118 -----DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLG--------E---------GMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp -----CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTT--------S---------CCCCCEESCSCCBTTEEESSC
T ss_pred -----CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccc--------c---------cCCCcEEeccCCCCCeEcccc
Confidence 122345567899999988885 44444333221100 0 0011111111
Q ss_pred ---cCCCCEEEEEecCC-cEEEEEe---------------------------------CCCcEEEEeCCCCcEEEEE---
Q 002407 565 ---GHLDDVLDLSWSKS-QHLLSSS---------------------------------MDKTVRLWHLSSKTCLKIF--- 604 (927)
Q Consensus 565 ---gH~~~V~~l~~spd-~~L~Sgs---------------------------------~DgtV~lWDl~t~~~~~~~--- 604 (927)
.+...+.++.|+|| .+|++++ .+..|++||+.+++.....
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 22233688999999 6788877 4467999999998876655
Q ss_pred ecCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCC-cEEEecc--CCC---cEEEEEECC--CCCEEEEEECCC
Q 002407 605 SHSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPER-QVVDWND--LHE---MVTAACYTP--DGQGALVGSYKG 671 (927)
Q Consensus 605 ~h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~-~~v~~~~--~~~---~V~sla~sp--dg~~l~tgs~Dg 671 (927)
.|...+.+++|+| ++++|++++.++ .|++||+.++ ....... ... .+..++|+| +|++++++..++
T Consensus 255 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 255 PKEKFLTNLSWSP-DENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp CTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 3667899999999 999999887775 8999999998 4433321 121 246789999 999999999999
Q ss_pred eEEEEECC-CCeeeeecccccccccccCCCCCeEE-EEEcCCCCcEEEEEECCC----cEEEEECCcceEEEEeecCCcc
Q 002407 672 SCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSADS----RIRVVDGIDLVHKFKGFRNTNS 745 (927)
Q Consensus 672 ~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vts-l~fspdg~~~Llsgs~Dg----~I~VwD~~~~~~~~~~~~~~~~ 745 (927)
.++||.+. ++.....+ ..+...+.. ++|+|++..+++++..++ .|..||...... ....+...
T Consensus 334 ~~~l~~~~~~~~~~~~l---------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~ 402 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQV---------TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--KDLTPESG 402 (706)
T ss_dssp SCEEEEEETTSCEEEEC---------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--EESCCSSS
T ss_pred ccEEEEEECCCCEEEec---------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--eeccCCCc
Confidence 99998876 44433332 245566776 799999985555555555 666677543221 11224556
Q ss_pred eEEEEEecCCCEEEEEECC----CcEEEEECCCCC
Q 002407 746 QISASLTANGRYVVSASED----SYVYVWKYEAES 776 (927)
Q Consensus 746 v~sv~fspdg~~Lasgs~D----g~I~IWdl~s~~ 776 (927)
+..++|+|||++|+....+ +.|++||+.++.
T Consensus 403 ~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 8899999999998877544 459999998764
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=1.5e-17 Score=184.57 Aligned_cols=269 Identities=12% Similarity=0.115 Sum_probs=178.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEecCcCcccceeecccccCccccEEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE---DCVIHVWQVVESERKGELLEKQEDGHLNMLLL 508 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~ 508 (927)
.|..|+..++++..+ .+..+...+..|+|+|||+ |++++. ++.|++|++.++...
T Consensus 19 ~v~~~d~~tg~~~~~----~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~----------------- 76 (347)
T 3hfq_A 19 YQGTLDTTAKTLTND----GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH----------------- 76 (347)
T ss_dssp EEEEEETTTTEEEEE----EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----------------
T ss_pred EEEEEcCCCCeEEEe----eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----------------
Confidence 344444444544332 2234567788899999999 555544 689999998544310
Q ss_pred EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEe-C
Q 002407 509 ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-M 586 (927)
Q Consensus 509 v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs-~ 586 (927)
.+..+..+...+..++|+|+ .+|++++ .
T Consensus 77 --------------------------------------------------~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 77 --------------------------------------------------KLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp --------------------------------------------------EEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred --------------------------------------------------EeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 11122335566788999999 5677777 6
Q ss_pred CCcEEEEeCCC-Cc--EEEEEecC----------CceEEEEEccCCCCEEEEEECCCcEEEEeCC-CCcEEEe----ccC
Q 002407 587 DKTVRLWHLSS-KT--CLKIFSHS----------DYVTCIQFNPVDDRYFISGSLDAKVRIWSIP-ERQVVDW----NDL 648 (927)
Q Consensus 587 DgtV~lWDl~t-~~--~~~~~~h~----------~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~-t~~~v~~----~~~ 648 (927)
+++|.+|++.. +. .+..+.+. ..+.+++|+| +++++++...++.|.+|++. ++++... ...
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 185 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA 185 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC
Confidence 89999999963 33 33333322 2488999999 88866666678899999998 5654321 222
Q ss_pred CCcEEEEEECCCCCEEEEE-ECCCeEEEEECCC--CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcE
Q 002407 649 HEMVTAACYTPDGQGALVG-SYKGSCHLYNTSE--NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRI 725 (927)
Q Consensus 649 ~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~--~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I 725 (927)
...+..++|+|||++++++ ..++.|.+|++.. ++......+..... .......+..++|+|+++.++++...++.|
T Consensus 186 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 186 GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-DYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-TCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-CCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 3468889999999976664 5678999999874 54432211111000 001124588999999998555677789999
Q ss_pred EEEECC---cceEEEEeecCCcceEEEEEecCCCEEEEEECC-CcEEEEECCC
Q 002407 726 RVVDGI---DLVHKFKGFRNTNSQISASLTANGRYVVSASED-SYVYVWKYEA 774 (927)
Q Consensus 726 ~VwD~~---~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-g~I~IWdl~s 774 (927)
.+|+.. ..........+...+..++|+|||++|++++.+ +.|.+|+++.
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 999964 222222222234457789999999999888765 8899997653
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=2e-17 Score=181.53 Aligned_cols=276 Identities=11% Similarity=0.062 Sum_probs=184.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCCCCcE-EEeccCCCcEEE-
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIPERQV-VDWNDLHEMVTA- 654 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~t~~~-v~~~~~~~~V~s- 654 (927)
..+++.+.++.|++||+.+++.+..+. +...+ .++|+| ++++|++++. ++.|.+||+.++++ ............
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 347788889999999999999988777 45556 999999 8887666665 88999999999886 555555555555
Q ss_pred EEECCCCCEEEEEECCC---eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc-EEEEEC
Q 002407 655 ACYTPDGQGALVGSYKG---SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR-IRVVDG 730 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg---~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~-I~VwD~ 730 (927)
++|+|+|++|+++..++ .|.+||+.+++....+. ......+++|+|+++.++++...++. |.+|+.
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------CCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 99999999999665553 89999999988766532 33456899999999866666677788 999995
Q ss_pred Cc---ceEE-EEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecC
Q 002407 731 ID---LVHK-FKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWP 805 (927)
Q Consensus 731 ~~---~~~~-~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~ 805 (927)
.. .... ............++|+|+|++|+.++ .++.|++||+.++...... .. +..
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~------~~------------~~~- 219 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLL------NA------------VGT- 219 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEE------EE------------EEC-
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccccee------ee------------ccC-
Confidence 42 2111 12223345578999999999765555 6889999999865431000 00 000
Q ss_pred CceeEEeecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEeccccccCccccccCchhhccc--c--c
Q 002407 806 GVGDTWGLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSATNSYFFDRISATWPEEKLVLT--A--R 881 (927)
Q Consensus 806 g~~~i~~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas~~~~~d~~v~~W~~e~l~~~--~--~ 881 (927)
+ .....++|+|+|++|+.+. ..+..+.+|+.+..... . .
T Consensus 220 --------------------~--------------~~~~~~~~spdg~~l~v~~---~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 220 --------------------N--------------NLPGTIVVSRDGSTVYVLT---ESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp --------------------S--------------SCCCCEEECTTSSEEEEEC---SSEEEEEEEETTTTEEEEEEEEE
T ss_pred --------------------C--------------CCCceEEECCCCCEEEEEE---cCCCEEEEEECCCCceeeecccc
Confidence 0 0012245899999877654 23455777876533220 0 0
Q ss_pred cCCCceecccCCCCCcccCCCCCEEE-EEcCCCcEEEeecCC
Q 002407 882 NRSPRTSLDISNGISSSISAWGMVIV-TAGLRGEIRAYQNFG 922 (927)
Q Consensus 882 ~~s~v~s~~~~~~~~~a~S~dG~vLv-Tgs~DG~IrvW~~~g 922 (927)
...............++|+|||++|+ ++..++.|++|+.-+
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 00000000000001469999999875 555678999999544
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.80 E-value=1.2e-18 Score=212.93 Aligned_cols=319 Identities=8% Similarity=0.032 Sum_probs=207.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
.+.+++|+|||+++++ +.||+|++||+.+++....+... ......+..++|+||+..++.+..+.........
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~---- 90 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGK--KIESLRAIRYEISPDREYALFSYNVEPIYQHSYT---- 90 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTT--TTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCC----
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccc--cccccccceEEECCCCCEEEEEecCccceeecce----
Confidence 4678999999998877 78999999999988765443211 1111247789999999998887554322100000
Q ss_pred ccccccCcccccceEeecCCCceEEEc---cCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCce--
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQ---GHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYV-- 610 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~---gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V-- 610 (927)
....+|++.......+. +|...+..++|+|+ ..|+.++. +.|++||+.+++...... +...+
T Consensus 91 ----------~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 91 ----------GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp ----------SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred ----------eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceE
Confidence 01134554443333333 45556889999999 56777775 899999999988877665 33333
Q ss_pred ----------------EEEEEccCCCCEEEEEECCC----------------------------------cEEEEeCCCC
Q 002407 611 ----------------TCIQFNPVDDRYFISGSLDA----------------------------------KVRIWSIPER 640 (927)
Q Consensus 611 ----------------~~v~fsp~dg~~L~sgs~Dg----------------------------------~I~IWDl~t~ 640 (927)
.+++|+| ++++|++++.|+ .|++||+.++
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 7899999 999999887653 7999999988
Q ss_pred cE-EEeccC------CCcEEEEEECCCCCEEEEEECC----CeEEEEECCCCeeeeecccccccccccCCCCCe----EE
Q 002407 641 QV-VDWNDL------HEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKI----TG 705 (927)
Q Consensus 641 ~~-v~~~~~------~~~V~sla~spdg~~l~tgs~D----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~V----ts 705 (927)
+. ..+..+ ...+..++|+|||++|++.... ..|++||+.+++....... .+...+ ..
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~ 310 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--------ESEAWLHRQNEE 310 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------ECSSCCCCCCCC
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------ccCCEEeccCCC
Confidence 75 333322 4578999999999988776543 5799999998876544321 122222 36
Q ss_pred EEEcCCCCcEEEE-EECCC------cEEEEE-CCc-c---eEEEEeecCCcceEE-EEEecCCCEEEEEECC---CcEEE
Q 002407 706 FQFAPGSSSEVLV-TSADS------RIRVVD-GID-L---VHKFKGFRNTNSQIS-ASLTANGRYVVSASED---SYVYV 769 (927)
Q Consensus 706 l~fspdg~~~Lls-gs~Dg------~I~VwD-~~~-~---~~~~~~~~~~~~v~s-v~fspdg~~Lasgs~D---g~I~I 769 (927)
++|+|+|+.++++ +..++ .|.+|| ... . ...+. .....+.. ++|+|||++|+..+.+ +.++|
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 7999999865555 55677 577787 222 1 22222 12233444 6899999999877655 78999
Q ss_pred EECCCCC--Ccccccc---cceeeeeeeecCCCeEEEEecC
Q 002407 770 WKYEAES--RPSRSKS---ITVTHSYEHFHCQDVSVAIPWP 805 (927)
Q Consensus 770 Wdl~s~~--~~~~~~~---~~~~~~~~~~~~~~v~vavs~~ 805 (927)
|++.... ....... .........|.+++..+++...
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 9987543 1222211 1111233456666665565443
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=2.4e-17 Score=182.00 Aligned_cols=269 Identities=10% Similarity=0.089 Sum_probs=197.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-------CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeec-ccccCCc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGE-------DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLS-PKHLDNH 526 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~-------DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la-~~~~~~~ 526 (927)
....+..++|+|+|++|++++. ++.|.+||..+++....+... .....+.+++++..+. +...++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND------LKPFGATINNTTQTLWFGNTVNSA 112 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES------SCCCSEEEETTTTEEEEEETTTTE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC------CCcceEEECCCCCEEEEEecCCCE
Confidence 3456889999999999988874 568999999988766665321 1234567788887444 3333344
Q ss_pred eeeecccccccccccccCcccccceEeec-CCCceEEEccCCC---------CEEEEEecCC-cEEEEEe--CCCcEEEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFAL-SDKPICSFQGHLD---------DVLDLSWSKS-QHLLSSS--MDKTVRLW 593 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~-s~k~i~~l~gH~~---------~V~~l~~spd-~~L~Sgs--~DgtV~lW 593 (927)
+. +++. +++.+..+..+.. .+.+++|+|+ +++++++ .++.|.+|
T Consensus 113 v~-----------------------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~ 169 (353)
T 3vgz_A 113 VT-----------------------AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV 169 (353)
T ss_dssp EE-----------------------EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred EE-----------------------EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence 42 2332 2344444444332 2788999998 5666665 47899999
Q ss_pred eCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-----CCcEEEEEECCCCCEEEEE
Q 002407 594 HLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-----HEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 594 Dl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-----~~~V~sla~spdg~~l~tg 667 (927)
|+.+++.+..+. +...+.+++|+| ++++|+++..++.|.+||+.+++.+..... ...+..++|+|++++++++
T Consensus 170 d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 170 DGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp ETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred cCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 999999998888 667789999999 999999999999999999999988765443 4468889999999988777
Q ss_pred ECC-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcce
Q 002407 668 SYK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQ 746 (927)
Q Consensus 668 s~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v 746 (927)
+.+ +.|.+||+.+++....... .. ...++|+|++..++++...++.|.+||........... ....+
T Consensus 249 ~~~~~~v~~~d~~~~~~~~~~~~--------~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~ 316 (353)
T 3vgz_A 249 DSKAAEVLVVDTRNGNILAKVAA--------PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHP 316 (353)
T ss_dssp ESSSSEEEEEETTTCCEEEEEEC--------SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEE
T ss_pred eCCCCEEEEEECCCCcEEEEEEc--------CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCC
Confidence 654 8999999999887766542 11 24689999998555555579999999975543332222 23467
Q ss_pred EEEEEecCCCEEEEEECCC
Q 002407 747 ISASLTANGRYVVSASEDS 765 (927)
Q Consensus 747 ~sv~fspdg~~Lasgs~Dg 765 (927)
..++|+|+|++|+.+..++
T Consensus 317 ~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEECTTSCEEEEEEECC
T ss_pred CeEEEcCCCCEEEEEEccc
Confidence 8999999999887776654
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=3.6e-18 Score=203.99 Aligned_cols=271 Identities=9% Similarity=0.054 Sum_probs=195.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeeccccc---CCceeee
Q 002407 455 HNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHL---DNHLEKK 530 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~---~~~i~~~ 530 (927)
+..+|++++|+|||++||+++. ||+++||++..++. ..+. ..+...+..+.|+|+ .++++... +.....
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt----~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l- 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLN----REPINSVLDPHYGVG-RVILVRDVSKGAEQHAL- 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECC----SSCCSEECEECTTCS-EEEEEEECSTTSCCEEE-
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeee----cccccccccccCCCC-eEEEEeccCCCCcceEE-
Confidence 3567999999999999999887 99999999855543 2221 222256778999999 66655432 111110
Q ss_pred cccccccccccccCcccccceEeec--CCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFAL--SDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~--s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
..+.. .+... .+..+. .+...+|+|+ +.+++...++.+.+||+.+++......+
T Consensus 93 --------------------~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 93 --------------------FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp --------------------EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred --------------------EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 11122 22222 222222 2335577776 4555555555666999999987777665
Q ss_pred CCceEEEEEccCCCCEEEEEECC----CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC--eEEEEECCC
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG--SCHLYNTSE 680 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~D----g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg--~I~IwDl~~ 680 (927)
.. .+++|+| ++++|++++.+ ..|++||+.+++...+..+...+..++|+|||++|+++..++ .|++||+.+
T Consensus 151 ~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 151 PG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp SS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred CC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 55 8999999 99999988877 779999999998888877888899999999999999888888 899999998
Q ss_pred CeeeeecccccccccccCCCCCeEEEE--------EcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQ--------FAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~--------fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
++.. .. ..+...+..++ |+|++ .++++++.++.++||+. . .... .....+.+++|+
T Consensus 228 ~~~~-~~---------~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g--~~~~--~~~~~v~~~~~s 291 (582)
T 3o4h_A 228 GSVE-DL---------ELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID-G--ERVE--APQGNHGRVVLW 291 (582)
T ss_dssp CCEE-EC---------CCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-T--EEEC--CCSSEEEEEEEE
T ss_pred CcEE-Ec---------cCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-C--Ceec--cCCCceEEEEec
Confidence 8766 32 24444555555 99999 68999999999999998 2 1111 234567889999
Q ss_pred cCCCEEEEEECCCc---EEEEECCC
Q 002407 753 ANGRYVVSASEDSY---VYVWKYEA 774 (927)
Q Consensus 753 pdg~~Lasgs~Dg~---I~IWdl~s 774 (927)
+++++++++.+.. |++|++.+
T Consensus 292 -dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 292 -RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999887754 67776653
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=8.2e-18 Score=205.34 Aligned_cols=197 Identities=8% Similarity=0.106 Sum_probs=151.1
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-----C
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-----R 640 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-----~ 640 (927)
+...|.+++|+|++.++.+ .+++|++||+.+++......+...+.+++|+| ++++|+++ .++.|++||+.+ +
T Consensus 80 ~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 80 DAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp --CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cccCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCC
Confidence 3457899999999666655 46999999999998877777888899999999 99999885 679999999998 8
Q ss_pred cEEEeccCCCc---------------EEEEEECCCCCEEEEEE---------------------------------CCCe
Q 002407 641 QVVDWNDLHEM---------------VTAACYTPDGQGALVGS---------------------------------YKGS 672 (927)
Q Consensus 641 ~~v~~~~~~~~---------------V~sla~spdg~~l~tgs---------------------------------~Dg~ 672 (927)
+.......... +.+++|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 77665443332 48899999999999987 4467
Q ss_pred EEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-----cEEEEECCcc--eEEEEeecCCc-
Q 002407 673 CHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-----RIRVVDGIDL--VHKFKGFRNTN- 744 (927)
Q Consensus 673 I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-----~I~VwD~~~~--~~~~~~~~~~~- 744 (927)
|++||+.+++...... ...+...+..++|+|+++ .|++++.++ .|++||.... ...+.......
T Consensus 237 l~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~ 308 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQT-------GEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHY 308 (706)
T ss_dssp EEEEETTTTEEEECCC-------CSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred EEEEECCCCceEeecc-------CCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCe
Confidence 9999999887654321 124567799999999997 677766665 8999996543 22222222222
Q ss_pred --ceEEEEEec--CCCEEEEEECCCcEEEEECC
Q 002407 745 --SQISASLTA--NGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 745 --~v~sv~fsp--dg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+..++|+| ||++|+++..|+.++||.+.
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 235689999 99999999999999999886
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.78 E-value=5.2e-17 Score=178.06 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=148.5
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC-CcEEEEeCC--CCcE--EEEEecCCceEEEEEccCCCCEEEEEEC-CCcEEEEeC-
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD-KTVRLWHLS--SKTC--LKIFSHSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSI- 637 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D-gtV~lWDl~--t~~~--~~~~~h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl- 637 (927)
|...+.+++|+|+ .+|++++.+ +.|++|++. +++. +..+.....+..++|+| ++++|++++. ++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECC
Confidence 5567788999999 568888876 999999998 5553 34455455889999999 8888776665 788999999
Q ss_pred --CCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC-Ceeeeec--ccccccccccCCCCCeEEEEEcCC
Q 002407 638 --PERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKS--PINLQNKKKRSHQRKITGFQFAPG 711 (927)
Q Consensus 638 --~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~-~~~~~~~--~i~~~~~~~~~h~~~Vtsl~fspd 711 (927)
...+.+........+..++|+|++++|++++ .++.|.+||+.+ ++..... ... ......+..++|+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 115 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT------TVEGAGPRHMVFHPN 188 (343)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE------CSTTCCEEEEEECTT
T ss_pred CCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc------cCCCCCcceEEECCC
Confidence 4445555666667789999999999888887 899999999987 5543221 111 123457889999999
Q ss_pred CCcEEEEEECCCcEEEEECCc----c--eEEEEee----cCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 712 SSSEVLVTSADSRIRVVDGID----L--VHKFKGF----RNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 712 g~~~Llsgs~Dg~I~VwD~~~----~--~~~~~~~----~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
+..+++++..++.|.+|+... . ...+... .....+..++|+|+|++|+++. .++.|++|++..
T Consensus 189 g~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 189 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 885555556899999999632 1 2222211 1123566899999999887554 789999999984
No 147
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=6.6e-17 Score=172.35 Aligned_cols=261 Identities=11% Similarity=0.119 Sum_probs=167.6
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCC--CcEEEEEECC
Q 002407 583 SSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLH--EMVTAACYTP 659 (927)
Q Consensus 583 Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~--~~V~sla~sp 659 (927)
..+.|++|++||+.+++......|...|.+++|+| ++++|++++ ++.|++||+.+ ++.......+ ..+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 34678999999999999888888999999999999 999999887 78999999999 8777665443 6788999999
Q ss_pred CCCEEEEEEC--CC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC--Ccc
Q 002407 660 DGQGALVGSY--KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG--IDL 733 (927)
Q Consensus 660 dg~~l~tgs~--Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~--~~~ 733 (927)
++++|++++. ++ .|.+|++.++..... .....+..++|+|++..+++++..++.++||+. ...
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTPRLM-----------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCCEEC-----------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCceEEe-----------ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 9999999983 33 455555555443221 223348899999999865558889999999983 222
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC-CCCcccccccceeeeeeeecCCCeEEEEe-cCCceeE
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA-ESRPSRSKSITVTHSYEHFHCQDVSVAIP-WPGVGDT 810 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s-~~~~~~~~~~~~~~~~~~~~~~~v~vavs-~~g~~~i 810 (927)
. ......+...+..++|+|+|++|+.++ .++.++||++.. ..................|++++..+++. .++....
T Consensus 164 ~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 242 (297)
T 2ojh_A 164 V-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD 242 (297)
T ss_dssp C-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred c-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence 1 122333456789999999999888776 589999999863 33333332222222334444444333322 1110000
Q ss_pred E-eecCCceeeccccCCCCCcceeccCCCcccCcceeeecCCCCeEEEec
Q 002407 811 W-GLQDTYLDEFSTANHPPTPVEEISGNEDCRSATGYTNSPLNGTISSAT 859 (927)
Q Consensus 811 ~-~~~d~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fSPdg~~Lasas 859 (927)
. ......+..|+........+..+.++. .....++|+|++++|++++
T Consensus 243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQ--GTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp CCSSEEEEEEEEETTSCSCEEEEEEEEST--TTSCSCCBCTTSSEEEEEE
T ss_pred ccccCceEEEEEecCCCCceeeeccCCCC--cccccceECCCCCEEEEEE
Confidence 0 000022333333332222222111111 1233456999999999876
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=5.1e-16 Score=173.26 Aligned_cols=269 Identities=10% Similarity=0.166 Sum_probs=177.8
Q ss_pred CceEEEEecc--CcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEecCcCcccceeecccccCc
Q 002407 429 ERVRVRQYGK--SCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED----CVIHVWQVVESERKGELLEKQEDGH 502 (927)
Q Consensus 429 ~~~~V~i~~~--~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D----gtVrVWdv~~~~~~~~l~~~~~~~~ 502 (927)
.+..|.+|.. .++++..+. .+ |...+..|+|+|||++|++++.+ +.|.+|++.......+
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~---~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~--------- 90 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLS---DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH--------- 90 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEE---EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE---------
T ss_pred CCCCEEEEEEeCCCCCEEEee---cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE---------
Confidence 3456666654 445444332 22 77788899999999999999886 7999999865310000
Q ss_pred cccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEE
Q 002407 503 LNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLL 582 (927)
Q Consensus 503 ~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~ 582 (927)
.+..+..+......+++ ..++|+
T Consensus 91 --------------------------------------------------------~~~~~~~~~~~p~~~~~-dg~~l~ 113 (361)
T 3scy_A 91 --------------------------------------------------------LLNTQKTMGADPCYLTT-NGKNIV 113 (361)
T ss_dssp --------------------------------------------------------EEEEEECSSSCEEEEEE-CSSEEE
T ss_pred --------------------------------------------------------EeeEeccCCCCcEEEEE-CCCEEE
Confidence 11122223445666777 336666
Q ss_pred EEe-CCCcEEEEeCCCCcEEE----EEec-----------CCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCc----
Q 002407 583 SSS-MDKTVRLWHLSSKTCLK----IFSH-----------SDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQ---- 641 (927)
Q Consensus 583 Sgs-~DgtV~lWDl~t~~~~~----~~~h-----------~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~---- 641 (927)
+++ .++.|.+|++.....+. .+.+ ...+.+++|+| ++++|+++. .++.|.+|++....
T Consensus 114 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~ 192 (361)
T 3scy_A 114 TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADN 192 (361)
T ss_dssp EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCccc
Confidence 665 68899999997543221 1122 23458899999 998766655 47899999887533
Q ss_pred ---E-------EEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 642 ---V-------VDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 642 ---~-------v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+ .........+..++|+|+|+++++++ .++.|.+|++.++.+.....+.. ...+...+..++|+|
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~----~~~~~~~~~~i~~sp 268 (361)
T 3scy_A 193 KEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA----DTVNAQGSGDIHLSP 268 (361)
T ss_dssp CCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES----CSSCCCCEEEEEECT
T ss_pred ccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec----CCCCCCCcccEEECC
Confidence 1 22334456788999999999888877 58999999998776533322211 123345578999999
Q ss_pred CCCcEEEEEE-C-CCcEEEEECC--c-ceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 711 GSSSEVLVTS-A-DSRIRVVDGI--D-LVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 711 dg~~~Llsgs-~-Dg~I~VwD~~--~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
+++ +|+++. . ++.|.+|+.. . .............+..++|+|||++|++++ .++.|.+|+++.
T Consensus 269 dg~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 269 DGK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TSS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 998 454544 4 5899999963 1 222222222244577899999999998888 678899987753
No 149
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.76 E-value=2.7e-17 Score=201.03 Aligned_cols=294 Identities=12% Similarity=0.104 Sum_probs=191.6
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEecCcCcccceee
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLDGRYLASAGED---------CVIHVWQVVESERKGELL 495 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~---~I~~vafSpdG~~LaSgs~D---------gtVrVWdv~~~~~~~~l~ 495 (927)
..++.|++|+..+++... .+.+|.. .|.+++|||||++||+++.+ +.|.|||+.+++. ..+.
T Consensus 34 ~~dg~i~~~d~~~g~~~~-----~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 107 (723)
T 1xfd_A 34 EQKGTVRLWNVETNTSTV-----LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLD 107 (723)
T ss_dssp CSSSCEEEBCGGGCCCEE-----EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECC
T ss_pred eCCCCEEEEECCCCcEEE-----EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-Eecc
Confidence 356689999988776543 3456665 49999999999999999875 7788999998764 2221
Q ss_pred cccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCC------
Q 002407 496 EKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLD------ 568 (927)
Q Consensus 496 ~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~------ 568 (927)
....+...+..+.|+|++..++.... ..+. +++.. ++.......+..
T Consensus 108 --~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~-----------------------~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 108 --PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY-----------------------YCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp --CTTCCSCCCSBCCBCSSTTCEEEEET-TEEE-----------------------EESSSSSCCEEEECCCBTTTEEEE
T ss_pred --CCccccccccccEECCCCCEEEEEEC-CeEE-----------------------EEECCCCceEEEecCCCCCceECc
Confidence 11233334678899999998888754 2332 22222 222222333222
Q ss_pred ------------CEEEEEecCC-cEEEEEeCCC----------------------------------cEEEEeCCCCcEE
Q 002407 569 ------------DVLDLSWSKS-QHLLSSSMDK----------------------------------TVRLWHLSSKTCL 601 (927)
Q Consensus 569 ------------~V~~l~~spd-~~L~Sgs~Dg----------------------------------tV~lWDl~t~~~~ 601 (927)
.+.+++|+|| .+|++++.|+ +|++||+.+++..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 2378999999 6788777543 7999999998865
Q ss_pred EEEe-c------CCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCCcEEEecc--CCCcE----EEEEECCCCCEE
Q 002407 602 KIFS-H------SDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQVVDWND--LHEMV----TAACYTPDGQGA 664 (927)
Q Consensus 602 ~~~~-h------~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~~~v~~~~--~~~~V----~sla~spdg~~l 664 (927)
..+. + ...+..++|+| ++++|++... +..|++||+.++++..... +...+ ..++|+|||+.|
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 320 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred EEeeCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence 5554 3 56799999999 9998877653 3569999999988765432 22333 378999999977
Q ss_pred EE--EECCC------eEEEEE-CCCCee--eeecccccccccccCCCCCeEE-EEEcCCCCcEEEEEECC--CcEEEEEC
Q 002407 665 LV--GSYKG------SCHLYN-TSENKL--QQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSAD--SRIRVVDG 730 (927)
Q Consensus 665 ~t--gs~Dg------~I~IwD-l~~~~~--~~~~~i~~~~~~~~~h~~~Vts-l~fspdg~~~Llsgs~D--g~I~VwD~ 730 (927)
+. +..++ .|++|| ..++.. ...+ ......+.. ++|+|+++.+++++..+ +.++||+.
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 321 FFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI---------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS---------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EEEEecccCCCcceeEEEEEeccCCCCccceeEe---------ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 75 44566 567777 344330 2211 122334444 68999998444444444 78999984
Q ss_pred Cc----ceEEEEe-ecCCcceEEEEEecCCCEEEEEEC
Q 002407 731 ID----LVHKFKG-FRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 731 ~~----~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.. ....+.. ..+...+..++|+|||++|+....
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 31 1111111 002445778999999998887543
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=1.3e-16 Score=184.23 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=127.7
Q ss_pred cCCCCEEEEEEcCCCCEEE----EEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 454 AHNGSIWSIKFSLDGRYLA----SAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~La----Sgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.|.+.|++|+|+|+|++|| +|+.|++|+|||+.+......- ...
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~----------------------------~~~---- 137 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ----------------------------QKR---- 137 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS----------------------------SCC----
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC----------------------------Ccc----
Confidence 4778899999999999999 8889999999998653100000 000
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEE-ec
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIF-SH 606 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~-~h 606 (927)
.-..+..+.+|...|.+++|+|+ .+|++++.|++|++||+.++..+... .|
T Consensus 138 --------------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 138 --------------------------PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp --------------------------CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred --------------------------eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 00112345679999999999996 67999999999999999998665443 48
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cC-------CCcEEEEEECCCCCEEEEE-ECCC------
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DL-------HEMVTAACYTPDGQGALVG-SYKG------ 671 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~-------~~~V~sla~spdg~~l~tg-s~Dg------ 671 (927)
...|++++|+| ++++|++|+.||.|++||++ ++..... .+ ...+.+++|++++.++++. ..+|
T Consensus 192 ~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence 89999999999 89999999999999999998 4433322 11 2379999999988777553 3343
Q ss_pred eEEEEECCCC
Q 002407 672 SCHLYNTSEN 681 (927)
Q Consensus 672 ~I~IwDl~~~ 681 (927)
.+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 3899999865
No 151
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.73 E-value=4.1e-16 Score=170.39 Aligned_cols=193 Identities=10% Similarity=0.014 Sum_probs=143.8
Q ss_pred EEEEEecCCc-EE-EEEeCCCcEEEEeCCCCcEEEEEecCC------ceEEEEEccCCCCEEEEEE------------CC
Q 002407 570 VLDLSWSKSQ-HL-LSSSMDKTVRLWHLSSKTCLKIFSHSD------YVTCIQFNPVDDRYFISGS------------LD 629 (927)
Q Consensus 570 V~~l~~spd~-~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~~------~V~~v~fsp~dg~~L~sgs------------~D 629 (927)
+..++|+|++ ++ +++..++.|.+||+.+++.+..+.... .+..++|+| ++++|+++. .+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccC
Confidence 5678999984 55 555668899999999999888776433 688999999 998888886 57
Q ss_pred CcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 630 AKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
+.|.+||+.+++.+........+..++|+|+|++|+++ ++.|++||+.+++....+... ..... +.|+
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~-------~~~~~---~~~s 182 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQ-------SWEAE---TYAQ 182 (337)
T ss_dssp CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECST-------TTTTT---TBCC
T ss_pred ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecc-------ccCCC---ceeC
Confidence 99999999999888776667778899999999988888 689999999998876554321 11122 2678
Q ss_pred CCCCcEEEEEECCC-----------------------cEEEEECCcceE-EEEeecCCcceEEEEEecCCCEEEEEECCC
Q 002407 710 PGSSSEVLVTSADS-----------------------RIRVVDGIDLVH-KFKGFRNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 710 pdg~~~Llsgs~Dg-----------------------~I~VwD~~~~~~-~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
|++..+++++..++ .|.+||...... .+....+...+..++|+|+|++|+++ ++
T Consensus 183 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~ 260 (337)
T 1pby_B 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN 260 (337)
T ss_dssp CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES
T ss_pred CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CC
Confidence 88764333332333 468899654322 23333344567789999999999988 78
Q ss_pred cEEEEECCCCCC
Q 002407 766 YVYVWKYEAESR 777 (927)
Q Consensus 766 ~I~IWdl~s~~~ 777 (927)
.|++||+.+++.
T Consensus 261 ~v~~~d~~~~~~ 272 (337)
T 1pby_B 261 VLESFDLEKNAS 272 (337)
T ss_dssp EEEEEETTTTEE
T ss_pred eEEEEECCCCcC
Confidence 999999987654
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=1.5e-16 Score=175.17 Aligned_cols=241 Identities=10% Similarity=-0.004 Sum_probs=171.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.+++++++.++++++.++.|++||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~--------------------------------------------- 38 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV--------------------------------------------- 38 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE---------------------------------------------
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEe---------------------------------------------
Confidence 46788899999999999999999998765433221
Q ss_pred cccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EE-EEEeCCCcEEEEeCCCCcEEEEEecC-------CceE
Q 002407 541 LSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HL-LSSSMDKTVRLWHLSSKTCLKIFSHS-------DYVT 611 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L-~Sgs~DgtV~lWDl~t~~~~~~~~h~-------~~V~ 611 (927)
.+....+..++|+|++ ++ ++...++.|.+||+.+++.+..+... ..+.
T Consensus 39 -----------------------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~ 95 (349)
T 1jmx_B 39 -----------------------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 95 (349)
T ss_dssp -----------------------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred -----------------------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc
Confidence 0011135678899984 44 45567899999999999988777632 2378
Q ss_pred EEEEccCCCCEEEEEECC------------CcEEEEeCCCCc---EEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEE
Q 002407 612 CIQFNPVDDRYFISGSLD------------AKVRIWSIPERQ---VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLY 676 (927)
Q Consensus 612 ~v~fsp~dg~~L~sgs~D------------g~I~IWDl~t~~---~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~Iw 676 (927)
.++|+| ++++|++++.+ +.|.+||+.+++ .+....++..+.+++|+|+|+ +++++ +.|.+|
T Consensus 96 ~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~ 171 (349)
T 1jmx_B 96 SFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKM 171 (349)
T ss_dssp CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEE
T ss_pred ceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEE
Confidence 999999 99999988865 899999998843 333444556788999999999 66654 349999
Q ss_pred ECCCCeeeeeccccccccc-----------------------------------------------------------cc
Q 002407 677 NTSENKLQQKSPINLQNKK-----------------------------------------------------------KR 697 (927)
Q Consensus 677 Dl~~~~~~~~~~i~~~~~~-----------------------------------------------------------~~ 697 (927)
|+.+++....+........ ..
T Consensus 172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
T 1jmx_B 172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 251 (349)
T ss_dssp CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence 9998887655432210000 00
Q ss_pred CCCCCeEEEEEcC-CCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 698 SHQRKITGFQFAP-GSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 698 ~h~~~Vtsl~fsp-dg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.+...+..++|+| ++. +++++ ++.|.+||........... ....+..++|+|+|++|++++.++.|++||+.+.+
T Consensus 252 ~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 252 DLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred cCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccCeEEEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 0112456788889 887 55555 8899999976543322221 23346789999999999888889999999998754
Q ss_pred C
Q 002407 777 R 777 (927)
Q Consensus 777 ~ 777 (927)
.
T Consensus 328 ~ 328 (349)
T 1jmx_B 328 K 328 (349)
T ss_dssp E
T ss_pred e
Confidence 3
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.72 E-value=2.2e-15 Score=166.25 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=157.3
Q ss_pred CCCCEEEEEecCC-cEEEEEeC-------CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEE-EEECCCcEEEEe
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSM-------DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWS 636 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~-------DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWD 636 (927)
....+..++|+|+ ++|++++. ++.|.+||..+++.+..+.....+..++|+| ++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINN-TTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECC-CCCEEEEEecCCCEEEEEe
Confidence 3456889999999 67777664 5689999999999999988777789999999 887554 555579999999
Q ss_pred CCCCcEEEeccCCC----------cEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 637 IPERQVVDWNDLHE----------MVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 637 l~t~~~v~~~~~~~----------~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
+.+++.+....... .+..++|+|+|++++++. .++.|.+||+.+++....+. .+...+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~---------~~~~~~~ 188 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ---------NTGKMST 188 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC---------CCCTTCC
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec---------CCCCccc
Confidence 99998876554432 278899999999888876 47889999999988776542 2344578
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeec----CCcceEEEEEecCCCEEEEEEC-CCcEEEEECCCCCCc
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFR----NTNSQISASLTANGRYVVSASE-DSYVYVWKYEAESRP 778 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~-Dg~I~IWdl~s~~~~ 778 (927)
+++|+|++. .|+++..++.|.+||............ ....+..++|+|++++|++++. ++.|++||+.+++..
T Consensus 189 ~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 189 GLALDSEGK-RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp CCEEETTTT-EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE
T ss_pred eEEECCCCC-EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 899999987 688888899999999765433322221 3445778999999998877765 489999999886643
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.72 E-value=1.8e-16 Score=183.04 Aligned_cols=206 Identities=16% Similarity=0.156 Sum_probs=142.5
Q ss_pred cCCCCEEEEEecCC-cEEE----EEeCCCcEEEEeCCCC--------cE---EEEEe-cCCceEEEEEccCCCCEEEEEE
Q 002407 565 GHLDDVLDLSWSKS-QHLL----SSSMDKTVRLWHLSSK--------TC---LKIFS-HSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~----Sgs~DgtV~lWDl~t~--------~~---~~~~~-h~~~V~~v~fsp~dg~~L~sgs 627 (927)
.|...|++++|+|+ .+|+ +++.|++|+|||+.++ +. +..+. |...|.+++|+|.++++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 36778999999999 6677 7888999999998754 22 23333 8999999999994489999999
Q ss_pred CCCcEEEEeCCCCcEEE-eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 628 LDAKVRIWSIPERQVVD-WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 628 ~Dg~I~IWDl~t~~~v~-~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
.||+|++||++++..+. ...+...|.+++|+|+|++|++|+.||.|++||++ ++....+.... .....|...|.++
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~--~~~~~~~~~v~~v 246 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP--FYESDHPVRVLDV 246 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT--TCCTTSCEEEEEE
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc--ccCCCCceeEEEE
Confidence 99999999999886553 44567799999999999999999999999999998 44433332111 0011244589999
Q ss_pred EEcCCCCcEEEEEECCCc------EEEEECCcc----eEEEEee--------cCCcceEEEEEecCCCEEEEEEC-CCcE
Q 002407 707 QFAPGSSSEVLVTSADSR------IRVVDGIDL----VHKFKGF--------RNTNSQISASLTANGRYVVSASE-DSYV 767 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~------I~VwD~~~~----~~~~~~~--------~~~~~v~sv~fspdg~~Lasgs~-Dg~I 767 (927)
+|++++..+++....+|. +++|+..+. ...+..+ ....+...+.+-++.+++++++. .+.|
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv 326 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEV 326 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCce
Confidence 999976533333445543 889996532 1122211 11222233444477777666654 4446
Q ss_pred EEEECC
Q 002407 768 YVWKYE 773 (927)
Q Consensus 768 ~IWdl~ 773 (927)
.|....
T Consensus 327 ~vl~~~ 332 (434)
T 2oit_A 327 SILARQ 332 (434)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 666643
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=1.7e-15 Score=170.15 Aligned_cols=250 Identities=11% Similarity=0.073 Sum_probs=162.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC-cCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccc
Q 002407 455 HNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV-ESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRG 533 (927)
Q Consensus 455 H~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~-~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~ 533 (927)
+...+..++|+|||++|++++.+ .|.+|++. +++......
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-------------------------------------- 78 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-------------------------------------- 78 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE--------------------------------------
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE--------------------------------------
Confidence 44568899999999999999988 99999986 443211100
Q ss_pred ccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcE---EEEEe-------------CCCcEEEEeCC-
Q 002407 534 RSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQH---LLSSS-------------MDKTVRLWHLS- 596 (927)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~---L~Sgs-------------~DgtV~lWDl~- 596 (927)
...+ +.+..++|+|++. ++++. .++++.+|++.
T Consensus 79 -----------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~ 128 (365)
T 1jof_A 79 -----------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE 128 (365)
T ss_dssp -----------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT
T ss_pred -----------------------------eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC
Confidence 0000 0122356667643 23332 68899999997
Q ss_pred CCcEEEEEe-----cCCceEEEEEccCCCCEEEEEEC-CCcEEEEeCC-CCcEEE--ecc---CCCcEEEEEECCCCCEE
Q 002407 597 SKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSL-DAKVRIWSIP-ERQVVD--WND---LHEMVTAACYTPDGQGA 664 (927)
Q Consensus 597 t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~-Dg~I~IWDl~-t~~~v~--~~~---~~~~V~sla~spdg~~l 664 (927)
.++....+. +...+.+++|+| ++++|+++.. ++.|++|++. ++++.. ... +...+..++|+|+|++|
T Consensus 129 ~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l 207 (365)
T 1jof_A 129 TGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL 207 (365)
T ss_dssp TCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred CCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE
Confidence 466544333 456799999999 9998887764 6789999998 776532 222 24579999999999999
Q ss_pred EEEEC-CCeEEEEECC--CCeeeee-cccccccccccCCCC------CeEEEE-EcCCCCcEEEEEEC-CC-----cEEE
Q 002407 665 LVGSY-KGSCHLYNTS--ENKLQQK-SPINLQNKKKRSHQR------KITGFQ-FAPGSSSEVLVTSA-DS-----RIRV 727 (927)
Q Consensus 665 ~tgs~-Dg~I~IwDl~--~~~~~~~-~~i~~~~~~~~~h~~------~Vtsl~-fspdg~~~Llsgs~-Dg-----~I~V 727 (927)
+++.. ++.|.+|++. ++++... ..+.........+.. .+..++ |+|+++ +|+++.. +. .|.+
T Consensus 208 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v 286 (365)
T 1jof_A 208 YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAG 286 (365)
T ss_dssp EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEE
T ss_pred EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEE
Confidence 88875 6899999875 4554321 001000000012222 588999 999998 4555443 33 8999
Q ss_pred EECC-c-ceEE-EE-eecCCcceEEEEEec---CCCEEEEEECC-CcEEEEECCCC
Q 002407 728 VDGI-D-LVHK-FK-GFRNTNSQISASLTA---NGRYVVSASED-SYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~-~-~~~~-~~-~~~~~~~v~sv~fsp---dg~~Lasgs~D-g~I~IWdl~s~ 775 (927)
|+.. . .... .. ..........++|+| ||++|++++.+ +.|.||+++..
T Consensus 287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9853 2 1221 11 111233355788999 89999999865 89999999764
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.69 E-value=7.8e-15 Score=162.48 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=141.3
Q ss_pred CCCCEEEEEecCCcEEEEEeC---CCcEEEEeCCCCcE--EEEE-ecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCC
Q 002407 566 HLDDVLDLSWSKSQHLLSSSM---DKTVRLWHLSSKTC--LKIF-SHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIP 638 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~---DgtV~lWDl~t~~~--~~~~-~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~ 638 (927)
+...+..++|+|++.|++++. ++.|++|++.+++. +..+ .+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567799999966776665 68999999987763 3332 3778899999999 999888887 67899999995
Q ss_pred -CCcE--EEeccCC----------CcEEEEEECCCCCEEEEEECCCeEEEEECC-CCeeeeecccccccccccCCCCCeE
Q 002407 639 -ERQV--VDWNDLH----------EMVTAACYTPDGQGALVGSYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 639 -t~~~--v~~~~~~----------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
++.. +...... ..+..++|+|+|+++++...++.|++|++. ++++.....+. ......+.
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~------~~~g~~p~ 190 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT------MEAGFGPR 190 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE------CCTTCCEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE------cCCCCCCc
Confidence 3332 2222221 248899999999966666668899999998 55443321111 12334678
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECC----cceE--EEEeecC----CcceEEEEEecCCCEE-EEEECCCcEEEEECC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGI----DLVH--KFKGFRN----TNSQISASLTANGRYV-VSASEDSYVYVWKYE 773 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~----~~~~--~~~~~~~----~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~ 773 (927)
.++|+|+++.++++...++.|.+|+.. .... .+..... ...+..++|+|||++| ++...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 899999998555556778999999843 2111 1221111 1347789999999987 455668999999997
Q ss_pred C
Q 002407 774 A 774 (927)
Q Consensus 774 s 774 (927)
.
T Consensus 271 ~ 271 (347)
T 3hfq_A 271 A 271 (347)
T ss_dssp G
T ss_pred C
Confidence 4
No 157
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=7.8e-14 Score=150.15 Aligned_cols=246 Identities=9% Similarity=0.110 Sum_probs=177.3
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
.+|-..+.+|+++++|+++++...++.|.+|+.. ++....+.. .+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~-----------------------~~----------- 70 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGE-----------------------CG----------- 70 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECC-----------------------BS-----------
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecc-----------------------cC-----------
Confidence 4567789999999999999988889999999975 322211100 00
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe-cCCcEEEEEeC--CCcEEEEeCCCCcEEEEEe--cC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW-SKSQHLLSSSM--DKTVRLWHLSSKTCLKIFS--HS 607 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~-spd~~L~Sgs~--DgtV~lWDl~t~~~~~~~~--h~ 607 (927)
...+|...+..+++ .+++.|+.+.. ++.|++|| .+++.+..+. +.
T Consensus 71 -----------------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~ 120 (286)
T 1q7f_A 71 -----------------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATIL 120 (286)
T ss_dssp -----------------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTC
T ss_pred -----------------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccC
Confidence 00134456788999 46677666664 89999999 5677777665 44
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
..+..|+++| +++++++...++.|.+||.. ++.+..+ .....+..++++++|+++++...++.|++||.... ..
T Consensus 121 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~ 197 (286)
T 1q7f_A 121 QHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YL 197 (286)
T ss_dssp SCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EE
T ss_pred CCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EE
Confidence 6789999999 88888887778999999965 4444433 23357899999999998777778899999998543 33
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-cEEEEECC-cceEEEEeecCCcceEEEEEecCCCEEEEEE
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-RIRVVDGI-DLVHKFKGFRNTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-~I~VwD~~-~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs 762 (927)
..+.. ..+...+.++++++++. ++++...++ .|.+||.. ..+..+........+..++++|+|+++++ +
T Consensus 198 ~~~~~-------~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~ 268 (286)
T 1q7f_A 198 RQIGG-------EGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-S 268 (286)
T ss_dssp EEESC-------TTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E
T ss_pred EEEcc-------CCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-C
Confidence 33211 12336789999999885 666666675 99999954 34445544433445778999999987777 6
Q ss_pred CCCcEEEEECCCC
Q 002407 763 EDSYVYVWKYEAE 775 (927)
Q Consensus 763 ~Dg~I~IWdl~s~ 775 (927)
.|+.|++|++...
T Consensus 269 ~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 269 KDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEcccc
Confidence 7999999998654
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.67 E-value=5.4e-16 Score=189.77 Aligned_cols=311 Identities=11% Similarity=0.076 Sum_probs=194.7
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEecCcCcccceeec
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNG---SIWSIKFSLDGRYLASAGE---------DCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~---~I~~vafSpdG~~LaSgs~---------DgtVrVWdv~~~~~~~~l~~ 496 (927)
.++.|++|+..+++...+ +.+|.. .|.+++|||||++||+++. |+.|++||+.+++.+....
T Consensus 34 ~d~~i~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~- 107 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTI-----LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE- 107 (719)
T ss_dssp TTSCEEEEESSSCCEEEE-----ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-
T ss_pred CCCCEEEEEcCCCcEEEE-----EccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-
Confidence 477899999887765433 244443 4899999999999999876 7899999999886521110
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCE------
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDV------ 570 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V------ 570 (927)
....+..+.|+||+..|+... ++.+..+........ .+ ...+.....+.||...|
T Consensus 108 -----l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~-~l------------~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 108 -----LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF-QI------------TFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp -----CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE-EC------------CCCCBTTTEEESSCCHHHHHHTT
T ss_pred -----cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE-EE------------ecCCCcCCeEcccccceeeeecc
Confidence 013466789999999998874 334433322110000 00 00011111222333222
Q ss_pred ---EEEEecCC-cEEEEEeCCC----------------------------------cEEEEeCCCCcEE---EEE-----
Q 002407 571 ---LDLSWSKS-QHLLSSSMDK----------------------------------TVRLWHLSSKTCL---KIF----- 604 (927)
Q Consensus 571 ---~~l~~spd-~~L~Sgs~Dg----------------------------------tV~lWDl~t~~~~---~~~----- 604 (927)
..++|+|| .+|++++.|. +|++||+.+++.. ...
T Consensus 169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 58999999 6788877652 7899999988752 221
Q ss_pred -ecCCceEEEEEccCCCCEEEEEECCC----cEEEEe----CCCCcEEEec-----cCCCcEE-----EEEECCCCCEEE
Q 002407 605 -SHSDYVTCIQFNPVDDRYFISGSLDA----KVRIWS----IPERQVVDWN-----DLHEMVT-----AACYTPDGQGAL 665 (927)
Q Consensus 605 -~h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWD----l~t~~~v~~~-----~~~~~V~-----sla~spdg~~l~ 665 (927)
.|...+..++|+| +++++++....+ .|.+|| +.++++.... .+...+. .+.|+|||+.|+
T Consensus 249 ~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 2677899999999 787777644332 488899 8777665544 3344555 789999999655
Q ss_pred E--EECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCc--c--
Q 002407 666 V--GSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA----DSRIRVVDGID--L-- 733 (927)
Q Consensus 666 t--gs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~I~VwD~~~--~-- 733 (927)
. ...+| .|.+||+.+++... + ..+...+..+.+. ++..+++++.. ++.+++|.... .
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~~~~-l---------t~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVENAIQ-I---------TSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP 396 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTTCEE-C---------SCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC
T ss_pred EEEEccCCceEEEEEECCCCceEe-c---------ccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC
Confidence 4 44555 57777877665321 1 2344557777777 77644444443 48888887321 1
Q ss_pred -eEEEEe-e-cCCcceEEEEEecCCCEEEEE-ECC--CcEEEEECCCCC
Q 002407 734 -VHKFKG-F-RNTNSQISASLTANGRYVVSA-SED--SYVYVWKYEAES 776 (927)
Q Consensus 734 -~~~~~~-~-~~~~~v~sv~fspdg~~Lasg-s~D--g~I~IWdl~s~~ 776 (927)
...+.. . .+...+..+.|+|++++|+.. +.. ..+++|++.+++
T Consensus 397 ~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 397 SKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 122211 0 023456789999999877754 333 468899987765
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=8.5e-15 Score=164.30 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=182.9
Q ss_pred EeecCCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccc
Q 002407 451 EIQAHNGSIWS-----IKFSLDGRYLASAGE-DCV--IHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKH 522 (927)
Q Consensus 451 ~L~gH~~~I~~-----vafSpdG~~LaSgs~-Dgt--VrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~ 522 (927)
.|..|...... .+|+|||++||.++. ++. |.+||+.+++..... ..+...+....|+|++..|+...
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSEEEEEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCEEEEEe
Confidence 34556665655 889999999999987 674 888888877644332 12222233456999999888876
Q ss_pred cCCceeeecccccccccccccCcccccceEeecC-CCceEEEccCCCCEEEEEe--cCCcEEEEE---------------
Q 002407 523 LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALS-DKPICSFQGHLDDVLDLSW--SKSQHLLSS--------------- 584 (927)
Q Consensus 523 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~k~i~~l~gH~~~V~~l~~--spd~~L~Sg--------------- 584 (927)
.+..+. ++++. ++....+..+...+....| ++++.++.+
T Consensus 100 ~~~~l~-----------------------~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 100 DGRNLM-----------------------RVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp TTTEEE-----------------------EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred CCCeEE-----------------------EEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 554332 22332 2233334444444544443 677443332
Q ss_pred --------eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEeccCC-
Q 002407 585 --------SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLH- 649 (927)
Q Consensus 585 --------s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~~~~- 649 (927)
..+..|++||+.+++......+...+..++|+|.+++.|+....+ ..|.++|+..++........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 245789999999998877777888899999999566777766653 37888898877766665555
Q ss_pred -CcEEEEEECCCCCEEEEEEC-CC----eEEEEECCCCeeeeecccccccccccCCC-CCeEEEEEcCCCCcEEEEE---
Q 002407 650 -EMVTAACYTPDGQGALVGSY-KG----SCHLYNTSENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVT--- 719 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~-Dg----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fspdg~~~Llsg--- 719 (927)
..+..++|+|||+.|+..+. ++ .|++||+.+++.......... .+. .....+.|+|+|..++++.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-----SHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-----EEEEECTTSSEEEEEECCC-------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-----eeeeecCCCCeEccCCCcceeEeeec
Confidence 35788999999997765443 22 399999998875433221100 000 0011236899988544433
Q ss_pred -----ECCCcEEEEECCcc-eEEEEeecCC---------cceEEEEEecCCCEEEEEE-CCCcEEEEECC
Q 002407 720 -----SADSRIRVVDGIDL-VHKFKGFRNT---------NSQISASLTANGRYVVSAS-EDSYVYVWKYE 773 (927)
Q Consensus 720 -----s~Dg~I~VwD~~~~-~~~~~~~~~~---------~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~ 773 (927)
..+..|++||.... ...+..+... ..+..++|+|||++|+..+ .++...||.++
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45678999996543 2333333210 0366789999999888766 46776677654
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.65 E-value=1e-14 Score=160.29 Aligned_cols=229 Identities=7% Similarity=0.006 Sum_probs=160.6
Q ss_pred CCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEecCcCcccceeecc
Q 002407 420 SQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLA-SAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 420 ~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vafSpdG~~La-Sgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
...+++++..+++|.+|+..+++... .+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++....+...
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYK-----SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEE-----EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEE-----EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 34456677778899999987765433 333332 2578999999999665 5557899999999876543332100
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
. .+ ..+...+..++|+|
T Consensus 85 ~-----------------------------------------------------------~~----~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 85 S-----------------------------------------------------------VP----GEVGRSMYSFAISP 101 (349)
T ss_dssp C-----------------------------------------------------------ST----TEEEECSSCEEECT
T ss_pred c-----------------------------------------------------------cc----ccccccccceEECC
Confidence 0 00 00012355688898
Q ss_pred C-cEEEEEeCC------------CcEEEEeCCCCc---EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 578 S-QHLLSSSMD------------KTVRLWHLSSKT---CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 578 d-~~L~Sgs~D------------gtV~lWDl~t~~---~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+ .+|++++.+ +.|.+||+.+++ .+..+.+...+.+++|+| +++ +++++ +.|.+||+.+++
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~ 177 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGK 177 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCC
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCc
Confidence 8 567777754 899999998843 345556666799999999 888 55554 449999999887
Q ss_pred EEEeccCCC---------------------------------------------------------------------cE
Q 002407 642 VVDWNDLHE---------------------------------------------------------------------MV 652 (927)
Q Consensus 642 ~v~~~~~~~---------------------------------------------------------------------~V 652 (927)
.+..+.... .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 765433221 34
Q ss_pred EEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC
Q 002407 653 TAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI 731 (927)
Q Consensus 653 ~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~ 731 (927)
..++|+| ++++++++ ++.|.+||+.+++....+. ....+.+++|+|++. .|++++.++.|.+||..
T Consensus 258 ~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg~-~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----------LDHTYYCVAFDKKGD-KLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----------CSSCCCEEEECSSSS-CEEEESBSSEEEEEETT
T ss_pred eeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----------CCCCccceEECCCCC-EEEEecCCCeEEEEecc
Confidence 5677889 99999988 8899999999988766543 223467899999987 45667888999999975
Q ss_pred cc
Q 002407 732 DL 733 (927)
Q Consensus 732 ~~ 733 (927)
..
T Consensus 325 ~~ 326 (349)
T 1jmx_B 325 TL 326 (349)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.63 E-value=4.9e-15 Score=176.82 Aligned_cols=263 Identities=12% Similarity=0.069 Sum_probs=178.9
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCC-CCEEEEEEcCCCCEEEEEeC---CCcEEEEecCc--
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHN-GSIWSIKFSLDGRYLASAGE---DCVIHVWQVVE-- 487 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~-~~I~~vafSpdG~~LaSgs~---DgtVrVWdv~~-- 487 (927)
+....|++.+++.+..++++++|....++. +.+..|. ..|..++|+|| ++|++++. +...+||.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYDGGET------VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTEE------EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred eecCCCCCeEEEEEccCCceeEEEEcCCCc------EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 444456666666665578899998655443 3344555 68999999999 88888775 56667776654
Q ss_pred CcccceeecccccCccccEEEEccCCCCC--eecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEcc
Q 002407 488 SERKGELLEKQEDGHLNMLLLANGSPEPT--SLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQG 565 (927)
Q Consensus 488 ~~~~~~l~~~~~~~~~~~v~~v~~spd~~--~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~g 565 (927)
......+.. .. ......++|++. .++....+.. .+|++.......+..
T Consensus 100 ~g~~~~l~~--~~----~~~~~~~s~dg~~~~~~s~~~~~~------------------------~l~d~~~g~~~~l~~ 149 (582)
T 3o4h_A 100 PGEEQRLEA--VK----PMRILSGVDTGEAVVFTGATEDRV------------------------ALYALDGGGLRELAR 149 (582)
T ss_dssp TTCCEECTT--SC----SBEEEEEEECSSCEEEEEECSSCE------------------------EEEEEETTEEEEEEE
T ss_pred CCccccccC--CC----CceeeeeCCCCCeEEEEecCCCCc------------------------eEEEccCCcEEEeec
Confidence 222222211 11 122346666654 3333322221 133443333334444
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC----CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCC
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD----KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIP 638 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D----gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~ 638 (927)
+.. .+++|+|| .+|++++.+ ..|++||+.+++......|...+..++|+| |+++|+++..++ .|++||+.
T Consensus 150 ~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 150 LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTT
T ss_pred CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCC
Confidence 444 78999999 667777776 789999999998876666888999999999 999999888888 89999999
Q ss_pred CCcEEEeccCCCcEEEEE--------ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 639 ERQVVDWNDLHEMVTAAC--------YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 639 t~~~v~~~~~~~~V~sla--------~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+++......+...+..++ |+|||.++++++.++.++||++ ++... .....|.+++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~------------~~~~~v~~~~~s- 291 (582)
T 3o4h_A 227 DGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE------------APQGNHGRVVLW- 291 (582)
T ss_dssp TCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC------------CCSSEEEEEEEE-
T ss_pred CCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec------------cCCCceEEEEec-
Confidence 988774444445555566 9999999999999999999999 55432 123568899999
Q ss_pred CCCcEEEEEECCC---cEEEEECCc
Q 002407 711 GSSSEVLVTSADS---RIRVVDGID 732 (927)
Q Consensus 711 dg~~~Llsgs~Dg---~I~VwD~~~ 732 (927)
++. ++++++.+. .|.+||...
T Consensus 292 dg~-~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 292 RGK-LVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTE-EEEEEEETTEEEEEEEETTCC
T ss_pred CCE-EEEEEcCCCCCCeEEEEcCCC
Confidence 765 667776663 477777543
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=182.58 Aligned_cols=284 Identities=10% Similarity=0.063 Sum_probs=179.3
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccc
Q 002407 461 SIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKS 540 (927)
Q Consensus 461 ~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~ 540 (927)
.++|+|||++++++ .|++|++||+.+++....+..... ....+..++|+||+..|+.+............
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~------- 89 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTM--KSVNASNYGLSPDRQFVYLESDYSKLWRYSYT------- 89 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHH--HTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-------
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccc--cccceeeEEECCCCCeEEEEecCceeEEeecc-------
Confidence 68999999766654 699999999998875544321100 00136788999999998876542100000000
Q ss_pred cccCcccccceEeecCCCce---EEEccCCCCEEEEEecCCc-EEEEEeCCCcEEEEeCCCCcEEEEEe--cCCce----
Q 002407 541 LSLDHMVVPETVFALSDKPI---CSFQGHLDDVLDLSWSKSQ-HLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYV---- 610 (927)
Q Consensus 541 ~~~~~~~~~~~v~~~s~k~i---~~l~gH~~~V~~l~~spd~-~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V---- 610 (927)
....+|++..... ..+ ...+..++|+||+ .|+.+. ++.|++|++.+++...... +...|
T Consensus 90 -------~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 90 -------ATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp -------EEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred -------eEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 0013344433322 222 2468889999994 566664 8899999999888765432 22222
Q ss_pred -------------EEEEEccCCCCEEEEEECCC----------------------------------cEEEEeCCCCcEE
Q 002407 611 -------------TCIQFNPVDDRYFISGSLDA----------------------------------KVRIWSIPERQVV 643 (927)
Q Consensus 611 -------------~~v~fsp~dg~~L~sgs~Dg----------------------------------~I~IWDl~t~~~v 643 (927)
.+++|+| |+++|++++.|. .|++||+.+++..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 4899999 999999988652 7889999987642
Q ss_pred ---Ee------ccCCCcEEEEEECCCCCEEEEEECC----CeEEEEE----CCCCeeeeecccccccccccCCCCCeE--
Q 002407 644 ---DW------NDLHEMVTAACYTPDGQGALVGSYK----GSCHLYN----TSENKLQQKSPINLQNKKKRSHQRKIT-- 704 (927)
Q Consensus 644 ---~~------~~~~~~V~sla~spdg~~l~tgs~D----g~I~IwD----l~~~~~~~~~~i~~~~~~~~~h~~~Vt-- 704 (927)
.. ..+...+..++|+||++++++.... ..|.+|| +.+++....... ....+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~ 312 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEH-----IEESRTGWAGGF 312 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEE-----EEECSSSCSSSS
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEec-----ccccCCceEccc
Confidence 22 2355678999999998777765433 2488899 777665433210 0013444454
Q ss_pred ---EEEEcCCCCcEEEE-EECCC--cEEEEECCcc-eEEEEeecCCcceEEEEEecCCCEEEEEECC-----CcEEEEEC
Q 002407 705 ---GFQFAPGSSSEVLV-TSADS--RIRVVDGIDL-VHKFKGFRNTNSQISASLTANGRYVVSASED-----SYVYVWKY 772 (927)
Q Consensus 705 ---sl~fspdg~~~Lls-gs~Dg--~I~VwD~~~~-~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl 772 (927)
.+.|+|++..+++. ...++ .|.+||.... ...+. .....+..+.+. +++.|+..+.+ +.++||.+
T Consensus 313 ~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 313 FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 78899999865553 44555 4666664332 22222 223446677777 88887777665 78899987
Q ss_pred CC
Q 002407 773 EA 774 (927)
Q Consensus 773 ~s 774 (927)
..
T Consensus 390 ~~ 391 (719)
T 1z68_A 390 SI 391 (719)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.62 E-value=5.9e-14 Score=172.85 Aligned_cols=280 Identities=10% Similarity=0.081 Sum_probs=176.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccccc
Q 002407 458 SIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSIN 537 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~ 537 (927)
....++|+|||++|+++ |++|++|++.+++....+..............+.++||+..++....+..+....
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~------ 89 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS------ 89 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSC------
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEc------
Confidence 35589999999999986 9999999999987654332111111111122367899999888875543221000
Q ss_pred ccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCce----
Q 002407 538 RKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS--HSDYV---- 610 (927)
Q Consensus 538 ~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~--h~~~V---- 610 (927)
......++++....+..+..|...+...+|||| ..|+.+ .++.|++|++.+++..+... +...+
T Consensus 90 --------~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~ 160 (740)
T 4a5s_A 90 --------YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGI 160 (740)
T ss_dssp --------EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESB
T ss_pred --------cceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCc
Confidence 001114667766666677888889999999999 456665 57899999999887655332 22222
Q ss_pred -------------EEEEEccCCCCEEEEEECCC------------------------------------cEEEEeCCC--
Q 002407 611 -------------TCIQFNPVDDRYFISGSLDA------------------------------------KVRIWSIPE-- 639 (927)
Q Consensus 611 -------------~~v~fsp~dg~~L~sgs~Dg------------------------------------~I~IWDl~t-- 639 (927)
..+.|+| |+++|+.++.|. .|++||+.+
T Consensus 161 ~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 161 TDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp CCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred ccccccchhcCCCcceEECC-CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 3489999 999999876332 488899988
Q ss_pred -C---cEEEecc------CCCcEEEEEECCCCCEEEEEECC----CeEEEEECCCCe----eeeecccccccccccCCCC
Q 002407 640 -R---QVVDWND------LHEMVTAACYTPDGQGALVGSYK----GSCHLYNTSENK----LQQKSPINLQNKKKRSHQR 701 (927)
Q Consensus 640 -~---~~v~~~~------~~~~V~sla~spdg~~l~tgs~D----g~I~IwDl~~~~----~~~~~~i~~~~~~~~~h~~ 701 (927)
+ +...... +...+..++|+|||+.++..... ..|++||+.+++ +.....+. ...+..
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-----~~~~~~ 314 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-----EMSTTG 314 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-----EECSSS
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-----eccCCc
Confidence 7 5554433 55679999999999976665432 369999999876 22221110 012333
Q ss_pred Ce-----EEEEEcCCCCcEEEEEE-CCC--cEEEEECCcce-EEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 702 KI-----TGFQFAPGSSSEVLVTS-ADS--RIRVVDGIDLV-HKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 702 ~V-----tsl~fspdg~~~Llsgs-~Dg--~I~VwD~~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.| ....|+|+|+.+++..+ .+| .|++||..... ..+. .....+..+. .+|++.|+..+.
T Consensus 315 ~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT--~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 315 WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT--KGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC--CSSSCEEEEE-EECSSEEEEEES
T ss_pred eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc--cCCEEEEEEE-EEeCCEEEEEEe
Confidence 33 36789999985442554 444 57778854322 2222 1233344433 244666655544
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.60 E-value=4e-13 Score=165.45 Aligned_cols=315 Identities=12% Similarity=0.100 Sum_probs=190.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCC-----CEEEEEEcCCCCEEEEEeCC---------CcEEEEecCcC
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNG-----SIWSIKFSLDGRYLASAGED---------CVIHVWQVVES 488 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~-----~I~~vafSpdG~~LaSgs~D---------gtVrVWdv~~~ 488 (927)
+++.+ ++.|++|+..+++...+ +.+|.. ....++|||||++||.++.+ +.+.|||+.++
T Consensus 30 ~~~~~--~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~ 102 (740)
T 4a5s_A 30 YLYKQ--ENNILVFNAEYGNSSVF-----LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR 102 (740)
T ss_dssp EEEEE--TTEEEEEETTTCCEEEE-----ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred EEEEc--CCcEEEEECCCCceEEE-----EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC
Confidence 44444 67999999888865433 355543 33458899999999999876 56679999988
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCC-
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHL- 567 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~- 567 (927)
+... + ..+...+...+|+|||..|+.... ..+.......... ..+ ...+.....+.++.
T Consensus 103 ~~~~-l-----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~~~~-~~l------------t~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 103 QLIT-E-----ERIPNNTQWVTWSPVGHKLAYVWN-NDIYVKIEPNLPS-YRI------------TWTGKEDIIYNGITD 162 (740)
T ss_dssp EECC-S-----SCCCTTEEEEEECSSTTCEEEEET-TEEEEESSTTSCC-EEC------------CSCCBTTTEEESBCC
T ss_pred cEEE-c-----ccCCCcceeeEECCCCCEEEEEEC-CeEEEEECCCCce-EEE------------cCCCCccceecCccc
Confidence 6433 2 233456889999999999988743 3343222111000 000 00111111222332
Q ss_pred --------CCEEEEEecCC-cEEEEEeCCC------------------------------------cEEEEeCCC---C-
Q 002407 568 --------DDVLDLSWSKS-QHLLSSSMDK------------------------------------TVRLWHLSS---K- 598 (927)
Q Consensus 568 --------~~V~~l~~spd-~~L~Sgs~Dg------------------------------------tV~lWDl~t---~- 598 (927)
+....+.|+|| .+|+.++.|. +|++||+.+ +
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS
T ss_pred ccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC
Confidence 12235889998 5677665321 588999998 7
Q ss_pred --cEEEEEe------cCCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCCc----EEEe-----ccCCCcE-----
Q 002407 599 --TCLKIFS------HSDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPERQ----VVDW-----NDLHEMV----- 652 (927)
Q Consensus 599 --~~~~~~~------h~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~~----~v~~-----~~~~~~V----- 652 (927)
+...... |...+..++|+| ++++++.... +..|.+||+.+++ +... ..+...+
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 4444332 677899999999 8887665543 2369999998876 2211 2233333
Q ss_pred EEEEECCCCCEEE-EEEC-CC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----CCc
Q 002407 653 TAACYTPDGQGAL-VGSY-KG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA----DSR 724 (927)
Q Consensus 653 ~sla~spdg~~l~-tgs~-Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~ 724 (927)
..+.|+|||+.|+ ..+. +| .|++||+.++..... ......+..+.. +++..+++++.. .+.
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l----------T~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI----------TKGTWEVIGIEA-LTSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES----------CCSSSCEEEEEE-ECSSEEEEEESCGGGCTTC
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec----------ccCCEEEEEEEE-EeCCEEEEEEecCCCCCce
Confidence 3688999999877 5553 33 588889887654432 123445555542 445545555544 234
Q ss_pred EEEE--ECCcceEE--EEee--cCCcceEEEEEecCCCEEEEEECC---CcEEEEECCCCC
Q 002407 725 IRVV--DGIDLVHK--FKGF--RNTNSQISASLTANGRYVVSASED---SYVYVWKYEAES 776 (927)
Q Consensus 725 I~Vw--D~~~~~~~--~~~~--~~~~~v~sv~fspdg~~Lasgs~D---g~I~IWdl~s~~ 776 (927)
..|| +....... +... ........+.|+|++++++..... ..+++++..+++
T Consensus 391 ~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 391 RNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp BEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred eEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 4554 44332221 1110 012457789999999987765543 358888877653
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.59 E-value=1.5e-13 Score=154.57 Aligned_cols=273 Identities=13% Similarity=0.105 Sum_probs=178.6
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEecCcCcccceeeccc
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE----------DCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~----------DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
.++.|.+|+..++++. .++..+..+ .|+|+|||++|+++.. +++|.+||+.+.+...++....
T Consensus 29 ~d~~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFL-----GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEE-----EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEE-----EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 4678999997766543 345666665 8999999999998863 6789999987765544431000
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
+ . ..+......++++|+
T Consensus 102 -----------------------------------------------------------~---~-~~~g~~p~~i~~spd 118 (361)
T 2oiz_A 102 -----------------------------------------------------------K---R-VQGLNYDGLFRQTTD 118 (361)
T ss_dssp -----------------------------------------------------------T---B-CCBCCCGGGEEECTT
T ss_pred -----------------------------------------------------------c---c-cccCCCcceEEECCC
Confidence 0 0 001223456889999
Q ss_pred -cEEEEEeC--CCcEEEEeCCCCcEEEE-EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEE------ecc
Q 002407 579 -QHLLSSSM--DKTVRLWHLSSKTCLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVD------WND 647 (927)
Q Consensus 579 -~~L~Sgs~--DgtV~lWDl~t~~~~~~-~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~------~~~ 647 (927)
++|+++.. +++|.+||+.+++.+.. +.+... ..+.+.|.....+++.+.||.+.+|++.. +++.. .+.
T Consensus 119 g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 119 GKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp SSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 56777663 68999999999998887 664432 33667784457888999999999999865 55541 112
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccc---cccCCCCCeEEEEEcCCCCcEEEEEE----
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNK---KKRSHQRKITGFQFAPGSSSEVLVTS---- 720 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~---~~~~h~~~Vtsl~fspdg~~~Llsgs---- 720 (927)
.......+.+++++..++..+.++.|.++|+..........+..... ...........++|+|++..++++..
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 22222234446778888888889999999997654321111100000 00000011123689999875555444
Q ss_pred ------CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 721 ------ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 721 ------~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
....|.+||............+. ...++|+|||++|++++. +.|.|||..++
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 13489999976554443333333 889999999999998887 99999999987
No 166
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.59 E-value=9.8e-13 Score=146.52 Aligned_cols=253 Identities=8% Similarity=0.061 Sum_probs=159.9
Q ss_pred ceEEEEeccCc--ccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCcCcccceeecccccCccccE
Q 002407 430 RVRVRQYGKSC--KDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG-EDCVIHVWQVVESERKGELLEKQEDGHLNML 506 (927)
Q Consensus 430 ~~~V~i~~~~s--~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs-~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v 506 (927)
.+.|.+|+... +++ .....+..+...+..+++ +|++|++++ .++.|.+|++.....+..+...
T Consensus 74 ~~~v~~~~~~~~~g~~---~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~--------- 139 (361)
T 3scy_A 74 QAAVSAFAFDKEKGTL---HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV--------- 139 (361)
T ss_dssp TCEEEEEEEETTTTEE---EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE---------
T ss_pred CCcEEEEEEeCCCCcE---EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee---------
Confidence 47888887654 333 223344556677888888 888888776 5889999999754432221100
Q ss_pred EEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCc-EEEEEe
Q 002407 507 LLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQ-HLLSSS 585 (927)
Q Consensus 507 ~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~-~L~Sgs 585 (927)
.... +........+...+.+++|+|++ +|++++
T Consensus 140 --~~~~--------------------------------------------g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 140 --IEFK--------------------------------------------GSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp --EECC--------------------------------------------CCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred --EEcc--------------------------------------------CCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 0000 00000001234457889999994 465554
Q ss_pred -CCCcEEEEeCCCCc-------E-------EEEEecCCceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEEEe--c-
Q 002407 586 -MDKTVRLWHLSSKT-------C-------LKIFSHSDYVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVDW--N- 646 (927)
Q Consensus 586 -~DgtV~lWDl~t~~-------~-------~~~~~h~~~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v~~--~- 646 (927)
.++.|++|++.... . .....+...+..++|+| ++++|+++. .++.|.+|++.++++... .
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence 58899999887543 1 11223566788999999 999887777 689999999987765321 1
Q ss_pred ---cCCCcEEEEEECCCCCEEEEEECC--CeEEEEECC--CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 647 ---DLHEMVTAACYTPDGQGALVGSYK--GSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 647 ---~~~~~V~sla~spdg~~l~tgs~D--g~I~IwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.+...+..++|+|||++|+++..+ +.|.+|++. +++......+ .. ...+..++|+|+++ +|+++
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~-------~~-g~~~~~~~~spdg~-~l~~~ 323 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ-------LT-GIHPRNFIITPNGK-YLLVA 323 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE-------EC-SSCCCEEEECTTSC-EEEEE
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe-------cC-CCCCceEEECCCCC-EEEEE
Confidence 122457899999999999777665 889999996 4443322111 12 45678999999998 55555
Q ss_pred E-CCCcEEEEE--CCcceEEEEe-ecCCcceEEEEEe
Q 002407 720 S-ADSRIRVVD--GIDLVHKFKG-FRNTNSQISASLT 752 (927)
Q Consensus 720 s-~Dg~I~VwD--~~~~~~~~~~-~~~~~~v~sv~fs 752 (927)
+ .++.|.+|+ .......... ..+...+.++.|.
T Consensus 324 ~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 324 CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 5 779999965 3332222221 1123456777775
No 167
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.57 E-value=1.5e-13 Score=154.15 Aligned_cols=285 Identities=9% Similarity=-0.041 Sum_probs=168.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccE--EEE
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNML--LLA 509 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v--~~v 509 (927)
.|.+|+..+++...+. .+|...+..+.|+|||++|+.++.++.|++||+.+++....+. .+...+ ...
T Consensus 61 ~l~~~d~~~g~~~~lt-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~~ 130 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLT-----EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-----VPAEWVGYGTW 130 (388)
T ss_dssp EEEEEETTTCEEEECC-----CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----CCTTEEEEEEE
T ss_pred eEEEEeCCCCceEEee-----eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-----chhhcccccce
Confidence 6788887776654333 5666666678899999999999999999999999876543321 111222 122
Q ss_pred ccCCCCCeecccccCCceeeecccccc-cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC-C-cEEEEEeC
Q 002407 510 NGSPEPTSLSPKHLDNHLEKKRRGRSI-NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK-S-QHLLSSSM 586 (927)
Q Consensus 510 ~~spd~~~la~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp-d-~~L~Sgs~ 586 (927)
..++++.+++.......-... ..... ...... ........++++.......+..+...+..+.|+| + ..|+....
T Consensus 131 ~~~~dg~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~ 208 (388)
T 3pe7_A 131 VANSDCTKLVGIEIRREDWVP-LTDWKKFHEFYF-TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHE 208 (388)
T ss_dssp EECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHGG-GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEEC
T ss_pred eECCCCCeeccccccCccccc-ccccchhhhhhc-cCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEe
Confidence 347888777642111000000 00000 000000 0000111345555556667777888899999999 8 55666665
Q ss_pred C------CcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEEC-CC----cEEEEeCCCCcEEEeccCCCc--
Q 002407 587 D------KTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSL-DA----KVRIWSIPERQVVDWNDLHEM-- 651 (927)
Q Consensus 587 D------gtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~-Dg----~I~IWDl~t~~~v~~~~~~~~-- 651 (927)
+ ..|.++|+..+.......+. ..+..++|+| +++.|+..+. ++ .|++||+.+++..........
T Consensus 209 ~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~ 287 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH 287 (388)
T ss_dssp SCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECT-TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE
T ss_pred cCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECC-CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee
Confidence 3 37888898877655544444 3588899999 8887755443 22 399999999875443322221
Q ss_pred ----EEEEEECCCCCEEEEE---------ECCCeEEEEECCCCeeeeecccccccc-cccCCCCCeEEEEEcCCCCcEEE
Q 002407 652 ----VTAACYTPDGQGALVG---------SYKGSCHLYNTSENKLQQKSPINLQNK-KKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 652 ----V~sla~spdg~~l~tg---------s~Dg~I~IwDl~~~~~~~~~~i~~~~~-~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
...++|+|||+.|+.. ..+..|++||+.+++............ ........+..++|+|+++.+++
T Consensus 288 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 288 LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 1113689999988764 445689999999887643211000000 00001114778899999986555
Q ss_pred EEECCCcEEEEE
Q 002407 718 VTSADSRIRVVD 729 (927)
Q Consensus 718 sgs~Dg~I~VwD 729 (927)
++..++...||.
T Consensus 368 ~s~~~g~~~l~~ 379 (388)
T 3pe7_A 368 TSDVHGKPALYL 379 (388)
T ss_dssp EECTTSSCEEEE
T ss_pred EecCCCceeEEE
Confidence 666677776664
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.56 E-value=8.1e-14 Score=156.16 Aligned_cols=277 Identities=12% Similarity=0.042 Sum_probs=171.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC---CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 456 NGSIWSIKFSLDGRYLASAGED---CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~D---gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
...+..++|+|||++||..... ..|.+|++.+++..... .........+.|+|++..|+....+..+.....
T Consensus 35 ~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~ 109 (396)
T 3c5m_A 35 RNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-----EGKGDNTFGGFISTDERAFFYVKNELNLMKVDL 109 (396)
T ss_dssp CCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-----CSSCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred ceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-----cCCCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence 3347788999999998877543 36888898876533221 111111222568999998877665544432221
Q ss_pred cccccccccccCcccccceEeecCCCceEEEccCCCCEEE-------------------EEecCC-cEEEEE-----eCC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLD-------------------LSWSKS-QHLLSS-----SMD 587 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~-------------------l~~spd-~~L~Sg-----s~D 587 (927)
.. ++....+..+...... +.|+|+ ..++.. ..+
T Consensus 110 ~~----------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 110 ET----------------------LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp TT----------------------CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred CC----------------------CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 11 1111111112221111 346666 333332 456
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEeccCC--CcEEEEEECC
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWNDLH--EMVTAACYTP 659 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~~~~--~~V~sla~sp 659 (927)
..|++||+.+++......+...+..+.|+|.++..|+..+.+ ..|.+||+.+++........ ..+..++|+|
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred ceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 789999999998877777888899999999446666665543 36889998877665555432 3588899999
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC-CCCcEEEEEE-------------
Q 002407 660 DGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVTS------------- 720 (927)
Q Consensus 660 dg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~~~Llsgs------------- 720 (927)
+|++|+.++.+ +.|++||+.+++....... . ... +.|+| ++. ++++++
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------~-~~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM----------P-PCS-HLMSNFDGS-LMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC----------C-SEE-EEEECSSSS-EEEEEECCC----------
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC----------C-CCC-CCccCCCCc-eEEEecCCcceeecccccc
Confidence 99988777554 4499999988765433211 1 123 88999 887 566544
Q ss_pred ---CCCcEEEEECCcc-eEEEEeecCCc---------ceEEEEEecCCCEEEEEEC-CCcEEEEEC
Q 002407 721 ---ADSRIRVVDGIDL-VHKFKGFRNTN---------SQISASLTANGRYVVSASE-DSYVYVWKY 772 (927)
Q Consensus 721 ---~Dg~I~VwD~~~~-~~~~~~~~~~~---------~v~sv~fspdg~~Lasgs~-Dg~I~IWdl 772 (927)
.+..|++||.... ...+..+.... .+..++|+|||++|+.++. ++...||.+
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 3478999996432 22333322110 2456789999999887765 455555544
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=1.7e-13 Score=165.69 Aligned_cols=298 Identities=11% Similarity=0.034 Sum_probs=186.9
Q ss_pred eEeecCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEecCcCcccceeecccccCc------cccEEEEccCCCCCe-ecc
Q 002407 450 QEIQAHNGSIWSIKFSLDGRYLASA--GEDCVIHVWQVVESERKGELLEKQEDGH------LNMLLLANGSPEPTS-LSP 520 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~~LaSg--s~DgtVrVWdv~~~~~~~~l~~~~~~~~------~~~v~~v~~spd~~~-la~ 520 (927)
+.+.+|...|..++|++++-++++. +.++...||....+.....+........ .........+||+.. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3457899999999999987777777 6688999999754443333321110000 000122233588877 665
Q ss_pred cccC-CceeeecccccccccccccCcccccceEeecC--C-CceEEEcc-----CCCCEEEEEecCC-cEEEEEeCC---
Q 002407 521 KHLD-NHLEKKRRGRSINRKSLSLDHMVVPETVFALS--D-KPICSFQG-----HLDDVLDLSWSKS-QHLLSSSMD--- 587 (927)
Q Consensus 521 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s--~-k~i~~l~g-----H~~~V~~l~~spd-~~L~Sgs~D--- 587 (927)
.... ..+ .++++. + .....+.. |...+..++|+|| +.|++++.+
T Consensus 97 ~~~~~~~l-----------------------~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 153 (662)
T 3azo_A 97 THFGDQRL-----------------------YAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG 153 (662)
T ss_dssp EBTTTCCE-----------------------EEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS
T ss_pred EECCCCeE-----------------------EEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccC
Confidence 4332 112 122223 2 33445555 6778899999999 678888876
Q ss_pred -------CcEEEEeCCC------CcEEEEE-ecCCceEEEEEccCCCCEEEEEECCC--------cEEEEeCC-CC---c
Q 002407 588 -------KTVRLWHLSS------KTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDA--------KVRIWSIP-ER---Q 641 (927)
Q Consensus 588 -------gtV~lWDl~t------~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg--------~I~IWDl~-t~---~ 641 (927)
..|++||+.+ ++..... .+...+..++|+| |+++|+.++.++ .|++||+. ++ +
T Consensus 154 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp SSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred CCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999998 6766655 5667888999999 999998887553 69999998 56 5
Q ss_pred EEEeccC-CCcEEEEEECCCCCEEEEEECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 642 VVDWNDL-HEMVTAACYTPDGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 642 ~v~~~~~-~~~V~sla~spdg~~l~tgs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
...+... ...+..++|+|||++++++..++ .|++||+.+++............ ...-...+..++|+|++. ++++
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~p~w~~~~~~~~~~~~~~-~~~~ 310 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA-GPLWTPGMRWFAPLANGL-IAVV 310 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS-CCCCSTTCCSEEECTTSC-EEEE
T ss_pred cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc-CccccccCceEeEeCCCE-EEEE
Confidence 5554443 57899999999999888887788 67777776666543321100000 000001155788999876 7777
Q ss_pred EECCCcEEEE--ECC-cceEEEEeecCCcceEEE-EEecCCCEEEEEECCC--cEEEEECCCCC
Q 002407 719 TSADSRIRVV--DGI-DLVHKFKGFRNTNSQISA-SLTANGRYVVSASEDS--YVYVWKYEAES 776 (927)
Q Consensus 719 gs~Dg~I~Vw--D~~-~~~~~~~~~~~~~~v~sv-~fspdg~~Lasgs~Dg--~I~IWdl~s~~ 776 (927)
+.. +.++|| |.. .....+.. +...+..+ +++.+.-++++++.+. .|++|++.++.
T Consensus 311 ~~~-~~~~l~~~d~~~~~~~~l~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 311 HGK-GAAVLGILDPESGELVDAAG--PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp EBS-SSCEEEEEETTTTEEEECCS--SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEc-CccEEEEEECCCCcEEEecC--CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 777 999999 543 22333322 33445555 4443333344455554 45556665553
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.53 E-value=2.6e-12 Score=142.11 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=173.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEecCcCcccceeecccccCccccEEEEcc
Q 002407 456 NGSIWSIKFSLDGRYLASAGED------------------------CVIHVWQVVESERKGELLEKQEDGHLNMLLLANG 511 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~D------------------------gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~ 511 (927)
-+.|.+|+|+|+|+++++...+ +.|.+||..+++....+ ..........+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----~~~~~~~p~gia~ 98 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----GKNLFYLPHGLSI 98 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE----CTTTCSSEEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc----CCCccCCceEEEE
Confidence 4679999999999999988877 47999999887765433 1234456678888
Q ss_pred CCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCC--ceEEE---------ccCCCCEEEEEecC-Cc
Q 002407 512 SPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDK--PICSF---------QGHLDDVLDLSWSK-SQ 579 (927)
Q Consensus 512 spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k--~i~~l---------~gH~~~V~~l~~sp-d~ 579 (927)
.+++.++++......+... +..++ .+..+ .++......|+++| ++
T Consensus 99 d~~g~l~v~d~~~~~v~~~-----------------------~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g 155 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKL-----------------------DPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG 155 (329)
T ss_dssp CTTSCEEEEETTTTEEEEE-----------------------CTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred CCCCCEEEEECCCCEEEEE-----------------------eCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence 9999888776665555332 22222 23333 34556789999999 65
Q ss_pred EEEEEe--CCCcEEEEeCCCCcEEEEEec-C----------CceEEEEEccCC-CCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 580 HLLSSS--MDKTVRLWHLSSKTCLKIFSH-S----------DYVTCIQFNPVD-DRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 580 ~L~Sgs--~DgtV~lWDl~t~~~~~~~~h-~----------~~V~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.|+.+. .++.|++|+ ..++.+..+.. . .....|+|+| + +.++++...++.|++|+..+++.+..
T Consensus 156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~-~~g~l~v~d~~~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVP-HLDQLCVADRENGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEEC-CCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 555444 589999999 56777777642 1 2388999999 6 77778888889999999998887765
Q ss_pred cc---CCCcEEEEEECCCCCEEEE-------EECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 646 ND---LHEMVTAACYTPDGQGALV-------GSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 646 ~~---~~~~V~sla~spdg~~l~t-------gs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+. ....+..++|+| +..+++ ...+..|++|++.+++.+..+.. ...+...+.+++++|++ .+
T Consensus 234 ~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------~~~~~~~p~~ia~~~dG-~l 305 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------VRKHFDMPHDIVASEDG-TV 305 (329)
T ss_dssp ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------SSSCCSSEEEEEECTTS-EE
T ss_pred EeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------CCCccCCeeEEEECCCC-CE
Confidence 53 345788999999 433333 23345899999999988766421 12566778999999998 57
Q ss_pred EEEEECCCcEEEEEC
Q 002407 716 VLVTSADSRIRVVDG 730 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~ 730 (927)
+++...++.|++|+.
T Consensus 306 yvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEESSSCCEEEEEE
T ss_pred EEEECCCCEEEEEeC
Confidence 888888999999984
No 171
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.51 E-value=2.9e-12 Score=143.68 Aligned_cols=199 Identities=10% Similarity=0.136 Sum_probs=138.2
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEeCC-CCcEEEEEecC--CceEEEEEccCCCCE--EEEEE-------------C
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWHLS-SKTCLKIFSHS--DYVTCIQFNPVDDRY--FISGS-------------L 628 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~-t~~~~~~~~h~--~~V~~v~fsp~dg~~--L~sgs-------------~ 628 (927)
..+..++|+|+ .+|++++.+ .|.+|++. +++......+. ..+.+++|+| ++++ ++++. .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence 35678999999 568888887 99999997 77766554432 3466789999 8884 44543 6
Q ss_pred CCcEEEEeCC-CCcEEEec-----cCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECC-CCeeeeecccccccccccCCC
Q 002407 629 DAKVRIWSIP-ERQVVDWN-----DLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 629 Dg~I~IWDl~-t~~~v~~~-----~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~ 700 (927)
++.+.+|++. ++++.... .....+..++|+|||++|+++.. ++.|++|++. +++......+. ...+.
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-----~~~~g 192 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD-----APDPG 192 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE-----CSSTT
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe-----cCCCC
Confidence 8999999997 46554322 23467999999999998888764 6799999998 66653221111 01235
Q ss_pred CCeEEEEEcCCCCcEEEEEE-CCCcEEEEECC----cce---EEEEeecCC----c-------ceEEEE-EecCCCEEEE
Q 002407 701 RKITGFQFAPGSSSEVLVTS-ADSRIRVVDGI----DLV---HKFKGFRNT----N-------SQISAS-LTANGRYVVS 760 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~----~~~---~~~~~~~~~----~-------~v~sv~-fspdg~~Las 760 (927)
..+..++|+|+++ +|+++. .++.|.+|+.. .+. ..+...... . .+..++ |+|||++|++
T Consensus 193 ~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v 271 (365)
T 1jof_A 193 DHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp CCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEE
Confidence 6789999999998 455555 57899999732 221 112211111 1 477899 9999999887
Q ss_pred EECCC------cEEEEECCC
Q 002407 761 ASEDS------YVYVWKYEA 774 (927)
Q Consensus 761 gs~Dg------~I~IWdl~s 774 (927)
+..+. .|.+|++..
T Consensus 272 ~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 272 SSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEESSTTSCCEEEEEEECT
T ss_pred ECCCCCCCCCCeEEEEEECC
Confidence 76432 899999963
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.51 E-value=2.7e-12 Score=141.61 Aligned_cols=268 Identities=10% Similarity=0.005 Sum_probs=161.2
Q ss_pred CceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCC---Cc--EEEEecCcCcccceeecccccCcc
Q 002407 429 ERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGED---CV--IHVWQVVESERKGELLEKQEDGHL 503 (927)
Q Consensus 429 ~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~D---gt--VrVWdv~~~~~~~~l~~~~~~~~~ 503 (927)
....|.+|+...++... | ..+..++|||||++||.++.+ +. |.+|++.+++...... ..
T Consensus 41 ~~~~l~~~d~~~~~~~~------l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~------~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRF------I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE------AK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEE------E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE------ES
T ss_pred ccceEEEEeCCCCceEE------c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc------CC
Confidence 36778888887665322 2 468899999999999988754 33 7777877654332211 11
Q ss_pred ccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEE
Q 002407 504 NMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLS 583 (927)
Q Consensus 504 ~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~S 583 (927)
. +..+.|+|++..|+....+..- .+ ....+..+.|..++.-+.
T Consensus 105 ~-~~~~~wspdg~~l~~~~~~~~~-----------------------------~~-------~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 105 N-IRSLEWNEDSRKLLIVGFKRRE-----------------------------DE-------DFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp E-EEEEEECTTSSEEEEEEECCCC---------------------------------------------CCCC-------
T ss_pred C-ccceeECCCCCEEEEEEccCCC-----------------------------cC-------CcEEEcccceeecCcccc
Confidence 2 6667777777766554221000 00 000011122222211111
Q ss_pred EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC-------cEEEEeCCCCcEEEeccCCCcEEEEE
Q 002407 584 SSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-------KVRIWSIPERQVVDWNDLHEMVTAAC 656 (927)
Q Consensus 584 gs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg-------~I~IWDl~t~~~v~~~~~~~~V~sla 656 (927)
......|++||+.+++.+..+... .+..++|+| ++ +++++..+. ...||.+.+++...+..+ ..+..+
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~- 222 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV- 222 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEEE-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE-
T ss_pred cCccceEEEEECCCCeEEeeecCC-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE-
Confidence 123457999999998874444434 889999999 88 777776542 334444446665554444 445444
Q ss_pred ECCCCCEEEEEECC--------CeEEEEECCCCeeeeecccccccccccCCCCCeEE-EEEcCCCCcEEEEEECCCcEEE
Q 002407 657 YTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG-FQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 657 ~spdg~~l~tgs~D--------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts-l~fspdg~~~Llsgs~Dg~I~V 727 (927)
+|+|++|+.++.+ ..|.+|| +++..... ..+...+.. +.|+ ++ ++++++.++.++|
T Consensus 223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~---------~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l 287 (347)
T 2gop_A 223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL---------DEVDRGVGQAKIKD-GK--VYFTLFEEGSVNL 287 (347)
T ss_dssp -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS---------TTCCSEEEEEEEET-TE--EEEEEEETTEEEE
T ss_pred -CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc---------ccCCcccCCccEEc-Cc--EEEEEecCCcEEE
Confidence 9999998887754 3688888 44433221 244566776 8998 65 7888899999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE-EEEECC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV-YVWKYE 773 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I-~IWdl~ 773 (927)
| ...... .........+..++|++ .++++++.++.. .||.+.
T Consensus 288 ~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 8 542211 12222356788999999 677787777765 777775
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=1.4e-12 Score=146.07 Aligned_cols=264 Identities=9% Similarity=-0.037 Sum_probs=157.8
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcc-ccEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHL-NMLLL 508 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~-~~v~~ 508 (927)
...|.+|+...++...+. .++...+..+.|+|||++|+.++.++.|++|++.+++.............. ..+..
T Consensus 59 ~~~l~~~d~~~~~~~~l~-----~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~ 133 (396)
T 3c5m_A 59 NRNYYLLNLETQQAVQLT-----EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVAN 133 (396)
T ss_dssp SCEEEEEETTTTEEEECC-----CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred CceEEEEECCCCcEEEee-----cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEe
Confidence 346777887666543221 223322334789999999999999999999999877643322101000000 00000
Q ss_pred -------------EccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEe
Q 002407 509 -------------ANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSW 575 (927)
Q Consensus 509 -------------v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~ 575 (927)
..++|++..++..... .........++++.......+..+...+..+.|
T Consensus 134 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~------------------~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 134 SDCTKLVGIEILKRDWQPLTSWEKFAEFY------------------HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp TTSSEEEEEEEEGGGCCCCCSHHHHHHHH------------------HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred ccCCccccccccccccCCCCcceeeeeec------------------cCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 2344554443332100 000000013344444444455567788999999
Q ss_pred cC-C-cEEEEEeCC------CcEEEEeCCCCcEEEEEec--CCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCC
Q 002407 576 SK-S-QHLLSSSMD------KTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPER 640 (927)
Q Consensus 576 sp-d-~~L~Sgs~D------gtV~lWDl~t~~~~~~~~h--~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~ 640 (927)
+| + +.|+..+.+ ..|.+||+..++......+ ...+..++|+| ++++|+.++.+ +.|++||+.++
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCEEEEEecCCCCccceEEEEECCCC
Confidence 99 6 556665543 4689999887665444443 23588899999 88877776554 44999999988
Q ss_pred cEEEeccCCCcEEEEEECC-CCCEEEEEE----------------CCCeEEEEECCCCeeeeecccccccccccCCCC--
Q 002407 641 QVVDWNDLHEMVTAACYTP-DGQGALVGS----------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQR-- 701 (927)
Q Consensus 641 ~~v~~~~~~~~V~sla~sp-dg~~l~tgs----------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~-- 701 (927)
+......... .. +.|+| +|+++++++ .+..|++||+.+++..... .+..
T Consensus 275 ~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~----------~~~~~~ 342 (396)
T 3c5m_A 275 ENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC----------KHSTSW 342 (396)
T ss_dssp CEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE----------ECCCCC
T ss_pred CeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc----------CCCCcc
Confidence 7655443333 33 89999 999888765 3478999999887643221 1111
Q ss_pred ---------CeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 702 ---------KITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 702 ---------~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.+..++|+|++..+++++..++...||.
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 2556789999985444444556555553
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.49 E-value=3e-11 Score=132.63 Aligned_cols=242 Identities=11% Similarity=0.039 Sum_probs=161.6
Q ss_pred EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeee
Q 002407 451 EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKK 530 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~ 530 (927)
.+..|...+.+++|+|+|++++++..++.|.+|+..+++....
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~------------------------------------- 81 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP------------------------------------- 81 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-------------------------------------
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-------------------------------------
Confidence 4566777889999999999888888899999999865431110
Q ss_pred cccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEe-CC----CcEEEEeCCCCcEEEEEe
Q 002407 531 RRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS-MD----KTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs-~D----gtV~lWDl~t~~~~~~~~ 605 (927)
+..+...+.+++|++++.|+.+. .+ +.|.+||..++.....+.
T Consensus 82 --------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 82 --------------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp --------------------------------EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred --------------------------------eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence 01234568899999996555544 44 589999999887654443
Q ss_pred ---cCCceEEEEEccCCCCEEEEEEC------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEE
Q 002407 606 ---HSDYVTCIQFNPVDDRYFISGSL------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHL 675 (927)
Q Consensus 606 ---h~~~V~~v~fsp~dg~~L~sgs~------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~I 675 (927)
+...+.+++++| +++++++... .+.|..|+..+++..........+..++|+|+|+.|+++ ..++.|.+
T Consensus 130 ~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 130 DLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp SSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 445789999999 8887776653 355777776666655444434568899999999866555 45789999
Q ss_pred EECCC-CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecC----CcceEEE
Q 002407 676 YNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRN----TNSQISA 749 (927)
Q Consensus 676 wDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~----~~~v~sv 749 (927)
||+.+ +.....+..... .....+ ..+..+++.+++. ++++...++.|.+||... ....+..... ...+..+
T Consensus 209 ~d~~~~g~~~~~~~~~~~-~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIP-YYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHP 285 (333)
T ss_dssp EEECTTSSSEEEEEEEEE-EECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEE
T ss_pred EEecCCCcCcccccceEE-EecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceE
Confidence 99964 332211100000 000111 4678899999886 666667789999999642 2333332211 1157789
Q ss_pred EEecCCCEEEEEECCC
Q 002407 750 SLTANGRYVVSASEDS 765 (927)
Q Consensus 750 ~fspdg~~Lasgs~Dg 765 (927)
+|++|++.|+.++.++
T Consensus 286 ~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 286 QFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECTTSCEEEEEEECG
T ss_pred EECCCCCEEEEEeCcc
Confidence 9999987776665553
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.48 E-value=3e-10 Score=121.75 Aligned_cols=280 Identities=6% Similarity=0.013 Sum_probs=188.3
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeec
Q 002407 452 IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKR 531 (927)
Q Consensus 452 L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~ 531 (927)
+..+...+.+|+++++|+++++...++.|.+|+.. +.. ..+. .......+..+.+.+++.++++....+.+....
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP---LPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec---CCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 34566789999999999988877668899999987 432 2221 111235567788888888777654444442221
Q ss_pred ccccccccccccCcccccceEeecCCCceEEE--ccCCCCEEEEEecCCcEEEEE-eCCCcEEEEeCCCCcEEEEEe--c
Q 002407 532 RGRSINRKSLSLDHMVVPETVFALSDKPICSF--QGHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIFS--H 606 (927)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l--~gH~~~V~~l~~spd~~L~Sg-s~DgtV~lWDl~t~~~~~~~~--h 606 (927)
..++ +..+ ..+...+..|++.+++.|+.+ ..++.|.+||. +++...... .
T Consensus 85 -----------------------~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 85 -----------------------KKGI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp -----------------------TTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred -----------------------CCCc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 1111 1111 124457889999998655554 46789999998 555443322 4
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeee
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQ 684 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~ 684 (927)
...+..+++.+ +++++++...++.|.+||. +++.... ......+..+++.++|.++++...++.|.+||. ++...
T Consensus 140 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 140 GSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp TCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 46789999999 8887777766789999998 7766543 223456889999999997776666889999999 66543
Q ss_pred eecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECC
Q 002407 685 QKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 685 ~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
. +.. ......+.++++.+++. ++++...++.|.+||.......+........+.++++ ++|+++++.. .
T Consensus 217 ~-~~~-------~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~ 285 (299)
T 2z2n_A 217 E-FKI-------PTPNARPHAITAGAGID-LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAME-C 285 (299)
T ss_dssp E-EEC-------SSTTCCEEEEEECSTTC-EEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-T
T ss_pred E-EEC-------CCCCCCceeEEECCCCC-EEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEec-C
Confidence 2 111 23456789999999875 5555557889999997443344433333456888999 8888777655 5
Q ss_pred CcEEEEECCCC
Q 002407 765 SYVYVWKYEAE 775 (927)
Q Consensus 765 g~I~IWdl~s~ 775 (927)
+.|..++..+.
T Consensus 286 ~~l~~~~~~~~ 296 (299)
T 2z2n_A 286 DKIGKLTLIKD 296 (299)
T ss_dssp TEEEEEEEC--
T ss_pred CcEEEEEcCcc
Confidence 67888877653
No 176
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.47 E-value=3.4e-11 Score=130.28 Aligned_cols=238 Identities=9% Similarity=0.017 Sum_probs=165.4
Q ss_pred eEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 450 QEIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 450 q~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
..+..+.....+++|+|+|+ +++++..++.|.+|+..++ ..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~------------------------------------ 62 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS------------------------------------ 62 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE------------------------------------
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE------------------------------------
Confidence 44556777889999999998 7888888999999997653 11
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe--
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS-- 605 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~-- 605 (927)
.+..+...+.++++++++.|+.+. .++.|.+||..+++......
T Consensus 63 ---------------------------------~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 109 (296)
T 3e5z_A 63 ---------------------------------PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF 109 (296)
T ss_dssp ---------------------------------EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE
T ss_pred ---------------------------------EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc
Confidence 112244567899999996555554 46899999998887655443
Q ss_pred ---cCCceEEEEEccCCCCEEEEE----E-------------CCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEE
Q 002407 606 ---HSDYVTCIQFNPVDDRYFISG----S-------------LDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGAL 665 (927)
Q Consensus 606 ---h~~~V~~v~fsp~dg~~L~sg----s-------------~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~ 665 (927)
....+..++++| +++++++. . ..+.|..++.. ++..........+..++|+|+++.++
T Consensus 110 ~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv 187 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLV 187 (296)
T ss_dssp TTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEE
Confidence 123567899999 99888873 2 13456666655 66655556667789999999999997
Q ss_pred EEECCCeEEEEECC-CCee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEeecC
Q 002407 666 VGSYKGSCHLYNTS-ENKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKGFRN 742 (927)
Q Consensus 666 tgs~Dg~I~IwDl~-~~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~ 742 (927)
+.+.++.|++|++. ++.+ .....+ ..+...+.++++.++|. +++ +. ++.|.+||... ....+.. +
T Consensus 188 ~~~~~~~i~~~~~~~~g~~~~~~~~~-------~~~~~~p~~i~~d~~G~-l~v-~~-~~~v~~~~~~g~~~~~~~~--~ 255 (296)
T 3e5z_A 188 SDTGDNATHRYCLNARGETEYQGVHF-------TVEPGKTDGLRVDAGGL-IWA-SA-GDGVHVLTPDGDELGRVLT--P 255 (296)
T ss_dssp EETTTTEEEEEEECSSSCEEEEEEEE-------CCSSSCCCSEEEBTTSC-EEE-EE-TTEEEEECTTSCEEEEEEC--S
T ss_pred EeCCCCeEEEEEECCCCcCcCCCeEe-------eCCCCCCCeEEECCCCC-EEE-Ec-CCeEEEECCCCCEEEEEEC--C
Confidence 77778999999997 4444 111111 12344567899999986 444 44 88999999643 3333333 2
Q ss_pred CcceEEEEE-ecCCCEEEEEECCCcEEEEECCC
Q 002407 743 TNSQISASL-TANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 743 ~~~v~sv~f-spdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.. +.+++| .++++.|++++.++ +.-++.++
T Consensus 256 ~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 256 QT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp SC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 33 788899 58999999888764 44555544
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.47 E-value=7.7e-12 Score=138.42 Aligned_cols=266 Identities=8% Similarity=0.004 Sum_probs=182.7
Q ss_pred ccCceEEEEeccCcccccceeeee-EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCcccc
Q 002407 427 GQERVRVRQYGKSCKDLTALYKCQ-EIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNM 505 (927)
Q Consensus 427 g~~~~~V~i~~~~s~~l~~l~~~q-~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~ 505 (927)
|..++.|..|+..++++....... .-.........|.+. +++++++...++.|.+||..+++.+.++
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i----------- 80 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI----------- 80 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-----------
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-----------
Confidence 345788999998877664322100 001122456788884 4555566666899999999876543332
Q ss_pred EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEe
Q 002407 506 LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSS 585 (927)
Q Consensus 506 v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs 585 (927)
. .......+++++++.|+.+.
T Consensus 81 ----------------------------------------------------------~-~~~~p~~i~~~~~g~lyv~~ 101 (328)
T 3dsm_A 81 ----------------------------------------------------------T-GFTSPRYIHFLSDEKAYVTQ 101 (328)
T ss_dssp ----------------------------------------------------------E-CCSSEEEEEEEETTEEEEEE
T ss_pred ----------------------------------------------------------C-CCCCCcEEEEeCCCeEEEEE
Confidence 0 12346678887877776666
Q ss_pred -CCCcEEEEeCCCCcEEEEEecCC------ceEEEEEccCCCCEEEEEE-CCCcEEEEeCCCCcEEEeccCCCcEEEEEE
Q 002407 586 -MDKTVRLWHLSSKTCLKIFSHSD------YVTCIQFNPVDDRYFISGS-LDAKVRIWSIPERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 586 -~DgtV~lWDl~t~~~~~~~~h~~------~V~~v~fsp~dg~~L~sgs-~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~ 657 (927)
.++.|.+||..+++....+.... ....|++ . ++.++++.. .++.|.+||+.+++++...........+++
T Consensus 102 ~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~ 179 (328)
T 3dsm_A 102 IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVM 179 (328)
T ss_dssp BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEE
T ss_pred CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEE
Confidence 89999999999999888777444 6677888 4 555555544 488999999999998877666666788999
Q ss_pred CCCCCEEEEEECC----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 658 TPDGQGALVGSYK----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 658 spdg~~l~tgs~D----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
+|+|+++++...+ +.|.+||..+++....+.+ ........++|+|++. .|+++.. .|.+
T Consensus 180 ~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~--------~~g~~p~~la~~~d~~-~lyv~~~--~v~~ 248 (328)
T 3dsm_A 180 DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF--------KLGDWPSEVQLNGTRD-TLYWINN--DIWR 248 (328)
T ss_dssp CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC--------CTTCCCEEEEECTTSC-EEEEESS--SEEE
T ss_pred cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec--------CCCCCceeEEEecCCC-EEEEEcc--EEEE
Confidence 9999877766554 7899999999887765432 2234688999999887 4555443 8999
Q ss_pred EECCcceEEEEe-ec-CCcceEEEEEec-CCCEEEEE----ECCCcEEEEECCCCCC
Q 002407 728 VDGIDLVHKFKG-FR-NTNSQISASLTA-NGRYVVSA----SEDSYVYVWKYEAESR 777 (927)
Q Consensus 728 wD~~~~~~~~~~-~~-~~~~v~sv~fsp-dg~~Lasg----s~Dg~I~IWdl~s~~~ 777 (927)
||.......... .. .......++++| ++.++++. ..++.|.+|+.. ++.
T Consensus 249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~ 304 (328)
T 3dsm_A 249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKL 304 (328)
T ss_dssp EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCE
T ss_pred EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCE
Confidence 996432211011 11 134577899999 55666665 578899999987 543
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.44 E-value=7.4e-12 Score=151.35 Aligned_cols=273 Identities=10% Similarity=0.003 Sum_probs=167.8
Q ss_pred cCceEEEEeccCcccccceeeeeEeecCCCCEE---------EEEEc--CCCCE-EEEEeC-CCcEEEEecC--cCcccc
Q 002407 428 QERVRVRQYGKSCKDLTALYKCQEIQAHNGSIW---------SIKFS--LDGRY-LASAGE-DCVIHVWQVV--ESERKG 492 (927)
Q Consensus 428 ~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~---------~vafS--pdG~~-LaSgs~-DgtVrVWdv~--~~~~~~ 492 (927)
..+++..+|...... ..+.|..|...|. ...|+ |||++ ||.++. +..|.+|++. ......
T Consensus 44 ~~~~~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~ 118 (662)
T 3azo_A 44 AEAGRATLVRRRADG-----AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR 118 (662)
T ss_dssp TTTTEEEEEEECTTS-----CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE
T ss_pred ccCCcEEEEEECCCC-----CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE
Confidence 345567777642111 1244566766666 66665 99998 776654 4556666654 202233
Q ss_pred eeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCC------CceEEEc-c
Q 002407 493 ELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSD------KPICSFQ-G 565 (927)
Q Consensus 493 ~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~------k~i~~l~-g 565 (927)
.+.......+...+..++|+||+..|+....+..- .. .........++++.+ .....+. .
T Consensus 119 ~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~----~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~ 185 (662)
T 3azo_A 119 PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTG----EG---------PSDVRRFLAAVPLDGSAAADRSAVRELSDD 185 (662)
T ss_dssp ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECS----SS---------TTCEEEEEEEEETTSTTTTCGGGSEESSCS
T ss_pred eccCCccCCCCccccCcEECCCCCEEEEEEecccC----CC---------CCCceeEEEEEECCCCccccCCceeEEEec
Confidence 33211111144567789999999988876543100 00 000000113445544 4455566 6
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC--------CcEEEEeCC-CC---cEEEEEe-cCCceEEEEEccCCCCEEEEEECCC-
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD--------KTVRLWHLS-SK---TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA- 630 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D--------gtV~lWDl~-t~---~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg- 630 (927)
+...+..++|+|| .+|+.++.+ ..|++||+. ++ +...... |...+..+.|+| ++++++++..++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~ 264 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGW 264 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTTSS
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCCCC
Confidence 6678888999999 567777654 379999999 56 4444444 578899999999 888888888888
Q ss_pred -cEEEEeCCCCcEEEeccCCCc---------EEEEEECCCCCEEEEEECCCeEEEE--ECCCCeeeeecccccccccccC
Q 002407 631 -KVRIWSIPERQVVDWNDLHEM---------VTAACYTPDGQGALVGSYKGSCHLY--NTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 631 -~I~IWDl~t~~~v~~~~~~~~---------V~sla~spdg~~l~tgs~Dg~I~Iw--Dl~~~~~~~~~~i~~~~~~~~~ 698 (927)
.|.+||+.+++......++.. +..++|+|++++++++.. +.++|| |+.+++. ..+ ..
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l---------~~ 333 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDA---------AG 333 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EEC---------CS
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEe---------cC
Confidence 577777777877665554322 467899999999999998 998888 6665653 222 24
Q ss_pred CCCCeEEEEEcCCCCcEEEEE-ECCC--cEEEEECC
Q 002407 699 HQRKITGFQFAPGSSSEVLVT-SADS--RIRVVDGI 731 (927)
Q Consensus 699 h~~~Vtsl~fspdg~~~Llsg-s~Dg--~I~VwD~~ 731 (927)
+...+..+. ++++..+++++ +.+. .|.+||..
T Consensus 334 ~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 334 PWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp SCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETT
T ss_pred CCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 455666661 44444444444 4444 45555643
No 179
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.43 E-value=2.2e-11 Score=129.30 Aligned_cols=197 Identities=6% Similarity=0.009 Sum_probs=142.9
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN- 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~- 646 (927)
.+.+|++.+++.|+.+..++.|.+||........... ....+..+++.| +++++++...++.|.+|+..+.......
T Consensus 68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~ 146 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPF 146 (270)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCC
T ss_pred CcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeecc
Confidence 4567888888656666558899999988765433221 336789999999 8888777777889999987665443322
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.....+..++++++|+++++...++.|.+||.......... ......+.++++.+++. ++++...++.|.
T Consensus 147 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~ 216 (270)
T 1rwi_B 147 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---------FTDITAPWGIAVDEAGT-VYVTEHNTNQVV 216 (270)
T ss_dssp CSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---------CSSCCSEEEEEECTTCC-EEEEETTTSCEE
T ss_pred ccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---------ccCCCCceEEEECCCCC-EEEEECCCCcEE
Confidence 22246788999999997777777889999998876543321 12336789999999884 666667788999
Q ss_pred EEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 727 VVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 727 VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+||................+..++++++|+++++...++.|++|++...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 217 KLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99965433222222233567899999999988888899999999987644
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.42 E-value=4.9e-10 Score=133.35 Aligned_cols=269 Identities=12% Similarity=0.131 Sum_probs=184.1
Q ss_pred eEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC--cCcccceeeccccc
Q 002407 423 VSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVV--ESERKGELLEKQED 500 (927)
Q Consensus 423 ~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~--~~~~~~~l~~~~~~ 500 (927)
++++...++.|.+++..++++...+ . ....+..+.|+|||++|++++.|+.|.+||+. +.+.+.++
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i-----~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i------ 236 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVL-----D-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI------ 236 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEE-----E-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE------
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEE-----e-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE------
Confidence 3455566788999998877654332 2 22356789999999999999999999999985 43322221
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEec----
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWS---- 576 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~s---- 576 (927)
.. ......++|+
T Consensus 237 ---------------------------------------------------------------~~-G~~P~~ia~s~~~~ 252 (567)
T 1qks_A 237 ---------------------------------------------------------------KI-GSEARSIETSKMEG 252 (567)
T ss_dssp ---------------------------------------------------------------EC-CSEEEEEEECCSTT
T ss_pred ---------------------------------------------------------------ec-CCCCceeEEccccC
Confidence 11 1124578899
Q ss_pred CC-cEEEEEe-CCCcEEEEeCCCCcEEEEEec------------CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 577 KS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH------------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 577 pd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h------------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
|+ +++++++ .+++|.|+|..+.+.++++.- ...+..+.+++....+++.....|.|.++|..+.+.
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 57 5665554 569999999999999888752 125788889884455556666679999999887543
Q ss_pred E--EeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeeccc-ccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 643 V--DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPI-NLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 643 v--~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i-~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
+ ...........+.|+|+|++|+++. .++.|.++|+.++++.....+ . ...|...-..+ ++|++..++++
T Consensus 333 ~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg-----~~Phpg~g~~~-~~p~~g~v~~t 406 (567)
T 1qks_A 333 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG-----QTPHPGRGANF-VHPTFGPVWAT 406 (567)
T ss_dssp EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SSBCCTTCEEE-EETTTEEEEEE
T ss_pred ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC-----cCCCCccceee-ECCCCCcEEEe
Confidence 2 2334455677899999999988776 478899999999987766432 1 12344322223 67875544444
Q ss_pred EE-CCCcEEEEECCc---------ceEEEEeecCCcceEEEEEecCCCEEEEEEC-------CCcEEEEECCCC
Q 002407 719 TS-ADSRIRVVDGID---------LVHKFKGFRNTNSQISASLTANGRYVVSASE-------DSYVYVWKYEAE 775 (927)
Q Consensus 719 gs-~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~-------Dg~I~IWdl~s~ 775 (927)
+. .++.|.++|... .+..+.... ..-..+.++|++++|.+... ...|.|+|+.+.
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 43 568999999643 344444332 22234678999999988763 358999999876
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=2.1e-11 Score=149.30 Aligned_cols=239 Identities=12% Similarity=0.117 Sum_probs=161.1
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGEDC-----VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~Dg-----tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+|...+..++|||||++||.+..++ .|+|||+.+++......
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~--------------------------------- 168 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--------------------------------- 168 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------------------
Confidence 4666789999999999999876543 89999998776432210
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCc----------------EE
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT----------------VR 591 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dgt----------------V~ 591 (927)
. + ..+..++|+|| ..|+.++.++. |+
T Consensus 169 -----------------------------------~-~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 169 -----------------------------------E-R-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp -----------------------------------E-E-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred -----------------------------------c-C-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 0 0 01345667776 45666666554 99
Q ss_pred EEeCCCCcE--EEEEe---cCCceEEEEEccCCCCEEEEEEC-----CCcEEEEeCCC------C--cEEEeccCCCcEE
Q 002407 592 LWHLSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSL-----DAKVRIWSIPE------R--QVVDWNDLHEMVT 653 (927)
Q Consensus 592 lWDl~t~~~--~~~~~---h~~~V~~v~fsp~dg~~L~sgs~-----Dg~I~IWDl~t------~--~~v~~~~~~~~V~ 653 (927)
+|++.+++. ...+. +...+..+.|+| ++++|+..+. +..|++||+.+ + ....+..+...+.
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY 290 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred EEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE
Confidence 999998763 23333 455688999999 9998887765 56799999976 4 3444555554444
Q ss_pred EEEECCCCCEEEEEECC----CeEEEEECCCCee--eeecccccccccccCCC--CCeEEEEEcCCCCcEEEEEECCCc-
Q 002407 654 AACYTPDGQGALVGSYK----GSCHLYNTSENKL--QQKSPINLQNKKKRSHQ--RKITGFQFAPGSSSEVLVTSADSR- 724 (927)
Q Consensus 654 sla~spdg~~l~tgs~D----g~I~IwDl~~~~~--~~~~~i~~~~~~~~~h~--~~Vtsl~fspdg~~~Llsgs~Dg~- 724 (927)
. .|+|+|+.|+..+.. +.|.+||+.++.. ...+ ..+. ..+..+.|.+++ .++++...++.
T Consensus 291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~ 359 (710)
T 2xdw_A 291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL---------VPEHEKDVLEWVACVRSN-FLVLCYLHDVKN 359 (710)
T ss_dssp E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---------ECCCSSCEEEEEEEETTT-EEEEEEEETTEE
T ss_pred E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec---------cCCCCCCeEEEEEEEcCC-EEEEEEEECCEE
Confidence 4 588999988877664 3599999987642 1111 1222 357888998654 47777778875
Q ss_pred -EEEEECC--cceEEEEeecCCcceEEEEEecCCCEEEEE-E---CCCcEEEEECCCCC
Q 002407 725 -IRVVDGI--DLVHKFKGFRNTNSQISASLTANGRYVVSA-S---EDSYVYVWKYEAES 776 (927)
Q Consensus 725 -I~VwD~~--~~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s---~Dg~I~IWdl~s~~ 776 (927)
|.+||.. .....+..+ ...+..++++|++..|+.. + ..+.|++||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5666752 233444433 5567888999998766533 2 35789999998765
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.42 E-value=6e-12 Score=153.75 Aligned_cols=240 Identities=12% Similarity=0.068 Sum_probs=161.6
Q ss_pred ecCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEecCcCccc-ceeecccccCccccEEEEccCCCCCeecccccCCc
Q 002407 453 QAHNGSIWSIKFSLDGRYLA-----SAGEDCVIHVWQVVESERK-GELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNH 526 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~La-----Sgs~DgtVrVWdv~~~~~~-~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~ 526 (927)
.+|...+..++|||||++|| .|+.+.+|+|||+.+++.. ...
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~-------------------------------- 164 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV-------------------------------- 164 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC--------------------------------
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc--------------------------------
Confidence 36777899999999999999 4455678999999887532 100
Q ss_pred eeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCc-------------EEE
Q 002407 527 LEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKT-------------VRL 592 (927)
Q Consensus 527 i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dgt-------------V~l 592 (927)
+... ....++|+|| ..|+.++.|.. |++
T Consensus 165 ------------------------------------~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~ 206 (695)
T 2bkl_A 165 ------------------------------------IEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRY 206 (695)
T ss_dssp ------------------------------------BSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEE
T ss_pred ------------------------------------cCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEE
Confidence 0000 0135788888 56777877766 999
Q ss_pred EeCCCCcE--EEEEe---cCCceEEEEEccCCCCEEEEEECCC----cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCE
Q 002407 593 WHLSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSLDA----KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQG 663 (927)
Q Consensus 593 WDl~t~~~--~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg----~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~ 663 (927)
|++.+++. ..++. +...+..+.|+| ++++|+..+.++ .|.+|+..+++...+..+...+....+ ++|.
T Consensus 207 ~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~- 283 (695)
T 2bkl_A 207 HTLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR- 283 (695)
T ss_dssp EETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-
T ss_pred EECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-
Confidence 99998862 33333 456789999999 999888877666 688888777766666666656666666 6676
Q ss_pred EEEEEC----CCeEEEEECCCCee---eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE--CC-cc
Q 002407 664 ALVGSY----KGSCHLYNTSENKL---QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI-DL 733 (927)
Q Consensus 664 l~tgs~----Dg~I~IwDl~~~~~---~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--~~-~~ 733 (927)
|+..+. ++.|.+||+.++.. ..... ......+..++|. + ..++++...|+..+||. .. ..
T Consensus 284 l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~--------~~~~~~l~~~~~~-~-~~lv~~~~~dg~~~l~~~~~~g~~ 353 (695)
T 2bkl_A 284 FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP--------EDSSASLLSVSIV-G-GHLSLEYLKDATSEVRVATLKGKP 353 (695)
T ss_dssp EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC--------CCSSCEEEEEEEE-T-TEEEEEEEETTEEEEEEEETTCCE
T ss_pred EEEEECCCCCCCEEEEEeCCCCCccCCeEEec--------CCCCCeEEEEEEE-C-CEEEEEEEECCEEEEEEEeCCCCe
Confidence 555544 57899999987642 11110 1124457888887 3 34788888899888875 22 22
Q ss_pred eEEEEeecCCcceEEEEEecCCCEEEEEE----CCCcEEEEECCCCC
Q 002407 734 VHKFKGFRNTNSQISASLTANGRYVVSAS----EDSYVYVWKYEAES 776 (927)
Q Consensus 734 ~~~~~~~~~~~~v~sv~fspdg~~Lasgs----~Dg~I~IWdl~s~~ 776 (927)
...+.. .....+..++++|+++.|+... ..+.|++||+.+++
T Consensus 354 ~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 354 VRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred eEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 222221 1244566778899998776332 35789999998765
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.39 E-value=1.1e-10 Score=128.57 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=123.4
Q ss_pred CEEEEEecCC-cEEEEEeCC---C--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC-------------
Q 002407 569 DVLDLSWSKS-QHLLSSSMD---K--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD------------- 629 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~D---g--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D------------- 629 (927)
.+..+.|+|+ .+|+..+.+ + .|.+|++.+++......+.. +..++|+| +++.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECT-TSSEEEEEEECCCC---------C
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEccc
Confidence 4677899998 567766543 2 48888999888777766555 99999999 99988887642
Q ss_pred --------------CcEEEEeCCCCcE-EEeccCCCcEEEEEECCCCCEEEEEECCC-------eEEEEECCCCeeeeec
Q 002407 630 --------------AKVRIWSIPERQV-VDWNDLHEMVTAACYTPDGQGALVGSYKG-------SCHLYNTSENKLQQKS 687 (927)
Q Consensus 630 --------------g~I~IWDl~t~~~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg-------~I~IwDl~~~~~~~~~ 687 (927)
..|.+||+.+++. ..+.. . .+..++|+|+| +++++..++ ...||.+.+++.....
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~ 214 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMF 214 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEec
Confidence 5699999998887 33333 3 78899999999 777776542 3344443344432221
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECC--------CcEEEEECCcceEEEEeecCCcceEE-EEEecCCCEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD--------SRIRVVDGIDLVHKFKGFRNTNSQIS-ASLTANGRYV 758 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D--------g~I~VwD~~~~~~~~~~~~~~~~v~s-v~fspdg~~L 758 (927)
.+ ..+..+ +|+|.. |+.++.+ ..|.+|| ......+ ...+...+.. +.|+ |+ ++
T Consensus 215 ----------~~-~~~~~~--spdg~~-l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l-~~~~~~~~~~~~~~s-dg-~~ 276 (347)
T 2gop_A 215 ----------EK-VSFYAV--DSDGER-ILLYGKPEKKYMSEHNKLYIYD-GKEVMGI-LDEVDRGVGQAKIKD-GK-VY 276 (347)
T ss_dssp ----------EE-ESEEEE--EECSSC-EEEEECCSSSCCCSSCEEEEEC-SSCEEES-STTCCSEEEEEEEET-TE-EE
T ss_pred ----------cC-cceeeE--CCCCCE-EEEEEccccCCccccceEEEEC-CCceEec-cccCCcccCCccEEc-Cc-EE
Confidence 22 344444 899884 5554433 4788888 3222221 1223455665 8999 88 99
Q ss_pred EEEECCCcEEEEECCC
Q 002407 759 VSASEDSYVYVWKYEA 774 (927)
Q Consensus 759 asgs~Dg~I~IWdl~s 774 (927)
++++.++.++|| +.+
T Consensus 277 ~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 277 FTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEEEETTEEEEE-EES
T ss_pred EEEecCCcEEEE-EcC
Confidence 999999999999 873
No 184
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.39 E-value=1.1e-10 Score=125.28 Aligned_cols=227 Identities=11% Similarity=0.136 Sum_probs=151.6
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEE-cCCCCEEEEEeC-CCcEEEEecCcCcccceeecccc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKF-SLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vaf-SpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.+.++...+++|.+|+...+.+..+.....-.+|...+..|++ .++++++++... ++.|++|+ .+++....+.
T Consensus 42 ~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~---- 116 (286)
T 1q7f_A 42 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG---- 116 (286)
T ss_dssp CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC----
T ss_pred CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec----
Confidence 4555556788999998764322111100011245678999999 577877766643 88999999 4555444331
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc--cCCCCEEEEEecC
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--GHLDDVLDLSWSK 577 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--gH~~~V~~l~~sp 577 (927)
.........+++.+++.++++....+.+. +++..++.+..+. ++...+..|++++
T Consensus 117 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~-----------------------~~~~~g~~~~~~~~~~~~~~p~~i~~~~ 173 (286)
T 1q7f_A 117 ATILQHPRGVTVDNKGRIIVVECKVMRVI-----------------------IFDQNGNVLHKFGCSKHLEFPNGVVVND 173 (286)
T ss_dssp TTTCSCEEEEEECTTSCEEEEETTTTEEE-----------------------EECTTSCEEEEEECTTTCSSEEEEEECS
T ss_pred CccCCCceEEEEeCCCCEEEEECCCCEEE-----------------------EEcCCCCEEEEeCCCCccCCcEEEEECC
Confidence 12334567788888888777655444442 2333344444443 4556789999999
Q ss_pred CcEEE-EEeCCCcEEEEeCCCCcEEEEEec---CCceEEEEEccCCCCEEEEEECCC-cEEEEeCCCCcEEEecc-C--C
Q 002407 578 SQHLL-SSSMDKTVRLWHLSSKTCLKIFSH---SDYVTCIQFNPVDDRYFISGSLDA-KVRIWSIPERQVVDWND-L--H 649 (927)
Q Consensus 578 d~~L~-Sgs~DgtV~lWDl~t~~~~~~~~h---~~~V~~v~fsp~dg~~L~sgs~Dg-~I~IWDl~t~~~v~~~~-~--~ 649 (927)
++.|+ +...++.|++||.. ++.+..+.. ...+..|+++| +++++++...++ .|.+||.. ++.+..+. + .
T Consensus 174 ~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 174 KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISALESKVKH 250 (286)
T ss_dssp SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCC
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCC
Confidence 96554 44568999999974 556666652 36789999999 888888887776 99999965 44443332 2 2
Q ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 650 EMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
..+..++++|+|+++++ +.++.|++|++..
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 35789999999986666 6799999998754
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.38 E-value=6.7e-10 Score=132.16 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=150.7
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC--CCcEEEeccCCCcEEEEEE
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ERQVVDWNDLHEMVTAACY 657 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~--t~~~v~~~~~~~~V~sla~ 657 (927)
.+++...+++|.++|..+++.+..+.....+..+.|+| +++++++++.|+.|.+||+. +++++...........++|
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 45667778999999999999999998777788999999 99999999999999999996 7777776666667889999
Q ss_pred C----CCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccc-cccCC-CCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 658 T----PDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNK-KKRSH-QRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 658 s----pdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~-~~~~h-~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+ |||++++++.. ++.|.++|..+.+.+..+.+..... ....| ...+..+.++++++.+++.....|.|.++|.
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 9 69999888765 5899999999988877654321000 00012 2368889999988866777777899999996
Q ss_pred Ccce-EEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCCC
Q 002407 731 IDLV-HKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAESR 777 (927)
Q Consensus 731 ~~~~-~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~~ 777 (927)
.... ..............+.|+|+|++|+++. .++.|.++|+.+++.
T Consensus 328 ~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl 376 (567)
T 1qks_A 328 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 376 (567)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence 5431 1112222344567889999999987766 578899999998754
No 186
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.36 E-value=2.3e-10 Score=125.65 Aligned_cols=205 Identities=12% Similarity=0.127 Sum_probs=148.2
Q ss_pred CceEEEccCCCCEEEEEecCCcEE-EEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECC----Cc
Q 002407 558 KPICSFQGHLDDVLDLSWSKSQHL-LSSSMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLD----AK 631 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd~~L-~Sgs~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~D----g~ 631 (927)
+....+..+...+.+++|++++.| +++..++.|.+||..+++..... .+...+.+++|+| +++++++...+ +.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCE
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCce
Confidence 455566777778899999998555 46778899999999988876655 4677899999999 88887777666 68
Q ss_pred EEEEeCCCCcEEEec---cCCCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeeecccccccccccCCCCC
Q 002407 632 VRIWSIPERQVVDWN---DLHEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK 702 (927)
Q Consensus 632 I~IWDl~t~~~v~~~---~~~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~ 702 (927)
|.+||..++...... .....+..++++|+|+++++... .+.|..||..+++..... .....
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~ 183 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII----------QNISV 183 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE----------EEESS
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee----------cCCCc
Confidence 999999887765332 23357899999999987776553 356777776655443221 12234
Q ss_pred eEEEEEcCCCCcEEEEEECCCcEEEEECCc---ceEEE-----EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 703 ITGFQFAPGSSSEVLVTSADSRIRVVDGID---LVHKF-----KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 703 Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~---~~~~~-----~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
+..++|+|++..++++...++.|.+||... ....+ ........+..++++++|+++++...++.|++|+.+
T Consensus 184 ~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 184 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 788999999875555566788999999632 22221 111112356789999999988888888999999974
No 187
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.36 E-value=3.2e-10 Score=122.86 Aligned_cols=248 Identities=9% Similarity=0.096 Sum_probs=168.2
Q ss_pred ecCCCCEEEEEEcCCCCEEEE-------EeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 453 QAHNGSIWSIKFSLDGRYLAS-------AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaS-------gs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
...-....+++|+++|.++++ +..++.|.+|+..+++... +.
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~------------------------------ 62 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-IC------------------------------ 62 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EE------------------------------
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EE------------------------------
Confidence 334456789999999998888 5678899999876554210 00
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEE-
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKI- 603 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~- 603 (927)
. ....++...+..++++++ +.|+.+.....|.+||.. ++....
T Consensus 63 -----------------------------~-----~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~ 107 (314)
T 1pjx_A 63 -----------------------------K-----PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIA 107 (314)
T ss_dssp -----------------------------C-----CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECC
T ss_pred -----------------------------e-----cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEE
Confidence 0 000123456888999999 888877776789999998 766544
Q ss_pred Ee-----cCCceEEEEEccCCCCEEEEEECC---------------CcEEEEeCCCCcEEEeccCCCcEEEEEEC----C
Q 002407 604 FS-----HSDYVTCIQFNPVDDRYFISGSLD---------------AKVRIWSIPERQVVDWNDLHEMVTAACYT----P 659 (927)
Q Consensus 604 ~~-----h~~~V~~v~fsp~dg~~L~sgs~D---------------g~I~IWDl~t~~~v~~~~~~~~V~sla~s----p 659 (927)
.. ....+.++++.+ +++++++...+ +.|..|+.. ++.............++|+ |
T Consensus 108 ~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~ 185 (314)
T 1pjx_A 108 KKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDG 185 (314)
T ss_dssp SBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTS
T ss_pred eccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCC
Confidence 32 124588999999 88877776554 567777766 6655444444567889999 9
Q ss_pred CCCEEEEE-ECCCeEEEEECC-CCeeeeecccccccccccCCC-CCeEEEEEcCCCCcEEEEEECCCcEEEEECC--cce
Q 002407 660 DGQGALVG-SYKGSCHLYNTS-ENKLQQKSPINLQNKKKRSHQ-RKITGFQFAPGSSSEVLVTSADSRIRVVDGI--DLV 734 (927)
Q Consensus 660 dg~~l~tg-s~Dg~I~IwDl~-~~~~~~~~~i~~~~~~~~~h~-~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~--~~~ 734 (927)
+++.|+++ ..++.|.+||+. ++.......+. ....+. ..+..+++.+++. ++++...++.|.+||.. ...
T Consensus 186 dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~----~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG----HIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE----ECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSCS
T ss_pred CCCEEEEEECCCCeEEEEECCCCCccccceEEE----ECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcEe
Confidence 99766665 457899999986 44432111100 011222 5578899999885 66666788999999965 333
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEE-EECCCcEEEEECCCC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVS-ASEDSYVYVWKYEAE 775 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Las-gs~Dg~I~IWdl~s~ 775 (927)
..+.. ....+.+++|+++|++|+. ...++.|..|++...
T Consensus 261 ~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 261 MRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 44433 3356889999999995554 445688999998764
No 188
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.34 E-value=2.5e-10 Score=128.16 Aligned_cols=235 Identities=11% Similarity=0.058 Sum_probs=144.6
Q ss_pred EEEecCC-cEEEEEe----------CCCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEEC--CCc
Q 002407 572 DLSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGSL--DAK 631 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs----------~DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs~--Dg~ 631 (927)
.++|+|+ ++|+++. .+++|.+||+.+.+.+..+.. ......++|+| ++++|+++.. ++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~ 132 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATS 132 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCe
Confidence 6889998 5666665 367899999999998887762 24577899999 9999998864 578
Q ss_pred EEEEeCCCCcEEEe-ccCCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEE
Q 002407 632 VRIWSIPERQVVDW-NDLHEMVTAACYTPDG-QGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 632 I~IWDl~t~~~v~~-~~~~~~V~sla~spdg-~~l~tgs~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
|.+||+.+++++.. +..... ..+.+.|++ ..+++.+.||.+.+|++.. ++....... .........++ .+.+
T Consensus 133 v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~---~~~~~~~~~~~-~~~~ 207 (361)
T 2oiz_A 133 IGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS---KQMFSVKDDPI-FIAP 207 (361)
T ss_dssp EEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC---CCCSCTTTSCB-CSCC
T ss_pred EEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc---cceEcCCCCce-EEEe
Confidence 99999999998877 665543 335677866 6788889999999999865 444311100 00001111121 2234
Q ss_pred cCCCCcEEEEEECCCcEEEEECCcc----eEEEEeec----CC----cceEEEEEecCCCEEEEEEC-----------CC
Q 002407 709 APGSSSEVLVTSADSRIRVVDGIDL----VHKFKGFR----NT----NSQISASLTANGRYVVSASE-----------DS 765 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~----~~----~~v~sv~fspdg~~Lasgs~-----------Dg 765 (927)
.+++. .++..+.++.|.++|.... ...+.... .. .....++|+|++++++++.. .+
T Consensus 208 ~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 208 ALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp EECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred cccCC-EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 56665 5566678899999996421 11111110 00 00112689999888877653 34
Q ss_pred cEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCCceeEEeecC
Q 002407 766 YVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQD 815 (927)
Q Consensus 766 ~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d 815 (927)
.|.+||+.+.+......... .....+++++..+.+...+.+.+|+...
T Consensus 287 ~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t 334 (361)
T 2oiz_A 287 EIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQ 334 (361)
T ss_dssp EEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSS
T ss_pred eEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCC
Confidence 79999998876544432222 2223444443333333224444444333
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=4.6e-09 Score=112.40 Aligned_cols=278 Identities=8% Similarity=0.024 Sum_probs=183.6
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecc
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRR 532 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~ 532 (927)
......+.+|++.++|+++++...++.|.+|+.. ++.. .+. .......+..+...+++.++++....+.+...
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~---~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~-- 88 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFE---VPTPDAKVMCLIVSSLGDIWFTENGANKIGKL-- 88 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE---CSSTTCCEEEEEECTTSCEEEEETTTTEEEEE--
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEE---CCCCCCcceeEEECCCCCEEEEecCCCeEEEE--
Confidence 4456789999999999988877778999999987 4322 221 11223456677777888776665434433221
Q ss_pred cccccccccccCcccccceEeecCCCce-EEEccCCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEE-Ee-cCC
Q 002407 533 GRSINRKSLSLDHMVVPETVFALSDKPI-CSFQGHLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKI-FS-HSD 608 (927)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~v~~~s~k~i-~~l~gH~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~-~~-h~~ 608 (927)
+..++.. ..+......+..+++.+++.|+.+. .++.|..||.. ++.... +. ...
T Consensus 89 ---------------------d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 89 ---------------------SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp ---------------------CTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred ---------------------CCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 1121111 1112234568899999886555544 47899999988 655432 22 346
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK 686 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~ 686 (927)
.+..+++.+ +++++++...++.|..||. +++..... .....+..+++.++|..+++....+.|.+|+. ++.....
T Consensus 147 ~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 147 YPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp CEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 789999999 8887776666788999998 56555432 22356899999999987776666778999998 4443322
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
.. ......+.++++.+++. ++++...++.|.+||.......+........+.+++++++|+++++.. . .
T Consensus 224 -~~-------~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~ 292 (300)
T 2qc5_A 224 -DI-------PTPNARPHAITAGKNSE-IWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-K 292 (300)
T ss_dssp -EC-------SSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-E
T ss_pred -EC-------CCCCCCceEEEECCCCC-EEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-c
Confidence 11 13446689999999876 555555679999999754444443333345577899999998666654 4 6
Q ss_pred EEEEECC
Q 002407 767 VYVWKYE 773 (927)
Q Consensus 767 I~IWdl~ 773 (927)
|..++.+
T Consensus 293 i~~~~p~ 299 (300)
T 2qc5_A 293 IGKLNLN 299 (300)
T ss_dssp EEEEEEC
T ss_pred eEEeCCC
Confidence 7777653
No 190
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.34 E-value=8.2e-10 Score=121.89 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=157.0
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCc-ccceeecc----cccCcccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESE-RKGELLEK----QEDGHLNM 505 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~-~~~~l~~~----~~~~~~~~ 505 (927)
++|.+|+..++++.... -.++-..+..|+|+|+|+++++...++.|++|+..... .+..+... ........
T Consensus 69 ~~i~~~d~~~g~~~~~~----~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSS----GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CCEEEECTTTCCEEEEE----CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred CcEEEEECCCCeEEecc----CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 57899988777653322 13566789999999999999998889999999986442 23332111 01234456
Q ss_pred EEEEccCC-CCCeecccc-cCCceeeecccccccccccccCcccccceEeecCCCceEEEc----------cCCCCEEEE
Q 002407 506 LLLANGSP-EPTSLSPKH-LDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ----------GHLDDVLDL 573 (927)
Q Consensus 506 v~~v~~sp-d~~~la~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~----------gH~~~V~~l 573 (927)
...++++| ++.++++.. ....+. +++..++.+..+. ++......|
T Consensus 145 P~~ia~~~~~g~lyv~d~~~~~~I~-----------------------~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gi 201 (329)
T 3fvz_A 145 PTDVAVEPSTGAVFVSDGYCNSRIV-----------------------QFSPSGKFVTQWGEESSGSSPRPGQFSVPHSL 201 (329)
T ss_dssp EEEEEECTTTCCEEEEECSSCCEEE-----------------------EECTTSCEEEEECEECCSSSCCTTEESCEEEE
T ss_pred CcEEEEeCCCCeEEEEeCCCCCeEE-----------------------EEcCCCCEEEEeccCCCCCCCCCcccCCCcEE
Confidence 77889998 788777764 455442 2333444444443 233458899
Q ss_pred EecCC-cEE-EEEeCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEE-------CCCcEEEEeCCCCc
Q 002407 574 SWSKS-QHL-LSSSMDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGS-------LDAKVRIWSIPERQ 641 (927)
Q Consensus 574 ~~spd-~~L-~Sgs~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs-------~Dg~I~IWDl~t~~ 641 (927)
+++|+ +.| ++...++.|++|+..+++.+..+. +...+..++|+| +..+++.+ .+..|++|++.+++
T Consensus 202 a~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~ 279 (329)
T 3fvz_A 202 ALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGE 279 (329)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCC
T ss_pred EEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCe
Confidence 99998 665 455678899999999899988885 566788999998 43333332 24489999999999
Q ss_pred EEEec----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Q 002407 642 VVDWN----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE 680 (927)
Q Consensus 642 ~v~~~----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~ 680 (927)
++..+ .+...+..++++|+|..+++...++.|++|++..
T Consensus 280 ~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 280 IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 88875 3446799999999998888888899999999754
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=4.2e-10 Score=121.56 Aligned_cols=211 Identities=9% Similarity=-0.046 Sum_probs=154.6
Q ss_pred CCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcc
Q 002407 467 DGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHM 546 (927)
Q Consensus 467 dG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~ 546 (927)
.+++|++++.|+.|.+||.++++.+.++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~--------------------------------------------------- 32 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYP--------------------------------------------------- 32 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEE---------------------------------------------------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeC---------------------------------------------------
Confidence 46789999999999999988887554431
Q ss_pred cccceEeecCCCceEEEccCC-CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEccCCCCEE
Q 002407 547 VVPETVFALSDKPICSFQGHL-DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH--SDYVTCIQFNPVDDRYF 623 (927)
Q Consensus 547 ~~~~~v~~~s~k~i~~l~gH~-~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h--~~~V~~v~fsp~dg~~L 623 (927)
.+. ..+.++.++|++.++. +.++.|+.||. +++.+..+.. ...+.++.+.| ++++|
T Consensus 33 ------------------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~-dG~~l 91 (276)
T 3no2_A 33 ------------------LEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP-DGNAL 91 (276)
T ss_dssp ------------------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT-TSCEE
T ss_pred ------------------CCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC-CCCEE
Confidence 122 2456778888865555 56888999999 8998888873 35788999999 99999
Q ss_pred EEEEC-CCcEEEEeCCCCcEEEeccC-------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc
Q 002407 624 ISGSL-DAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 624 ~sgs~-Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
++.+. ++.|..+|. +++.+..+.. +.....+++.++|+++++...++.|..||.. ++.+..+..
T Consensus 92 v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~------ 163 (276)
T 3no2_A 92 VAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL------ 163 (276)
T ss_dssp EEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC------
T ss_pred EEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC------
Confidence 99887 777888885 5665543321 1234556789999999999999999999998 887766532
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC------CcceEEEEEecCCCEEEEEE
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN------TNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~------~~~v~sv~fspdg~~Lasgs 762 (927)
...+.++.+.+++. +++++..++.|..+|..+....++.... ...+..+...++|.++++..
T Consensus 164 ----~~~~~~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 164 ----SGTPFSSAFLDNGD-CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp ----SSCCCEEEECTTSC-EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred ----CCCccceeEcCCCC-EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 13455677888876 6777777889999996543333333211 12367888889999888874
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.29 E-value=6.8e-10 Score=122.74 Aligned_cols=191 Identities=10% Similarity=0.087 Sum_probs=139.9
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 570 V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
...+.+..+..+++...++.|.+||..+++.+..+........|++++ ++.++++...++.|.+||..++++.......
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 456666555566666778999999999999999888777899999998 7755555448899999999999887655444
Q ss_pred C------cEEEEEECCCCCEEEEEE--CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 650 E------MVTAACYTPDGQGALVGS--YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 650 ~------~V~sla~spdg~~l~tgs--~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
. .+..+++ ++..|+++. .++.|.+||+.+++....+.. ......++++|++. +++++..
T Consensus 125 ~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----------g~~p~~i~~~~dG~-l~v~~~~ 191 (328)
T 3dsm_A 125 DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----------GIQPTSLVMDKYNK-MWTITDG 191 (328)
T ss_dssp TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----------SSCBCCCEECTTSE-EEEEBCC
T ss_pred CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----------CCCccceEEcCCCC-EEEEECC
Confidence 4 5667777 455555555 488999999999987766432 22346788999885 4555444
Q ss_pred C----------CcEEEEECCcce--EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 722 D----------SRIRVVDGIDLV--HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 722 D----------g~I~VwD~~~~~--~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+ +.|.+||..+.. ..+... .......++|+|++++|+++.. .|++||+.++..
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 3 789999975433 233221 1235789999999999988755 899999987664
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.27 E-value=2e-10 Score=141.41 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=152.6
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCcee
Q 002407 454 AHNGSIWSIKFSLDGRYLASAGED-----CVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLE 528 (927)
Q Consensus 454 gH~~~I~~vafSpdG~~LaSgs~D-----gtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~ 528 (927)
+|...+..++|||||++||.+..+ ..|+|||+.+++...... ..+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--------~~~---------------------- 209 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--------KWV---------------------- 209 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--------EEE----------------------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--------CCc----------------------
Confidence 455578899999999999987654 469999998876432110 000
Q ss_pred eecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCC--------------cEEEEe
Q 002407 529 KKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDK--------------TVRLWH 594 (927)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~Dg--------------tV~lWD 594 (927)
.+..++|+||+.|+.++.++ .|++|+
T Consensus 210 ----------------------------------------~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~ 249 (741)
T 1yr2_A 210 ----------------------------------------KFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHR 249 (741)
T ss_dssp ----------------------------------------ESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEE
T ss_pred ----------------------------------------eeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEE
Confidence 01234555553344444433 489999
Q ss_pred CCCCcE--EEEEe---cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCC--c-EEEeccCCCcEEEEEECCCC
Q 002407 595 LSSKTC--LKIFS---HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPER--Q-VVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 595 l~t~~~--~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~--~-~v~~~~~~~~V~sla~spdg 661 (927)
+.+++. ..++. +...+..+.|+| ++++|+..+.++ .|++||+.++ + ...+......+.... +|+|
T Consensus 250 lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg 327 (741)
T 1yr2_A 250 LGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG 327 (741)
T ss_dssp TTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEET
T ss_pred CCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccC
Confidence 987762 33343 234688999999 999888877544 7999999877 5 555555554444443 4899
Q ss_pred CEEEEEECC----CeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE--CC-c
Q 002407 662 QGALVGSYK----GSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD--GI-D 732 (927)
Q Consensus 662 ~~l~tgs~D----g~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD--~~-~ 732 (927)
+.|+..+.+ +.|.+||+.++ ...... ..+...+..+.|. +..++++...|+..+||. .. .
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~---------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV---------PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSSCEEEEEE---------CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSC
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCccccEEEe---------cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCC
Confidence 998888764 45999999874 222221 1333456677777 344778888888877764 32 2
Q ss_pred ceEEEEeecCCcceEEEEEecCCCEEEEE-E---CCCcEEEEECCCCC
Q 002407 733 LVHKFKGFRNTNSQISASLTANGRYVVSA-S---EDSYVYVWKYEAES 776 (927)
Q Consensus 733 ~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s---~Dg~I~IWdl~s~~ 776 (927)
....+.. .....+..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 397 ~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2222221 134567788999998766532 2 35789999998764
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.26 E-value=1.2e-09 Score=118.04 Aligned_cols=197 Identities=13% Similarity=0.057 Sum_probs=142.8
Q ss_pred CceEEEccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
..+..+..+.....+++|+|+ + .++++..++.|..|+..++ ...+. +...+.+++|+| +++++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEE
Confidence 344555567778899999998 4 5778888999999999988 44554 677899999999 8988777766789999
Q ss_pred EeCCCCcEEEeccC-----CCcEEEEEECCCCCEEEE----EE-------------CCCeEEEEECCCCeeeeecccccc
Q 002407 635 WSIPERQVVDWNDL-----HEMVTAACYTPDGQGALV----GS-------------YKGSCHLYNTSENKLQQKSPINLQ 692 (927)
Q Consensus 635 WDl~t~~~v~~~~~-----~~~V~sla~spdg~~l~t----gs-------------~Dg~I~IwDl~~~~~~~~~~i~~~ 692 (927)
||..+++....... ...+..++++|+|+++++ |+ ..+.|..|+.. ++....
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~------ 167 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP------ 167 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE------
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe------
Confidence 99988876544322 134667999999998887 33 13466666655 433221
Q ss_pred cccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC---cc---eEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 693 NKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI---DL---VHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 693 ~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~---~~---~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
..+......++|+|++. .+++.+.++.|.+|+.. .+ ...+ ......+..++++++|+++++. ++.
T Consensus 168 ----~~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~ 238 (296)
T 3e5z_A 168 ----IRDRVKPNGLAFLPSGN-LLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDG 238 (296)
T ss_dssp ----ECCCSSEEEEEECTTSC-EEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTE
T ss_pred ----ecCCCCCccEEECCCCC-EEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCe
Confidence 13455678999999998 45777788999999953 22 2223 2234445679999999877766 788
Q ss_pred EEEEECC
Q 002407 767 VYVWKYE 773 (927)
Q Consensus 767 I~IWdl~ 773 (927)
|++|+..
T Consensus 239 v~~~~~~ 245 (296)
T 3e5z_A 239 VHVLTPD 245 (296)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999986
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.24 E-value=1.2e-09 Score=133.80 Aligned_cols=200 Identities=9% Similarity=0.018 Sum_probs=137.7
Q ss_pred CCCCEEEEEecCC-cEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCc--------
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMDK-----TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK-------- 631 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~Dg-----tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~-------- 631 (927)
|...+..++|+|| .+|+.+..++ +|++||+.+++.+........+..++|+| |++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEe-CCCEEEEEEECCccccccccc
Confidence 4456889999999 5666554433 89999999998876443333477899999 9999999888766
Q ss_pred --------EEEEeCCCCc----EEEecc-CCCcEEEEEECCCCCEEEEEEC-----CCeEEEEECCC------Cee-eee
Q 002407 632 --------VRIWSIPERQ----VVDWND-LHEMVTAACYTPDGQGALVGSY-----KGSCHLYNTSE------NKL-QQK 686 (927)
Q Consensus 632 --------I~IWDl~t~~----~v~~~~-~~~~V~sla~spdg~~l~tgs~-----Dg~I~IwDl~~------~~~-~~~ 686 (927)
|++|++.+++ ++.... +...+..+.|+|||++|+..+. +..|++||+.+ +.. ...
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999998875 222222 3446889999999999988775 56899999976 421 111
Q ss_pred cccccccccccCCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCcc----eEEEEeecCCcceEEEEEecCCCEEE
Q 002407 687 SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD---SRIRVVDGIDL----VHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 687 ~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D---g~I~VwD~~~~----~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
+ ..+...+.. .|+|++..+++.+..+ ..|.+||.... ...+..+.....+..++|++++.+++
T Consensus 282 l---------~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 282 L---------IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp E---------ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred e---------eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 1 133334444 4788887555554433 36999996543 24444433334577889998888888
Q ss_pred EEECCCc--EEEEECCCCC
Q 002407 760 SASEDSY--VYVWKYEAES 776 (927)
Q Consensus 760 sgs~Dg~--I~IWdl~s~~ 776 (927)
+...|+. |++|++.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp EEEETTEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEECCCCC
Confidence 9888885 5666765554
No 196
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.24 E-value=3.4e-08 Score=105.58 Aligned_cols=194 Identities=7% Similarity=0.003 Sum_probs=140.1
Q ss_pred CCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 566 HLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+...+..|++.+++.++.+. .++.|..|+.. ++. ..+. ....+..+++.+ ++.++++...++.|.+||. +++
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCC
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCC
Confidence 44678999999986655554 47889999986 433 3332 455789999999 8888887777889999998 665
Q ss_pred EEEec--cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 VVDWN--DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~v~~~--~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
..... .....+..+++.++|..+++...++.|.+||. +++.... .. ......+.++++.+++. ++++.
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~-------~~~~~~~~~i~~~~~g~-l~v~~ 200 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEF-KI-------PTPASGPVGITKGNDDA-LWFVE 200 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEE-EC-------SSTTCCEEEEEECTTSS-EEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eC-------CCCCCcceeEEECCCCC-EEEEc
Confidence 54432 23457899999999987777767789999999 6554432 11 13345688999999876 55555
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
..++.|.+||.......+........+..++++++|+++++...++.|.+|+..
T Consensus 201 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 201 IIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred cCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 568899999973333333333344668899999999977776678889999983
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.24 E-value=1e-08 Score=115.67 Aligned_cols=274 Identities=11% Similarity=0.018 Sum_probs=172.0
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecccccC
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
.|.+|+..+.++. .++.....+ .++|+|||++|+.+. .++.|.+||..+.+...++....
T Consensus 48 ~v~v~D~~t~~~~-----~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~--- 117 (373)
T 2mad_H 48 QQWVLDAGSGSIL-----GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD--- 117 (373)
T ss_pred EEEEEECCCCeEE-----EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC---
Confidence 7888887766543 344444444 899999999998885 36789999997665444331000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
.. .+. +......+.|+|+ ++
T Consensus 118 ---------------------------------------------------------~~-~~~-~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 118 ---------------------------------------------------------AP-RFD-VGPYSWMNANTPNNAD 138 (373)
T ss_pred ---------------------------------------------------------cc-ccc-cCCCccceEECCCCCE
Confidence 00 000 0112347889999 66
Q ss_pred EEEEeC--CCcEEEEeCCCCcEEEE-EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc------CCCc
Q 002407 581 LLSSSM--DKTVRLWHLSSKTCLKI-FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND------LHEM 651 (927)
Q Consensus 581 L~Sgs~--DgtV~lWDl~t~~~~~~-~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~------~~~~ 651 (927)
|+.+.. ++.|.++| .+++.+.. +..... +.+.|.....+++.+.||.+.++|. +++.+.... ....
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p 213 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQN 213 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcc
Confidence 777764 57899999 99998887 654332 4555634566778888999999999 877663221 1111
Q ss_pred -EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEEE-------
Q 002407 652 -VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVTS------- 720 (927)
Q Consensus 652 -V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsgs------- 720 (927)
.....+.+++..++..+..+.+.+.|+..........+.+.... ..........+.++|++..++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~ 293 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKL 293 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccc
Confidence 23345677666655555788999999976532211111110000 0011223445789998874444433
Q ss_pred --CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 721 --ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 721 --~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
..+.|.++|..+....-... .......+.|+|||+ +++++. .++.|.+||+.+.+....
T Consensus 294 ~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 294 HAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 23579999976544332222 233578899999999 777777 589999999998765543
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.23 E-value=1.5e-09 Score=117.29 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=146.4
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--Cc
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EM 651 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~~ 651 (927)
+|++.|++++.++.|++||..+++.+..+... ..+.++.+.| ++++|+ +.++.|..||. +++++..+... ..
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 46788999999999999999999999998833 4789999999 999888 45788999998 78877655543 47
Q ss_pred EEEEEECCCCCEEEEEEC-CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 652 VTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+.++.+.++|+++++.+. ++.|..+|. +++.+..+.+.... ..+......+.+.+++. +|++...++.|.+||.
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~---~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI---ERPHAQFRQINKNKKGN-YLVPLFATSEVREIAP 153 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC---SSGGGSCSCCEECTTSC-EEEEETTTTEEEEECT
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC---CcccccccCceECCCCC-EEEEecCCCEEEEECC
Confidence 889999999999999887 788888886 56666555432110 11112344557788886 7888889999999996
Q ss_pred CcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 731 IDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 731 ~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
. .....+... ......+.+.++|++++++..++.|+.||..+++..-
T Consensus 154 ~-G~~~w~~~~-~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 154 N-GQLLNSVKL-SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVR 200 (276)
T ss_dssp T-SCEEEEEEC-SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEE
T ss_pred C-CCEEEEEEC-CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEE
Confidence 5 333333322 2345567888999999999988899999998876543
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.18 E-value=3.7e-09 Score=111.90 Aligned_cols=234 Identities=6% Similarity=-0.027 Sum_probs=152.3
Q ss_pred CEEEEEecCCcEEEE-E-eCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKSQHLLS-S-SMDKTVRLWHLSSKTCLKIF-SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd~~L~S-g-s~DgtV~lWDl~t~~~~~~~-~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
...+|++++++.|+. + ..++.|.+|+..+....... .+...+.+|++.+ +++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999865555 5 67889999998765433221 2335788999999 888666655 88999999887665443
Q ss_pred cc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCc
Q 002407 646 ND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSR 724 (927)
Q Consensus 646 ~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~ 724 (927)
.. ....+..+++.++|+++++...++.|.+|+..+....... ......+.++++.+++. ++++...++.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~p~~i~~~~~g~-l~v~~~~~~~ 172 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP---------FTGLNDPDGVAVDNSGN-VYVTDTDNNR 172 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC---------CCSCCSCCCEEECTTCC-EEEEEGGGTE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec---------cccCCCceeEEEeCCCC-EEEEECCCCE
Confidence 32 2357899999999997777777889999976554332211 12334578899999886 6666667889
Q ss_pred EEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEec
Q 002407 725 IRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPW 804 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~ 804 (927)
|.+||................+..++++++|.++++...++.|++|+............ . ......+++..
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~--------~-~~~p~~i~~~~ 243 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--------G-LNTPLAVAVDS 243 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCC--------S-CSCEEEEEECT
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccC--------C-CCCceeEEECC
Confidence 99999655433332222335678999999998777777788999999866432111000 0 01122344545
Q ss_pred CCceeEEeecCCceeeccc
Q 002407 805 PGVGDTWGLQDTYLDEFST 823 (927)
Q Consensus 805 ~g~~~i~~~~d~~i~~~~~ 823 (927)
+|...+....+..+..+..
T Consensus 244 ~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 244 DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp TCCEEEEEGGGTEEEEECC
T ss_pred CCCEEEEECCCCEEEEEcC
Confidence 5655555555556655553
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.14 E-value=1.4e-08 Score=115.99 Aligned_cols=245 Identities=11% Similarity=0.056 Sum_probs=161.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
-...+.|+|+++|+++++...++.|++||..++......
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~----------------------------------------- 168 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH----------------------------------------- 168 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-----------------------------------------
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-----------------------------------------
Confidence 346889999999998888777889999998654321110
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCCC--cEEEEeCCCCcEEEEE----e-cC
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMDK--TVRLWHLSSKTCLKIF----S-HS 607 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~Dg--tV~lWDl~t~~~~~~~----~-h~ 607 (927)
.. ..... ++|+++ +.|+++..++ .|.+|+...+.....+ . ..
T Consensus 169 ----------------------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~ 218 (409)
T 3hrp_A 169 ----------------------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS 218 (409)
T ss_dssp ----------------------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred ----------------------------cc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence 00 11122 778888 5677777765 7999998776655444 2 44
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe----ccCCCcE--E-EEEECCC-CCEEEEEECCCeEEEEECC
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW----NDLHEMV--T-AACYTPD-GQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~----~~~~~~V--~-sla~spd-g~~l~tgs~Dg~I~IwDl~ 679 (927)
..+.+++++| ++..|+.+..++.|+.||..++..... ....... . .++|+|+ +.++++-...+.|+.|+..
T Consensus 219 ~~p~~iav~p-~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 219 GKIGAVALDE-TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp SCCCBCEECT-TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred CCcEEEEEeC-CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 6688999999 555566677788999999988765433 2112111 3 8999995 5555555667889999987
Q ss_pred CCeeeeeccc---cc-ccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEE-CCcceEEEEeec------------
Q 002407 680 ENKLQQKSPI---NL-QNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVD-GIDLVHKFKGFR------------ 741 (927)
Q Consensus 680 ~~~~~~~~~i---~~-~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD-~~~~~~~~~~~~------------ 741 (927)
.......-.. .. ..............+++.|++. ++++-. .++.|++|+ ....+..+.+..
T Consensus 298 g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~ 376 (409)
T 3hrp_A 298 GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLE 376 (409)
T ss_dssp CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTT
T ss_pred CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhc
Confidence 5421111000 00 0000001234588999999987 677777 789999999 333344444431
Q ss_pred -CCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 742 -NTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 742 -~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.......++++++|.++++-..++.|+.+.++
T Consensus 377 ~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 377 ATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred eEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 02357789999998888888888889888763
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.12 E-value=1.6e-09 Score=132.13 Aligned_cols=195 Identities=12% Similarity=0.055 Sum_probs=133.6
Q ss_pred cCCCCEEEEEecCC-cEEE-----EEeCCCcEEEEeCCCCcEE-EEEecCCceEEEEEccCCCCEEEEEECCCc------
Q 002407 565 GHLDDVLDLSWSKS-QHLL-----SSSMDKTVRLWHLSSKTCL-KIFSHSDYVTCIQFNPVDDRYFISGSLDAK------ 631 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~-----Sgs~DgtV~lWDl~t~~~~-~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~------ 631 (927)
+|...+..++|+|| .+|+ .|+.+.+|++||+.+++.+ ...........++|+| +++.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence 45667889999999 5555 2334568999999999865 2111111126899999 9999999998776
Q ss_pred -------EEEEeCCCCc----EEEec-cCCCcEEEEEECCCCCEEEEEECCC----eEEEEECCCCeeeeeccccccccc
Q 002407 632 -------VRIWSIPERQ----VVDWN-DLHEMVTAACYTPDGQGALVGSYKG----SCHLYNTSENKLQQKSPINLQNKK 695 (927)
Q Consensus 632 -------I~IWDl~t~~----~v~~~-~~~~~V~sla~spdg~~l~tgs~Dg----~I~IwDl~~~~~~~~~~i~~~~~~ 695 (927)
|++|++.+++ ++... .+...+..+.|+|||++|+..+.++ .|++|+..++.....
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l--------- 267 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLL--------- 267 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEE---------
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEe---------
Confidence 9999998875 33222 2335788999999999998887766 677776655443222
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEE---CCCcEEEEECCcce----EEEEeecCCcceEEEEEecCCCEEEEEECCCcEE
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTS---ADSRIRVVDGIDLV----HKFKGFRNTNSQISASLTANGRYVVSASEDSYVY 768 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs---~Dg~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~ 768 (927)
..+...+....+ +++. +++.+. .++.|.+||..... ..+..+.....+..++|+ ++.++++...|+..+
T Consensus 268 -~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 268 -VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp -EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred -ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 133344555666 6666 555554 35889999965432 334333334457778888 778889999999988
Q ss_pred EEECC
Q 002407 769 VWKYE 773 (927)
Q Consensus 769 IWdl~ 773 (927)
||.+.
T Consensus 344 l~~~~ 348 (695)
T 2bkl_A 344 VRVAT 348 (695)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.09 E-value=1.7e-09 Score=122.04 Aligned_cols=137 Identities=9% Similarity=0.030 Sum_probs=104.3
Q ss_pred CCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 566 HLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
+.. |+.|+| ....|+++ .++.|++||+.+........ |...+.++.+.+ . .++++..||.|.+||+.++....
T Consensus 87 lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 87 IPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp CTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc
Confidence 556 999999 33777777 88999999998776555443 778888888776 2 38889999999999999887654
Q ss_pred eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCee--eeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 645 WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKL--QQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 645 ~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~--~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
+...|++++|+|+| +++|..||.+++|+...... ...+...........|...|.+++|.+++.
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 34689999999999 78899999999999988775 333321111111114678899999999764
No 203
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.08 E-value=2.9e-08 Score=108.10 Aligned_cols=234 Identities=9% Similarity=0.042 Sum_probs=154.5
Q ss_pred EeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceee
Q 002407 451 EIQAHNGSIWSIKFSLDGR-YLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEK 529 (927)
Q Consensus 451 ~L~gH~~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~ 529 (927)
.|..+......+.|+|+|+ ++++...++.|..|+. +++ ..
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~------------------------------------- 79 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD------------------------------------- 79 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE-------------------------------------
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE-------------------------------------
Confidence 3445666778899999998 5667777889999976 222 11
Q ss_pred ecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeC-CCcEEEEeCCCCcEEEEEe---
Q 002407 530 KRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSM-DKTVRLWHLSSKTCLKIFS--- 605 (927)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~-DgtV~lWDl~t~~~~~~~~--- 605 (927)
.+..+...+..+++++++.|+++.. ++.|.+|+.. ++......
T Consensus 80 --------------------------------~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~ 126 (305)
T 3dr2_A 80 --------------------------------VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA 126 (305)
T ss_dssp --------------------------------EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred --------------------------------EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence 1112344578899999976766664 4789999986 55433332
Q ss_pred --cCCceEEEEEccCCCCEEEE----EEC-------------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEE
Q 002407 606 --HSDYVTCIQFNPVDDRYFIS----GSL-------------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALV 666 (927)
Q Consensus 606 --h~~~V~~v~fsp~dg~~L~s----gs~-------------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~t 666 (927)
....+..+++.| +++++++ |.. .+.|..||..+++..... .......++|+||++.|++
T Consensus 127 ~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv 204 (305)
T 3dr2_A 127 GKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYV 204 (305)
T ss_dssp TEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEE
T ss_pred CCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEE
Confidence 123467899999 8988876 332 246888887777665544 4456788999999998888
Q ss_pred EECC------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ceEEEEe
Q 002407 667 GSYK------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LVHKFKG 739 (927)
Q Consensus 667 gs~D------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~~~ 739 (927)
+... +.|.+|++....+.....+ . .........+++.++|. |.++..+ .|.+|+... ....+..
T Consensus 205 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~-----~~~~~~pdgi~~d~~G~--lwv~~~~-gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 205 SQTPEQGHGSVEITAFAWRDGALHDRRHF-A-----SVPDGLPDGFCVDRGGW--LWSSSGT-GVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp EECCC---CCCEEEEEEEETTEEEEEEEE-E-----CCSSSCCCSEEECTTSC--EEECCSS-EEEEECTTSCEEEEEEC
T ss_pred EecCCcCCCCCEEEEEEecCCCccCCeEE-E-----ECCCCCCCeEEECCCCC--EEEecCC-cEEEECCCCCEEEEEEC
Confidence 7665 6899999876552111110 0 11233456788999886 4444444 499999643 3333333
Q ss_pred ecCCcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 740 FRNTNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
. ..+..++|+++++.|..++.++ |+.++
T Consensus 276 ~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 276 P---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp S---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred C---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 2 2477899999999888887764 44444
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.08 E-value=4e-08 Score=110.86 Aligned_cols=235 Identities=8% Similarity=-0.028 Sum_probs=144.7
Q ss_pred eeeecCCCCeEEEccCceEEEEeccCccc--cc---ceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 414 SSATDDSQDVSFHGQERVRVRQYGKSCKD--LT---ALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 414 ~sa~~d~~~~~~~g~~~~~V~i~~~~s~~--l~---~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
..+......++++|..+ .+.+|+.+.-. +. .-+..+.+..+.+ |+.|+| |+++|+++ .++.|++||+.+.
T Consensus 42 lLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl 116 (388)
T 1xip_A 42 NLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL 116 (388)
T ss_dssp CEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST
T ss_pred EEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh
Confidence 33444445555655555 34447644322 00 0011112334777 999999 99999999 8899999998764
Q ss_pred cccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCC
Q 002407 489 ERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLD 568 (927)
Q Consensus 489 ~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~ 568 (927)
..... ...|..
T Consensus 117 ~~~~~---------------------------------------------------------------------~~~~~~ 127 (388)
T 1xip_A 117 SEFRT---------------------------------------------------------------------VTSFEK 127 (388)
T ss_dssp TCEEE---------------------------------------------------------------------EEECSS
T ss_pred hccCc---------------------------------------------------------------------cceeec
Confidence 31111 112344
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEec
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~ 646 (927)
.|.++.+.+.. +++++.||+|.+||+..+.... +...|+|++|+| ++ ++.|..||++++|+...+++ ...+
T Consensus 128 ~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 128 PVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEF 200 (388)
T ss_dssp CEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred ceeeEEecCCC-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCcccccccee
Confidence 56666665543 8889999999999999887654 456899999999 77 67899999999999888774 3333
Q ss_pred ----------cCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeeeee-c-cccccccc-ccCCCCC
Q 002407 647 ----------DLHEMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQK-S-PINLQNKK-KRSHQRK 702 (927)
Q Consensus 647 ----------~~~~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~~~-~-~i~~~~~~-~~~h~~~ 702 (927)
.+...|.+++|.+++.++++=... -.++|.....+..... + .+...... .+.+...
T Consensus 201 ~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~ 280 (388)
T 1xip_A 201 SLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMY 280 (388)
T ss_dssp CCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEE
T ss_pred cCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEccccCcCCcCCccCCceee
Confidence 256789999999999988873321 1456665333332111 1 11111110 1222222
Q ss_pred eEEE-EEcCCCCcEEEEEECC-CcEEEEE
Q 002407 703 ITGF-QFAPGSSSEVLVTSAD-SRIRVVD 729 (927)
Q Consensus 703 Vtsl-~fspdg~~~Llsgs~D-g~I~VwD 729 (927)
...+ .|.|+.+.++++++.- ..|-|++
T Consensus 281 ~~~l~~w~~~~~~l~iv~Ss~S~di~il~ 309 (388)
T 1xip_A 281 KVTLSGLIEPDANVNVLASSCSSEVSIWD 309 (388)
T ss_dssp EEEEEEEEETTEEEEEEEETTCSBCEEEC
T ss_pred eeehhcccccCCcEEEEeCCCCcceEEec
Confidence 2222 4777666677666543 4466665
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.08 E-value=6.3e-08 Score=104.64 Aligned_cols=199 Identities=8% Similarity=0.072 Sum_probs=136.4
Q ss_pred ccCCCCEEEEEecCCcEEEEE--------eCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCC-CCEEEEEECC
Q 002407 564 QGHLDDVLDLSWSKSQHLLSS--------SMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVD-DRYFISGSLD 629 (927)
Q Consensus 564 ~gH~~~V~~l~~spd~~L~Sg--------s~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~d-g~~L~sgs~D 629 (927)
...-....+++|++++.|+.+ ..++.|.+||..+++...... +...+.++++++ + ++++++ ...
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~-~~~ 91 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVA-DMR 91 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEE-ETT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEE-ECC
Confidence 344456789999988655544 678999999998887654433 446789999999 7 655544 445
Q ss_pred CcEEEEeCCCCcEEEe-ccC-----CCcEEEEEECCCCCEEEEEECC---------------CeEEEEECCCCeeeeecc
Q 002407 630 AKVRIWSIPERQVVDW-NDL-----HEMVTAACYTPDGQGALVGSYK---------------GSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 630 g~I~IWDl~t~~~v~~-~~~-----~~~V~sla~spdg~~l~tgs~D---------------g~I~IwDl~~~~~~~~~~ 688 (927)
..|.+||.. ++.... ... ...+..+++.++|+++++...+ +.|..|+.. ++.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~- 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD- 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-
Confidence 579999998 776554 322 1358899999999877776554 567777765 4432221
Q ss_pred cccccccccCCCCCeEEEEEc----CCCCcEEEEEECCCcEEEEECC---cce--EEEEeec-CC-cceEEEEEecCCCE
Q 002407 689 INLQNKKKRSHQRKITGFQFA----PGSSSEVLVTSADSRIRVVDGI---DLV--HKFKGFR-NT-NSQISASLTANGRY 757 (927)
Q Consensus 689 i~~~~~~~~~h~~~Vtsl~fs----pdg~~~Llsgs~Dg~I~VwD~~---~~~--~~~~~~~-~~-~~v~sv~fspdg~~ 757 (927)
.+......++|+ |++..++++...++.|.+||.. ... ..+.... .. .....++++++|++
T Consensus 169 ---------~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 169 ---------TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp ---------EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred ---------cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 222346789999 9876445555678999999843 111 1222211 11 45678999999999
Q ss_pred EEEEECCCcEEEEECCCCC
Q 002407 758 VVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~ 776 (927)
+++...++.|.+|+..++.
T Consensus 240 ~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp EEEEETTTEEEEECTTCBS
T ss_pred EEEEcCCCEEEEEcCCCCc
Confidence 8888888999999987554
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.08 E-value=1.1e-07 Score=104.86 Aligned_cols=186 Identities=8% Similarity=0.015 Sum_probs=121.5
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEccCCCCEEEEEEC------CCcEEEEe
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSL------DAKVRIWS 636 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h-----~~~V~~v~fsp~dg~~L~sgs~------Dg~I~IWD 636 (927)
..+.++.|++++.++.++.+ .|.+||..+++....... ...+.+++++| +++++++... .+.|..++
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe
Confidence 35788999999777666655 499999988876544332 23588999999 8887665542 24566666
Q ss_pred CCCCcEEEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECC--CC-eeeeecccccccccccCCCCCeEEEEEcCCC
Q 002407 637 IPERQVVDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS--EN-KLQQKSPINLQNKKKRSHQRKITGFQFAPGS 712 (927)
Q Consensus 637 l~t~~~v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~--~~-~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg 712 (927)
+++.............++|+|+++.++++. .++.|.+|++. ++ .......+. ........+.++++.+++
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~----~~~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI----DSTGIKGGMDGSVCDAEG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE----ECTTSSSEEEEEEECTTS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE----ECCCCCCCCCeeEECCCC
Confidence 565544433334678999999998776654 56889999986 55 321100000 001223456789999988
Q ss_pred CcEEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEe-cCCCEEEEEECC
Q 002407 713 SSEVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLT-ANGRYVVSASED 764 (927)
Q Consensus 713 ~~~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fs-pdg~~Lasgs~D 764 (927)
. ++++...++.|.+||... ....+.. ....+.+++|+ ++++.|+.++..
T Consensus 242 ~-lwva~~~~~~v~~~d~~g~~~~~i~~--~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 242 H-IWNARWGEGAVDRYDTDGNHIARYEV--PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp C-EEEEEETTTEEEEECTTCCEEEEEEC--SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred C-EEEEEeCCCEEEEECCCCCEEEEEEC--CCCCcEEEEEecCCCCEEEEEecC
Confidence 5 566666678999999632 2333332 34468899998 888777655543
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.07 E-value=4.8e-09 Score=128.11 Aligned_cols=242 Identities=13% Similarity=0.137 Sum_probs=150.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEE-----eCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 453 QAHNGSIWSIKFSLDGRYLASA-----GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSg-----s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+|...|..++|||||++||-+ +...+|+|||+.+++.+....
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-------------------------------- 172 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-------------------------------- 172 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--------------------------------
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--------------------------------
Confidence 3567789999999999999843 334679999998876322110
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cEEEEEeCC-------------CcEEEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QHLLSSSMD-------------KTVRLW 593 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs~D-------------gtV~lW 593 (927)
.+. ....++|+ | ..|+.++.+ ..|++|
T Consensus 173 ------------------------------------~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 173 ------------------------------------KDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp ------------------------------------EEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred ------------------------------------CCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 000 01234566 5 445555555 349999
Q ss_pred eCCCCcE--EEEEec----CCceEEEEEccCCCCEEEEEEC----CCcEEEEeCCCC--cEEEeccCCCcEEEEEECCCC
Q 002407 594 HLSSKTC--LKIFSH----SDYVTCIQFNPVDDRYFISGSL----DAKVRIWSIPER--QVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 594 Dl~t~~~--~~~~~h----~~~V~~v~fsp~dg~~L~sgs~----Dg~I~IWDl~t~--~~v~~~~~~~~V~sla~spdg 661 (927)
++.+... ..++.. ...+..+.|+| ++++|+.... ...|+++|+.++ +...+.......... ++++|
T Consensus 214 ~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g 291 (693)
T 3iuj_A 214 RLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKG 291 (693)
T ss_dssp ETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEET
T ss_pred ECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccC
Confidence 9987653 344432 33578899999 8888765433 247999999776 455555555544444 66777
Q ss_pred CEEEEEECC----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCcceE
Q 002407 662 QGALVGSYK----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--RIRVVDGIDLVH 735 (927)
Q Consensus 662 ~~l~tgs~D----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~~~~ 735 (927)
..|+..+.. +.|.++|+.++.......+ ..+...+. .|++++..++++...++ .|++||......
T Consensus 292 ~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-------~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~ 362 (693)
T 3iuj_A 292 STLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-------IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV 362 (693)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-------ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCccccEEE-------ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee
Confidence 766655542 5799999987653110011 13334444 78888875555555555 688888653322
Q ss_pred EEEeecCCcceEEEEEecCCCEEEEEECC----CcEEEEECCCCC
Q 002407 736 KFKGFRNTNSQISASLTANGRYVVSASED----SYVYVWKYEAES 776 (927)
Q Consensus 736 ~~~~~~~~~~v~sv~fspdg~~Lasgs~D----g~I~IWdl~s~~ 776 (927)
..........+..+.++++++.|+....+ +.|+.||+.+++
T Consensus 363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 22222234456677788888876655444 789999997754
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.06 E-value=1.2e-07 Score=102.89 Aligned_cols=187 Identities=10% Similarity=0.128 Sum_probs=123.4
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEccCCCCEEEEEECC---------CcEE
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH-----SDYVTCIQFNPVDDRYFISGSLD---------AKVR 633 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h-----~~~V~~v~fsp~dg~~L~sgs~D---------g~I~ 633 (927)
..+.++++++++.|+.+. +..|.+||..+++....... ...+..+++.| +++++++.... ....
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~ 131 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGA 131 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEE
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcE
Confidence 457889999996666665 56899999998876544432 23578999999 88876654321 2234
Q ss_pred EEeCC-CCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEEC--CCCeeeeecccccccccccCCCCCeEEEEEc
Q 002407 634 IWSIP-ERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNT--SENKLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 634 IWDl~-t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl--~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
||.+. .++...........+.++|+|+++.|+++ +.++.|.+|++ .++.+.....+. ........+..+++.
T Consensus 132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~----~~~~~~~~p~g~~~d 207 (297)
T 3g4e_A 132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVY----KLEKEEQIPDGMCID 207 (297)
T ss_dssp EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEE----ECCGGGCEEEEEEEB
T ss_pred EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEE----ECCCCCCCCCeeEEC
Confidence 55443 24444444444567899999999977554 55788999987 455432211100 001223567899999
Q ss_pred CCCCcEEEEEECCCcEEEEECC--cceEEEEeecCCcceEEEEEe-cCCCEEEEEEC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGI--DLVHKFKGFRNTNSQISASLT-ANGRYVVSASE 763 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~--~~~~~~~~~~~~~~v~sv~fs-pdg~~Lasgs~ 763 (927)
++|. ++++....+.|.+||.. +.+..+.. ....+++++|. |+++.|+.++.
T Consensus 208 ~~G~-lwva~~~~~~v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 208 AEGK-LWVACYNGGRVIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTSC-EEEEEETTTEEEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCC-EEEEEcCCCEEEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence 9985 66677778889999964 44444443 34568999998 88887765553
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.04 E-value=1.3e-07 Score=106.67 Aligned_cols=170 Identities=11% Similarity=0.024 Sum_probs=120.1
Q ss_pred cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEeccCC--------C
Q 002407 589 TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQVVDWNDLH--------E 650 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~~~~--------~ 650 (927)
+|.+||..+++.+..+.....- .++|+| ++++|+++. .++.|.+||..+.+.+...... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~ 125 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP 125 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence 8999999999988877743333 999999 999988876 3678999999988877654332 2
Q ss_pred cEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeee-cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 651 MVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 651 ~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
....+.|+|||++|+++.. ++.|.++| .+++.... +.+ . .++.+.|.+...+++.+.|+.+.+
T Consensus 126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~----------~---~~~~~~~~~~~~~~~~~~dg~~~~ 191 (373)
T 2mad_H 126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS----------P---TCYHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC----------C---ceEEEEeCCCceEEEEcCCCCEEE
Confidence 4568999999999999874 47899999 99887655 432 1 124566777667788889999999
Q ss_pred EECCcceEEEEee-----cCCcce-EEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 728 VDGIDLVHKFKGF-----RNTNSQ-ISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~~~~~~~~~~-----~~~~~v-~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+|. ......... ....++ ....+.+++..++..+..+.|++.|+.+.
T Consensus 192 vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 192 TDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 997 432221110 111111 23456666655555557889999998754
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.03 E-value=7.2e-07 Score=95.16 Aligned_cols=194 Identities=7% Similarity=-0.007 Sum_probs=138.9
Q ss_pred CCCCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEe---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 566 HLDDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFS---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 566 H~~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
+...+..|++.+++.|+.+. .++.|..||.. ++.. .+. ....+..+++.+ +++++++...++.|..||.. ++
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SC
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CC
Confidence 34678899999886555555 47889999988 5543 333 346789999998 88888777668899999987 66
Q ss_pred EEEec-c-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 VVDWN-D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~v~~~-~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
..... . ....+..+++.++|+.+++...++.|..||. +++... +.. ......+.++++.+++. ++++.
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~-------~~~~~~~~~i~~d~~g~-l~v~~ 205 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPL-------PTNAAAPVGITSGNDGA-LWFVE 205 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EEC-------SSTTCCEEEEEECTTSS-EEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeC-------CCCCCCcceEEECCCCC-EEEEc
Confidence 55432 2 3457899999999996666666788999998 554432 111 13345688999999875 55555
Q ss_pred ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 720 SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 720 s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
...+.|.+||.......+........+..++++++|++.++...++.|.+|+..
T Consensus 206 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 206 IMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred cCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 567789999974333333333334567899999999977776667889999873
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.03 E-value=2.1e-08 Score=114.63 Aligned_cols=275 Identities=11% Similarity=0.077 Sum_probs=175.7
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeeccccc
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQED 500 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~ 500 (927)
+.|.++|..+.++.... ..-..+ .|+|+|||++|+.+. .++.|.++|..+.+...++......
T Consensus 99 ~~VsVID~~t~~vv~~I-----~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMT-----DGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEE-----EECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEE-----ECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 78999998877665433 323344 799999999888775 4678999999887765554210000
Q ss_pred CccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-c
Q 002407 501 GHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-Q 579 (927)
Q Consensus 501 ~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~ 579 (927)
. + ........+.++|+ +
T Consensus 172 ---------------r----------------------------------------------~-~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 172 ---------------R----------------------------------------------F-LVGTYQWMNALTPDNK 189 (426)
T ss_dssp ---------------C----------------------------------------------C-CBSCCGGGSEECTTSS
T ss_pred ---------------c----------------------------------------------c-ccCCCcceEEEcCCCC
Confidence 0 0 00011234678898 5
Q ss_pred EEEEEeC--CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe----ccCCC-c-
Q 002407 580 HLLSSSM--DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW----NDLHE-M- 651 (927)
Q Consensus 580 ~L~Sgs~--DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~----~~~~~-~- 651 (927)
+|+.+.. +++|.+.|+.+++.+..+.-... ....|.....+++.+.||.+.+.++.++++... +.... .
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~ 266 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELL 266 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCB
T ss_pred EEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCce
Confidence 6777764 57899999999999988874332 334452446777888899988888866665521 11111 1
Q ss_pred EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeeccccccccccc---CCCCCeEEEEEcCCCCcEEEEEEC-------
Q 002407 652 VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR---SHQRKITGFQFAPGSSSEVLVTSA------- 721 (927)
Q Consensus 652 V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~---~h~~~Vtsl~fspdg~~~Llsgs~------- 721 (927)
...+.|.+++..++.....+.+.+.|+..........+.+...... ........++++|++..++++...
T Consensus 267 ~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk 346 (426)
T 3c75_H 267 INHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHK 346 (426)
T ss_dssp CSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTT
T ss_pred eeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccccc
Confidence 1235689999988888889999999997655332211111000000 011112236899998855554431
Q ss_pred --CCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 722 --DSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 722 --Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
.+.|.++|..+. +..+... .....+.|+|||+ +++++. .++.|.|+|+.+.+...+
T Consensus 347 ~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 347 AASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 357999996544 3333322 2467899999999 888888 589999999998765433
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.02 E-value=5.4e-08 Score=109.49 Aligned_cols=275 Identities=12% Similarity=0.102 Sum_probs=170.3
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecccc
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQE 499 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~ 499 (927)
.++|.+++..+.++.. ++..-..+ . |+++|||++|+.+. .++.|.+||..+.+...++....
T Consensus 58 ~~~V~ViD~~t~~v~~-----~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~- 129 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIG-----MIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPD- 129 (386)
T ss_dssp SEEEEEEETTTTEEEE-----EEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-
T ss_pred CCEEEEEECCCCeEEE-----EEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCC-
Confidence 5789999887766543 33333444 4 99999999887765 36789999998877655542100
Q ss_pred cCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-
Q 002407 500 DGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS- 578 (927)
Q Consensus 500 ~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd- 578 (927)
+... .....-..+.++|+
T Consensus 130 ---------------g~r~----------------------------------------------~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 130 ---------------APRF----------------------------------------------LVGTYPWMTSLTPDG 148 (386)
T ss_dssp ---------------CCCC----------------------------------------------CBSCCGGGEEECTTS
T ss_pred ---------------cccc----------------------------------------------ccCCCCceEEEcCCC
Confidence 0000 00112235788998
Q ss_pred cEEEEEeC--CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEecc-C---C-C
Q 002407 579 QHLLSSSM--DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWND-L---H-E 650 (927)
Q Consensus 579 ~~L~Sgs~--DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~-~---~-~ 650 (927)
.+|+.+.. ++.|.++|+.+++.+.++.-... ..+.|...+.+++.+.||++.+.++.+ +++..... . . .
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 56776654 68999999999999998864432 223353667788889999999999976 55533111 1 1 1
Q ss_pred cE-EEEEE-CCCCCEEEEEECCCeEEEEECCCCeeeeeccccc-c--cccccCCCCCeEEEEEcCCCCcEEEEEEC----
Q 002407 651 MV-TAACY-TPDGQGALVGSYKGSCHLYNTSENKLQQKSPINL-Q--NKKKRSHQRKITGFQFAPGSSSEVLVTSA---- 721 (927)
Q Consensus 651 ~V-~sla~-spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~-~--~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---- 721 (927)
.+ ....| .++|++++ .+.+|.|++.|+.+........+.+ . ..........+..+++++++..++++...
T Consensus 226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 22 12355 36776555 5568999999997764322211110 0 00000112233356778888754444331
Q ss_pred -----CCcEEEEECCcc--eEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 722 -----DSRIRVVDGIDL--VHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 722 -----Dg~I~VwD~~~~--~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
...|.++|..+. +..+.. ...+..+.|++|++ +|+++. .++.|.++|..+++....
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 257999996543 333332 23567899999997 666654 589999999998765433
No 213
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.02 E-value=3.6e-08 Score=121.21 Aligned_cols=193 Identities=15% Similarity=0.087 Sum_probs=125.9
Q ss_pred CCCCEEEEEecCC-cEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCc--------
Q 002407 566 HLDDVLDLSWSKS-QHLLSSSMD-----KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAK-------- 631 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sgs~D-----gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~-------- 631 (927)
|...+..++|+|| .+|+.++.+ .+|++||+.+++.+....+...+..++|+| + +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST-T-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEEC-C-CEEEEEEecCccccccccc
Confidence 3345778999999 566655443 469999999998866433333346889999 8 88888877654
Q ss_pred ------EEEEeCCCCc----EEEecc-CCCcEEEEEECCCCCEEEEEECCC-----eEEEEECCCCee--eeeccccccc
Q 002407 632 ------VRIWSIPERQ----VVDWND-LHEMVTAACYTPDGQGALVGSYKG-----SCHLYNTSENKL--QQKSPINLQN 693 (927)
Q Consensus 632 ------I~IWDl~t~~----~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg-----~I~IwDl~~~~~--~~~~~i~~~~ 693 (927)
|++|++.+++ ++.... +...+..+.|+|||++|+..+.++ .|++||+.++.. ...+
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l------ 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL------ 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe------
Confidence 8999997765 222211 223588999999999998887654 799999987621 1111
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEEEC----CCcEEEEECCcc---eEEEEeecCCcceEEEEEecCCCEEEEEECCCc
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVTSA----DSRIRVVDGIDL---VHKFKGFRNTNSQISASLTANGRYVVSASEDSY 766 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsgs~----Dg~I~VwD~~~~---~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~ 766 (927)
..+...+.... .|++. .|+..+. .+.|.+||.... ...+... ....+..++|+ ++.++++...|+.
T Consensus 313 ---~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 313 ---IPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp ---ECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred ---cCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCE
Confidence 12233344443 47777 4555544 345999996542 2222222 23345567777 6678888889998
Q ss_pred EEEEECC
Q 002407 767 VYVWKYE 773 (927)
Q Consensus 767 I~IWdl~ 773 (927)
.+||.+.
T Consensus 386 ~~l~~~~ 392 (741)
T 1yr2_A 386 SQVLAFD 392 (741)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 7777664
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.99 E-value=4e-08 Score=109.03 Aligned_cols=204 Identities=10% Similarity=0.047 Sum_probs=133.5
Q ss_pred cCCCCEEEEEecCCcEEEEEeC------CCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEE---C
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSM------DKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGS---L 628 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~------DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs---~ 628 (927)
+|...+..+++.+++.|+.... +..|.+||+.+++.+..+.. ...+..++++|.++..+++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 3566789999999977766653 57899999999988777652 235689999983344445554 5
Q ss_pred CCcEEEEeCCCCcEEEeccC------------------------------CCcEEEEEECCCCCEEEEEECCC-eEEEEE
Q 002407 629 DAKVRIWSIPERQVVDWNDL------------------------------HEMVTAACYTPDGQGALVGSYKG-SCHLYN 677 (927)
Q Consensus 629 Dg~I~IWDl~t~~~v~~~~~------------------------------~~~V~sla~spdg~~l~tgs~Dg-~I~IwD 677 (927)
++.|.+||+.+++....... ...+..++|+|+|+.|+++...+ .+..++
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 78899999988877664422 12368899999999988887766 455554
Q ss_pred CC---CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC-CcceEEEEeecCCcceEEEEEec
Q 002407 678 TS---ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG-IDLVHKFKGFRNTNSQISASLTA 753 (927)
Q Consensus 678 l~---~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~-~~~~~~~~~~~~~~~v~sv~fsp 753 (927)
.. .+... ...+... ....++......+++.+++. ++++...++.|.+||. ......+...........++|.+
T Consensus 224 ~~~~~~~~~~-~~~~~~~-~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~ 300 (343)
T 2qe8_A 224 SADLSNLQLT-DAELGSK-IERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS 300 (343)
T ss_dssp HHHHTCTTCC-HHHHHTT-CEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT
T ss_pred HHHhcCCCCC-hhhhhcc-eEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC
Confidence 32 11100 0000000 00012233566789999875 7777788899999997 33223332222244578999999
Q ss_pred CCCEEEEEECCCcEEEEE
Q 002407 754 NGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 754 dg~~Lasgs~Dg~I~IWd 771 (927)
+++++++.+..+.+.+|.
T Consensus 301 ~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 301 DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TSCEEEEECCGGGSGGGB
T ss_pred CCcEEEEeCccccccccc
Confidence 998888887655554444
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.98 E-value=1.7e-07 Score=101.70 Aligned_cols=199 Identities=11% Similarity=0.091 Sum_probs=135.8
Q ss_pred cCCCCEEEEEecCC-cE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 565 GHLDDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
.+..-.....|+++ +. +++....+.|+.||..+++. ..+.....+.+++++| +++++++ . +..|.+||..+++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE
Confidence 34445678899985 54 55666789999999998765 4556678899999999 8885554 4 56899999988876
Q ss_pred EEeccC-----CCcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeeeeecccccccccccCCCCCeEEE
Q 002407 643 VDWNDL-----HEMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGF 706 (927)
Q Consensus 643 v~~~~~-----~~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl 706 (927)
..+... ...+..++++|+|+++++.... +.|+.++.. ++.... .......+.+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~----------~~~~~~pngi 154 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKY----------FDQVDISNGL 154 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEE----------EEEESBEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEE----------eeccccccce
Confidence 544322 2358899999999966654321 234444443 222211 1223446789
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECC--c--c--eEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGI--D--L--VHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~--~--~--~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+|+|++..++++.+.++.|.+|+.. . + ...+... ........++++++|++.++....+.|.+|+..+++..
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 9999998666677778999999842 1 1 1222211 12345678999999998888888888999999876543
No 216
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.94 E-value=1.5e-05 Score=98.63 Aligned_cols=313 Identities=10% Similarity=0.053 Sum_probs=195.7
Q ss_pred CCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc--c
Q 002407 421 QDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK--Q 498 (927)
Q Consensus 421 ~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~--~ 498 (927)
...+|.|....-|..|+...+++..... ..+...|.+|...++|.+.+ |..++-|.+|+..+++...-.... .
T Consensus 183 ~g~lwigt~~~Gl~~~~~~~~~~~~~~~----~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~ 257 (795)
T 4a2l_A 183 GDQIYIGTSTDGLYTYSITQKTFEKVIP----ILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNP 257 (795)
T ss_dssp TTEEEEEESSSCEEEEETTTCCEEECC--------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCT
T ss_pred CCCEEEEECCCCEEEEeCCCCeEEEecC----CCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCc
Confidence 3456777765457788876665533211 12456799999988887555 444445888998765432211100 0
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc--------cCCCCE
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLDDV 570 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--------gH~~~V 570 (927)
..-....|.++...+++.+.+.... +.... +........+. -....|
T Consensus 258 ~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~~i 312 (795)
T 4a2l_A 258 KSISSNYIRSLAMDSQNRLWIGTFN-DLNIY------------------------HEGTDSFASYSSNPVENGSLSQRSV 312 (795)
T ss_dssp TSCSCSBEEEEEECTTSCEEEEESS-CEEEE------------------------ETTTTEEEEECCCTTSTTSCSSSCE
T ss_pred cccCCCeEEEEEEcCCCCEEEEeCC-hhheE------------------------cCCCCeEEEEecCCCCCCCCCCCcE
Confidence 1112355777777777776665432 32211 11111111111 123579
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
.+|...+++.|..|+.++-|..|+..+........ ....|.++...+ +++ |..|+.++-|..|+..+++..
T Consensus 313 ~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~-lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 313 RSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKN-LWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSC-EEEEESSSCEEEECTTTCCEE
T ss_pred EEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCC-EEEEECCCCeEEEcCCCCcEE
Confidence 99999888999999999999999977655433221 235689999887 665 556778878999998887765
Q ss_pred Eecc---------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 644 DWND---------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 644 ~~~~---------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
.... ....|.+++..++|..|.+|+.++-|.+||..+++....... ........|.++...+++.
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~- 464 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-----NSQLVNENVYAILPDGEGN- 464 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-----TSCCSCSCEEEEEECSSSC-
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-----CCCcCCCeeEEEEECCCCC-
Confidence 5431 135789999988888678888878899999988765433210 0012346799999888774
Q ss_pred EEEEEECCCcEEEEECCcceEE-EEee-----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 715 EVLVTSADSRIRVVDGIDLVHK-FKGF-----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~~~~~-~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|.+++. +.|.+||....... +... .....|.++...++|++.+... +.|+.|+..+.
T Consensus 465 -lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 465 -LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp -EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred -EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 566666 56888986543222 2111 1235688888889888766554 45889987654
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.91 E-value=3.4e-07 Score=104.45 Aligned_cols=202 Identities=8% Similarity=-0.000 Sum_probs=141.5
Q ss_pred CCEEEEEecCCcEEEEE-eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sg-s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~ 644 (927)
.....|+|++++.|+.+ ..++.|++||..++............. ++|+| ++++|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999998665555 456899999999888776665444444 99999 888888888766 78888887655432
Q ss_pred ec----c-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCC--eEEEEEcCCCCcEEE
Q 002407 645 WN----D-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRK--ITGFQFAPGSSSEVL 717 (927)
Q Consensus 645 ~~----~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~--Vtsl~fspdg~~~Ll 717 (927)
.. . ....+..++++|++..|+++..++.|+.||..++.......... ...... ...++|+|++..+++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~-----~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL-----SGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC-----CSCCCCSSCCEEEEETTTTEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc-----cCCCCCCccccEEEeCCCCEEEE
Confidence 22 2 34567889999965566667778899999998775432211000 111111 138999997665677
Q ss_pred EEECCCcEEEEECCcceEEEEeec-------------CCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 718 VTSADSRIRVVDGIDLVHKFKGFR-------------NTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~~~~~~~~~~-------------~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
+-...+.|+.|+.......+.+.. .......++++++|+++++-. .++.|+.|++.++.
T Consensus 284 ~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 777889999999654444444432 023467899999999888777 78899999976543
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.85 E-value=1.5e-06 Score=95.55 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=130.5
Q ss_pred CCEEEEEecCC-cE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 568 DDVLDLSWSKS-QH-LLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 568 ~~V~~l~~spd-~~-L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.-...+.|+++ +. +++...++.|..||..+++.. .+.....+.+++|.| +++++++. . ..|.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~-dg~l~v~~-~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKIS-DSKQLIAS-D-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEE-TTEEEEEE-T-TEEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeC-CCeEEEEE-C-CCEEEEECCCCcEEEE
Confidence 34567899996 54 556667889999999887643 445667899999999 88776654 4 4599999988876554
Q ss_pred ccC-----CCcEEEEEECCCCCEEEEEEC------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 646 NDL-----HEMVTAACYTPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 646 ~~~-----~~~V~sla~spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
... ...+..++++|+|+++++... .+.|..++ +++..... ........++|+|++..
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~----------~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF----------ADISIPNSICFSPDGTT 192 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE----------EEESSEEEEEECTTSCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee----------CCCcccCCeEEcCCCCE
Confidence 332 136889999999997665432 24566666 45433211 12234678999999875
Q ss_pred EEEEEECCCcEEEEECC--cc-----eEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 715 EVLVTSADSRIRVVDGI--DL-----VHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~--~~-----~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
++++...++.|.+||.. .. ...+... ........++++++|.+.++...++.|.+|+..
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 55665667899999953 21 1223222 123446689999999988877777889999873
No 219
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.85 E-value=9.2e-08 Score=104.14 Aligned_cols=296 Identities=12% Similarity=0.060 Sum_probs=170.3
Q ss_pred CCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeeccc
Q 002407 419 DSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQ 498 (927)
Q Consensus 419 d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~ 498 (927)
|....+|.+..++.|..|+ .++++... +..+...+.++.+.++|.+++ ++.+ |..+|. +++....+....
T Consensus 28 d~~g~l~v~t~~~~l~~~d-~~g~~~~~-----~~~~~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 28 AKNGTIYLGSSNKNLYAIN-TDGSVKWF-----FKSGEIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CTTSCEECSSTTTTTEEEC-TTSCEEES-----SCGGGEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC--
T ss_pred ccCCeEEEEcCCCEEEEEC-CCCcEEEE-----EecCCCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCC
Confidence 3344567777777777787 55443221 123445667888888876444 4444 888885 555443332110
Q ss_pred ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC
Q 002407 499 EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS 578 (927)
Q Consensus 499 ~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd 578 (927)
. ... ...+. ++.+.+.. .++.+. .++..++.+..+..+...+.++...++
T Consensus 98 ~--~~~-~~~~~---~~~l~v~t-~~~~l~-----------------------~~d~~g~~~~~~~~~~~~~~~~~~~~~ 147 (330)
T 3hxj_A 98 A--IVS-DFTIF---EDILYVTS-MDGHLY-----------------------AINTDGTEKWRFKTKKAIYATPIVSED 147 (330)
T ss_dssp -----C-CEEEE---TTEEEEEC-TTSEEE-----------------------EECTTSCEEEEEECSSCCCSCCEECTT
T ss_pred C--ccc-CceEE---CCEEEEEe-cCCEEE-----------------------EEcCCCCEEEEEcCCCceeeeeEEcCC
Confidence 0 000 01111 33333222 222221 112222333333334444556666777
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec-cCCCcEEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN-DLHEMVTAAC 656 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~-~~~~~V~sla 656 (927)
+.|+.++.++.|..+|.. ++.+..+. ....+.++.+.+ ++.+++ ++ +.|..|| .+++.+... .....+.++.
T Consensus 148 g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~ 221 (330)
T 3hxj_A 148 GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA 221 (330)
T ss_dssp SCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCE
T ss_pred CEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceE
Confidence 888899999999999999 87776666 445667777766 666444 44 8899999 666655433 3335677888
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEE
Q 002407 657 YTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHK 736 (927)
Q Consensus 657 ~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~ 736 (927)
+.++|. |.+++.++.|..+|.. +....... .....+..+.+.+++ .|.+++.++.|..+|.. ....
T Consensus 222 ~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~---------~~~~~~~~~~~~~~g--~l~v~t~~ggl~~~d~~-g~~~ 287 (330)
T 3hxj_A 222 ISEDGT-IYVTSLDGHLYAINPD-GTEKWRFK---------TGKRIESSPVIGNTD--TIYFGSYDGHLYAINPD-GTEK 287 (330)
T ss_dssp ECTTSC-EEEEETTTEEEEECTT-SCEEEEEE---------CSSCCCSCCEECTTS--CEEEECTTCEEEEECTT-SCEE
T ss_pred ECCCCe-EEEEcCCCeEEEECCC-CCEeEEee---------CCCCccccceEcCCC--eEEEecCCCCEEEECCC-CcEE
Confidence 888875 6667778888888854 44433322 111222334555555 57888889899999953 2222
Q ss_pred EEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 737 FKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 737 ~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.........+.++...++|+ |..++.+|.+++...+..
T Consensus 288 ~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 288 WNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 22222344455667777776 555888999999887654
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.83 E-value=1.1e-06 Score=99.92 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=129.1
Q ss_pred EEEecCCcEEEEEeCC------CcEEEEeCCCCcEEEEEecC----CceEEEEEccCCCCEEEEEE--------------
Q 002407 572 DLSWSKSQHLLSSSMD------KTVRLWHLSSKTCLKIFSHS----DYVTCIQFNPVDDRYFISGS-------------- 627 (927)
Q Consensus 572 ~l~~spd~~L~Sgs~D------gtV~lWDl~t~~~~~~~~h~----~~V~~v~fsp~dg~~L~sgs-------------- 627 (927)
.+...|++.++++..+ +.|.++|..+.+.+..+... ..-..+.|+| +++.+++..
T Consensus 142 ~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~ 220 (462)
T 2ece_A 142 TVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLE 220 (462)
T ss_dssp EEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTT
T ss_pred ceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchh
Confidence 4556677765555544 78999999999999988622 2345688899 888888875
Q ss_pred -----CCCcEEEEeCCCCcEEEeccCC---CcEEEEEE--CCCCCEEEEEEC------CCeEEEEECCCCeeeeeccccc
Q 002407 628 -----LDAKVRIWSIPERQVVDWNDLH---EMVTAACY--TPDGQGALVGSY------KGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 628 -----~Dg~I~IWDl~t~~~v~~~~~~---~~V~sla~--spdg~~l~tgs~------Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
...+|.+||+.+++++..+... .....+.| +|+++++.+++. +++|.+|....+.......+.+
T Consensus 221 ~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi 300 (462)
T 2ece_A 221 HLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEI 300 (462)
T ss_dssp THHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeC
Confidence 3688999999999888766654 34556656 999999888874 5688887766655433332222
Q ss_pred ccccccC-----------CCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-----cceEEEEeecC------------C
Q 002407 692 QNKKKRS-----------HQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-----DLVHKFKGFRN------------T 743 (927)
Q Consensus 692 ~~~~~~~-----------h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-----~~~~~~~~~~~------------~ 743 (927)
....... .......|.++++++.++++.-..+.|.+||.. +++..+..... .
T Consensus 301 ~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ 380 (462)
T 2ece_A 301 PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLT 380 (462)
T ss_dssp CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCC
T ss_pred CCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCC
Confidence 2111000 134578899999999666666678999999953 22222222100 0
Q ss_pred cceEEEEEecCCCEEEEEE
Q 002407 744 NSQISASLTANGRYVVSAS 762 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs 762 (927)
..-..+.++|||++|+++.
T Consensus 381 ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCCCCEEECTTSSEEEEEC
T ss_pred CCCCEEEEcCCCCEEEEEc
Confidence 1246789999999999987
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.83 E-value=9.9e-07 Score=99.23 Aligned_cols=198 Identities=7% Similarity=0.053 Sum_probs=127.3
Q ss_pred EEecCC-cEEEEEe----------CCCcEEEEeCCCCcEEEEEecC--------CceEEEEEccCCCCEEEEEEC--CCc
Q 002407 573 LSWSKS-QHLLSSS----------MDKTVRLWHLSSKTCLKIFSHS--------DYVTCIQFNPVDDRYFISGSL--DAK 631 (927)
Q Consensus 573 l~~spd-~~L~Sgs----------~DgtV~lWDl~t~~~~~~~~h~--------~~V~~v~fsp~dg~~L~sgs~--Dg~ 631 (927)
++++|+ .+|+.+. .++.|.+||..+.+.+..+.-. .....++|+| ++++|+++.. ++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCe
Confidence 778887 4455443 3678999999999998887522 2566799999 9999888864 688
Q ss_pred EEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC-CeeeeecccccccccccCCCCCeE-EEEEc
Q 002407 632 VRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKIT-GFQFA 709 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vt-sl~fs 709 (927)
|.++|+.+++++..+..... ...+....+.+++.+.||.+.+.++.. ++...... ..+......+. ...|.
T Consensus 162 VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-----~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-----EVFHPEDEFLINHPAYS 234 (386)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-----CCCSCTTSCBCSCCEEE
T ss_pred EEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-----ceeccccccccccceeE
Confidence 99999999999887765542 223333456777888899999999876 55432111 00011111221 23554
Q ss_pred -CCCCcEEEEEECCCcEEEEECCcc----eEEEEeec--------CCcceEEEEEecCCCEEEEEEC----------CCc
Q 002407 710 -PGSSSEVLVTSADSRIRVVDGIDL----VHKFKGFR--------NTNSQISASLTANGRYVVSASE----------DSY 766 (927)
Q Consensus 710 -pdg~~~Llsgs~Dg~I~VwD~~~~----~~~~~~~~--------~~~~v~sv~fspdg~~Lasgs~----------Dg~ 766 (927)
+++ .++..+.++.|+++|.... ...+.... .......++++++++.|+.... ...
T Consensus 235 ~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~ 312 (386)
T 3sjl_D 235 QKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF 312 (386)
T ss_dssp TTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred cCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCE
Confidence 555 3445667899999996432 22222000 0111224677999998887653 256
Q ss_pred EEEEECCCCCCccc
Q 002407 767 VYVWKYEAESRPSR 780 (927)
Q Consensus 767 I~IWdl~s~~~~~~ 780 (927)
|.+.|+.+.+...+
T Consensus 313 V~viD~~t~kv~~~ 326 (386)
T 3sjl_D 313 VVVLDAKTGERLAK 326 (386)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEEECCCCeEEEE
Confidence 99999988765443
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=1.6e-06 Score=96.87 Aligned_cols=267 Identities=9% Similarity=0.011 Sum_probs=163.2
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEee--cC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQ--AH--NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK 497 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~--gH--~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~ 497 (927)
..++.+..++.|..|+..+++..-.+....-. .+ ...+.+.- ..++..|+.++.++.|..+|..+++........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 34566677778888888777654332211000 00 22232221 224557888889999999999888755432100
Q ss_pred cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecC
Q 002407 498 QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSK 577 (927)
Q Consensus 498 ~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~sp 577 (927)
. . ....++ . .
T Consensus 133 ~-----------------------------------------------------------~------~~~~p~----~-~ 142 (376)
T 3q7m_A 133 G-----------------------------------------------------------E------ALSRPV----V-S 142 (376)
T ss_dssp S-----------------------------------------------------------C------CCSCCE----E-E
T ss_pred C-----------------------------------------------------------c------eEcCCE----E-E
Confidence 0 0 000111 0 1
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE------EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVT------CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~------~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~ 651 (927)
++.++.++.++.|..+|..+++.+..+.....+. .... .+..++.+..++.|..+|..+++.+-.......
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccC
Confidence 4678888899999999999999888776443332 2222 245677888899999999999987654332211
Q ss_pred E-----E---EEEECC--CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 652 V-----T---AACYTP--DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 652 V-----~---sla~sp--dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
. . .+...| .+..+++++.++.+..+|..+++....... .....+... +. .|++++.
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----------~~~~~~~~~--~~-~l~~~~~ 285 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-----------GSVNDFIVD--GN-RIYLVDQ 285 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-----------CCEEEEEEE--TT-EEEEEET
T ss_pred CCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-----------CCCCCceEE--CC-EEEEEcC
Confidence 0 0 011111 356788888899999999999987755321 223444443 23 6888889
Q ss_pred CCcEEEEECCcceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 722 DSRIRVVDGIDLVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 722 Dg~I~VwD~~~~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
++.|..+|..+....+.... .........+ .+..|+.++.+|.|++||..+++..
T Consensus 286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999765555444331 1112222222 2567888899999999999987654
No 223
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.76 E-value=0.00013 Score=90.15 Aligned_cols=320 Identities=10% Similarity=0.137 Sum_probs=192.5
Q ss_pred eeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCccccee
Q 002407 415 SATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGEL 494 (927)
Q Consensus 415 sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l 494 (927)
+...|....+|.|...+ +..|+..+..+...... . ......|++|...++|.+.+.. . +.|.+|+..+++.....
T Consensus 92 ~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~-~-~~~~~~i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~ 166 (795)
T 4a2l_A 92 IVKTDSQGRVWIGTRDG-LSRYDEEKDIFQNFFYE-K-NGKHLQVNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDS 166 (795)
T ss_dssp EEEECTTSCEEEEESSC-EEEEETTTTEEEEECCE-E-TTEECCCCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSS
T ss_pred EEEECCCCCEEEEeCCc-hheeCCCCCeEEecccc-c-cCCCceEEEEEECCCCCEEEEE-C-CceEEEECCCCEEEecc
Confidence 33456666788888765 68888776655432210 0 0001128999999888765544 3 45888987654322110
Q ss_pred ecccccCcccc-EEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEE--ccCCCCEE
Q 002407 495 LEKQEDGHLNM-LLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF--QGHLDDVL 571 (927)
Q Consensus 495 ~~~~~~~~~~~-v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l--~gH~~~V~ 571 (927)
....... +..+...+++.+.+.....+.... +...+....+ ..+...|.
T Consensus 167 ----~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~------------------------~~~~~~~~~~~~~~~~~~i~ 218 (795)
T 4a2l_A 167 ----FSTAMHKTIASTLYRQGDQIYIGTSTDGLYTY------------------------SITQKTFEKVIPILGTKQIQ 218 (795)
T ss_dssp ----SCHHHHTCCEEEEEEETTEEEEEESSSCEEEE------------------------ETTTCCEEECC----CCCEE
T ss_pred ----CCCCCCcceEEEEECCCCCEEEEECCCCEEEE------------------------eCCCCeEEEecCCCCCCeeE
Confidence 0000112 444444455555543322222111 1111111111 11345688
Q ss_pred EEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 572 DLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 572 ~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
+|...+++.|..++.++-|.+||..+++...... ....|.++...+ ++.+. .|+.+ -|.+||..+++..
T Consensus 219 ~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~ 295 (795)
T 4a2l_A 219 AILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLW-IGTFN-DLNIYHEGTDSFA 295 (795)
T ss_dssp EEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEE-EEESS-CEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEE-EEeCC-hhheEcCCCCeEE
Confidence 8888778888888876669999988876544321 135699999887 66644 45555 5899998887765
Q ss_pred EeccC--------CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 644 DWNDL--------HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 644 ~~~~~--------~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
..... ...|.++...++|. |.+|+.++-|.+|+..+........... ...-....|.++...+++.
T Consensus 296 ~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~---~~~l~~~~V~~i~~d~~g~-- 369 (795)
T 4a2l_A 296 SYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPY---KNSLSDNVVSCIVEDKDKN-- 369 (795)
T ss_dssp EECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTT---SSSCSCSSEEEEEECTTSC--
T ss_pred EEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCC---CCCCCCCeeEEEEECCCCC--
Confidence 54321 25799999999886 6678887889999876554322111000 0112345699999888774
Q ss_pred EEEEECCCcEEEEECCcc-eEEEEee-------cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 716 VLVTSADSRIRVVDGIDL-VHKFKGF-------RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~-~~~~~~~-------~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
|.+|+.++-|..||.... ...+... .....|.+++..++|++|..|+.++-|.+|+..++.
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 778888888999996532 2223211 123568888888899856677777779999987653
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.74 E-value=3e-07 Score=105.13 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=122.4
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEeccCC--------
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQVVDWNDLH-------- 649 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~~~~-------- 649 (927)
+.|.++|..+++.+..+.-...- .++++| ++++|+++. .++.|.++|..+.+++..+...
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence 69999999999999999844444 899999 888887775 3678999999999888755432
Q ss_pred CcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 650 EMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
.....+.|+|||++++++.. ++.|.++|+.+++.+..+.+. . +....|++...+++.+.||.+.+
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~--------g-----~~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP--------D-----CYHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--------S-----EEEEEEEETTEEEEEETTSSEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC--------C-----ceeeccCCCcEEEEEcCCCCEEE
Confidence 24567899999999999874 578999999999988775431 1 12344555456677777777777
Q ss_pred EECCcc--eEEEE-ee-cCCcce-EEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 728 VDGIDL--VHKFK-GF-RNTNSQ-ISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~~~--~~~~~-~~-~~~~~v-~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.+.... ..... .. ....++ ..+.|.+++..++..+..+.|++.|+...
T Consensus 244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~ 296 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAE 296 (426)
T ss_dssp EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSS
T ss_pred EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCC
Confidence 775221 11100 00 011111 23567899888887788899999998653
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.69 E-value=1.9e-07 Score=104.92 Aligned_cols=268 Identities=10% Similarity=-0.040 Sum_probs=157.4
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEecCcCcccceeecccccC
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAG----------EDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs----------~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
+|.++|..+.+....+ ..-..+ .+.|+|||++|+.+. .++.|.+||+.+.+...++.....
T Consensus 47 ~vsvID~~t~~v~~~i-----~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~-- 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHS-----LGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDA-- 117 (368)
T ss_dssp EEEEEETTTTEEEEEE-----EECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTS--
T ss_pred eEEEEECCCCeEEEEE-----eCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCc--
Confidence 7888887766654433 333345 799999999888886 378999999998876665421000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC-cE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS-QH 580 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd-~~ 580 (927)
..+ ..+ .....++++|| ++
T Consensus 118 -------------~~~---------------------------------------------~~g--~~P~~ia~SpDGk~ 137 (368)
T 1mda_H 118 -------------PRF---------------------------------------------SVG--PRVHIIGNCASSAC 137 (368)
T ss_dssp -------------CSC---------------------------------------------CBS--CCTTSEEECTTSSC
T ss_pred -------------ccc---------------------------------------------ccC--CCcceEEEcCCCCE
Confidence 000 000 11234788998 56
Q ss_pred EEEEeC--CCcEEE--EeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-----CcEEEe----cc
Q 002407 581 LLSSSM--DKTVRL--WHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-----RQVVDW----ND 647 (927)
Q Consensus 581 L~Sgs~--DgtV~l--WDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-----~~~v~~----~~ 647 (927)
|+++.. ...|.+ +|+.+ +..+..... +.+.|.....+++.+.|+.+.+.++.+ ++.+.. ..
T Consensus 138 lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~ 211 (368)
T 1mda_H 138 LLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp EEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred EEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence 777764 467888 99887 455542222 223442445666777899988889886 443211 11
Q ss_pred C-CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCe--eeeeccccccccc-ccCCCCCeEEEEEcCCCCcEEEEEE---
Q 002407 648 L-HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENK--LQQKSPINLQNKK-KRSHQRKITGFQFAPGSSSEVLVTS--- 720 (927)
Q Consensus 648 ~-~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~--~~~~~~i~~~~~~-~~~h~~~Vtsl~fspdg~~~Llsgs--- 720 (927)
. ..+. . .+++..++..+. +.+.+.|+.... ....+.+...... ..........++|+|++..++++..
T Consensus 212 vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~ 286 (368)
T 1mda_H 212 CSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp BCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred CCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecccc
Confidence 1 1232 3 566666666666 999999997543 2222211000000 0000111112679999885554444
Q ss_pred C-----CCcEEEEECCcceEEEEeecCCcceEEEEEecCCC-EEEEEE-CCCcEEEEECCCCCCccc
Q 002407 721 A-----DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGR-YVVSAS-EDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 721 ~-----Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~-~Lasgs-~Dg~I~IWdl~s~~~~~~ 780 (927)
. ++.+.++|..+....-.... ......++|+|||+ ++++.. .++.|.++|+.+.+....
T Consensus 287 ~~~~~~~~~~~ViD~~t~~vv~~i~v-g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~ 352 (368)
T 1mda_H 287 RSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred CcccccCCCEEEEECCCCeEEEEEEC-CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEE
Confidence 2 23566999755433222211 12467899999998 456666 599999999998765443
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.68 E-value=3.3e-06 Score=91.59 Aligned_cols=198 Identities=12% Similarity=0.099 Sum_probs=130.7
Q ss_pred CceEEEccCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
..+..+..+......+.|+++ + .+++...++.|..|+. +++......+...+..+++++ +++++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEE
Confidence 445555566677889999998 4 4677777899999998 455433333667789999999 88876665556789999
Q ss_pred eCCCCcEEEeccC-----CCcEEEEEECCCCCEEEE----EEC-------------CCeEEEEECCCCeeeeeccccccc
Q 002407 636 SIPERQVVDWNDL-----HEMVTAACYTPDGQGALV----GSY-------------KGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 636 Dl~t~~~v~~~~~-----~~~V~sla~spdg~~l~t----gs~-------------Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
+.. ++....... ...+..+++.|+|.++++ |.. .+.|+.||..+++.....
T Consensus 113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~------ 185 (305)
T 3dr2_A 113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA------ 185 (305)
T ss_dssp CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE------
T ss_pred CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe------
Confidence 986 554433221 134678999999998776 332 256888887666544321
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEEECC------CcEEEEECCcc-e---EEEEeecCCcceEEEEEecCCCEEEEEEC
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVTSAD------SRIRVVDGIDL-V---HKFKGFRNTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsgs~D------g~I~VwD~~~~-~---~~~~~~~~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.......++|+|++. .|+++... +.|.+|+.... + ..+... .......++++++|++.++. .
T Consensus 186 -----~~~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv~~-~ 257 (305)
T 3dr2_A 186 -----DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWSSS-G 257 (305)
T ss_dssp -----EESSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEECC-S
T ss_pred -----cCCCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEEec-C
Confidence 123467899999987 45555443 78999985321 1 111111 12334568899999955544 4
Q ss_pred CCcEEEEECC
Q 002407 764 DSYVYVWKYE 773 (927)
Q Consensus 764 Dg~I~IWdl~ 773 (927)
++ |++|+..
T Consensus 258 ~g-v~~~~~~ 266 (305)
T 3dr2_A 258 TG-VCVFDSD 266 (305)
T ss_dssp SE-EEEECTT
T ss_pred Cc-EEEECCC
Confidence 44 9999874
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.66 E-value=9.5e-07 Score=107.72 Aligned_cols=194 Identities=19% Similarity=0.156 Sum_probs=124.6
Q ss_pred CCCCEEEEEecCC-cEEEE-E----eCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC---------
Q 002407 566 HLDDVLDLSWSKS-QHLLS-S----SMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--------- 630 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~S-g----s~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--------- 630 (927)
|...+..++|+|| .+|+. . +...+|++||+.+++.+...........++|+ |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL--GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE--TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe--CCCEEEEEEecCccccccccc
Confidence 5557888999999 45553 2 22357999999999876542222223577898 677788777774
Q ss_pred ----cEEEEeCCCCc----EEEecc--CCCcEEEEEECCCCCEEEEEEC----CCeEEEEECCCCee-eeeccccccccc
Q 002407 631 ----KVRIWSIPERQ----VVDWND--LHEMVTAACYTPDGQGALVGSY----KGSCHLYNTSENKL-QQKSPINLQNKK 695 (927)
Q Consensus 631 ----~I~IWDl~t~~----~v~~~~--~~~~V~sla~spdg~~l~tgs~----Dg~I~IwDl~~~~~-~~~~~i~~~~~~ 695 (927)
.|++|++.+.. ++.... +...+..+.|+|||++|+.... ...|+++|+.++.. ...+
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l-------- 276 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV-------- 276 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE--------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE--------
Confidence 39999998754 232222 2345788999999999876543 24899999977631 1111
Q ss_pred ccCCCCCeEEEEEcCCCCcEEEEEECC---CcEEEEECCcce----EEEEeecCCcceEEEEEecCCCEEEEEEC-CC--
Q 002407 696 KRSHQRKITGFQFAPGSSSEVLVTSAD---SRIRVVDGIDLV----HKFKGFRNTNSQISASLTANGRYVVSASE-DS-- 765 (927)
Q Consensus 696 ~~~h~~~Vtsl~fspdg~~~Llsgs~D---g~I~VwD~~~~~----~~~~~~~~~~~v~sv~fspdg~~Lasgs~-Dg-- 765 (927)
..+....... +.+++..+++.+..+ +.|.++|..... ..+..+. ..+. .|++++++|+.... ++
T Consensus 277 -~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 -QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp -ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCE--EEEEETTEEEEEEEETTEE
T ss_pred -eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC--CCEE--EEEEECCEEEEEEEECCee
Confidence 1333444444 666677566666544 678889864321 3444432 2333 88899988877665 43
Q ss_pred cEEEEECCCC
Q 002407 766 YVYVWKYEAE 775 (927)
Q Consensus 766 ~I~IWdl~s~ 775 (927)
.|++|++...
T Consensus 351 ~l~~~d~~g~ 360 (693)
T 3iuj_A 351 RVEQFDYEGK 360 (693)
T ss_dssp EEEEECTTSC
T ss_pred EEEEEECCCC
Confidence 6889988753
No 228
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.62 E-value=0.0003 Score=86.71 Aligned_cols=333 Identities=9% Similarity=0.054 Sum_probs=189.5
Q ss_pred cCCCCeEEEccCceEEEEeccCcccccceeeeeE--eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceee
Q 002407 418 DDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELL 495 (927)
Q Consensus 418 ~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~--L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~ 495 (927)
.+....+|.|....-|..|+...+++........ ..-....|.+|...++|.+.+. ... -|.+|+..+++...-..
T Consensus 170 ~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~ 247 (781)
T 3v9f_A 170 EAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHN 247 (781)
T ss_dssp EEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC---
T ss_pred ECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEc
Confidence 3445567878776457788876665433211000 0012357999999999876554 344 58889976654322111
Q ss_pred ccc--ccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEE
Q 002407 496 EKQ--EDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDL 573 (927)
Q Consensus 496 ~~~--~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l 573 (927)
... .......|.++....++.+.+.....+............... ... ...+..... ...-....|.+|
T Consensus 248 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~----~~~-f~~~~~~~~----~~~l~~~~v~~i 318 (781)
T 3v9f_A 248 NPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE----QIR-FEFIREGDN----NYSLSNASARYI 318 (781)
T ss_dssp --------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC--------------CEEECBCSS----TTSBSSSCEEEE
T ss_pred CCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee----ccc-cccccCCCC----CCCCCCCeEEEE
Confidence 000 011234567777777777666553333322211111000000 000 000000000 001134578999
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe----------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS----------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~----------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
...+++.|..|+.++-|..++..+........ ....|.++...+ ++. |..|+.++-|.+|+..++...
T Consensus 319 ~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~ 396 (781)
T 3v9f_A 319 FQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAI 396 (781)
T ss_dssp EECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEE
T ss_pred EEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEE
Confidence 98888889999988889999988765433211 235689998876 565 556676677999998765443
Q ss_pred Eec----cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 644 DWN----DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 644 ~~~----~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
... .....|.+++..++|. |.+|+.++-|..|+..+++....... ......|.++...+++ .|.++
T Consensus 397 ~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~-------~~~~~~v~~i~~d~~g--~lwig 466 (781)
T 3v9f_A 397 YNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELE-------KNELLDVRVFYEDKNK--KIWIG 466 (781)
T ss_dssp CC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCST-------TTCCCCEEEEEECTTS--EEEEE
T ss_pred EccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccC-------CCCCCeEEEEEECCCC--CEEEE
Confidence 321 1235789999888876 55577777799999887765432110 1234678999888876 46667
Q ss_pred ECCCcEEEEECCcc-eEEEEeec----CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 720 SADSRIRVVDGIDL-VHKFKGFR----NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 720 s~Dg~I~VwD~~~~-~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+. +-|.+||.... ...+.... ....+.++...++|.+.+. +.++-|+.|+..+.
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQ 525 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCC
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCC
Confidence 66 56888885432 22222111 1356888888888876654 44344888887653
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.61 E-value=1.2e-05 Score=89.75 Aligned_cols=262 Identities=10% Similarity=0.034 Sum_probs=156.1
Q ss_pred CeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccC
Q 002407 422 DVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDG 501 (927)
Q Consensus 422 ~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~ 501 (927)
..++.+..++.|..++..+++..-.+. +.+ .......+ .+..|+.++.++.|..+|..+++.+.......
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~---~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--- 173 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTK---VAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDM--- 173 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEE---CSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEe---CCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC---
Confidence 345667777888888887776543221 111 11111112 13477888889999999998887555431000
Q ss_pred ccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEE
Q 002407 502 HLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHL 581 (927)
Q Consensus 502 ~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L 581 (927)
+...+.+...++.. ++.+
T Consensus 174 ---------------------------------------------------------~~~~~~~~~~~~~~-----~~~v 191 (376)
T 3q7m_A 174 ---------------------------------------------------------PSLSLRGESAPTTA-----FGAA 191 (376)
T ss_dssp --------------------------------------------------------------CCCCCCEEE-----TTEE
T ss_pred ---------------------------------------------------------CceeecCCCCcEEE-----CCEE
Confidence 00000111111111 4678
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEecCCce-----E---EEEEcc-CCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcE
Q 002407 582 LSSSMDKTVRLWHLSSKTCLKIFSHSDYV-----T---CIQFNP-VDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 582 ~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V-----~---~v~fsp-~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V 652 (927)
+.+..++.|..+|..+++.+..+....+. . .+...| ..+..++.++.++.|..+|..+++.+...... ..
T Consensus 192 ~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~ 270 (376)
T 3q7m_A 192 VVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SV 270 (376)
T ss_dssp EECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CC
Confidence 88888999999999999988777532110 0 010111 02456778888999999999999877544433 34
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID 732 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~ 732 (927)
..+.. ++..+++++.++.|..+|..+++....... .....+...... +. .|++++.++.|+++|..+
T Consensus 271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~--------~~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~t 337 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD--------LLHRLLTSPVLY--NG-NLVVGDSEGYLHWINVED 337 (376)
T ss_dssp EEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT--------TTTSCCCCCEEE--TT-EEEEECTTSEEEEEETTT
T ss_pred CCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc--------cCCCcccCCEEE--CC-EEEEEeCCCeEEEEECCC
Confidence 44443 466888889999999999999987655321 111112222222 22 788899999999999655
Q ss_pred ceEEEEeecCCcceEE-EEEecCCCEEEEEECCCcEEEEE
Q 002407 733 LVHKFKGFRNTNSQIS-ASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 733 ~~~~~~~~~~~~~v~s-v~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.............+.. ... .+..|+.++.+|.|+.|+
T Consensus 338 G~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 338 GRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 4443333221222221 122 245788889999999987
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=4.3e-06 Score=101.67 Aligned_cols=177 Identities=7% Similarity=0.083 Sum_probs=117.5
Q ss_pred EEEecCC-cEEEEEeCCC-------------------cEEEEeCCCCcEEEEEe---cC-------CceEEEEEccCCC-
Q 002407 572 DLSWSKS-QHLLSSSMDK-------------------TVRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDD- 620 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~Dg-------------------tV~lWDl~t~~~~~~~~---h~-------~~V~~v~fsp~dg- 620 (927)
.+++.++ +.|+.+..++ .|..+|..+++.+..+. |. .....+.... ++
T Consensus 247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~ 325 (677)
T 1kb0_A 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGK 325 (677)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCc
Confidence 5677776 7787777654 59999999999998876 21 1222333333 56
Q ss_pred --CEEEEEECCCcEEEEeCCCCcEEEeccCC-----------C-cE------------------------EEEEECCCCC
Q 002407 621 --RYFISGSLDAKVRIWSIPERQVVDWNDLH-----------E-MV------------------------TAACYTPDGQ 662 (927)
Q Consensus 621 --~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~-----------~-~V------------------------~sla~spdg~ 662 (927)
..|+.++.+|.|+++|..+++++...... . .+ ..++|+|++.
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 68999999999999999999987533211 0 01 1468899988
Q ss_pred EEEEEECC-------------------------------------------CeEEEEECCCCeeeeecccccccccccCC
Q 002407 663 GALVGSYK-------------------------------------------GSCHLYNTSENKLQQKSPINLQNKKKRSH 699 (927)
Q Consensus 663 ~l~tgs~D-------------------------------------------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h 699 (927)
++++...+ |.|..||+.+++.+.....
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------- 475 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------- 475 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----------
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----------
Confidence 88886542 7899999999998766532
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC-CcceEEEEEecCCCEEEE
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN-TNSQISASLTANGRYVVS 760 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~~Las 760 (927)
...+....+...+. ++++++.|+.+++||..+.......... .....-+.|..+|+.++.
T Consensus 476 ~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 476 VSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SSSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcCcceEeCCC-EEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 12233334555555 7788899999999996554443333222 222234566788865443
No 231
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=0.00077 Score=83.01 Aligned_cols=324 Identities=9% Similarity=0.009 Sum_probs=190.9
Q ss_pred eecCCCCeEEEccCceEEEEeccCcccccceeeeeE--eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccce
Q 002407 416 ATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQE--IQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGE 493 (927)
Q Consensus 416 a~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~--L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~ 493 (927)
...|....+|.|... -+.+|+...+.+........ .......|.+|...++|. |..|...+-|.+++..+......
T Consensus 216 i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 293 (781)
T 3v9f_A 216 IYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLP 293 (781)
T ss_dssp EEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----
T ss_pred EEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeee
Confidence 334555567888776 58888877666544322110 011246799999998886 44455645688888876542211
Q ss_pred ee-------cc--cccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc
Q 002407 494 LL-------EK--QEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (927)
Q Consensus 494 l~-------~~--~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~ 564 (927)
.. .. ........|.++....++.+.+.....+...... .......+.
T Consensus 294 ~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~------------------------~~~~~~~~~ 349 (781)
T 3v9f_A 294 EQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISN------------------------APPTFHTWS 349 (781)
T ss_dssp ----CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECS------------------------SCCSCEEEC
T ss_pred eccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCC------------------------CCCcceeec
Confidence 10 00 0112234566666666766655443333221111 111111111
Q ss_pred ----------cCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE---e-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 565 ----------GHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF---S-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 565 ----------gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~---~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
-....|.++...+++.|..|+.++-|.+|+..++...... . ....|.++...+ ++. |..|+.++
T Consensus 350 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~ 427 (781)
T 3v9f_A 350 YSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLG 427 (781)
T ss_dssp ----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTE
T ss_pred cCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccC
Confidence 1235689999888888999998888999998765432211 1 346789998876 665 45577777
Q ss_pred cEEEEeCCCCcEEEecc---CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVDWND---LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~---~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|..++..+++...... ....|.++...++|. |.+|+. +-|.+||..+++........ ........|.++.
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~----~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTS----NSQLLENFVRSIA 501 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTT----TSSCSCSCEEEEE
T ss_pred CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCc----ccccccceeEEEE
Confidence 79999988877655432 246799999888875 556666 56889998876543322110 0011246799999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCcc-eEEEEee--cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGF--RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
..+++. |.+++..+-|..||.... ...+... .....|.++...++|.+.++. .+|-|..|+..+..
T Consensus 502 ~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 502 QDSEGR--FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp ECTTCC--EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred EcCCCC--EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 888774 666776555778885432 2222211 123467888888888766554 46654888876543
No 232
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.54 E-value=1.6e-05 Score=84.94 Aligned_cols=201 Identities=5% Similarity=-0.026 Sum_probs=137.7
Q ss_pred CEEEEEEcCCCCEEEEEeC--CCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeeccccc
Q 002407 458 SIWSIKFSLDGRYLASAGE--DCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRS 535 (927)
Q Consensus 458 ~I~~vafSpdG~~LaSgs~--DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~ 535 (927)
....|.|++|+.++++.+. ++.|++.|+.+++....+...
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~-------------------------------------- 63 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD-------------------------------------- 63 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC--------------------------------------
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC--------------------------------------
Confidence 3689999999866666554 679999999988765543100
Q ss_pred ccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEE
Q 002407 536 INRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHS-DYVTCIQ 614 (927)
Q Consensus 536 ~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~-~~V~~v~ 614 (927)
.+ .....+++..+...++.-.++.|.++|..+.+.+..+... .. ...
T Consensus 64 -----------------------------~~-~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~g 111 (266)
T 2iwa_A 64 -----------------------------DS-YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWG 111 (266)
T ss_dssp -----------------------------TT-CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCE
T ss_pred -----------------------------CC-cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEE
Confidence 00 0112344444344455556889999999999999988754 32 234
Q ss_pred EccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecc
Q 002407 615 FNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSP 688 (927)
Q Consensus 615 fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~ 688 (927)
+++ +++.|+++..++.|.++|..+.+.+...... ..++.+.|. +|..++....++.|.+.|+.+++....+.
T Consensus 112 lt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 112 LAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred EEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 556 6666666667889999999998877654432 246788888 67555444467899999999999888776
Q ss_pred cccc-c---ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEEC
Q 002407 689 INLQ-N---KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDG 730 (927)
Q Consensus 689 i~~~-~---~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~ 730 (927)
+... . ..........++++|+|+++.+++++.....|.+.+.
T Consensus 190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 5311 0 0011223467999999999877888888899988874
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.52 E-value=7.6e-06 Score=99.67 Aligned_cols=180 Identities=9% Similarity=0.104 Sum_probs=116.4
Q ss_pred EEEecCC-cEEEEEeCCCc-------------------EEEEeCCCCcEEEEEe---cC-------CceEEEEEccCCCC
Q 002407 572 DLSWSKS-QHLLSSSMDKT-------------------VRLWHLSSKTCLKIFS---HS-------DYVTCIQFNPVDDR 621 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~Dgt-------------------V~lWDl~t~~~~~~~~---h~-------~~V~~v~fsp~dg~ 621 (927)
.+++.++ ++|+.+..++. |..||..+++.+..+. |. ..+....... +++
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI-DGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc-CCc
Confidence 5677776 88888887764 9999999999998876 21 1122222222 454
Q ss_pred ---EEEEEECCCcEEEEeCCCCcEEEeccCCC----------------------------------------cEEEEEEC
Q 002407 622 ---YFISGSLDAKVRIWSIPERQVVDWNDLHE----------------------------------------MVTAACYT 658 (927)
Q Consensus 622 ---~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~----------------------------------------~V~sla~s 658 (927)
.|+.++.+|.|+++|..+++++....... ....++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999999873211110 01126888
Q ss_pred CCCCEEEEEEC---------------------------------------------CCeEEEEECCCCeeeeeccccccc
Q 002407 659 PDGQGALVGSY---------------------------------------------KGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 659 pdg~~l~tgs~---------------------------------------------Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
|+..++++... +|.|+.||+.+++........
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--- 474 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--- 474 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES---
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC---
Confidence 98888887632 377999999999987765421
Q ss_pred ccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecC-CcceEEEEEecCCC-EEEEEEC
Q 002407 694 KKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN-TNSQISASLTANGR-YVVSASE 763 (927)
Q Consensus 694 ~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~-~Lasgs~ 763 (927)
..+..-.+...+. ++++++.|+.|++||..+.....+.... .....-+.|..+|+ |+++.+.
T Consensus 475 -------~~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 475 -------TIFNGGTLSTAGN-LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp -------SSCCCCEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred -------CCccCccceECCC-EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 1122223444444 7888999999999996655444433322 11123366778886 4444433
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.51 E-value=5.5e-06 Score=100.67 Aligned_cols=200 Identities=10% Similarity=0.054 Sum_probs=132.0
Q ss_pred CcEEEEEeC------CCcEEEEeCCCCcEEEEEecCCc---------------------------------eEEEEEccC
Q 002407 578 SQHLLSSSM------DKTVRLWHLSSKTCLKIFSHSDY---------------------------------VTCIQFNPV 618 (927)
Q Consensus 578 d~~L~Sgs~------DgtV~lWDl~t~~~~~~~~h~~~---------------------------------V~~v~fsp~ 618 (927)
++.++.++. ++.|+.||..+++.+..+..... ...++++|
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~- 252 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA- 252 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-
Confidence 356666553 79999999999999987762111 13578888
Q ss_pred CCCEEEEEECCC-------------------cEEEEeCCCCcEEEeccC--C--------CcEEEEEECCCC---CEEEE
Q 002407 619 DDRYFISGSLDA-------------------KVRIWSIPERQVVDWNDL--H--------EMVTAACYTPDG---QGALV 666 (927)
Q Consensus 619 dg~~L~sgs~Dg-------------------~I~IWDl~t~~~v~~~~~--~--------~~V~sla~spdg---~~l~t 666 (927)
++.+|+.+..++ .|..+|..+++.+-.+.. + .....+....+| ..+++
T Consensus 253 ~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~ 332 (677)
T 1kb0_A 253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH 332 (677)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE
Confidence 777888877664 499999999998754322 1 123333444577 68999
Q ss_pred EECCCeEEEEECCCCeeeeecccccccc--cccCCCC------------------------CeEEEEEcCCCCcEEEEEE
Q 002407 667 GSYKGSCHLYNTSENKLQQKSPINLQNK--KKRSHQR------------------------KITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 667 gs~Dg~I~IwDl~~~~~~~~~~i~~~~~--~~~~h~~------------------------~Vtsl~fspdg~~~Llsgs 720 (927)
++.+|.|+++|..+++++....+....- ....... .-..++|+|+.. ++++..
T Consensus 333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~-~~yv~~ 411 (677)
T 1kb0_A 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG-LVYLPA 411 (677)
T ss_dssp CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT-EEEEEE
T ss_pred ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC-EEEEeC
Confidence 9999999999999999876654221000 0000000 012567888776 555543
Q ss_pred C-------------------------------------------CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 721 A-------------------------------------------DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 721 ~-------------------------------------------Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
. .+.|..||..+.....+... ..++....+..++.+
T Consensus 412 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~ 490 (677)
T 1kb0_A 412 QNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNV 490 (677)
T ss_dssp EECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTE
T ss_pred hhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCE
Confidence 2 27799999766555554432 233444556677888
Q ss_pred EEEEECCCcEEEEECCCCCCccc
Q 002407 758 VVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
++.++.||.+++||.++++....
T Consensus 491 v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 491 VFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp EEEECTTSEEEEEETTTCCEEEE
T ss_pred EEEECCCCcEEEEECCCCceeee
Confidence 99999999999999999876543
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.50 E-value=3.3e-06 Score=91.71 Aligned_cols=173 Identities=16% Similarity=0.079 Sum_probs=115.9
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-CCcEEEE
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-HEMVTAA 655 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-~~~V~sl 655 (927)
++.|+.++.++.|..+|.. ++....+. ....+.++...+ ++. |+.++.++.|..||.. ++.+..... ...+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 6788899999999999998 77766655 444566677765 555 6667788999999998 766543332 3456677
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc-ce
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID-LV 734 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~-~~ 734 (927)
.+.+++..+ +++ +.|..|| .+++...... .....+.++...+++ .|.+++.++.|..+|... ..
T Consensus 183 ~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~---------~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g~~~ 247 (330)
T 3hxj_A 183 SIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFY---------AGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDGTEK 247 (330)
T ss_dssp EECTTCCEE-EES--SSEEEEC-TTSCEEEEEC---------CSSCCCSCCEECTTS--CEEEEETTTEEEEECTTSCEE
T ss_pred EEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEc---------cCCcceeceEECCCC--eEEEEcCCCeEEEECCCCCEe
Confidence 777777744 444 8899999 6665544432 223457777888876 477788888899998432 22
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
..+.. ....+..+.+.+++ .|..++.+|.|+.+|.
T Consensus 248 ~~~~~--~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 248 WRFKT--GKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEC--SSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred EEeeC--CCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 22222 22223345555555 5666778888999985
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.49 E-value=8.5e-06 Score=99.25 Aligned_cols=200 Identities=11% Similarity=0.109 Sum_probs=129.3
Q ss_pred CcEEEEEe------CCCcEEEEeCCCCcEEEEEecC--C------------------------------ceEEEEEccCC
Q 002407 578 SQHLLSSS------MDKTVRLWHLSSKTCLKIFSHS--D------------------------------YVTCIQFNPVD 619 (927)
Q Consensus 578 d~~L~Sgs------~DgtV~lWDl~t~~~~~~~~h~--~------------------------------~V~~v~fsp~d 619 (927)
++.++.++ .++.|+.||..+++.+..+... . ....+++.| +
T Consensus 167 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~ 245 (689)
T 1yiq_A 167 NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-E 245 (689)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-T
T ss_pred CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-C
Confidence 45666554 3789999999999998877521 0 012578888 7
Q ss_pred CCEEEEEECCCc-------------------EEEEeCCCCcEEEeccC--C--------CcEEEEEECCCCC---EEEEE
Q 002407 620 DRYFISGSLDAK-------------------VRIWSIPERQVVDWNDL--H--------EMVTAACYTPDGQ---GALVG 667 (927)
Q Consensus 620 g~~L~sgs~Dg~-------------------I~IWDl~t~~~v~~~~~--~--------~~V~sla~spdg~---~l~tg 667 (927)
..+|+.+..++. |..||..+++.+-.+.. + ..+....+..+|+ .++.+
T Consensus 246 ~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~ 325 (689)
T 1yiq_A 246 LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA 325 (689)
T ss_dssp TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE
Confidence 788888887763 99999999998753322 1 1222223333665 78899
Q ss_pred ECCCeEEEEECCCCeeeeeccccccc---c--------------c--ccCCC-----------CCeEEEEEcCCCCcEEE
Q 002407 668 SYKGSCHLYNTSENKLQQKSPINLQN---K--------------K--KRSHQ-----------RKITGFQFAPGSSSEVL 717 (927)
Q Consensus 668 s~Dg~I~IwDl~~~~~~~~~~i~~~~---~--------------~--~~~h~-----------~~Vtsl~fspdg~~~Ll 717 (927)
+.+|.++++|..+++++....+.... . . ..... ..-..++|+|+.. +++
T Consensus 326 ~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~-~~y 404 (689)
T 1yiq_A 326 PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG-LVY 404 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT-EEE
T ss_pred CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC-EEE
Confidence 99999999999999987443221100 0 0 00000 0112367888766 455
Q ss_pred EEEC---------------------------------------------CCcEEEEECCcceEEEEeecCCcceEEEEEe
Q 002407 718 VTSA---------------------------------------------DSRIRVVDGIDLVHKFKGFRNTNSQISASLT 752 (927)
Q Consensus 718 sgs~---------------------------------------------Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fs 752 (927)
+... ++.|+.||..+....++...+ .......+.
T Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~ 483 (689)
T 1yiq_A 405 IPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLS 483 (689)
T ss_dssp EEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEE
T ss_pred EeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-CCccCccce
Confidence 4421 377999997665555544322 223333566
Q ss_pred cCCCEEEEEECCCcEEEEECCCCCCccc
Q 002407 753 ANGRYVVSASEDSYVYVWKYEAESRPSR 780 (927)
Q Consensus 753 pdg~~Lasgs~Dg~I~IWdl~s~~~~~~ 780 (927)
..+.+|+.++.||.|+.||.++++.+-+
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG~~lw~ 511 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTGEKLWE 511 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ECCCEEEEECCCCcEEEEECCCCcccee
Confidence 6788999999999999999999886643
No 237
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.48 E-value=2.4e-05 Score=82.72 Aligned_cols=196 Identities=10% Similarity=0.031 Sum_probs=128.9
Q ss_pred eEeecCCCC--EEEEEEcCCCCEEEEEeCCC--cEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCC
Q 002407 450 QEIQAHNGS--IWSIKFSLDGRYLASAGEDC--VIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDN 525 (927)
Q Consensus 450 q~L~gH~~~--I~~vafSpdG~~LaSgs~Dg--tVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~ 525 (927)
+++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+.++....
T Consensus 35 ~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~--------------------------- 85 (262)
T 3nol_A 35 HSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK--------------------------- 85 (262)
T ss_dssp EEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---------------------------
T ss_pred EEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---------------------------
Confidence 444 35433 4889999 777778888876 89999999887655531000
Q ss_pred ceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 526 HLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 526 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.---..++...+...+..-.++.+.+||..+.+.+..+.
T Consensus 86 -----------------------------------------~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 86 -----------------------------------------RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp -----------------------------------------TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred -----------------------------------------ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 000111223233333444468899999999999999998
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECC
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTS 679 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~ 679 (927)
....-..++ + ++..|+....++.|.++|..+.+++...... ..++.+.|. +|+.++..-.++.|.+.|..
T Consensus 125 ~~~eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~ 200 (262)
T 3nol_A 125 YDGEGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE 200 (262)
T ss_dssp CSSCCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred CCCCceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence 655434444 4 5666666666788999999998877654332 345667776 67655545468899999999
Q ss_pred CCeeeeeccccccccc---ccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 680 ENKLQQKSPINLQNKK---KRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~---~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
+++....+.+.-.... ........++|+|+|+.+.++++|
T Consensus 201 tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 201 TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 9999888765311111 112234679999999888555555
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.43 E-value=4.9e-08 Score=109.77 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=82.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceE-EEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCcEEEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVT-CIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEMVTAA 655 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~-~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sl 655 (927)
..+++++.|+.|+.||..+++.+..+... ..+. ...+. .+..|++++.++.|+.||..+++.+....... ..
T Consensus 50 ~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~ 124 (369)
T 2hz6_A 50 PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---AD 124 (369)
T ss_dssp CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC-----------------
T ss_pred CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cc
Confidence 35666789999999999998876665421 1111 01111 34567888889999999999998876554433 23
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCC--CcEEEEEECCCcEEEEECCcc
Q 002407 656 CYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGS--SSEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 656 a~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg--~~~Llsgs~Dg~I~VwD~~~~ 733 (927)
.++|++..+++++.++.|+.||..+++....+... . .....+.++. ...+++++.++.|+.||..+.
T Consensus 125 ~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-------~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 125 SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF-------D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp --------EEEEEEEEEEECCCSSSSSCCCEEEEE-------E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred cccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-------c----ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 45678889999999999999999998866554321 0 1112223321 025778899999999997655
Q ss_pred eEEEEeecCCcceE-EEEEecCCC
Q 002407 734 VHKFKGFRNTNSQI-SASLTANGR 756 (927)
Q Consensus 734 ~~~~~~~~~~~~v~-sv~fspdg~ 756 (927)
...+... ...++. ...++++|.
T Consensus 194 ~~~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 194 DVLWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSSC
T ss_pred cEEEEec-CCCceEEEEEecCCce
Confidence 4444433 233443 344555664
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.41 E-value=0.00018 Score=76.05 Aligned_cols=197 Identities=9% Similarity=0.022 Sum_probs=125.4
Q ss_pred CEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEec-CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe
Q 002407 569 DVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFSH-SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW 645 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~h-~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~ 645 (927)
.+..++|+++ +.|+.+ ...+.|..+++........+.. -.....|+++|..+.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 4678999985 665544 4578999999987665444432 257889999983344445555567899999876443333
Q ss_pred ccC-CCcEEEEEECCCCCEEEEEEC---CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 646 NDL-HEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 646 ~~~-~~~V~sla~spdg~~l~tgs~---Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
... ......++++|++..|.++.. .+.|..+++......... .........+++++++..++++-..
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~---------~~~~~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA---------QDNLGLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE---------CTTCSCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEE---------ECCCCCCcEEEEcCCCCEEEEEECC
Confidence 322 256889999997666666554 368888888653321111 1223467899999987756666677
Q ss_pred CCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCCC
Q 002407 722 DSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAESR 777 (927)
Q Consensus 722 Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~~ 777 (927)
.+.|.++|........... .......+++. +..|+.+. ..+.|.+++..+++.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~ 241 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE 241 (267)
T ss_dssp TTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred CCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence 7899999965422211111 22334566654 44554444 567899999877543
No 240
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.40 E-value=3.6e-08 Score=110.87 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=101.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC--CcEE-E
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH--EMVT-A 654 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~--~~V~-s 654 (927)
++.|++++.|+.|+.||..+++.+..+.. ..+.+..+.. ++..+++++.|+.|+.||..+++.+.....+ ..+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 47899999999999999999999988876 5666655666 6777888889999999999888765433222 1110 0
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-
Q 002407 655 ACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL- 733 (927)
Q Consensus 655 la~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~- 733 (927)
.++. ++..+++++.++.|+.||..+++....+.. +. ...++|++. .+++++.++.|+.||..+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---------AF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---------CC----cccccccCC-EEEEEecCCEEEEEECCCCC
Confidence 1111 345678888899999999999988765431 11 133456554 7888899999999996432
Q ss_pred -eEEEEeecCCcceEEEEEecCC---CEEEEEECCCcEEEEECCCCCC
Q 002407 734 -VHKFKGFRNTNSQISASLTANG---RYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 734 -~~~~~~~~~~~~v~sv~fspdg---~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
...+.... ....++..+. ..+++++.||.|+.||..+++.
T Consensus 152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 22222211 1122333332 4677788999999999988764
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.39 E-value=5.5e-05 Score=80.68 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=138.0
Q ss_pred ceEEEccCCC--CEEEEEecCCcEEEEEeC---CCcEEEEeCCCCcEEEEEecCC--ceEEEEEccCCCCEEEEEECCCc
Q 002407 559 PICSFQGHLD--DVLDLSWSKSQHLLSSSM---DKTVRLWHLSSKTCLKIFSHSD--YVTCIQFNPVDDRYFISGSLDAK 631 (927)
Q Consensus 559 ~i~~l~gH~~--~V~~l~~spd~~L~Sgs~---DgtV~lWDl~t~~~~~~~~h~~--~V~~v~fsp~dg~~L~sgs~Dg~ 631 (927)
.+.++ .|.. ....|.|++++.|+.++. ++.|+++|+.+++.+..+.... ....+++. ++.+.++.-.++.
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 34444 3443 367999999877666653 5899999999999998876333 33345554 3344455556789
Q ss_pred EEEEeCCCCcEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 632 VRIWSIPERQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+.++|..+.+++..+... .. ...+++||+.++++..++.|.++|..+.+....+.+... ......++.+.|.
T Consensus 88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~----~~p~~~~nele~~- 160 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN----GHRVIRLNELEYI- 160 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET----TEECCCEEEEEEE-
T ss_pred EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC----CcccccceeEEEE-
Confidence 999999999888766443 22 234566888888887889999999999888777654211 0112346788888
Q ss_pred CCCcEEEEEECCCcEEEEECCc--ceEEEEeec-----------CCcceEEEEEecCCCEE-EEEECCCcEEEEECCCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGID--LVHKFKGFR-----------NTNSQISASLTANGRYV-VSASEDSYVYVWKYEAE 775 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~-----------~~~~v~sv~fspdg~~L-asgs~Dg~I~IWdl~s~ 775 (927)
++ .+++....++.|.+.|..+ .+..+.... .......++|+|+++.| +++...+.|++.++...
T Consensus 161 dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 55 3444444678999999654 344444321 11245789999998755 55557788999888764
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.37 E-value=1.7e-05 Score=87.76 Aligned_cols=204 Identities=11% Similarity=0.054 Sum_probs=127.2
Q ss_pred CCEEEEEecCCcEEEEEe---CCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEEC-----CCc
Q 002407 568 DDVLDLSWSKSQHLLSSS---MDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSL-----DAK 631 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs---~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~-----Dg~ 631 (927)
..+..+++++++.++.+. .++.++||.+.+++ +..+. +-..+..|+|++ +++++++-.. +..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 678999999996554442 23435566555554 33332 346789999999 7776665433 578
Q ss_pred EEEEeCCCCcEEEeccCC-------CcEEEEEECCCCCEEEEE-E---CCCeEEEEECCCCeeeeeccc--cccc-----
Q 002407 632 VRIWSIPERQVVDWNDLH-------EMVTAACYTPDGQGALVG-S---YKGSCHLYNTSENKLQQKSPI--NLQN----- 693 (927)
Q Consensus 632 I~IWDl~t~~~v~~~~~~-------~~V~sla~spdg~~l~tg-s---~Dg~I~IwDl~~~~~~~~~~i--~~~~----- 693 (927)
|.+||+.+++++..+... ..+..+++++++..++++ . .++.|.+||+.+++......- ....
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999998866544332 346889999865555444 4 578999999988776554311 0000
Q ss_pred ----cccc---C------CCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCcc----------eEEEEeecCCcceEEE
Q 002407 694 ----KKKR---S------HQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGIDL----------VHKFKGFRNTNSQISA 749 (927)
Q Consensus 694 ----~~~~---~------h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~~----------~~~~~~~~~~~~v~sv 749 (927)
.... . ....+..|+|+|++. .|+++... ..|..++...+ ...+...........+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 0000 0 113468999999987 45555544 46666652110 0000111112234568
Q ss_pred EEecCCCEEEEEECCCcEEEEECCC
Q 002407 750 SLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 750 ~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+++++|.++++...++.|.+|+..+
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTT
T ss_pred EECCCCCEEEEccCCCeEEEEECCC
Confidence 9999999999998899999999844
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.36 E-value=0.00022 Score=75.38 Aligned_cols=244 Identities=8% Similarity=-0.034 Sum_probs=138.5
Q ss_pred eEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 431 VRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASA-GEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 431 ~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSg-s~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
..|+.++...+..........+......+..++|++++..|+.+ ...+.|.+++...... ..+. .........+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~----~~~~~~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII----RQDLGSPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE----CTTCCCEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE----ECCCCCccEE
Confidence 46777776655443211111112223457899999976655554 4578999999875432 2221 1112334556
Q ss_pred ccCCCC-CeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc-cCCCCEEEEEecCC-cEEEEEeC
Q 002407 510 NGSPEP-TSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ-GHLDDVLDLSWSKS-QHLLSSSM 586 (927)
Q Consensus 510 ~~spd~-~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~-gH~~~V~~l~~spd-~~L~Sgs~ 586 (927)
++.+++ .+.++......+. ++++.++....+. ........++++|+ +.|+.+..
T Consensus 85 a~d~~~~~lyv~d~~~~~I~-----------------------~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIE-----------------------VAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EEETTTTEEEEEETTTTEEE-----------------------EEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEEecCCeEEEEECCCCEEE-----------------------EEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 666643 3333332223332 1222222222221 12245688999995 77766654
Q ss_pred ---CCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEE-EEECCCcEEEEeCCCCcEEEeccCCCcEEEEEECCCC
Q 002407 587 ---DKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFI-SGSLDAKVRIWSIPERQVVDWNDLHEMVTAACYTPDG 661 (927)
Q Consensus 587 ---DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~-sgs~Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg 661 (927)
.+.|..+++.......... .-.....++++| ++..|+ +-...+.|.++|+.................+++. +
T Consensus 142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~ 218 (267)
T 1npe_A 142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--G 218 (267)
T ss_dssp CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET-TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--T
T ss_pred CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcC-CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--C
Confidence 3688888886543322222 234678999999 665554 4445678999999866544443333455667654 4
Q ss_pred CEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCC
Q 002407 662 QGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSS 713 (927)
Q Consensus 662 ~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~ 713 (927)
..|+++. ..+.|.++|..+++....+.. .......++++.|++.
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~~~~~i~~--------g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISKEMDTFHP--------HKQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEECC--------SSCCCCCCEEEECSCC
T ss_pred CEEEEEECCCCeEEEEeCCCCCceEEEcc--------ccccccceeeecCccC
Confidence 5555555 468999999999887766531 2222466777887653
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.35 E-value=5.3e-05 Score=82.69 Aligned_cols=196 Identities=8% Similarity=0.011 Sum_probs=121.0
Q ss_pred CEEEEEecC-CcEEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEccCCCCEEEEEEC--------------
Q 002407 569 DVLDLSWSK-SQHLLSSSMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNPVDDRYFISGSL-------------- 628 (927)
Q Consensus 569 ~V~~l~~sp-d~~L~Sgs~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp~dg~~L~sgs~-------------- 628 (927)
.+..|++.+ ++.|+.+...+.|..+|..++....... .......+++.+.+++++++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~ 160 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT 160 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence 467889987 6888888777778999987654322221 12356889998734555555322
Q ss_pred ---CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 629 ---DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 629 ---Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
++.|..||..+++.......-.....++++|+|+.|+++ ...+.|.+|++..........+ ..... ..
T Consensus 161 ~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~-------~~~~g-P~ 232 (322)
T 2fp8_A 161 SDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL-------VKIPN-PG 232 (322)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE-------EECSS-EE
T ss_pred cCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE-------EeCCC-CC
Confidence 367888998777654433322445679999999977666 4568899999875321000000 00112 77
Q ss_pred EEEEcCCCCcEEEEEEC----------CCcEEEEECC-cceEEEEeecC--CcceEEEEEecCCCEEEEEECCCcEEEEE
Q 002407 705 GFQFAPGSSSEVLVTSA----------DSRIRVVDGI-DLVHKFKGFRN--TNSQISASLTANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~----------Dg~I~VwD~~-~~~~~~~~~~~--~~~v~sv~fspdg~~Lasgs~Dg~I~IWd 771 (927)
.+++.++|. ++++... .+.|..+|.. +....+..... ...+..+++ .+++++++....+.|.+++
T Consensus 233 gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 233 NIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 899999886 4555433 4678888853 33334433211 234555665 4666666666788899998
Q ss_pred CCC
Q 002407 772 YEA 774 (927)
Q Consensus 772 l~s 774 (927)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 864
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.33 E-value=9.9e-06 Score=95.05 Aligned_cols=185 Identities=9% Similarity=0.036 Sum_probs=116.6
Q ss_pred CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC-------------------------------------
Q 002407 588 KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA------------------------------------- 630 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg------------------------------------- 630 (927)
+.|.++|..+.+.+..+.-......++++| +++++++.+.+.
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCeEEEEEEeCCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 456677777777776666433456677777 777777766442
Q ss_pred -cEEEEeCCC--CcE-EEeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeee--cccccccccccCCCCCe
Q 002407 631 -KVRIWSIPE--RQV-VDWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQK--SPINLQNKKKRSHQRKI 703 (927)
Q Consensus 631 -~I~IWDl~t--~~~-v~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~--~~i~~~~~~~~~h~~~V 703 (927)
.|.+.|..+ ++. +..+........+.++|||+++++++ .+.+|.++|+.+.+.... +................
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 477777776 434 44444455677899999999887776 467899999986531100 00000000012344568
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCc------------ceEEEEeecCCcce-E----EEEEecCCCEEEEEEC---
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGID------------LVHKFKGFRNTNSQ-I----SASLTANGRYVVSASE--- 763 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~------------~~~~~~~~~~~~~v-~----sv~fspdg~~Lasgs~--- 763 (927)
..++|+|+| ..+++.-.|++|.+||... .+.++..+ ..+- . ...++|||++|+++..
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~--yqpGh~~~~~g~t~~~DGk~l~~~Nk~sk 410 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH--YQPGHLKTVMGETLDATNDWLVCLSKFSK 410 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS--SCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc--cccccceeccceEeCCCCCEEEEcCCCCc
Confidence 899999999 6777788999999999433 33333332 2111 1 2245799999999864
Q ss_pred CCc----------EEEEECCCCC
Q 002407 764 DSY----------VYVWKYEAES 776 (927)
Q Consensus 764 Dg~----------I~IWdl~s~~ 776 (927)
|.. -.++|+..++
T Consensus 411 dr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 411 DRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp TSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccCCCCCCCcceEEEcCCCc
Confidence 432 1889995543
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.31 E-value=4.6e-05 Score=86.61 Aligned_cols=187 Identities=7% Similarity=0.053 Sum_probs=126.9
Q ss_pred EEEEEeCCCcEEEEeCCCC----cEEEEEe-------cC-CceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCc
Q 002407 580 HLLSSSMDKTVRLWHLSSK----TCLKIFS-------HS-DYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQ 641 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~----~~~~~~~-------h~-~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~ 641 (927)
.++++-.++.|.++|+.+. +..+++. .. .....+...| ++ +++++..+ +.|.++|..+.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 3566777899999999765 6666662 11 2456678889 88 77776655 789999999999
Q ss_pred EEEeccCC----CcEEEEEECCCCCEEEEEE-------------------CCCeEEEEECCCCeeeeecccccccccccC
Q 002407 642 VVDWNDLH----EMVTAACYTPDGQGALVGS-------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRS 698 (927)
Q Consensus 642 ~v~~~~~~----~~V~sla~spdg~~l~tgs-------------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~ 698 (927)
++...... ..-..+-|+|+++.+++.. ...+|.+||+.+++...++.+. .
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg-------~ 248 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG-------E 248 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC-------T
T ss_pred EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC-------C
Confidence 88755432 2234577899999888874 3688999999998877765431 1
Q ss_pred CCCCeEEEEE--cCCCCcEEEEEE-----CCCcEEEEEC--Ccc--eEEEEeec----C------------CcceEEEEE
Q 002407 699 HQRKITGFQF--APGSSSEVLVTS-----ADSRIRVVDG--IDL--VHKFKGFR----N------------TNSQISASL 751 (927)
Q Consensus 699 h~~~Vtsl~f--spdg~~~Llsgs-----~Dg~I~VwD~--~~~--~~~~~~~~----~------------~~~v~sv~f 751 (927)
.......+.| +|+++..++++- .+++|.+|.. ... .+.+.... . ......+.+
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 1223445555 999986666666 7778887652 111 11111000 0 234567899
Q ss_pred ecCCCEEEEEEC-CCcEEEEECCCC
Q 002407 752 TANGRYVVSASE-DSYVYVWKYEAE 775 (927)
Q Consensus 752 spdg~~Lasgs~-Dg~I~IWdl~s~ 775 (927)
++||++|.++.. .+.|.+||+...
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSST
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 999999988775 678999999754
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.30 E-value=5.6e-05 Score=80.06 Aligned_cols=190 Identities=7% Similarity=-0.018 Sum_probs=129.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccc
Q 002407 457 GSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSI 536 (927)
Q Consensus 457 ~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~ 536 (927)
.-...|.|+ ++.++++.+.+|.|+++|+.+++.+.+++ ..
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l-~~-------------------------------------- 94 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMER-LG-------------------------------------- 94 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEE-CT--------------------------------------
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEEC-CC--------------------------------------
Confidence 345788897 46777888899999999999887655430 00
Q ss_pred cccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEc
Q 002407 537 NRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFN 616 (927)
Q Consensus 537 ~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fs 616 (927)
.---..+++..+...+..-.++.+.+||..+.+.+..+.....-+.+++
T Consensus 95 ------------------------------~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~- 143 (268)
T 3nok_A 95 ------------------------------NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCY- 143 (268)
T ss_dssp ------------------------------TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEE-
T ss_pred ------------------------------CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEec-
Confidence 0000113333334444455788999999999999999986555455554
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc
Q 002407 617 PVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN 690 (927)
Q Consensus 617 p~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~ 690 (927)
+++.|+.+..++.|.++|..+.+++...... ..++.+.|. +|+.++....+..|.+.|..+++.+..+.+.
T Consensus 144 --Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 144 --WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp --ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred --CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 5677777777889999999998877654432 255677776 7765544446789999999999998887654
Q ss_pred cc-ccc---ccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 691 LQ-NKK---KRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 691 ~~-~~~---~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
-. ... ........++|++.|+++.++++|-
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 11 100 1123356799999998886666653
No 248
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.22 E-value=0.00027 Score=74.04 Aligned_cols=138 Identities=10% Similarity=0.023 Sum_probs=96.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC------CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH------EMV 652 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~------~~V 652 (927)
......-.++.+.+||..+.+.+.++.....-..++ + ++..|+.+..++.|.++|..+.+.+...... ..+
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~l 152 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNL 152 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccc
Confidence 334445568899999999999999998655545555 4 5666666667889999999998877654432 356
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccc----cCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 653 TAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKK----RSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~----~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
+.+.+. +|+.++..-.+..|.+.|..+++....+.+.-..... .......++|++.|++..++++|-
T Consensus 153 NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 667765 6665544446789999999999998887654211111 123346799999998885555553
No 249
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.20 E-value=3.1e-05 Score=86.82 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=76.5
Q ss_pred EEEEeCCC----cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEE----------CCCcEEEEeCCCCcEEEec
Q 002407 581 LLSSSMDK----TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGS----------LDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 581 L~Sgs~Dg----tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs----------~Dg~I~IWDl~t~~~v~~~ 646 (927)
+++-..++ +|.++|..+++.+..+.-...- .+.|+| ++++++++. .++.|.+||+.+++.+..+
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I 112 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred EEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEE
Confidence 44444444 8889999999999999833333 799999 888888876 3678999999999988766
Q ss_pred cCC--------CcEEEEEECCCCCEEEEEEC--CCeEEE--EECCC
Q 002407 647 DLH--------EMVTAACYTPDGQGALVGSY--KGSCHL--YNTSE 680 (927)
Q Consensus 647 ~~~--------~~V~sla~spdg~~l~tgs~--Dg~I~I--wDl~~ 680 (927)
... .....++++|||++++++.. ...+.+ +|+.+
T Consensus 113 ~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 433 34567999999999999875 456888 88866
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.19 E-value=0.00012 Score=77.42 Aligned_cols=196 Identities=7% Similarity=0.011 Sum_probs=127.9
Q ss_pred eEEEccCCCC--EEEEEecCCcEEEEEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 560 ICSFQGHLDD--VLDLSWSKSQHLLSSSMDK--TVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 560 i~~l~gH~~~--V~~l~~spd~~L~Sgs~Dg--tV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+.++ .|... ...|.|+.+.++.+.+.+| .|+++|+.+++.+..+............+.++.+.+..-.++.+.+|
T Consensus 34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4444 35443 4788898434455666665 89999999999999887555554433333133444444458899999
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
|..+.+++..+.....-..+ +++++.|+.+..++.|.++|..+.+....+.+.... ..-..++.+.|. ++. +
T Consensus 113 D~~t~~~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g----~~~~~lNELe~~-~G~-l 184 (262)
T 3nol_A 113 NIRNLRQVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG----EELPELNELEWV-DGE-I 184 (262)
T ss_dssp ETTTCCEEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT----EECCCEEEEEEE-TTE-E
T ss_pred ECccCcEEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC----ccccccceeEEE-CCE-E
Confidence 99999988876655433333 467888888777888999999999888776542110 111345567776 453 4
Q ss_pred EEEEECCCcEEEEECCc--ceEEEEeec----------CCcceEEEEEecCCCEEEEEECC
Q 002407 716 VLVTSADSRIRVVDGID--LVHKFKGFR----------NTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~--~~~~~~~~~----------~~~~v~sv~fspdg~~Lasgs~D 764 (927)
++..-.+..|.+.|..+ .+..+.... ...-...++|+|+++.|+..+..
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 44444678999999643 444444321 12245789999998888777754
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.16 E-value=0.00013 Score=77.23 Aligned_cols=184 Identities=10% Similarity=0.009 Sum_probs=126.7
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEE--EEEccCCCCEEEEEECCCcEEEEeCCCCcEEEec
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTC--IQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~--v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~ 646 (927)
-...|.|+.+.++++.+.++.|+++|+.+++.+..+ ....... +++. .+.+++..-.++.+.+||..+.+++..+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 347888886666778888899999999999988777 4444443 5554 3455555556889999999999998876
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.....-..++ ++++.|+++..++.|.++|..+.+....+.+.... ..-..++.+.|. +|. +++..-.+..|.
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g----~~v~~lNeLe~~-dG~-lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG----QPVELINELECA-NGV-IYANIWHSSDVL 204 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT----EECCCEEEEEEE-TTE-EEEEETTCSEEE
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC----cccccccccEEe-CCE-EEEEECCCCeEE
Confidence 6554433444 67888888888999999999999988876653211 122345777777 453 444444678999
Q ss_pred EEECCc--ceEEEEeec-----------CCcceEEEEEecCCCEEEEEEC
Q 002407 727 VVDGID--LVHKFKGFR-----------NTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 727 VwD~~~--~~~~~~~~~-----------~~~~v~sv~fspdg~~Lasgs~ 763 (927)
+.|..+ .+..+.... ...-...++++|+++.|+..+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999643 444444321 1234578999998766665554
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.14 E-value=0.00035 Score=73.20 Aligned_cols=204 Identities=8% Similarity=-0.017 Sum_probs=132.4
Q ss_pred ceEEEccCCC--CEEEEEecCCcEEEEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEE
Q 002407 559 PICSFQGHLD--DVLDLSWSKSQHLLSSSMD--KTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRI 634 (927)
Q Consensus 559 ~i~~l~gH~~--~V~~l~~spd~~L~Sgs~D--gtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I 634 (927)
.+.++ .|.. -...|.|+++.++.+.+.+ ..|+.+|+.+++.+..+............+.++++++..-.++.+.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34444 4543 4668999875555566665 48999999999999988755444433333323445555556889999
Q ss_pred EeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 635 WSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 635 WDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
||..+.+++..+.....-..++ ++++.|+++..++.|.++|..+.+....+.+.... ..-..++.+.+. ++.
T Consensus 90 ~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g----~~~~~lNeLe~~-~G~- 161 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGG----RPLDNLNELEWV-NGE- 161 (243)
T ss_dssp EETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETT----EECCCEEEEEEE-TTE-
T ss_pred EECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCC----cccccceeeEEe-CCE-
Confidence 9999999988766654434444 57778888878899999999999888776643211 112345667766 342
Q ss_pred EEEEEECCCcEEEEECCc--ceEEEEeec-----------CCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 715 EVLVTSADSRIRVVDGID--LVHKFKGFR-----------NTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~--~~~~~~~~~-----------~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+++..-.+..|.+.|..+ .+..+.... ...-...++++|+++.|+..+.-- =++|.+
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v 231 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEI 231 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEE
Confidence 444444678899999543 344444221 123457899999887777766532 334444
No 253
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.12 E-value=0.0019 Score=69.80 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=109.2
Q ss_pred CEEEEEecCCcEEEEEeC--CC-cEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc--
Q 002407 569 DVLDLSWSKSQHLLSSSM--DK-TVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ-- 641 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~--Dg-tV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~-- 641 (927)
.+..|++.+++.|+.+.. ++ .|..++..+++...... .......+++.+ ++..+++-..++.|.++|..+++
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEe
Confidence 366788888855555542 22 46677777777654443 223345556555 55445544458889999987653
Q ss_pred EEEec---------cCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 642 VVDWN---------DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 642 ~v~~~---------~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+.... ..-.....+ +|++++|+++. ..+.|..|++.. +..... .. .........+++.+
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~-~~-------~~~~~~P~gi~vd~ 221 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP-EI-------FVEQTNIDDFAFDV 221 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCC-EE-------EEESCCCSSEEEBT
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc-EE-------EeccCCCCCeEECC
Confidence 22110 011234555 78887766654 467899999875 322111 00 01113456788999
Q ss_pred CCCcEEEEEECCCcEEEEECCcceEEEE-eecCCcceEEEEEe---cCCCEEEEEECCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDLVHKFK-GFRNTNSQISASLT---ANGRYVVSASEDS 765 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~~~~~~-~~~~~~~v~sv~fs---pdg~~Lasgs~Dg 765 (927)
+|. ++++....+.|.++|.......+. .........+++|. ++++.|+.++..+
T Consensus 222 dG~-l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 222 EGN-LYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCC-EEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCC-EEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 885 666666778999999653332222 22223567899998 8887777666544
No 254
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.03 E-value=0.0002 Score=86.89 Aligned_cols=191 Identities=12% Similarity=0.132 Sum_probs=120.5
Q ss_pred CCcEEEEeCCCCcEEEEEecC--C------------------------------ceEEEEEccCCCCEEEEEECCC----
Q 002407 587 DKTVRLWHLSSKTCLKIFSHS--D------------------------------YVTCIQFNPVDDRYFISGSLDA---- 630 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~--~------------------------------~V~~v~fsp~dg~~L~sgs~Dg---- 630 (927)
++.|+.+|..+++.+..+... . ....+++.| ...+++.+..++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 588999999999998877521 0 012468888 777888887766
Q ss_pred ---------------cEEEEeCCCCcEEEeccCC----------CcEEEEEECCCCC---EEEEEECCCeEEEEECCCCe
Q 002407 631 ---------------KVRIWSIPERQVVDWNDLH----------EMVTAACYTPDGQ---GALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 631 ---------------~I~IWDl~t~~~v~~~~~~----------~~V~sla~spdg~---~l~tgs~Dg~I~IwDl~~~~ 682 (927)
.|..+|..+++.+-.+... ..+....+..+|+ .+++++.+|.++++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 3999999999987543321 2233333344675 68899999999999999999
Q ss_pred eeeeccccccc-------c--------cccCCC------------CCeEEEEEcCCCCcEEEEE----------------
Q 002407 683 LQQKSPINLQN-------K--------KKRSHQ------------RKITGFQFAPGSSSEVLVT---------------- 719 (927)
Q Consensus 683 ~~~~~~i~~~~-------~--------~~~~h~------------~~Vtsl~fspdg~~~Llsg---------------- 719 (927)
++....+.... . ...... ..-..++++|+.. ++++.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g-~~yv~~~~~~~~~~~~~~~~~ 414 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG-LVYIPYQEVPGVYRNEGKDFV 414 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT-EEEEEEEECCEEECCCGGGCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC-EEEEeccccceEeeeeccccc
Confidence 87443221100 0 000000 0011256777655 33321
Q ss_pred --------------------ECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcc
Q 002407 720 --------------------SADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 720 --------------------s~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
..++.|..||..+.....+.... .......+...+.+|+.++.|+.|++||.++++...
T Consensus 415 ~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 415 TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 12378999997766555544322 223333445567889999999999999999987654
Q ss_pred c
Q 002407 780 R 780 (927)
Q Consensus 780 ~ 780 (927)
+
T Consensus 494 ~ 494 (668)
T 1kv9_A 494 Q 494 (668)
T ss_dssp E
T ss_pred E
Confidence 3
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.02 E-value=0.0017 Score=70.55 Aligned_cols=192 Identities=11% Similarity=0.023 Sum_probs=123.7
Q ss_pred CCEEEEEecCCcE-EEEEeCCCcEEEEeCCCCcEEEEEe-c-------------------CCceEEEEEccCCCCEEEEE
Q 002407 568 DDVLDLSWSKSQH-LLSSSMDKTVRLWHLSSKTCLKIFS-H-------------------SDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 568 ~~V~~l~~spd~~-L~Sgs~DgtV~lWDl~t~~~~~~~~-h-------------------~~~V~~v~fsp~dg~~L~sg 626 (927)
....+++|.+++. ++++..++.|..|+..+++...... . ...+..|++.+ +...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-QNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-TTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-CCCcEEEE
Confidence 4456788988854 8888889999999988765432211 0 13578899986 34456666
Q ss_pred ECCCcEEEEeCCCCcEEEeccC-----CCcEEEEEECC-CCCEEEEEEC-----------------CCeEEEEECCCCee
Q 002407 627 SLDAKVRIWSIPERQVVDWNDL-----HEMVTAACYTP-DGQGALVGSY-----------------KGSCHLYNTSENKL 683 (927)
Q Consensus 627 s~Dg~I~IWDl~t~~~v~~~~~-----~~~V~sla~sp-dg~~l~tgs~-----------------Dg~I~IwDl~~~~~ 683 (927)
...+.|..+|..+++...+... ...+..+++.+ +|...++-.. ++.|..||..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 5556688899876643322211 13578899999 9976665432 36788999877764
Q ss_pred eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----ceEEEEeecCCcceEEEEEecCCCEEE
Q 002407 684 QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----LVHKFKGFRNTNSQISASLTANGRYVV 759 (927)
Q Consensus 684 ~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----~~~~~~~~~~~~~v~sv~fspdg~~La 759 (927)
.... ........++|+|++..++++-...+.|.+|+... ....+.. ... ...++++++|++.+
T Consensus 178 ~~~~----------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 178 TLLL----------KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV 244 (322)
T ss_dssp EEEE----------EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred EEec----------cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence 3221 11123567899999874555556778999998542 1222222 122 67789999998777
Q ss_pred EEEC----------CCcEEEEECC
Q 002407 760 SASE----------DSYVYVWKYE 773 (927)
Q Consensus 760 sgs~----------Dg~I~IWdl~ 773 (927)
+... .+.|..++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECTT
T ss_pred EecCcccccccCCCccEEEEECCC
Confidence 6654 3556666653
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.00 E-value=7.9e-05 Score=87.47 Aligned_cols=185 Identities=13% Similarity=0.126 Sum_probs=129.4
Q ss_pred cEEEEEe-CCCcEEEEeCCCCcEEEEEe--cCCceEEEEE-c-cCCCCEEEEEEC------------------CCcEEEE
Q 002407 579 QHLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYVTCIQF-N-PVDDRYFISGSL------------------DAKVRIW 635 (927)
Q Consensus 579 ~~L~Sgs-~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~f-s-p~dg~~L~sgs~------------------Dg~I~IW 635 (927)
.+|+... .+..|.+.|+.+.++.+++. ....+..+++ . | ++.++++++. ++.+.++
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 3444444 45679999999999988665 4566889998 4 8 8888888852 4579999
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCC--------------------------------------eEEEEE
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKG--------------------------------------SCHLYN 677 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg--------------------------------------~I~IwD 677 (927)
|..+.+++...........++++|+|+++++.+.+. .|.+.|
T Consensus 181 D~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID 260 (595)
T 1fwx_A 181 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD 260 (595)
T ss_dssp ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred ECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence 999988877655544567788999999999988653 244444
Q ss_pred CCC--Cee-eeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcce-----------EEEEeecCC
Q 002407 678 TSE--NKL-QQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLV-----------HKFKGFRNT 743 (927)
Q Consensus 678 l~~--~~~-~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~-----------~~~~~~~~~ 743 (927)
..+ ++. ...+ .-.....++.++|||+.+++++..+.+|.++|..+.. .........
T Consensus 261 ~~~~~~~~~~~~I----------pvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG 330 (595)
T 1fwx_A 261 GRKEASSLFTRYI----------PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG 330 (595)
T ss_dssp CSGGGCCSSEEEE----------EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred CcccCCceeEEEE----------ecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence 444 211 1111 1223456789999999777777789999999976542 111222234
Q ss_pred cceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 744 NSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 744 ~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.....++|+++|...++.-.|+.|.+|++..
T Consensus 331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 4567899999994445556799999999976
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.95 E-value=0.0017 Score=70.24 Aligned_cols=199 Identities=10% Similarity=-0.027 Sum_probs=122.8
Q ss_pred CCEEEEEecCCcEEEEEe-CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKSQHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~ 644 (927)
.....++|++++.|+.+. ..+.|..||.... ....+.....+..|++.+ +++++++..... .|..++..++++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 467889999986555554 7889999998754 444555566789999999 888666554332 47777878887654
Q ss_pred eccC--CCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee-cccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WNDL--HEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~~~--~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.... ......++..+++..+++-..++.|+++|...+..... ..-..............+.+ +|++..++++-..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3322 23345566666554444444588999999876532111 00000000001122345555 7777756666677
Q ss_pred CCcEEEEECCc---c--eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECC
Q 002407 722 DSRIRVVDGID---L--VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYE 773 (927)
Q Consensus 722 Dg~I~VwD~~~---~--~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~ 773 (927)
.+.|.+|+... . ...+... .....++++++|+++++....+.|.+|+..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 88999999532 1 1222111 234567889999887777777889888754
No 258
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.91 E-value=0.0025 Score=67.39 Aligned_cols=208 Identities=11% Similarity=0.177 Sum_probs=135.1
Q ss_pred EEccCCCCEEEEEecCC-cEEE-EEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEccCCCCEEEEEECCCcEEEEeC
Q 002407 562 SFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFNPVDDRYFISGSLDAKVRIWSI 637 (927)
Q Consensus 562 ~l~gH~~~V~~l~~spd-~~L~-Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl 637 (927)
.+.+-...+..|+|.|+ +.|+ +...++.|...|.. ++.++.+... ...-.|++.+ ++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence 34566678999999987 6554 57778899999998 8888877632 5678899988 7777676656778999987
Q ss_pred CCCcE---EEec-------cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccc-cccccccCCCCCeEEE
Q 002407 638 PERQV---VDWN-------DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPIN-LQNKKKRSHQRKITGF 706 (927)
Q Consensus 638 ~t~~~---v~~~-------~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~-~~~~~~~~h~~~Vtsl 706 (927)
..... +... ........++|+|.++.|+++.......||.+........+.+. ............+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 65431 2211 12345689999999988888877666566655410000000100 0000011234567899
Q ss_pred EEcCCCCcEEEEEECCCcEEEEECCcc-eEEEEeecC-------CcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 707 QFAPGSSSEVLVTSADSRIRVVDGIDL-VHKFKGFRN-------TNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 707 ~fspdg~~~Llsgs~Dg~I~VwD~~~~-~~~~~~~~~-------~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+++|....+++.......|.++|.... +..+..... ....-.++|.++|++.++ ++-+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999988777777778888999995433 333333211 124568999999985555 77776776653
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.89 E-value=0.0023 Score=75.89 Aligned_cols=198 Identities=12% Similarity=0.044 Sum_probs=118.8
Q ss_pred cEEEEEeC------CCcEEEEeCCCCcEEEEEecCCce---------------------------------------EEE
Q 002407 579 QHLLSSSM------DKTVRLWHLSSKTCLKIFSHSDYV---------------------------------------TCI 613 (927)
Q Consensus 579 ~~L~Sgs~------DgtV~lWDl~t~~~~~~~~h~~~V---------------------------------------~~v 613 (927)
+.++.++. ++.|+.+|..+++.+..+...... ..+
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 45555554 789999999999998877632211 135
Q ss_pred EEccCCCCEEEEEECC----------------CcEEEEeCCCCcEEEeccCC----------CcEEEEEECCCCC---EE
Q 002407 614 QFNPVDDRYFISGSLD----------------AKVRIWSIPERQVVDWNDLH----------EMVTAACYTPDGQ---GA 664 (927)
Q Consensus 614 ~fsp~dg~~L~sgs~D----------------g~I~IWDl~t~~~v~~~~~~----------~~V~sla~spdg~---~l 664 (927)
++.+ ....++.+..+ +.|..+|..+++.+-..... ....-+....+|+ .+
T Consensus 241 a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v 319 (571)
T 2ad6_A 241 AYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp EEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred EEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence 6667 55566666532 35999999999987533211 1112223334774 57
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccc---c-ccCCCCCe--------------------------EEEEEcCCCCc
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNK---K-KRSHQRKI--------------------------TGFQFAPGSSS 714 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~---~-~~~h~~~V--------------------------tsl~fspdg~~ 714 (927)
++++.+|.++++|..+++.+....+..... . ......++ ..++++|+..
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g- 398 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR- 398 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT-
T ss_pred EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC-
Confidence 788899999999999998876654321000 0 00000000 2456777765
Q ss_pred EEEEEE-------------------------------------CCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCE
Q 002407 715 EVLVTS-------------------------------------ADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRY 757 (927)
Q Consensus 715 ~Llsgs-------------------------------------~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~ 757 (927)
++++.. .++.|..||..+.....+.... ..+....+...+.+
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGL 477 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCE
Confidence 444432 3478889996654444433221 12222223334667
Q ss_pred EEEEECCCcEEEEECCCCCCcc
Q 002407 758 VVSASEDSYVYVWKYEAESRPS 779 (927)
Q Consensus 758 Lasgs~Dg~I~IWdl~s~~~~~ 779 (927)
|+.++.|+.|+.||.++++..-
T Consensus 478 v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 478 VWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEcCCCeEEEEECCCCCEEE
Confidence 7789999999999999987653
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.88 E-value=0.007 Score=67.00 Aligned_cols=197 Identities=8% Similarity=-0.052 Sum_probs=126.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~- 647 (927)
..+|.+..++..|+.+ ....|+..++........+.....+..++|++.++.++++-...+.|..+++..........
T Consensus 35 ~~~C~~~~~~~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 35 RRSCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SSCEEESSSCCEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CCcccccccCceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3455555555555544 34568888888776666555556689999998455555555567889999988765444332
Q ss_pred CCCcEEEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcE
Q 002407 648 LHEMVTAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRI 725 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I 725 (927)
.......+++.+.+..| ++-...+.|.++++......... .........+++.|.+..++++-... +.|
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~---------~~~l~~P~~iavdp~~g~ly~td~~~~~~I 184 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------WQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------CTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE---------eCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence 22456788998755544 55555678999998764322211 12335578999999776555555555 788
Q ss_pred EEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 726 RVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
..++...................++|++++..|..+. ..+.|..+++...
T Consensus 185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 8888543222221122334567899998777666654 5667999998753
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.85 E-value=0.0077 Score=66.66 Aligned_cols=200 Identities=8% Similarity=-0.007 Sum_probs=128.4
Q ss_pred CCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 566 HLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
....+..++|++. +.|+.+ ...+.|+.+++........+. .......+++.+.+++++++-...+.|.+.++.....
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 3445789999975 665544 467889999998776555443 2345678999874566666666678899999876544
Q ss_pred EEec-cCCCcEEEEEECCCCCEEEEEE-CC-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 643 VDWN-DLHEMVTAACYTPDGQGALVGS-YK-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 643 v~~~-~~~~~V~sla~spdg~~l~tgs-~D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
.... ..-.....+++.|.+..|+... .. +.|..+++......... .......+.++++|++..++++-
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---------DTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC---------CSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE---------ECCCCCcceEEEeCCCCEEEEEE
Confidence 3333 2335689999999666555544 34 77888888754322211 12344578999999877666666
Q ss_pred ECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 720 SADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 720 s~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
...+.|..+|... ....+.. ........+++ ..+.++++-...+.|..++..++.
T Consensus 222 ~~~~~I~~~~~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 222 AKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEeCCCCceEEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 6778899998542 2222221 12344567777 345555555567778888754543
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.85 E-value=0.0047 Score=69.40 Aligned_cols=201 Identities=7% Similarity=-0.003 Sum_probs=129.4
Q ss_pred cCCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
.....+..++|.+. +.|+.+ ...+.|+.+++........+. .......|++.+..++++++-...+.|.+.++....
T Consensus 113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~ 192 (386)
T 3v65_B 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH 192 (386)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS
T ss_pred cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc
Confidence 34456889999975 665544 467889999998776555444 234567889987456666666667789998887654
Q ss_pred EEEecc-CCCcEEEEEECCCCCEEEEEEC-C-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 642 VVDWND-LHEMVTAACYTPDGQGALVGSY-K-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 642 ~v~~~~-~~~~V~sla~spdg~~l~tgs~-D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
...... .-.....+++.|.+..|+.... . +.|..+++......... .......+.|+|+|++..++++
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA---------DTHLFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEEGGGTEEEEE
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE---------ECCCCCeeeEEEeCCCCEEEEE
Confidence 333332 3357899999997766655543 3 67888888754332221 1223457899999877766666
Q ss_pred EECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 719 TSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 719 gs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
-...+.|..+|... ....+.. ........+++ ..+.++++-...+.|..++..++.
T Consensus 264 D~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 264 DAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCc
Confidence 67778899998532 2222221 22344567777 345555666667778888855544
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.82 E-value=0.0059 Score=68.58 Aligned_cols=195 Identities=8% Similarity=-0.043 Sum_probs=124.3
Q ss_pred EEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-C
Q 002407 571 LDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-H 649 (927)
Q Consensus 571 ~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-~ 649 (927)
.|.+..+..+|+.+ ....|+.+++..............+..++|++.++.++++-...+.|..+++.......+... .
T Consensus 80 ~C~~~~~~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 80 SCKALGPEPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp CEEECSSCCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred eECCccccceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 34444444555444 346788899988776666665667899999984555555555678899999987765443332 2
Q ss_pred CcEEEEEECCCCCEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEE
Q 002407 650 EMVTAACYTPDGQGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRV 727 (927)
Q Consensus 650 ~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~V 727 (927)
.....+++.+.+..| ++-...+.|.++++......... .........+++.|.+..++++-... +.|..
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~---------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r 229 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL---------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEA 229 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee---------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence 355678888755544 44455678888888754322221 12335678999999777555555555 78888
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
++...................++|++++..|+.+. ..+.|..+++...
T Consensus 230 ~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 230 SSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp EETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred EeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 88543222222222344567899998776666554 5667999988753
No 264
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.81 E-value=0.004 Score=75.36 Aligned_cols=179 Identities=9% Similarity=0.123 Sum_probs=109.7
Q ss_pred EEEecCC-cEEEEEeCCC-------------------cEEEEeCCCCcEEEEEec---C-------CceEEEEEccCCCC
Q 002407 572 DLSWSKS-QHLLSSSMDK-------------------TVRLWHLSSKTCLKIFSH---S-------DYVTCIQFNPVDDR 621 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~Dg-------------------tV~lWDl~t~~~~~~~~h---~-------~~V~~v~fsp~dg~ 621 (927)
.+++.+. +.++.++.++ .|..+|..+++.+..+.. . .++....+.. +++
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEecc-CCc
Confidence 4566665 7777776665 499999999999988862 1 2233233333 554
Q ss_pred ---EEEEEECCCcEEEEeCCCCcEEEeccCCC-------------c------------------------EEEEEECCCC
Q 002407 622 ---YFISGSLDAKVRIWSIPERQVVDWNDLHE-------------M------------------------VTAACYTPDG 661 (927)
Q Consensus 622 ---~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~-------------~------------------------V~sla~spdg 661 (927)
.|+.++.+|.++++|..+++++....... . -..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68899999999999999999873211110 0 0126778877
Q ss_pred CEEEEEE------------------------------------CCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 662 QGALVGS------------------------------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 662 ~~l~tgs------------------------------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
..+++.. .+|.|..||+.+++........ ..+..
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----------~~~~~ 462 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----------THWNG 462 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----------SSCCC
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----------CCCcC
Confidence 7666522 2378999999999987664321 11222
Q ss_pred EEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCc-ceEEEEEecCCC-EEEEEE
Q 002407 706 FQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTN-SQISASLTANGR-YVVSAS 762 (927)
Q Consensus 706 l~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~-~v~sv~fspdg~-~Lasgs 762 (927)
..+...+. ++++++.|+.|++||............... ...-+.+..+|+ |++.++
T Consensus 463 ~~~~t~gg-~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 463 GTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CEEEETTT-EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ceeEeCCC-EEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 22333344 788899999999999654444333322211 112234456776 455444
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.81 E-value=0.014 Score=63.50 Aligned_cols=202 Identities=9% Similarity=-0.020 Sum_probs=127.0
Q ss_pred CCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCC----CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 566 HLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSS----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 566 H~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t----~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
....+..++|++. +.|+.+ ...+.|..+++.. ......+. .-.....|++.+.+++++++-...+.|.++++.
T Consensus 28 ~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC
Confidence 3456789999975 565544 4568999999886 22223332 224568899987355555665667889999987
Q ss_pred CCcEEEecc-CCCcEEEEEECCCCCEEEEEECC--CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 639 ERQVVDWND-LHEMVTAACYTPDGQGALVGSYK--GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 639 t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~D--g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
......... .-.....+++.|.+..|+.+... +.|..+++......... .......+.+++++++..+
T Consensus 108 g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~---------~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 108 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------CSSCSCEEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE---------ECCCCCceEEEEeccCCEE
Confidence 655443332 33578899999976666555543 68888888654322111 1233567899999987756
Q ss_pred EEEEECCCcEEEEECCc-ceEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 716 VLVTSADSRIRVVDGID-LVHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~-~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
+++-...+.|..+|... ....+... ........+++. .+.++++-...+.|..++..++..
T Consensus 179 Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 66666778999999532 22333221 122345677775 355556666677888888766543
No 266
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.77 E-value=0.025 Score=61.77 Aligned_cols=192 Identities=7% Similarity=0.015 Sum_probs=106.2
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEE-EeC--CCCcE
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRI-WSI--PERQV 642 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~I-WDl--~t~~~ 642 (927)
+.+..|.+.+++.++.++.++.|.. ....++.-... .....+..+.+.| ++.+++.+ .+|.+.. +|- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCCCCceeE
Confidence 3456677766666656666665432 22233322222 2456789999998 77777655 4455443 342 22223
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
+. ......+..+.+.+++..+ +.+.+|.+++.+...++........ .......+..+.+.+++. +++++.+
T Consensus 199 ~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~-----~~~~~~~~~~v~~~~~~~--~~~~g~~ 269 (327)
T 2xbg_A 199 HN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSP-----LRRNSVGFLDLAYRTPNE--VWLAGGA 269 (327)
T ss_dssp EE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCT-----TSSCCSCEEEEEESSSSC--EEEEEST
T ss_pred CC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCC-----cccCCcceEEEEecCCCE--EEEEeCC
Confidence 32 2345678899999998755 4556788877653334433222110 001234588999988654 5555667
Q ss_pred CcEEEE-ECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEEC
Q 002407 723 SRIRVV-DGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKY 772 (927)
Q Consensus 723 g~I~Vw-D~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl 772 (927)
+.|.+- |....-..+... .....+..+.|.+++. +++++.+|.|+-++-
T Consensus 270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 777443 322221222211 1124566788876554 666678897776653
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.73 E-value=0.026 Score=63.61 Aligned_cols=211 Identities=9% Similarity=-0.016 Sum_probs=132.8
Q ss_pred CceEEEccCCCCEEEEEecCC-cEEEEE-eCCCcEEEEeCCCC----cEEEEEe-cCCceEEEEEccCCCCEEEEEECCC
Q 002407 558 KPICSFQGHLDDVLDLSWSKS-QHLLSS-SMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDA 630 (927)
Q Consensus 558 k~i~~l~gH~~~V~~l~~spd-~~L~Sg-s~DgtV~lWDl~t~----~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg 630 (927)
.....+......+..|+|++. +.|+.+ ...+.|+.+++... .....+. .......|++.+..++++++-...+
T Consensus 102 ~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 102 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred cceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCC
Confidence 333334445667889999985 665555 45688999998752 2333333 4456788999875566666666678
Q ss_pred cEEEEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 631 KVRIWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
.|.+.++.......... .-.....|++.|.+.+|+.... .+.|...++......... .......+.|+
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~---------~~~l~~P~gla 252 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGIT 252 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE---------CSSCSCEEEEE
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE---------ECCCCceEEEE
Confidence 89999988765544433 3356899999997666666543 367988888754332221 12335678999
Q ss_pred EcCCCCcEEEEEECCCcEEEEECCc-ceEEE-EeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCc
Q 002407 708 FAPGSSSEVLVTSADSRIRVVDGID-LVHKF-KGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg~I~VwD~~~-~~~~~-~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
+++++..++++-...+.|..+|... ....+ ...........+++. .+.++++-...+.|..++..++...
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 9988775666666778899998532 22222 221223345566663 3445556666778888886665443
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.72 E-value=0.0028 Score=75.54 Aligned_cols=102 Identities=6% Similarity=-0.008 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCce---------------------------------------EEEEEccCCCCEEEEE
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYV---------------------------------------TCIQFNPVDDRYFISG 626 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V---------------------------------------~~v~fsp~dg~~L~sg 626 (927)
.++.|+.+|..+++.+..+...... ..+++.+ ...+|+.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 3789999999999998877632221 1345666 66677777
Q ss_pred ECC----------------CcEEEEeCCCCcEEEeccCC--C--------cEEEEEEC-CCC---CEEEEEECCCeEEEE
Q 002407 627 SLD----------------AKVRIWSIPERQVVDWNDLH--E--------MVTAACYT-PDG---QGALVGSYKGSCHLY 676 (927)
Q Consensus 627 s~D----------------g~I~IWDl~t~~~v~~~~~~--~--------~V~sla~s-pdg---~~l~tgs~Dg~I~Iw 676 (927)
..+ +.|..+|..+++++-.+... + ...-+... .+| +.++.++.+|.++++
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEE
Confidence 655 37999999999987433221 1 11122232 567 467778899999999
Q ss_pred ECCCCeeeeecc
Q 002407 677 NTSENKLQQKSP 688 (927)
Q Consensus 677 Dl~~~~~~~~~~ 688 (927)
|..+++.+....
T Consensus 339 D~~tG~~lw~~~ 350 (599)
T 1w6s_A 339 DRTDGALVSANK 350 (599)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEeeccc
Confidence 999999876554
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.68 E-value=0.0017 Score=79.78 Aligned_cols=145 Identities=8% Similarity=0.072 Sum_probs=81.1
Q ss_pred EEEecCC-cEEEEEeCC-----CcEEEEeCCCCcE--EEEEe--cCCceEEEEEccCCCCEEEEEEC---CCcEEEEeCC
Q 002407 572 DLSWSKS-QHLLSSSMD-----KTVRLWHLSSKTC--LKIFS--HSDYVTCIQFNPVDDRYFISGSL---DAKVRIWSIP 638 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~D-----gtV~lWDl~t~~~--~~~~~--h~~~V~~v~fsp~dg~~L~sgs~---Dg~I~IWDl~ 638 (927)
.+.|+|| ..|+....| ..|+++++.+++. ..++. .......+.|+| ++++|+..+. ...|.++|+.
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECC
Confidence 3567777 355554443 3588888887642 33333 334567889999 9998876653 3358888988
Q ss_pred CC--cE--EEeccC-CCcEEEEEECCCCCEEEEEECC-----CeEEEEECCCC-eeee-ecccccccccccCCCC--CeE
Q 002407 639 ER--QV--VDWNDL-HEMVTAACYTPDGQGALVGSYK-----GSCHLYNTSEN-KLQQ-KSPINLQNKKKRSHQR--KIT 704 (927)
Q Consensus 639 t~--~~--v~~~~~-~~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~-~~~~-~~~i~~~~~~~~~h~~--~Vt 704 (927)
++ +. ...... ......+.|+. |..|+..+.. ..|..+++.+. .... .+ .+.. .+.
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li----------~~~~~~~l~ 372 (751)
T 2xe4_A 304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV----------DHSEDVFME 372 (751)
T ss_dssp SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE----------CCCSSEEEE
T ss_pred CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE----------CCCCCcEEE
Confidence 75 33 333332 23445555443 5555544433 25777777642 2111 11 2222 345
Q ss_pred EEEEcCCCCcEEEEEECCCcE--EEEEC
Q 002407 705 GFQFAPGSSSEVLVTSADSRI--RVVDG 730 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I--~VwD~ 730 (927)
.+.+. +..++++...++.. .+++.
T Consensus 373 ~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 373 SIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 55554 45566777777764 44553
No 270
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.68 E-value=0.012 Score=67.15 Aligned_cols=204 Identities=11% Similarity=0.064 Sum_probs=112.0
Q ss_pred CEEEEEecCCcEEEEEeCCC-----cEEEEeCCCCcE-EEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE
Q 002407 569 DVLDLSWSKSQHLLSSSMDK-----TVRLWHLSSKTC-LKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV 642 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~Dg-----tV~lWDl~t~~~-~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~ 642 (927)
....|+|++++.|+.+...+ .+...+...+.. ...+..-.....++++|.++.++++-..++.|+.++..++..
T Consensus 183 ~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~ 262 (433)
T 4hw6_A 183 QCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL 262 (433)
T ss_dssp CEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE
T ss_pred CccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE
Confidence 35667777764354444321 122222221111 112223344567888885566555555677899999887766
Q ss_pred -EEec--cCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECC--CCeeeeecccccc--------cccccCCCCCeEEEEE
Q 002407 643 -VDWN--DLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTS--ENKLQQKSPINLQ--------NKKKRSHQRKITGFQF 708 (927)
Q Consensus 643 -v~~~--~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~--~~~~~~~~~i~~~--------~~~~~~h~~~Vtsl~f 708 (927)
.... ........++|+|++++|+++. ..+.|+.+++. ++.+.....+.-. .............+++
T Consensus 263 ~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav 342 (433)
T 4hw6_A 263 TEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF 342 (433)
T ss_dssp EEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred EEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence 2222 1223345799999999655554 56789998865 2322100000000 0000112345678898
Q ss_pred ---------cCCCCcEEEEEECCCcEEEEECCcceEEEEeecC----------------CcceEEEEEe-cCCCEEEEEE
Q 002407 709 ---------APGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN----------------TNSQISASLT-ANGRYVVSAS 762 (927)
Q Consensus 709 ---------spdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~----------------~~~v~sv~fs-pdg~~Lasgs 762 (927)
.+++. ++++-...+.|+.++....+..+.+... ......++++ ++|.++++=.
T Consensus 343 ~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~ 421 (433)
T 4hw6_A 343 VKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC 421 (433)
T ss_dssp EECGGGTTSSCCEE-EEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred EccccccccCCCCc-EEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence 55543 5555567788999985444444433211 1235688999 6676666666
Q ss_pred CCCcEEEEECC
Q 002407 763 EDSYVYVWKYE 773 (927)
Q Consensus 763 ~Dg~I~IWdl~ 773 (927)
..+.|+.++++
T Consensus 422 ~n~rIr~i~~e 432 (433)
T 4hw6_A 422 DNHRVRKIAPE 432 (433)
T ss_dssp GGTEEEEEEEC
T ss_pred CCCEEEEEecC
Confidence 67778887764
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.65 E-value=0.0016 Score=78.70 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=109.8
Q ss_pred EEEecCC-cEEEEEeC-CCcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEE-CC-----CcEEEEeCCCCc
Q 002407 572 DLSWSKS-QHLLSSSM-DKTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGS-LD-----AKVRIWSIPERQ 641 (927)
Q Consensus 572 ~l~~spd-~~L~Sgs~-DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs-~D-----g~I~IWDl~t~~ 641 (927)
.+++..+ ..++.|+. +..+.+||..+.+....-. ....-.++++.+ ++++++.|+ .+ ..+.+||..+.+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 3455555 45566663 4579999998876554322 222223456666 888999888 44 469999998876
Q ss_pred EEEecc-----CCCcEEEEEECCCCCEEEEEECCC---------eEEEEECCCCeeeeecccccccccccCCCCCeEEEE
Q 002407 642 VVDWND-----LHEMVTAACYTPDGQGALVGSYKG---------SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ 707 (927)
Q Consensus 642 ~v~~~~-----~~~~V~sla~spdg~~l~tgs~Dg---------~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~ 707 (927)
-..... ....-....+..++..++.|+.+| .+..||..+......................-.++.
T Consensus 326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 544311 110000112234566666665544 467888887654332110000000000111234455
Q ss_pred EcCCCCcEEEEEECCC-----------cEEEEECCcceEEEEe--e-cCCcceEEEEEecCCCEEEEEECC---------
Q 002407 708 FAPGSSSEVLVTSADS-----------RIRVVDGIDLVHKFKG--F-RNTNSQISASLTANGRYVVSASED--------- 764 (927)
Q Consensus 708 fspdg~~~Llsgs~Dg-----------~I~VwD~~~~~~~~~~--~-~~~~~v~sv~fspdg~~Lasgs~D--------- 764 (927)
|...+..++++|+.++ .|.+||.....-.... . .....-.++++.+++++++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 5443444777777532 5778885443222211 1 111222355677899999999864
Q ss_pred --CcEEEEECCCC
Q 002407 765 --SYVYVWKYEAE 775 (927)
Q Consensus 765 --g~I~IWdl~s~ 775 (927)
..+.+||..+.
T Consensus 486 ~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 486 PVFTPEIYVPEQD 498 (656)
T ss_dssp BCCCCEEEEGGGT
T ss_pred cccceEEEcCCCC
Confidence 45899998764
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.63 E-value=0.012 Score=63.96 Aligned_cols=178 Identities=9% Similarity=-0.036 Sum_probs=114.1
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC----CcEEEecc-CCCcEEEEEECCCC
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE----RQVVDWND-LHEMVTAACYTPDG 661 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t----~~~v~~~~-~~~~V~sla~spdg 661 (927)
...|+..|+.+.+....+..-..+..++|++.++.++++-...+.|..+++.. ........ .-..+..+++.+.+
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 45689999998877776666667889999983444555555568899999876 22222222 22456788998755
Q ss_pred CEE-EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCc-ceEEEE
Q 002407 662 QGA-LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGID-LVHKFK 738 (927)
Q Consensus 662 ~~l-~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~-~~~~~~ 738 (927)
..| ++-...+.|.++++......... .........+++.|.+..++++.... +.|..++... ....+.
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~---------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEE---------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 544 44456788999998754332221 12234678999999766455554443 7888888533 222222
Q ss_pred eecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEA 774 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s 774 (927)
.........+++++++..|+.+. ..+.|..+++..
T Consensus 160 -~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 160 -TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 12344567899998877776655 566899999875
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.63 E-value=0.021 Score=67.71 Aligned_cols=164 Identities=10% Similarity=0.044 Sum_probs=97.6
Q ss_pred CcEEEEeCCCCcEEEEEe---cCC-------ceEEEEEccCCC---CEEEEEECCCcEEEEeCCCCcEEEeccCCC---c
Q 002407 588 KTVRLWHLSSKTCLKIFS---HSD-------YVTCIQFNPVDD---RYFISGSLDAKVRIWSIPERQVVDWNDLHE---M 651 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~---h~~-------~V~~v~fsp~dg---~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~---~ 651 (927)
+.|..+|..+++.+..+. |.. ...-+.....++ ..|+.++.+|.|+++|..+++++....... .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 589999999999998886 211 111122210155 478889999999999999998874322211 0
Q ss_pred -------------------------------------------EEEEEECCCCCEEEEEE--------------------
Q 002407 652 -------------------------------------------VTAACYTPDGQGALVGS-------------------- 668 (927)
Q Consensus 652 -------------------------------------------V~sla~spdg~~l~tgs-------------------- 668 (927)
...++++|+...+++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 01346677655555533
Q ss_pred -------------CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE
Q 002407 669 -------------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH 735 (927)
Q Consensus 669 -------------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~ 735 (927)
.+|.|..||+.+++.+....... ...... +. ..+. ++++++.|+.|+.||..+...
T Consensus 451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-----~~~~g~---~~--tagg-lvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-----PLWAGV---LA--TAGN-LVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-----CCCSCC---EE--ETTT-EEEEECTTSEEEEEETTTCCE
T ss_pred eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-----CCcccc---eE--eCCC-EEEEECCCCcEEEEECCCCCE
Confidence 25789999999998776543211 011111 11 1233 788899999999999765444
Q ss_pred EEEeecCCcc-eEEEEEecCCC-EEEEEE
Q 002407 736 KFKGFRNTNS-QISASLTANGR-YVVSAS 762 (927)
Q Consensus 736 ~~~~~~~~~~-v~sv~fspdg~-~Lasgs 762 (927)
..+....... ..-+.+..+|+ |+++.+
T Consensus 520 lW~~~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EEEecCCCCcccCceEEEECCEEEEEEEc
Confidence 4443322211 12255667776 444443
No 274
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=0.013 Score=66.92 Aligned_cols=203 Identities=10% Similarity=0.112 Sum_probs=109.9
Q ss_pred CEEEEEecCC-cEEEEEeCC-C----cEEEEeCCCCcEE--EEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 DVLDLSWSKS-QHLLSSSMD-K----TVRLWHLSSKTCL--KIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~D-g----tV~lWDl~t~~~~--~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
....|+|+++ ++|+.+... + .+.+++.. +... ..+........++++|.++.++++-...+.|..++..++
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 4566777777 435554431 1 23333322 2111 223323446778899855666666556788999999877
Q ss_pred cEEEecc--CCCcEEEEEECCCCCEEEEE-ECCCeEEEEECCC--Ceeeeecccccc--cc------cccCCCCCeE-EE
Q 002407 641 QVVDWND--LHEMVTAACYTPDGQGALVG-SYKGSCHLYNTSE--NKLQQKSPINLQ--NK------KKRSHQRKIT-GF 706 (927)
Q Consensus 641 ~~v~~~~--~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~~--~~~~~~~~i~~~--~~------~~~~h~~~Vt-sl 706 (927)
....... .......++|+|+|++|++. ...+.|..++... +.+.....+.-. .. .......... .+
T Consensus 259 ~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv 338 (430)
T 3tc9_A 259 ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGT 338 (430)
T ss_dssp EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEE
T ss_pred cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceE
Confidence 6533322 23467899999999955555 4567899987653 222111000000 00 0001112233 45
Q ss_pred EEcC--------CCCcEEEEEECCCcEEEEECCcceEEEEeec--------C--------CcceEEEEEecC-CCEEEEE
Q 002407 707 QFAP--------GSSSEVLVTSADSRIRVVDGIDLVHKFKGFR--------N--------TNSQISASLTAN-GRYVVSA 761 (927)
Q Consensus 707 ~fsp--------dg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~--------~--------~~~v~sv~fspd-g~~Lasg 761 (927)
+..+ ++ .++++-...+.|+.++....+..+.+.. . -.....++++++ +.++++-
T Consensus 339 ~v~~~~y~~~D~~g-~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD 417 (430)
T 3tc9_A 339 FVKNPAYKGSSDEY-DFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD 417 (430)
T ss_dssp EEECGGGTTSSCCE-EEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred EEccccccccCCCC-eEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence 5532 23 2444445678899998543333333320 0 124678999995 5555555
Q ss_pred ECCCcEEEEECC
Q 002407 762 SEDSYVYVWKYE 773 (927)
Q Consensus 762 s~Dg~I~IWdl~ 773 (927)
.....|+.++++
T Consensus 418 ~~n~rIr~i~~e 429 (430)
T 3tc9_A 418 RENRRIRKIGYE 429 (430)
T ss_dssp GGGTEEEEEEEC
T ss_pred CCCCeEEEEccC
Confidence 566778887764
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.54 E-value=0.011 Score=71.08 Aligned_cols=257 Identities=9% Similarity=0.065 Sum_probs=135.5
Q ss_pred EEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEecCcCcccceeecccccCccccEEEEc
Q 002407 432 RVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGE-DCVIHVWQVVESERKGELLEKQEDGHLNMLLLAN 510 (927)
Q Consensus 432 ~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~-DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~ 510 (927)
.+.+|+..+++...+.... ..+.....++++.++|++++.||. +..+.+||..+.+..... . .........+.
T Consensus 220 ~~~~yd~~t~~w~~~~~~~--~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~---~~~~R~~~s~~ 293 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTV--TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-D---MQVARGYQSSA 293 (656)
T ss_dssp EEEEECTTTCCBCCCEEEE--CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-C---CSSCCSSCEEE
T ss_pred EEEEEeCCCCcEEeCcccC--CCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-C---CCccccccceE
Confidence 6899999888776553211 223333445788899999999984 568999998876432211 0 01111112334
Q ss_pred cCCCCCeeccccc-CCceeeecccccccccccccCcccccceEeecCCCceEEE-----------c-----cCCCCEEEE
Q 002407 511 GSPEPTSLSPKHL-DNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSF-----------Q-----GHLDDVLDL 573 (927)
Q Consensus 511 ~spd~~~la~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l-----------~-----gH~~~V~~l 573 (927)
..+++.+++.++. ++.... ... .+|+.....-..+ . .+.+.+..+
T Consensus 294 ~~~dg~iyv~GG~~~~~~~~----~~~--------------e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 355 (656)
T 1k3i_A 294 TMSDGRVFTIGGSWSGGVFE----KNG--------------EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 355 (656)
T ss_dssp ECTTSCEEEECCCCCSSSCC----CCE--------------EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred EecCCeEEEEeCcccCCccc----ccc--------------eEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence 4457777777652 211000 000 0111111100000 0 011111111
Q ss_pred EecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe-cC---------CceEEEEEccCCCCEEEEEECCC-----------cE
Q 002407 574 SWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS-HS---------DYVTCIQFNPVDDRYFISGSLDA-----------KV 632 (927)
Q Consensus 574 ~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~---------~~V~~v~fsp~dg~~L~sgs~Dg-----------~I 632 (927)
... ++.++.......+..||..+........ +. ..-.++.|...++++++.|+.++ .|
T Consensus 356 Gg~-~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v 434 (656)
T 1k3i_A 356 GWK-KGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHII 434 (656)
T ss_dssp ECG-GGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEE
T ss_pred ECC-CCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEE
Confidence 111 1222222234567889998877554433 11 12345555444788888887542 67
Q ss_pred EEEeCCCCcEEEec--cCC--CcEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCeeeeeccccccccccc
Q 002407 633 RIWSIPERQVVDWN--DLH--EMVTAACYTPDGQGALVGSYK-----------GSCHLYNTSENKLQQKSPINLQNKKKR 697 (927)
Q Consensus 633 ~IWDl~t~~~v~~~--~~~--~~V~sla~spdg~~l~tgs~D-----------g~I~IwDl~~~~~~~~~~i~~~~~~~~ 697 (927)
.+||..+.+-.... ..+ ..-.+++..|+++.+++|+.+ ..+.+||..+.+....... .
T Consensus 435 ~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~-------~ 507 (656)
T 1k3i_A 435 TLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-------S 507 (656)
T ss_dssp ECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-------S
T ss_pred EcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC-------C
Confidence 88888877655443 222 223455677899999999864 4689999988765432211 1
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 698 SHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 698 ~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.......+..+.|++. ++++|+.
T Consensus 508 ~~R~~hs~a~ll~dg~-v~v~GG~ 530 (656)
T 1k3i_A 508 IVRVYHSISLLLPDGR-VFNGGGG 530 (656)
T ss_dssp SCCCTTEEEEECTTSC-EEEEECC
T ss_pred CccccccHhhcCCCcE-EEecCCC
Confidence 1112223445668776 7777764
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.53 E-value=0.048 Score=61.46 Aligned_cols=187 Identities=9% Similarity=-0.058 Sum_probs=119.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEecc-CCCcEE
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWND-LHEMVT 653 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~~-~~~~V~ 653 (927)
.+|+.+. ...|+..++........+.....+..|+|++.++.++++-...+.|+.+++... ....... .-..+.
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 4444443 468899999887776666667788999999844544555455678999988752 2222222 345678
Q ss_pred EEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC-CCcEEEEECC
Q 002407 654 AACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA-DSRIRVVDGI 731 (927)
Q Consensus 654 sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~-Dg~I~VwD~~ 731 (927)
.+++.+. +.++++-...+.|.+.++......... .........|++.|.+..++++-.. .+.|...+..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~---------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEE---------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEE---------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 8999984 444555556788999998765433322 1233457899999976644444423 4788888854
Q ss_pred cceEEEEeecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 732 DLVHKFKGFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 732 ~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
.................+++++++..|+.+. ..+.|..++++..
T Consensus 234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 3222222222335678899998877777665 4567999998754
No 277
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.48 E-value=0.0076 Score=71.47 Aligned_cols=152 Identities=6% Similarity=-0.067 Sum_probs=93.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecCC-----ceEE-EEEccCCCCEEEEEEC------CCcEEEEeCCCCcEEEe
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHSD-----YVTC-IQFNPVDDRYFISGSL------DAKVRIWSIPERQVVDW 645 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~-----~V~~-v~fsp~dg~~L~sgs~------Dg~I~IWDl~t~~~v~~ 645 (927)
++.|+.++.|+.|..+|..+++.+..+.... .+.+ .... ++ .+++++. ++.|..+|..+++++-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 4678888899999999999999988776322 2221 1111 34 4555554 78999999999988753
Q ss_pred ccCCCcE---------------------------------------EEEEECCCCCEEEEEECC----------------
Q 002407 646 NDLHEMV---------------------------------------TAACYTPDGQGALVGSYK---------------- 670 (927)
Q Consensus 646 ~~~~~~V---------------------------------------~sla~spdg~~l~tgs~D---------------- 670 (927)
....... ..+++.++...++++..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 3222110 235677766677776642
Q ss_pred CeEEEEECCCCeeeeecccccccc-cccCCCCCeEEEEEcCCCC--cEEEEEECCCcEEEEECCcc
Q 002407 671 GSCHLYNTSENKLQQKSPINLQNK-KKRSHQRKITGFQFAPGSS--SEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 671 g~I~IwDl~~~~~~~~~~i~~~~~-~~~~h~~~Vtsl~fspdg~--~~Llsgs~Dg~I~VwD~~~~ 733 (927)
+.|..+|..+++.+..++...... .......++. +....++. .+++.++.+|.++++|..+.
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 336 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG 336 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC
Confidence 359999999999877655321000 0001112222 22223453 35677888999999995443
No 278
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.46 E-value=0.06 Score=56.75 Aligned_cols=208 Identities=10% Similarity=0.113 Sum_probs=122.4
Q ss_pred eeEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEecCcCcccceeecccccCccccEEEEccCCCCCeecccccCCce
Q 002407 449 CQEIQAHNGSIWSIKFSLDGRYLAS-AGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHL 527 (927)
Q Consensus 449 ~q~L~gH~~~I~~vafSpdG~~LaS-gs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i 527 (927)
.+.|.+=.+.+..|+|+|++..|++ ...++.|...|.. ++....+.
T Consensus 19 ~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-------------------------------- 65 (255)
T 3qqz_A 19 GKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-------------------------------- 65 (255)
T ss_dssp EEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE--------------------------------
T ss_pred ceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe--------------------------------
Confidence 3566777778999999998765554 6667777777765 33222210
Q ss_pred eeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCCcEEEEE-eCCCcEEEEeCCCCcE---EEE
Q 002407 528 EKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSS-SMDKTVRLWHLSSKTC---LKI 603 (927)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sg-s~DgtV~lWDl~t~~~---~~~ 603 (927)
+.+ ....-.|++.+++.++.+ -.++.+.++++..... +..
T Consensus 66 -----------------------------------l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~ 109 (255)
T 3qqz_A 66 -----------------------------------LDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKK 109 (255)
T ss_dssp -----------------------------------CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred -----------------------------------cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeee
Confidence 011 134566777777555444 3566788887765432 222
Q ss_pred Ee-------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC---C---cEEEe-----ccCCCcEEEEEECCCCC-EE
Q 002407 604 FS-------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE---R---QVVDW-----NDLHEMVTAACYTPDGQ-GA 664 (927)
Q Consensus 604 ~~-------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t---~---~~v~~-----~~~~~~V~sla~spdg~-~l 664 (927)
.. .......|+|+| .++.|+++.......||.+.. . .+... ...-..+..++++|... ++
T Consensus 110 ~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~ll 188 (255)
T 3qqz_A 110 IKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLL 188 (255)
T ss_dssp EECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEE
T ss_pred eccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEE
Confidence 21 234468999999 666666666555555555431 1 11111 01123578999999554 55
Q ss_pred EEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 665 LVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 665 ~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
+.......|.++|... +.+..+.+..............-+|+|.++|. |.+.++-..+++|.
T Consensus 189 iLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~--lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 189 VLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN--IYIVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC--EEEEETTTEEEEEE
T ss_pred EEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC--EEEEcCCceEEEEE
Confidence 5555667789999764 45555443211111112234678999999985 55557777777765
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.0071 Score=69.02 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=101.1
Q ss_pred CEEEEEecC-C-cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC-C----cEEEEeCCCCc
Q 002407 569 DVLDLSWSK-S-QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-A----KVRIWSIPERQ 641 (927)
Q Consensus 569 ~V~~l~~sp-d-~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-g----~I~IWDl~t~~ 641 (927)
....|+++| + +.|+.+...+.|+.+|+..+..............|+|++ ++++|+.+... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 456789997 3 777777666889999998877666655666789999999 88866655542 2 2333443 222
Q ss_pred EE--EeccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEE
Q 002407 642 VV--DWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLV 718 (927)
Q Consensus 642 ~v--~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Lls 718 (927)
.. ..+........++++| +|.++++-...+.|..|+..++....... .........++|+|++..++++
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~--------~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFT--------IQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEE--------CSSSSCCEEEEECTTSSEEEEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEE--------cCCCCcceeEEEcCCCCEEEEE
Confidence 11 1111223456788999 67666666677899999998776532211 1222457789999999855666
Q ss_pred EECCCcEEEEE
Q 002407 719 TSADSRIRVVD 729 (927)
Q Consensus 719 gs~Dg~I~VwD 729 (927)
-...+.|.+++
T Consensus 288 d~~~~~I~~~~ 298 (430)
T 3tc9_A 288 VVNQHYILRSD 298 (430)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEe
Confidence 66788999987
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.39 E-value=0.021 Score=67.93 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=93.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEecCC-----ceEE-EEEccCCCCEEEEEE------CCCcEEEEeCCCCcEEEecc
Q 002407 580 HLLSSSMDKTVRLWHLSSKTCLKIFSHSD-----YVTC-IQFNPVDDRYFISGS------LDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~-----~V~~-v~fsp~dg~~L~sgs------~Dg~I~IWDl~t~~~v~~~~ 647 (927)
+|+.++.|+.|.-+|..+++.+..+.... .+++ ..+. ++ .+++++ .++.|+.+|..+++++-...
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 38888899999999999999987765222 2221 1121 34 455554 47999999999999874332
Q ss_pred CCCcE---------------------------------------EEEEECCCCCEEEEEECC----------------Ce
Q 002407 648 LHEMV---------------------------------------TAACYTPDGQGALVGSYK----------------GS 672 (927)
Q Consensus 648 ~~~~V---------------------------------------~sla~spdg~~l~tgs~D----------------g~ 672 (927)
..... ..+++.++...+++++.+ +.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence 22111 135666777788887765 37
Q ss_pred EEEEECCCCeeeeecccccccc-cccCCCCCeEEEEEc-CCCC--cEEEEEECCCcEEEEECCcc
Q 002407 673 CHLYNTSENKLQQKSPINLQNK-KKRSHQRKITGFQFA-PGSS--SEVLVTSADSRIRVVDGIDL 733 (927)
Q Consensus 673 I~IwDl~~~~~~~~~~i~~~~~-~~~~h~~~Vtsl~fs-pdg~--~~Llsgs~Dg~I~VwD~~~~ 733 (927)
|..+|..+++....++...... .......++. +... .++. ..++.++.+|.++++|..+.
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC
Confidence 9999999999887765321000 0000112222 2222 3453 35777889999999995443
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.37 E-value=0.0057 Score=75.00 Aligned_cols=192 Identities=14% Similarity=0.097 Sum_probs=109.4
Q ss_pred CEEEEEec-CCc-EEEEE-eCCC----cEEEEeCCCC-cEEEEEecCCceEEEEEccCCCCEEEEEECC-----CcEEEE
Q 002407 569 DVLDLSWS-KSQ-HLLSS-SMDK----TVRLWHLSSK-TCLKIFSHSDYVTCIQFNPVDDRYFISGSLD-----AKVRIW 635 (927)
Q Consensus 569 ~V~~l~~s-pd~-~L~Sg-s~Dg----tV~lWDl~t~-~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IW 635 (927)
.+....|+ ||+ +|+.+ ..+| +|+++|+.++ +.+.. ........+.|+| +++.|+....+ ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGP-DHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECS-STTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEec-CCCEEEEEEECCCCCCCEEEEE
Confidence 57789999 994 45533 3333 5999999998 63211 0111235688999 88877776665 258888
Q ss_pred eCCCCc----EEEeccCCCcEEEEEECCCCCEEEEEEC---CCeEEEEECCCCee-e--eecccccccccccCCCCCeEE
Q 002407 636 SIPERQ----VVDWNDLHEMVTAACYTPDGQGALVGSY---KGSCHLYNTSENKL-Q--QKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 636 Dl~t~~----~v~~~~~~~~V~sla~spdg~~l~tgs~---Dg~I~IwDl~~~~~-~--~~~~i~~~~~~~~~h~~~Vts 705 (927)
++.+++ ++...........+.|+|||++|+.... ...|+++|+.++.. . ..+. .........
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--------~~~~~~~~s 324 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR--------PREKGVRYD 324 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS--------CCCTTCCEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee--------cCCCCceEE
Confidence 887753 2222223345678899999999887663 34588899877521 1 1110 122344555
Q ss_pred EEEcCCCCcEEEEEECC----CcEEEEECCc--ceEE-EEeecCCcceEEEEEecCCCEEEEEECCCc--EEEEEC
Q 002407 706 FQFAPGSSSEVLVTSAD----SRIRVVDGID--LVHK-FKGFRNTNSQISASLTANGRYVVSASEDSY--VYVWKY 772 (927)
Q Consensus 706 l~fspdg~~~Llsgs~D----g~I~VwD~~~--~~~~-~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~--I~IWdl 772 (927)
+.|+. +..+++.+..+ ..|.++|... .... +..+.....+..+.+. .+.++++...++. |+++++
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55544 45455555443 3566677542 1122 2222222234455554 3345566667776 455554
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.36 E-value=0.0093 Score=68.14 Aligned_cols=196 Identities=8% Similarity=0.026 Sum_probs=121.1
Q ss_pred CEEEEEecCC---cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC---Cc-EEEEeCCCCc
Q 002407 569 DVLDLSWSKS---QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD---AK-VRIWSIPERQ 641 (927)
Q Consensus 569 ~V~~l~~spd---~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---g~-I~IWDl~t~~ 641 (927)
....|+|.++ +.|+.+...+.|+.+|+.+++.............|+|++ +++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3567899983 777777666899999998887776665566789999999 88854444321 11 3333322211
Q ss_pred E-EEeccCCCcEEEEEECC-CCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 V-VDWNDLHEMVTAACYTP-DGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~-v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
. ......-.....++++| +|.++++-..++.|+.+|..++.....+.. .........++|+|++..++++-
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~-------~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVM-------MDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEE-------CSCCSSCEEEEECTTSSEEEEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEec-------cCCCCCcccEEEeCCCCEEEEEe
Confidence 1 01111223456688999 666666655678899999987765222110 11122335799999987566666
Q ss_pred ECCCcEEEEECC----cc--eEEEEee-c------------CCcceEEEEE---------ecCCCEEEEEECCCcEEEEE
Q 002407 720 SADSRIRVVDGI----DL--VHKFKGF-R------------NTNSQISASL---------TANGRYVVSASEDSYVYVWK 771 (927)
Q Consensus 720 s~Dg~I~VwD~~----~~--~~~~~~~-~------------~~~~v~sv~f---------spdg~~Lasgs~Dg~I~IWd 771 (927)
...+.|+.++.. .+ ...+.+. . .......+++ .++|.++++-...+.|+.++
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 677899998732 11 1222221 0 1123456888 67777777666677888887
Q ss_pred C
Q 002407 772 Y 772 (927)
Q Consensus 772 l 772 (927)
.
T Consensus 372 ~ 372 (433)
T 4hw6_A 372 P 372 (433)
T ss_dssp T
T ss_pred C
Confidence 4
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.35 E-value=0.0063 Score=72.34 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=54.1
Q ss_pred CCcEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEE
Q 002407 629 DAKVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 629 Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
+|.|..||+.+++.+-.......+..-.+...+..+++++.|+.++.||.++++.+..+.+. ......-+.|
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~--------~g~~a~P~~y 536 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG--------SGIVSPPITW 536 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--------SCCCSCCEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC--------CCcccCceEE
Confidence 57899999999988754433322222122224667888999999999999999998876531 1111122455
Q ss_pred cCCCCcEEEEEEC
Q 002407 709 APGSSSEVLVTSA 721 (927)
Q Consensus 709 spdg~~~Llsgs~ 721 (927)
..+|..++++.+.
T Consensus 537 ~~~G~qYv~~~~G 549 (582)
T 1flg_A 537 EQDGEQYLGVTVG 549 (582)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEcc
Confidence 5667655555443
No 284
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.34 E-value=0.058 Score=58.73 Aligned_cols=199 Identities=5% Similarity=-0.054 Sum_probs=127.2
Q ss_pred CCEEEEEecCC-cEEE-EEeCCCcEEEEeCCCCcEE-EEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEE
Q 002407 568 DDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSKTCL-KIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVV 643 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~-Sgs~DgtV~lWDl~t~~~~-~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v 643 (927)
..+..|+|.+. +.|+ +-...+.|..+++...... ..+. .-.....+++.+..++++++-...+.|.++++......
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 114 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 114 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence 35678999875 5554 4456788999998876421 2222 23456789998745666666666788999998765433
Q ss_pred Eec-cCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 644 DWN-DLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 644 ~~~-~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
... ..-.....+++.|.+..|+.... .+.|..+++......... .......+.+++++++..++++-+
T Consensus 115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~---------~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII---------NSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE---------ECCCCCccEEEEeccCCEEEEEEC
Confidence 332 34457899999997666666653 578888888653322111 122345789999998776666667
Q ss_pred CCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 721 ADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 721 ~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
..+.|..+|... ....+.. ........+++.. +.++++-...+.|..++..++..
T Consensus 186 ~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 186 KLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp TTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEcCCCCceEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 788999998532 2222221 1234456677753 34555555677899998876654
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.32 E-value=0.057 Score=58.83 Aligned_cols=179 Identities=7% Similarity=-0.067 Sum_probs=111.1
Q ss_pred CCcEEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE--EEeccCCCcEEEEEECCCCC
Q 002407 587 DKTVRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV--VDWNDLHEMVTAACYTPDGQ 662 (927)
Q Consensus 587 DgtV~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~--v~~~~~~~~V~sla~spdg~ 662 (927)
...|+.+++.... ....+.....+..|+|.+.++.++++-...+.|..+++..... ......-..+..+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678899988763 2333333345778999984555555655677899999876532 11112223566788887544
Q ss_pred -EEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE-CCCcEEEEECCc-ceEEEEe
Q 002407 663 -GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS-ADSRIRVVDGID-LVHKFKG 739 (927)
Q Consensus 663 -~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs-~Dg~I~VwD~~~-~~~~~~~ 739 (927)
++++-...+.|.++++......... .........+++.|.+..++++-. ..+.|..++... ....+.
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~---------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~- 161 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLF---------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII- 161 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE---------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEE---------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-
Confidence 4455556678999998764322211 133456789999987664444432 357888888532 222221
Q ss_pred ecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCC
Q 002407 740 FRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 740 ~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~ 775 (927)
.........++|++++..|+.+. ..+.|+.+++...
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 12234567899999777666654 5677999998753
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.31 E-value=0.099 Score=64.15 Aligned_cols=207 Identities=9% Similarity=-0.009 Sum_probs=127.7
Q ss_pred EEEccCCCCEEEEEecCC-cEEE-EEeCCCcEEEEeCCCC----cEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEE
Q 002407 561 CSFQGHLDDVLDLSWSKS-QHLL-SSSMDKTVRLWHLSSK----TCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVR 633 (927)
Q Consensus 561 ~~l~gH~~~V~~l~~spd-~~L~-Sgs~DgtV~lWDl~t~----~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~ 633 (927)
..+......+..|+|.+. +.|+ +-...+.|+.+++... .....+. .-.....|++.+..++++++-...+.|.
T Consensus 417 ~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 417 TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence 334444567789999874 5554 4455678999998753 2233333 3456778999884556666666778899
Q ss_pred EEeCCCCcEEEecc-CCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 634 IWSIPERQVVDWND-LHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 634 IWDl~t~~~v~~~~-~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+.++.......+.. .-.....|++.|.+.+|+.... .+.|...++......... .......+.|++.+
T Consensus 497 v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv---------~~~l~~P~GLavD~ 567 (791)
T 3m0c_C 497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDL 567 (791)
T ss_dssp EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---------CSSCSCEEEEEEET
T ss_pred EEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE---------eCCCCCceEEEEec
Confidence 99998765544433 3356899999998666666543 267999998765443222 13345688999998
Q ss_pred CCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
.+..++++-.....|..++... ....+...........|++.. ++++++-...+.|...+..++..
T Consensus 568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSD 635 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCC
T ss_pred CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcc
Confidence 7775556556678899998532 222222212223345666633 23344444567788887666544
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.22 E-value=0.045 Score=60.15 Aligned_cols=182 Identities=13% Similarity=0.234 Sum_probs=116.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccC---CCC---EEEEEEC---CCcEEEEeC--CCCcEEEecc
Q 002407 579 QHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPV---DDR---YFISGSL---DAKVRIWSI--PERQVVDWND 647 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~---dg~---~L~sgs~---Dg~I~IWDl--~t~~~v~~~~ 647 (927)
.+++.....+-|.+||+ +++.++.+.. ..++.+..-|. .++ ++++... +++|.+|++ .++++.....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 56777788889999999 7888887754 56777776650 122 2333333 478999977 4555443322
Q ss_pred ------CC-CcEEEEEE--CCC-CC-EEEEEECCCeEEEEECC---CC----eeeeecccccccccccCCCCCeEEEEEc
Q 002407 648 ------LH-EMVTAACY--TPD-GQ-GALVGSYKGSCHLYNTS---EN----KLQQKSPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 648 ------~~-~~V~sla~--spd-g~-~l~tgs~Dg~I~IwDl~---~~----~~~~~~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
.. ..+..+|+ +|. ++ ++++...+|.+..|++. .+ +++..+ .....+-.++..
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f----------~lgsq~EgcvvD 188 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF----------KMNSQTEGMAAD 188 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE----------ECSSCEEEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe----------cCCCCcceEEEc
Confidence 11 45666777 774 44 68888889999999883 23 333332 234568888888
Q ss_pred CCCCcEEEEEECCCcEEEEECC-----c--ceEEEEeecCCcceEEEEE--ecCCC-EEEEEE-CCCcEEEEECC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGI-----D--LVHKFKGFRNTNSQISASL--TANGR-YVVSAS-EDSYVYVWKYE 773 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~-----~--~~~~~~~~~~~~~v~sv~f--spdg~-~Lasgs-~Dg~I~IWdl~ 773 (927)
+... .|+++-++.-|..|+.. . .+..+........+..+++ .++++ ||++++ .+..+.|||..
T Consensus 189 d~~g-~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 189 DEYG-RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTT-EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCC-eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 8665 79999998777777732 1 2222211111235667777 56666 666666 56789999996
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.097 Score=60.47 Aligned_cols=209 Identities=8% Similarity=0.030 Sum_probs=116.5
Q ss_pred CEEEEEe-------cCC-cEEEEEeCCC-------cEEEEeCCC-CcEE-----EEEecCCceEEEEEccCCCCEEEEEE
Q 002407 569 DVLDLSW-------SKS-QHLLSSSMDK-------TVRLWHLSS-KTCL-----KIFSHSDYVTCIQFNPVDDRYFISGS 627 (927)
Q Consensus 569 ~V~~l~~-------spd-~~L~Sgs~Dg-------tV~lWDl~t-~~~~-----~~~~h~~~V~~v~fsp~dg~~L~sgs 627 (927)
....|+| +++ ..|+.+...+ .|.+++... +... ..+.--.....++++|.++.++++-.
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~ 266 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY 266 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence 3566777 776 4355555443 255665333 1111 12221123457788995566666666
Q ss_pred CCCcEEEEeCC-------CCcE--------------EEeccCCCcEEEEEECCCCCEEEEE-ECCCeEEEEECC--CCee
Q 002407 628 LDAKVRIWSIP-------ERQV--------------VDWNDLHEMVTAACYTPDGQGALVG-SYKGSCHLYNTS--ENKL 683 (927)
Q Consensus 628 ~Dg~I~IWDl~-------t~~~--------------v~~~~~~~~V~sla~spdg~~l~tg-s~Dg~I~IwDl~--~~~~ 683 (927)
.++.|..+|+. ++.+ +...........++|+|+|++|.++ +..+.|+.++.. .+.+
T Consensus 267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~ 346 (496)
T 3kya_A 267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF 346 (496)
T ss_dssp TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee
Confidence 77889999987 5543 1122233457899999999965555 456788886653 3322
Q ss_pred eeecccccc--c------ccccCCCCCeE-EEEEc-------CCCCcEEEEEECCCcEEEEECCcceEEEEeecC-----
Q 002407 684 QQKSPINLQ--N------KKKRSHQRKIT-GFQFA-------PGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRN----- 742 (927)
Q Consensus 684 ~~~~~i~~~--~------~~~~~h~~~Vt-sl~fs-------pdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~----- 742 (927)
.....+.-. . ........... .++.. +++ .++++-.....|+.++....+..+.+...
T Consensus 347 ~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~ 425 (496)
T 3kya_A 347 ITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLA 425 (496)
T ss_dssp CCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHH
T ss_pred cccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEECCCCEEEEEeCCCCEEEEeccccccccc
Confidence 100000000 0 00011223345 44454 333 35666677889999995555555544311
Q ss_pred -----------------CcceEEEEEecC-CCEEEEEECCCcEEEEECCCCCCc
Q 002407 743 -----------------TNSQISASLTAN-GRYVVSASEDSYVYVWKYEAESRP 778 (927)
Q Consensus 743 -----------------~~~v~sv~fspd-g~~Lasgs~Dg~I~IWdl~s~~~~ 778 (927)
-.....++++++ |.++++=.....|+.++++.....
T Consensus 426 ~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 426 DGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp HSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 123567899997 666666666778999998775443
No 289
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.18 E-value=1.1 Score=57.36 Aligned_cols=323 Identities=12% Similarity=0.036 Sum_probs=152.5
Q ss_pred eeeeeecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCC------CCEEEEEeC-CCcEEEEe
Q 002407 412 RSSSATDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLD------GRYLASAGE-DCVIHVWQ 484 (927)
Q Consensus 412 ~~~sa~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpd------G~~LaSgs~-DgtVrVWd 484 (927)
...++..+.+ ++++ . ++.+..+....+++... ...++ ...|.|+++.|. ++++|.|.. |++|+|++
T Consensus 516 I~~As~n~~~-vvva-~-g~~l~~fel~~~~L~~~-~~~~l---~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s 588 (1158)
T 3ei3_A 516 ISVASCNSSQ-VVVA-V-GRALYYLQIHPQELRQI-SHTEM---EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK 588 (1158)
T ss_dssp CCEEEECSSE-EEEE-E-TTEEEEEEEETTEEEEE-EEEEC---SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCE-EEEE-E-CCEEEEEEeeCCceeee-cccCC---CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence 4444444443 3333 2 35565665444433322 11222 557999999863 369999996 99999999
Q ss_pred cCcCcccceeecccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc
Q 002407 485 VVESERKGELLEKQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ 564 (927)
Q Consensus 485 v~~~~~~~~l~~~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~ 564 (927)
+.+.+.+...... .......+..+.+ ....++..+-.++.+........ .. ..... + ..+-
T Consensus 589 L~~l~~~~~~~L~-~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~----tg---~l~d~-r---------~~~L 649 (1158)
T 3ei3_A 589 LPSFELLHKEMLG-GEIIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIE----TG---LLSDR-K---------KVTL 649 (1158)
T ss_dssp TTTCCEEEEEECC-SSCCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTT----TC---CEEEE-E---------EEEC
T ss_pred CCCCCeEEEEECC-CCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCC----CC---ccccc-e---------eEEc
Confidence 9865444322111 0112222333333 12233444444444322211100 00 00000 0 0111
Q ss_pred cCCCCEEEEEecCC-c-EEEEEeCCCcEEEEeCCCCcEEEEEecCCce-EEEEEccCC-CCEEEEEECCCcEEEEeCCCC
Q 002407 565 GHLDDVLDLSWSKS-Q-HLLSSSMDKTVRLWHLSSKTCLKIFSHSDYV-TCIQFNPVD-DRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 565 gH~~~V~~l~~spd-~-~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V-~~v~fsp~d-g~~L~sgs~Dg~I~IWDl~t~ 640 (927)
| ..++.-..+... + .+++.+ +....++.-. ++....--.-..+ ....|+... .+-++.. .++.++|..+...
T Consensus 650 G-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~ 725 (1158)
T 3ei3_A 650 G-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEI 725 (1158)
T ss_dssp C-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCS
T ss_pred C-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEeccc
Confidence 2 122222222211 1 222222 3333333322 2221110011223 233453311 2334433 3556888877543
Q ss_pred c--EEEeccCCCcEEEEEECCCCCEEEEEECC------------------------------------------------
Q 002407 641 Q--VVDWNDLHEMVTAACYTPDGQGALVGSYK------------------------------------------------ 670 (927)
Q Consensus 641 ~--~v~~~~~~~~V~sla~spdg~~l~tgs~D------------------------------------------------ 670 (927)
+ .+........+..++++|..+.++++..+
T Consensus 726 ~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 805 (1158)
T 3ei3_A 726 QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVE 805 (1158)
T ss_dssp SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEE
T ss_pred CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCcee
Confidence 2 33455667889999999988876665422
Q ss_pred -CeEEEEECCCCeeeeecccccccccccCCCCCeEEEE---EcCCCCcEEEEEE----------CCCcEEEEECC--cce
Q 002407 671 -GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQ---FAPGSSSEVLVTS----------ADSRIRVVDGI--DLV 734 (927)
Q Consensus 671 -g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~---fspdg~~~Llsgs----------~Dg~I~VwD~~--~~~ 734 (927)
+.|+++|..+.+.+..+.+ .....+.+++ |..+...+|++|. ..|.|++|+.. ++.
T Consensus 806 ~s~i~lidp~t~~~i~~~~l--------~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~ 877 (1158)
T 3ei3_A 806 VHNLLIIDQHTFEVLHAHQF--------LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ 877 (1158)
T ss_dssp EEEEEEEETTTCCEEEEEEC--------CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE
T ss_pred eEEEEEEeCCCCeEEEEEeC--------CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE
Confidence 1355566555554444332 2233445544 4434345788876 34789999853 222
Q ss_pred EEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 735 HKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 735 ~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
... .....+.+.+++-- +|+ |++|- ...|+||++...+
T Consensus 878 lv~-~~~v~g~v~al~~~-~g~-Lla~i-g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 878 TVA-EKEVKGAVYSMVEF-NGK-LLASI-NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEE-EEEESSCEEEEEEE-TTE-EEEEE-TTEEEEEEECTTS
T ss_pred EEE-EEEcCCcCEEEeee-CCE-EEEEc-CCEEEEEECCCCc
Confidence 222 22335667776532 454 44443 4789999997654
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.17 E-value=0.044 Score=59.76 Aligned_cols=202 Identities=8% Similarity=0.096 Sum_probs=126.1
Q ss_pred cCCCCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEE-Eec-------CCceEEEEE---ccCCCCEEEEEEC---
Q 002407 565 GHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKI-FSH-------SDYVTCIQF---NPVDDRYFISGSL--- 628 (927)
Q Consensus 565 gH~~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~-~~h-------~~~V~~v~f---sp~dg~~L~sgs~--- 628 (927)
....--.++.|++. +.|+.++ ..++|..|+...+....+ +.. ...+..|.| .| +++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~a 88 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKS 88 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccc
Confidence 33344457889875 7777777 689999999986654444 222 114689999 68 6777775431
Q ss_pred ----------CCcEEEEeCC---CCcEEEeccC--------------CCcEEEEEECCCCCEEEEEECC-CeEEEEECCC
Q 002407 629 ----------DAKVRIWSIP---ERQVVDWNDL--------------HEMVTAACYTPDGQGALVGSYK-GSCHLYNTSE 680 (927)
Q Consensus 629 ----------Dg~I~IWDl~---t~~~v~~~~~--------------~~~V~sla~spdg~~l~tgs~D-g~I~IwDl~~ 680 (927)
+..|..||+. +++.+..... ......++..++|+..++++.. +.|..++...
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG 168 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC
Confidence 5779999999 7766543332 1258899999999999999988 8888888775
Q ss_pred CeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE-EEEee--c---CCcceEE-EEEec
Q 002407 681 NKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH-KFKGF--R---NTNSQIS-ASLTA 753 (927)
Q Consensus 681 ~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~-~~~~~--~---~~~~v~s-v~fsp 753 (927)
....... .... ........+.|+++|++. .|++....+.|..+|...... .+... . ....... +..-.
T Consensus 169 ~~~~~~~-~~~~---~~~~~~G~nGIv~~pdg~-~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 169 KTVSTFA-WESG---NGGQRPGYSGITFDPHSN-KLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp CCEEEEE-ECCC---CSSSCCSCSEEEEETTTT-EEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred CEEeeee-ecCC---CcccccCcceEEEeCCCC-EEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 5332211 1110 112234578999999987 555554599999999664332 11111 0 1111223 23335
Q ss_pred CCCE-EEEEECCCcEEEEEC
Q 002407 754 NGRY-VVSASEDSYVYVWKY 772 (927)
Q Consensus 754 dg~~-Lasgs~Dg~I~IWdl 772 (927)
+|+. |++....+.+.+.+-
T Consensus 244 ~G~vllV~~~~~~~~~l~S~ 263 (334)
T 2p9w_A 244 GNESVLVGARAPYAISFRSW 263 (334)
T ss_dssp TTEEEEEEEETTEEEEEECS
T ss_pred CCEEEEEEcCCCCEEEEECC
Confidence 7777 455555555545443
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.15 E-value=0.13 Score=63.06 Aligned_cols=182 Identities=9% Similarity=-0.058 Sum_probs=116.7
Q ss_pred CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC----cEEEecc-CCCcEEEEEECCC
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----QVVDWND-LHEMVTAACYTPD 660 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----~~v~~~~-~~~~V~sla~spd 660 (927)
....|+..++........+.....+..|+|.+.++.++++-...+.|+.+++... ....... .-..+..|++.+.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 4467888888877766666666778899999844555555555678999988753 2222222 3356678999887
Q ss_pred CCEEE-EEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCcceEEEE
Q 002407 661 GQGAL-VGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGIDLVHKFK 738 (927)
Q Consensus 661 g~~l~-tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~~~~~~~ 738 (927)
+..|+ +-...+.|.+.++......... .........|++.|....++++-... +.|.+.++........
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~---------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEE---------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 75554 4455688999999765433221 12334588999999766444444333 7888888644333222
Q ss_pred eecCCcceEEEEEecCCCEEEEEE-CCCcEEEEECCCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSAS-EDSYVYVWKYEAES 776 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IWdl~s~~ 776 (927)
..........|++++.+..|+.+. ....|...++....
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 233345678899998777776664 45678888887644
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.053 Score=62.63 Aligned_cols=158 Identities=9% Similarity=0.199 Sum_probs=100.1
Q ss_pred ceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCcEEEeccCC----CcEEEEEE-------CCCCCEEEEEECCC-----
Q 002407 609 YVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQVVDWNDLH----EMVTAACY-------TPDGQGALVGSYKG----- 671 (927)
Q Consensus 609 ~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~----~~V~sla~-------spdg~~l~tgs~Dg----- 671 (927)
....|+|.|. .++++++-...+.|++.|+.++.+..+.... ..+..++| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678899983 3555555554567999999998877655432 35899999 99999777776654
Q ss_pred --eEEEEECCC-Ceeee-e--cccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECC-------c--c---
Q 002407 672 --SCHLYNTSE-NKLQQ-K--SPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGI-------D--L--- 733 (927)
Q Consensus 672 --~I~IwDl~~-~~~~~-~--~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~-------~--~--- 733 (927)
.|.+++... +.... . ..+ ........++++|++..++++-..++.|..+|.. . .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v--------~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLI--------AAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEE--------EEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CceEEEEecCCCCceeecccceee--------ccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 266666433 22210 0 000 0112345778899766577777788899999954 1 1
Q ss_pred --------eEEEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCC
Q 002407 734 --------VHKFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEA 774 (927)
Q Consensus 734 --------~~~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s 774 (927)
...+...........++|+|+|++|+.+ .....|+.+++..
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 1122222233446789999999965555 4566788876644
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.96 E-value=0.61 Score=50.56 Aligned_cols=152 Identities=11% Similarity=0.005 Sum_probs=91.4
Q ss_pred cCCCCEEEEEecCCcEEEEEeCCCcEEEE-eC--CCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc
Q 002407 565 GHLDDVLDLSWSKSQHLLSSSMDKTVRLW-HL--SSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ 641 (927)
Q Consensus 565 gH~~~V~~l~~spd~~L~Sgs~DgtV~lW-Dl--~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~ 641 (927)
++...+..+.+.+++.++..+..+.|..- |- .+-+.+. ......+..+.+.+ ++.++ .++.+|.+++++...++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEE
T ss_pred CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCC
Confidence 34457888999988666666666665543 42 2222221 23556788999988 76654 55567888776533333
Q ss_pred EEEecc-----CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 642 VVDWND-----LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 642 ~v~~~~-----~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
.-.... ....+..+.+.+++..++++ .+|.| ++....++.-...... ......++.+.|.+++ .+
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~------~~~~~~~~~v~~~~~~--~~ 306 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDV------KKVPSNFYKILFFSPD--QG 306 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGG------TTSSSCCCEEEEEETT--EE
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCcc------CCCCCCeEEEEEECCC--ce
Confidence 222111 12358899999888766665 46766 4555555443322110 0123567788887543 57
Q ss_pred EEEECCCcEEEEE
Q 002407 717 LVTSADSRIRVVD 729 (927)
Q Consensus 717 lsgs~Dg~I~VwD 729 (927)
++++.+|.|.-++
T Consensus 307 ~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 307 FILGQKGILLRYV 319 (327)
T ss_dssp EEECSTTEEEEEC
T ss_pred EEEcCCceEEEEc
Confidence 8888899887776
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.94 E-value=0.098 Score=57.49 Aligned_cols=137 Identities=9% Similarity=0.191 Sum_probs=93.4
Q ss_pred CCcEEEEeC--CCCcEEEEEe-------cC-CceEEEEE--ccCCCC-EEEEEECCCcEEEEeCC-------CCcEEEec
Q 002407 587 DKTVRLWHL--SSKTCLKIFS-------HS-DYVTCIQF--NPVDDR-YFISGSLDAKVRIWSIP-------ERQVVDWN 646 (927)
Q Consensus 587 DgtV~lWDl--~t~~~~~~~~-------h~-~~V~~v~f--sp~dg~-~L~sgs~Dg~I~IWDl~-------t~~~v~~~ 646 (927)
+++|.+|++ .+++ +..+. .. ..+..+++ +|..+. ++++...+|.+..|++. +.+++..+
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999976 3443 44442 11 55677777 774454 68888889999999882 34567777
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECC-----CCeeeeecccccccccccCCCCCeEEEEEc--CCCCcEEEEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS-----ENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVT 719 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~-----~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~Llsg 719 (927)
.....+..+.+.+....|+++-.+.-|..|+.. +.+.+.... .......+..|++. +++..+|+++
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-------~g~l~aDvEGLai~~~~~g~gyLivS 249 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-------GRHLTRDIEGLTIYYAADGKGYLMAS 249 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-------SSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred cCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-------CCccccCcceEEEEecCCCCEEEEEE
Confidence 778899999999999999999999778888855 233332221 01223468888884 5555355555
Q ss_pred E-CCCcEEEEECC
Q 002407 720 S-ADSRIRVVDGI 731 (927)
Q Consensus 720 s-~Dg~I~VwD~~ 731 (927)
+ .+.++.|||..
T Consensus 250 sQG~~s~~Vydr~ 262 (355)
T 3amr_A 250 SQGNSSYAIYDRQ 262 (355)
T ss_dssp EGGGTEEEEEESS
T ss_pred cCCCCEEEEEECC
Confidence 5 67899999963
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.65 E-value=0.0028 Score=77.06 Aligned_cols=199 Identities=9% Similarity=-0.019 Sum_probs=118.1
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEeCCC----CcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSS----KTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t----~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
..+..|+|.+. +.|+.+. ..+.|+.+++.. ......+. .-.....|++.+..++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45667889875 6665554 467899999875 22222221 12235678887645666666556788999998876
Q ss_pred cEEEeccC-CCcEEEEEECCCCCEEEEEEC-C-CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 641 QVVDWNDL-HEMVTAACYTPDGQGALVGSY-K-GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 641 ~~v~~~~~-~~~V~sla~spdg~~l~tgs~-D-g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
....+... ......+++.|.+.+|+.+.. . +.|..+++......... .......+.|+|+|++..+++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~---------~~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---------TENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES---------CSSCSSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE---------eCCCCCccEEEEeccCCEEEE
Confidence 65544432 245678899996655555433 2 67888777543221111 122345678999998776777
Q ss_pred EEECCCcEEEEECCc-ceEEEEe-ecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 718 VTSADSRIRVVDGID-LVHKFKG-FRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~-~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
+-...+.|.+++... ....+.. .........+++..+ .++++....+.|..++..++.
T Consensus 557 aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 777788999998532 2222221 111222344555543 444555566788888876543
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.64 E-value=0.06 Score=58.71 Aligned_cols=167 Identities=8% Similarity=0.036 Sum_probs=108.5
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEe-ccC-----C--CcEEEEEE---CCCCCEEEEEEC------
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDW-NDL-----H--EMVTAACY---TPDGQGALVGSY------ 669 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~-~~~-----~--~~V~sla~---spdg~~l~tgs~------ 669 (927)
.....+++|++.++.++++.-..++|..|+...+..... +.. . ..+..|.| .|++.++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 445668899884444444444789999999986654443 221 1 14688999 688777776442
Q ss_pred -------CCeEEEEECC---CCeeeeecccccccc---cccC-CCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCc-c
Q 002407 670 -------KGSCHLYNTS---ENKLQQKSPINLQNK---KKRS-HQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGID-L 733 (927)
Q Consensus 670 -------Dg~I~IwDl~---~~~~~~~~~i~~~~~---~~~~-h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~-~ 733 (927)
+..|..||+. +++......+..... ++.+ .......++..++|. ..++++.. +.|..++... .
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCC
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCE
Confidence 5779999999 777655443311000 0001 123488999999987 67777777 8888887532 2
Q ss_pred eEEEEeec----CCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 734 VHKFKGFR----NTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 734 ~~~~~~~~----~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+.... .......++++|+|++|++....|.|..+|+..
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 23222111 112245889999999998887799999999984
No 297
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.43 E-value=3.6 Score=52.55 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=104.0
Q ss_pred CCCcEEEEeCCCCc--EEEEEecCCceEEEEEccCCCCEEEEEECC----------------------------------
Q 002407 586 MDKTVRLWHLSSKT--CLKIFSHSDYVTCIQFNPVDDRYFISGSLD---------------------------------- 629 (927)
Q Consensus 586 ~DgtV~lWDl~t~~--~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D---------------------------------- 629 (927)
.++.++|..+..-+ .++.+.....+..++++| ..+.++.+..+
T Consensus 713 ~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1158)
T 3ei3_A 713 NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSS 791 (1158)
T ss_dssp CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC--
T ss_pred cCCceEEEEecccCCeeEEEEeCCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccc
Confidence 34568888876433 345556777888999998 55544433211
Q ss_pred ---------------CcEEEEeCCCCcEEEeccC--CCcEEEEEE---CC-CCCEEEEEE----------CCCeEEEEEC
Q 002407 630 ---------------AKVRIWSIPERQVVDWNDL--HEMVTAACY---TP-DGQGALVGS----------YKGSCHLYNT 678 (927)
Q Consensus 630 ---------------g~I~IWDl~t~~~v~~~~~--~~~V~sla~---sp-dg~~l~tgs----------~Dg~I~IwDl 678 (927)
+.|++.|-.+.+.+..+.. .+.+.+++. .. ...+|++|+ ..|.|++|++
T Consensus 792 ~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v 871 (1158)
T 3ei3_A 792 STAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQY 871 (1158)
T ss_dssp --------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEE
T ss_pred cccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEE
Confidence 2366777666666554333 345555553 22 247899887 3578999999
Q ss_pred CCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEecCCC
Q 002407 679 SENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 679 ~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
..+++..... ....+.|++++-.. | +|+++- ..+|++|+... .+. .... ....+..+.....+.
T Consensus 872 ~~~kL~lv~~--------~~v~g~v~al~~~~-g--~Lla~i-g~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 872 SDGKLQTVAE--------KEVKGAVYSMVEFN-G--KLLASI-NSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGD 937 (1158)
T ss_dssp ETTEEEEEEE--------EEESSCEEEEEEET-T--EEEEEE-TTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETT
T ss_pred ECCEEEEEEE--------EEcCCcCEEEeeeC-C--EEEEEc-CCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCC
Confidence 7555443322 24467788887554 3 455544 57899999543 222 2111 111133334444678
Q ss_pred EEEEEECCCcEEEEECCC
Q 002407 757 YVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 757 ~Lasgs~Dg~I~IWdl~s 774 (927)
+++.|..-..|.++.++.
T Consensus 938 ~I~vgD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKP 955 (1158)
T ss_dssp EEEEEESSBCEEEEEEET
T ss_pred EEEEEEhhheEEEEEEEc
Confidence 999999888888877654
No 298
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.42 E-value=0.43 Score=52.47 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecc-cccCccccEEEEccCCC
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEK-QEDGHLNMLLLANGSPE 514 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~-~~~~~~~~v~~v~~spd 514 (927)
-...+.|+|.|+|+++++ ..+|.|++++ +++. ..+... ...........++++|+
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPR 85 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTT
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCC
Confidence 345789999999996555 5679999988 3331 111110 11112345567788887
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.36 E-value=1.5 Score=48.26 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=91.9
Q ss_pred CEEEEEecCC----cEEEEEeC----C----CcEEEEeCCCC--c---E--E-EEEe--cCCceEEEEEccCCCCEEEEE
Q 002407 569 DVLDLSWSKS----QHLLSSSM----D----KTVRLWHLSSK--T---C--L-KIFS--HSDYVTCIQFNPVDDRYFISG 626 (927)
Q Consensus 569 ~V~~l~~spd----~~L~Sgs~----D----gtV~lWDl~t~--~---~--~-~~~~--h~~~V~~v~fsp~dg~~L~sg 626 (927)
....|+++|+ +.|+.+.. + ..|..|+.... . . + ..+. .......|+|.| ++.++++.
T Consensus 74 g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~ 152 (354)
T 3a9g_A 74 GLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITT 152 (354)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEEC
T ss_pred ceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEE
Confidence 3566777775 55544433 2 45666665543 1 1 1 1122 122356799999 88877664
Q ss_pred EC-------------CCcEEEEeCCCC--------cEEEeccCCCcEEEEEECC-CCCEEEEEECCC---eEEEEECCCC
Q 002407 627 SL-------------DAKVRIWSIPER--------QVVDWNDLHEMVTAACYTP-DGQGALVGSYKG---SCHLYNTSEN 681 (927)
Q Consensus 627 s~-------------Dg~I~IWDl~t~--------~~v~~~~~~~~V~sla~sp-dg~~l~tgs~Dg---~I~IwDl~~~ 681 (927)
+. .|.|.-++.... ....+.........++|+| +|.++++-.... .|.+.. .+
T Consensus 153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G 230 (354)
T 3a9g_A 153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KG 230 (354)
T ss_dssp CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TT
T ss_pred CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CC
Confidence 32 245555555432 0111112223456799999 566544432221 233322 22
Q ss_pred eeee---------ecccccccccccCCCCCeEEEEEc-------CCCCcEEEEEECCCcEEEEECCcc--eE-EEEeec-
Q 002407 682 KLQQ---------KSPINLQNKKKRSHQRKITGFQFA-------PGSSSEVLVTSADSRIRVVDGIDL--VH-KFKGFR- 741 (927)
Q Consensus 682 ~~~~---------~~~i~~~~~~~~~h~~~Vtsl~fs-------pdg~~~Llsgs~Dg~I~VwD~~~~--~~-~~~~~~- 741 (927)
.... ......+.............++|. .++ .++++....+.|...+.... .. ......
T Consensus 231 ~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 309 (354)
T 3a9g_A 231 GNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNMEVRKISTFFKN 309 (354)
T ss_dssp CBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred CcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence 1100 000000000000123457888884 344 35555556677888775421 21 111121
Q ss_pred CCcceEEEEEecCCCEEEEEE
Q 002407 742 NTNSQISASLTANGRYVVSAS 762 (927)
Q Consensus 742 ~~~~v~sv~fspdg~~Lasgs 762 (927)
....+..+++.|||.+.++..
T Consensus 310 ~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 310 VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCeeEEEECCCCcEEEEEe
Confidence 235678899999997766654
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.23 E-value=1.8 Score=46.96 Aligned_cols=228 Identities=13% Similarity=0.161 Sum_probs=132.9
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEeccCC-----
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWNDLH----- 649 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~~~----- 649 (927)
+|...+++--...++.|+|+++++.++.+.....|.-=.|- +.+.|+-.+ +..|+-|++.. ..++..++.+
T Consensus 75 nP~~~ViALrag~~LQiFnletK~klks~~~~e~VvfWkWi--s~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~ 151 (365)
T 2xzh_A 75 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 151 (365)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEEEEEEC--SSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTT
T ss_pred CCCccEEEEecCCeEEEechHHhhhhcceecCCccEEEEec--CCCeEEEEc-CCcEEEEcccCCCCCceeeecchhccc
Confidence 55533333223688999999999999999988888887886 455555554 46799999974 3444444433
Q ss_pred CcEEEEEECCCCCEEEEEEC-------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC--CCCcEEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGSY-------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP--GSSSEVLVTS 720 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs~-------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp--dg~~~Llsgs 720 (927)
..|..-..+++.++++..+- .|.+.+|..+.+..... .+|...-..+.+.. ....+++.+.
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~i----------eGhaa~F~~~~~~g~~~~~~lf~fa~ 221 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAV 221 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEE----------CCSEEEEEEECCTTCSSCEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccccee----------eeeeeeeEEEecCCCCCCceEEEEEE
Confidence 46777888899998776542 36788998877654332 23433222222211 1111222222
Q ss_pred C---CCcEEEEECCcc--------eEEEEee----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc--
Q 002407 721 A---DSRIRVVDGIDL--------VHKFKGF----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS-- 783 (927)
Q Consensus 721 ~---Dg~I~VwD~~~~--------~~~~~~~----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~-- 783 (927)
. .++++|.+.... ......+ .......++..++.-..+..-+.-|.|++||++++...-..+-
T Consensus 222 r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~ 301 (365)
T 2xzh_A 222 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 301 (365)
T ss_dssp EETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCC
Confidence 2 257888874221 1111111 0123345778888888899999999999999999876533211
Q ss_pred cceeeeeeeecCCCeEEEEecCCceeEEeecCCc
Q 002407 784 ITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 784 ~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~ 817 (927)
-..... ......+..+++.-.|.+....+....
T Consensus 302 d~iF~t-a~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 302 ETIFVT-APHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp SCEEEE-EEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred CceEEe-cccCCCCcEEEEcCCCEEEEEEECccc
Confidence 111111 112233445566666666555554443
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.14 E-value=0.011 Score=71.70 Aligned_cols=179 Identities=8% Similarity=-0.106 Sum_probs=104.5
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEE-ECCCcEEEEeCCC----CcEEEecc-CCCcEEEEEECCC
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISG-SLDAKVRIWSIPE----RQVVDWND-LHEMVTAACYTPD 660 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sg-s~Dg~I~IWDl~t----~~~v~~~~-~~~~V~sla~spd 660 (927)
.+.|+..++.+.+...++.....+..|+|.+ ....|+.. ...+.|+.+++.. ........ .-..+..|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~-~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEET-TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEcccc-ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3578888888776655555445677899998 55555544 4567899999875 22222221 1224556788854
Q ss_pred C-CEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-CcEEEEECCcceEEEE
Q 002407 661 G-QGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-SRIRVVDGIDLVHKFK 738 (927)
Q Consensus 661 g-~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-g~I~VwD~~~~~~~~~ 738 (927)
+ .++++-...+.|.++++.......... ........|++.|.+..++++-... +.|.+++.........
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~---------~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFR---------EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECC---------CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEe---------CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 4 444444556789999987654333221 1223456788998766444444333 7888877432111111
Q ss_pred eecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCC
Q 002407 739 GFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAE 775 (927)
Q Consensus 739 ~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~ 775 (927)
..........++|++++..|+.+ ...+.|.++++...
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 11123345679999876555544 45677999998753
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.99 E-value=1.6 Score=48.19 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=109.3
Q ss_pred CEEEEEecCCcEEEEEe-------------CCCcEEEEeCCC--CcEEEEEec--------CCceEEEEEccC-CCC-EE
Q 002407 569 DVLDLSWSKSQHLLSSS-------------MDKTVRLWHLSS--KTCLKIFSH--------SDYVTCIQFNPV-DDR-YF 623 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs-------------~DgtV~lWDl~t--~~~~~~~~h--------~~~V~~v~fsp~-dg~-~L 623 (927)
...+|...+++.+++++ .+|.|.++|+.+ .+. ..+.. ......|.+.+. ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 44566777888888776 689999999974 232 22221 235677777651 232 34
Q ss_pred EEE-EC--CCcEEEEeCCC--CcE--EEeccCC--CcEEEEEECCCCCEEEEEEC-----------------CCeEEEEE
Q 002407 624 ISG-SL--DAKVRIWSIPE--RQV--VDWNDLH--EMVTAACYTPDGQGALVGSY-----------------KGSCHLYN 677 (927)
Q Consensus 624 ~sg-s~--Dg~I~IWDl~t--~~~--v~~~~~~--~~V~sla~spdg~~l~tgs~-----------------Dg~I~IwD 677 (927)
+++ .. +..|.+|++.. +.. +....+. ...+.+.+.++|.+.++... .|.|+.||
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 45677777654 222 2222222 46899999999987776531 24555555
Q ss_pred CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc--ceEEEEeecCCcceEEEEEec-C
Q 002407 678 TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGID--LVHKFKGFRNTNSQISASLTA-N 754 (927)
Q Consensus 678 l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~~~~~~v~sv~fsp-d 754 (927)
.. +.... ...-...+.++|+|+++.++++-+..+.|..|+... ..............-.+++.+ +
T Consensus 210 ~~--~~~~~----------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 210 PN--DVRVV----------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT 277 (355)
T ss_dssp TT--CCEEE----------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred CC--eEEEe----------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCC
Confidence 53 21111 122345789999999986667777889999998431 121111112234556788888 5
Q ss_pred CCEEEEEECC
Q 002407 755 GRYVVSASED 764 (927)
Q Consensus 755 g~~Lasgs~D 764 (927)
|++.+++..+
T Consensus 278 G~lwva~~~~ 287 (355)
T 3sre_A 278 GDLWVGCHPN 287 (355)
T ss_dssp CCEEEEEESC
T ss_pred CcEEEEecCC
Confidence 8888777644
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.95 E-value=4 Score=48.49 Aligned_cols=138 Identities=9% Similarity=-0.074 Sum_probs=82.2
Q ss_pred CCcEEEEeCCCCcE--EE-eccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCCCeeeeecccccccccccCCCCCeE
Q 002407 629 DAKVRIWSIPERQV--VD-WNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKIT 704 (927)
Q Consensus 629 Dg~I~IWDl~t~~~--v~-~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vt 704 (927)
.+.|+..++..... +. ....-..+.+++|.+.+..|+.+. ..+.|+.+++......... ........
T Consensus 325 ~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~---------~~~~~~p~ 395 (619)
T 3s94_A 325 RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV---------TAQIAHPD 395 (619)
T ss_dssp SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---------CSSCSCCC
T ss_pred ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE---------ECCCCCcC
Confidence 34566666655431 11 112224678899998665555554 5678999988764332221 12234567
Q ss_pred EEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEEC--CCcEEEEECCCC
Q 002407 705 GFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASE--DSYVYVWKYEAE 775 (927)
Q Consensus 705 sl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~--Dg~I~IWdl~s~ 775 (927)
++++.+.+.+++++-...+.|.+.+...................+++.|...+|+.+.. ...|...+++..
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 89998766656677677889999985433222222223456788999997445544432 356776666543
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.92 E-value=1.1 Score=49.14 Aligned_cols=98 Identities=14% Similarity=0.108 Sum_probs=62.7
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEE--e----cCCceEEEEEccCC---CCEEEEEEC-C-----Cc
Q 002407 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIF--S----HSDYVTCIQFNPVD---DRYFISGSL-D-----AK 631 (927)
Q Consensus 567 ~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~--~----h~~~V~~v~fsp~d---g~~L~sgs~-D-----g~ 631 (927)
-.....|+|.|++.|+.+..++.|++++ .++..... . .......|+|+| + +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccE
Confidence 4456799999998888888889999998 44322211 1 235688999999 6 344444433 2 56
Q ss_pred EEEEeCCCCc------EEEecc----CCCcEEEEEECCCCCEEEEE
Q 002407 632 VRIWSIPERQ------VVDWND----LHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 632 I~IWDl~t~~------~v~~~~----~~~~V~sla~spdg~~l~tg 667 (927)
|..|+..... ++.... .......++|.|||.++++-
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 8888876532 122122 11234689999999766654
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.82 E-value=0.71 Score=50.95 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=77.3
Q ss_pred CCcEEEEeCCCC-cE---EEEEec--CCceEEEEEccCCCCEEEEEEC-----------------CCcEEEEeCCCCcEE
Q 002407 587 DKTVRLWHLSSK-TC---LKIFSH--SDYVTCIQFNPVDDRYFISGSL-----------------DAKVRIWSIPERQVV 643 (927)
Q Consensus 587 DgtV~lWDl~t~-~~---~~~~~h--~~~V~~v~fsp~dg~~L~sgs~-----------------Dg~I~IWDl~t~~~v 643 (927)
+.+|.+|++... .. +..+.+ -...+.+.+.+ ++.++++... .|.|..+|. +++.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVR 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCE
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEE
Confidence 456777776543 22 222322 24578999999 8887776541 234555554 3433
Q ss_pred EeccCCCcEEEEEECCCCCEEEEEE-CCCeEEEEECCC-CeeeeecccccccccccCCCCCeEEEEEcC-CCCcEEEEEE
Q 002407 644 DWNDLHEMVTAACYTPDGQGALVGS-YKGSCHLYNTSE-NKLQQKSPINLQNKKKRSHQRKITGFQFAP-GSSSEVLVTS 720 (927)
Q Consensus 644 ~~~~~~~~V~sla~spdg~~l~tgs-~Dg~I~IwDl~~-~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp-dg~~~Llsgs 720 (927)
.....-...+.++|+||++.|+++. ..+.|..|++.. +.+.....+ ......-.+++.+ +|. +.+++.
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--------~~~g~PDGi~vD~e~G~-lwva~~ 285 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--------SFDTLVDNISVDPVTGD-LWVGCH 285 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--------ECSSEEEEEEECTTTCC-EEEEEE
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--------eCCCCCceEEEeCCCCc-EEEEec
Confidence 3333345688999999998877765 568899999864 333222111 1135577888888 475 444444
Q ss_pred CC-CcEEEEE
Q 002407 721 AD-SRIRVVD 729 (927)
Q Consensus 721 ~D-g~I~VwD 729 (927)
.+ +.|..|+
T Consensus 286 ~~g~~v~~~~ 295 (355)
T 3sre_A 286 PNGMRIFFYD 295 (355)
T ss_dssp SCHHHHHSCC
T ss_pred CCceEEEEEC
Confidence 33 3444455
No 306
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.44 E-value=6.6 Score=47.44 Aligned_cols=314 Identities=9% Similarity=0.029 Sum_probs=168.8
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
..|....+|.|...| |..|+...+.+...............|.+|...+++..|..|.. +-|..++..+++... +.
T Consensus 152 ~~d~~g~lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~- 227 (758)
T 3ott_A 152 IRTKDNQIYVGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TE- 227 (758)
T ss_dssp EECTTCCEEEEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EE-
T ss_pred EEcCCCCEEEEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-cc-
Confidence 344455567776655 66677665544322110000001235899988887765554543 457778876553221 11
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc--------cCCC
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ--------GHLD 568 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~--------gH~~ 568 (927)
......|..+....++.+.+.. ..+..... .....+..+. -...
T Consensus 228 ---~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~ 279 (758)
T 3ott_A 228 ---AFHNNSIKSLALDGNGDLLAGT-DNGLYVYH------------------------NDTTPLQHIIHDSRNIQSLTNN 279 (758)
T ss_dssp ---EEEEEEEEEEEECTTCCEEEEE-TTEEEEEC------------------------CTTSCCEEECCCTTCTTSCSCS
T ss_pred ---CCCCCeEEEEEEcCCCCEEEEe-CCceeEEe------------------------cCCCcEEEEEcCCCCcCcCCcC
Confidence 0112345666666666666554 22322111 0111111111 1234
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFS--------HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.|.+|....++.|..|+..| |.++... . ....+. ....|.++.-.. ++.+. .|+.+| +..++..++
T Consensus 280 ~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~-~g~lW-iGt~~G-l~~~~~~~~ 353 (758)
T 3ott_A 280 IIWNIFADQEHNIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDS-KGFYW-FGGANG-LIRFTDPAG 353 (758)
T ss_dssp CEEEEEECTTCCEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECT-TCCEE-EEETTE-EEEESCTTS
T ss_pred eEEEEEEcCCCCEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcC-CCCEE-EeeCCc-ceeeccccc
Confidence 58888887778888888777 5554432 2 112221 134688888776 66544 455554 666765543
Q ss_pred c--EEEecc--------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcC
Q 002407 641 Q--VVDWND--------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAP 710 (927)
Q Consensus 641 ~--~v~~~~--------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fsp 710 (927)
+ ...... ....|.++.-..+|. |.+|+ ++-|..||..+++........ .........|.++...+
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~i~~d~ 428 (758)
T 3ott_A 354 ERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVD---NTGTYNTNWTYYIFEDT 428 (758)
T ss_dssp SCCCCEEECTTCSSSCCSCSCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEEC---CC--CBSSSEEEEEECT
T ss_pred ccceeEEeccCCcCCCCCCCceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCC---CcCCCCCceEEEEEEcC
Confidence 2 111111 124688888888876 45566 457999999887654321100 00001235688888777
Q ss_pred CCCcEEEEEECCCcEEEEECCcc-------e---EEEEee--cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 711 GSSSEVLVTSADSRIRVVDGIDL-------V---HKFKGF--RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 711 dg~~~Llsgs~Dg~I~VwD~~~~-------~---~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
++ .|.+|+..+-|.++|.... . ..+... .....|.++...++|.+.+.++..+-|..|+..+.
T Consensus 429 ~g--~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~ 503 (758)
T 3ott_A 429 AG--QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTR 503 (758)
T ss_dssp TS--EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTT
T ss_pred CC--CEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCC
Confidence 65 5778887777888884321 1 111111 11234788888888987764444455888887654
No 307
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.38 E-value=0.19 Score=51.56 Aligned_cols=181 Identities=8% Similarity=0.009 Sum_probs=102.1
Q ss_pred EEEEEeCCCcEEEEeCCCCc------EEEEEec--CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc
Q 002407 580 HLLSSSMDKTVRLWHLSSKT------CLKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 580 ~L~Sgs~DgtV~lWDl~t~~------~~~~~~h--~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~ 651 (927)
.|+....| +|+.=.+..+. ....+.. =..+..++|+| ++.+.++ .+|.+.-.+..+.....+......
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence 45566666 66655555443 2233333 24678999999 8886666 677777777655333333333223
Q ss_pred --------EEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC
Q 002407 652 --------VTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS 723 (927)
Q Consensus 652 --------V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg 723 (927)
..++.|.|+|.+.++ .||.|+-++..+.......-. ..+....--..+..|.|.|+|. |.+.. |+
T Consensus 82 IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~--Lyav~-dg 154 (236)
T 1tl2_A 82 IGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIAR--ATEVGSGGWSGFKFLFFHPNGY--LYAVH-GQ 154 (236)
T ss_dssp EECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH--SEEEECSSGGGEEEEEECTTSC--EEEEE-TT
T ss_pred ecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceecc--ccEeccCCCCceEEEEECCCce--EEEEe-CC
Confidence 378999999988877 569998887643221111000 0000012235689999999985 44444 88
Q ss_pred cEEEEECC-c------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 724 RIRVVDGI-D------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 724 ~I~VwD~~-~------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.++-.... . ......+......-..+.|.+++.+.++. ++ +||.....
T Consensus 155 ~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 155 QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred cEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 75443311 0 01122222222334456799999877766 66 55555443
No 308
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.16 E-value=5.8 Score=45.10 Aligned_cols=31 Identities=6% Similarity=-0.073 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q 002407 456 NGSIWSIKFSLDGRYLASAGEDCVIHVWQVV 486 (927)
Q Consensus 456 ~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~ 486 (927)
-...+.|+|.|+|+++++-...+.|++++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~ 56 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPE 56 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECC
Confidence 4467899999999977775433467777654
No 309
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.16 E-value=7.2 Score=46.20 Aligned_cols=196 Identities=6% Similarity=-0.033 Sum_probs=117.5
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEE
Q 002407 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVD 644 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~ 644 (927)
..+..|+|.+. +.|+.+. ..+.|+.+++........+. .-.....|++.+..++++++-...+.|.+.++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 45778999874 6665554 57889999988655444443 235677899987456666666667889999987654333
Q ss_pred ec-cCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC
Q 002407 645 WN-DLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA 721 (927)
Q Consensus 645 ~~-~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~ 721 (927)
.. ..-.....+++.|...+|..... .+.|...++......... .......+++++.+....++++-+.
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~---------~~~l~~P~GlalD~~~~~LY~aD~~ 499 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV---------NTSLGWPNGLALDYDEGKIYWGDAK 499 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE---------eCCCCCCeeeEEcccCCEEEEEECC
Confidence 33 23357899999997445554432 356777777654322111 1334567899999877755555566
Q ss_pred CCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEE-ECCCcEEEEECCCC
Q 002407 722 DSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSA-SEDSYVYVWKYEAE 775 (927)
Q Consensus 722 Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasg-s~Dg~I~IWdl~s~ 775 (927)
.+.|..++... ....+.. ........+++..+ +|+.+ ...+.|...+..++
T Consensus 500 ~~~I~~~~~dG~~~~~~~~-~~l~~P~glav~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 500 TDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp TTEEEEEESSSCCCEEEEE-CCCCSSCCEEEETT--EEEEECTTSSCEEEEESSSC
T ss_pred CCEEEEEecCCCceEEEec-cCCCCcEEEEEECC--EEEEeecCCCeEEEEEcCCC
Confidence 78898888432 2222211 11112234444433 44433 34455666666554
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.06 E-value=4.1 Score=44.61 Aligned_cols=204 Identities=11% Similarity=0.082 Sum_probs=107.5
Q ss_pred CCCEEEEEecCCcEEEEEeCCCcEEEEeCCCCc-EEEEEe----cCCceEEEEEccCC---CCEEEEEEC----C----C
Q 002407 567 LDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKT-CLKIFS----HSDYVTCIQFNPVD---DRYFISGSL----D----A 630 (927)
Q Consensus 567 ~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~-~~~~~~----h~~~V~~v~fsp~d---g~~L~sgs~----D----g 630 (927)
-.....|+|.|++.|+.+..++.|++++. .++ .+..+. .......|+|+| + +..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999988888888999999973 444 222111 235688999999 5 344444432 2 5
Q ss_pred cEEEEeCCCC--c-----E-EEecc--CCCcEEEEEECCCCCEEEEEEC-------------CCeEEEEECCCCeeeeec
Q 002407 631 KVRIWSIPER--Q-----V-VDWND--LHEMVTAACYTPDGQGALVGSY-------------KGSCHLYNTSENKLQQKS 687 (927)
Q Consensus 631 ~I~IWDl~t~--~-----~-v~~~~--~~~~V~sla~spdg~~l~tgs~-------------Dg~I~IwDl~~~~~~~~~ 687 (927)
.|..|+.... . . +.... .......++|.|||.++++-+. .|.|.-++.... ....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCC
Confidence 6777776654 1 1 11111 1123467999999986666432 245665555421 10000
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC---cEEEEECCc---------------ceEEEEee-cCCcceEE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS---RIRVVDGID---------------LVHKFKGF-RNTNSQIS 748 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg---~I~VwD~~~---------------~~~~~~~~-~~~~~v~s 748 (927)
... .......-......++|+|+...++++-.... .|.+..... ........ ........
T Consensus 185 pf~-~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 185 PFP-NSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp SST-TCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCC-CCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 000 00000011123568999994332333332221 244433111 00111111 12334667
Q ss_pred EEEe-------cCCCEEEEEECCCcEEEEECCC
Q 002407 749 ASLT-------ANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 749 v~fs-------pdg~~Lasgs~Dg~I~IWdl~s 774 (927)
++|. .+|.++++.-..+.|...+++.
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 7773 5677777766677788888765
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.95 E-value=5.3 Score=43.61 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCeEEEEEcCCC------CcEEEEEECCCcEEEEECCc--ceEEEEee-cCCcceEEEEEecCCCEEEEEE-CCCcEEEE
Q 002407 701 RKITGFQFAPGS------SSEVLVTSADSRIRVVDGID--LVHKFKGF-RNTNSQISASLTANGRYVVSAS-EDSYVYVW 770 (927)
Q Consensus 701 ~~Vtsl~fspdg------~~~Llsgs~Dg~I~VwD~~~--~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs-~Dg~I~IW 770 (927)
..+..++|.... ..++++....+.|...+... ........ .....+..+++.|||.++++.. .+| +||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 457778886421 23555555667777766332 22221111 1234688999999998666543 344 455
Q ss_pred EC
Q 002407 771 KY 772 (927)
Q Consensus 771 dl 772 (927)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.79 E-value=1.3 Score=46.84 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=95.9
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCc---EEEEEe--cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCcEE
Q 002407 579 QHLLSSSMD-----KTVRLWHLSSKT---CLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVV 643 (927)
Q Consensus 579 ~~L~Sgs~D-----gtV~lWDl~t~~---~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~~v 643 (927)
..++.|+.+ ..+.+||+.+.+ ....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 64 ~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 64 RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 445555544 468999998876 443322 11111222222 56777777654 35889998887644
Q ss_pred EeccCC---CcEEEEEECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 644 DWNDLH---EMVTAACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 644 ~~~~~~---~~V~sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
...... ....++.+ +++.++.|+.+ ..+.+||+.+.+......+. ........+.+ + ..+
T Consensus 142 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~-~~i 209 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-------TKRSGAGVALL--N-DHI 209 (301)
T ss_dssp EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--T-TEE
T ss_pred ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-------cccccceEEEE--C-CEE
Confidence 332222 12222222 67777887754 45899999888765442211 11111222223 2 346
Q ss_pred EEEEECC-----CcEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 716 VLVTSAD-----SRIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~D-----g~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
++.|+.+ ..|.+||..+..-..... .....-..++ .-++++++.|+.+ ..|.+||+++.
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE-EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7777654 568899965433222111 1111111222 2367777777755 34677777653
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.79 E-value=0.84 Score=51.28 Aligned_cols=148 Identities=9% Similarity=0.135 Sum_probs=91.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCc---EEEecc--CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee-------
Q 002407 619 DDRYFISGSLDAKVRIWSIPERQ---VVDWND--LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK------- 686 (927)
Q Consensus 619 dg~~L~sgs~Dg~I~IWDl~t~~---~v~~~~--~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~------- 686 (927)
++..++.+- ++.||.-++.... .+.... .-..|..+..+|+|.+|+..+ +..|.|..+..+.....
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 444444443 4667777766332 222221 122678899999999999885 55888888874321111
Q ss_pred ---cccccccccccCCCCCeEEEEEcCCCCc--EEEEEECCCcEEEEECCc----ceEEEE-------eecCCcceEEEE
Q 002407 687 ---SPINLQNKKKRSHQRKITGFQFAPGSSS--EVLVTSADSRIRVVDGID----LVHKFK-------GFRNTNSQISAS 750 (927)
Q Consensus 687 ---~~i~~~~~~~~~h~~~Vtsl~fspdg~~--~Llsgs~Dg~I~VwD~~~----~~~~~~-------~~~~~~~v~sv~ 750 (927)
..+.+... ......+|..+.|+|-+.. .|++-..|+.|++||... .. .+. .......+.+++
T Consensus 109 ~q~~ty~l~~~-~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 109 FQIFHYSIDEE-EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TEEEEEEGGGC-C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred cceeEEEcCCc-ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 00111100 0113578999999996543 899999999999999543 11 121 111225678999
Q ss_pred EecCCCEEEEEE--CCCcEEEE
Q 002407 751 LTANGRYVVSAS--EDSYVYVW 770 (927)
Q Consensus 751 fspdg~~Lasgs--~Dg~I~IW 770 (927)
|..++-.|...+ ..|.||-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 77888754
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.65 E-value=1.2 Score=47.03 Aligned_cols=182 Identities=13% Similarity=0.151 Sum_probs=95.1
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEEEec
Q 002407 579 QHLLSSSMD-----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs~D-----gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v~~~ 646 (927)
..++.|+.+ ..+.+||..+.+....-. ....-.+++.. ++.+++.|+.++ .+.+||+.+.+-....
T Consensus 63 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 445555543 358899998876544432 11111222222 577778887654 4778898887655433
Q ss_pred cCC---CcEEEEEECCCCCEEEEEECC-------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEE
Q 002407 647 DLH---EMVTAACYTPDGQGALVGSYK-------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 647 ~~~---~~V~sla~spdg~~l~tgs~D-------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
... .....+. -+++.++.|+.+ ..+.+||+.+.+......+. ........+.+ ++ .++
T Consensus 141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iy 208 (302)
T 2xn4_A 141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS-------TRRSGAGVGVL--NN-LLY 208 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-EEE
T ss_pred CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc-------cccccccEEEE--CC-EEE
Confidence 222 1222222 256777777543 45899999888765442211 11111122222 23 367
Q ss_pred EEEECC-----CcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 002407 717 LVTSAD-----SRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASEDS-----YVYVWKYEAE 775 (927)
Q Consensus 717 lsgs~D-----g~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s~ 775 (927)
+.|+.+ ..+.+||.....-.... ......-..++ ..++++++.|+.++ .|.+||+.+.
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 777654 46889996543222111 11111111222 23667777777553 3777777654
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.62 E-value=1.2 Score=47.20 Aligned_cols=182 Identities=8% Similarity=0.052 Sum_probs=95.4
Q ss_pred cEEEEEeCC----CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC------CcEEEEeCCCCcEEEec
Q 002407 579 QHLLSSSMD----KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD------AKVRIWSIPERQVVDWN 646 (927)
Q Consensus 579 ~~L~Sgs~D----gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D------g~I~IWDl~t~~~v~~~ 646 (927)
..++.|+.+ ..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-....
T Consensus 57 ~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 445566544 568899998886554432 11111122222 67777887765 45889999887654433
Q ss_pred cCC---CcEEEEEECCCCCEEEEEEC---------CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 647 DLH---EMVTAACYTPDGQGALVGSY---------KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 647 ~~~---~~V~sla~spdg~~l~tgs~---------Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
... .....+. -+++.++.|+. -..+.+||+.+........+. .....-..+.+ ++ .
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~ 202 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-------EARKNHGLVFV--KD-K 202 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-E
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-------chhhcceEEEE--CC-E
Confidence 222 1222222 26677777754 345899999988655442211 11111122222 33 3
Q ss_pred EEEEEECC-----CcEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 715 EVLVTSAD-----SRIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 715 ~Llsgs~D-----g~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
+++.|+.+ ..+.+||.....-..... .....-..++. -++++++.|+.+ ..|.+||+.+.
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 66666543 458888865432221111 11111112222 267777777754 34677777653
No 316
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.45 E-value=12 Score=45.25 Aligned_cols=309 Identities=7% Similarity=0.015 Sum_probs=164.3
Q ss_pred ecCCCCeEEEccCceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeec
Q 002407 417 TDDSQDVSFHGQERVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLE 496 (927)
Q Consensus 417 ~~d~~~~~~~g~~~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~ 496 (927)
..|....+|.|...| +..|+..+..+.... ......|.++.. .+| .|..++.+ -|..++..+.+.. .+..
T Consensus 69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~-----~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~ 138 (758)
T 3ott_A 69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPE-----TDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDT 138 (758)
T ss_dssp EEETTTEEEEEETTE-EEEEETTTTEECCCS-----CCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECH
T ss_pred EEcCCCcEEEEeCCC-eEEEeCCCCEEECcc-----cCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-Eecc
Confidence 345566789888776 678888766554311 112345887765 355 45556555 5778887654322 1111
Q ss_pred ccccCccccEEEEccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEc------cCCCCE
Q 002407 497 KQEDGHLNMLLLANGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQ------GHLDDV 570 (927)
Q Consensus 497 ~~~~~~~~~v~~v~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~------gH~~~V 570 (927)
.........+..+....++.+.+... .+..... ........+. .....|
T Consensus 139 ~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~------------------------~~~~~~~~~~~~~~~~~~~~~i 193 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYI------------------------PSNGKFEGIPLPVHSSQSNLFV 193 (758)
T ss_dssp HHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEE------------------------TTTTEEEEECCCCCTTCSSCCE
T ss_pred CCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCc------------------------cCCCceEEecCCCcccccccee
Confidence 01111223455555555666555432 2211111 1111111110 012347
Q ss_pred EEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-
Q 002407 571 LDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS-HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND- 647 (927)
Q Consensus 571 ~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~- 647 (927)
.+|...++ +.|..|+. +-|..+|..+++...... ....|.+|.... ++.+. .|+. +-|.+++..+++......
T Consensus 194 ~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~ 269 (758)
T 3ott_A 194 NSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLL-AGTD-NGLYVYHNDTTPLQHIIHD 269 (758)
T ss_dssp EEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEE-EEET-TEEEEECCTTSCCEEECCC
T ss_pred EEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEE-EEeC-CceeEEecCCCcEEEEEcC
Confidence 88887765 55666664 468889988775433222 344688888776 66554 4554 458889887766544321
Q ss_pred -------CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 648 -------LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 648 -------~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
....|.++....+|. |.+|+..| +.++.. ..... ..... ..........|.++....++. |.+|+
T Consensus 270 ~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~-~~~~~-~~~~~--~~~~~~~~~~v~~i~~D~~g~--lWiGt 341 (758)
T 3ott_A 270 SRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRY-NSALQ-FIPIS--QITGTGDGNQFYSLFRDSKGF--YWFGG 341 (758)
T ss_dssp TTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECC-CC-CE-EEEHH--HHSCSCCCCBEEEEEECTTCC--EEEEE
T ss_pred CCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-cccccc-CCcee-EEecc--cCCCCCCCceEEEEEEcCCCC--EEEee
Confidence 124688998888775 66676667 544432 22111 11100 000012235688888877774 56666
Q ss_pred CCCcEEEEECCc----ceEEEEee-----cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 721 ADSRIRVVDGID----LVHKFKGF-----RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 721 ~Dg~I~VwD~~~----~~~~~~~~-----~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
.+| +..++... ....+... .....|.++.-..+|++.+ |+. +-|..|+..++
T Consensus 342 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~ 402 (758)
T 3ott_A 342 ANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATR 402 (758)
T ss_dssp TTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTT
T ss_pred CCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCC
Confidence 554 66665332 12222210 1123577888777887655 444 56889988764
No 317
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.13 E-value=12 Score=44.28 Aligned_cols=158 Identities=9% Similarity=-0.002 Sum_probs=95.3
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc-------CCCcEEEEEECCCCCEE-EEEECCCeEEEEECC
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND-------LHEMVTAACYTPDGQGA-LVGSYKGSCHLYNTS 679 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~-------~~~~V~sla~spdg~~l-~tgs~Dg~I~IwDl~ 679 (927)
..+..|+|.+.++.++++=...+.|+.+++.......... .-..+..+++...+..| ++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 3467788888444444444445678888776543322221 22468899999876655 455567889999986
Q ss_pred CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC--cEEEEECCc-ceEEEEeecCCcceEEEEEecCCC
Q 002407 680 ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS--RIRVVDGID-LVHKFKGFRNTNSQISASLTANGR 756 (927)
Q Consensus 680 ~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg--~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~ 756 (927)
... ...+. ........+|++.|....++++-.... .|...+... ....+. .........++++++++
T Consensus 420 G~~-~~~l~--------~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~-~~~l~~P~gla~D~~~~ 489 (628)
T 4a0p_A 420 GRS-VGVVL--------KGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF-FSGLSKPIALALDSRLG 489 (628)
T ss_dssp SCE-EEEEE--------ECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE-CSSCSCEEEEEEETTTT
T ss_pred CCe-EEEEE--------eCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE-eccCCCccEEEEeCCCC
Confidence 543 22211 123456899999996554555543333 566666422 222222 22344568899999877
Q ss_pred EEEEEE-CCCcEEEEECCCC
Q 002407 757 YVVSAS-EDSYVYVWKYEAE 775 (927)
Q Consensus 757 ~Lasgs-~Dg~I~IWdl~s~ 775 (927)
.|+.+. ..+.|...+++..
T Consensus 490 ~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 490 KLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp EEEEEETTTTEEEEEETTSC
T ss_pred EEEEEeCCCCEEEEEeCCCC
Confidence 777665 4577999998654
No 318
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.65 E-value=2.5 Score=45.05 Aligned_cols=160 Identities=8% Similarity=-0.002 Sum_probs=81.4
Q ss_pred EEEEeCCCCcEEEEEecCCce--EEEEEccCCCCEEEEEECC--------CcEEEEeCCCCcEEEeccCCC---cEEEEE
Q 002407 590 VRLWHLSSKTCLKIFSHSDYV--TCIQFNPVDDRYFISGSLD--------AKVRIWSIPERQVVDWNDLHE---MVTAAC 656 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~h~~~V--~~v~fsp~dg~~L~sgs~D--------g~I~IWDl~t~~~v~~~~~~~---~V~sla 656 (927)
+.+||..+.+....-....+- .+++.. ++.+++.|+.+ ..+.+||+.+.+-......+. ....+.
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 778898887654332211111 122222 56777777642 358899998876544332221 122222
Q ss_pred ECCCCCEEEEEEC-C-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCC-----cE
Q 002407 657 YTPDGQGALVGSY-K-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADS-----RI 725 (927)
Q Consensus 657 ~spdg~~l~tgs~-D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg-----~I 725 (927)
-+++.++.|+. + ..+.+||+.+.+......+. .....-.++.+ ++ .+++.|+.++ .+
T Consensus 147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~ 214 (315)
T 4asc_A 147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-------TARSLFGATVH--DG-RIIVAAGVTDTGLTSSA 214 (315)
T ss_dssp --ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEE--TT-EEEEEEEECSSSEEEEE
T ss_pred --ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC-------CchhceEEEEE--CC-EEEEEeccCCCCccceE
Confidence 46677777776 2 46999999987655432211 11111122222 33 4777777654 47
Q ss_pred EEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC
Q 002407 726 RVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED 764 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D 764 (927)
.+||..+..-..... .......+++ .-++++++.|+.+
T Consensus 215 ~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~ 253 (315)
T 4asc_A 215 EVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFA 253 (315)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEE
T ss_pred EEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCcc
Confidence 888865432222211 1111111222 2366777777653
No 319
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.63 E-value=12 Score=42.27 Aligned_cols=231 Identities=8% Similarity=0.113 Sum_probs=143.2
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
...+.+|+..++...+-+ .-. ..|.-=+|-.+ +.|+-.. +..|.-|++........+......-....|...
T Consensus 85 g~~lQiFnle~K~klks~-----~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY 156 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAH-----TMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (494)
T ss_dssp TTEEEEEETTTTEEEEEE-----ECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEE
T ss_pred CCeEEEEchHHhhhhcce-----ecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEE
Confidence 678999998877533222 222 34555556433 3455543 568999999764433333322222223555555
Q ss_pred ccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC----cEEEEEe
Q 002407 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS----QHLLSSS 585 (927)
Q Consensus 510 ~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd----~~L~Sgs 585 (927)
..+++.+.++..+-.. ....+...-.+|....+.-+.+.||.+....+....+ ..++.+.
T Consensus 157 ~~d~~~kW~~l~GI~~----------------~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~ 220 (494)
T 1bpo_A 157 RTDAKQKWLLLTGISA----------------QQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (494)
T ss_dssp EECTTSSEEEEEEEEE----------------ETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEE
T ss_pred EECCCCCeEEEEeecc----------------cCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEE
Confidence 5666655544332100 0001112236788888889999999887766666432 3344444
Q ss_pred CC---CcEEEEeCCCC---------cEEEEE-e---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 586 MD---KTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 586 ~D---gtV~lWDl~t~---------~~~~~~-~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
.. +.++|-++... +.+..+ . ..+...++..++ ....++.-..-|.|++||+.++.++......
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 43 78999998643 111111 1 245667889998 6778888889999999999999998755544
Q ss_pred -CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 650 -EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+.|...+.......++.....|.|.--.++...++.
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 566666666666677777789988888777665543
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.35 E-value=10 Score=41.22 Aligned_cols=95 Identities=8% Similarity=-0.007 Sum_probs=57.4
Q ss_pred eCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEcc--------CCCCEEEEEECCCcEEEEeCCCCcEEEeccCCCc
Q 002407 585 SMDKTVRLWHLSSKTCLKIFS-----HSDYVTCIQFNP--------VDDRYFISGSLDAKVRIWSIPERQVVDWNDLHEM 651 (927)
Q Consensus 585 s~DgtV~lWDl~t~~~~~~~~-----h~~~V~~v~fsp--------~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~~~ 651 (927)
..||.|..++..+|.....+. ...++.. .-.| ..+..+++|+.+|.+...|+.+|+++..+.....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCC
Confidence 578999999988886555444 2222221 1000 0356788999999999999999999876654421
Q ss_pred E--------EEEEEC-----CCCCEEEEEECCCeEEEEECCCC
Q 002407 652 V--------TAACYT-----PDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 652 V--------~sla~s-----pdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
. .|.... ..+..|+.+..+..+.+.+ +++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTS
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCC
Confidence 1 111111 1245677777777777766 344
No 321
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.24 E-value=17 Score=43.03 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=121.8
Q ss_pred CCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEECCCcEEEEeCC
Q 002407 568 DDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP 638 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~ 638 (927)
..+..|+|.+. +.|+-+. ..+.|+.+++........+.. ...+..|++....++++++-+..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 45788999875 6665554 467788888875543333321 24678999998445566676777889999986
Q ss_pred CCcEEEec-cCCCcEEEEEECC-CCCEEEEEECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWN-DLHEMVTAACYTP-DGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~-~~~~~V~sla~sp-dg~~l~tgs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
........ ..-.....|++.| .|.++++-.... .|...++......... .......+.+++.+....
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~---------~~~l~~P~gla~D~~~~~ 490 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF---------FSGLSKPIALALDSRLGK 490 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE---------CSSCSCEEEEEEETTTTE
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE---------eccCCCccEEEEeCCCCE
Confidence 54332222 2335789999999 565555543333 5777777644332221 123456789999998775
Q ss_pred EEEEEECCCcEEEEECCc-ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCC
Q 002407 715 EVLVTSADSRIRVVDGID-LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESR 777 (927)
Q Consensus 715 ~Llsgs~Dg~I~VwD~~~-~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~ 777 (927)
++++-+..+.|..++... ....+.. ........+++.. +.++++=.....|...+..++..
T Consensus 491 LYw~D~~~~~I~~~~~dG~~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~ 552 (628)
T 4a0p_A 491 LFWADSDLRRIESSDLSGANRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREG 552 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEEeCCCCEEEEEeCCCCceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCC
Confidence 555556678899998532 2233321 2233456676654 44444444566677777766543
No 322
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.02 E-value=12 Score=40.79 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.0
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcC
Q 002407 453 QAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVES 488 (927)
Q Consensus 453 ~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~ 488 (927)
...-...+.|+|.|||++|++--..|.|++++...+
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 334456889999999998777655888988875433
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.00 E-value=3 Score=44.26 Aligned_cols=171 Identities=12% Similarity=0.089 Sum_probs=89.0
Q ss_pred CcEEEEeCCCCcEEEEEe--cC-CceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCcEEEeccCC---CcEEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HS-DYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQVVDWNDLH---EMVTAAC 656 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~-~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~~v~~~~~~---~~V~sla 656 (927)
..+.+||+.+.+....-. .. .....+.+ ++++++.|+.+ ..+.+||+.+.+-....... .....+.
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 166 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV 166 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence 468889988876544322 11 11122222 56777777643 35889999887655433222 1222233
Q ss_pred ECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----CcEE
Q 002407 657 YTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SRIR 726 (927)
Q Consensus 657 ~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g~I~ 726 (927)
+ +++.++.|+.+ ..+.+||+.+.+......+. ........+.+ + ..+++.|+.+ ..+.
T Consensus 167 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~ 234 (308)
T 1zgk_A 167 L--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN-------TIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVE 234 (308)
T ss_dssp E--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEE
T ss_pred E--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC-------CccccceEEEE--C-CEEEEEeCCCCCCccceEE
Confidence 3 67777777654 45899999887755432211 11111222333 3 3367777654 5688
Q ss_pred EEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCC-----cEEEEECCC
Q 002407 727 VVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDS-----YVYVWKYEA 774 (927)
Q Consensus 727 VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s 774 (927)
+||.....-..... .....-.+++. -++++++.|+.++ .|.+||+.+
T Consensus 235 ~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 235 RYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 99965433222111 11111112222 2566777776443 356666654
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.74 E-value=13 Score=40.32 Aligned_cols=202 Identities=10% Similarity=0.139 Sum_probs=121.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCC-CcEEEEEe-c----CCceEEEEEccCCCCEEEEEEC-------CCcEEEE
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-H----SDYVTCIQFNPVDDRYFISGSL-------DAKVRIW 635 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h----~~~V~~v~fsp~dg~~L~sgs~-------Dg~I~IW 635 (927)
+|..=.|-....|+-.+ +..|+-|++.. ..+.+.|. | ...|..-..++ +.++++..+. .|.+.+|
T Consensus 108 ~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLY 185 (365)
T 2xzh_A 108 DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLY 185 (365)
T ss_dssp CEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEE
T ss_pred ccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECC-CCCEEEEEeEeccCCccceeEEEE
Confidence 44445565555444443 35799999874 46777776 2 34566777777 7776655432 3678899
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCC-----CEEEEEEC---CCeEEEEECCCC---e-eeeecccccccccccCCCCCe
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDG-----QGALVGSY---KGSCHLYNTSEN---K-LQQKSPINLQNKKKRSHQRKI 703 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg-----~~l~tgs~---Dg~I~IwDl~~~---~-~~~~~~i~~~~~~~~~h~~~V 703 (927)
..+.+......+|-.... .+-.+| +.|+.+.. .+.++|.++... . ...+....+.... .....-.
T Consensus 186 S~er~~sQ~ieGhaa~F~--~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fpp-ea~~DFP 262 (365)
T 2xzh_A 186 SVDRKVSQPIEGHAASFA--QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP-EAQNDFP 262 (365)
T ss_dssp ETTTTEEEEECCSEEEEE--EECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCT-TCTTCCE
T ss_pred eecccccceeeeeeeeeE--EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCc-cccCCce
Confidence 987665443333322221 222222 13333322 258999988442 1 1101011111000 1234445
Q ss_pred EEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 704 TGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 704 tsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
.+++.++.-. ++..-+.-|.|++||..+....+...-....|...+......=++.....|.|.--.++...
T Consensus 263 Vamqvs~kyg-viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 263 VAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred EEEEecccCC-EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 6777877655 78888999999999999888888887777777766666555556677788888887777654
No 325
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.69 E-value=2.8 Score=44.06 Aligned_cols=173 Identities=11% Similarity=0.061 Sum_probs=91.1
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC-----CcEEEEeCCCCc---EEEeccCC---CcEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-----AKVRIWSIPERQ---VVDWNDLH---EMVTA 654 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-----g~I~IWDl~t~~---~v~~~~~~---~~V~s 654 (927)
..+.+||+.+.+....-. ....-.+++. . ++.+++.|+.+ ..+.+||+.+.+ -....... .....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 468889988876543322 1111122222 2 57777777755 358999998876 44332222 12222
Q ss_pred EEECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----Cc
Q 002407 655 ACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----SR 724 (927)
Q Consensus 655 la~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g~ 724 (927)
+.+ +++.++.|+.+ ..+.+||+.+.+........ .....-..+.+ ++ .+++.|+.+ ..
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~ 176 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ-------TAREGAGLVVA--SG-VIYCLGGYDGLNILNS 176 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS-------SCCBSCEEEEE--TT-EEEEECCBCSSCBCCC
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC-------CCcccceEEEE--CC-EEEEECCCCCCcccce
Confidence 222 67777777654 36899999887755432211 11111122222 33 366776654 45
Q ss_pred EEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 725 IRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 725 I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
+.+||.....-..... .....-.+++ .-++++++.|+.+ ..|.+||+.+.
T Consensus 177 ~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 177 VEKYDPHTGHWTNVTPMATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEeCCCCcEEeCCCCCcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 8889965433222211 1111111222 2366777777754 35888888764
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.52 E-value=3.9 Score=43.06 Aligned_cols=173 Identities=15% Similarity=0.197 Sum_probs=90.0
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC-----cEEEEeCCCCcEEEeccCC---CcEEEEEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA-----KVRIWSIPERQVVDWNDLH---EMVTAACY 657 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg-----~I~IWDl~t~~~v~~~~~~---~~V~sla~ 657 (927)
..+.+||+.+.+....-. ....-.+++.. ++.+++.|+.++ .+.+||..+.+-....... .....+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 357888888776443322 11111122222 567777777543 5889999887655433322 12222222
Q ss_pred CCCCCEEEEEECCC-----eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-------CcE
Q 002407 658 TPDGQGALVGSYKG-----SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-------SRI 725 (927)
Q Consensus 658 spdg~~l~tgs~Dg-----~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-------g~I 725 (927)
+++.++.|+.++ .+.+||+.+.+......+. ........+.+ ++ .+++.|+.+ ..+
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~ 175 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN-------TRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTV 175 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-EEEEECCEETTTTEECCCE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCC-------CcccCceEEEE--CC-EEEEEeCCCCCCCccccEE
Confidence 677788887653 5889999887765443221 11111122222 23 366666542 458
Q ss_pred EEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 002407 726 RVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASEDS-----YVYVWKYEAE 775 (927)
Q Consensus 726 ~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s~ 775 (927)
.+||.....-..... .....-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 176 ~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 176 ECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 889865433222111 1111111222 23677777776543 5778887664
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=92.24 E-value=3.4 Score=43.60 Aligned_cols=179 Identities=8% Similarity=0.082 Sum_probs=95.0
Q ss_pred EEEEeC--CCcEEEEeCCCCcEEEEEe--c-CCceEEEEEccCCCCEEEEEECC----CcEEEEeCCCCcEEEeccCC--
Q 002407 581 LLSSSM--DKTVRLWHLSSKTCLKIFS--H-SDYVTCIQFNPVDDRYFISGSLD----AKVRIWSIPERQVVDWNDLH-- 649 (927)
Q Consensus 581 L~Sgs~--DgtV~lWDl~t~~~~~~~~--h-~~~V~~v~fsp~dg~~L~sgs~D----g~I~IWDl~t~~~v~~~~~~-- 649 (927)
++.|+. ...+.+||..+++....-. . ......+.+ ++.+++.|+.+ ..+.+||+.+.+-.......
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 445544 3578899998876544322 1 111122222 66777787755 56889999887654433222
Q ss_pred -CcEEEEEECCCCCEEEEEECC------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC-
Q 002407 650 -EMVTAACYTPDGQGALVGSYK------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA- 721 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~D------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~- 721 (927)
.....+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+++.|+.
T Consensus 92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~ 159 (306)
T 3ii7_A 92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-------TQRCSHGMVEA--NG-LIYVCGGSL 159 (306)
T ss_dssp CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-------SCCBSCEEEEE--TT-EEEEECCEE
T ss_pred ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-------CCcceeEEEEE--CC-EEEEECCCC
Confidence 12222222 67777887765 45999999988755442211 11111122222 33 36666653
Q ss_pred --------CCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 722 --------DSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 722 --------Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
-..+.+||.....-.... ......-.+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 345888986543322211 111111112222 266777777643 35788888764
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=91.78 E-value=5.1 Score=42.58 Aligned_cols=95 Identities=12% Similarity=0.110 Sum_probs=53.7
Q ss_pred EEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECC-------CcEEEEeCCCCcEEEeccCCCcE-EEEEECC
Q 002407 590 VRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLD-------AKVRIWSIPERQVVDWNDLHEMV-TAACYTP 659 (927)
Q Consensus 590 V~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~D-------g~I~IWDl~t~~~v~~~~~~~~V-~sla~sp 659 (927)
+.+||..+.+....-. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-......+... ...+...
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 7788888776544322 11111222222 56777777764 24788898887655443332211 1111124
Q ss_pred CCCEEEEEEC------CCeEEEEECCCCeeeee
Q 002407 660 DGQGALVGSY------KGSCHLYNTSENKLQQK 686 (927)
Q Consensus 660 dg~~l~tgs~------Dg~I~IwDl~~~~~~~~ 686 (927)
+++.++.|+. -..+.+||+.+.+....
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~ 190 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL 190 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC
Confidence 6777777764 24599999998875544
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.70 E-value=2.6 Score=48.01 Aligned_cols=108 Identities=10% Similarity=0.151 Sum_probs=60.9
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc---------CCCcEEEEEECCC---CCEEEEEEC------
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND---------LHEMVTAACYTPD---GQGALVGSY------ 669 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~---------~~~~V~sla~spd---g~~l~tgs~------ 669 (927)
...+.|+|.| +++++++-...+.|++++..+++...... ....+..|+|+|+ +.+|.+...
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 88877665433478888866554432211 2456789999995 555555442
Q ss_pred -------CCeEEEEECCCC--eeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 670 -------KGSCHLYNTSEN--KLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 670 -------Dg~I~IwDl~~~--~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
...|.-|++... .+.....+ +.... .........|+|.|+|. ++++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i-~~~~p-~~~~H~~~~l~f~pDG~-Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDL-LAGLP-SSKDHQSGRLVIGPDQK-IYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEE-EEEEC-CCSSCCEEEEEECTTSC-EEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEE-EEcCC-CCCCCCCCeEeECCCCe-EEEEE
Confidence 235666665432 22111111 00000 12234578999999996 44443
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=91.55 E-value=14 Score=40.28 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=42.2
Q ss_pred EecCCceEEEEEcc------CCCCEEEEEECCCcEEEEeCCCCcEEE---ec-cCCCcEEEEEECCCCCEEEEE
Q 002407 604 FSHSDYVTCIQFNP------VDDRYFISGSLDAKVRIWSIPERQVVD---WN-DLHEMVTAACYTPDGQGALVG 667 (927)
Q Consensus 604 ~~h~~~V~~v~fsp------~dg~~L~sgs~Dg~I~IWDl~t~~~v~---~~-~~~~~V~sla~spdg~~l~tg 667 (927)
+.+...+..++|.. ..+.+|++....+.|...++..++.+. ++ .....+..+++.|||.++++.
T Consensus 267 ~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 267 WKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp ESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 33445677888863 146677776667778888877655432 22 223579999999999866654
No 331
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=91.54 E-value=4.2 Score=45.66 Aligned_cols=139 Identities=9% Similarity=0.114 Sum_probs=90.0
Q ss_pred CCCcEEEEeCCCCcEEEEEecC----C-ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCc------------EEEecc-
Q 002407 586 MDKTVRLWHLSSKTCLKIFSHS----D-YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQ------------VVDWND- 647 (927)
Q Consensus 586 ~DgtV~lWDl~t~~~~~~~~h~----~-~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~------------~v~~~~- 647 (927)
.++.||.-++......+.+... . .|..+..+| +|++|+..+ +..|.|-.++.+. ....+.
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l 116 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSI 116 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEc
Confidence 3478888888755445555433 2 588899999 999888875 4689998887321 011111
Q ss_pred ------CCCcEEEEEECCC---CCEEEEEECCCeEEEEECCCCeeeeeccccccc--ccccCCCCCeEEEEEcCCCCcEE
Q 002407 648 ------LHEMVTAACYTPD---GQGALVGSYKGSCHLYNTSENKLQQKSPINLQN--KKKRSHQRKITGFQFAPGSSSEV 716 (927)
Q Consensus 648 ------~~~~V~sla~spd---g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~--~~~~~h~~~Vtsl~fspdg~~~L 716 (927)
....|..+.|+|- +..|++-..|+.|++||+........ .+.... .........|.+++|.+++- .|
T Consensus 117 ~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l-TL 194 (452)
T 3pbp_A 117 DEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL-TL 194 (452)
T ss_dssp GGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS-CE
T ss_pred CCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc-EE
Confidence 2467999999994 56899999999999999986321111 111000 00112336789999999654 45
Q ss_pred EEEE--CCCcEEEE
Q 002407 717 LVTS--ADSRIRVV 728 (927)
Q Consensus 717 lsgs--~Dg~I~Vw 728 (927)
.+.+ ..|.|+-.
T Consensus 195 Yvl~~t~~GDIYAl 208 (452)
T 3pbp_A 195 YCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EEEecCCCCCEEEE
Confidence 5544 77888764
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.52 E-value=0.47 Score=48.57 Aligned_cols=101 Identities=13% Similarity=0.099 Sum_probs=66.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcE------EEEEec--CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTC------LKIFSH--SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER 640 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~------~~~~~h--~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~ 640 (927)
.+.+++|+|++.|... .++.++-.+..+.+. -..+.. -....++.|.| ++.+.++ .||.|.-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999888777 778777777655221 122210 01157899999 8877766 5699988876543
Q ss_pred cEEEecc--------CCCcEEEEEECCCCCEEEEEECCCeEEE
Q 002407 641 QVVDWND--------LHEMVTAACYTPDGQGALVGSYKGSCHL 675 (927)
Q Consensus 641 ~~v~~~~--------~~~~V~sla~spdg~~l~tgs~Dg~I~I 675 (927)
....+.. .=..+..|.+.|+|.+.++. ++.++-
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 2212111 11467999999999877777 777543
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=91.32 E-value=9.1 Score=40.47 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=93.7
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEe--cC-CceEEEEEccCCCCEEEEEEC----C-------CcEEEEeCCCCcEEEec
Q 002407 581 LLSSSMDKTVRLWHLSSKTCLKIFS--HS-DYVTCIQFNPVDDRYFISGSL----D-------AKVRIWSIPERQVVDWN 646 (927)
Q Consensus 581 L~Sgs~DgtV~lWDl~t~~~~~~~~--h~-~~V~~v~fsp~dg~~L~sgs~----D-------g~I~IWDl~t~~~v~~~ 646 (927)
++.|+ ..+.+||..+++-.. .. .. .......... ++.+++.|+. + ..+.+||..+.+-....
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 44555 578999999887543 22 11 1222222233 6788888874 1 12778898887655433
Q ss_pred cCCCc---EEEEEECCCCCEEEEEECC--------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 647 DLHEM---VTAACYTPDGQGALVGSYK--------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 647 ~~~~~---V~sla~spdg~~l~tgs~D--------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
..... ...+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+. . ++ .+
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-------~~r~~~~~~~-~-~~-~i 151 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-------YVVYGHTVLS-H-MD-LV 151 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-------SCCBSCEEEE-E-TT-EE
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-------CcccceeEEE-E-CC-EE
Confidence 32221 122222 56777777642 45999999988654432211 1111112222 2 23 36
Q ss_pred EEEEEC-C-----CcEEEEECCcceEEEEeecC-CcceEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 002407 716 VLVTSA-D-----SRIRVVDGIDLVHKFKGFRN-TNSQISASLTANGRYVVSASEDS-----YVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~-D-----g~I~VwD~~~~~~~~~~~~~-~~~v~sv~fspdg~~Lasgs~Dg-----~I~IWdl~s~ 775 (927)
++.|+. + ..+.+||..+..-....... .....+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEECCCC
Confidence 677765 2 46888986543322211111 11111222 23677777777654 4778888764
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.97 E-value=6.6 Score=50.53 Aligned_cols=228 Identities=14% Similarity=0.173 Sum_probs=127.0
Q ss_pred cCCcEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-cEEEeccCC-----
Q 002407 576 SKSQHLLSSSMDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-QVVDWNDLH----- 649 (927)
Q Consensus 576 spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-~~v~~~~~~----- 649 (927)
+|...+++--...++.|||+++.+.++.+.....|.-=.|-. .+.|+..+ +..|..|++... .++..+..+
T Consensus 74 nP~~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred CCCcceEEEecCCeEEEeehHHhhhhcccccCCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhccc
Confidence 454334433347899999999999999888777777777763 44454443 467999999642 333333322
Q ss_pred CcEEEEEECCCCCEEEEEE-------CCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEc--CCCCcEEEEEE
Q 002407 650 EMVTAACYTPDGQGALVGS-------YKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFA--PGSSSEVLVTS 720 (927)
Q Consensus 650 ~~V~sla~spdg~~l~tgs-------~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fs--pdg~~~Llsgs 720 (927)
..|..-..+++.++++..+ ..|.+.+|....+..... .+|......+.+. +....++..+.
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~i----------egha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhh----------hHhHhhhheeccCCCCCCceEEEEEE
Confidence 4677777788999877643 357888998876543221 1333222222221 11111111111
Q ss_pred ---CCCcEEEEECCcc---eEEEE-----e-e---cCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccc--
Q 002407 721 ---ADSRIRVVDGIDL---VHKFK-----G-F---RNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKS-- 783 (927)
Q Consensus 721 ---~Dg~I~VwD~~~~---~~~~~-----~-~---~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~-- 783 (927)
..++++|.+.... ...+. . + .......++..++.-..+..-+.-|.|++||+.++...-..+-
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~ 300 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccC
Confidence 1267888774321 01110 0 0 0112234567777777888889999999999999876533321
Q ss_pred cceeeeeeeecCCCeEEEEecCCceeEEeecCCc
Q 002407 784 ITVTHSYEHFHCQDVSVAIPWPGVGDTWGLQDTY 817 (927)
Q Consensus 784 ~~~~~~~~~~~~~~v~vavs~~g~~~i~~~~d~~ 817 (927)
-+..... .....+..+++.-.|.+....+....
T Consensus 301 ~~iF~~~-~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 301 ETIFVTA-PHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred CceEEec-cCCCCCceEEEcCCceEEEEEEccch
Confidence 1111111 11223445566666666555554443
No 335
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.55 E-value=5.6 Score=42.06 Aligned_cols=173 Identities=12% Similarity=0.068 Sum_probs=90.0
Q ss_pred CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEEC----C-----CcEEEEeCCCCcEEEeccCC---CcEE
Q 002407 588 KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSL----D-----AKVRIWSIPERQVVDWNDLH---EMVT 653 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~----D-----g~I~IWDl~t~~~v~~~~~~---~~V~ 653 (927)
..+.+||..+.+....-. ....-.+++.. ++.+++.|+. + ..+.+||+.+.+-....... ....
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 116 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccE
Confidence 357888888776544321 11111122222 5667777765 2 45889999887655433222 1222
Q ss_pred EEEECCCCCEEEEEECC-----CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC-----C
Q 002407 654 AACYTPDGQGALVGSYK-----GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD-----S 723 (927)
Q Consensus 654 sla~spdg~~l~tgs~D-----g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D-----g 723 (927)
.+.+ +++.++.|+.+ ..+.+||+.+.+......+. .....-..+.+ ++ .+++.|+.+ .
T Consensus 117 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-------~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~ 184 (308)
T 1zgk_A 117 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML-------TRRIGVGVAVL--NR-LLYAVGGFDGTNRLN 184 (308)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS-------SCCBSCEEEEE--TT-EEEEECCBCSSCBCC
T ss_pred EEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC-------ccccceEEEEE--CC-EEEEEeCCCCCCcCc
Confidence 2333 67777777643 46889999887765443221 11111222223 33 366776654 4
Q ss_pred cEEEEECCcceEEEEee-cCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 002407 724 RIRVVDGIDLVHKFKGF-RNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAE 775 (927)
Q Consensus 724 ~I~VwD~~~~~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~ 775 (927)
.+.+||.....-..... .......+++. -++++++.|+.+ ..+.+||+.+.
T Consensus 185 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 185 SAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 58888865433222111 11111112222 267777777654 45888888764
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=89.66 E-value=18 Score=38.24 Aligned_cols=174 Identities=10% Similarity=0.101 Sum_probs=89.1
Q ss_pred cEEEEeCCCCcEEEEE-ec-CCceEEEEEccCCCCEEEEEEC----CC-------cEEEEeCCCCcEEEeccCCC---cE
Q 002407 589 TVRLWHLSSKTCLKIF-SH-SDYVTCIQFNPVDDRYFISGSL----DA-------KVRIWSIPERQVVDWNDLHE---MV 652 (927)
Q Consensus 589 tV~lWDl~t~~~~~~~-~h-~~~V~~v~fsp~dg~~L~sgs~----Dg-------~I~IWDl~t~~~v~~~~~~~---~V 652 (927)
.+.+||..+++....- .. ........... ++.+++.|+. ++ .+.+||..+.+-........ ..
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3788999888755421 11 11122222233 6778888873 12 17788988876554432221 22
Q ss_pred EEEEECCCCCEEEEEECC-------CeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEEC----
Q 002407 653 TAACYTPDGQGALVGSYK-------GSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSA---- 721 (927)
Q Consensus 653 ~sla~spdg~~l~tgs~D-------g~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~---- 721 (927)
..+.+ +++.++.|+.+ ..+.+||+.+.+......+... ...| +++. .++ .+++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~-----~~~~-~~~-~iyv~GG~~~~~ 171 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK---VYGH-----NVIS-HNG-MIYCLGGKTDDK 171 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSC---EESC-----EEEE-ETT-EEEEECCEESSS
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCc---cccc-----EEEE-ECC-EEEEEcCCCCCC
Confidence 22222 67777777754 3588999988776544322110 1111 1222 233 36666653
Q ss_pred --CCcEEEEECCcceEEEEe-ecCCcceEEEEEecCCCEEEEEECC-----CcEEEEECCCCC
Q 002407 722 --DSRIRVVDGIDLVHKFKG-FRNTNSQISASLTANGRYVVSASED-----SYVYVWKYEAES 776 (927)
Q Consensus 722 --Dg~I~VwD~~~~~~~~~~-~~~~~~v~sv~fspdg~~Lasgs~D-----g~I~IWdl~s~~ 776 (927)
-..+.+||.....-.... ........+++. -++++++.|+.+ ..+.+||+.+..
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 245889996543322211 111111112222 366777777643 347788887653
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.63 E-value=0.68 Score=50.70 Aligned_cols=112 Identities=8% Similarity=-0.033 Sum_probs=73.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEc--cCCCCEEEEE-ECCCcEEEEeCCCCcEEEeccCCC--
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKTCLKIFSHS--DYVTCIQFN--PVDDRYFISG-SLDAKVRIWSIPERQVVDWNDLHE-- 650 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~~~~~~~h~--~~V~~v~fs--p~dg~~L~sg-s~Dg~I~IWDl~t~~~v~~~~~~~-- 650 (927)
++.++.++.||.|.-+|..+|+.+..+... .++....-. +.++..++.. ..||.|..++..++..........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 367999999999999999999999988744 233221110 1122333333 589999999998875442222111
Q ss_pred ---cEEE---EEE-C----CCCCEEEEEECCCeEEEEECCCCeeeeeccc
Q 002407 651 ---MVTA---ACY-T----PDGQGALVGSYKGSCHLYNTSENKLQQKSPI 689 (927)
Q Consensus 651 ---~V~s---la~-s----pdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i 689 (927)
++.. ..+ . ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1110 000 0 1455789999999999999999999888654
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.32 E-value=19 Score=39.36 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=66.3
Q ss_pred ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCC---CCcEEEEEE--
Q 002407 646 NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPG---SSSEVLVTS-- 720 (927)
Q Consensus 646 ~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspd---g~~~Llsgs-- 720 (927)
...-...+.|+|.|+|.++++--..|.|++++..+++......+. ............|+|+|+ +..++++-+
T Consensus 28 a~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~---~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 28 ATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVP---GVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECT---TCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred ecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccC---ceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 334467889999999987666655899999987665542211110 011234567899999995 332333322
Q ss_pred CCCcEEEEECCc----------ceEEEEeec--CCcceEEEEEecCCCEEEEEEC
Q 002407 721 ADSRIRVVDGID----------LVHKFKGFR--NTNSQISASLTANGRYVVSASE 763 (927)
Q Consensus 721 ~Dg~I~VwD~~~----------~~~~~~~~~--~~~~v~sv~fspdg~~Lasgs~ 763 (927)
.++.|.-|.... ....+.... .......+.|.|||.+.++.+.
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 344555554211 222333221 1223456899999988777653
No 339
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.08 E-value=4.6 Score=43.62 Aligned_cols=94 Identities=10% Similarity=0.116 Sum_probs=51.4
Q ss_pred CcEEEEeCCCCcEEEEEecC-C-c-eEEEEEccCCCCEEEEEECC-----------------------------------
Q 002407 588 KTVRLWHLSSKTCLKIFSHS-D-Y-VTCIQFNPVDDRYFISGSLD----------------------------------- 629 (927)
Q Consensus 588 gtV~lWDl~t~~~~~~~~h~-~-~-V~~v~fsp~dg~~L~sgs~D----------------------------------- 629 (927)
..+.+||+.+.+-...-... . . -.+++. . ++++++.|+.+
T Consensus 86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-H-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163 (357)
T ss_dssp CCEEEEETTTTEEEECSCCCSSCCSSEEEEE-E-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred ccEEEEeCCCCcEEECCCCCCcccccceEEE-E-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence 46889999887654432211 1 1 112222 3 77888888765
Q ss_pred ----CcEEEEeCCCCcEEEeccCC--CcE-EEEEECCCCCEEEEEEC------CCeEEEEEC--CCCeee
Q 002407 630 ----AKVRIWSIPERQVVDWNDLH--EMV-TAACYTPDGQGALVGSY------KGSCHLYNT--SENKLQ 684 (927)
Q Consensus 630 ----g~I~IWDl~t~~~v~~~~~~--~~V-~sla~spdg~~l~tgs~------Dg~I~IwDl--~~~~~~ 684 (927)
..+.+||+.+.+-....... ... .+++. -++++++.|+. ...+.+||+ .+....
T Consensus 164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~ 232 (357)
T 2uvk_A 164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN 232 (357)
T ss_dssp GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence 46889999887644332222 111 22222 25667777654 345777887 544433
No 340
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.13 E-value=24 Score=38.55 Aligned_cols=159 Identities=8% Similarity=-0.056 Sum_probs=79.0
Q ss_pred CCEEEEEecC--CcEEEEEeCCC----cEEEEeCCCCcEEEEEe---------------cCCceEEEEEccCC-CCEEEE
Q 002407 568 DDVLDLSWSK--SQHLLSSSMDK----TVRLWHLSSKTCLKIFS---------------HSDYVTCIQFNPVD-DRYFIS 625 (927)
Q Consensus 568 ~~V~~l~~sp--d~~L~Sgs~Dg----tV~lWDl~t~~~~~~~~---------------h~~~V~~v~fsp~d-g~~L~s 625 (927)
..|.+|++.| .+.|..+...+ .|...+ ..++.-..+. ....|.+|++.|.+ ...|.+
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4588899988 46666666555 444332 2222212111 11257789998744 556666
Q ss_pred EECCCcEEEEeCCCCcEEEecc-------------------CCCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeee
Q 002407 626 GSLDAKVRIWSIPERQVVDWND-------------------LHEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~~-------------------~~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+...+.|...+-....-..... ....+.+|.+.|. ...|+++...+.|...+- .++...
T Consensus 134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~ 212 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWK 212 (394)
T ss_dssp EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCE
T ss_pred EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCce
Confidence 6666666554322222122110 1235789999883 445666655555544432 222222
Q ss_pred eccccccccccc----CCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 686 KSPINLQNKKKR----SHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 686 ~~~i~~~~~~~~----~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
............ .....+.++++.|.....|+++...+ |...+
T Consensus 213 ~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~ 259 (394)
T 3b7f_A 213 PLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD 259 (394)
T ss_dssp ECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred ECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence 111000000000 00235889999997545677776555 44443
No 341
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=87.58 E-value=42 Score=37.86 Aligned_cols=223 Identities=10% Similarity=0.117 Sum_probs=136.5
Q ss_pred eEeecCCCceEEEccCCCCEEEEEecCCcEEEEEeCCCcEEEEeCCC-CcEEEEEe-c----CCceEEEEEccCCCCEEE
Q 002407 551 TVFALSDKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHLSS-KTCLKIFS-H----SDYVTCIQFNPVDDRYFI 624 (927)
Q Consensus 551 ~v~~~s~k~i~~l~gH~~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t-~~~~~~~~-h----~~~V~~v~fsp~dg~~L~ 624 (927)
.+|++..+....-.....+|..=.|-....|+-.+ +..|+-|++.. ..+++.|. | ...|..-..++ +.++++
T Consensus 89 QiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~-~~kW~~ 166 (494)
T 1bpo_A 89 QIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDA-KQKWLL 166 (494)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECT-TSSEEE
T ss_pred EEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECC-CCCeEE
Confidence 45666554433333334567666776665554443 46899999974 46777776 2 34677777788 777766
Q ss_pred EEEC-------CCcEEEEeCCCCcEEEeccCCCcEEEEEECCC---CCEEEEEECC---CeEEEEECCCC---e-eeeec
Q 002407 625 SGSL-------DAKVRIWSIPERQVVDWNDLHEMVTAACYTPD---GQGALVGSYK---GSCHLYNTSEN---K-LQQKS 687 (927)
Q Consensus 625 sgs~-------Dg~I~IWDl~t~~~v~~~~~~~~V~sla~spd---g~~l~tgs~D---g~I~IwDl~~~---~-~~~~~ 687 (927)
..+. .|.+.+|..+.+......+|-.....+.+.-+ .+.++.+... +.++|.++... . .....
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk 246 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK 246 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred EEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence 4432 46788999877655444443332222222111 1233333332 78999998543 1 11010
Q ss_pred ccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 688 PINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 688 ~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
...+.... .....-..++..++.-. ++..-+.-|.|++||..+....+...-....|...+......=++.....|.|
T Consensus 247 ~vdv~fpp-e~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 247 AVDVFFPP-EAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp EEECCCCT-TSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred eeeeeCCc-ccccCceeEEEecccCC-EEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 11111100 12344456788888665 78889999999999999888888887777777776766666667777789988
Q ss_pred EEEECCCCCC
Q 002407 768 YVWKYEAESR 777 (927)
Q Consensus 768 ~IWdl~s~~~ 777 (927)
.--.++....
T Consensus 325 l~v~v~e~~i 334 (494)
T 1bpo_A 325 LSVCVEEENI 334 (494)
T ss_dssp EEEEECTTTH
T ss_pred EEEEEccccc
Confidence 8888876543
No 342
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=86.16 E-value=19 Score=38.87 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=88.2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCc-----EEE--EEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCC--CCc-------
Q 002407 578 SQHLLSSSMDKTVRLWHLSSKT-----CLK--IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIP--ERQ------- 641 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~~-----~~~--~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~--t~~------- 641 (927)
+..+++.+..|.|+--.+..-. -+. .+...+.+..+.... ....|+..+..|.+..+... .-.
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 4789999999999988765321 122 122345566555555 55678888889998888766 211
Q ss_pred EEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEE
Q 002407 642 VVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVT 719 (927)
Q Consensus 642 ~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsg 719 (927)
=+.. +...+.|.++...+++.++++.+..|.++.-.+........-.......+.......+..+....+.. .++..
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~-~i~l~ 266 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDS-ELYAV 266 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCc-cEEEE
Confidence 1122 23345677777777777999999999999887654332211000000001112133455544443333 57777
Q ss_pred ECCCcEEEEE
Q 002407 720 SADSRIRVVD 729 (927)
Q Consensus 720 s~Dg~I~VwD 729 (927)
+.+|.+..++
T Consensus 267 T~~G~~ir~~ 276 (327)
T 3uc1_A 267 TSGGGVIRTA 276 (327)
T ss_dssp EGGGCEEEEE
T ss_pred cCCCeEEEEe
Confidence 7777777776
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=85.42 E-value=26 Score=41.90 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=81.5
Q ss_pred CcEEEEEeCC----CcEEEEeCCCCcEEEEE-e-------cC-CceEEEEEccCCCCEEEEEECCC------cEEEEeCC
Q 002407 578 SQHLLSSSMD----KTVRLWHLSSKTCLKIF-S-------HS-DYVTCIQFNPVDDRYFISGSLDA------KVRIWSIP 638 (927)
Q Consensus 578 d~~L~Sgs~D----gtV~lWDl~t~~~~~~~-~-------h~-~~V~~v~fsp~dg~~L~sgs~Dg------~I~IWDl~ 638 (927)
+..++.|+.+ ..+.+||+.+++....- . .. ..-..+.+.. ++.+++.|+.++ .+.+||+.
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeCC
Confidence 3455566543 45888998887655443 1 11 1123333322 466777776543 47889988
Q ss_pred CCcEEEeccCC--CcEEEEEECCCCCEEEEEECCC--eEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCc
Q 002407 639 ERQVVDWNDLH--EMVTAACYTPDGQGALVGSYKG--SCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSS 714 (927)
Q Consensus 639 t~~~v~~~~~~--~~V~sla~spdg~~l~tgs~Dg--~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~ 714 (927)
+.+-....... ..-.+++...+++.++.|+.++ .+.+||+.+............ ........++.+......
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~----p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEF----FQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGG----GGSCCBSCEEEEETTTTE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCC----CCcccceeEEEEeCCCCE
Confidence 87654433222 1222333334888888887755 699999998875543221000 011111233445554344
Q ss_pred EEEEEEC--C-----CcEEEEECC
Q 002407 715 EVLVTSA--D-----SRIRVVDGI 731 (927)
Q Consensus 715 ~Llsgs~--D-----g~I~VwD~~ 731 (927)
+++.|+. + ..+.+||..
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~ 576 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYD 576 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEEC
T ss_pred EEEECCcCCCCCeeeCcEEEEEcc
Confidence 6777765 2 458888854
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=83.32 E-value=26 Score=45.18 Aligned_cols=231 Identities=9% Similarity=0.130 Sum_probs=128.4
Q ss_pred ceEEEEeccCcccccceeeeeEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCcCcccceeecccccCccccEEEE
Q 002407 430 RVRVRQYGKSCKDLTALYKCQEIQAHNGSIWSIKFSLDGRYLASAGEDCVIHVWQVVESERKGELLEKQEDGHLNMLLLA 509 (927)
Q Consensus 430 ~~~V~i~~~~s~~l~~l~~~q~L~gH~~~I~~vafSpdG~~LaSgs~DgtVrVWdv~~~~~~~~l~~~~~~~~~~~v~~v 509 (927)
...+.+|+..++...+.+ .- ...|.-=+|-.+. .|+-.+ +..|.-|++........+......-....|...
T Consensus 85 g~~lQiFnl~~k~klks~-----~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY 156 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAH-----TM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINY 156 (1630)
T ss_pred CCeEEEeehHHhhhhccc-----cc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEe
Confidence 678999998777543322 11 2356555665443 344443 568999999753333222222111123444444
Q ss_pred ccCCCCCeecccccCCceeeecccccccccccccCcccccceEeecCCCceEEEccCCCCEEEEEecCC---cEEEE-Ee
Q 002407 510 NGSPEPTSLSPKHLDNHLEKKRRGRSINRKSLSLDHMVVPETVFALSDKPICSFQGHLDDVLDLSWSKS---QHLLS-SS 585 (927)
Q Consensus 510 ~~spd~~~la~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~k~i~~l~gH~~~V~~l~~spd---~~L~S-gs 585 (927)
..+++...++..+-... ...+...-.++....+.-+.+.||.+....+..... ..|++ +.
T Consensus 157 ~~d~~~kW~~l~gi~~~----------------~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 157 RTDAKQKWLLLTGISAQ----------------QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred eeCCCCCeEEEEeeccC----------------CCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 55555544433221100 001111225666677777778888776655554321 22332 22
Q ss_pred C---CCcEEEEeCCCC---------cEEEEE-e---cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccCC
Q 002407 586 M---DKTVRLWHLSSK---------TCLKIF-S---HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDLH 649 (927)
Q Consensus 586 ~---DgtV~lWDl~t~---------~~~~~~-~---h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~~ 649 (927)
. .+.++|-++... +.+..+ . ..+...++..++ ....+...+.-|.|.+||+.++.++......
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris 299 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEecCceEEEEecccchhhhhcccc
Confidence 2 268888888543 111111 1 234456788888 6667778888999999999999887654443
Q ss_pred -CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee
Q 002407 650 -EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ 685 (927)
Q Consensus 650 -~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~ 685 (927)
+.|...+.......++.....|.|.-..+....++.
T Consensus 300 ~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred CCceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 455555555554556666677877777666655443
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=79.79 E-value=73 Score=34.58 Aligned_cols=145 Identities=9% Similarity=-0.053 Sum_probs=71.2
Q ss_pred CEEEEEecC---CcEEEEEeCCCcEEEEeCCCCcEEEEEe--------------------cCCceEEEEEccCCCCEEEE
Q 002407 569 DVLDLSWSK---SQHLLSSSMDKTVRLWHLSSKTCLKIFS--------------------HSDYVTCIQFNPVDDRYFIS 625 (927)
Q Consensus 569 ~V~~l~~sp---d~~L~Sgs~DgtV~lWDl~t~~~~~~~~--------------------h~~~V~~v~fsp~dg~~L~s 625 (927)
.|.+|++.| .+.|+.+...+.|...+-. ++.-..+. ....|.+|.+.|.+...|+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 467777775 3556666655655544322 22211111 12357899998844455555
Q ss_pred EECCCcEEEEeCCCCcEEEecc-C------------CCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeeccccc
Q 002407 626 GSLDAKVRIWSIPERQVVDWND-L------------HEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINL 691 (927)
Q Consensus 626 gs~Dg~I~IWDl~t~~~v~~~~-~------------~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~ 691 (927)
+..++.|...+-....-..... . ...+.++.+.|. ...|+++...+ |...+-. ++....+...+
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D~-G~tW~~~~~~l 272 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDRR-EGVWKRIGDAM 272 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEETT-TTEEECGGGGS
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCCC-CCcceECCCCC
Confidence 5545545444322222111111 0 124889999985 45677776544 5544432 32222221101
Q ss_pred ccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 692 QNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 692 ~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
. ......+..+++.|..+..|+++.
T Consensus 273 ~----~~~~~~~~~i~~~p~~~~~l~~~t 297 (394)
T 3b7f_A 273 P----REVGDIGFPIVVHQRDPRTVWVFP 297 (394)
T ss_dssp C----TTTCSCEEEEEECSSCTTCEEEEE
T ss_pred C----CCCccceEEEEECCCCCCEEEEEe
Confidence 0 011134567888875444555553
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=79.65 E-value=47 Score=35.20 Aligned_cols=162 Identities=6% Similarity=-0.025 Sum_probs=86.9
Q ss_pred CCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECC--------------CcEEEEeCCCCcEEEeccCCCcE
Q 002407 587 DKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLD--------------AKVRIWSIPERQVVDWNDLHEMV 652 (927)
Q Consensus 587 DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~D--------------g~I~IWDl~t~~~v~~~~~~~~V 652 (927)
++.|...+.......+.... . +--+++ ++++|+-+... ..|+..++...+...+....
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~--~--~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~--- 107 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND--T--AMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP--- 107 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE--E--EEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC---
T ss_pred CceEEEEcCCCCCCEEccCC--c--eeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC---
Confidence 45566666655544433322 1 234567 77777766543 35777788776544443322
Q ss_pred EEEEECCCCCEEEEEE--C--CCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE
Q 002407 653 TAACYTPDGQGALVGS--Y--KGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV 728 (927)
Q Consensus 653 ~sla~spdg~~l~tgs--~--Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw 728 (927)
...|++++++|+-.. . ...|+..++......... .+. + ..|++++..++.+.....+|.+.
T Consensus 108 -~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt----------~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~ 172 (302)
T 3s25_A 108 -CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK----------NHY--L--FTCNTSDRYFYYNNPKNGQLYRY 172 (302)
T ss_dssp -EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEE----------SSC--C--CCSEEETTEEEEECTTTCCEEEE
T ss_pred -ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEe----------CCC--c--eEeeEECCEEEEEeCCCceEEEE
Confidence 236777888888776 2 345666666543322211 111 1 34567777444443446788888
Q ss_pred ECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCC--cEEEEECCCC
Q 002407 729 DGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDS--YVYVWKYEAE 775 (927)
Q Consensus 729 D~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg--~I~IWdl~s~ 775 (927)
+......... ... ... ..+.|++.+|+-....+ .|..-++...
T Consensus 173 ~l~g~~~~~l-~~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 173 DTASQSEALF-YDC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp ETTTTEEEEE-ECS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred ECCCCCEEEE-eCC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 7543322221 111 122 34568999888776543 4555555443
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=79.57 E-value=63 Score=33.72 Aligned_cols=182 Identities=13% Similarity=0.006 Sum_probs=94.0
Q ss_pred EEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEE-EEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEecc
Q 002407 570 VLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWND 647 (927)
Q Consensus 570 V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~-~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~~ 647 (927)
|..++......++. . |+.|+.|-....-.+. .......|..|+... .+.+.-. +|.|..|-... +++-....
T Consensus 65 i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~ 138 (282)
T 3qhy_B 65 VDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAE 138 (282)
T ss_dssp CCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGG
T ss_pred EEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCcc
Confidence 44555544444444 4 8888888755321111 111234677777653 3444445 99999997654 33211122
Q ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEE
Q 002407 648 LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRV 727 (927)
Q Consensus 648 ~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~V 727 (927)
....|..++..... .++-. +|.|+.|-......+.. + ......|..++.-... .++. .|+.|+.
T Consensus 139 ~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~-p--------~~~~~~v~~i~~G~~h--s~al--~~G~v~~ 202 (282)
T 3qhy_B 139 AQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTV-P--------AEAQSGVDDVAGGIFH--SLAL--KDGKVIA 202 (282)
T ss_dssp GGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSC-C--------GGGGSSEEEEEECSSE--EEEE--ETTEEEE
T ss_pred CCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCC-c--------eecCCCeEEEEecCCE--EEEE--ECCeEEE
Confidence 23457777655433 22233 79999997654322211 1 1123457777765532 3333 6999999
Q ss_pred EECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCC
Q 002407 728 VDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAES 776 (927)
Q Consensus 728 wD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~ 776 (927)
|-....-+.-........|..++..... .+.-. ||.|+.|=.....
T Consensus 203 wG~n~~gqlg~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 203 WGDNRYKQTTVPTEALSGVSAIASGEWY--SLALK-NGKVIAWGSSRTA 248 (282)
T ss_dssp EECCTTSTTCCCGGGGSSCCEEEECSSC--EEEEE-TTEEEEESTTCCC
T ss_pred EECCCCCCCCCCcccCCCceEEEcCCCE--EEEEE-CCEEEEecCCCCc
Confidence 9632210000011112345555544333 33333 9999999776543
No 348
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.92 E-value=86 Score=33.31 Aligned_cols=104 Identities=15% Similarity=0.092 Sum_probs=68.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCc-----EEEE--EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-------cE
Q 002407 577 KSQHLLSSSMDKTVRLWHLSSKT-----CLKI--FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QV 642 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t~~-----~~~~--~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-------~~ 642 (927)
++.+|+..+..|.++...+..-. -+.. +...+.+..+.... ....|+..+.+|.+..+.+..- +=
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 34778999999999988774321 1122 22445666665554 5667888899999988876431 11
Q ss_pred EEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCC
Q 002407 643 VDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSEN 681 (927)
Q Consensus 643 v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~ 681 (927)
+.. +...+.|..+....++..+++.+..|..+...+..-
T Consensus 192 v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 192 VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 222 223456777766666777889999999998887643
No 349
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.12 E-value=84 Score=32.79 Aligned_cols=201 Identities=10% Similarity=0.068 Sum_probs=113.6
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEE---eCCCCcEEEEEecCCceEEEEEccC-CCCEEEEEECCCcEEEEeCCCCc--
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLW---HLSSKTCLKIFSHSDYVTCIQFNPV-DDRYFISGSLDAKVRIWSIPERQ-- 641 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lW---Dl~t~~~~~~~~h~~~V~~v~fsp~-dg~~L~sgs~Dg~I~IWDl~t~~-- 641 (927)
.+..+..... ..|+.-+..|.++-- ++........+.....|..+.. +. +..+++..+.+|.++...+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 3444433333 566667777766543 3322211001444556666644 31 46789999999999998865431
Q ss_pred ---E-EEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEE
Q 002407 642 ---V-VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVL 717 (927)
Q Consensus 642 ---~-v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Ll 717 (927)
. ...+...+.+..+........++..+..|.+..+....-........-....+ ......|..+...+++. .++
T Consensus 104 ~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L~~~d~vv~~~~~~~~~-~ll 181 (276)
T 3no0_A 104 AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK-LEKNDETSGLRIWNGEP-YLL 181 (276)
T ss_dssp STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEEEESSCS-EEE
T ss_pred cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-cCCCCEEEEEEEeCCCC-EEE
Confidence 1 11222345676666666677899999999998887643222111000000001 12335566665555444 788
Q ss_pred EEECCCcEEEEECCc---------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEE--EECCCC
Q 002407 718 VTSADSRIRVVDGID---------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYV--WKYEAE 775 (927)
Q Consensus 718 sgs~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~I--Wdl~s~ 775 (927)
..+..|.++.....+ ....+ .....+..+....+...++..+.+|.+.. ++...-
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i---~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVS---GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECC---CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEE---cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 889999998887321 11212 23344555544444556777888898888 887653
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=73.37 E-value=37 Score=40.59 Aligned_cols=103 Identities=16% Similarity=0.252 Sum_probs=62.2
Q ss_pred cEEEEEeCC------CcEEEEeCCCCcEEEEEe--cCCceEEEEEccCCCCEEEEEECCC--cEEEEeCCCCcEEEecc-
Q 002407 579 QHLLSSSMD------KTVRLWHLSSKTCLKIFS--HSDYVTCIQFNPVDDRYFISGSLDA--KVRIWSIPERQVVDWND- 647 (927)
Q Consensus 579 ~~L~Sgs~D------gtV~lWDl~t~~~~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg--~I~IWDl~t~~~v~~~~- 647 (927)
..++.|+.+ ..+.+||+.+.+....-. ....-.+++... ++.+++.|+.++ .+.+||+.+.+-.....
T Consensus 453 ~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 531 (695)
T 2zwa_A 453 QLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK 531 (695)
T ss_dssp EEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred EEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence 445555543 358889988875544322 112222333323 678888887655 69999998876554332
Q ss_pred -----CCCcEEEEEECCC-CCEEEEEEC--C-----CeEEEEECCCCe
Q 002407 648 -----LHEMVTAACYTPD-GQGALVGSY--K-----GSCHLYNTSENK 682 (927)
Q Consensus 648 -----~~~~V~sla~spd-g~~l~tgs~--D-----g~I~IwDl~~~~ 682 (927)
......++.+..+ ++.++.|+. + ..+.+||+.+..
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1122334555555 677777765 2 458999998877
No 351
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=72.79 E-value=23 Score=37.98 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=46.3
Q ss_pred cEEEEEeC-CCcEEEEeCCC--CcEEEEEecC---CceEEEEEccCCCCEEEEEEC-C---------CcEEEEeCCCCcE
Q 002407 579 QHLLSSSM-DKTVRLWHLSS--KTCLKIFSHS---DYVTCIQFNPVDDRYFISGSL-D---------AKVRIWSIPERQV 642 (927)
Q Consensus 579 ~~L~Sgs~-DgtV~lWDl~t--~~~~~~~~h~---~~V~~v~fsp~dg~~L~sgs~-D---------g~I~IWDl~t~~~ 642 (927)
..++.|+. ...+.++|+.+ .+....-... ..-.+++.. ++.+++.|+. + ..+.+||+.+.+-
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp EEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred EEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 34444443 34688889874 3332221111 111222222 5677777765 2 4588999988765
Q ss_pred EEeccCC----CcEEEEEECCCCCEEEEEECC
Q 002407 643 VDWNDLH----EMVTAACYTPDGQGALVGSYK 670 (927)
Q Consensus 643 v~~~~~~----~~V~sla~spdg~~l~tgs~D 670 (927)
....... ....++. .+++.++.|+.+
T Consensus 99 ~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5433222 1222222 577888888754
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=71.93 E-value=99 Score=32.19 Aligned_cols=219 Identities=12% Similarity=0.020 Sum_probs=110.2
Q ss_pred CEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEE-EEecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-CcEEEec
Q 002407 569 DVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLK-IFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQVVDWN 646 (927)
Q Consensus 569 ~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~-~~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~~v~~~ 646 (927)
.|..|+......++. . |+.|+.|-....-.+. .......|..|+... ...++. . ||.|..|-... +++-.-.
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 456666555444444 4 8999999765321111 111234677777653 333333 5 89999997654 2221111
Q ss_pred cCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEE
Q 002407 647 DLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIR 726 (927)
Q Consensus 647 ~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~ 726 (927)
.....|..++.... +.++-. +|.|+.|-....-.+.. + ......|..++.... ..++-. |+.|+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~-----~----~~~~~~i~~i~~G~~---~~~~l~-~G~v~ 162 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTV-----P----AEAQSGVTALDGGVY---TALAVK-NGGVI 162 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSC-----C----GGGGSSEEEEEECSS---EEEEEE-TTEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCC-----C----ccCCCCeEEEEcccC---EEEEEE-CCEEE
Confidence 22346777766543 333444 99999997654322111 0 122345777766543 333334 79999
Q ss_pred EEECCcceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCCCCcccccccceeeeeeeecCCCeEEEEecCC
Q 002407 727 VVDGIDLVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAESRPSRSKSITVTHSYEHFHCQDVSVAIPWPG 806 (927)
Q Consensus 727 VwD~~~~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~~~~~~~~~~~~~~~~~~~~~~~v~vavs~~g 806 (927)
.|-....-+.-........|..++... .+.+.- .||.|+.|=......+........... ........++++. +|
T Consensus 163 ~wG~n~~gqlg~p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~-~i~~G~~h~~al~-~g 237 (282)
T 3qhy_B 163 AWGDNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVS-AIASGEWYSLALK-NG 237 (282)
T ss_dssp EEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCC-EEEECSSCEEEEE-TT
T ss_pred EecCCCCCCCCCceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcccCCCce-EEEcCCCEEEEEE-CC
Confidence 996322100000011123466665433 333333 599999998766433322111110011 1111234455666 77
Q ss_pred ceeEEeec
Q 002407 807 VGDTWGLQ 814 (927)
Q Consensus 807 ~~~i~~~~ 814 (927)
..+.|...
T Consensus 238 ~v~~wG~n 245 (282)
T 3qhy_B 238 KVIAWGSS 245 (282)
T ss_dssp EEEEESTT
T ss_pred EEEEecCC
Confidence 77777644
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=69.40 E-value=1.4e+02 Score=32.84 Aligned_cols=172 Identities=9% Similarity=0.113 Sum_probs=92.6
Q ss_pred cEEEEeCCCC--cEEEEEec-------CCceEEEEEc---cC---CCCEEEEEE-CCCcEEEEeCCCCcEEEecc----C
Q 002407 589 TVRLWHLSSK--TCLKIFSH-------SDYVTCIQFN---PV---DDRYFISGS-LDAKVRIWSIPERQVVDWND----L 648 (927)
Q Consensus 589 tV~lWDl~t~--~~~~~~~h-------~~~V~~v~fs---p~---dg~~L~sgs-~Dg~I~IWDl~t~~~v~~~~----~ 648 (927)
.|.+||+.+. +.++.+.. ...+..+++. |. ++.+++... ....|.|+|+.+++.-.... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5888999999 88888752 3467888887 21 134444444 46679999999876544321 0
Q ss_pred ---------------CCcEEEEEECCC----CCEEEEEECCCeEEEEECCCCeeeee-cccccccccccCCCCCeEEEEE
Q 002407 649 ---------------HEMVTAACYTPD----GQGALVGSYKGSCHLYNTSENKLQQK-SPINLQNKKKRSHQRKITGFQF 708 (927)
Q Consensus 649 ---------------~~~V~sla~spd----g~~l~tgs~Dg~I~IwDl~~~~~~~~-~~i~~~~~~~~~h~~~Vtsl~f 708 (927)
...+..++++|+ ++.|.-....+. ++|.+.+..+... ....+...-.++....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 236778888887 666666554442 2333221111000 0000000001111233445667
Q ss_pred cCCCCcEEEEEECCCcEEEEECCc-c-----eEEEEeecCCcceEEEEEecCCCEEEEE
Q 002407 709 APGSSSEVLVTSADSRIRVVDGID-L-----VHKFKGFRNTNSQISASLTANGRYVVSA 761 (927)
Q Consensus 709 spdg~~~Llsgs~Dg~I~VwD~~~-~-----~~~~~~~~~~~~v~sv~fspdg~~Lasg 761 (927)
.+....++++--....|..|+... . ...+.....-.....+.+..+|.+.+..
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 543333666667888999999754 1 2333222233445566665555544444
No 354
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=69.25 E-value=1.2e+02 Score=32.08 Aligned_cols=152 Identities=9% Similarity=0.056 Sum_probs=83.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCC-----CcEEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-------cE
Q 002407 577 KSQHLLSSSMDKTVRLWHLSS-----KTCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QV 642 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~t-----~~~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-------~~ 642 (927)
.+.+++..+..|.++-..+.. ..-+..+ ...+.+..+.... +...|+..+.+|.+..+....- +-
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTS-GEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeC-CCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 346799999999999987642 1122222 2335555555544 4556778888899888876321 11
Q ss_pred EE--eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEE
Q 002407 643 VD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTS 720 (927)
Q Consensus 643 v~--~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs 720 (927)
+. .+...+.|..+....++..+++.+..|.++-.++........-.......+.......+..+....+.. .++..+
T Consensus 187 v~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~-~l~~~t 265 (307)
T 1zi0_A 187 VRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD-QIMMIT 265 (307)
T ss_dssp EECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTC-EEEEEE
T ss_pred eEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCc-eEEEEc
Confidence 12 223345677776656667889999999998887643221111000000001112224444444333333 456666
Q ss_pred CCCcEEEEEC
Q 002407 721 ADSRIRVVDG 730 (927)
Q Consensus 721 ~Dg~I~VwD~ 730 (927)
.+|.+.-+..
T Consensus 266 ~~g~~ir~~~ 275 (307)
T 1zi0_A 266 DAGTLVRTRV 275 (307)
T ss_dssp SSCCEEEEEG
T ss_pred CCCcEEEEec
Confidence 6666655553
No 355
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=69.19 E-value=1.4e+02 Score=32.70 Aligned_cols=104 Identities=14% Similarity=0.025 Sum_probs=63.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCC-----cEEEEE--ecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-------cEE
Q 002407 578 SQHLLSSSMDKTVRLWHLSSK-----TCLKIF--SHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER-------QVV 643 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl~t~-----~~~~~~--~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~-------~~v 643 (927)
+.+|+.++..|.++...+..- .-+..+ .-.+.+..+.... ....|+..+..|.+..+....- +=+
T Consensus 113 ~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~-~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV 191 (370)
T 3l6v_A 113 NRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD-GDRDVLLFASNGKTVRFGESTVRSMGRTATGV 191 (370)
T ss_dssp TCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC-SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC-CCceEEEEeCCCeEEEEEccccCccCCCCCCe
Confidence 468999999999998876421 112222 2345555555554 5567778888898888875321 112
Q ss_pred Ee--ccCCCcEEEEEECC-----------------------------------CCCEEEEEECCCeEEEEECCCCe
Q 002407 644 DW--NDLHEMVTAACYTP-----------------------------------DGQGALVGSYKGSCHLYNTSENK 682 (927)
Q Consensus 644 ~~--~~~~~~V~sla~sp-----------------------------------dg~~l~tgs~Dg~I~IwDl~~~~ 682 (927)
.. +...+.|.++...+ ++..+++.+..|..+...+....
T Consensus 192 ~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 192 RGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ECCCCCTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSC
T ss_pred eeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 22 22234555555444 45688899999998888776433
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=68.18 E-value=62 Score=36.62 Aligned_cols=115 Identities=8% Similarity=0.090 Sum_probs=62.2
Q ss_pred CcEEEEEECCCCC-EEEEEECCCeEEEEECCCCeeeeeccccccccccc----CCCCCeEEEEEcCC---CCcEEEEEEC
Q 002407 650 EMVTAACYTPDGQ-GALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKR----SHQRKITGFQFAPG---SSSEVLVTSA 721 (927)
Q Consensus 650 ~~V~sla~spdg~-~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~----~h~~~Vtsl~fspd---g~~~Llsgs~ 721 (927)
...+.|+|.|+|. .|+++...|.|++++......... ...+...... ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEP-YLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSC-SEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeee-ecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 4678999999996 566677899999997543211110 0011100000 12456889999996 2223333332
Q ss_pred C------------CcEEEEECC----------cceEEEEee--cCCcceEEEEEecCCCEEEEEECCC
Q 002407 722 D------------SRIRVVDGI----------DLVHKFKGF--RNTNSQISASLTANGRYVVSASEDS 765 (927)
Q Consensus 722 D------------g~I~VwD~~----------~~~~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg 765 (927)
+ ..|.-|... .....+... ........+.|.|||.+.++.++.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 123334321 112222221 2234467899999998888776544
No 357
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=66.65 E-value=49 Score=38.40 Aligned_cols=141 Identities=9% Similarity=0.079 Sum_probs=84.5
Q ss_pred cEEEEeCCC----C-cEEEeccCCCcEEEEEECCCCCEEEEEEC-CCeEEEEECCCCeeeeeccc-ccc--cccccCCCC
Q 002407 631 KVRIWSIPE----R-QVVDWNDLHEMVTAACYTPDGQGALVGSY-KGSCHLYNTSENKLQQKSPI-NLQ--NKKKRSHQR 701 (927)
Q Consensus 631 ~I~IWDl~t----~-~~v~~~~~~~~V~sla~spdg~~l~tgs~-Dg~I~IwDl~~~~~~~~~~i-~~~--~~~~~~h~~ 701 (927)
.|.+.|.+. + .++...........+.++|||+++++++. +.++.++|+........-.+ ... .........
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 477888765 2 34555566677778899999999888764 67899999874221100000 000 000012345
Q ss_pred CeEEEEEcCCCCcEEEEEECCCcEEEEECCc------------ceEEEEeecCCcceEEEEE------ecCCCEEEEEEC
Q 002407 702 KITGFQFAPGSSSEVLVTSADSRIRVVDGID------------LVHKFKGFRNTNSQISASL------TANGRYVVSASE 763 (927)
Q Consensus 702 ~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~------------~~~~~~~~~~~~~v~sv~f------spdg~~Lasgs~ 763 (927)
.....+|.++| +...+-.-|.+|..|+... .+.++..| .. +-.+.- .+||++|++...
T Consensus 379 GPlHt~Fd~~G-~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~--Yq-pGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 379 GPLHTTFDGRG-NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH--YQ-PGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp CEEEEEECSSS-EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS--SC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred cccEEEECCCC-ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc--cC-CcccccCCCccCCCCccEEEEecc
Confidence 57788999988 3555566899999999432 23333322 21 222222 579999999853
Q ss_pred ---CCcE----------EEEECCCC
Q 002407 764 ---DSYV----------YVWKYEAE 775 (927)
Q Consensus 764 ---Dg~I----------~IWdl~s~ 775 (927)
|..+ .+.|+...
T Consensus 455 ~skdrfl~vGpl~pen~QlidIsGd 479 (638)
T 3sbq_A 455 FSKDRFLPVGPLHPENDQLIDISGD 479 (638)
T ss_dssp CCTTSSCCCSSSCCEEEEEEECSSS
T ss_pred cccccCcCCCCCCCCcceeEecCCC
Confidence 4433 66777554
No 358
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=62.57 E-value=1.5e+02 Score=35.82 Aligned_cols=162 Identities=10% Similarity=0.062 Sum_probs=82.2
Q ss_pred CCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-------CCcEEEEEECCC-CCEEEEEECCC-----eE
Q 002407 607 SDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTPD-GQGALVGSYKG-----SC 673 (927)
Q Consensus 607 ~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~spd-g~~l~tgs~Dg-----~I 673 (927)
...|.+|+++|.+...++++...+.|...+=....-...... ...+.+|++.|. ...++++.... ..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 468999999996677888888777776655222222222221 236999999984 34455554331 22
Q ss_pred EEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE-EC-CcceEEEEee---cCCcceEE
Q 002407 674 HLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV-DG-IDLVHKFKGF---RNTNSQIS 748 (927)
Q Consensus 674 ~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw-D~-~~~~~~~~~~---~~~~~v~s 748 (927)
.+.....++.-..................+..++++|.....++++...+.|..= |. .......... .....+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Confidence 2333444544333321111000000111356788888765567777645544332 22 2222211100 11244677
Q ss_pred EEEecC-CCEEEEEECC-CcEE
Q 002407 749 ASLTAN-GRYVVSASED-SYVY 768 (927)
Q Consensus 749 v~fspd-g~~Lasgs~D-g~I~ 768 (927)
+.++|. +..|+.+..+ +.|+
T Consensus 174 i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 174 VIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEECTTSTTCEEEEESSTTCEE
T ss_pred EEECCCCCCEEEEEEcCCCeEE
Confidence 888874 4455555554 4443
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.00 E-value=1.7e+02 Score=31.26 Aligned_cols=195 Identities=10% Similarity=0.054 Sum_probs=110.3
Q ss_pred cEEEEEeCCCcEEEE---eCCC------CcEEEE---EecCCceEEEEEccC--CCCEEEEEECCCcEEEEeCCCCc---
Q 002407 579 QHLLSSSMDKTVRLW---HLSS------KTCLKI---FSHSDYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPERQ--- 641 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lW---Dl~t------~~~~~~---~~h~~~V~~v~fsp~--dg~~L~sgs~Dg~I~IWDl~t~~--- 641 (927)
..|+.-+..|.++-. ++.. |.++.. +.....|..+...+. +..+++..+.+|.|+.-.+..-.
T Consensus 54 d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~ 133 (327)
T 3uc1_A 54 DLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR 133 (327)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC
T ss_pred CEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc
Confidence 566666666765544 4432 222111 123445655544331 46789999999999988764421
Q ss_pred --EEE--eccCCCcEEEEEECCCCCEEEEEECCCeEEEEECC--CCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 642 --VVD--WNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTS--ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 642 --~v~--~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~--~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
-+. .+...+.+..+........|+..+..|.+..+... .-........-....+ ......|.++...+.+. .
T Consensus 134 r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~-~ 211 (327)
T 3uc1_A 134 SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR-FNIDDRLLSLNVVREGT-Y 211 (327)
T ss_dssp SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC-CCTTCCEEEEEECCTTC-E
T ss_pred cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec-CCCCCEEEEEEEECCCC-E
Confidence 111 22224556666655566789999999999888876 3221111000000001 12345677776665444 7
Q ss_pred EEEEECCCcEEEEECCc---------ceEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 716 VLVTSADSRIRVVDGID---------LVHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~---------~~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|+..+..|.++.-.... ....++.......+..+....+...|+..+.+|.+.-+....-
T Consensus 212 ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i 280 (327)
T 3uc1_A 212 LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQV 280 (327)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGS
T ss_pred EEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhc
Confidence 88889999998876322 2222222221334555555555567777888888888887653
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=60.11 E-value=2.2e+02 Score=31.97 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEecC
Q 002407 457 GSIWSIKFSLDGR-YLASAGEDCVIHVWQVV 486 (927)
Q Consensus 457 ~~I~~vafSpdG~-~LaSgs~DgtVrVWdv~ 486 (927)
..-+.|+|.|||. .|+.+...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4578999999996 45555678999999753
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=59.64 E-value=1.9e+02 Score=30.90 Aligned_cols=197 Identities=9% Similarity=0.059 Sum_probs=104.4
Q ss_pred CcEEEEEeCCCcEEEEeC---CC------CcEEE---EEecCCceEEEEEccC--CCCEEEEEECCCcEEEEeCCC----
Q 002407 578 SQHLLSSSMDKTVRLWHL---SS------KTCLK---IFSHSDYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPE---- 639 (927)
Q Consensus 578 d~~L~Sgs~DgtV~lWDl---~t------~~~~~---~~~h~~~V~~v~fsp~--dg~~L~sgs~Dg~I~IWDl~t---- 639 (927)
...|+..+..|.++-+.. .. |.++. .+.....|..+...+. ++.+|+.++..|.++...+..
T Consensus 50 ~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~ 129 (323)
T 1wp5_A 50 KDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQ 129 (323)
T ss_dssp TSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCS
T ss_pred CCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhc
Confidence 356666777776555443 21 22111 1223345555433331 256789999999999887632
Q ss_pred --CcEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 640 --RQVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 640 --~~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
+.-+.. +...+.+..+........++..+.+|.+..+....-.............+ ......|.++...+++...
T Consensus 130 ~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~-L~~~d~Vv~~~~~~~~~~~ 208 (323)
T 1wp5_A 130 RYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMN-LKEGDYIVSGQLITSKDES 208 (323)
T ss_dssp CCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCC-CCTTCCEEEEEEECCTTCE
T ss_pred cccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEE-eCCCCEEEEEEEEcCCCcE
Confidence 111221 22235565555555566788899999998888754222111000000111 1234456666554443325
Q ss_pred EEEEECCCcEEEEECCc---------ceEEEEeec-CCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 716 VLVTSADSRIRVVDGID---------LVHKFKGFR-NTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~---------~~~~~~~~~-~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
|++.+..|..+..+... ....++... ....+..+....++..|+..+..|.+....+..-
T Consensus 209 ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i 278 (323)
T 1wp5_A 209 IVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDI 278 (323)
T ss_dssp EEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGS
T ss_pred EEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhc
Confidence 78888888888776322 122222121 2224544433344456677778888777777653
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=57.94 E-value=92 Score=38.72 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=32.0
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEecc
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWND 647 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~ 647 (927)
.+.+++..+ +..++++-+.|+++|+|++.+++++...+
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 466777777 78899999999999999999999886543
No 363
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=57.88 E-value=2.2e+02 Score=31.20 Aligned_cols=143 Identities=9% Similarity=0.138 Sum_probs=80.8
Q ss_pred cEEEEeCCCC--cEEEeccCC-------CcEEEEEEC---CC----CCEEEEEE-CCCeEEEEECCCCeeeeeccccccc
Q 002407 631 KVRIWSIPER--QVVDWNDLH-------EMVTAACYT---PD----GQGALVGS-YKGSCHLYNTSENKLQQKSPINLQN 693 (927)
Q Consensus 631 ~I~IWDl~t~--~~v~~~~~~-------~~V~sla~s---pd----g~~l~tgs-~Dg~I~IwDl~~~~~~~~~~i~~~~ 693 (927)
+|.+||+.+. +++.....+ ..+..+.+. |. +.++.++. ..+-|.+||+.+++......-.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5667788887 776644432 356777776 22 34444444 3567999999998866544211111
Q ss_pred cc---c--cC----CCCCeEEEEEcCC----CCcEEEEEE-CCCcEEEEEC-----CcceE--EEEeecC-CcceEEEEE
Q 002407 694 KK---K--RS----HQRKITGFQFAPG----SSSEVLVTS-ADSRIRVVDG-----IDLVH--KFKGFRN-TNSQISASL 751 (927)
Q Consensus 694 ~~---~--~~----h~~~Vtsl~fspd----g~~~Llsgs-~Dg~I~VwD~-----~~~~~--~~~~~~~-~~~v~sv~f 751 (927)
.. . .+ -...|..|+++|+ ++ .|.... ....++-..+ ..... +..+... ......+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~-~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNR-PAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCC-EEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCe-EEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 00 0 00 1247889999997 55 444443 3334444431 11111 1122222 233445677
Q ss_pred e-cCCCEEEEEECCCcEEEEECCC
Q 002407 752 T-ANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 752 s-pdg~~Lasgs~Dg~I~IWdl~s 774 (927)
. .+|.++++--....|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 6787778877888999999875
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.94 E-value=48 Score=41.31 Aligned_cols=37 Identities=16% Similarity=0.441 Sum_probs=31.9
Q ss_pred CEEEEEecCC-cEEEEEeCCCcEEEEeCCCCcEEEEEe
Q 002407 569 DVLDLSWSKS-QHLLSSSMDKTVRLWHLSSKTCLKIFS 605 (927)
Q Consensus 569 ~V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~~~~~~~~ 605 (927)
.|.++...++ .++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 5677777776 789999999999999999999988765
No 365
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=45.34 E-value=4.2e+02 Score=30.80 Aligned_cols=194 Identities=11% Similarity=0.119 Sum_probs=109.4
Q ss_pred EEEEEe-CCCcEEEEeCCCCcEEEEEe--cCCceEEEEEc--cCCCCEEEEEEC-------CCcE---------EE---E
Q 002407 580 HLLSSS-MDKTVRLWHLSSKTCLKIFS--HSDYVTCIQFN--PVDDRYFISGSL-------DAKV---------RI---W 635 (927)
Q Consensus 580 ~L~Sgs-~DgtV~lWDl~t~~~~~~~~--h~~~V~~v~fs--p~dg~~L~sgs~-------Dg~I---------~I---W 635 (927)
+|+.-. ....|-..++...++-+++. ....+..+.|- | +..|++.++. ||.. .+ .
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i 222 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI 222 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence 344444 34567778888888877765 66778888886 6 6667777765 2221 11 1
Q ss_pred eCCCCcEEEeccCCCcEEEEEECCCCCEEEEEECC---------------CeEEEEECC-------CCeeeeec--cccc
Q 002407 636 SIPERQVVDWNDLHEMVTAACYTPDGQGALVGSYK---------------GSCHLYNTS-------ENKLQQKS--PINL 691 (927)
Q Consensus 636 Dl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~D---------------g~I~IwDl~-------~~~~~~~~--~i~~ 691 (927)
|..+.++..........-.+...++|++.++.+.+ ..|.++++. .++....- .+.+
T Consensus 223 D~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~V 302 (638)
T 3sbq_A 223 DAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPV 302 (638)
T ss_dssp ETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCE
T ss_pred cCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeE
Confidence 22222222111112233345557788887776543 246666653 11111100 0000
Q ss_pred c-ccc----------ccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcceE------------EEEeecCCcceEE
Q 002407 692 Q-NKK----------KRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDLVH------------KFKGFRNTNSQIS 748 (927)
Q Consensus 692 ~-~~~----------~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~~~------------~~~~~~~~~~v~s 748 (927)
. .+. .....+...++.++|+|...++.+-.+.++.|+|..++.. .............
T Consensus 303 iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlH 382 (638)
T 3sbq_A 303 LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLH 382 (638)
T ss_dssp EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEE
T ss_pred EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccE
Confidence 0 000 0012234456789999997777777899999999543211 1111122334567
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCC
Q 002407 749 ASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 749 v~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
.+|.++|....+.--|..|.-|++..
T Consensus 383 t~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 383 TTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEECCCCceEeeeeecceEEEEeccH
Confidence 89999995555666899999999975
No 366
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=43.91 E-value=3e+02 Score=28.74 Aligned_cols=115 Identities=8% Similarity=0.046 Sum_probs=64.2
Q ss_pred cCCCceEEEccCCCCEEEEEecCC-cEEEEEe-CCCcEEEEeCCCCcEEEEEecCCceEEEEEccCCCCEEEEEECCC--
Q 002407 555 LSDKPICSFQGHLDDVLDLSWSKS-QHLLSSS-MDKTVRLWHLSSKTCLKIFSHSDYVTCIQFNPVDDRYFISGSLDA-- 630 (927)
Q Consensus 555 ~s~k~i~~l~gH~~~V~~l~~spd-~~L~Sgs-~DgtV~lWDl~t~~~~~~~~h~~~V~~v~fsp~dg~~L~sgs~Dg-- 630 (927)
+.+.....+..+.. +.|+++ +.|+-.+ ....|.+-++..+.....+.. ... +.+.| ++.+|+-....+
T Consensus 136 ~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P-~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 136 IDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC--NCY-KPVVL-DDTNVYYMDVNRDN 207 (302)
T ss_dssp TTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS--CEE-EEEEE-ETTEEEEEEGGGTT
T ss_pred CCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC--Ccc-ceeee-cCCEEEEEEcCCCc
Confidence 34444444444432 334444 4454444 467888888887765555432 222 34668 777777665443
Q ss_pred cEEEEeCCCCcEEEeccCCCcEEEEEECCCCCEEEEEEC--CCeEEEEECCCC
Q 002407 631 KVRIWSIPERQVVDWNDLHEMVTAACYTPDGQGALVGSY--KGSCHLYNTSEN 681 (927)
Q Consensus 631 ~I~IWDl~t~~~v~~~~~~~~V~sla~spdg~~l~tgs~--Dg~I~IwDl~~~ 681 (927)
.|..-++.......+.. ..+ ..|+|++.+|.-+.. .+.|..-++...
T Consensus 208 ~I~~~~ldG~~~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 208 AIVHVNINNPNPVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEECSSSCCCEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEECCCCCeEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 56666776665444432 233 347788888876533 355666666553
No 367
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=39.53 E-value=3.3e+02 Score=27.84 Aligned_cols=151 Identities=11% Similarity=-0.015 Sum_probs=82.5
Q ss_pred CEEEEEECCCcEEEEeCCCCcEE-EeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC---Ceeeeecccccccccc
Q 002407 621 RYFISGSLDAKVRIWSIPERQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSE---NKLQQKSPINLQNKKK 696 (927)
Q Consensus 621 ~~L~sgs~Dg~I~IWDl~t~~~v-~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~---~~~~~~~~i~~~~~~~ 696 (927)
..+++.+.+|.|+--........ ..+...+.+..+........|+..+..|.++-+.... ...... ++...-.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~---~i~~~i~ 79 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE---PLTGKLT 79 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCE---EGGGTCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCe---Eeeeeec
Confidence 34566777888776554332110 0122234555554444555677788889876665432 111100 0000001
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEECCcc-------eEEEEeecCCcceEEEEEe-cCCCEEEEEECCCcEE
Q 002407 697 RSHQRKITGFQFAPGSSSEVLVTSADSRIRVVDGIDL-------VHKFKGFRNTNSQISASLT-ANGRYVVSASEDSYVY 768 (927)
Q Consensus 697 ~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~~-------~~~~~~~~~~~~v~sv~fs-pdg~~Lasgs~Dg~I~ 768 (927)
......|.++....++ ..|+..+..|.++.....+. ...+.. .....+..+... .++..|+..+.+|.+.
T Consensus 80 L~~~e~Iv~~~~~~~~-~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~G~~l 157 (256)
T 1zvt_A 80 LPPGATVDHMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQAGRML 157 (256)
T ss_dssp CCTTCCEEEEECCCTT-CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETTSEEE
T ss_pred CCCCCEEEEEEEeCCC-CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCCCeEE
Confidence 1234567776443333 36888899999999873221 222222 223345555555 3456888999999999
Q ss_pred EEECCCCC
Q 002407 769 VWKYEAES 776 (927)
Q Consensus 769 IWdl~s~~ 776 (927)
.+.+..-.
T Consensus 158 rf~~~ei~ 165 (256)
T 1zvt_A 158 MFPVSDLP 165 (256)
T ss_dssp EEEGGGSC
T ss_pred EEEHHHCC
Confidence 99987643
No 368
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=36.65 E-value=4.3e+02 Score=28.41 Aligned_cols=201 Identities=10% Similarity=0.098 Sum_probs=106.1
Q ss_pred EEEEEecCC-cEEEEEeCCCcEEEEeCCCC---------cE--EEEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEE
Q 002407 570 VLDLSWSKS-QHLLSSSMDKTVRLWHLSSK---------TC--LKIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIW 635 (927)
Q Consensus 570 V~~l~~spd-~~L~Sgs~DgtV~lWDl~t~---------~~--~~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IW 635 (927)
+..++.+.. ...+.-..||.|+.|-.... .. ...+. ....|..|+. ...+.+....+|.|..|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEe
Confidence 444455443 55666678999999954321 11 11111 2235666665 45566777789999999
Q ss_pred eCCC-Cc-----------EEEecc-CCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeee---cccccccccccCC
Q 002407 636 SIPE-RQ-----------VVDWND-LHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQK---SPINLQNKKKRSH 699 (927)
Q Consensus 636 Dl~t-~~-----------~v~~~~-~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~---~~i~~~~~~~~~h 699 (927)
-... ++ +..... ....|..++......+.++-..+|.|+.|-....-.+.. .....+.......
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 6532 11 111111 123566676654345677778899999996542111000 0000000000112
Q ss_pred CCCeEEEEEcCCCCcEEEEEECCCcEEEEECCc----------ceEEEEee--cCCcceEEEEEecCCCEEEEEECCCcE
Q 002407 700 QRKITGFQFAPGSSSEVLVTSADSRIRVVDGID----------LVHKFKGF--RNTNSQISASLTANGRYVVSASEDSYV 767 (927)
Q Consensus 700 ~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD~~~----------~~~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg~I 767 (927)
...|..++.-.. ..++-..+|.|+.|-... ........ .....|..++ ....+.+....||.|
T Consensus 264 ~~~v~~v~~G~~---hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia--~G~~h~~al~~~G~v 338 (389)
T 3kci_A 264 GLGVVKVECGSQ---FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIA--TGSLHCVCCTEDGEV 338 (389)
T ss_dssp TSCEEEEEEETT---EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEE--ECSSEEEEEETTCCE
T ss_pred CCcEEEEeCCCC---EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEE--eccCeEEEECCCCCE
Confidence 234666665442 566668899999996321 11111111 1123355544 344556666889999
Q ss_pred EEEECCCCCCc
Q 002407 768 YVWKYEAESRP 778 (927)
Q Consensus 768 ~IWdl~s~~~~ 778 (927)
+.|=......+
T Consensus 339 ~~wG~n~~GqL 349 (389)
T 3kci_A 339 YTWGDNDEGQL 349 (389)
T ss_dssp EEEECCTTSTT
T ss_pred EEeeCCCCCcC
Confidence 99988765443
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=35.02 E-value=4.2e+02 Score=27.76 Aligned_cols=197 Identities=9% Similarity=0.035 Sum_probs=107.6
Q ss_pred CCcEEEEEeCCCcEEEEeC---CC------CcEEE---EEecCCceEEEEEcc--CCCCEEEEEECCCcEEEEeCCCC--
Q 002407 577 KSQHLLSSSMDKTVRLWHL---SS------KTCLK---IFSHSDYVTCIQFNP--VDDRYFISGSLDAKVRIWSIPER-- 640 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl---~t------~~~~~---~~~h~~~V~~v~fsp--~dg~~L~sgs~Dg~I~IWDl~t~-- 640 (927)
....|+..+..|.++-+.. .. |..+. .+.....|..+...+ .++.+++..+..|.++...+..-
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 131 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 131 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTT
T ss_pred CCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhc
Confidence 3467777777887655543 22 22111 123444566554321 14567889999999998876421
Q ss_pred ---cEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 641 ---QVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 641 ---~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.-+.. +...+.+..+........++..+.+|.+..+....-.............+ ......|.++....++. .
T Consensus 132 ~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~-L~~~d~Vv~~~~~~~~~-~ 209 (307)
T 1zi0_A 132 LRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIR-LGEGDKVVSLIVPRGDG-A 209 (307)
T ss_dssp CCTTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEEEECCCSSC-E
T ss_pred cccCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEE-eCCCCEEEEEEEecCCC-E
Confidence 11121 22235565555555566788889999988887754222211000000001 12345576766554444 6
Q ss_pred EEEEECCCcEEEEECCcc---------eEEEEeecCCcceEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 002407 716 VLVTSADSRIRVVDGIDL---------VHKFKGFRNTNSQISASLTANGRYVVSASEDSYVYVWKYEAE 775 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~---------~~~~~~~~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s~ 775 (927)
+++.+..|.++-.+.... ...++.......+..+....+...|+..+.+|.+.-+.+..-
T Consensus 210 ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 210 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp EEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred EEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 888899999888773221 122222222345555444344455667777888777777653
No 370
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=34.98 E-value=6.3e+02 Score=29.86 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=57.8
Q ss_pred CEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEec-------CCceEEEEEccCCCCEEEEEECCC-------cE
Q 002407 569 DVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFSH-------SDYVTCIQFNPVDDRYFISGSLDA-------KV 632 (927)
Q Consensus 569 ~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~h-------~~~V~~v~fsp~dg~~L~sgs~Dg-------~I 632 (927)
.|..|+++|. +.|+.+...+.|..++-....-..+..+ ...|.+|+++|.+.+.|+.+.... ..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 7899999986 6777777677776665443333332221 245899999986655565554321 24
Q ss_pred EEEeCC-CCc---EEEec-c------CCCcEEEEEECCC-CCEEEEEECC
Q 002407 633 RIWSIP-ERQ---VVDWN-D------LHEMVTAACYTPD-GQGALVGSYK 670 (927)
Q Consensus 633 ~IWDl~-t~~---~v~~~-~------~~~~V~sla~spd-g~~l~tgs~D 670 (927)
.||... .++ .+... . ....+..|+++|. ...|+++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 455433 232 22211 0 0113467899885 4566666533
No 371
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=32.42 E-value=5.8e+02 Score=30.24 Aligned_cols=114 Identities=10% Similarity=0.091 Sum_probs=60.5
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC-------CCcEEEEEECC-CCCEEEEEECC-------CeE
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL-------HEMVTAACYTP-DGQGALVGSYK-------GSC 673 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~-------~~~V~sla~sp-dg~~l~tgs~D-------g~I 673 (927)
.|..|+|+|.+...|+++...+.|..++-....-..+... ...|.+|+++| +...++++... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 7999999996667777777677776665333332333221 13589999998 33445544421 123
Q ss_pred EEEE-CCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECC
Q 002407 674 HLYN-TSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSAD 722 (927)
Q Consensus 674 ~IwD-l~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~D 722 (927)
.||- ...++.-..................+..|+++|..+..|+++...
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4444 333433322221110000000012346789999776667777643
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.58 E-value=90 Score=39.61 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=31.2
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~ 648 (927)
.+.+++..+ +..++++-+.|+++|||++.+++++...+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 345555666 788999999999999999999998875443
No 373
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=28.29 E-value=8.2e+02 Score=29.07 Aligned_cols=159 Identities=8% Similarity=0.004 Sum_probs=77.0
Q ss_pred cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcE-EEecc------------CCCcEEEEEECCC-CCEEEEEECC-
Q 002407 606 HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQV-VDWND------------LHEMVTAACYTPD-GQGALVGSYK- 670 (927)
Q Consensus 606 h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~-v~~~~------------~~~~V~sla~spd-g~~l~tgs~D- 670 (927)
-...|..|.++|.+.+.++++...+.|.... +.++- ..... ....+.++++.|. ...++++...
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 4568999999997767888887777665543 22322 22221 1245899999983 3444444321
Q ss_pred ----CeEEEE-ECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEE-ECC-cceEEEEee---
Q 002407 671 ----GSCHLY-NTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVV-DGI-DLVHKFKGF--- 740 (927)
Q Consensus 671 ----g~I~Iw-Dl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~Vw-D~~-~~~~~~~~~--- 740 (927)
....|| ....++.-.....................++++|..+..++++...+.|..= |.. .........
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~S~DgG~TW~~~~~~~~~~ 177 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSS 177 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEEESSTTSSCEECTTSCCCS
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEEECCCCcCccccccCcccC
Confidence 113333 3444443333221110000000001124688888765566666665544432 211 111111000
Q ss_pred cCCcceEEEEEecCC-CEEEEEECCC
Q 002407 741 RNTNSQISASLTANG-RYVVSASEDS 765 (927)
Q Consensus 741 ~~~~~v~sv~fspdg-~~Lasgs~Dg 765 (927)
.....+..++++|.. ..|+.+..++
T Consensus 178 ~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 178 TYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCccceEEEEECCCCCCEEEEEEeCC
Confidence 011346678888753 4455555554
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=27.01 E-value=5.3e+02 Score=26.48 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=59.9
Q ss_pred cEEEEEeCCCcEEEEeCCC-------CcEEEE--EecCCceEEEEEccCCCCEEEEEECCCcEEEEeCCC-------CcE
Q 002407 579 QHLLSSSMDKTVRLWHLSS-------KTCLKI--FSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-------RQV 642 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t-------~~~~~~--~~h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-------~~~ 642 (927)
..|+..+..|.+..+.... ..-+.. +.....|..+...+ ++.+|+..+..|.++...+.. ++-
T Consensus 128 ~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~-~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG 206 (276)
T 3no0_A 128 THILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWN-GEPYLLVITAKGRVKKISHEEIPKTNRGVKG 206 (276)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEES-SCSEEEEEETTSCEEEEEGGGSCCCCTTCCC
T ss_pred CEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeC-CCCEEEEEeCCCcEEEeEHHHcccCCCCCcc
Confidence 5677777777777765431 111222 23445666666555 567888999999999887643 222
Q ss_pred EEeccCCCcEEEEEECCCCCEEEEEECCCeEEE--EECCC
Q 002407 643 VDWNDLHEMVTAACYTPDGQGALVGSYKGSCHL--YNTSE 680 (927)
Q Consensus 643 v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~I--wDl~~ 680 (927)
+......+.+..+....+...++..+.+|.+.. ++...
T Consensus 207 v~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 207 TEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred eEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 222233344554444344456777788888877 77654
No 375
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=26.13 E-value=5.8e+02 Score=26.66 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCcEEEEEeCCCcEEEEeCC---CC------cE---EEEEecCCceEEEEEccC--CCCEEEEEECCCcEEEEeCCCC--
Q 002407 577 KSQHLLSSSMDKTVRLWHLS---SK------TC---LKIFSHSDYVTCIQFNPV--DDRYFISGSLDAKVRIWSIPER-- 640 (927)
Q Consensus 577 pd~~L~Sgs~DgtV~lWDl~---t~------~~---~~~~~h~~~V~~v~fsp~--dg~~L~sgs~Dg~I~IWDl~t~-- 640 (927)
....++..+..|.++-+... .. .. .-.+.....|..+...+. +..+|+..+..|.++...+..-
T Consensus 57 ~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~ 136 (312)
T 1suu_A 57 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKA 136 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhc
Confidence 34677777888887666543 11 11 001223344555533321 3567888899999998877432
Q ss_pred -----cEEEeccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEEEEEcCCCCcE
Q 002407 641 -----QVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSE 715 (927)
Q Consensus 641 -----~~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~ 715 (927)
.....+...+.+..+........++..+.+|.+..+....-........-....+. .....|.++....++. .
T Consensus 137 ~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L-~~~d~vv~~~~v~~~~-~ 214 (312)
T 1suu_A 137 VKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL-KEGDLFVKVLSVKENP-Y 214 (312)
T ss_dssp ----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC-CTTCCEEEEEECTTCS-E
T ss_pred cCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe-CCCCEEEEEEEECCCC-e
Confidence 11112222456666665555678899999999999987642221110000000011 2345566666554444 6
Q ss_pred EEEEECCCcEEEEECCcc---------eEEEEee-cCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 716 VLVTSADSRIRVVDGIDL---------VHKFKGF-RNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 716 Llsgs~Dg~I~VwD~~~~---------~~~~~~~-~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
+++.+..|..+....... ...+... .....+..+..-.+...|+..+..|.+.-.....
T Consensus 215 l~~vt~~G~~kr~~~~e~~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 215 LLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEEEECCCceEEEEHHHhcccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 888899999888874221 2222211 1223344432233444555556667554445443
No 376
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=23.69 E-value=9.9e+02 Score=28.47 Aligned_cols=156 Identities=8% Similarity=0.031 Sum_probs=81.1
Q ss_pred CCCEEEEEecCC--cEEEEEeCCCcEEEEeCCCCcEEEEEe-c-------CCceEEEEEccCCCCEEEEEECCCc----E
Q 002407 567 LDDVLDLSWSKS--QHLLSSSMDKTVRLWHLSSKTCLKIFS-H-------SDYVTCIQFNPVDDRYFISGSLDAK----V 632 (927)
Q Consensus 567 ~~~V~~l~~spd--~~L~Sgs~DgtV~lWDl~t~~~~~~~~-h-------~~~V~~v~fsp~dg~~L~sgs~Dg~----I 632 (927)
.+.|.+|+++|. +.++.+...+.|...+=. ++.-..+. + ...|.+|++.|.+.+.++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 458999999986 678888877877666533 33222222 1 2369999999855556666553321 2
Q ss_pred EEEe-CCCCcEEEeccC----------CCcEEEEEECCC-CCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCC
Q 002407 633 RIWS-IPERQVVDWNDL----------HEMVTAACYTPD-GQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQ 700 (927)
Q Consensus 633 ~IWD-l~t~~~v~~~~~----------~~~V~sla~spd-g~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~ 700 (927)
.||- .+.++--..... ...+..+++.|. ...++++...+.|. .....++.-..... ... .....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~-~~~--~~~~~ 168 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTS-IPD--AFTNG 168 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETT-SCC--CCSTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCcc-Ccc--ccCCC
Confidence 3333 333332111110 113556788774 34566665444332 23333333222211 000 00112
Q ss_pred CCeEEEEEcCCCCcEEEEEECC-CcEEE
Q 002407 701 RKITGFQFAPGSSSEVLVTSAD-SRIRV 727 (927)
Q Consensus 701 ~~Vtsl~fspdg~~~Llsgs~D-g~I~V 727 (927)
..+..+.++|.....++++..+ +.|..
T Consensus 169 ~~~~~i~~~p~~~~~~~~~~~~~~~v~~ 196 (789)
T 1sqj_A 169 IGYTSVIFDPERNGTIYASATAPQGMYV 196 (789)
T ss_dssp TCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred CCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence 4578899998655566666654 44443
No 377
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=23.26 E-value=7.1e+02 Score=26.62 Aligned_cols=190 Identities=11% Similarity=0.123 Sum_probs=99.2
Q ss_pred cEEEEEeCCCcEEEEeCCCC--------cEE---EEEe--cCCceEEEEEccCCCCEEEEEECCCcEEEEeCCCC-----
Q 002407 579 QHLLSSSMDKTVRLWHLSSK--------TCL---KIFS--HSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPER----- 640 (927)
Q Consensus 579 ~~L~Sgs~DgtV~lWDl~t~--------~~~---~~~~--h~~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~----- 640 (927)
...+.-..||.|+.|-.... ... ..+. ....+..++++. ...+.+....||.|..|-....
T Consensus 63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 34555567888888854321 111 1111 233455667766 6677778889999999965321
Q ss_pred -------cEEEeccCC-CcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeee-e--cccccccccccCCCCCeEEEEEc
Q 002407 641 -------QVVDWNDLH-EMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQ-K--SPINLQNKKKRSHQRKITGFQFA 709 (927)
Q Consensus 641 -------~~v~~~~~~-~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~-~--~~i~~~~~~~~~h~~~Vtsl~fs 709 (927)
......... ..|..++.. ..+.++-..+|.|+.|-....-.+- . .....+..........|..++..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 111111111 246555543 4456666789999999754311000 0 00000000001223457777665
Q ss_pred CCCCcEEEEEECCCcEEEEECCc----------ceEEEEee--cCCcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 710 PGSSSEVLVTSADSRIRVVDGID----------LVHKFKGF--RNTNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 710 pdg~~~Llsgs~Dg~I~VwD~~~----------~~~~~~~~--~~~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
... ...++-..++.|+.|-... ........ .....+..++. ...+.+.-..||.|+.|=...
T Consensus 220 ~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~ 293 (389)
T 3kci_A 220 SGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGD 293 (389)
T ss_dssp CSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCG
T ss_pred CCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCC
Confidence 422 3667778899999996221 11111111 11223555543 344555667899999998754
No 378
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=22.35 E-value=7.5e+02 Score=26.61 Aligned_cols=114 Identities=6% Similarity=-0.020 Sum_probs=63.6
Q ss_pred CceEEEEEccCCCCEEEEEECCCcEEEEeCCC-Cc------------EEEeccCCCcEEEEEECCCCCEEEEEECCCeEE
Q 002407 608 DYVTCIQFNPVDDRYFISGSLDAKVRIWSIPE-RQ------------VVDWNDLHEMVTAACYTPDGQGALVGSYKGSCH 674 (927)
Q Consensus 608 ~~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t-~~------------~v~~~~~~~~V~sla~spdg~~l~tgs~Dg~I~ 674 (927)
..|..|+. ...+.+....||.|..|-... ++ ..........|..|+.. ..+.++-..+|.|+
T Consensus 75 ~~v~~va~---G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~ 149 (423)
T 3mvd_K 75 PDAVDISA---GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVF 149 (423)
T ss_dssp SSEEEEEE---CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCceEEee---CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEE
Confidence 34666665 556777778899999996533 11 01112223456666554 34555667899999
Q ss_pred EEEC--C-CCeeeeecccccccccccCCCCCeEEEEEcCCCCcEEEEEECCCcEEEEE
Q 002407 675 LYNT--S-ENKLQQKSPINLQNKKKRSHQRKITGFQFAPGSSSEVLVTSADSRIRVVD 729 (927)
Q Consensus 675 IwDl--~-~~~~~~~~~i~~~~~~~~~h~~~Vtsl~fspdg~~~Llsgs~Dg~I~VwD 729 (927)
.|-. . .+++-..................|..|+... ...++-..+|.|+.|-
T Consensus 150 ~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG 204 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA---DHLVILTTAGKVFTVG 204 (423)
T ss_dssp EEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS---SEEEEEETTSCEEEEE
T ss_pred EEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC---CeEEEEecCCeEEEee
Confidence 9975 2 2332111000000000112334577777644 3677778899999995
No 379
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=22.32 E-value=29 Score=34.28 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHhCCCC
Q 002407 77 ISVSERRSRLLREMGLSH 94 (927)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (927)
+|=|-||+.||++||+.-
T Consensus 8 AS~SPrR~eLL~~~gi~f 25 (189)
T 1ex2_A 8 ASQSPRRKELLDLLQLPY 25 (189)
T ss_dssp CCCCHHHHHHHHTTCCCC
T ss_pred ECCCHHHHHHHHhCCCCe
Confidence 577899999999999954
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.84 E-value=1.1e+02 Score=36.64 Aligned_cols=37 Identities=22% Similarity=0.609 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCCEEEEEECCCcEEEEeCCCCcEEEeccC
Q 002407 609 YVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWNDL 648 (927)
Q Consensus 609 ~V~~v~fsp~dg~~L~sgs~Dg~I~IWDl~t~~~v~~~~~ 648 (927)
.|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 577999999999999999999998876554
No 381
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=20.64 E-value=8.1e+02 Score=26.36 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=109.3
Q ss_pred CCEEEEEecCC-cEEEEEeCCCcEEEEe---CCC------CcEEE---EEecCCceEEEEEcc--CCCCEEEEEECCCcE
Q 002407 568 DDVLDLSWSKS-QHLLSSSMDKTVRLWH---LSS------KTCLK---IFSHSDYVTCIQFNP--VDDRYFISGSLDAKV 632 (927)
Q Consensus 568 ~~V~~l~~spd-~~L~Sgs~DgtV~lWD---l~t------~~~~~---~~~h~~~V~~v~fsp--~dg~~L~sgs~Dg~I 632 (927)
+.+..+..... ..|+..+..|.++-+. +.. |..+. .+.....|..+.... ..+.+|+.++..|.+
T Consensus 46 D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~v 125 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTV 125 (370)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEE
T ss_pred CEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeE
Confidence 34444444333 6677777777765554 321 22111 122345566554432 135689999999999
Q ss_pred EEEeCCCC-----cEEEe--ccCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCCeeeeecccccccccccCCCCCeEE
Q 002407 633 RIWSIPER-----QVVDW--NDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSPINLQNKKKRSHQRKITG 705 (927)
Q Consensus 633 ~IWDl~t~-----~~v~~--~~~~~~V~sla~spdg~~l~tgs~Dg~I~IwDl~~~~~~~~~~i~~~~~~~~~h~~~Vts 705 (927)
+...+..- .-+.. +...+.+..+........++..+..|.+..+....-........-....+ ......|.+
T Consensus 126 Krt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~-L~~~d~Vv~ 204 (370)
T 3l6v_A 126 KKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIR-LAKGEEVVS 204 (370)
T ss_dssp EEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-CCTTCCEEE
T ss_pred EEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEE-eCCCCEEEE
Confidence 98876431 11111 22234555555555666888899999988887654222211100000000 123345555
Q ss_pred EEEcCC----------------------------------CCcEEEEEECCCcEEEEECCc---------ceEEEEeecC
Q 002407 706 FQFAPG----------------------------------SSSEVLVTSADSRIRVVDGID---------LVHKFKGFRN 742 (927)
Q Consensus 706 l~fspd----------------------------------g~~~Llsgs~Dg~I~VwD~~~---------~~~~~~~~~~ 742 (927)
+...+. ....|++.+..|..+...... .+..++....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~ 284 (370)
T 3l6v_A 205 LIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTER 284 (370)
T ss_dssp EEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTT
T ss_pred EEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCC
Confidence 554441 223788889999988877321 2222222222
Q ss_pred CcceEEEEEecCCCEEEEEECCCcEEEEECCC
Q 002407 743 TNSQISASLTANGRYVVSASEDSYVYVWKYEA 774 (927)
Q Consensus 743 ~~~v~sv~fspdg~~Lasgs~Dg~I~IWdl~s 774 (927)
...+..+.+..+...|+..+..|.+.-..+..
T Consensus 285 ~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 285 NGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp TCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 34555554444555666667778777666654
No 382
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=20.45 E-value=1.2e+02 Score=36.26 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=30.7
Q ss_pred CCEEEEEecCCcEEEEEeCCCcEEEEeCCCCcEEEEEec
Q 002407 568 DDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKTCLKIFSH 606 (927)
Q Consensus 568 ~~V~~l~~spd~~L~Sgs~DgtV~lWDl~t~~~~~~~~h 606 (927)
..|.++.+ ++.+|++-+.|+++|+|++.+++++....-
T Consensus 222 ~~Is~~~~-~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF-HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE-TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc-CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555554 468999999999999999999999887654
Done!