BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002408
(927 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 124/184 (67%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS 382
NLGNT FMNSALQCL +T L YFL D Y EIN +NPLGM GE+A A+ +L++++WS
Sbjct: 13 NLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSG 72
Query: 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGG 442
A VAPR FK ++ RFAPQFSGY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ G
Sbjct: 73 RDAHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANG 132
Query: 443 RPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502
RPD VA E W+NH+ RNDS+IVD F G +KSTLVCP C+KVS+TFDPF YLTLPLP
Sbjct: 133 RPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKK 192
Query: 503 TRTM 506
R M
Sbjct: 193 DRVM 196
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 112/154 (72%)
Query: 756 KKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRF 815
+K ++ ++L C++ F T E LG D WYCP CK+H+QATKK DLW LP +LV HLKRF
Sbjct: 204 QKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRF 263
Query: 816 SYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKL 875
SY+RY ++KLDT V FPI L++S+++ + YVYDL A+SNHYG +G GHYTAYAK
Sbjct: 264 SYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKN 323
Query: 876 IDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
+WY+FDDS+VS SE I T AAYVLFY+R
Sbjct: 324 KLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 179 bits (455), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 122/185 (65%), Gaps = 1/185 (0%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWS 381
+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A FG +++ LW+
Sbjct: 66 RNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWT 125
Query: 382 SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSG 441
++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + + +++
Sbjct: 126 GQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENND 185
Query: 442 GRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501
D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+LPL ST
Sbjct: 186 HLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLAST 245
Query: 502 VTRTM 506
T+
Sbjct: 246 SKCTL 250
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+L CL F EE L ++ +YC C+ R + KK+++W LP VL+ HLKRFSY K
Sbjct: 249 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 308
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 883
KL T V+FP+ NLDLS+Y+ Y+LF++SNHYGGL GGHYTAY K RW+
Sbjct: 309 KLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 368
Query: 884 FDDSHVSPVSEGDIKTSAAYVLFY 907
FDD VS +S +K+SAAY+LFY
Sbjct: 369 FDDHEVSDISVSSVKSSAAYILFY 392
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 172 bits (435), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 118/185 (63%), Gaps = 1/185 (0%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWS 381
+NLGNTC+ NS LQCL + P LA YF + Y D+IN N LG GE+A FG + + LW+
Sbjct: 66 RNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIXKALWT 125
Query: 382 SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSG 441
++P+ FK + + QF+GY+Q DSQELL FL DGLHEDLN+ + + +++
Sbjct: 126 GQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLXDGLHEDLNKADNRKRYKEENND 185
Query: 442 GRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501
D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ F YL+LPL ST
Sbjct: 186 HLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFXYLSLPLAST 245
Query: 502 VTRTM 506
T+
Sbjct: 246 SKCTL 250
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+L CL F EE L ++ +YC C+ R + KK+++W LP VL+ HLKRFSY K
Sbjct: 249 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 308
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 883
KL T V+FP+ NLDLS+Y+ Y+LF++SNHYGGL GGHYTAY K RW+
Sbjct: 309 KLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 368
Query: 884 FDDSHVSPVSEGDIKTSAAYVLFY 907
FDD VS +S +K+SAAY+LFY
Sbjct: 369 FDDHEVSDISVSSVKSSAAYILFY 392
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW- 380
+NLGNTCFMNS LQCL +T +L Y L Y +++ + H L F L++ +W
Sbjct: 13 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS--NAHTALVEEFAKLIQTIWT 70
Query: 381 SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDS 440
SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P ++
Sbjct: 71 SSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL 130
Query: 441 GGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPL 498
PD+E + W+ + R DS I D+F GQ KS+L C C S FDPF L+LP+
Sbjct: 131 DHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPI 188
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 177 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRC 228
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 229 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF-ASENTNHAVYNLY 287
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTK 915
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY ++
Sbjct: 288 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSR 347
Query: 916 AEMA 919
A
Sbjct: 348 MAAA 351
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW- 380
+NLGNTCFMNS LQCL +T +L Y L Y +++ + H L F L++ +W
Sbjct: 32 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS--NAHTALVEEFAKLIQTIWT 89
Query: 381 SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDS 440
SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P ++
Sbjct: 90 SSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL 149
Query: 441 GGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPL 498
PD+E + W+ + R DS I D+F GQ KS+L C C S FDPF L+LP+
Sbjct: 150 DHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPI 207
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 196 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRC 247
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 248 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF-ASENTNHAVYNLY 306
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 307 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 358
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 107/178 (60%), Gaps = 4/178 (2%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW- 380
+NLGNTCFMNS LQCL +T +L Y L Y +++ + H L F L++ +W
Sbjct: 39 RNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS--NAHTALVEEFAKLIQTIWT 96
Query: 381 SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDS 440
SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P ++
Sbjct: 97 SSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL 156
Query: 441 GGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPL 498
PD+E + W+ + R DS I D+F GQ KS+L C C S FDPF L+LP+
Sbjct: 157 DHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPI 214
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D C +C+ ++
Sbjct: 203 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDAAPTCCRCRGRKRC 254
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 255 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF-ASENTNHAVYNLY 313
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 314 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 365
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 106/178 (59%), Gaps = 4/178 (2%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW- 380
+NLGNT FMNS LQCL +T +L Y L Y +++ + H L F L++ +W
Sbjct: 13 RNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS--NAHTALVEEFAKLIQTIWT 70
Query: 381 SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDS 440
SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P ++
Sbjct: 71 SSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENL 130
Query: 441 GGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPL 498
PD+E + W+ + R DS I D+F GQ KS+L C C S FDPF L+LP+
Sbjct: 131 DHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPI 188
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 177 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRC 228
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 229 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREF-ASENTNHAVYNLY 287
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 288 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 339
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 100/194 (51%), Gaps = 20/194 (10%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLLRKLWS 381
+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++ LW
Sbjct: 26 RNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVIGALWH 82
Query: 382 SGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK-------- 432
AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 83 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG 142
Query: 433 PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVS 485
P GG D++ AN WK + R DS IVD+F GQ KS L C C S
Sbjct: 143 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS 202
Query: 486 ITFDPFMYLTLPLP 499
TF+ F L+LP+P
Sbjct: 203 TTFEVFCDLSLPIP 216
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 215 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 269
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 270 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 328
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 329 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 367
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 100/194 (51%), Gaps = 20/194 (10%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLLRKLWS 381
+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++ LW
Sbjct: 7 RNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVIGALWH 63
Query: 382 SGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK-------- 432
AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 64 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG 123
Query: 433 PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVS 485
P GG D++ AN WK + R DS IVD+F GQ KS L C C S
Sbjct: 124 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS 183
Query: 486 ITFDPFMYLTLPLP 499
TF+ F L+LP+P
Sbjct: 184 TTFEVFCDLSLPIP 197
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 196 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 250
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 251 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 309
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 310 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 348
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 100/194 (51%), Gaps = 20/194 (10%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLLRKLWS 381
+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++ LW
Sbjct: 20 RNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVIGALWH 76
Query: 382 SGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK-------- 432
AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 77 PDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANG 136
Query: 433 PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVS 485
P GG D++ AN WK + R DS IVD+F GQ KS L C C S
Sbjct: 137 PVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQACGYRS 196
Query: 486 ITFDPFMYLTLPLP 499
TF+ F L+LP+P
Sbjct: 197 TTFEVFCDLSLPIP 210
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 209 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 263
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 264 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 322
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 323 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 361
>pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains
pdb|3PV1|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Domains
Length = 225
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 31/243 (12%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 3 MAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD----- 50
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+P +
Sbjct: 51 --SWDKYQM----GDQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILLPTEG 98
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAS 185
W KL WY +G + RK++ +G+ V +VEV+ LKL ++ + + V R KA
Sbjct: 99 WNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKAD 158
Query: 186 TRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243
T EK + K+ I EK R+W+ + + PL+ D T+ DA L Q +++E +
Sbjct: 159 TIDTIEKEIRKIFSIPDEKETRLWNKY-MSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 217
Query: 244 DNG 246
++G
Sbjct: 218 EDG 220
>pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15
Length = 230
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 127/243 (52%), Gaps = 31/243 (12%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 1 MAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD----- 48
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+P +
Sbjct: 49 --SWDKYQM----GDQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILLPTEG 96
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAS 185
W KL WY +G + RK++ +G+ V +VEV+ LKL ++ + + V R KA
Sbjct: 97 WNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKAD 156
Query: 186 TRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243
T EK + K+ I EK R+W+ + + PL+ D T+ DA L Q +++E +
Sbjct: 157 TIDTIEKEIRKIFSIPDEKETRLWNKY-MSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 215
Query: 244 DNG 246
++G
Sbjct: 216 EDG 218
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 765 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN- 823
L+ CLD+F +E L D ++C +C + A K+L + LP VLV LKRF + N
Sbjct: 316 LYECLDSFHKKEQL-KDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR 374
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESY---------VYDLFAISNHYGGLGGGHYTAYAK 874
KLD F+ FP L++ Y +K+ + + +Y+L I +H G + GHY A+ K
Sbjct: 375 KLDDFIEFPTY-LNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK 433
Query: 875 LIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
I +W+ F+DS VS +S+ ++ AY+LFY
Sbjct: 434 -ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 465
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGE--LALAFGDLLRKLW- 380
N+G+TCFM+S LQCL+H P YF+ +I++ N + + A ++ +L+
Sbjct: 141 NMGSTCFMSSILQCLIHNP----YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYG 196
Query: 381 --------SSGRAAVAPRAFKGKLA---RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRV 429
SS + F L + +GY+Q D+ E F+++ +H+
Sbjct: 197 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ----- 251
Query: 430 KQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVS-ITF 488
Y+ D A E + + + + ++ VF+G +S++VCP C S T
Sbjct: 252 ---SYV--------LDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTI 300
Query: 489 DPFMYLTLPL 498
DPF+ L+L +
Sbjct: 301 DPFLDLSLDI 310
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 765 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN- 823
L+ CLD+F +E L D ++C +C + A K+L + LP VLV LKRF + N
Sbjct: 321 LYECLDSFHKKEQL-KDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR 379
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESY---------VYDLFAISNHYGGLGGGHYTAYAK 874
KLD F+ FP L++ Y +K+ + + +Y+L I +H G + GHY A+ K
Sbjct: 380 KLDDFIEFPTY-LNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK 438
Query: 875 LIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
I +W+ F+DS VS +S+ ++ AY+LFY
Sbjct: 439 -ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGE--LALAFGDLLRKLW- 380
N+GNTCFM+S LQCL+H P YF+ +I++ N + + A ++ +L+
Sbjct: 146 NMGNTCFMSSILQCLIHNP----YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYG 201
Query: 381 --------SSGRAAVAPRAFKGKLA---RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRV 429
SS + F L + +GY+Q D+ E F+++ +H+
Sbjct: 202 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ----- 256
Query: 430 KQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVS-ITF 488
Y+ D A E + + + + ++ VF+G +S++VCP C S T
Sbjct: 257 ---SYV--------LDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTI 305
Query: 489 DPFMYLTLPL 498
DPF+ L+L +
Sbjct: 306 DPFLDLSLDI 315
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 765 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN- 823
L+ CLD+F +E L D ++C +C + A K+L + LP VLV LKRF + N
Sbjct: 321 LYECLDSFHKKEQL-KDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNR 379
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESY---------VYDLFAISNHYGGLGGGHYTAYAK 874
KLD F+ FP L++ Y +K+ + + +Y+L I +H G + GHY A+ K
Sbjct: 380 KLDDFIEFPTY-LNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK 438
Query: 875 LIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
I +W+ F+DS VS +S+ ++ AY+LFY
Sbjct: 439 -ISGGQWFKFNDSMVSSISQEEVLKEQAYLLFY 470
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGE--LALAFGDLLRKLW- 380
N+G+TCFM+S LQCL+H P YF+ +I++ N + + A ++ +L+
Sbjct: 146 NMGSTCFMSSILQCLIHNP----YFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYG 201
Query: 381 --------SSGRAAVAPRAFKGKLA---RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRV 429
SS + F L + +GY+Q D+ E F+++ +H+
Sbjct: 202 ALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ----- 256
Query: 430 KQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVS-ITF 488
Y+ D A E + + + + ++ VF+G +S++VCP C S T
Sbjct: 257 ---SYV--------LDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTI 305
Query: 489 DPFMYLTLPL 498
DPF+ L+L +
Sbjct: 306 DPFLDLSLDI 315
>pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15
Length = 237
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 116/213 (54%), Gaps = 24/213 (11%)
Query: 40 LKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99
L++G+ ++L+ +RW++ W++YV D S+D M + PGPIDNS +++
Sbjct: 38 LRKGDTWYLVDSRWFKQWKKYVGFD-------SWDKYQM----GDQNVYPGPIDNSGLLK 86
Query: 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---KGGPALPRKMISEGI-VNE 155
+G+ S ++ +L + DY+L+P + W KL WY +G + RK++ +G+ V
Sbjct: 87 DGDAQS------LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKH 140
Query: 156 KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQ 213
+VEV+ LKL ++ + + V R KA T EK + K+ I EK R+W+ +
Sbjct: 141 CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKY-MS 199
Query: 214 RSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 246
+ PL+ D T+ DA L Q +++E + ++G
Sbjct: 200 NTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 232
>pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
pdb|4A3O|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
Length = 220
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 116/213 (54%), Gaps = 24/213 (11%)
Query: 40 LKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99
L++G+ ++L+ +RW++ W++YV D S+D M + PGPIDNS +++
Sbjct: 21 LRKGDTWYLVDSRWFKQWKKYVGFD-------SWDKYQM----GDQNVYPGPIDNSGLLK 69
Query: 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---KGGPALPRKMISEGI-VNE 155
+G+ S ++ +L + DY+L+P + W KL WY +G + RK++ +G+ V
Sbjct: 70 DGDAQS------LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKH 123
Query: 156 KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQ 213
+VEV+ LKL ++ + + V R KA T EK + K+ I EK R+W+ +
Sbjct: 124 CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKY-MS 182
Query: 214 RSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 246
+ PL+ D T+ DA L Q +++E + ++G
Sbjct: 183 NTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 215
>pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant
Length = 217
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 115/212 (54%), Gaps = 25/212 (11%)
Query: 40 LKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99
L++G+ ++L+ +RW++ W++YV D S+D M + PGPIDNS +++
Sbjct: 21 LRKGDTWYLVDSRWFKQWKKYVGFD-------SWDKYQM----GDQNVYPGPIDNSGLLK 69
Query: 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---KGGPALPRKMISEGIVNEK 156
+G+ S ++ +L + DY+L+P + W KL WY +G + RK++ +G+
Sbjct: 70 DGDAQS------LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFC-- 121
Query: 157 RVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQR 214
+VEV+ LKL ++ + + V R KA T EK + K+ I EK R+W+ +
Sbjct: 122 KVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKY-MSN 180
Query: 215 STSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 246
+ PL+ D T+ DA L Q +++E + ++G
Sbjct: 181 TFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212
>pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
pdb|3JYU|B Chain B, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
Length = 231
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 111/231 (48%), Gaps = 25/231 (10%)
Query: 22 PDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGV 81
PD E Q + L L+ G ++LI +RW++ W++YV FDS V
Sbjct: 13 PDVETQKTE-LGALXGTTLQRGAQWYLIDSRWFKQWKKYV----------GFDSWDXYNV 61
Query: 82 SSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---K 138
PGPIDNS + S+ + ++ +L + DYVLVP + W KL WY +
Sbjct: 62 GEHNL-FPGPIDNSGLF------SDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVE 114
Query: 139 GGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKL 196
G + RK++ G+ V +VEV+ L LKL ++ D + + KA T EK KL
Sbjct: 115 GQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEXRKL 174
Query: 197 RGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNG 246
I E+ R+W+ + + L D T+ DA L Q +++E Q ++G
Sbjct: 175 FNIPAERETRLWNKY-XSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224
>pdb|3LMN|A Chain A, Oligomeric Structure Of The Dusp Domain Of Human Usp15
pdb|3LMN|B Chain B, Oligomeric Structure Of The Dusp Domain Of Human Usp15
Length = 135
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 28/156 (17%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 3 MAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD----- 50
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+P +
Sbjct: 51 --SWDKYQMG----DQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILLPTEG 98
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVF 161
W KL WY +G + RK++ +G+ V +VEV+
Sbjct: 99 WNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVY 134
>pdb|1W6V|A Chain A, Solution Structure Of The Dusp Domain Of Husp15
Length = 141
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 27/148 (18%)
Query: 6 SSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDE 65
S +M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 18 GSHMMAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD- 69
Query: 66 PSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLV 125
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+
Sbjct: 70 ------SWDKYQMG----DQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILL 113
Query: 126 PQQVWEKLFCWY---KGGPALPRKMISE 150
P + W KL WY +G + RK++ +
Sbjct: 114 PTEGWNKLVSWYTLMEGQEPIARKVVEQ 141
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 25/120 (20%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFL-----------GDYSDEINTENPLGMHGELALA 371
+NLGN+C++NS +Q L PD + ++ D + + +T+ HG L+
Sbjct: 348 RNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLS-- 405
Query: 372 FGDLLRKLWSSG-----------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLD 420
G+ + + SG + +APR FK + + P+FS Q D+QE L++
Sbjct: 406 -GEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLIN 464
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEH--RQATKKLDLWMLPDVLVFHLKRFSYSRYL 821
++F ++ E L D+ + EH ++A K + LP VL L RF Y
Sbjct: 152 NIFESFVDYVAVEQLDGDNKY---DAGEHGLQEAEKGVKFLTLPPVLHLQLXRFXYDPQT 208
Query: 822 KN--KLDTFVNFPILNLDLSKYMKS---KDGESYVYDLFAISNHYGGLGGGHYTAYAKLI 876
K++ FP L L ++++ KD +Y+ L A+ H G GGHY Y
Sbjct: 209 DQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYI--LHAVLVHSGDNHGGHYVVYLNPK 265
Query: 877 DENRWYHFDDSHVS 890
+ +W FDD VS
Sbjct: 266 GDGKWCKFDDDVVS 279
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 323 QNLGNTCFMNSALQCLVHTPDL--AQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW 380
+N G TC+ NS LQ L T L A Y D+ + PL L++++
Sbjct: 10 KNQGATCYXNSLLQTLFFTNQLRKAVYXXPTEGDDSSKSVPLA------------LQRVF 57
Query: 381 SSGRAAVAPRAFKGKLARFA-PQFSGYNQHDSQELLAFLLDGL 422
+ + P K F + QHD QEL LLD +
Sbjct: 58 YELQHSDKPVGTKKLTKSFGWETLDSFXQHDVQELCRVLLDNV 100
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEH--RQATKKLDLWMLPDVLVFHLKRFSYSRYL 821
++F ++ E L D+ + EH ++A K + LP VL L RF Y
Sbjct: 152 NIFESFVDYVAVEQLDGDNKY---DAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQT 208
Query: 822 KN--KLDTFVNFPILNLDLSKYMKS---KDGESYVYDLFAISNHYGGLGGGHYTAYAKLI 876
K++ FP L L ++++ KD +Y+ L A+ H G GGHY Y
Sbjct: 209 DQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYI--LHAVLVHSGDNHGGHYVVYLNPK 265
Query: 877 DENRWYHFDDSHVS 890
+ +W FDD VS
Sbjct: 266 GDGKWCKFDDDVVS 279
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 323 QNLGNTCFMNSALQCLVHTPDL--AQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW 380
+N G TC+MNS LQ L T L A Y + D+ + PL L++++
Sbjct: 10 KNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLA------------LQRVF 57
Query: 381 SSGRAAVAPRAFKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLN------------ 427
+ + P K F + QHD QEL LLD + +
Sbjct: 58 YELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLF 117
Query: 428 RVKQKPYIEMKDSGGRPD 445
R K YI+ K+ R D
Sbjct: 118 RGKMVSYIQCKEVDYRSD 135
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 849 SYVYDLFAISNHYGGLG-GGHYTAYAK-LIDENRWYHFDDSHVSPVSEGDIKTSAA 902
S VY+L + H G GHY A+ + +DEN+WY F+D VS V + I++ A
Sbjct: 343 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAG 398
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 323 QNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLG----MHGELALAFGDLLRK 378
+N GNTC++N+ LQ L DL L +Y+ N +H ++ +
Sbjct: 28 KNXGNTCYLNATLQALYRVNDLRDXIL-NYNPSQGVSNSGAQDEEIHKQIVIEXKRCFEN 86
Query: 379 LWSSGRAAVAPRAFKGKLARFAPQFSG-------YNQHDSQELLAFLL 419
L + +V P L + PQF+ Y Q D++EL L
Sbjct: 87 LQNKSFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLF 134
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEH--RQATKKLDLWMLPDVLVFHLKRFSYSRYL 821
++F ++ E L D+ + EH ++A K + LP VL L RF Y
Sbjct: 321 NIFESFVDYVAVEQLDGDNKY---DAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQT 377
Query: 822 KN--KLDTFVNFPILNLDLSKYMKSKDGESYV-YDLFAISNHYGGLGGGHYTAYAKLIDE 878
K++ FP L L ++++ D + Y L A+ H G GGHY Y +
Sbjct: 378 DQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGD 436
Query: 879 NRWYHFDDSHVS 890
+W FDD VS
Sbjct: 437 GKWCKFDDDVVS 448
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 27/138 (19%)
Query: 323 QNLGNTCFMNSALQCLVHTPDL--AQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW 380
+N G TC+MNS LQ L T L A Y + D+ + PL L++++
Sbjct: 179 KNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLA------------LQRVF 226
Query: 381 SSGRAAVAPRAFKGKLARFAPQ-FSGYNQHDSQELLAFLLDGLHEDLN------------ 427
+ + P K F + + QHD QEL LLD + +
Sbjct: 227 YELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLF 286
Query: 428 RVKQKPYIEMKDSGGRPD 445
R K YI+ K+ R D
Sbjct: 287 RGKMVSYIQCKEVDYRSD 304
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG 383
NLGNTC+MN+ +QC+ P+L L Y+ + + + A DL +
Sbjct: 19 NLGNTCYMNATVQCIRSVPELKDA-LKRYAGALRASGEMASAQYITAALRDLFDSM-DKT 76
Query: 384 RAAVAPRAFKGKLARFAPQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEM 437
+++ P L PQF+ Y Q D+ E ++ L + L ++
Sbjct: 77 SSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIED------ 130
Query: 438 KDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSIT 487
DS D A+ ++ SLI F ++++T+ C + +T
Sbjct: 131 -DSVKETDSSSAS---AATPSKKKSLIDQFFGVEFETTMKCTESEEEEVT 176
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 852 YDLFAISNHYG-GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSA-------AY 903
YDL A+ H G GHY ++ K ++ W FDD VS V+ DI + AY
Sbjct: 328 YDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAY 386
Query: 904 VLFY--RRVK 911
VL Y RRV+
Sbjct: 387 VLLYGPRRVE 396
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 23/130 (17%)
Query: 453 WKNHKARNDSLIVDVFQG----QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTV 508
+K HK RND L++ QG Q+KS V + P L P S + +T
Sbjct: 38 YKEHKLRNDGLVITTNQGNIRLQFKSEAAIEVLYRADSKQLPSFALAQP-ESAIKAQLTE 96
Query: 509 TVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQI------F 562
T + SG G I A D LLLAE Q+ F
Sbjct: 97 TENHLQFSG------------GTLTARIQKRPFAISYYRDSELLLAEESGFQVNTDKINF 144
Query: 563 RFFENPAELI 572
RF+ +P E I
Sbjct: 145 RFYLSPGEKI 154
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 821 LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDE 878
++N+LD FV + +L LS +K++ G ++ YD+ + LGG Y +LIDE
Sbjct: 17 IRNRLDYFVELGVTHLYLSPVLKARPGSTHGYDVVDYNTINDELGGEE--EYIRLIDE 72
>pdb|1YN4|A Chain A, Crystal Structures Of Eap Domains From Staphylococcus
Aureus Reveal An Unexpected Homology To Bacterial
Superantigens
Length = 99
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 678 NESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELY 737
N+ V E++ EL+ Q +T E+I++ + L G V L DD
Sbjct: 27 NKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNSI 86
Query: 738 DPSYIKDLPVVHK 750
DPS IK + +V K
Sbjct: 87 DPSTIKQIQIVVK 99
>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|B Chain B, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|C Chain C, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
pdb|2B83|D Chain D, A Single Amino Acid Substitution In The Clostridium
Beijerinckii Alcohol Dehydrogenase Is Critical For
Thermostabilization
Length = 351
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 193 VCKLRGIEQEK--ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE-------VQV 243
+ KL IE+E+ A +D + + SP T+ + L ++++L V+V
Sbjct: 9 INKLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEV 68
Query: 244 DNGISMDSTGNDLALVP-IEPSRSSLTI-AGGPALSNGHTTGYRFNQYPGSSFGSTF 298
+ + D D +VP P SL + AG P SNG G++F+ + FG F
Sbjct: 69 GSEVK-DFKPGDRVIVPCTTPDWRSLEVQAGFPQHSNGMLAGWKFSNFKDGVFGEYF 124
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 222 SDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSN 278
+D + +L++D DIL+ ++N I+ ++ N A + +E + T+ G LS+
Sbjct: 282 NDTITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSD 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,054,371
Number of Sequences: 62578
Number of extensions: 1277352
Number of successful extensions: 2822
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2701
Number of HSP's gapped (non-prelim): 67
length of query: 927
length of database: 14,973,337
effective HSP length: 108
effective length of query: 819
effective length of database: 8,214,913
effective search space: 6728013747
effective search space used: 6728013747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)