BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002408
(927 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana
GN=UBP10 PE=2 SV=2
Length = 923
Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/928 (62%), Positives = 719/928 (77%), Gaps = 27/928 (2%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG LP TP+EE++IV +L ++S+ +LK+GNLYF+IS RWY SW+ Y
Sbjct: 1 MTIPNSD-FMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S + S G SS+ A RPGPIDN DII++ S+ +D ++RR L EG+
Sbjct: 60 V---ENSANECS------TGESSE-APRPGPIDNHDIIES---DSDINDPQLRRLLVEGE 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVP+QVW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239
L K+AS R+LYEKVC + G+ QEKA IWDYF+K+++ +S ++L+++ L MDQDIL+
Sbjct: 167 LGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYKSLEESSLHMDQDILV 226
Query: 240 EVQ---VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGS 296
EV + +M STGN+LALVP+EPSRS +TIAGGP LSNGH+T F+ +P
Sbjct: 227 EVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFP------ 280
Query: 297 TFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEI 356
DDG DS + KGEKGGLAGL NLGNTCFMNSALQCL HTP + +YFL DYSD+I
Sbjct: 281 RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDI 340
Query: 357 NTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
N +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAPQFSGYNQHDSQELLA
Sbjct: 341 NRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLA 400
Query: 417 FLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTL 476
FLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKSTL
Sbjct: 401 FLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTL 460
Query: 477 VCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 536
VCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP+TV + K G +DLI
Sbjct: 461 VCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDLI 520
Query: 537 LALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG--KI 594
AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHIVAYR ++ G K
Sbjct: 521 TALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKA 580
Query: 595 KLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSS 654
KLEI++ QE++ D ++GS+ KLFG P VTY+ E LSG DID +S LSPL + ++
Sbjct: 581 KLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPLHKVHAP 640
Query: 655 AKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714
+K H G +NG L + + ++ S +T E+++ RELSF++ LTDER + KP+Q +
Sbjct: 641 SKIHNGSDNGHLADATVDQASGILSSPDT-EIDNASDRELSFRIFLTDERGLNIKPLQSE 699
Query: 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLT 774
S + PG +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL+AFL
Sbjct: 700 SSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLA 759
Query: 775 EEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL 834
EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFVNFP+
Sbjct: 760 EEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVH 819
Query: 835 NLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSE 894
+LDLSKY+K+K+G+SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N+WYHFDDSHVS V+E
Sbjct: 820 DLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNE 879
Query: 895 GDIKTSAAYVLFYRRVKSKTKAEMAETS 922
+I+ SAAYVLFYRRV+S+T+ + AE S
Sbjct: 880 SEIRNSAAYVLFYRRVRSETETQTAEMS 907
>sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana
GN=UBP9 PE=2 SV=1
Length = 910
Score = 1140 bits (2949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/928 (62%), Positives = 715/928 (77%), Gaps = 28/928 (3%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG P TP+EE++IV +L +S+ +LKEGNLYF+IS RWY SWE+Y
Sbjct: 1 MTIPNSD-FMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S +++G SS+ A RPGPIDN DII++ S+ +D ++RR L E
Sbjct: 60 V---EQSTKE------YISGESSE-ASRPGPIDNHDIIES---ESDVNDPQLRRLLMERV 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVPQ+VW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239
L K+AS R+LYEKVC L G+ QEKA IWDYF+K+++ +S ++L+++ L MDQDILL
Sbjct: 167 LGKQASIRELYEKVCALTGVPQEKAHIWDYFDKRKNGLLDSLSYKSLEESSLHMDQDILL 226
Query: 240 EVQ--VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGST 297
EV + +M STGN+LALVP+EPSRSS+TIAGGP LSNGH+T F+ +P
Sbjct: 227 EVDGSSSSQSAMSSTGNELALVPLEPSRSSVTIAGGPTLSNGHSTTSNFSLFP------R 280
Query: 298 FMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEIN 357
DDG +S + KGEKGGLAGL NLGNTCFMNSALQCL HTP + +YFL DYSD+IN
Sbjct: 281 ITSEDDGSNSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDIN 340
Query: 358 TENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAF 417
+NPLGM GELA+AFGDLL+KLWSSGR +VAPRAFK KLARFAPQFSGYNQHDSQELLAF
Sbjct: 341 RDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAF 400
Query: 418 LLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477
LLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKSTLV
Sbjct: 401 LLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLV 460
Query: 478 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL 537
CP C K+SITFDPFMYL++PLPST+TR+MTVTVFY +GS LPMP+TV + K+G +DLI
Sbjct: 461 CPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSIRDLIT 520
Query: 538 ALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQGGKIK 595
AL TAC L DE LLLAEVY+H+IF++FENP + +SSIKDDEHIVAYR ++ K GK K
Sbjct: 521 ALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKGSGKAK 580
Query: 596 LEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSA 655
LEI++ Q++ + ++G + KLFG P VTY+ E LSGADID +S+ LSPL + ++ +
Sbjct: 581 LEILHGGQKRPILESVRGRDVKLFGTPFVTYVNTEPLSGADIDAVLSRFLSPLHKVHAPS 640
Query: 656 KAHGGKENGFLPE-VIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714
K H G ENG LP+ +DE S S E++D RELSF++ LTDER + KP+Q +
Sbjct: 641 KIHNGSENGHLPDATVDEASEIL--SSPDTEIDDASDRELSFRIFLTDERGLNFKPLQSE 698
Query: 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLT 774
S + G +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL+AFL
Sbjct: 699 SSISLGIATRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLA 758
Query: 775 EEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL 834
EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFVNFP+
Sbjct: 759 EEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVH 818
Query: 835 NLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSE 894
+LDLSKY+K+K+ +SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N WYHFDDSHVS V+E
Sbjct: 819 DLDLSKYVKNKNDQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNEWYHFDDSHVSSVNE 878
Query: 895 GDIKTSAAYVLFYRRVKSKTKAEMAETS 922
+IK SAAYVLFYRRV+S+T+ + E S
Sbjct: 879 SEIKNSAAYVLFYRRVRSETETQTVEMS 906
>sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis
thaliana GN=UBP11 PE=3 SV=2
Length = 892
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/903 (60%), Positives = 668/903 (73%), Gaps = 41/903 (4%)
Query: 21 TPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNG 80
TP+EER+IV +L N+++ DLKEGNLYF+IS RWY W+R+V + F S +
Sbjct: 18 TPEEERRIVTELNNEAEADLKEGNLYFVISNRWYTRWQRFV-----GLLTEEFRSGEPSE 72
Query: 81 VSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYKGG 140
V+ RPGPIDN DII + S+ D ++R LEEG DY LV Q+VW KL WYKGG
Sbjct: 73 VT-----RPGPIDNHDII---DSESDASDPQLRMMLEEGVDYTLVQQEVWRKLVKWYKGG 124
Query: 141 PALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGI 199
P +PRK+IS+G + VEV+ LCL L DSRD S T+IRLSK+AS QLYE VC +G+
Sbjct: 125 PPVPRKLISQGFYTKSFSVEVYLLCLTLTDSRDESTTIIRLSKQASIGQLYEMVCAGKGV 184
Query: 200 EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV--QVDNGISMDSTGNDLA 257
+EKARIWDYF K++S S+Q++++A LQ +QDILLEV + M N+LA
Sbjct: 185 AKEKARIWDYFEKKKSVLLDPSSEQSVEEAGLQFNQDILLEVDGSASSQFVMSLAENELA 244
Query: 258 LVPIEPSRSSL--TIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGE 315
+VP+EP RS + GG LSNGH+ G++F+ + ++F DD S T KGE
Sbjct: 245 MVPLEPMRSDAMDIVRGGGTLSNGHSNGFKFSFFGRNTF------KDDV--SSRTFGKGE 296
Query: 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDL 375
K GL GLQNLGNTCFMNS LQCL HTP + +YFL DY +IN +NPLGM GELA+AFG+L
Sbjct: 297 KRGLGGLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGEL 356
Query: 376 LRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 435
LRKLWSSG+ VAPRAFK KLARFAPQFSGYNQHDSQE+LAFLLDGLHEDLN+VK+KPYI
Sbjct: 357 LRKLWSSGQNTVAPRAFKTKLARFAPQFSGYNQHDSQEMLAFLLDGLHEDLNKVKRKPYI 416
Query: 436 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 495
E KDS GRPD+EVA E WK HKARNDS+IVDVFQGQYKSTLVCP C K+SITFDPFMYL+
Sbjct: 417 EAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVCPDCGKISITFDPFMYLS 476
Query: 496 LPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 555
LPLPS+ TR+MTVTVFY +GS LPMP+TVT+ K G C+DL AL TACCL DE LLLAE
Sbjct: 477 LPLPSSRTRSMTVTVFYGDGSHLPMPYTVTVPKDGSCRDLSNALGTACCLDNDESLLLAE 536
Query: 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQGGKIKLEIVNRWQEKSASDYLKG 613
VY+H++F+++ENP EL++ IKD+EHIVAYRF + K GK+KLEI++ QEKS+ +G
Sbjct: 537 VYDHKVFKYYENPRELLNGIKDNEHIVAYRFKQMHKGPGKVKLEILHGEQEKSSD---RG 593
Query: 614 SERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDEL 673
K FG PLVTY+ +E LSG DI ++S LLSPLRR + S + G ENG +P DE
Sbjct: 594 P--KCFGTPLVTYINKEPLSGTDIATSISGLLSPLRRVHMSCVVNSGNENGHVP---DES 648
Query: 674 SNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDV 733
S S E D RELS L L D + +P++ DS++ PG KVL+ W +
Sbjct: 649 SRSILSRDTETEDND---RELSLSL-LRDYYSFNLQPLESDSVVNPGSVTKVLVKWNEKE 704
Query: 734 HELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793
HE YD SY+ DLP VHK KKT QE ISLFSCL+AFL EEPLGPDDMWYCP CKEHR
Sbjct: 705 HEKYDSSYLNDLPKVHKN-VLAKKTMQEGISLFSCLEAFLAEEPLGPDDMWYCPGCKEHR 763
Query: 794 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYD 853
QA KKLDLW LPD+LVFHLKRF+YSRY KNK+DT VNF I +LDLSKY+K++DG+SY+Y+
Sbjct: 764 QANKKLDLWKLPDILVFHLKRFTYSRYFKNKIDTLVNFHIHDLDLSKYVKNEDGQSYLYE 823
Query: 854 LFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913
L+AISNHYGGLGGGHYTAYAKL+DE +WY+FDDS VS V+E +IKTSAAYVLFY+RVKS
Sbjct: 824 LYAISNHYGGLGGGHYTAYAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQRVKSD 883
Query: 914 TKA 916
++
Sbjct: 884 SET 886
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana
GN=UBP5 PE=1 SV=2
Length = 924
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/923 (48%), Positives = 604/923 (65%), Gaps = 38/923 (4%)
Query: 21 TPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEP-SIDNISFDSPHMN 79
+P+EER ++D+ ++ + KEG+ ++LI+ RW++ W YV D+P + ++ S S H +
Sbjct: 16 SPEEERVFIRDIAIAAEANSKEGDTFYLITQRWWQEWIEYVNQDQPCNTNDGSSLSEHCD 75
Query: 80 GVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYKG 139
S ++P IDNSD+I + + + E+ L+EG+DYVL+PQ+VW +L WY G
Sbjct: 76 SPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSEIIETLQEGRDYVLLPQEVWNQLRSWYGG 135
Query: 140 GPALPRKMISEGIV-NEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRG 198
GP L R++IS G+ E VEV+ L L+L+ + + IR+SKK + R+L+ + C++
Sbjct: 136 GPTLARRVISSGLSQTELAVEVYPLRLQLLLMPKSDHSAIRISKKETIRELHRRACEIFD 195
Query: 199 IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI-------SMDS 251
++ E RIWDY+ Q+ + D+ D+TLDDA LQMDQDIL+EV NG S
Sbjct: 196 LDSEHVRIWDYYGHQKYSLMNDL-DKTLDDANLQMDQDILVEVLDINGTLSSAHIQSAQE 254
Query: 252 TG---NDLALVPIEPSRSSLTIAGGPALS-NGHTTGYRFNQYPGSSFGSTFMDMDDGYDS 307
G D + IEPS+SSL AGG + S N TG +F D+ Y S
Sbjct: 255 NGLVDGDSTSILIEPSKSSLAAAGGFSSSRNAFRTG-------SVEVSQSF---DNTYSS 304
Query: 308 YNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGE 367
+G GL GL NLGNTCFMNSA+QCLVHTP+ A YF DY EIN +NPLGM GE
Sbjct: 305 TGVTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGE 364
Query: 368 LALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 427
LALAFGDLLRKLW+ GR +APR FK KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLN
Sbjct: 365 LALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 424
Query: 428 RVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSIT 487
RVK KPYI +D+ GRPDEEVA+E WKNH ARNDS+IVDV QGQYKSTLVCP+C+KVS+T
Sbjct: 425 RVKHKPYINSRDADGRPDEEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPICNKVSVT 484
Query: 488 FDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 547
FDPFMYL+LPL TR +TVTVF + + LP TV + K G C+DLI AL+ AC LK
Sbjct: 485 FDPFMYLSLPLQFNTTRAITVTVFSCDKTALPSTITVNVSKQGRCRDLIQALTNACSLKQ 544
Query: 548 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSA 607
E L LAE+ N+ I R FE+P +SSIKDD+H+ AY+ + L +V R +++ A
Sbjct: 545 SEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHLAAYKLSKSSENTTLLRLVLRRRDQKA 604
Query: 608 SDYLKGSERKLFGAPLVTYLE-EEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFL 666
+ + K G PL++ + L+ I V +LSP RR S K G + +
Sbjct: 605 GERESTVQLKPCGTPLLSSASCGDALTKGKIHCLVQNMLSPFRREESVGKK--GNSDSSI 662
Query: 667 PEVIDELSNSHNESVETAELE--------DLCSRELSFQLSLTDERISSCKPIQKDSILK 718
PE N+ E + L+ DL + +LS QL D + + + +++
Sbjct: 663 PERRSARFNNTEEEDKVGGLKKAKKSNSSDLGASKLSLQLIDEDNKTINLPDNEAEAMKL 722
Query: 719 PGKH-IKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEP 777
P + + LDWT ++ +YD + ++ LP V K G T KK R E +SL++CL+AFL EEP
Sbjct: 723 PSSATVTIYLDWTPELSGMYDITCLESLPEVLKYGPTTKKARSEPLSLYACLEAFLREEP 782
Query: 778 LGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLD 837
L PD+MW+CPQC E RQA+KKLDLW LP+VLV HLKRFSYSR +K+KL+TFVNFPI +LD
Sbjct: 783 LVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLD 842
Query: 838 LSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGD 896
L+KY+ +K+ + +Y+L+A++NHYGG+G GHYTA+ KL+D++RWY+FDDSH+S ++E D
Sbjct: 843 LTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDD 902
Query: 897 IKTSAAYVLFYRRVKSKTKAEMA 919
+K+ AAYVLFYRR KS +M
Sbjct: 903 VKSGAAYVLFYRR-KSDAGGKMT 924
>sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana
GN=UBP8 PE=1 SV=2
Length = 871
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/836 (46%), Positives = 512/836 (61%), Gaps = 54/836 (6%)
Query: 92 IDNSDIIQNGNGSSEGDDLEVRRNLE---EGQDYVLVPQQVWEKLFCWYKGGPALPRKMI 148
I NSDI+ + EGD L+ E G+D+ LV +W + WY + +
Sbjct: 71 IFNSDILFDLR--REGDALQNGETGEASVSGRDFALVSSDMWLQALKWYHDDKNTEKGVK 128
Query: 149 SEGIVNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208
S R +V+ + L+L ++ + +++ KK ++ + + + CK+ ++ E+ RIWD
Sbjct: 129 SFSAGGVDRGDVYPVQLRLSVLQETNSLAVKICKKDNSVECFRRACKIFSLDSEQLRIWD 188
Query: 209 YFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSL 268
+ DVS+ D Q DQ+ILLE+Q+ G+S + + L + S
Sbjct: 189 ISGQTTLFFESDVSNSK--DCQQQADQEILLELQI-YGLS-----DSIKLKESKKEDGST 240
Query: 269 TIAGGPALSNGHTTG--YRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKG--GLAGLQN 324
G ++NG G +RF + SF K GE G GL GLQN
Sbjct: 241 QQTNG--ITNGMNGGTVFRFGRSNSLSF---------------LGKAGEAGTLGLTGLQN 283
Query: 325 LGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGR 384
LGNTCFMNS+LQCL HTP L +FLG+YS EIN +NPLGM GE+ALAFGDLLR LW+ G
Sbjct: 284 LGNTCFMNSSLQCLAHTPKLVDFFLGEYSKEINLDNPLGMKGEIALAFGDLLRSLWAPGA 343
Query: 385 AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRP 444
+ VAPR FK KLARFAPQFSG+NQHDSQELLAFLLDGLHEDLNRVK KPY+E KD GRP
Sbjct: 344 STVAPRTFKAKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRP 403
Query: 445 DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
D EVA+E W+NH ARNDS+IVDV QGQYKSTLVCP+C KVS+ FDPFMYL+LPLP T R
Sbjct: 404 DAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPICKKVSVMFDPFMYLSLPLPCTSMR 463
Query: 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRF 564
TM +TV A+GS LP+P TV + K G +DL AL TAC L +E LL+ EVYN++I RF
Sbjct: 464 TMDLTVMSADGSSLPIPLTVNVPKFGKFEDLHKALVTACSLPEEETLLVTEVYNNRIIRF 523
Query: 565 FENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSER---KLFGA 621
E P + ++ I+D + +V YR + ++ +K ++ G K FG
Sbjct: 524 LEEPTDSLTLIRDGDKLVVYRLKKDANNS---PLIVYMHQKLEEQFISGKSSPTWKAFGI 580
Query: 622 PLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESV 681
PLV+ L + +G+D++ KLLS + + EN E D+ SV
Sbjct: 581 PLVSRLCDVE-NGSDVENLYLKLLSSFKMPTEFFTEN--LENPTEEEATDKTDTDGTTSV 637
Query: 682 ETAELEDLCSRELS-----FQLSLTDERISSCKP-IQKDSILKPGKHIKVLLDWTDDVHE 735
E D+ S +L LTD+R +S + + K+ + K + VL W +
Sbjct: 638 EDTNSTDVKETTESLPDPVLRLYLTDDRGNSIEAEMLKEKPVNKSKRLNVLARWPVKELD 697
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
+YD + LP V K+G K QE++SLF CL+AFLTEEPLGPDDMWYCP CKEHRQA
Sbjct: 698 VYDTCLLSSLPEVSKSG---TKRPQESVSLFKCLEAFLTEEPLGPDDMWYCPGCKEHRQA 754
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGE-SYVYDL 854
KKLDLW LP++LV HLKRFSYSR++KNKL+ +V+FP+ NLDLS Y+ K+G+ +Y Y L
Sbjct: 755 IKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYML 814
Query: 855 FAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 910
+AISNHYG +GGGHYTAY +RWY FDDSHV +S+ IKTSAAYVLFY+R+
Sbjct: 815 YAISNHYGSMGGGHYTAYVHH-GGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKRL 869
>sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus
GN=Usp4 PE=1 SV=1
Length = 961
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 361/939 (38%), Positives = 500/939 (53%), Gaps = 80/939 (8%)
Query: 22 PDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGV 81
PD E Q + L L+ G ++LI +RW++ W++YV FDS M V
Sbjct: 11 PDVETQKTE-LGALMGTTLQRGAQWYLIDSRWFKQWKKYV----------GFDSWDMYNV 59
Query: 82 SSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---K 138
PGPIDNS + S+ + ++ +L + DYVLVP + W KL WY +
Sbjct: 60 GEHNL-FPGPIDNSGLF------SDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVE 112
Query: 139 GGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKL 196
G + RK++ G+ V +VEV+ L LKL ++ D + + KA T EK + KL
Sbjct: 113 GQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKL 172
Query: 197 RGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI-------S 248
I E+ R+W+ + + L D T+ DA L Q +++E Q ++G S
Sbjct: 173 FNIPAERETRLWNKY-MSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPRQTLQS 231
Query: 249 MDSTGNDLALV-PIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDS 307
ST +PS S + ++NG +T G S G Y+
Sbjct: 232 KSSTAPSRNFTTSSKPSASPYSSMSASLIANGDSTNSSGMHNSGVSRGGA--GFSASYNC 289
Query: 308 YNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHG 366
+ GL GL NLGNTCFMNSALQCL +T L +YFL D Y EIN +NPLGM G
Sbjct: 290 QEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKG 349
Query: 367 ELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDL 426
E+A A+ +L++++WS VAPR FK ++ RFAPQFSGY Q DSQELLAF+LDGLHEDL
Sbjct: 350 EIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDL 409
Query: 427 NRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSI 486
NRVK+KPY+E KD+ GRPD VA E W+NH+ RNDS+IVD F G +KSTLVCP C+KVS+
Sbjct: 410 NRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSV 469
Query: 487 TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 546
TFDPF YLTLPLP R M V + A+ P+ + VT+ G DL ALS +
Sbjct: 470 TFDPFCYLTLPLPLKKDRIMEVFLVPADPHCRPIQYRVTVPLMGAISDLCEALSKLSGIA 529
Query: 547 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRF-DRKQGGKIKLEIVNRWQEK 605
E +++ +VYNH+ + F+ E +S I + I Y G + + ++EK
Sbjct: 530 A-ENMVVTDVYNHRFHKIFQM-DEGLSHITPRDDIFVYEICTTPMDGSEYITLPVYFREK 587
Query: 606 SASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS-----PLRRTYSSAKAHGG 660
+ S L+G PL+ + + L+ + AV + +S PL + S+ G
Sbjct: 588 KSRPSSTSSGAVLYGQPLLVSVPKHRLTLESLYQAVCERISRYIKQPLPEEFLSSPLEPG 647
Query: 661 KENGF--------------------LPEVIDELSNSH----NESVETAELEDLCSRELSF 696
NG L EV + +S E+ + A+ R +F
Sbjct: 648 ACNGSRGSYEGDEEEMDHQEEGKEQLSEVEESGEDSQGGDPTETTQKAKGPPRHKRLFTF 707
Query: 697 QLSLTDERISSCKPIQKDSILKPGKHIK------VLLDWTDDVHELYDPSYIKDLPVVHK 750
L ++SC +S+ GK +K + +DW + LY + H
Sbjct: 708 SL------VNSCGTADINSLATDGKLLKLNSRSTLAIDWDSETRSLYFDEQESEACEKHT 761
Query: 751 TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVF 810
+ +K ++ AI+L C++ F T E LG D WYCP CK+H+QATKK DLW LP +LV
Sbjct: 762 SMSQPQKKKKAAIALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVV 821
Query: 811 HLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYT 870
HLKRFSY+RY ++KLDT V FP+ L++S+++ + YVYDL A+SNHYG +G GHYT
Sbjct: 822 HLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRAARPYVYDLIAVSNHYGAMGVGHYT 881
Query: 871 AYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
AYAK +WY+FDDS VS SE I T AAYVLFY+R
Sbjct: 882 AYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 920
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4
PE=1 SV=3
Length = 962
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 361/943 (38%), Positives = 501/943 (53%), Gaps = 87/943 (9%)
Query: 22 PDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGV 81
PD E Q + L L+ G ++LI +RW++ W++YV FDS M V
Sbjct: 11 PDVETQKTE-LGALMGTTLQRGAQWYLIDSRWFKQWKKYV----------GFDSWDMYNV 59
Query: 82 SSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---K 138
PGPIDNS + S+ + ++ +L + DYVLVP + W KL WY +
Sbjct: 60 GEHNL-FPGPIDNSGLF------SDPESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVE 112
Query: 139 GGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKL 196
G + RK++ G+ V +VEV+ L LKL ++ D + + KA T EK + KL
Sbjct: 113 GQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKL 172
Query: 197 RGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGI-------S 248
I E+ R+W+ + + L D T+ DA L Q +++E Q ++G S
Sbjct: 173 FNIPAERETRLWNKY-MSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPRQSLQS 231
Query: 249 MDSTGNDLALV-PIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDS 307
ST +PS S ++NG +T G S
Sbjct: 232 KSSTAPSRNFTTSSKPSASPYCSVSASLIANGDSTNSS-----GMHSSGVSRGGSGFSAS 286
Query: 308 YNTAKKGE---KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLG 363
YN + + GL GL NLGNTCFMNSALQCL +T L +YFL D Y EIN +NPLG
Sbjct: 287 YNCQEPPSPHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTEYFLKDEYEAEINRDNPLG 346
Query: 364 MHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLH 423
M GE+A A+ +L++++WS VAPR FK ++ RFAPQFSGY Q DSQELLAF+LDGLH
Sbjct: 347 MKGEIAEAYAELIKQMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLH 406
Query: 424 EDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSK 483
EDLNRVK+KPY+E KD+ GRPD VA E W+NH+ RNDS+IVD F G +KSTLVCP C+K
Sbjct: 407 EDLNRVKKKPYLEPKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAK 466
Query: 484 VSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC 543
VS+TFDPF YLTLPLP R M V + A+ P+ + VT+ G DL ALS
Sbjct: 467 VSVTFDPFCYLTLPLPLKKDRIMEVFLVPADPQCRPIQYRVTVPLMGAISDLCEALSKLS 526
Query: 544 CLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRF-DRKQGGKIKLEIVNRW 602
+ E +++ +VYNH+ + F+ E +S I + I Y + G + + +
Sbjct: 527 GIAA-ENMVVTDVYNHRFHKIFQM-DEGLSHITPRDDIFVYEVCNTSMDGSECITLPVYF 584
Query: 603 QEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS-----PLRRTYSSAKA 657
+EK + S L+G PL+ + + L+ + AV +S PL + S+
Sbjct: 585 REKKSRPSSASSGAVLYGQPLLVSVPKHKLTLESLYQAVCDRISRYIKQPLPDEFLSSPL 644
Query: 658 HGGKENGF---------------------LPEV----IDELSNSHNESVETAELEDLCSR 692
G NG L EV D+ + H+ES + + + R
Sbjct: 645 EPGACNGSRSSYEGDEEEEMDHQEEGKEQLSEVEGSGEDDQGDDHSESAQKVKGQPRHKR 704
Query: 693 ELSFQLSLTDERISSCKPIQKDSILKPGKHIK------VLLDWTDDVHELYDPSYIKDLP 746
+F L ++SC +S+ GK +K + +DW + LY +
Sbjct: 705 LFTFSL------VNSCGTADINSLATDGKLLKLNSRSTLAIDWDSETRSLYFDEQESEAC 758
Query: 747 VVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPD 806
H + +K ++ A++L C++ F T E LG D WYCP CK+H+QATKK DLW LP
Sbjct: 759 EKHLSMSQPQKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPK 818
Query: 807 VLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGG 866
+LV HLKRFSY+RY ++KLDT V FP+ L++S+++ + YVYDL A+SNHYG +G
Sbjct: 819 ILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCDRSARPYVYDLIAVSNHYGAMGV 878
Query: 867 GHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
GHYTAYAK +WY+FDDS VS SE I T AAYVLFY+R
Sbjct: 879 GHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQR 921
>sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus
GN=Usp15 PE=1 SV=1
Length = 952
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 352/963 (36%), Positives = 523/963 (54%), Gaps = 123/963 (12%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 1 MAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD----- 48
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+P +
Sbjct: 49 --SWDKYQM----GDQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILLPTEG 96
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAS 185
W KL WY +G + RK++ +G+ V +VEV+ LKL ++ + + V R KA
Sbjct: 97 WNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKAD 156
Query: 186 TRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243
T EK + K+ I EK AR+W+ + + PL+ D T+ DA L Q +++E +
Sbjct: 157 TIDTIEKEIRKIFNIPDEKEARLWNKY-MSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 215
Query: 244 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDD 303
++G T GP+ N + Y Y
Sbjct: 216 EDG----------------------TWPRGPSAPNVKNSNYCLPSYTAYK---------- 243
Query: 304 GYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPL 362
YD + E+ GL GL NLGNTCFMNSA+QCL +TP L +YFL D Y +E+N +NPL
Sbjct: 244 NYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPL 303
Query: 363 GMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGL 422
GM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY Q D QELLAFLLDGL
Sbjct: 304 GMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGL 363
Query: 423 HEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCS 482
HEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+F G +KSTLVCP C+
Sbjct: 364 HEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECA 423
Query: 483 KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTA 542
K+S+TFDPF YLTLPLP R++ V + + PM + V + K G DL ALS
Sbjct: 424 KISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTALSAL 483
Query: 543 CCLKIDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRFDRKQGGKIKLEIVNR 601
+ D+ +++ ++YNH+ R F L S + +DD ++ +R + + + V
Sbjct: 484 SGVPADK-MIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVVIPVCL 542
Query: 602 WQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGK 661
++ S Y + LFG P + + + ++ + ++ ++ + + + G
Sbjct: 543 REKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKMSTETEETDGPL 602
Query: 662 E-------NGFLPEVID--------ELSNSHNESVETAEL---------ED--------- 688
NG P I E +ES + EL ED
Sbjct: 603 RCCEDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSE 662
Query: 689 --LCSRE-------------LSFQL-SLTDERISSCKPIQK-----DSILKPGKHIKVLL 727
LC+ E +FQ +L + I+ K + D L+ + + L
Sbjct: 663 NGLCTEETCKGRLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERSFLAL 722
Query: 728 DWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786
DW D+ + Y D + +D + K ++ + L C++ F T+E LG +D WYC
Sbjct: 723 DWDPDLKKRYFDENAAEDFEKHESVEY--KPPKRPFVKLKDCIELFTTKEKLGAEDPWYC 780
Query: 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD 846
P CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+FPI +LD+S+++ + +
Sbjct: 781 PNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLINPN 840
Query: 847 GESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLF 906
Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS SE I + AAYVLF
Sbjct: 841 AGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSSASEDQIVSKAAYVLF 900
Query: 907 YRR 909
Y+R
Sbjct: 901 YQR 903
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4
PE=1 SV=3
Length = 963
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 364/955 (38%), Positives = 500/955 (52%), Gaps = 89/955 (9%)
Query: 11 MENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDN 70
M GG C PD E Q +L L+ G ++LI +RW++ W++YV
Sbjct: 1 MAEGGGCRE-RPDAETQ-KSELGPLMRTTLQRGAQWYLIDSRWFKQWKKYV--------- 49
Query: 71 ISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVW 130
FDS M V PGPIDNS + S+ + ++ +L + DYVLVP + W
Sbjct: 50 -GFDSWDMYNVGEHNL-FPGPIDNSGLF------SDPESQTLKEHLIDELDYVLVPTEAW 101
Query: 131 EKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAST 186
KL WY +G + RK++ G+ V +VEV+ L LKL ++ D + + KA T
Sbjct: 102 NKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADT 161
Query: 187 RQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244
EK + KL I E+ R+W+ + + L D T+ DA L Q +++E Q +
Sbjct: 162 IATIEKEMRKLFNIPAERETRLWNKY-MSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQNE 220
Query: 245 NGISMDSTGNDLALVPIEPSRSSLT----------IAGGPALSNGHTTGYRFNQYPGSSF 294
+G T + PSR+ T ++NG +T G
Sbjct: 221 DGTWPRQTLQSKS--STAPSRNFTTSPKSSASPYSSVSASLIANGDSTST-----CGMHS 273
Query: 295 GSTFMDMDDGYDSYNTAKKGE---KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD 351
SYN + + GL GL NLGNTCFMNSALQCL +T L YFL D
Sbjct: 274 SGVSRGGSGFSASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKD 333
Query: 352 -YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHD 410
Y EIN +NPLGM GE+A A+ +L++++WS A VAPR FK ++ RFAPQFSGY Q D
Sbjct: 334 EYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQD 393
Query: 411 SQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 470
SQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD VA E W+NH+ RNDS+IVD F G
Sbjct: 394 SQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHG 453
Query: 471 QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHG 530
+KSTLVCP C+KVS+TFDPF YLTLPLP R M V + A+ P + VT+ G
Sbjct: 454 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMG 513
Query: 531 CCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQ 590
DL ALS + E +++A+VYNH+ + F+ L + D+ V
Sbjct: 514 AVSDLCEALSRLSGIAA-ENMVVADVYNHRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSV 572
Query: 591 GGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS---- 646
G + + ++E+ + S L+G PL+ + + L+ + AV +S
Sbjct: 573 DGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVK 632
Query: 647 -PLRRTYSSAKAHGGKENGF---------------------LPEV----IDELSNSHNES 680
PL + S+ G NG L E DE N +E+
Sbjct: 633 QPLPDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGSGEDEPGNDPSET 692
Query: 681 VETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK------VLLDWTDDVH 734
+ C + L F SL ++S +S+ GK +K + +DW +
Sbjct: 693 TQKKIKGQPCPKRL-FTFSL----VNSYGTADINSLAADGKLLKLNSRSTLAMDWDSETR 747
Query: 735 ELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794
LY + H + +K ++ ++L C++ F T E LG D WYCP CK+H+Q
Sbjct: 748 RLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 807
Query: 795 ATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDL 854
ATKK DLW LP +LV HLKRFSY+RY ++KLDT V FPI L++S+++ + YVYDL
Sbjct: 808 ATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDL 867
Query: 855 FAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
A+SNHYG +G GHYTAYAK +WY+FDDS+VS SE I T AAYVLFY+R
Sbjct: 868 IAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922
>sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15
PE=2 SV=1
Length = 952
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 344/933 (36%), Positives = 509/933 (54%), Gaps = 116/933 (12%)
Query: 40 LKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99
L++G+ ++L+ +RW++ W++YV D S+D M + PGPIDNS +++
Sbjct: 24 LRKGDTWYLVDSRWFKQWKKYVGFD-------SWDKYQM----GDQNVYPGPIDNSGLLR 72
Query: 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---KGGPALPRKMISEGI-VNE 155
+G+ S ++ +L + DY+L+P + W KL WY +G + RK++ +G+ V
Sbjct: 73 DGDAQS------LKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKH 126
Query: 156 KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEK-VCKLRGIEQEK-ARIWDYFNKQ 213
+VEV+ LKL ++ + + V R KA T EK + K+ I EK R+W+ +
Sbjct: 127 CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDEKETRLWNKY-MS 185
Query: 214 RSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGG 273
+ PL+ D T+ DA L Q +++E + ++G T G
Sbjct: 186 NTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG----------------------TWPRG 223
Query: 274 PALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNS 333
P+ N + Y Y YD + E+ GL GL NLGNTCFMNS
Sbjct: 224 PSTPNVKNSNYCLPSYTAYK----------NYDYSEPGRNNEQPGLCGLSNLGNTCFMNS 273
Query: 334 ALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392
A QCL +TP L +YFL D Y +E+N +NPLGM GE+A ++ +L++++WS + V PRAF
Sbjct: 274 AFQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKYSYVTPRAF 333
Query: 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANEC 452
K ++ RFAPQFSGY Q D QELLAFLLDGLHEDLNR+++KPYI++KD+ GRPD+ VA E
Sbjct: 334 KTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEA 393
Query: 453 WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFY 512
W+NH RNDS+IVD+F G +KSTLVCP C+K+S+TFDPF YLTLPLP RT+ V +
Sbjct: 394 WENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVR 453
Query: 513 ANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI 572
+ PM + V + K G DL ALS + D+ +++ ++YNH+ R F L
Sbjct: 454 MDPLTKPMQYKVVVPKIGNILDLCTALSLLSGVPADK-MIVTDIYNHRFHRIFAMDENLS 512
Query: 573 SSI-KDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631
S + +DD ++ +R + + + V ++ S Y + LFG P + + +
Sbjct: 513 SIMERDDIYVFEININRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNN 572
Query: 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKE-------NGFLPEVID--------ELSNS 676
++ + ++ ++ + + G NG P I E
Sbjct: 573 TEDKLYNLLLVRMCRYVKISTDTEDTEGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEP 632
Query: 677 HNESVETAEL---------ED-----------LCSRE-------------LSFQL-SLTD 702
+ES + EL ED LC+ E +FQ +L +
Sbjct: 633 DDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEETCRGQLTGHKKRLFTFQFNNLGN 692
Query: 703 ERISSCKPIQK-----DSILKPGKHIKVLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVK 756
I+ K + D L+ + + LDW D+ + Y D + +D + K
Sbjct: 693 TDINYIKDDTRHIRFDDRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEY--K 750
Query: 757 KTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFS 816
++ + L C++ F T+E LG +D WYCP CKEH+QATKKLDLW LP VLV HLKRFS
Sbjct: 751 PPKKPFVKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFS 810
Query: 817 YSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLI 876
YSRY+++KLDT V+FPI +LD+S+++ + + Y+L A+SNHYGG+GGGHYTA+AK
Sbjct: 811 YSRYMRDKLDTLVDFPINDLDMSEFLINPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNK 870
Query: 877 DENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
D+ +WY+FDDS VS SE I + AAYVLFY+R
Sbjct: 871 DDGKWYYFDDSSVSTASEDQIVSKAAYVLFYQR 903
>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4
PE=2 SV=1
Length = 963
Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust.
Identities = 363/955 (38%), Positives = 501/955 (52%), Gaps = 89/955 (9%)
Query: 11 MENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDN 70
M GG C PD E Q +L L+ G ++LI +RW++ W++YV
Sbjct: 1 MAEGGGCRE-RPDAETQ-KSELGALMRTTLQRGAQWYLIDSRWFKQWKKYV--------- 49
Query: 71 ISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVW 130
F S M V PGPIDNS + S+ + ++ +L + DYVLVP + W
Sbjct: 50 -GFGSWDMYNVGEHNL-FPGPIDNSGLF------SDPESQTLKEHLIDELDYVLVPTEAW 101
Query: 131 EKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAST 186
KL WY +G + RK++ G+ V +VEV+ L LKL ++ D + + KA T
Sbjct: 102 NKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADT 161
Query: 187 RQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244
EK + KL I E+ AR+W+ + + L D T+ DA L + Q +++E Q +
Sbjct: 162 IATIEKEMRKLFNIPAEREARLWNKY-MSNTYEQLSKLDNTVQDAGLYLGQVLVIEPQNE 220
Query: 245 NGISMDSTGNDLALVPIEPSRSSLT----------IAGGPALSNGHTTGYRFNQYPGSSF 294
+G T + PSR+ T ++NG +T G
Sbjct: 221 DGTWPRQTLQSKS--STAPSRNFTTSPKSSASPYSSVSDSLIANGDSTST-----CGMHS 273
Query: 295 GSTFMDMDDGYDSYNTAKKGE---KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD 351
SYN + + GL GL NLGNTCFMNSALQCL +T L YFL D
Sbjct: 274 SGVSRGGSGFSASYNCQEPPSSHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKD 333
Query: 352 -YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHD 410
Y EIN +NPLGM GE+A A+ +L++++WS A VAPR FK ++ RFAPQFSGY Q D
Sbjct: 334 EYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQD 393
Query: 411 SQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 470
SQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD VA E W+NH+ RNDS+IVD F G
Sbjct: 394 SQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDVVVAKEAWENHRLRNDSVIVDTFHG 453
Query: 471 QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHG 530
+KSTLVCP C+KVS+TFDPF YLTLPLP R M V + A+ P + VT+ G
Sbjct: 454 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEVFLVPADPHCRPTQYRVTVPLMG 513
Query: 531 CCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQ 590
DL ALS + E +++A+VYNH+ + F+ L + D+ V
Sbjct: 514 AVSDLCEALSRLSGIAA-ENMVVADVYNHRFHKIFQMDEGLNHIMPRDDIFVYEVCSTSV 572
Query: 591 GGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS---- 646
G + + ++E+ + S L+G PL+ + + L+ + AV +S
Sbjct: 573 DGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVK 632
Query: 647 -PLRRTYSSAKAHGGKENGF---------------------LPEV----IDELSNSHNES 680
PL + S+ G NG L E DE + +E+
Sbjct: 633 QPLPDEFGSSPLEPGACNGSRNSCEGEDEEEMEHQEEGKEQLSETEGSGEDEPGSDPSET 692
Query: 681 VETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK------VLLDWTDDVH 734
+ C + L F SL ++S +S+ GK +K + +DW +
Sbjct: 693 TQKKIKGQPCPKRL-FTFSL----VNSYGTADINSLAADGKLLKLNSRSTLAMDWDSETR 747
Query: 735 ELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794
LY + H + +K ++ ++L C++ F T E LG D WYCP CK+H+Q
Sbjct: 748 SLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQ 807
Query: 795 ATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDL 854
ATKK DLW LP +LV HLKRFSY+RY ++KLDT V FPI L++S+++ + YVYDL
Sbjct: 808 ATKKSDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDL 867
Query: 855 FAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
A+SNHYG +G GHYTAYAK +WY+FDDS+VS SE I T AAYVLFY+R
Sbjct: 868 IAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 922
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15
PE=1 SV=3
Length = 981
Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust.
Identities = 353/967 (36%), Positives = 534/967 (55%), Gaps = 102/967 (10%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 1 MAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD----- 48
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+P +
Sbjct: 49 --SWDKYQM----GDQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILLPTEG 96
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAS 185
W KL WY +G + RK++ +G+ V +VEV+ LKL ++ + + V R KA
Sbjct: 97 WNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKAD 156
Query: 186 TRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243
T EK + K+ I EK R+W+ + + PL+ D T+ DA L Q +++E +
Sbjct: 157 TIDTIEKEIRKIFSIPDEKETRLWNKY-MSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 215
Query: 244 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTF-MDMD 302
++G T P P S+ + P +S + N + S + +
Sbjct: 216 EDG-----TWPRGPSTPKSPGASNFSTL--PKISPSSLSNNYNNMNNRNVKNSNYCLPSY 268
Query: 303 DGYDSYNTAKKG---EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINT 358
Y +Y+ ++ G E+ GL GL NLGNTCFMNSA+QCL +TP L +YFL D Y +E+N
Sbjct: 269 TAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNF 328
Query: 359 ENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFL 418
+NPLGM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY Q D QELLAFL
Sbjct: 329 DNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFL 388
Query: 419 LDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478
LDGLHEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+F G +KSTLVC
Sbjct: 389 LDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVC 448
Query: 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILA 538
P C+K+S+TFDPF YLTLPLP RT+ V + + PM + V + K G DL A
Sbjct: 449 PECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTA 508
Query: 539 LSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRFDRKQGGKIKLE 597
LS + D+ +++ ++YNH+ R F L S + +DD ++ +R + + +
Sbjct: 509 LSALSGIPADK-MIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEININRTEDTEHVII 567
Query: 598 IVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKA 657
V ++ S Y + LFG P + + + ++ + ++ ++ + + +
Sbjct: 568 PVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTEDKLYNLLLLRMCRYVKISTETEET 627
Query: 658 HGGKE-------NGFLPEVIDELSN--------------------SHNESVETAE----- 685
G NG P I E + S NE+ ++ +
Sbjct: 628 EGSLHCCKDQNINGNGPNGIHEEGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGD 687
Query: 686 --------LEDLCSREL--------SFQL-SLTDERISSCKPIQK-----DSILKPGKHI 723
ED C +L +FQ +L + I+ K + D L+ +
Sbjct: 688 NDSENGLCTEDTCKGQLTGHKKRLFTFQFNNLGNTDINYIKDDTRHIRFDDRQLRLDERS 747
Query: 724 KVLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDD 782
+ LDW D+ + Y D + +D + K ++ + L C++ F T+E LG +D
Sbjct: 748 FLALDWDPDLKKRYFDENAAEDFEKHESVEY--KPPKKPFVKLKDCIELFTTKEKLGAED 805
Query: 783 MWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 842
WYCP CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+FPI +LD+S+++
Sbjct: 806 PWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPINDLDMSEFL 865
Query: 843 KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAA 902
+ + Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS SE I + AA
Sbjct: 866 INPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAA 925
Query: 903 YVLFYRR 909
YVLFY+R
Sbjct: 926 YVLFYQR 932
>sp|A6QR55|UBP4_BOVIN Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2
SV=1
Length = 963
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 359/956 (37%), Positives = 496/956 (51%), Gaps = 90/956 (9%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E GG PD E Q +L L+ G ++LI +RW++ W++YV
Sbjct: 1 MAEGGG--YRERPDAETQ-KSELGALMRTTLQRGAQWYLIDSRWFKQWKKYV-------- 49
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
FDS M V PGPIDNS + S+ + ++ +L + DYVLVP +
Sbjct: 50 --GFDSWDMYNVGEHNL-YPGPIDNSGLF------SDPESQTLKEHLIDELDYVLVPAEA 100
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAS 185
W KL WY +G + RK++ G+ V +VEV+ L LKL ++ D + + KA
Sbjct: 101 WNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKAD 160
Query: 186 TRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243
T EK + KL I E+ R+W+ + + L D T+ DA L Q +++E Q
Sbjct: 161 TIATIEKEMRKLFNIPAERETRLWNKY-MSNTYEQLSKLDNTVQDAGLYQGQVLVIEPQN 219
Query: 244 DNGISMDSTGNDLALVPIEPSRSSLT----------IAGGPALSNGHTTGYRFNQYPGSS 293
++G T + PSR+ T ++NG +T G
Sbjct: 220 EDGTWPRQTQQSKS--STAPSRNFTTSPKSSASPYSSVSASPIANGDSTNTS-----GMH 272
Query: 294 FGSTFMDMDDGYDSYNTAKKG---EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG 350
SYN + + GL GL NLGNTCFMNSALQCL +T L YFL
Sbjct: 273 SSGVSRGGSGFSASYNCQESPLTHVQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLK 332
Query: 351 D-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQH 409
D Y EIN +NPLGM GE+A A+ +L++++WS A VAPR FK ++ RFAPQFSGY Q
Sbjct: 333 DEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAPQFSGYQQQ 392
Query: 410 DSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQ 469
DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD VA E W+NH+ RNDS+IVD F
Sbjct: 393 DSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFH 452
Query: 470 GQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKH 529
G +KSTLVCP C+KVS+TFDPF YLTLPLP R M + + A+ P + V +
Sbjct: 453 GLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEIFLVPADPRCRPTQYRVVVPLM 512
Query: 530 GCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRK 589
G DL ALS + E +++ +VYNH+ + F+ L + D+ V
Sbjct: 513 GAVSDLCEALSKLSGIAA-ENMVVTDVYNHRFHKIFQMDEGLNHIMPRDDIFVYEVCSTS 571
Query: 590 QGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS--- 646
G + + ++E+ + + L+G PL+ + + L+ + AV + +S
Sbjct: 572 PDGSECVTLPVYFRERKSRPSSTSTGAVLYGQPLLVSVPKHKLTLESLYQAVCERISRYI 631
Query: 647 --PLRRTYSSAKAHGGKENGF---------------------LPEVI----DELSNSHNE 679
PL S+ G NG L E DE + H E
Sbjct: 632 KQPLPDESGSSPLELGACNGSRSGCAGEDEEEMEHQEEGREQLSETEGSGDDEPGSDHGE 691
Query: 680 SVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIK------VLLDWTDDV 733
+ + C R L F SL ++S +S+ GK +K + +DW +
Sbjct: 692 ATQKKNKGRPCPRRL-FTFSL----VNSYGTADINSLATDGKLLKLNSRSTLAIDWDSET 746
Query: 734 HELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793
Y + H + +K ++ A++L C++ F T E LG D WYCP CK+H+
Sbjct: 747 RSCYYNEQESETYEKHVSMLQPQKKKKTAVALRDCIELFTTMETLGEHDPWYCPNCKKHQ 806
Query: 794 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYD 853
QATKK DLW LP +LV HLKRFSY+RY ++KLDT V FP+ L++S+++ YVYD
Sbjct: 807 QATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRGLNMSEFVCDPSARPYVYD 866
Query: 854 LFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
L A+SNHYG +G GHYTAYAK +WY+FDDS+VS E I T AAYVLFY+R
Sbjct: 867 LIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLACEDQIVTKAAYVLFYQR 922
>sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis
GN=usp15 PE=2 SV=2
Length = 982
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 347/951 (36%), Positives = 522/951 (54%), Gaps = 113/951 (11%)
Query: 40 LKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99
L+ G+ ++LI +RW++ W++YV D S+D M + PGPIDNS +++
Sbjct: 24 LRRGDTWYLIDSRWFKQWKKYVGFD-------SWDKYQM----GDQNVYPGPIDNSGLLK 72
Query: 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---KGGPALPRKMISEGI-VNE 155
+ + S ++ +L + DY+L+P + W KL WY + + RK++ +G+ V
Sbjct: 73 DTDTQS------LKEHLIDELDYILLPTEGWNKLVSWYSVVESQQPIARKVVEQGMFVKH 126
Query: 156 KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGI----EQEKARIWDYFN 211
+VEV+ LKL ++ + + V R KA T + EK ++R I ++++ R+W+ +
Sbjct: 127 CKVEVYLTELKLCENGNMNNVVTRRFSKADTIDMIEK--EMRTIFSIPDEKETRLWNKY- 183
Query: 212 KQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIA 271
+ PL+ + T+ DA L Q +++E + G + + +P + S+L
Sbjct: 184 MSNTFEPLNKPESTIQDAGLYQGQMLVIEQKNQEGQWPRGSMPKSSGIP---NFSTLPKI 240
Query: 272 GGPALSNGHTTGYRFNQYPGSSFGSTFMDMDD-------GYDSYNTAKKG---EKGGLAG 321
+LSN + ++F S M + Y +Y ++ G E+ GL G
Sbjct: 241 SPSSLSNNY-----------NNFNSRIMKNSNYCLPSYAAYKNYEYSEPGRHNEQPGLCG 289
Query: 322 LQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW 380
L NLGNTCFMNSA+QCL +TP L +YFL D Y DE+N +NPLGM GE+A ++ +L++++W
Sbjct: 290 LSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQDELNMDNPLGMRGEIAKSYAELIKQMW 349
Query: 381 SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDS 440
S + V PRAFK ++ RFAPQFSGY Q D QELLAFLLDGLHEDLNR+++KPYI++KD+
Sbjct: 350 SGKYSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDA 409
Query: 441 GGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPS 500
GRPD+ VA E W+NH RNDS+IVD+F G +KSTLVCP CSK+S+TFDPF YLTLPLP
Sbjct: 410 DGRPDKVVAEEAWENHIKRNDSIIVDIFHGLFKSTLVCPECSKISVTFDPFCYLTLPLPM 469
Query: 501 TVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 560
R + V + + PM + V + K G DL ALS+ + E +++ ++YNH+
Sbjct: 470 KKERALEVYLVRMDPLAKPMQYKVIVPKIGNIMDLCTALSSLSGIA-PEKMVVTDIYNHR 528
Query: 561 IFRFFENPAELISSI-KDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 619
R F L S + +DD ++ +R + + + V ++ + Y LF
Sbjct: 529 FHRIFAMDENLSSIMERDDIYVFETSINRTEDTEQVIIPVYLREKFRHTSYSHHHGSTLF 588
Query: 620 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKA----HGGKE---NGFLPEVIDE 672
G P + + ++ + ++ ++ T + + H KE NG P I E
Sbjct: 589 GQPFLITVPRNITEDKLYNLLLLRMCRYVKATNDTEENDGSLHCNKEHTVNGNGPNGIHE 648
Query: 673 LSN--------------------SHNESVETAE-------------LEDLC--------- 690
+ S NE+ ++ + ED C
Sbjct: 649 EGSPSEMETDEPDDESSQDQELPSENENSQSEDSVGGDNDSENGLCTEDTCKGQSVTGQK 708
Query: 691 SRELSFQLS-LTDERISSCKPIQK-----DSILKPGKHIKVLLDWTDDV-HELYDPSYIK 743
R +FQ S L I+ K K + L+ + + LDW + + +D + +
Sbjct: 709 KRLFTFQFSNLGSSDITYIKDDTKYIRFDERQLRLDERSYLALDWDPKLKKKFFDENAAE 768
Query: 744 DLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWM 803
D FT +K + + L C++ F T+E LG +D WYCP CKEH+QATKKLDLW
Sbjct: 769 DFEKHESVDFTPQK--KAFMKLKDCIELFTTKEKLGAEDPWYCPNCKEHQQATKKLDLWS 826
Query: 804 LPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 863
LP VLV HLKRFSYSRY+++KLDT V+FPI +LD+S ++ + + Y+L A+SNHYGG
Sbjct: 827 LPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSTFLINPNAGPCCYNLIAVSNHYGG 886
Query: 864 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 914
+GGGHYTA+AK D+ +WY+FDDS VS SE I + AAYVLFY+R + T
Sbjct: 887 MGGGHYTAFAKNKDDGKWYYFDDSSVSTASEEQIVSKAAYVLFYQRQDTIT 937
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 317/936 (33%), Positives = 481/936 (51%), Gaps = 125/936 (13%)
Query: 18 LPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPH 77
LP + RQI ++ ++ + L+ G +FL+ WY+ WE YV G + D+ +F
Sbjct: 75 LPGLDSQWRQI-ENGESGRERPLRAGESWFLVEKHWYKQWEAYVQGGDQ--DSSTF---- 127
Query: 78 MNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY 137
PG I+N+ + Q+ + ++ L EG+DYVL+P W L WY
Sbjct: 128 -----------PGCINNATLFQDE------INWRLKEGLVEGEDYVLLPAAAWHYLVSWY 170
Query: 138 ---KGGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVC 194
G P + RK+I + N ++VEV+ + L L+ D ++ + L +
Sbjct: 171 GLEHGQPPIERKVIE--LPNIQKVEVYPVELLLVRHNDLGKSHTVQFSHTDSIGLVLRTA 228
Query: 195 KLRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDST 252
+ R + QE R+W N + S L + T+ DA L+ Q I++E + +G
Sbjct: 229 RERFLVEPQEDTRLWAK-NSEGSLDRLYDTHITVLDAALETGQLIIMETRKKDGT----- 282
Query: 253 GNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAK 312
+P + +M + + +
Sbjct: 283 ------------------------------------WPSAQLHVMNNNMSEEDEDF---- 302
Query: 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALA 371
KG+ G + GL NLGNTCFMNSALQCL + P L +YFL + Y +E+N NPLGM GE+A A
Sbjct: 303 KGQPG-ICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNCYLEELNFRNPLGMKGEIAEA 361
Query: 372 FGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ 431
+ DL+++ WS ++ P FK K+ FA QF GY QHDSQELL+FLLDGLHEDLNRVK+
Sbjct: 362 YADLVKQAWSGHHRSIVPHVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKK 421
Query: 432 KPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPF 491
K Y+E+ D+ GRPD+EVA E W+NHK RNDS+IVD F G +KSTLVCP C VS+TFDPF
Sbjct: 422 KEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPF 481
Query: 492 MYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551
YL++PLP + R + V + P + + K G DL +ALS + E +
Sbjct: 482 CYLSVPLPISHKRVLEVFFIPMDPRRKPEQHRLVVPKKGKISDLCVALSKHTGIS-PERM 540
Query: 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAY----RFDRKQGGKIKLEIVNRWQEKS- 606
++A+V++H+ ++ ++ E +SSI D + I Y R + +G + + + +E++
Sbjct: 541 MVADVFSHRFYKLYQL-EEPLSSILDRDDIFVYEVSGRIEAIEGSREDIVVPVYLRERTP 599
Query: 607 ASDYLKGSE-RKLFGAPLVTYLEEEHLSGADI-DIAVSKLLSPLRRTYSS---------- 654
A DY LFG PL+ + + + + ++ + +L + + S
Sbjct: 600 ARDYNNSYYGLMLFGHPLLVSVPRDRFTWEGLYNVLMYRLSRYVTKPNSDDEDDGDEKED 659
Query: 655 ---------AKAHGGKENGFLPEVIDELSNSHNE-------SVETAELEDLCSRELSFQL 698
+ GG PE S N + T++ R+ F L
Sbjct: 660 DEEDKDDVPGPSTGGSLRDPEPEQAGPSSGVTNRCPFLLDNCLGTSQWPPRRRRKQLFTL 719
Query: 699 SLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHK-TGFTVKK 757
+ +S + + + + +DW ++ + Y + V H G+ +KK
Sbjct: 720 QTVNSNGTSDRTTSPEEV---HAQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVMKK 776
Query: 758 TRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSY 817
+ L C++ F T E L ++ WYCP CK+H+ ATKKLDLWMLP++L+ HLKRFSY
Sbjct: 777 A---PVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSY 833
Query: 818 SRYLKNKLDTFVNFPILNLDLSKYMKSKDGES----YVYDLFAISNHYGGLGGGHYTAYA 873
+++ + KLDT V FPI +LD S+++ ES Y YDL A+SNHYGG+ GHYT +A
Sbjct: 834 TKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMRDGHYTTFA 893
Query: 874 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
D +W++FDD+ VSPV+E I++ AAYVLFY+R
Sbjct: 894 CNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 929
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15
PE=2 SV=1
Length = 981
Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust.
Identities = 236/627 (37%), Positives = 359/627 (57%), Gaps = 45/627 (7%)
Query: 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSID 69
M E G + L D +R + L S L++G+ ++L+ +RW++ W++YV D
Sbjct: 1 MAEGGAADL----DTQRSDIATLLKTS---LRKGDTWYLVDSRWFKQWKKYVGFD----- 48
Query: 70 NISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQV 129
S+D M + PGPIDNS ++++G+ S ++ +L + DY+L+P +
Sbjct: 49 --SWDKYQM----GDQNVYPGPIDNSGLLKDGDAQS------LKEHLIDELDYILLPTEG 96
Query: 130 WEKLFCWY---KGGPALPRKMISEGI-VNEKRVEVFXLCLKLIDSRDNSQTVIRLSKKAS 185
W KL WY +G + RK++ +G+ V +VEV+ LKL ++ + + V R KA
Sbjct: 97 WNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKAD 156
Query: 186 TRQLYEK-VCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243
T EK + K+ I EK AR+W+ + + PL+ D T+ DA L Q +++E +
Sbjct: 157 TIDTIEKEIRKIFNIPDEKEARLWNKY-MSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 215
Query: 244 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTF-MDMD 302
++G T P P S+ + P +S + N + S + +
Sbjct: 216 EDG-----TWPRGPSTPKSPGASNFSTL--PKISPSSLSNNYNNINNRNVKNSNYCLPSY 268
Query: 303 DGYDSYNTAKKG---EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINT 358
Y +Y+ ++ G E+ GL GL NLGNTCFMNSA+QCL +TP L +YFL D Y +E+N
Sbjct: 269 TAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNF 328
Query: 359 ENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFL 418
+NPLGM GE+A ++ +L++++WS + V PRAFK ++ RFAPQFSGY Q D QELLAFL
Sbjct: 329 DNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFL 388
Query: 419 LDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478
LDGLHEDLNR+++KPYI++KD+ GRPD+ VA E W+NH RNDS+IVD+F G +KSTLVC
Sbjct: 389 LDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVC 448
Query: 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILA 538
P C+K+S+TFDPF YLTLPLP R++ V + + PM + V + K G DL A
Sbjct: 449 PECAKISVTFDPFCYLTLPLPMKKERSLEVYLVRMDPLAKPMQYKVIVPKIGNILDLCTA 508
Query: 539 LSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSI-KDDEHIVAYRFDRKQGGKIKLE 597
LS + D+ +++ ++YNH+ R F L S + +DD ++ +R + + +
Sbjct: 509 LSALSGVPADK-MIVTDIYNHRFHRIFAVDENLSSIMERDDIYVFEININRAEDTEHVVI 567
Query: 598 IVNRWQEKSASDYLKGSERKLFGAPLV 624
V ++ S Y + LFG P +
Sbjct: 568 PVCLREKFRHSSYTHHTGSSLFGQPFL 594
Score = 186 bits (473), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/186 (52%), Positives = 131/186 (70%), Gaps = 3/186 (1%)
Query: 725 VLLDWTDDVHELY-DPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 783
+ LDW D+ + Y D + +D + K ++ + L C++ F T+E LG +D
Sbjct: 749 LALDWDPDLKKRYFDENAAEDFEKHESVEY--KPPKRPFVKLKDCIELFTTKEKLGAEDP 806
Query: 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843
WYCP CKEH+QATKKLDLW LP VLV HLKRFSYSRY+++KLDT V+FPI +LD+S+++
Sbjct: 807 WYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPISDLDMSEFLI 866
Query: 844 SKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAY 903
+ + Y+L A+SNHYGG+GGGHYTA+AK D+ +WY+FDDS VS SE I + AAY
Sbjct: 867 NPNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTASEDQIVSKAAY 926
Query: 904 VLFYRR 909
VLFY+R
Sbjct: 927 VLFYQR 932
>sp|Q9USM5|UBP1_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp1 PE=3 SV=1
Length = 849
Score = 330 bits (846), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 272/925 (29%), Positives = 413/925 (44%), Gaps = 188/925 (20%)
Query: 47 FLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSE 106
FLI W+ + ++ G+ + PGPI ++ N
Sbjct: 47 FLIDYDWFEGYVDFIYGE---------------------GDNPGPITQWRLLDEKN---- 81
Query: 107 GDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKR--VEVFXL 163
E++ +LEE DY +V +W L W+ G A+ RK++ G+ E++ V+++ +
Sbjct: 82 ----ELKHSLEESIDYSIVSASLWHMLVEWFGLEGLAIERKVLLVGLAAEQKPFVDIYPI 137
Query: 164 CLKL------IDSRDNSQT---------------VIRLSKKASTRQLYEKVCKLRGIEQE 202
L I+ + S + S+ + R LY++V + I
Sbjct: 138 NFTLHVLFDPINGENTSYSPLYQIDEPYHSDEPYAFSFSRSDTLRSLYKQVMEAFQISDG 197
Query: 203 KA-RIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPI 261
+ R+W Y NK +S VS +D Q +L E V I
Sbjct: 198 TSFRLW-YLNKSNLSSRF-VSLSEFND---QPAIALLSEYAVCMTIF------------- 239
Query: 262 EPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAG 321
+ IA G L Q+P + + D ++ GL G
Sbjct: 240 -----EIDIADGSLLLEF--------QHPNGEW------LSDSITKEQNLTINKEIGLCG 280
Query: 322 LQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW 380
L NLGN+C+MNSALQC++HT +L +YFL D Y +IN NPLGM G++AL++ LL+ +
Sbjct: 281 LYNLGNSCYMNSALQCMIHTHELTKYFLSDSYEKDINYNNPLGMMGKVALSYASLLKMIH 340
Query: 381 SSG-RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKD 439
+ +V+P +FK + F FSGY Q DSQE +AF LDGLHEDLNR++ KPY E
Sbjct: 341 HTADMHSVSPSSFKFIIGEFNTYFSGYRQQDSQEFIAFFLDGLHEDLNRIQIKPYFE--- 397
Query: 440 SGGRPD---------EEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDP 490
RPD + VAN+CW H RNDS+IV +FQG YKSTL C +C + S FDP
Sbjct: 398 ---RPDLFDEHPLHVQRVANQCWDIHTKRNDSIIVQLFQGMYKSTLECSICYQKSTAFDP 454
Query: 491 FMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL-ILALSTACCLKIDE 549
FMYLTLPLP++ V G+ P+ + L+ + A + ++
Sbjct: 455 FMYLTLPLPTSAKWRHKVVYVPPFGTQSPVELYLELLMESTVIQMKFQATEKLQKMGLEC 514
Query: 550 GLLLA-EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVN-------- 600
G L A ++Y ++++ +N ++ I +H+V Y + + IV+
Sbjct: 515 GELTACDIYRGKVYKVLKNKDKISKKIHKWDHVVLY---GSTANGLTIPIVHGCKRPAMP 571
Query: 601 -RWQEKSASDY---LKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAK 656
+Q + L R + LV + E + A ID+A+ L L+R S A
Sbjct: 572 GSYQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVYAGIDVAIGTLQLGLKRMESKA- 630
Query: 657 AHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSI 716
GK E ++ E++ E ++ + D+ + C
Sbjct: 631 ---GKW----------------ECIKEIEVKRFEIVEEE-EIVIDDKTVIMCL------- 663
Query: 717 LKPGKHIKVLLDWTDDVHE--LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLT 774
W D +E Y+ +I F + E+I+L CL F
Sbjct: 664 ------------WNDQQYEKLFYNCEWI----------FEKIQFHMESITLEDCLLEFSK 701
Query: 775 EEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFS---YSRYLKNKLDTFVNF 831
E L D WYCP CK R ATK+L++W LP +LV HL RFS + K V +
Sbjct: 702 PEQLDLQDSWYCPGCKAFRPATKRLEIWRLPKILVIHLNRFSGHGGDLRRRRKRRDLVVY 761
Query: 832 PILNLDLSKYMKS--KDGE------SYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 883
P+ +L+L +++ KD E S +YDL+A+ NH+G + GHYTAYA+ ++
Sbjct: 762 PVFDLNLKQFLSPFIKDHEWLSSQKSMLYDLYAVDNHHGFMSNGHYTAYARDASSQTFFK 821
Query: 884 FDDSHVSPVSEGDIKTSAAYVLFYR 908
FDD+ + + DI TS+AYVLFYR
Sbjct: 822 FDDTAICEIDPEDIVTSSAYVLFYR 846
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 327 bits (838), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 223/627 (35%), Positives = 320/627 (51%), Gaps = 94/627 (14%)
Query: 22 PDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGV 81
PD + Q Q + N + L+ G +FL+ WY+ WE YV G + D +F
Sbjct: 28 PDLDEQWRQ-IGNGRERPLRAGESWFLVEKHWYKQWEVYVKGGDQ--DASTF-------- 76
Query: 82 SSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY---K 138
PG I+N+ + ++ +R L EG DYVL+P W + WY
Sbjct: 77 -------PGCINNAGLFEDQIS------WHLRERLLEGDDYVLLPAPAWNYMVSWYGLMD 123
Query: 139 GGPALPRKMIS-EGIVNEKRVEVFXLCLKLIDSRD-NSQTVIRLSKKASTRQLYEKVCKL 196
G P + RK+I GI ++VEV+ L L L+ D + I+ S S + + +
Sbjct: 124 GQPPIERKVIELPGI---RKVEVYPLELLLVQHSDMETALTIQFSYTDSVELVLQTAREQ 180
Query: 197 RGIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGND 255
+E QE R+W N + S L + TL DA L+ Q +++E + +G
Sbjct: 181 FLVEPQEDTRLWTK-NSEGSLDRLCNTQITLLDACLETGQLVIMETRNKDG--------- 230
Query: 256 LALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGE 315
+ S + G N P D D+ +
Sbjct: 231 --------TWPSAQLCG-------------MNNIP---------DEDEDFQG-------- 252
Query: 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGD 374
+ G+ GL NLGNTCFMNSALQCL + P L +YFL + Y +E+N NPLGM GELA A+ D
Sbjct: 253 QPGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGELAEAYAD 312
Query: 375 LLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPY 434
L+++ WS ++ P FK K+ FA QF GY QHDSQELL+FLLDGLHEDLNRVK+K Y
Sbjct: 313 LVKQTWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEY 372
Query: 435 IEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYL 494
+E+ + GRPD EVA E W+NHK RNDS+IVD F G +KSTLVCP C VS+TFDPF YL
Sbjct: 373 VELCNGAGRPDLEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDCGNVSVTFDPFCYL 432
Query: 495 TLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554
++PLP R + V + P V + K G DL +ALST + D+ +++A
Sbjct: 433 SVPLPVCSRRVLEVFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAPDK-MIVA 491
Query: 555 EVYNHQIFRFF--ENPAELISSIKDDEHIVAY----RFDRKQGGKIKLEIVNRWQEKSAS 608
+V++H+ ++ + E+P +S I D + I Y R + +G + + + +E++ S
Sbjct: 492 DVFSHRFYKLYQLEDP---LSGILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPS 548
Query: 609 DYLKGSERK--LFGAPLVTYLEEEHLS 633
S LFG PL+ + + S
Sbjct: 549 RDYNNSYYGLILFGHPLLVSVPRDRFS 575
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 8/190 (4%)
Query: 725 VLLDWTDDVHELYDPSYIKDLPVVHK-TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 783
+ +DW D+ Y + V H G+ +KK+ + L C+ F T E L ++
Sbjct: 702 IAMDWEPDMKRRYYDEVEAEGYVKHDCVGYMLKKS---PVQLKECIKLFTTVETLEKENP 758
Query: 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843
WYC CK+H+ ATKKLDLWMLP+VL+ HLKRFS+S+ + KLDT V FPI +LD S+++
Sbjct: 759 WYCSSCKQHQLATKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVI 818
Query: 844 SKDGES----YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT 899
ES Y YDL A+SNHYGG+ GHYT +A D +W++FDD+ VSPV+E I++
Sbjct: 819 KPKNESSPDLYKYDLIAVSNHYGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIES 878
Query: 900 SAAYVLFYRR 909
AAYVLFY+R
Sbjct: 879 KAAYVLFYQR 888
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp12 PE=1 SV=1
Length = 979
Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 210/643 (32%), Positives = 311/643 (48%), Gaps = 83/643 (12%)
Query: 18 LPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPH 77
LP ++++ I + + NQ +L+L + + Y L S WY Y+ D P
Sbjct: 50 LPSIAEQKQLIGELVNNQPELELGQVDNYIL-SYSWYERLCSYLAEDGPF---------- 98
Query: 78 MNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY 137
PGP+D DI G+ ++ +L+E D+ ++ + VW+ L WY
Sbjct: 99 -----------PGPVDQEDIADLETGT-------LKPDLQEEIDFTIISRDVWDLLVRWY 140
Query: 138 K-GGPALPRKMISEG------IVNEKRVEVFXLCLKLIDSRDNSQT----VIRLSKKAST 186
GP PR+ ++ G +V E +F L L ++ D +++ I LS K++
Sbjct: 141 GLKGPEFPRETVNLGSESHPHLVVEVYPPIFSLTLLSTNAVDANESHKPKKISLSSKSTL 200
Query: 187 RQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQ----DILLEVQ 242
L E V + ++ R+W Q +D S + ++++ D L + +
Sbjct: 201 EDLLEGVKYTLSLPSDQFRLWRVDTDQPLHRTIDPS------SFIKINSKEIIDFLEKSK 254
Query: 243 VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMD 302
+ MDS+ + +A I T AL R NQ
Sbjct: 255 TLVELGMDSSCSLVAECMINE-----TWPVDRALRLQFLIQQRNNQ-------------- 295
Query: 303 DGYDSYNTAKKGEK--GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTE 359
S N +K EK G GL NLGNTC+MNSALQCL HT +L +F D + +++N
Sbjct: 296 ----SSNEEQKQEKRVPGTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNES 351
Query: 360 NPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLL 419
NPLGM G++A F L++ L+S ++ APR FK + +F F GY Q DSQE LAFLL
Sbjct: 352 NPLGMGGQVASIFASLIKSLYSPEHSSFAPRQFKATIGKFNHSFLGYGQQDSQEFLAFLL 411
Query: 420 DGLHEDLNRVKQKPYIEMKDSGGRPDEEVAN---ECWKNHKARNDSLIVDVFQGQYKSTL 476
DGLHEDLNR+ QKPY D +E++ N ECW+ HK RNDSLIVD+FQG Y+STL
Sbjct: 412 DGLHEDLNRIYQKPYTSKPDLYEVDEEKIKNTAEECWRLHKLRNDSLIVDLFQGMYRSTL 471
Query: 477 VCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTL-MKHGCCKDL 535
VCPVC+ VSITFDPFM LTLPLP + TVT A+ + P+ V L K +DL
Sbjct: 472 VCPVCNTVSITFDPFMDLTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIEDL 531
Query: 536 ILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAE-LISSIKDDEHIVAYRFDR--KQGG 592
+ ++ +L+ E Y + +RF ++ L+ I +++ I Y +R + G
Sbjct: 532 VKYVAEKSGCSDYRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGS 591
Query: 593 KIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 635
L V + S + + FG P V L + ++ A
Sbjct: 592 DDILVPVYHISDDSTNSANSYMSSRDFGHPFVLQLSDNEVTDA 634
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/182 (48%), Positives = 117/182 (64%), Gaps = 8/182 (4%)
Query: 739 PSYIKDLPVVHKTGFTVKKTRQE---AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
P + L + KT + KK E I+L CLD F E LG +D WYCP CKE RQA
Sbjct: 798 PQMGRSLWLESKTILSDKKDDSEDSRTITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQA 857
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY-----MKSKDGESY 850
+K++++W P++L+FHLKRFS R ++K+D V FPI NLD+S + K+
Sbjct: 858 SKQMEIWRCPEILIFHLKRFSSERRFRDKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKL 917
Query: 851 VYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 910
+Y+L+A+ NHYGGLGGGHYTA+AK D ++Y FDDS V+PV + TSAAY+LFYRR
Sbjct: 918 IYELYAVDNHYGGLGGGHYTAFAKNPDNGQFYCFDDSRVTPVCPEETVTSAAYLLFYRRK 977
Query: 911 KS 912
S
Sbjct: 978 TS 979
>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32
PE=1 SV=1
Length = 1604
Score = 267 bits (682), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 170/509 (33%), Positives = 257/509 (50%), Gaps = 81/509 (15%)
Query: 87 ERPGPIDNSDII-----QNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYKGGP 141
++PG IDN ++ + + + EG L+ L G+DY +VP+ VW L+ WY
Sbjct: 519 QKPGAIDNQPLVTQEPVKATSLTLEGGRLKRTPQLIHGRDYEMVPEPVWRALYHWYGANL 578
Query: 142 ALPRKMISEGIVNEKRVEVFXLCLKLIDSRDNSQTVIR---------------------- 179
ALPR +I + +E+F L + + ++T
Sbjct: 579 ALPRPVIKNSKTDIPELELFPRYLLFLRQQPATRTQQSNIWVNMGNVPSPNAPLKRVLAY 638
Query: 180 ---LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236
S+ + ++++E + + I++E R+W Y N + + LD D L+
Sbjct: 639 TGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLY-NSENYLTLLDDEDHKLE--------- 688
Query: 237 ILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGS 296
L++Q + + ++ D++ P E S
Sbjct: 689 -YLKIQDEQHLVIEVRNKDMSW-PEEMS-------------------------------- 714
Query: 297 TFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDE 355
F+ D + K + G GL NLGNTCFMNS++QC+ +T L QYF+ G + E
Sbjct: 715 -FIANSSKIDRH---KVPTEKGATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYE 770
Query: 356 INTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELL 415
+N NP+GM G +A +GDL+++LWS + VAP + +A++AP+F+G+ Q DSQELL
Sbjct: 771 LNRTNPIGMKGHMAKCYGDLVQELWSGTQKNVAPLKLRWTIAKYAPRFNGFQQQDSQELL 830
Query: 416 AFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475
AFLLDGLHEDLNRV +KPY+E+KDS GRPD EVA E W NH RN S++VD+F GQ +S
Sbjct: 831 AFLLDGLHEDLNRVHEKPYVELKDSDGRPDWEVAAEAWDNHLRRNRSIVVDLFHGQLRSQ 890
Query: 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL 535
+ C C +S+ FDPF +L+LPLP + +TV +G+ P+ + + L L
Sbjct: 891 VKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGT-TPVRYGLRLNMDEKYTGL 949
Query: 536 ILALSTACCLKIDEGLLLAEVYNHQIFRF 564
LS C L E +LLAEV+ I F
Sbjct: 950 KKQLSDLCGLN-SEQILLAEVHGSNIKNF 977
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 749 HKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVL 808
H++ ++ + E I+L SCL AF +EE LG ++M+YC +CK H ATKKLDLW LP +L
Sbjct: 1219 HESVEQSRRAQAEPINLDSCLRAFTSEEELGENEMYYCSKCKTHCLATKKLDLWRLPPIL 1278
Query: 809 VFHLKRFSY--SRYLKNKLDTFVNFPILNLDLSKYMKSKD 846
+ HLKRF + R++K++ V FP + D S ++ +D
Sbjct: 1279 IIHLKRFQFVNGRWIKSQ--KIVKFPRESFDPSAFLVPRD 1316
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 851 VYDLFAISNHYGGLGGGHYTAYAKLIDEN-RWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
+Y+L+AIS H G LGGGHY YAK + N +WY ++DS + +I T +AY+LFY +
Sbjct: 1509 IYNLYAISCHSGILGGGHYVTYAK--NPNCKWYCYNDSSCKELHPDEIDTDSAYILFYEQ 1566
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 19 PCTPDEERQIVQD-LKNQSDLDLKEGNLYFLISTRWYRSWERYV 61
P TP+EE QI++ L+ +S L+ G+ +F+IS +W++ W+ YV
Sbjct: 368 PATPEEEGQIIRGWLERESRYGLQAGHNWFIISMQWWQQWKEYV 411
>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 OS=Homo sapiens GN=USP19
PE=1 SV=2
Length = 1318
Score = 249 bits (636), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/294 (46%), Positives = 176/294 (59%), Gaps = 8/294 (2%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 376
G GL NLGNTCFMNS +Q L +T +L +F + EIN NPLG G LA+ F LL
Sbjct: 495 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 554
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
R LW A P K +A A QF+GY QHD+QE +AFLLDGLHEDLNR++ KPY E
Sbjct: 555 RALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 614
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
DS GRPDE VA E W+ HK RNDS IVD+FQGQYKS LVCPVC+KVSITFDPF+YL +
Sbjct: 615 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 674
Query: 497 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL-ALSTACCLKIDEGLLLAE 555
PLP + + V F P+ F V++ K +L +LS + +K E L LAE
Sbjct: 675 PLPQK-QKVLPVFYFAREPHSKPIKFLVSVSKENSTASEVLDSLSQSVHVK-PENLRLAE 732
Query: 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGK---IKLEIVNRWQEKS 606
V ++ R F P+ + ++ + ++ + + K + LE+ R Q S
Sbjct: 733 VIKNRFHRVFL-PSHSLDTVSPSDTLLCFELLSSELAKERVVVLEVQQRPQVPS 785
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 113/182 (62%), Gaps = 9/182 (4%)
Query: 743 KDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLW 802
K+L G + R +L CL+ F E L P++ WYCPQCK+HR+A+K+L LW
Sbjct: 1038 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1097
Query: 803 MLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKY-MKSKDGESYVYDLFAISNH 860
LP+VL+ LKRFS+ ++ ++K++ V FP+ NLDLSK+ + K+ + YDL+A+ NH
Sbjct: 1098 RLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINH 1157
Query: 861 YGGLGGGHYTAYAKLIDENR-------WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913
YGG+ GGHYTA A+L ++ W FDDS V+ V E + T AYVLFYRR S
Sbjct: 1158 YGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSP 1217
Query: 914 TK 915
+
Sbjct: 1218 VE 1219
>sp|Q3UJD6|UBP19_MOUSE Ubiquitin carboxyl-terminal hydrolase 19 OS=Mus musculus GN=Usp19
PE=2 SV=1
Length = 1360
Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 176/294 (59%), Gaps = 8/294 (2%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 376
G GL NLGNTCFMNS +Q L +T +L +F + EIN NPLG G LA+ F LL
Sbjct: 537 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 596
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
R LW A P K +A A QF+GY QHD+QE +AFLLDGLHEDLNR++ KPY E
Sbjct: 597 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 656
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
DS GRPDE VA E W+ HK RNDS IVD+FQGQYKS LVCPVC+KVSITFDPF+YL +
Sbjct: 657 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 716
Query: 497 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL-ALSTACCLKIDEGLLLAE 555
PLP + + + F P+ F V++ K +L +LS + +K E L LAE
Sbjct: 717 PLPQK-QKVLPIFYFAREPHSKPIKFLVSVSKENSSASEVLDSLSQSVHVK-PENLRLAE 774
Query: 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGK---IKLEIVNRWQEKS 606
V ++ R F P+ + ++ + ++ + + K + LE+ R Q S
Sbjct: 775 VIKNRFHRVF-LPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQVPS 827
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 117/193 (60%), Gaps = 10/193 (5%)
Query: 743 KDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLW 802
K+L G + R +L CL+ F E L P++ WYCPQCK+HR+A+K+L LW
Sbjct: 1080 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1139
Query: 803 MLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKY-MKSKDGESYVYDLFAISNH 860
LP+VL+ LKRFS+ ++ ++K++ V FP+ NLDLSK+ + K+ + YDL+A+ NH
Sbjct: 1140 RLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINH 1199
Query: 861 YGGLGGGHYTAYAKLIDENR-------WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913
YGG+ GGHYTA A+L ++ W FDDS V+ V E + T AYVLFYRR S
Sbjct: 1200 YGGMIGGHYTACARLPNDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSP 1259
Query: 914 T-KAEMAETSQGH 925
+ A S+ H
Sbjct: 1260 VERPPRASHSEHH 1272
>sp|Q6J1Y9|UBP19_RAT Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus
GN=Usp19 PE=1 SV=1
Length = 1357
Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 176/294 (59%), Gaps = 8/294 (2%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 376
G GL NLGNTCFMNS +Q L +T +L +F + EIN NPLG G LA+ F LL
Sbjct: 534 GFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPLGTGGRLAIGFAVLL 593
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
R LW A P K +A A QF+GY QHD+QE +AFLLDGLHEDLNR++ KPY E
Sbjct: 594 RALWKGTHQAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTE 653
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
DS GRPDE VA E W+ HK RNDS IVD+FQGQYKS LVCPVC+KVSITFDPF+YL +
Sbjct: 654 TVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVCAKVSITFDPFLYLPV 713
Query: 497 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL-ALSTACCLKIDEGLLLAE 555
PLP + + + F P+ F V++ K +L +LS + +K E L LAE
Sbjct: 714 PLPQK-QKVLPIYYFAREPHSKPIKFLVSVSKENSSASEVLESLSQSVHVK-PESLRLAE 771
Query: 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGK---IKLEIVNRWQEKS 606
V ++ R F P+ + ++ + ++ + + K + LE+ R Q S
Sbjct: 772 VIKNRFHRVF-LPSHSLDAVSPTDVLLCFELLSPELAKERVVVLEVQQRPQVPS 824
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 13/191 (6%)
Query: 743 KDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLW 802
K+L G + R +L CL+ F E L P++ WYCPQCK+HR+A+K+L LW
Sbjct: 1077 KELECAEDPGSAGEAARAGHFTLDQCLNLFTRPEVLAPEEAWYCPQCKQHREASKQLLLW 1136
Query: 803 MLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKY-MKSKDGESYVYDLFAISNH 860
LP+VL+ LKRFS+ ++ ++K++ V FP+ NLDLSK+ + K+ + YDL+A+ NH
Sbjct: 1137 RLPNVLIVQLKRFSFRSFIWRDKINDLVEFPVRNLDLSKFCIGQKEEQLPSYDLYAVINH 1196
Query: 861 YGGLGGGHYTAYAKLIDENR-------WYHFDDSHVSPVSEGDIKTSAAYVLFYRR---- 909
YGG+ GGHYTA A+L + W FDDS V+ V E + T AYVLFYRR
Sbjct: 1197 YGGMIGGHYTACARLPSDRSSQRSDVGWRLFDDSTVTTVDESQVVTRYAYVLFYRRRNSP 1256
Query: 910 VKSKTKAEMAE 920
V+ +A AE
Sbjct: 1257 VERPPRAAHAE 1267
>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6
PE=1 SV=2
Length = 1406
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 121/248 (48%), Positives = 163/248 (65%), Gaps = 3/248 (1%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLL 376
G GL NLGNTCFMNS++QC+ +T L QYF+ G + E+N NP+GM G +A +GDL+
Sbjct: 530 GATGLSNLGNTCFMNSSIQCVSNTQPLTQYFISGRHLYELNRTNPIGMKGHMAKCYGDLV 589
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
++LWS + +VAP + +A++AP+F G+ Q DSQELLAFLLDGLHEDLNRV +KPY+E
Sbjct: 590 QELWSGTQKSVAPLKLRRTIAKYAPKFDGFQQQDSQELLAFLLDGLHEDLNRVHEKPYVE 649
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
+KDS GRPD EVA E W NH RN S+IVD+F GQ +S + C C +S+ FDPF +L+L
Sbjct: 650 LKDSDGRPDWEVAAEAWDNHLRRNRSIIVDLFHGQLRSQVKCKTCGHISVRFDPFNFLSL 709
Query: 497 PLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEV 556
PLP + +TV +G+ P+ + + L L L C L E +LLAEV
Sbjct: 710 PLPMDSYMDLEITVIKLDGT-TPVRYGLRLNMDEKYTGLKKQLRDLCGLN-SEQILLAEV 767
Query: 557 YNHQIFRF 564
++ I F
Sbjct: 768 HDSNIKNF 775
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 57/98 (58%)
Query: 749 HKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVL 808
H++ ++ + E I+L SCL AF +EE LG +M+YC +CK H ATKKLDLW LP L
Sbjct: 1017 HESVEQSRRAQAEPINLDSCLRAFTSEEELGESEMYYCSKCKTHCLATKKLDLWRLPPFL 1076
Query: 809 VFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD 846
+ HLKRF + K V F + D S ++ +D
Sbjct: 1077 IIHLKRFQFVNDQWIKSQKIVRFLRESFDPSAFLVPRD 1114
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 851 VYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
+Y+L+AIS H G L GGHY YAK + +WY ++DS + +I T +AY+LFY +
Sbjct: 1311 IYNLYAISCHSGILSGGHYITYAKNPN-CKWYCYNDSSCEELHPDEIDTDSAYILFYEQ 1368
>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43
PE=2 SV=2
Length = 1132
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 191/696 (27%), Positives = 308/696 (44%), Gaps = 115/696 (16%)
Query: 286 FNQYPG---SSFGSTFMDMDDGYDSYNTAKKGEKG-GLAGLQNLGNTCFMNSALQCLVHT 341
F PG +S GS D G ++ G + G GL+N GNTCFMN+ +QCL +T
Sbjct: 63 FACAPGPAPASAGSPGPDRPPGSQPQISSGDGARPPGAQGLKNHGNTCFMNAVVQCLSNT 122
Query: 342 PDLAQYF-LGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400
LA++ LG Y E+ L+R LW+ FK ++++
Sbjct: 123 DLLAEFLALGRYRAAPG-------RAEVTEQLAALVRALWTREYTPQLSAEFKNAVSKYG 175
Query: 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 460
QF G +QHD+ E L +LLD +HEDL E P+ +E + A
Sbjct: 176 SQFQGNSQHDALEFLLWLLDRVHEDLEGSAHGLVSEQLP----PEVSKISEDLRPSAAPT 231
Query: 461 D---SLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSG 517
S + FQ QY+S+L CP C K S TFDPF+ ++LP+P TR ++VT+ + + S
Sbjct: 232 SLGPSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLCVSLPIPLRQTRFLSVTLVFPSKS- 290
Query: 518 LPMPFTVTLMKHGCCKDLILALSTACCLKIDEG------LLLAEVYNHQIFR-FFENPAE 570
++ G ++ ++ + +EG ++L E+Y + R FF+ E
Sbjct: 291 ------QRFLRVGLAVPILSTVAALRKMVAEEGGVPAEEVILVELYPNGFQRSFFDE--E 342
Query: 571 LISSIKDDEHIVAYRFDRKQG-GKIK-----LEIVNRWQEKSASDYL------------- 611
+++I + +++ A++ G G + L + R + + +
Sbjct: 343 DLNTIAEGDNVYAFQVPPSPGLGTLSAHPSGLSVSPRLPVRDSQRFSGPLHSENRVVFLF 402
Query: 612 -----KGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFL 666
G + FG P + E+ +S A + + + L R+ SA+ G F
Sbjct: 403 CNLVGSGQQASRFGPPFLIR-EDRTISWAQLQQCILSKVRCLMRSEVSAQDLG---TLF- 457
Query: 667 PEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD-SILKPG--KHI 723
S+ L CS LS D R + + + +PG H+
Sbjct: 458 -------------SIRVVGLSLACS-----YLSPKDNRPLCHWAVDRALHLRRPGGPPHV 499
Query: 724 KVLLDWTDDVHELYDPSY----IKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 779
K+ ++W V E S ++D V + + +Q + +L C ++ EE L
Sbjct: 500 KLAVEWDSSVTERLFGSLQEERVQDADSVWRQ---QQAHQQPSCTLDECFQSYTKEEQLA 556
Query: 780 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLS 839
DD W CP C+ +Q KL LW LPD+L+ HLKRF +NKL T V FP+ L+++
Sbjct: 557 QDDAWKCPHCQVLQQGVVKLSLWTLPDILIIHLKRFCQVGERRNKLSTLVKFPLSGLNMA 616
Query: 840 KYMKSKDGES-----------------------YVYDLFAISNHYGGLGGGHYTAYAKLI 876
++ + S ++YDL+A+ NH+G L GGHYTAY +
Sbjct: 617 PHVARRSTNSKAGPGPWSSWKQPICLPTTYPLDFLYDLYAVCNHHGSLQGGHYTAYCRNS 676
Query: 877 DENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKS 912
+ +WY +DDS V + E ++ T AY+LFY++ S
Sbjct: 677 LDGQWYSYDDSTVEALREDEVNTRGAYILFYQKRNS 712
>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43
PE=1 SV=2
Length = 1123
Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 188/665 (28%), Positives = 294/665 (44%), Gaps = 121/665 (18%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYF-LGDYSDEINTENPLGMHGELALAFGDLL 376
G GL+N GNTCFMN+ +QCL +T LA++ LG Y E+ L+
Sbjct: 99 GAQGLKNHGNTCFMNAVVQCLSNTDLLAEFLALGRYRAAPG-------RAEVTEQLAALV 151
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
R LW+ FK ++++ QF G +QHD+ E L +LLD +HEDL + P E
Sbjct: 152 RALWTREYTPQLSAEFKNAVSKYGSQFQGNSQHDALEFLLWLLDRVHEDLEGSSRGPVSE 211
Query: 437 MKDSGGRPDEEVANECWKNHKAR---NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMY 493
P+ +E + A+ S + FQ QY+S+L CP C K S TFDPF+
Sbjct: 212 KLP----PEATKTSENCLSPSAQLPLGQSFVQSHFQAQYRSSLTCPHCLKQSNTFDPFLC 267
Query: 494 LTLPLPSTVTRTMTVTVFYANGS------GLPMPFTVTLMKHGCCKDLILALSTACCLKI 547
++LP+P TR ++VT+ + + S GL +P T+ L ++ +
Sbjct: 268 VSLPIPLRQTRFLSVTLVFPSKSQRFLRVGLAVPILSTVAA------LRKMVAEEGGVPA 321
Query: 548 DEGLLLAEVYNHQIFR-FFENPAELISSIKDDEHIVAY---------------------- 584
DE ++L E+Y R FF+ E +++I + +++ A+
Sbjct: 322 DE-VILVELYPSGFQRSFFDE--EDLNTIAEGDNVYAFQVPPSPSQGTLSAHPLGLSASP 378
Query: 585 RFDRKQGGKIKLEIVNRWQEKSASDYL--------KGSERKLFGAPLVTYLEEEHLSGAD 636
R ++G + L + S S L G + FG P + E+ +S A
Sbjct: 379 RLAAREGQRFSLSL------HSESKVLILFCNLVGSGQQASRFGPPFLIR-EDRAVSWAQ 431
Query: 637 IDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSF 696
+ ++ LS +R S + F S+ L CS
Sbjct: 432 LQQSI---LSKVRHLMKSEAPVQNLGSLF--------------SIRVVGLSVACS----- 469
Query: 697 QLSLTDERISSCKPIQKDSIL---KPG--KHIKVLLDWTDDVHE-LYDPSYIKDLPVVHK 750
LS D R + D +L +PG H+K+ ++W V E L+ +
Sbjct: 470 YLSPKDSRPLCHWAV--DRVLHLRRPGGPPHVKLAVEWDSSVKERLFGSLQEERAQDADS 527
Query: 751 TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVF 810
+ +Q + +L C + EE L DD W CP C+ +Q KL LW LPD+L+
Sbjct: 528 VWQQQQAHQQHSCTLDECFQFYTKEEQLAQDDAWKCPHCQVLQQGMVKLSLWTLPDILII 587
Query: 811 HLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGES--------------------- 849
HLKRF +NKL T V FP+ L+++ ++ +
Sbjct: 588 HLKRFCQVGERRNKLSTLVKFPLSGLNMAPHVAQRSTSPEAGLGPWPSWKQPDCLPTSYP 647
Query: 850 --YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
++YDL+A+ NH+G L GGHYTAY + + +WY +DDS V P+ E ++ T AY+LFY
Sbjct: 648 LDFLYDLYAVCNHHGNLQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFY 707
Query: 908 RRVKS 912
++ S
Sbjct: 708 QKRNS 712
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP12 PE=1
SV=1
Length = 1254
Score = 223 bits (568), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 138/351 (39%), Positives = 184/351 (52%), Gaps = 31/351 (8%)
Query: 304 GYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPL 362
Y +YN + G GL NLGNTC+MNSALQCLVH P L YFL D Y DEIN ENPL
Sbjct: 350 NYFAYNKLEPA--SGTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPL 407
Query: 363 GMHGELALAFGDLLRKLWSSG------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
G HG +A AF DL++KL+ + AA P FK + F FSGY Q DSQE LA
Sbjct: 408 GYHGYVARAFSDLVQKLFQNRMSIMQRNAAFPPSMFKSTIGHFNSMFSGYMQQDSQEFLA 467
Query: 417 FLLDGLHEDLNRVKQKPYIEMKDSGGRPD-------EEVANECWKNHKARNDSLIVDVFQ 469
FLLD LHEDLNR+ +K Y E D +++A++ W+ H RN S+I D+F
Sbjct: 468 FLLDSLHEDLNRIIKKEYTEKPSLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITDLFV 527
Query: 470 GQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKH 529
G YKSTL CP C VSITFDP+ +TLPLP T+ +F N P+ V L K
Sbjct: 528 GMYKSTLYCPECQNVSITFDPYNDVTLPLPVDTVWDKTIKIFPMNSP--PLLLEVELSKS 585
Query: 530 GCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAE------LISSIKDDEHIVA 583
DL + L + L E++++QI+ +E+ L IK + ++
Sbjct: 586 STYMDLKNYVGKMSGLDPN-TLFGCEIFSNQIYVNYESTESNAQFLTLQELIKPADDVIF 644
Query: 584 YRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 634
Y ++ + ++N EK + + LFG P L+E+ L+
Sbjct: 645 YELPVTNDNEVIVPVLNTRIEKGYKNAM------LFGVPFFITLKEDELNN 689
Score = 159 bits (403), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 759 RQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS 818
++ I+L CL F E LG D WYCP CKEHRQATK++ LW PD+L+ HLKRF
Sbjct: 958 KERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQ 1017
Query: 819 RYLKNKLDTFVNFPILNLDLSKYMKSKDG-ESYVYDLFAISNHYGGLGGGHYTAYAKLID 877
R +K+D VNFPI +LDLS+Y+ KD +YDL+A+ NHYGGLGGGHYTAY K
Sbjct: 1018 RSFSDKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFA 1077
Query: 878 ENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
+N+WY+FDDS V+ + + +AY+LFY R
Sbjct: 1078 DNKWYYFDDSRVTETAPENSIAGSAYLLFYIR 1109
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8
PE=1 SV=1
Length = 1118
Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 126/194 (64%), Gaps = 1/194 (0%)
Query: 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAF 372
G L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A F
Sbjct: 771 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 830
Query: 373 GDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK 432
G +++ LW+ ++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ +
Sbjct: 831 GIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNR 890
Query: 433 PYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFM 492
+ +++ D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FM
Sbjct: 891 KRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFM 950
Query: 493 YLTLPLPSTVTRTM 506
YL+LPL ST T+
Sbjct: 951 YLSLPLASTSKCTL 964
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+L CL F EE L ++ +YC C+ R + KK+++W LP VL+ HLKRFSY K
Sbjct: 963 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 1022
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 883
KL T V+FP+ NLDLS+Y+ Y+LF++SNHYGGL GGHYTAY K RW+
Sbjct: 1023 KLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 1082
Query: 884 FDDSHVSPVSEGDIKTSAAYVLFY 907
FDD VS +S +K+SAAY+LFY
Sbjct: 1083 FDDHEVSDISVSSVKSSAAYILFY 1106
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8
PE=1 SV=2
Length = 1080
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 1/194 (0%)
Query: 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAF 372
G L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A F
Sbjct: 733 GSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEF 792
Query: 373 GDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK 432
G +++ LW+ ++P+ FK + + QF+G +Q DSQELL FL+DGLHEDLN+ +
Sbjct: 793 GIIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNR 852
Query: 433 PYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFM 492
+ +++ D + A W+ HK N+S+IV +FQGQ+KST+ C C + S TF+ FM
Sbjct: 853 KRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFM 912
Query: 493 YLTLPLPSTVTRTM 506
YL+LPL ST T+
Sbjct: 913 YLSLPLASTSKCTL 926
Score = 143 bits (361), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/144 (49%), Positives = 94/144 (65%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+L CL F EE L ++ +YC C+ R + KK+++W LP VL+ HLKRFSY K
Sbjct: 925 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 984
Query: 824 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYH 883
KL T V+FP+ NLDLS+Y+ Y+LF++SNHYGGL GGHYTAY K RW+
Sbjct: 985 KLQTSVDFPLENLDLSQYVIGPKNSLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFK 1044
Query: 884 FDDSHVSPVSEGDIKTSAAYVLFY 907
FDD VS +S +++SAAY+LFY
Sbjct: 1045 FDDHEVSDISVSSVRSSAAYILFY 1068
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Fragment) OS=Canis
familiaris GN=USP11 PE=2 SV=1
Length = 445
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/190 (45%), Positives = 122/190 (64%), Gaps = 8/190 (4%)
Query: 725 VLLDWTDDVHELYDPSYIKDLPVVHK-TGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 783
+ +DW ++ + Y + V H G+ +KK + L C++ F T E L ++
Sbjct: 225 IAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKA---PVRLQECIELFTTVETLEKENP 281
Query: 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843
W+CP CK+H+ ATKKLDLWMLP+ L+ HLKRFSY+++ + KLDT V FPI +LD S+++
Sbjct: 282 WFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVI 341
Query: 844 SKDGES----YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT 899
ES Y YDL A+SNHYGGL GHYT +A D + +FDD+ VSPV+E I++
Sbjct: 342 KPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQSDYFDDNSVSPVTENQIES 401
Query: 900 SAAYVLFYRR 909
AAYVLFY+R
Sbjct: 402 KAAYVLFYQR 411
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 114/184 (61%), Gaps = 4/184 (2%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 376
GL GL+NLGNTCFMNS LQCL +T +L Y L + Y ++N N M L F L+
Sbjct: 17 GLTGLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLN--NNSRMRTALMSEFAKLI 74
Query: 377 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 435
+ LW SS +V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P
Sbjct: 75 QLLWTSSPNDSVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHGEVNRVLVRPRA 134
Query: 436 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 495
PD+E + + W+ ++ R DS + D+F GQ KS+L C C S FDPF L+
Sbjct: 135 NADTLDHLPDDEKSRQMWRRYQEREDSRVSDLFVGQLKSSLTCSECGYCSTAFDPFWDLS 194
Query: 496 LPLP 499
LP+P
Sbjct: 195 LPIP 198
Score = 133 bits (334), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 9/171 (5%)
Query: 737 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 796
+DP + LP+ K G+ ++L CL F E+ L D+ C +CK + T
Sbjct: 187 FDPFWDLSLPIPKK-GYG-------EVTLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCT 238
Query: 797 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFA 856
KK + P +LV HLKRFS +R +KL TFVNFP+ +LDL ++ S+ VY+L+A
Sbjct: 239 KKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLKDLDLREF-ASQSCNHAVYNLYA 297
Query: 857 ISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
+SNH G GGHYTAY K + W+ F+DS V+P+S +++S AY+LFY
Sbjct: 298 VSNHSGTTMGGHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFY 348
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 376
GLAGL+NLGNTCFMNS LQCL +T +L Y L Y ++ + H L F L+
Sbjct: 273 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 330
Query: 377 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 435
+ +W SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P
Sbjct: 331 QTIWTSSPNDVVSPSEFKTQIQRYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVAARPKA 390
Query: 436 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 495
+ PDEE + W+ + R DS I D+F GQ KS+L C C S FDPF L+
Sbjct: 391 SPETLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 450
Query: 496 LPL 498
LP+
Sbjct: 451 LPI 453
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 442 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDILDGDEKPTCCRCRARKRC 493
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 494 IKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLY 552
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 553 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 604
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 4/183 (2%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 376
GLAGL+NLGNTCFMNS LQCL +T +L Y L Y ++ + H L F L+
Sbjct: 278 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLGHTS--SAHTALMEEFAKLI 335
Query: 377 RKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI 435
+ +W SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV +P
Sbjct: 336 QTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVAARPKP 395
Query: 436 EMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLT 495
+ PDEE + W+ + R DS I D+F GQ KS+L C C S FDPF L+
Sbjct: 396 SPESLDHLPDEEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLS 455
Query: 496 LPL 498
LP+
Sbjct: 456 LPI 458
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 447 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRC 498
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 499 IKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLY 557
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 558 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 609
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 110/187 (58%), Gaps = 12/187 (6%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQY-----FLGDYSDEINTENPLGMHGELALAF 372
GLAGL+NLGNTCFMNS LQCL +T +L Y +L D S H L F
Sbjct: 266 GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSSRA------HTALMEEF 319
Query: 373 GDLLRKLW-SSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ 431
L++ +W SS V+P FK ++ R+AP+F GYNQ D+QE L FLLDGLH ++NRV
Sbjct: 320 AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVIA 379
Query: 432 KPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPF 491
+P ++ PD+E + W+ + R DS I D+F GQ KS+L C C S FDPF
Sbjct: 380 RPKSNTENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPF 439
Query: 492 MYLTLPL 498
L+LP+
Sbjct: 440 WDLSLPI 446
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 101/172 (58%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 435 VFDPFWDLSLPIT-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRARKRC 486
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL FVNFP+ +LDL ++ S++ VY+L+
Sbjct: 487 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTAFVNFPLRDLDLREFA-SENTNHAVYNLY 545
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS VSP+S ++TS AY+LFY
Sbjct: 546 AVSNHSGTTMGGHYTAYCRSPVTGEWHTFNDSSVSPMSSSQVRTSDAYLLFY 597
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 12/213 (5%)
Query: 288 QYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQY 347
Q PG S S+ G D N+ GLAGL+NLGNTCFMNS LQCL +T +L Y
Sbjct: 243 QAPGPSRSSS-----PGRDGMNSK---SAQGLAGLRNLGNTCFMNSILQCLSNTRELRDY 294
Query: 348 FLGD-YSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLARFAPQFSG 405
L Y +++ + H L F L++ +W SS V+P FK ++ R+AP+F G
Sbjct: 295 CLQRLYMRDLHHGS--NAHTALVEEFAKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVG 352
Query: 406 YNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIV 465
YNQ D+QE L FLLDGLH ++NRV +P ++ PD+E + W+ + R DS I
Sbjct: 353 YNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIG 412
Query: 466 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPL 498
D+F GQ KS+L C C S FDPF L+LP+
Sbjct: 413 DLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPI 445
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 9/172 (5%)
Query: 736 LYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795
++DP + LP+ K G+ ++L C+ F E+ L D+ C +C+ ++
Sbjct: 434 VFDPFWDLSLPIA-KRGY-------PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRC 485
Query: 796 TKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLF 855
KK + P +LV HLKRFS SR +KL TFVNFP+ +LDL ++ S++ VY+L+
Sbjct: 486 IKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFA-SENTNHAVYNLY 544
Query: 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907
A+SNH G GGHYTAY + W+ F+DS V+P+S ++TS AY+LFY
Sbjct: 545 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFY 596
>sp|Q70CQ4|UBP31_HUMAN Ubiquitin carboxyl-terminal hydrolase 31 OS=Homo sapiens GN=USP31
PE=2 SV=2
Length = 1352
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 700 LTDERISSCKPIQKDSI--LKPG--KHIKVLLDWTDDVHELY----DPSYIKDLPVVHKT 751
L E C PI + ++ PG H+K++++W + + + YI D V
Sbjct: 527 LPQEEQPLCHPIVERALKSCGPGGTAHVKLVVEWDKETRDFLFVNTEDEYIPDAESVR-- 584
Query: 752 GFTVKKTRQ---EAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVL 808
+++ R + +L C + EE L PDD W CP CK+ +Q + L LW LPDVL
Sbjct: 585 ---LQRERHHQPQTCTLSQCFQLYTKEERLAPDDAWRCPHCKQLQQGSITLSLWTLPDVL 641
Query: 809 VFHLKRFSYSRYLKNKLDTFVNFPILNLDLSK----------------------YMKSKD 846
+ HLKRF + KL V FP+ LD++ Y +D
Sbjct: 642 IIHLKRFRQEGDRRMKLQNMVKFPLTGLDMTPHVVKRSQSSWSLPSHWSPWRRPYGLGRD 701
Query: 847 GESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLF 906
E Y+YDL+A+ NH+G + GGHYTAY K + WY FDDS V +SE ++ T AY+LF
Sbjct: 702 PEDYIYDLYAVCNHHGTMQGGHYTAYCKNSVDGLWYCFDDSDVQQLSEDEVCTQTAYILF 761
Query: 907 YRR 909
Y+R
Sbjct: 762 YQR 764
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 132/262 (50%), Gaps = 23/262 (8%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYF-LGDY-----SDEINTENPLGM----HGE 367
G+AGL+N GNTCFMN+ LQCL +T A+Y LG Y + E P G GE
Sbjct: 126 GVAGLRNHGNTCFMNATLQCLSNTELFAEYLALGQYRAGRPEPSPDPEQPAGRGAQGQGE 185
Query: 368 LALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 427
+ L+R LW+ R FK +++ A Q+ G +QHD+QE L +LLD +HEDLN
Sbjct: 186 VTEQLAHLVRALWTLEYTPQHSRDFKTIVSKNALQYRGNSQHDAQEFLLWLLDRVHEDLN 245
Query: 428 R-VKQK---PYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSK 483
VKQ P ++ P+ C + + ++FQ QY+S+L CP C K
Sbjct: 246 HSVKQSGQPPLKPPSETDMMPEGPSFPVC--------STFVQELFQAQYRSSLTCPHCQK 297
Query: 484 VSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC 543
S TFDPF+ ++LP+P TR + VTV Y M V + G L A+S
Sbjct: 298 QSNTFDPFLCISLPIPLPHTRPLYVTVVYQGKCSHCMRIGVAVPLSGTVARLREAVSMET 357
Query: 544 CLKIDEGLLLAEVYNHQIFRFF 565
+ D+ ++L E+Y R F
Sbjct: 358 KIPTDQ-IVLTEMYYDGFHRSF 378
>sp|Q754R5|UBP4_ASHGO Ubiquitin carboxyl-terminal hydrolase 4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=DOA4 PE=3 SV=2
Length = 852
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 107/205 (52%), Gaps = 17/205 (8%)
Query: 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRK 378
GL N GN+C+M+ +QCL+ T +L FL + Y + IN + LG G LA F L+ +
Sbjct: 488 VGLVNCGNSCYMSCIIQCLLGTQELCTMFLNNSYQNHINLNSRLGSKGLLARYFSQLIHQ 547
Query: 379 LWSSGR----------AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNR 428
++ G+ AV P FK F Q D QE FLLDGLHEDLN+
Sbjct: 548 MYQYGKDIRKKMGNEKTAVIPTQFKIACGSINSSFKDNTQQDCQEFCQFLLDGLHEDLNQ 607
Query: 429 VKQKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCS 482
P + E+ + + E + W+ + + S+IVD+FQGQY S L C VC
Sbjct: 608 CGNNPPLKELSEEAEKMREMMPMRLASAIEWERYLTTDFSVIVDLFQGQYASQLQCKVCQ 667
Query: 483 KVSITFDPFMYLTLPLPSTVTRTMT 507
+ S T+ PF L++P+PST T T+T
Sbjct: 668 RTSTTYQPFSVLSVPVPSTRTCTLT 692
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 84/165 (50%), Gaps = 19/165 (11%)
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+L C F E L ++ W CP CK+ + +TKK+ + LP L+ HLKRF + N
Sbjct: 690 TLTDCFTEFTKIETLEQEEQWSCPSCKKRQPSTKKITITRLPRNLIIHLKRFD---NMLN 746
Query: 824 KLDTFVNFP-ILNL------DLSKYMKSKDGE--------SYVYDLFAISNHYGGLGGGH 868
K + FV++P +L+L D K + + + E + Y L+ I+ H G L GH
Sbjct: 747 KNNVFVSYPSVLDLTAFWANDYDKKVTNNNVELPSRGQVPPFNYQLYGIACHDGTLRAGH 806
Query: 869 YTAYAKLIDENRWYHFDDSHVSPV-SEGDIKTSAAYVLFYRRVKS 912
YTAY W ++DD++ + S + T AYVLFY R+ S
Sbjct: 807 YTAYVNKGAVLGWCYYDDTNWRQIRSAREYITQNAYVLFYHRIHS 851
>sp|A6ZY34|UBP4_YEAS7 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=DOA4 PE=3 SV=1
Length = 926
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 137/274 (50%), Gaps = 39/274 (14%)
Query: 243 VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMD 302
+ ++M+S G+ A I+PS L+++ +L + T P SS D+D
Sbjct: 512 ISMNLNMNSNGHSSATSTIQPS--CLSLSNNDSLDHTDVT-------PTSSHN---YDLD 559
Query: 303 DGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENP 361
GL+NLGN+C+MN +QC++ T +L Q FL D Y+ IN +
Sbjct: 560 FA---------------VGLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSK 604
Query: 362 LGMHGELALAFGDLLRKLWS-----SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
LG G LA F L+ ++ S + +++P FK F +Q D QE
Sbjct: 605 LGSKGILAKYFARLVHMMYKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQ 664
Query: 417 FLLDGLHEDLNRVKQKPYIE--MKDSGGRPDE---EVANEC-WKNHKARNDSLIVDVFQG 470
FLLDGLHEDLN+ P ++ +++ R ++ +A+ W+ + S+IVD+FQG
Sbjct: 665 FLLDGLHEDLNQCGSNPPLKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQG 724
Query: 471 QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
QY S L C VCS S T+ PF L++P+P +R
Sbjct: 725 QYASRLKCKVCSHTSTTYQPFTVLSIPIPKKNSR 758
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 737 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 796
Y P + +P+ KK + I++ C F E L D+ W CP CK+ + +T
Sbjct: 742 YQPFTVLSIPIP-------KKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCKKRQPST 794
Query: 797 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-DG-------- 847
K+L + LP L+ HLKRF L NK + FV +P L LDL+ + + DG
Sbjct: 795 KQLTITRLPRNLIVHLKRFD---NLLNKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVND 850
Query: 848 ---------ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPV-SEGDI 897
+ Y+L+ ++ H+G L GGHYTAY K + W +FDD+ PV ++ D
Sbjct: 851 DELPIRGQIPPFKYELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADA 910
Query: 898 KTSAAYVLFYRRV 910
S AYVLFY RV
Sbjct: 911 INSNAYVLFYHRV 923
>sp|P32571|UBP4_YEAST Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOA4 PE=1 SV=2
Length = 926
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 137/274 (50%), Gaps = 39/274 (14%)
Query: 243 VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMD 302
+ ++M+S G+ A I+PS L+++ +L + T P SS D+D
Sbjct: 512 ISMNLNMNSNGHSSATSTIQPS--CLSLSNNDSLDHTDVT-------PTSSHN---YDLD 559
Query: 303 DGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENP 361
GL+NLGN+C+MN +QC++ T +L Q FL D Y+ IN +
Sbjct: 560 FA---------------VGLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSK 604
Query: 362 LGMHGELALAFGDLLRKLWS-----SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
LG G LA F L+ ++ S + +++P FK F +Q D QE
Sbjct: 605 LGSKGILAKYFARLVHMMYKEQVDGSKKISISPIKFKLACGSVNSLFKTASQQDCQEFCQ 664
Query: 417 FLLDGLHEDLNRVKQKPYIE--MKDSGGRPDE---EVANEC-WKNHKARNDSLIVDVFQG 470
FLLDGLHEDLN+ P ++ +++ R ++ +A+ W+ + S+IVD+FQG
Sbjct: 665 FLLDGLHEDLNQCGSNPPLKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQG 724
Query: 471 QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
QY S L C VCS S T+ PF L++P+P +R
Sbjct: 725 QYASRLKCKVCSHTSTTYQPFTVLSIPIPKKNSR 758
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 737 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 796
Y P + +P+ KK + I++ C F E L D+ W CP C++ + +T
Sbjct: 742 YQPFTVLSIPIP-------KKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCEKRQPST 794
Query: 797 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-DG-------- 847
K+L + LP L+ HLKRF L NK + FV +P L LDL+ + + DG
Sbjct: 795 KQLTITRLPRNLIVHLKRFD---NLLNKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVND 850
Query: 848 ---------ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPV-SEGDI 897
+ Y+L+ ++ H+G L GGHYTAY K + W +FDD+ PV ++ D
Sbjct: 851 DELPIRGQIPPFKYELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADA 910
Query: 898 KTSAAYVLFYRRV 910
S AYVLFY RV
Sbjct: 911 INSNAYVLFYHRV 923
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 136/274 (49%), Gaps = 39/274 (14%)
Query: 243 VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMD 302
+ ++M+S G+ A I+PS L+++ +L + T P SS D+D
Sbjct: 512 ISMNLNMNSNGHSSATSTIQPS--CLSLSNNDSLDHTDVT-------PTSSHN---YDLD 559
Query: 303 DGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENP 361
GL+NLGN+C+MN +QC++ T +L Q FL D Y+ IN +
Sbjct: 560 FA---------------VGLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSK 604
Query: 362 LGMHGELALAFGDLLRKLWS-----SGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
LG G LA F L+ ++ S + ++P FK F +Q D QE
Sbjct: 605 LGSKGILAKYFARLVHMMYKEQVDGSKKIPISPIKFKLACGSVNSLFKTASQQDCQEFCQ 664
Query: 417 FLLDGLHEDLNRVKQKPYIE--MKDSGGRPDE---EVANEC-WKNHKARNDSLIVDVFQG 470
FLLDGLHEDLN+ P ++ +++ R ++ +A+ W+ + S+IVD+FQG
Sbjct: 665 FLLDGLHEDLNQCGSNPPLKELSQEAEARREKLSLRIASSIEWERFLTTDFSVIVDLFQG 724
Query: 471 QYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
QY S L C VCS S T+ PF L++P+P +R
Sbjct: 725 QYASRLKCKVCSHTSTTYQPFTVLSIPIPKKNSR 758
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 30/193 (15%)
Query: 737 YDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQAT 796
Y P + +P+ KK + I++ C F E L D+ W CP C++ + +T
Sbjct: 742 YQPFTVLSIPIP-------KKNSRNNITIEDCFREFTKCENLEVDEQWLCPHCEKRQPST 794
Query: 797 KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-DG-------- 847
K+L + LP L+ HLKRF L NK + FV +P L LDL+ + + DG
Sbjct: 795 KQLTITRLPRNLIVHLKRFD---NLLNKNNDFVIYPFL-LDLTPFWANDFDGVFPPGVND 850
Query: 848 ---------ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPV-SEGDI 897
+ Y+L+ ++ H+G L GGHYTAY K + W +FDD+ PV ++ D
Sbjct: 851 DELPIRGQIPPFKYELYGVACHFGTLYGGHYTAYVKKGLKKGWLYFDDTKYKPVKNKADA 910
Query: 898 KTSAAYVLFYRRV 910
S AYVLFY RV
Sbjct: 911 INSNAYVLFYHRV 923
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 127/270 (47%), Gaps = 32/270 (11%)
Query: 256 LALVPIEPS---RSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAK 312
LAL P P+ +SL GG G T + P +S GS M + + +
Sbjct: 142 LALRPEPPTLRRSTSLRRLGG---FPGPPTLFSIRTEPPASHGSFHMISARSSEPFYSDD 198
Query: 313 KGEK------GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMH 365
K G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G
Sbjct: 199 KMAHHTLLLGSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRA 255
Query: 366 GELALAFGDLLRKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHE 424
EL AF D++ LW AV P F+ ++ P FSGY+Q D+QE L L++ LH
Sbjct: 256 QELTEAFADVIGALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHL 315
Query: 425 DLNRVKQK--------PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQ 469
++NR ++ P GG D++ AN WK + R DS IVD+F
Sbjct: 316 EINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFV 375
Query: 470 GQYKSTLVCPVCSKVSITFDPFMYLTLPLP 499
GQ KS L C C S TF+ F L+LP+P
Sbjct: 376 GQLKSCLKCQACGYRSTTFEVFCDLSLPIP 405
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 8/161 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 404 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 458
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 459 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 517
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 518 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 376
G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 377 RKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRV-KQKPY 434
LW AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++ P
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 435 IEMKDSGGRP--------------DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480
I P D++ AN WK + R DS IVD+F GQ KS L C
Sbjct: 327 ILASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 481 CSKVSITFDPFMYLTLPLP 499
C S TF+ F L+LP+P
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C + F EE L ++ C +C++ ++TKKL + P +
Sbjct: 404 IPKKGFAGGK-----VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 458
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 459 LVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 517
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTK 915
HYTA + + W+ ++DS VSPVSE + +S YVLFY+ ++ +
Sbjct: 518 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPPR 563
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 376
G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 377 RKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK--- 432
LW AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 433 -----PYIEMKDSGGR-------PDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480
P GG D++ AN WK + R DS IVD+F GQ KS L C
Sbjct: 327 ILASGPVPSPPRRGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQA 386
Query: 481 CSKVSITFDPFMYLTLPLP 499
C S TF+ F L+LP+P
Sbjct: 387 CGYRSTTFEVFCDLSLPIP 405
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C F EE L ++ C +C++ ++TKKL + P +
Sbjct: 404 IPKKGFAGGK-----VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 458
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 459 LVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDFASDKVG-SPVYQLYALCNHSGSVHYG 517
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 518 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 556
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLG-DYSDEINTENPLGMHGELALAFGDLL 376
G GL+NLGNTCF+N+ LQCL T L + L D+ E+ G EL AF D++
Sbjct: 210 GHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGG---GRAQELTEAFADVI 266
Query: 377 RKLWSSGRA-AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQK--- 432
LW AV P F+ ++ P FSGY+Q D+QE L L++ LH ++NR ++
Sbjct: 267 GALWHPDSCEAVNPTRFRAVFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPP 326
Query: 433 -----PYIEMKDSGGRP--------DEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 479
P GG D++ AN WK + R DS IVD+F GQ KS L C
Sbjct: 327 ILASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLEREDSKIVDLFVGQLKSCLKCQ 386
Query: 480 VCSKVSITFDPFMYLTLPLP 499
C S TF+ F L+LP+P
Sbjct: 387 ACGYRSTTFEVFCDLSLPIP 406
Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Query: 748 VHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDV 807
+ K GF K +SL C F EE L ++ C +C++ ++TKKL + P +
Sbjct: 405 IPKKGFAGGK-----VSLRDCFSLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRI 459
Query: 808 LVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGG 867
LV HL RFS SR K V+FP+ L L + K G S VY L+A+ NH G + G
Sbjct: 460 LVLHLNRFSTSRGSIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGSVHYG 518
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908
HYTA + + W+ ++DS VSPVSE + +S YVLFY+
Sbjct: 519 HYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 557
>sp|A7TGY3|UBP4_VANPO Ubiquitin carboxyl-terminal hydrolase 4 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DOA4 PE=3
SV=1
Length = 882
Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 15/195 (7%)
Query: 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRK 378
GL+N+GN+C+MN +QCL+ T +L+Q FL + Y IN + LG G LA F L+
Sbjct: 519 VGLENMGNSCYMNCIIQCLLSTHELSQIFLNNSYEKHINLNSKLGSKGVLAKYFARLVHT 578
Query: 379 LWSSG--------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVK 430
++ G + P FK F Q DSQE FLLDGLHEDLN+
Sbjct: 579 MYREGSFKRPLEKNKPIQPIQFKMACGSINSLFKDNTQQDSQEFCQFLLDGLHEDLNQCG 638
Query: 431 QKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKV 484
P + E+ + + E+++ W+ + S+IVD+FQGQY S L C VC
Sbjct: 639 ANPPLKELSEDAEKMREKLSMRIASSIEWERFLTTDFSVIVDLFQGQYASQLKCKVCGCT 698
Query: 485 SITFDPFMYLTLPLP 499
S T+ F L++P+P
Sbjct: 699 STTYQTFSVLSVPVP 713
Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 22/164 (13%)
Query: 765 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNK 824
+ C + F E LG D++W CP CK+ + +TKKL + LP L+ HLKRF + NK
Sbjct: 720 ILDCFNEFTKVEKLGTDELWSCPTCKKKQPSTKKLTITRLPRNLIIHLKRFD---NMMNK 776
Query: 825 LDTFVNFPILNLDLSKYMKSK-DGE----------------SYVYDLFAISNHYGGLGGG 867
+ FV +P L LDL+ Y + DG + Y L A+++H G L GG
Sbjct: 777 NNVFVKYPFL-LDLTPYWANDFDGRLPPGVTDELPTRGQVPPFRYKLNAVASHVGSLYGG 835
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPV-SEGDIKTSAAYVLFYRRV 910
HYTAY W++FDD+ P+ +E + T AYVLFY RV
Sbjct: 836 HYTAYVNKGINRGWHYFDDTSYRPIKNETECITPNAYVLFYHRV 879
>sp|Q9HFS7|UBP4_KLULA Ubiquitin carboxyl-terminal hydrolase 4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=DOA4 PE=3 SV=1
Length = 796
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 22/209 (10%)
Query: 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKL 379
GL NLGN+C++N +QCL+ +L+ FL + Y +N + LG G LA F L++K+
Sbjct: 433 GLVNLGNSCYLNCIIQCLLGCHELSYIFLTNSYRKHVNVNSRLGSKGLLANYFSQLVQKM 492
Query: 380 WSSGR-----------AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNR 428
+ G+ AV P FK F G Q D QE FLLDGLHEDLN+
Sbjct: 493 YQQGKLQAYNNTNMESTAVHPTQFKLACGSINSLFKGKQQQDCQEFCQFLLDGLHEDLNQ 552
Query: 429 VKQKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCS 482
P + E+ + E + W+ + + S+IVD+FQGQY S L C +C+
Sbjct: 553 CGTNPPLKELSPEAEKMRETMPMRIASAIEWERYLTTDFSVIVDLFQGQYASQLRCKICA 612
Query: 483 KVSITFDPFMYLTLPLPSTVTRTMTVTVF 511
S T+ F L++P+P R + T++
Sbjct: 613 HTSTTYQAFSVLSVPVP----RARSCTIY 637
Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 94/178 (52%), Gaps = 27/178 (15%)
Query: 753 FTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHL 812
+V R + +++ C F E L D++WYCP CK+ + +TK++ + LP+ L+ HL
Sbjct: 624 LSVPVPRARSCTIYDCFKEFTKLETLEKDELWYCPYCKQRQPSTKQIIITRLPNNLIIHL 683
Query: 813 KRFSYSRYLKNKLDTFVNFPILNLDLSKY--------MKSKDGES---------YVYDLF 855
KRF + NK + FVN+P LDL+ + M +G S + Y LF
Sbjct: 684 KRFD---NMMNKNNVFVNYPN-ELDLTGFWIDDYNGEMPKDNGVSLPLRGQKPPFNYRLF 739
Query: 856 AISNHYGGLGGGHYTAYAKLIDENR--WYHFDDSHVSPVSEGD-IKTSAAYVLFYRRV 910
A+++H G L GGHYT++ +D+ R W FDD + D T AYVLFYRRV
Sbjct: 740 AVASHSGTLYGGHYTSF---VDKGRVGWCSFDDVSWRKIRRKDEYITPNAYVLFYRRV 794
>sp|Q5UQR3|UBPL1_MIMIV Probable ubiquitin carboxyl-terminal hydrolase R319 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R319 PE=3 SV=1
Length = 468
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 757 KTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFS 816
K E ++++ CL + ++E L D++W C C E QA KK LW P VLV KRF
Sbjct: 308 KNMYEQLNVYDCLREYFSQETLDADNLWNCEGCHEKVQAIKKTKLWTTPYVLVIQFKRFG 367
Query: 817 YSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYV---YDLFAISNHYGGLGGGHYTAYA 873
+R K+ + F+N+P+ LD+S + S+ E V Y L + NH+GGL GHY Y+
Sbjct: 368 MTRIAKD--NRFINYPMDELDVSSVICSQQFEDSVQTKYKLQCVINHHGGLNNGHYFTYS 425
Query: 874 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRR 909
K+ + WY F+D++ V++ I AY+LFY R
Sbjct: 426 KIENTGEWYEFNDTYTGKVTDNHIVNQNAYILFYIR 461
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 98/268 (36%), Gaps = 87/268 (32%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD---------------YSD-------- 354
G+ G+ NLGNTC+MNSALQ L H L Y + + D
Sbjct: 40 GITGIMNLGNTCYMNSALQALSHNYLLINYLFMNKKQIIRTLLTNARKIFKDCDNFKIES 99
Query: 355 -----------EINTEN-----------PLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392
+I +EN + ++ + L +W + V P +F
Sbjct: 100 TISPIPLELRKKIQSENYHLSMLTVEDVNILLNNTITAQIIRLFECMWKNN-CVVVPTSF 158
Query: 393 KGKLARFAPQ-FSGYNQHDSQELLAFLLDGLHEDL----------------------NRV 429
+ + F GY QHD++E + ++ + E+L N V
Sbjct: 159 RKVFGEVRDKFFFGYEQHDAEEAYSCIIQKMQEELAEKRTIRFKTTRHSVGEYIKYMNDV 218
Query: 430 KQK----PYIEMKD---------SGGRPDEEVANECWKNHKARND---SLIVDVFQGQYK 473
K+K P + KD P E + E ++ K + S I ++F G
Sbjct: 219 KEKVSCLPNGKEKDIVMNKFKQIKKQMPRESLTAESFREMKKYYEQGYSYITEIFSGYVH 278
Query: 474 STLVCP--VCSKVSITFDPFMYLTLPLP 499
S++ CP C + FD F +L+L +P
Sbjct: 279 SSICCPNTSCGFTNDRFDAFTHLSLSIP 306
>sp|Q28CN3|UBP33_XENTR Ubiquitin carboxyl-terminal hydrolase 33 OS=Xenopus tropicalis
GN=usp33 PE=2 SV=1
Length = 892
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 762 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYL 821
++L CL AF + L D+M+ C +CK+ R K + P++L HLKRF +
Sbjct: 516 TVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMF 575
Query: 822 KNKLDTFVNFPILNLDLSKYMKSKDGESYV--YDLFAISNHYGGLGGGHYTAYAKLIDEN 879
K+ T V+FP+ LDL ++ +KD S + YDL ++ H+G GHY AY + N
Sbjct: 576 STKIGTHVSFPLEGLDLQPFL-AKDSPSQIVTYDLLSVICHHGTASSGHYIAYCRNNLNN 634
Query: 880 RWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 922
WY FDD V+ VSE ++ + AYVLFYR+ + + E S
Sbjct: 635 LWYEFDDQSVTEVSEATVQNAEAYVLFYRKASEEAQKERRRVS 677
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLR 377
GL GL+N+GNTC+MN+ALQ L + P L YFL + P L ++ L+
Sbjct: 146 GLTGLKNIGNTCYMNAALQALSNCPPLTHYFLDCGGLARTDKKP-----ALCKSYQKLMS 200
Query: 378 KLWSSGRAA-VAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDL 426
+W R V P + P F GY+Q D+QE L L+D LHE+L
Sbjct: 201 DIWHKNRPGFVIPTNLFQGIKSVNPTFRGYSQQDAQEFLRCLMDVLHEEL 250
Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 454 KNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLP 499
K + + S+I D+F G S++ C C +VS+T + F L+LP+P
Sbjct: 423 KRKQKKYHSVIADIFDGTIVSSVQCLTCDRVSVTLETFQDLSLPIP 468
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 34/121 (28%)
Query: 45 LYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGS 104
+ + IS +W+R WE +V SK ++ PGPIDN+ I +
Sbjct: 796 VIYCISMQWFREWEGFV--------------------KSKDSDPPGPIDNTKI-----AA 830
Query: 105 SEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYKGGPALP-RKMI----SEGIVNEKRVE 159
++ + +R+ + GQ + ++ W L Y GGP + R+ + SEG E++++
Sbjct: 831 AKCGHITLRQGADSGQ----ISEETWLFLQSIYGGGPEITLRQNVTLAESEGGHAEEKID 886
Query: 160 V 160
V
Sbjct: 887 V 887
Score = 37.0 bits (84), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 32/168 (19%)
Query: 65 EPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNG-----SSEGDDLEVRRNLEEG 119
EPS+ +N K PGPI N+D + G +S +DL
Sbjct: 684 EPSLLQFYISRQWLNKF--KTFAEPGPISNNDFLCIHGGVPPRKASFIEDL--------- 732
Query: 120 QDYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDNS--QTV 177
V++PQ +W+ L+ Y GGPA+ + E ++ I+ R +T
Sbjct: 733 --VVMLPQNIWDYLYSRYGGGPAVNHLYVCYTCQTE---------MEKIEKRRKMELETF 781
Query: 178 IRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQT 225
IRL+K Q E + I + R W+ F K + + P D T
Sbjct: 782 IRLNK---AFQEEESPAVIYCISMQWFREWEGFVKSKDSDPPGPIDNT 826
>sp|Q6FQF0|UBP4_CANGA Ubiquitin carboxyl-terminal hydrolase 4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DOA4 PE=3 SV=1
Length = 887
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 104/196 (53%), Gaps = 15/196 (7%)
Query: 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRK 378
GL+N+GN+C++N +QC+ T +L + FL G Y+ IN ++ LG G L+ F LL+
Sbjct: 525 VGLENMGNSCYINCIIQCIFATTELIKIFLNGTYAKHINKQSKLGSKGVLSHNFAKLLKD 584
Query: 379 LWSSGRA--------AVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVK 430
++ + AV FK A F +Q D E FLLDGLHEDLN+
Sbjct: 585 MYEENSSKKIGKKHGAVKTLQFKMACASVNSLFKDASQQDCLEFCQFLLDGLHEDLNQCG 644
Query: 431 QKPYI-EMKDSGGRPDEEVANEC-----WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKV 484
P + E+ + E ++ W+ + + S+IVD+FQGQY S L C VC++
Sbjct: 645 ANPPLKELSPEAEKMRENLSLRVASSIEWERYLTTDFSIIVDLFQGQYASQLRCKVCNRT 704
Query: 485 SITFDPFMYLTLPLPS 500
S T+ F L++P+PS
Sbjct: 705 STTYQAFSVLSVPVPS 720
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 85/166 (51%), Gaps = 22/166 (13%)
Query: 765 LFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNK 824
L C F E L D+ W+CP CK+ + +TKKL + LP L+ HLKRF + NK
Sbjct: 726 LLDCFIEFTKTENLEVDEQWFCPSCKKKQPSTKKLTITRLPRNLIIHLKRFD---NMMNK 782
Query: 825 LDTFVNFPILNLDLSKY-MKSKDGE----------------SYVYDLFAISNHYGGLGGG 867
+ FV +P + LDL+ + DG+ + Y L+ + H+G L GG
Sbjct: 783 NNIFVRYPQI-LDLTPFWANDSDGKLPPGITDEIPARGQVPPFNYRLYGAACHFGTLYGG 841
Query: 868 HYTAYAKLIDENRWYHFDDSHVSPVS-EGDIKTSAAYVLFYRRVKS 912
HYT+Y E W +FDD+ PV + + + +AYVLFY R+ S
Sbjct: 842 HYTSYVDKGPEKGWIYFDDTVYRPVRFQNEFISPSAYVLFYHRITS 887
>sp|Q8R5K2|UBP33_MOUSE Ubiquitin carboxyl-terminal hydrolase 33 OS=Mus musculus GN=Usp33
PE=1 SV=2
Length = 909
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 762 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYL 821
++L CL AF + L D+M+ C +CK+ R K + P++L HLKRF +
Sbjct: 533 VVTLQDCLAAFFARDELKGDNMYSCEKCKKLRNGVKFCKVQKFPEILCIHLKRFRHELMF 592
Query: 822 KNKLDTFVNFPILNLDLSKYM-KSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENR 880
K+ T V+FP+ LDL ++ K + YDL ++ H+G GHY AY + N
Sbjct: 593 STKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHGTASSGHYIAYCRNNLNNL 652
Query: 881 WYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 922
WY FDD V+ VSE ++ + AYVLFYR+ + + E S
Sbjct: 653 WYEFDDQSVTEVSESTVQNAEAYVLFYRKSSEEAQKERRRIS 694
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 13/145 (8%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLR 377
GL GL+N+GNTC+MN+ALQ L + P L Q+FL + P + ++ L+
Sbjct: 152 GLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLARTDKKP-----AICKSYLKLMT 206
Query: 378 KLWSSGR-AAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
+LW R +V P + P F GY+Q D+QE L L+D LHE+L ++ +E
Sbjct: 207 ELWHKSRPGSVVPANLFQGIKTVNPTFRGYSQQDAQEFLRCLMDLLHEEL----KEQVME 262
Query: 437 MKDSGGRPDEEVANECWKNHKARND 461
M++ P + E + K+++D
Sbjct: 263 MEE---EPQTLTSEETVEEEKSQSD 284
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 29/98 (29%)
Query: 46 YFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSS 105
++ IS +W+R WE +V G K + PGPIDN+ I GS
Sbjct: 814 FYCISMQWFREWESFVKG--------------------KDGDPPGPIDNTKIAVTKCGSV 853
Query: 106 EGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYKGGPAL 143
L++G D + ++ W L Y GGP +
Sbjct: 854 ---------MLKQGADSGQISEETWNFLQSIYGGGPEV 882
Score = 41.2 bits (95), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 454 KNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLP 499
K HK + S+I D+F G S++ C C +VSIT + F L+LP+P
Sbjct: 434 KQHK-KYRSVISDIFDGTVISSVQCLTCDRVSITLETFQDLSLPIP 478
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 65 EPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVL 124
EPS+ +N K PGPI N+D + G R +D VL
Sbjct: 701 EPSLLQFYISRQWLNKF--KTFAEPGPISNNDFLCIHGGIPP-------RKASYIEDLVL 751
Query: 125 -VPQQVWEKLFCWYKGGPAL 143
+PQ +W+ L+ Y GGPA+
Sbjct: 752 MLPQNIWDNLYSRYGGGPAV 771
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,577,734
Number of Sequences: 539616
Number of extensions: 16558035
Number of successful extensions: 40447
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 38996
Number of HSP's gapped (non-prelim): 785
length of query: 927
length of database: 191,569,459
effective HSP length: 127
effective length of query: 800
effective length of database: 123,038,227
effective search space: 98430581600
effective search space used: 98430581600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)