Query 002408
Match_columns 927
No_of_seqs 385 out of 2108
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:20:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5560 UBP12 Ubiquitin C-term 100.0 3E-116 7E-121 959.6 42.0 775 20-911 24-823 (823)
2 KOG1870 Ubiquitin C-terminal h 100.0 1.3E-91 2.7E-96 853.5 39.4 825 37-911 5-842 (842)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 2.2E-64 4.7E-69 555.5 22.5 304 316-910 105-410 (545)
4 COG5533 UBP5 Ubiquitin C-termi 100.0 5.4E-64 1.2E-68 508.6 19.9 335 315-910 67-414 (415)
5 cd02663 Peptidase_C19G A subfa 100.0 5.6E-62 1.2E-66 537.1 27.4 287 321-908 1-300 (300)
6 cd02668 Peptidase_C19L A subfa 100.0 6.1E-60 1.3E-64 526.7 30.3 295 321-908 1-324 (324)
7 cd02671 Peptidase_C19O A subfa 100.0 1E-59 2.2E-64 521.8 29.6 300 312-908 17-332 (332)
8 cd02660 Peptidase_C19D A subfa 100.0 3.1E-59 6.8E-64 523.0 30.6 317 320-908 1-328 (328)
9 cd02667 Peptidase_C19K A subfa 100.0 2.1E-59 4.6E-64 510.9 25.1 252 321-908 1-279 (279)
10 cd02669 Peptidase_C19M A subfa 100.0 6.7E-59 1.5E-63 535.5 26.6 305 314-908 114-440 (440)
11 cd02664 Peptidase_C19H A subfa 100.0 1.3E-58 2.9E-63 515.7 26.1 277 321-908 1-327 (327)
12 KOG1868 Ubiquitin C-terminal h 100.0 3.1E-59 6.6E-64 539.8 16.7 344 314-913 296-649 (653)
13 cd02658 Peptidase_C19B A subfa 100.0 5.4E-57 1.2E-61 500.9 30.0 293 321-908 1-311 (311)
14 cd02657 Peptidase_C19A A subfa 100.0 4.7E-57 1E-61 500.1 28.2 288 321-908 1-305 (305)
15 cd02661 Peptidase_C19E A subfa 100.0 2.8E-56 6.1E-61 493.7 28.2 301 319-907 1-303 (304)
16 cd02659 peptidase_C19C A subfa 100.0 5.7E-56 1.2E-60 497.9 28.5 298 318-911 1-333 (334)
17 cd02662 Peptidase_C19F A subfa 100.0 1.5E-51 3.3E-56 438.7 23.0 123 763-908 96-240 (240)
18 KOG1873 Ubiquitin-specific pro 100.0 1.9E-50 4.1E-55 451.3 8.3 150 760-910 675-877 (877)
19 cd02674 Peptidase_C19R A subfa 100.0 3.4E-48 7.3E-53 411.5 20.7 146 763-908 84-230 (230)
20 cd02673 Peptidase_C19Q A subfa 100.0 6.5E-46 1.4E-50 393.3 20.2 130 764-908 111-245 (245)
21 KOG1867 Ubiquitin-specific pro 100.0 8.4E-46 1.8E-50 422.4 18.1 325 314-913 156-487 (492)
22 cd02665 Peptidase_C19I A subfa 100.0 2.9E-45 6.4E-50 380.4 17.8 127 764-908 94-228 (228)
23 PF00443 UCH: Ubiquitin carbox 100.0 3.8E-44 8.1E-49 387.6 22.5 258 319-907 1-269 (269)
24 KOG1866 Ubiquitin carboxyl-ter 100.0 4.2E-46 9.2E-51 414.7 5.2 308 313-915 89-439 (944)
25 KOG0944 Ubiquitin-specific pro 100.0 4.3E-44 9.3E-49 397.2 19.8 300 314-910 302-762 (763)
26 cd02666 Peptidase_C19J A subfa 100.0 4.2E-44 9.1E-49 396.1 17.8 158 319-500 1-177 (343)
27 COG5077 Ubiquitin carboxyl-ter 100.0 4.1E-42 8.9E-47 382.8 7.2 299 314-913 188-514 (1089)
28 cd02672 Peptidase_C19P A subfa 100.0 7.2E-41 1.6E-45 359.5 14.6 136 763-908 117-268 (268)
29 cd02257 Peptidase_C19 Peptidas 100.0 1E-39 2.3E-44 348.5 22.2 142 763-908 99-255 (255)
30 KOG4598 Putative ubiquitin-spe 100.0 1.2E-40 2.6E-45 366.6 1.6 152 764-916 215-447 (1203)
31 COG5207 UBP14 Isopeptidase T [ 100.0 4.1E-38 8.9E-43 337.7 16.8 296 319-909 303-748 (749)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 3E-36 6.6E-41 376.8 12.8 305 314-916 164-491 (1093)
33 cd02670 Peptidase_C19N A subfa 100.0 8.9E-35 1.9E-39 304.6 16.1 123 762-908 79-241 (241)
34 KOG1864 Ubiquitin-specific pro 100.0 1.1E-33 2.5E-38 327.5 15.4 332 315-911 228-573 (587)
35 PF13423 UCH_1: Ubiquitin carb 100.0 1.6E-30 3.5E-35 286.0 24.3 284 320-889 1-295 (295)
36 KOG2026 Spindle pole body prot 100.0 1.3E-28 2.9E-33 258.5 14.6 305 312-910 127-441 (442)
37 KOG1871 Ubiquitin-specific pro 100.0 6.1E-29 1.3E-33 262.6 12.1 143 764-911 266-420 (420)
38 KOG1872 Ubiquitin-specific pro 99.9 4.8E-27 1E-31 255.0 5.6 151 317-495 103-261 (473)
39 PF06337 DUSP: DUSP domain; I 99.8 2.6E-21 5.6E-26 176.9 7.9 96 43-149 1-99 (99)
40 smart00695 DUSP Domain in ubiq 99.8 1.2E-19 2.6E-24 161.0 9.8 83 41-149 2-85 (86)
41 KOG1275 PAB-dependent poly(A) 99.6 3.2E-14 6.9E-19 164.2 15.7 123 784-907 702-860 (1118)
42 PF14836 Ubiquitin_3: Ubiquiti 98.6 8.8E-08 1.9E-12 83.0 7.4 78 165-244 2-82 (88)
43 PF14533 USP7_C2: Ubiquitin-sp 97.4 0.0027 5.8E-08 66.3 13.4 142 491-645 3-156 (213)
44 PF15499 Peptidase_C98: Ubiqui 97.2 0.003 6.5E-08 65.4 11.0 82 784-888 171-252 (275)
45 KOG1864 Ubiquitin-specific pro 96.8 0.001 2.3E-08 78.8 4.7 105 322-427 34-153 (587)
46 PF14560 Ubiquitin_2: Ubiquiti 92.7 0.6 1.3E-05 41.3 8.1 66 175-240 15-81 (87)
47 cd01796 DDI1_N DNA damage indu 92.5 0.48 1E-05 40.2 6.9 62 172-239 8-69 (71)
48 PTZ00044 ubiquitin; Provisiona 91.3 1.1 2.3E-05 38.4 7.9 64 172-242 9-72 (76)
49 cd01789 Alp11_N Ubiquitin-like 90.3 1.3 2.8E-05 39.0 7.5 65 176-240 15-79 (84)
50 cd01807 GDX_N ubiquitin-like d 90.2 1.1 2.5E-05 38.1 7.0 61 172-239 9-69 (74)
51 cd01763 Sumo Small ubiquitin-r 89.8 2.6 5.6E-05 37.3 9.1 63 172-241 20-82 (87)
52 cd01806 Nedd8 Nebb8-like ubiq 89.8 2 4.2E-05 36.6 8.2 63 173-242 10-72 (76)
53 cd01812 BAG1_N Ubiquitin-like 88.4 1.7 3.8E-05 36.4 6.8 62 172-240 8-69 (71)
54 cd01803 Ubiquitin Ubiquitin. U 88.3 2.5 5.4E-05 35.9 7.8 63 173-242 10-72 (76)
55 cd01799 Hoil1_N Ubiquitin-like 87.8 1.8 3.8E-05 37.2 6.4 61 172-239 11-72 (75)
56 cd01798 parkin_N amino-termina 87.5 2.3 5.1E-05 35.7 7.0 60 172-238 7-66 (70)
57 cd01808 hPLIC_N Ubiquitin-like 86.8 2.8 6E-05 35.4 7.1 58 175-239 11-68 (71)
58 cd01810 ISG15_repeat2 ISG15 ub 86.7 4 8.6E-05 34.8 8.0 64 172-242 7-70 (74)
59 cd01794 DC_UbP_C dendritic cel 86.1 3 6.5E-05 35.2 6.8 59 172-237 7-65 (70)
60 cd01802 AN1_N ubiquitin-like d 85.4 5.8 0.00013 36.3 8.9 64 172-242 36-99 (103)
61 cd01793 Fubi Fubi ubiquitin-li 84.6 5.4 0.00012 33.9 7.8 60 174-240 9-68 (74)
62 PF00240 ubiquitin: Ubiquitin 84.2 3.2 7E-05 34.5 6.2 59 175-240 7-65 (69)
63 cd01805 RAD23_N Ubiquitin-like 83.1 6.6 0.00014 33.5 7.9 63 173-242 10-74 (77)
64 PF05408 Peptidase_C28: Foot-a 82.3 0.71 1.5E-05 45.8 1.6 24 317-340 31-54 (193)
65 cd01809 Scythe_N Ubiquitin-lik 82.2 5.8 0.00013 33.2 7.1 60 172-238 9-68 (72)
66 PF11543 UN_NPL4: Nuclear pore 82.1 3.9 8.5E-05 35.6 6.0 68 171-240 11-78 (80)
67 cd01804 midnolin_N Ubiquitin-l 81.7 8 0.00017 33.4 7.8 59 173-239 11-69 (78)
68 cd01797 NIRF_N amino-terminal 81.5 7.2 0.00016 33.7 7.4 60 177-243 15-75 (78)
69 cd01791 Ubl5 UBL5 ubiquitin-li 81.5 9.5 0.00021 32.5 8.0 60 173-239 11-70 (73)
70 PF11976 Rad60-SLD: Ubiquitin- 81.4 5.5 0.00012 33.5 6.6 59 172-237 9-68 (72)
71 cd01792 ISG15_repeat1 ISG15 ub 80.0 11 0.00024 32.6 8.2 65 173-242 12-76 (80)
72 cd01800 SF3a120_C Ubiquitin-li 78.1 9.1 0.0002 32.7 7.0 62 175-243 9-70 (76)
73 PF05408 Peptidase_C28: Foot-a 77.8 2.2 4.7E-05 42.5 3.3 48 859-913 129-178 (193)
74 KOG1870 Ubiquitin C-terminal h 76.3 1.3 2.8E-05 55.9 1.7 132 762-908 481-612 (842)
75 smart00213 UBQ Ubiquitin homol 74.8 9.3 0.0002 30.8 6.0 54 174-234 10-63 (64)
76 cd01795 USP48_C USP ubiquitin- 74.3 11 0.00025 33.8 6.4 61 175-241 16-76 (107)
77 cd01813 UBP_N UBP ubiquitin pr 73.7 14 0.0003 31.5 6.9 64 172-239 8-71 (74)
78 cd01769 UBL Ubiquitin-like dom 72.6 14 0.0003 30.3 6.7 58 175-239 9-66 (69)
79 COG3478 Predicted nucleic-acid 64.7 5.4 0.00012 32.5 2.2 37 781-817 2-40 (68)
80 PF11470 TUG-UBL1: GLUT4 regul 63.5 11 0.00023 31.4 3.9 37 171-207 4-40 (65)
81 PF00789 UBX: UBX domain; Int 63.0 36 0.00079 29.3 7.5 67 171-240 14-81 (82)
82 smart00166 UBX Domain present 61.3 64 0.0014 27.8 8.7 68 170-240 11-79 (80)
83 cd01760 RBD Ubiquitin-like dom 60.7 41 0.00088 28.7 7.0 41 170-210 6-46 (72)
84 cd01817 RGS12_RBD Ubiquitin do 60.4 44 0.00095 28.5 7.0 65 170-242 6-70 (73)
85 TIGR00601 rad23 UV excision re 58.3 25 0.00055 40.0 7.0 64 172-242 9-75 (378)
86 PF14560 Ubiquitin_2: Ubiquiti 56.7 1.1E+02 0.0023 26.9 9.4 64 520-583 14-80 (87)
87 PF08715 Viral_protease: Papai 54.8 26 0.00056 38.9 6.1 80 316-424 99-179 (320)
88 PF02196 RBD: Raf-like Ras-bin 54.5 56 0.0012 27.6 6.9 40 171-210 8-47 (71)
89 cd01768 RA RA (Ras-associating 54.4 80 0.0017 27.5 8.3 51 521-571 14-66 (87)
90 PLN02560 enoyl-CoA reductase 52.0 59 0.0013 36.0 8.5 61 177-239 17-80 (308)
91 cd01767 UBX UBX (ubiquitin reg 50.5 1.2E+02 0.0025 25.9 8.4 66 170-240 9-75 (77)
92 cd06406 PB1_P67 A PB1 domain i 47.9 70 0.0015 27.8 6.4 34 175-208 12-45 (80)
93 smart00314 RA Ras association 46.8 1.3E+02 0.0029 26.3 8.5 51 521-571 17-68 (90)
94 PF00788 RA: Ras association ( 46.1 71 0.0015 27.9 6.7 47 164-210 4-55 (93)
95 PF01473 CW_binding_1: Putativ 45.6 14 0.0003 22.5 1.4 15 871-887 2-16 (19)
96 cd01768 RA RA (Ras-associating 44.2 71 0.0015 27.8 6.3 40 173-212 12-53 (87)
97 KOG0010 Ubiquitin-like protein 43.5 65 0.0014 37.4 7.2 68 165-239 16-83 (493)
98 PF00770 Peptidase_C5: Adenovi 42.9 35 0.00075 33.9 4.2 32 855-886 21-53 (183)
99 KOG1769 Ubiquitin-like protein 42.8 1.6E+02 0.0034 26.7 7.9 68 163-237 19-87 (99)
100 PF00788 RA: Ras association ( 41.9 1.9E+02 0.0041 25.1 8.8 65 507-571 4-70 (93)
101 cd01791 Ubl5 UBL5 ubiquitin-li 40.2 1.4E+02 0.003 25.4 7.2 58 521-584 13-71 (73)
102 cd00196 UBQ Ubiquitin-like pro 39.8 98 0.0021 23.5 6.1 37 172-208 6-42 (69)
103 cd01774 Faf1_like2_UBX Faf1 ik 37.9 2.1E+02 0.0045 25.1 8.1 69 171-240 12-83 (85)
104 cd01779 Myosin_IXb_RA ubitquit 36.8 2.2E+02 0.0048 25.5 7.7 61 508-568 13-73 (105)
105 cd01773 Faf1_like1_UBX Faf1 ik 35.8 3E+02 0.0065 24.1 8.5 70 170-242 12-81 (82)
106 PF12436 USP7_ICP0_bdg: ICP0-b 35.1 75 0.0016 34.1 5.9 39 174-212 190-228 (249)
107 cd01804 midnolin_N Ubiquitin-l 34.9 1.4E+02 0.003 25.6 6.4 56 522-583 14-69 (78)
108 cd01771 Faf1_UBX Faf1 UBX doma 32.3 3.4E+02 0.0073 23.5 8.4 69 170-241 11-79 (80)
109 KOG1887 Ubiquitin carboxyl-ter 31.6 21 0.00046 43.6 1.1 104 800-911 677-791 (806)
110 KOG1871 Ubiquitin-specific pro 29.1 22 0.00049 39.7 0.7 112 316-428 175-316 (420)
111 KOG1867 Ubiquitin-specific pro 28.8 21 0.00045 42.3 0.3 107 316-423 74-181 (492)
112 cd01801 Tsc13_N Ubiquitin-like 27.0 1.8E+02 0.0039 24.8 5.8 54 181-239 20-74 (77)
113 cd01789 Alp11_N Ubiquitin-like 27.0 3E+02 0.0064 24.0 7.3 31 522-552 15-45 (84)
114 cd01788 ElonginB Ubiquitin-lik 26.9 2.9E+02 0.0063 25.7 7.2 55 171-232 9-63 (119)
115 KOG3556 Familial cylindromatos 26.3 15 0.00032 42.2 -1.3 106 799-908 516-716 (724)
116 smart00455 RBD Raf-like Ras-bi 26.0 1.1E+02 0.0025 25.7 4.3 40 170-209 6-45 (70)
117 cd01815 BMSC_UbP_N Ubiquitin-l 24.3 1.8E+02 0.0039 25.0 5.1 50 182-238 19-71 (75)
118 PF09855 DUF2082: Nucleic-acid 24.3 54 0.0012 27.2 1.9 34 784-817 1-36 (64)
119 cd01816 Raf_RBD Ubiquitin doma 22.9 4.9E+02 0.011 22.3 7.6 42 171-212 7-48 (74)
120 KOG4495 RNA polymerase II tran 22.9 1.2E+02 0.0027 27.0 3.9 57 172-233 10-66 (110)
121 cd01783 DAGK_delta_RA Ubiquiti 22.8 1.8E+02 0.0039 26.3 5.0 50 157-210 4-56 (97)
122 cd01792 ISG15_repeat1 ISG15 ub 22.4 4E+02 0.0086 22.8 7.2 37 522-559 15-51 (80)
123 PF14533 USP7_C2: Ubiquitin-sp 20.8 93 0.002 32.5 3.4 38 175-212 35-75 (213)
124 PF08817 YukD: WXG100 protein 20.5 1.9E+02 0.004 24.9 4.7 71 166-239 4-78 (79)
125 cd01813 UBP_N UBP ubiquitin pr 20.2 2.4E+02 0.0052 23.9 5.2 34 521-554 11-44 (74)
126 cd01782 AF6_RA_repeat1 Ubiquit 20.1 7E+02 0.015 23.1 8.4 72 496-567 11-87 (112)
No 1
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-116 Score=959.62 Aligned_cols=775 Identities=33% Similarity=0.558 Sum_probs=575.8
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhcc
Q 002408 20 CTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99 (927)
Q Consensus 20 ~~~~~e~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~ 99 (927)
+.-.+|++.|.+ +. ...-+.++..|+++..|++...++...+ ++.||||+-..|++
T Consensus 24 Lp~~~q~~li~e--~~-~e~~k~~~~a~i~~y~wyeg~fd~~~~d---------------------g~~pgPi~q~~i~d 79 (823)
T COG5560 24 LPLMMQEELIDE--KP-AESSKQCEYAVIFAYAWYEGMFDRASCD---------------------GGSPGPIVQGPIVD 79 (823)
T ss_pred cchHHHHHHHhc--Cc-hhhhccCceEEEEehHHhhhhccccccc---------------------CCCCCCCCcccccc
Confidence 345667777766 21 1223458899999999999988876443 36899999999997
Q ss_pred CCCCCCCCCcchhccccCCCCcEEEeCHHHHHHHHHHhC-CCCCcceEEeecccccceeeeeccceEEEEeccCC-----
Q 002408 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN----- 173 (927)
Q Consensus 100 ~~~~~~~~~~~~Lk~~l~e~~Df~~Vp~~~W~~l~~wYG-~~~~i~R~vi~~~~~~~~~vElyP~~l~i~~~~~~----- 173 (927)
- ....|+..+.++.||-+|+..+|++|.+||| .|+.++|.++.-+......+|+||+.|++..+...
T Consensus 80 ~-------e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~ 152 (823)
T COG5560 80 F-------EPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLI 152 (823)
T ss_pred c-------ChhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhh
Confidence 2 2457899999999999999999999999999 58889999977654333379999999998765431
Q ss_pred ----CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhh--ccCCc----eEEEEEEe
Q 002408 174 ----SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAM--LQMDQ----DILLEVQV 243 (927)
Q Consensus 174 ----~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~--l~~~q----~ilve~~~ 243 (927)
....+.+|+..++.++.+++..+|-++.+++|||++...+.+..+... .+..+.. ...++ .+++|.-.
T Consensus 153 n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~--s~f~~~~~~a~~~~~l~~~t~~el~~ 230 (823)
T COG5560 153 NLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLD--SFFRRYRVLASDGRVLHPLTRLELFE 230 (823)
T ss_pred hcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCH--HHHhhcchhccchhhhcccHHHHhcc
Confidence 345678999999999999999999999999999999765543111110 0000000 00000 01111111
Q ss_pred cCccccCCCCCCCccccccCCCCcccccCCCCccCCCccCcccCCCCCCCCCCCCCCCCCCcCcccccccCCCCCccccc
Q 002408 244 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQ 323 (927)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~ 323 (927)
+. +...+ ...+.|+.- ..-+ .. .+..+ ++- ..-|.+||.
T Consensus 231 d~--------------------s~lll--~kit~np~w-----------lvds-i~-~~~n~---sin---ke~GtcGL~ 269 (823)
T COG5560 231 DR--------------------SVLLL--SKITRNPDW-----------LVDS-IV-DDHNR---SIN---KEAGTCGLR 269 (823)
T ss_pred ch--------------------hhhHH--hhhccCCcc-----------ceee-ec-chhhh---hHH---hhcccccee
Confidence 10 00000 000111100 0000 00 01111 111 113999999
Q ss_pred cCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHHhhCCC
Q 002408 324 NLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQ 402 (927)
Q Consensus 324 NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~ 402 (927)
|+||||||||+||||.|++.||+||++. |.+++|..||+|+.|.++.+|+.|+++++.+...+++|..|+..||.++..
T Consensus 270 NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~ 349 (823)
T COG5560 270 NLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEE 349 (823)
T ss_pred cCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHH
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCCh---HHHHHHHHHhhcccCCCccccceeEEEEEEEEcC
Q 002408 403 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPD---EEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 479 (927)
Q Consensus 403 f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~---~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~ 479 (927)
|.||.|||+|||+.+|||+|||+|||+.+|||.+.++-....+ ...|+++|..|+.||+|||.++|+|.++|+++|+
T Consensus 350 fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp 429 (823)
T COG5560 350 FSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCP 429 (823)
T ss_pred hcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeecc
Confidence 9999999999999999999999999999999998887543333 4579999999999999999999999999999999
Q ss_pred CCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCC
Q 002408 480 VCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH 559 (927)
Q Consensus 480 ~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 559 (927)
.|+.+|++||||++|+||||....|..+|++||.+|...| ..+.+.+.+++.++++.+..+.|+..-..+.+.++|.+
T Consensus 430 ~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g 507 (823)
T COG5560 430 GCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYG 507 (823)
T ss_pred CcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEec
Confidence 9999999999999999999999999999999999999888 56778888899999888888777666667888999999
Q ss_pred eeEEeecCCccc-ccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEE-EecCCCCCHHHH
Q 002408 560 QIFRFFENPAEL-ISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT-YLEEEHLSGADI 637 (927)
Q Consensus 560 ~~~~~~~d~~~~-~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~-~~~~~~~~~~~i 637 (927)
..++.+...... +..|.+.|.+|.|+ ..++...++++|-+.+.. .....+||.|++. .+.....-...+
T Consensus 508 ~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kL 578 (823)
T COG5560 508 GNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKL 578 (823)
T ss_pred cchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHH
Confidence 999998876664 56799999999999 555668899999866543 3556799999742 222222212222
Q ss_pred HHHHHHhccccc-cccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCC
Q 002408 638 DIAVSKLLSPLR-RTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSI 716 (927)
Q Consensus 638 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (927)
...+.+++.... .....+..+. +--.. ..++......+++.. -..+.-+.....+.
T Consensus 579 vkE~~ell~~v~~k~tdvd~~~~---q~~l~-------r~es~p~~wl~l~te-------------id~kree~veeE~~ 635 (823)
T COG5560 579 VKEFEELLVLVEMKKTDVDLVSE---QVRLL-------REESSPSSWLKLETE-------------IDTKREEQVEEEGQ 635 (823)
T ss_pred HHHHHHHHHHHhhcchhhhhhhh---hccch-------hcccCcchhhhhhhh-------------ccchhhhhhhhhhc
Confidence 111111111000 0000000000 00000 000000000000000 00000000000011
Q ss_pred CCCCCceEEEEeecCccccc-CC-cccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccce
Q 002408 717 LKPGKHIKVLLDWTDDVHEL-YD-PSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (927)
Q Consensus 717 ~~~~~~~~i~~~w~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (927)
...+..+.|.+.|.+..... |+ ...+- .-+.+ .....+||+|||++|.++|+|+..|.||||.||++++
T Consensus 636 ~n~nd~vvi~cew~ek~y~~lFsy~~lw~----~~ei~-----~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrq 706 (823)
T COG5560 636 MNFNDAVVISCEWEEKRYLSLFSYDPLWT----IREIG-----AAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ 706 (823)
T ss_pred cCCCcceEEeeeccccchhhhhcCCccch----hHHhh-----hccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhh
Confidence 12244567889998876554 42 11000 00011 1257899999999999999999999999999999999
Q ss_pred EEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEEE
Q 002408 795 ATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAK 874 (927)
Q Consensus 795 a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k 874 (927)
|+|+|+||++|+|||||||||++.+.+++||++.|.|||.+|||+.++....+...+|+||||.||+|+++|||||||+|
T Consensus 707 asKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyar 786 (823)
T COG5560 707 ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR 786 (823)
T ss_pred hhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeee
Confidence 99999999999999999999999999999999999999999999999987766679999999999999999999999999
Q ss_pred eCCCCCEEEECCceeeecCcCcccCCceEEEEEEEec
Q 002408 875 LIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 911 (927)
Q Consensus 875 ~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~ 911 (927)
|+.+++||+|||++|++|.+++.++++||||||+|+.
T Consensus 787 n~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence 9999999999999999999999999999999999974
No 2
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-91 Score=853.53 Aligned_cols=825 Identities=38% Similarity=0.584 Sum_probs=636.7
Q ss_pred ccCCCCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCCCCCCCCCcchhcccc
Q 002408 37 DLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNL 116 (927)
Q Consensus 37 ~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~Lk~~l 116 (927)
...+..|+.+++|...|+..|++|++.... ... ........+++++||...+. ...+ ...+|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~---------~~~~~~~~k~~~~~n~~~~~--~~~~---~~~~~~~~ 69 (842)
T KOG1870|consen 5 RRTCKSGKSHGLILWRCLEQWQSYVGLESY-HEI---------STIHSQAPKHGLTDNLTFLR--CDAC---DKTLRVSL 69 (842)
T ss_pred ccccccccccchhhhhhhhhccccccceee-ecc---------ccccccccccccccCccchh--Hhhh---hhHHHhhh
Confidence 356789999999999999999999987221 000 01123347899999999997 2212 22899999
Q ss_pred CCCCcEEEeCHHHHHHHHHHh-CCCCCcceEEeecccccc-eeeeeccceEEEEeccCCCceEEEeCccccHHHHHHHHH
Q 002408 117 EEGQDYVLVPQQVWEKLFCWY-KGGPALPRKMISEGIVNE-KRVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVC 194 (927)
Q Consensus 117 ~e~~Df~~Vp~~~W~~l~~wY-G~~~~i~R~vi~~~~~~~-~~vElyP~~l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~ 194 (927)
+|+.||.++|+++|+.+..|| .+++++.|.|+..+.... ..+|+||..+.+..........+..+...|+.++.+..+
T Consensus 70 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 149 (842)
T KOG1870|consen 70 LEGLDYTISPRSVQKLLVEWFKSGGAAILRAVFDEGEIERDDFVELYPRGLTLLKNSGNSRTSLALQADSTCPPLTSYFL 149 (842)
T ss_pred ccccccccCCHHHHhhccccccCCCccchhhhhcccccccCCcccccchhhhhccCCCCccceeccccccCccHHHHHHH
Confidence 999999999999999999999 578899999999876333 379999999998887766666688899999999999999
Q ss_pred HHhCCCCcceEEEEecCCcccccCCCCcc-CChhhhhccCCceEEEEEEecCccccCCCCC-CCccccccCCCCcccccC
Q 002408 195 KLRGIEQEKARIWDYFNKQRSTSPLDVSD-QTLDDAMLQMDQDILLEVQVDNGISMDSTGN-DLALVPIEPSRSSLTIAG 272 (927)
Q Consensus 195 ~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~-~tl~d~~l~~~q~ilve~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~ 272 (927)
..+.++.+..|+|.+...... .++.... .++....+..++.+++|+...+......+.. ....++.+
T Consensus 150 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 218 (842)
T KOG1870|consen 150 ESGGLPRTKFAIWASYNEKYL-SLWYKSDPGKLVPTVLFQGRKMVLEVFRKFASQPSDMTLRCWMDWLSE---------- 218 (842)
T ss_pred HhcCCCcccchhhhhhhHhhh-cccccccccccccccccccceEEeeeccccccchhhhchhhccccccc----------
Confidence 999999999999998876644 4444333 7788888888999999977433211100000 00001100
Q ss_pred CCCccCCCccCcccCCCCCCCCCCCCCCCCCCcCcccccccCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-
Q 002408 273 GPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD- 351 (927)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~- 351 (927)
.....+ .+...+ .+...........+|.+||.|+||||||||.+|||.+.+++++||+..
T Consensus 219 ~~~~~~----------------~~~~s~---~~~~~~~~~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~ 279 (842)
T KOG1870|consen 219 RDPDAS----------------GTKETR---VDFPSEEISSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDL 279 (842)
T ss_pred cccccC----------------CCcccc---cccccccccCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHh
Confidence 000000 000000 000111123456789999999999999999999999999999999998
Q ss_pred CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhcc
Q 002408 352 YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ 431 (927)
Q Consensus 352 ~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~ 431 (927)
+..+++..+++++.+.++..+..++.++|......++|..++..++.+.++|.|+.|||+|||+.||||.||+++++...
T Consensus 280 ~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~~~~v~~~~~~~~~~~~a~~~~g~~q~d~~E~lafllDglhedl~~~~~ 359 (842)
T KOG1870|consen 280 YDREINESNPLGSAGEVASSFADLIKQLWSGNKSAVAPTSFRTSLASFASEFSGYGQQDSQELLAFLLDGLHEDLNRVSS 359 (842)
T ss_pred hHhhhcccCCCcccceechhhhhHHHHhccCCccccCchhhhhhhhhccccccCcccccchhhhhHHhhhhhHHhhccCC
Confidence 55569999999999999999999999999988879999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEE
Q 002408 432 KPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVF 511 (927)
Q Consensus 432 ~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~ 511 (927)
+||++.++.+++++.+.+.+.|..+..++.|+|.++|.|++++++.|+.|++++++||+|.+|+||+|....+...++++
T Consensus 360 kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~ 439 (842)
T KOG1870|consen 360 KPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVP 439 (842)
T ss_pred cCcccccccccchhhhhhHHHHHhhhhhccceeeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCC
Q 002408 512 YANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQG 591 (927)
Q Consensus 512 ~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~ 591 (927)
+.++...|..+.+.+.+++++.++.+++.+.+++. ...+..++++.+.+.+++.........|...+.++.|+++....
T Consensus 440 ~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 518 (842)
T KOG1870|consen 440 HGDGFRKPGALGVSVAKNGRIRDLLEYLSRTVGLL-SWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKV 518 (842)
T ss_pred cCCCCCChhheeeeccccchHHHHHHHHHHHhccc-hhhcccceeccchhhhhhccCccccccccCCcceEEeecccccc
Confidence 99999999999999999999999999999999988 89999999999999999997766778899999999999986333
Q ss_pred Cce-EEEE--eeecccccccccccCCCceeecccEEEEecC-CCCCHHHHHHHHHHhccccccccccccccCCCCCCCCc
Q 002408 592 GKI-KLEI--VNRWQEKSASDYLKGSERKLFGAPLVTYLEE-EHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLP 667 (927)
Q Consensus 592 ~~~-~~~~--~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (927)
... +..+ .++.................||.|++..+.. ...+..++...+..+.+++...+.... ..+..+..+.
T Consensus 519 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v-~~~~~~~~~~ 597 (842)
T KOG1870|consen 519 QGSIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNV-GYGVDDQSLK 597 (842)
T ss_pred cccceEEEEEeeccccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCcccc-ccCCCccccc
Confidence 322 2122 2221111111223445567999999999997 777889999988888888776531110 0000000000
Q ss_pred ccccccccCCCCC-cccccccccccccceeeEEEecCCCCccCCCc---cCCCCCCCCceEEEEeecCcccccCCccccc
Q 002408 668 EVIDELSNSHNES-VETAELEDLCSRELSFQLSLTDERISSCKPIQ---KDSILKPGKHIKVLLDWTDDVHELYDPSYIK 743 (927)
Q Consensus 668 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~ 743 (927)
... +........ .....++..+....++................ ..+.........++++|.+.....+......
T Consensus 598 ~~~-e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~ 676 (842)
T KOG1870|consen 598 EVS-EQSAESSSSVSRDPSEDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVS 676 (842)
T ss_pred ccc-cccccccccccCCChhHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhcccccccccc
Confidence 000 000000000 00000011000000000000000000000000 0011111122238999999887776555544
Q ss_pred ccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeeccccc
Q 002408 744 DLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823 (927)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~ 823 (927)
+.+++........+.....++|++||+.|+++|.|+.+++|||++|++|++|+|+++||+||+|||||||||+|.++++.
T Consensus 677 ~~~~~~~~~~~~~~~~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~ 756 (842)
T KOG1870|consen 677 QPPEVEPRGASRSKGSPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSS 756 (842)
T ss_pred ccccccccccccccCCCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhh
Confidence 55566555555555566799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceE
Q 002408 824 KLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAY 903 (927)
Q Consensus 824 Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AY 903 (927)
|+++.|+||+..||+++|+..++. .+|+||||+||+|++++||||||+|+..+++||.|||++|++++++++++.+||
T Consensus 757 k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY 834 (842)
T KOG1870|consen 757 KVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAY 834 (842)
T ss_pred hhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccce
Confidence 999999999999999999998864 899999999999999999999999998899999999999999999999999999
Q ss_pred EEEEEEec
Q 002408 904 VLFYRRVK 911 (927)
Q Consensus 904 lLFY~R~~ 911 (927)
+|||+|++
T Consensus 835 ~Lfy~r~~ 842 (842)
T KOG1870|consen 835 VLFYRRLD 842 (842)
T ss_pred EEEEEecC
Confidence 99999985
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-64 Score=555.47 Aligned_cols=304 Identities=34% Similarity=0.581 Sum_probs=272.4
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (927)
..-.+||.|+|||||+|||||||.++|||++||++. +..... ....+++++|+..+.....++..+++|..|+.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~-----~~~~C~lc~~q~hi~~A~~~~g~pisP~~i~s 179 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCH-----RAKFCMLCTFQAHITRALHNPGHPISPSQILS 179 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhcc-----ccCeeeehHHHHHHHHHhcCCCCccChHHHHH
Confidence 445799999999999999999999999999999987 332222 23567899999999888887778999999999
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEE
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (927)
.|..+...|..+.|.||||||++++|.|+.-+-....+ ........++|+++|+|.+++
T Consensus 180 ~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~---------------------~~~~sq~ttlv~~iFGG~LrS 238 (545)
T KOG1865|consen 180 NLRNISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQ---------------------VDPRSQDTTLVHQIFGGYLRS 238 (545)
T ss_pred hhhhhcccccCCchhhHHHHHHHHHHHHHHhhcCCCcc---------------------CCcccccceehhhhhccchhh
Confidence 99999999999999999999999999999776421111 012334568999999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEE
Q 002408 475 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (927)
Q Consensus 475 ~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 554 (927)
+++|..|+++|.+||+.++|+|.|-.
T Consensus 239 ~vkC~~C~~vS~tyE~~~dltvei~d------------------------------------------------------ 264 (545)
T KOG1865|consen 239 QIKCLHCKGVSDTYEPYLDLTLEIQD------------------------------------------------------ 264 (545)
T ss_pred ceecccCCCcccccccccceEEEecc------------------------------------------------------
Confidence 99999999999999999999998720
Q ss_pred EEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCH
Q 002408 555 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 634 (927)
Q Consensus 555 e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 634 (927)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccC
Q 002408 635 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714 (927)
Q Consensus 635 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (927)
T Consensus 265 -------------------------------------------------------------------------------- 264 (545)
T KOG1865|consen 265 -------------------------------------------------------------------------------- 264 (545)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccce
Q 002408 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (927)
Q Consensus 715 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (927)
.-+|.+||+.|+++|.|+++|+|.|++||+++.
T Consensus 265 -----------------------------------------------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~ 297 (545)
T KOG1865|consen 265 -----------------------------------------------ASSLQQALEQFTKPEKLDGENAYHCGRCKQKVP 297 (545)
T ss_pred -----------------------------------------------chhHHHHHHHhhhHHhhCCccccccchhhhhCc
Confidence 018999999999999999999999999999999
Q ss_pred EEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-cCCCCeEEEEE
Q 002408 795 ATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAYA 873 (927)
Q Consensus 795 a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~l~~GHYtAy~ 873 (927)
|.|++.|.++|.||.||||||+. ++..||+..|.|| +.|||.|||..+++.+.+|.||||++|.| ....|||++|+
T Consensus 298 A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fP-E~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYv 374 (545)
T KOG1865|consen 298 ASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFP-ETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYV 374 (545)
T ss_pred ccceeeeecCCceEEEeeehhcc--CcccccccccCCc-ccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEE
Confidence 99999999999999999999998 5569999999999 79999999998888999999999999999 89999999999
Q ss_pred EeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEe
Q 002408 874 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 910 (927)
Q Consensus 874 k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~ 910 (927)
|. ..|.||.+||+.|+.++.+.|++..||||||.|.
T Consensus 375 ks-~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 375 KS-QNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred Ec-CCCceEEccCceeeeccccceecccceEEEEEee
Confidence 97 7789999999999999999999999999999997
No 4
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-64 Score=508.62 Aligned_cols=335 Identities=36% Similarity=0.564 Sum_probs=275.4
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhH-HHHHHHHHHHHHhcCCCCccChHHH
Q 002408 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGE-LALAFGDLLRKLWSSGRAAVAPRAF 392 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~-l~~~l~~L~~~l~~~~~~~i~p~~~ 392 (927)
....+.||+|+|||||||++||||+.+..|...|+.. |.+.+|.++|.+..|. .+..|..|...+...+...|+|+.|
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~Hg~~sis~~nF 146 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGCHGPKSISPRNF 146 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhccccCCCcccchHHH
Confidence 3456899999999999999999999999999977766 8999999999999985 5566677777777777889999999
Q ss_pred HHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhcc-CCcccccCCCCC-----ChHHHHHHHHHhhcccCCCcccc
Q 002408 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQ-KPYIEMKDSGGR-----PDEEVANECWKNHKARNDSLIVD 466 (927)
Q Consensus 393 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~-~~~~~~~~~~~~-----~~~~~a~~~w~~~~~~~~sii~~ 466 (927)
+..++..++.|++..|||||||+.++||.||||++.-.. +|..+.+|...+ +.....--.|+.+...+.|+|.+
T Consensus 147 ~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~sn~S~v~~ 226 (415)
T COG5533 147 IDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLRSNKSLVAK 226 (415)
T ss_pred HHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhccchHHHHH
Confidence 999999999999999999999999999999999987543 333333332211 11112335799999999999999
Q ss_pred ceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCC
Q 002408 467 VFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 546 (927)
Q Consensus 467 lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~ 546 (927)
.|.|+++++++|..|++.|+++.+|..|++|++..
T Consensus 227 ~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v--------------------------------------------- 261 (415)
T COG5533 227 TFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEV--------------------------------------------- 261 (415)
T ss_pred HHhhhhhhhhhhhhcCCceeEEeccceeeeccchh---------------------------------------------
Confidence 99999999999999999999999999999998621
Q ss_pred CCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEE
Q 002408 547 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 626 (927)
Q Consensus 547 ~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 626 (927)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCC
Q 002408 627 LEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERIS 706 (927)
Q Consensus 627 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (927)
T Consensus 262 -------------------------------------------------------------------------------- 261 (415)
T COG5533 262 -------------------------------------------------------------------------------- 261 (415)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCC
Q 002408 707 SCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786 (927)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C 786 (927)
..+.|.|||++|+++|.|+++|+|.|
T Consensus 262 ------------------------------------------------------~~~~l~eC~~~f~~~e~L~g~d~W~C 287 (415)
T COG5533 262 ------------------------------------------------------VQLGLQECIDRFYEEEKLEGKDAWRC 287 (415)
T ss_pred ------------------------------------------------------eeecHHHHHHHhhhHHhhcCcccccC
Confidence 01358999999999999999999999
Q ss_pred ccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceee----eccCCCcccccccccCCCCceEEEEEEEEEeec
Q 002408 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFV----NFPILNLDLSKYMKSKDGESYVYDLFAISNHYG 862 (927)
Q Consensus 787 ~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V----~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G 862 (927)
|+|++++.++|++.|.++|++|||||+||.-.-..+.||+++- +||.+-++--.|-....-.+..|.|+||+||+|
T Consensus 288 pkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G 367 (415)
T COG5533 288 PKCGRKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG 367 (415)
T ss_pred chhcccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecc
Confidence 9999999999999999999999999999985544455555532 334322211111111112467899999999999
Q ss_pred cCCCCeEEEEEEeCCCCCEEEECCceeeecCc-CcccCCceEEEEEEEe
Q 002408 863 GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSE-GDIKTSAAYVLFYRRV 910 (927)
Q Consensus 863 ~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~-~~V~s~~AYlLFY~R~ 910 (927)
++.||||+++++ .+|.|+.|||+.|++++- -+....+||||||+|.
T Consensus 368 ~L~gGHY~s~v~--~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 368 TLNGGHYFSEVK--RSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred eecCceeEEeee--ecCceEEechhheeeccceecccCCcceEEEEEec
Confidence 999999999999 579999999999999983 3455679999999995
No 5
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.6e-62 Score=537.14 Aligned_cols=287 Identities=31% Similarity=0.562 Sum_probs=251.8
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHHHHHHHHh
Q 002408 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRAFKGKLAR 398 (927)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~~~~~l~~ 398 (927)
||.|+||||||||+||||+| .+++.+|+.||.+||.+. ..+++|..|+.+++.
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~-------------------------~~l~~~L~~lf~~l~~~~~~~~~isP~~f~~~l~~ 55 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF-------------------------ENLLTCLKDLFESISEQKKRTGVISPKKFITRLKR 55 (300)
T ss_pred CccCCCcceehhHHHHHhhh-------------------------HHHHHHHHHHHHHHHhCCCCCeeECHHHHHHHHHh
Confidence 99999999999999999988 358889999999999864 457999999999999
Q ss_pred hCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEEc
Q 002408 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (927)
Q Consensus 399 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 478 (927)
..+.|.+++||||||||.+|||.||++++...++...+. ...+........++|.++|+|++.++++|
T Consensus 56 ~~~~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~------------~~~~~~~~~~~~~~i~~~F~G~~~~~~~C 123 (300)
T cd02663 56 ENELFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANR------------KLNNNNNAEPQPTWVHEIFQGILTNETRC 123 (300)
T ss_pred hcCCCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccc------------cccccccCCcCCCChhhhCceEEEeeEEe
Confidence 999999999999999999999999999987654332110 01122233456788999999999999999
Q ss_pred CCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeC
Q 002408 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 558 (927)
Q Consensus 479 ~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 558 (927)
..|++++.++|+|++|+|+||.
T Consensus 124 ~~C~~~s~~~e~f~~Lsl~i~~---------------------------------------------------------- 145 (300)
T cd02663 124 LTCETVSSRDETFLDLSIDVEQ---------------------------------------------------------- 145 (300)
T ss_pred CCCCCCccccceeEEeccCCCC----------------------------------------------------------
Confidence 9999999999999999999862
Q ss_pred CeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHHH
Q 002408 559 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (927)
Q Consensus 559 ~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~ 638 (927)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCCC
Q 002408 639 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (927)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (927)
T Consensus 146 -------------------------------------------------------------------------------- 145 (300)
T cd02663 146 -------------------------------------------------------------------------------- 145 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEE
Q 002408 719 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 798 (927)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~ 798 (927)
..+|++||+.|+++|.|.++|.|+|++|++++.|+|+
T Consensus 146 -------------------------------------------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~ 182 (300)
T cd02663 146 -------------------------------------------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKR 182 (300)
T ss_pred -------------------------------------------cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEE
Confidence 1279999999999999999999999999999999999
Q ss_pred EEeeeCCCeEEEEEeceeeecc--cccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-cCCCCeEEEEEEe
Q 002408 799 LDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAYAKL 875 (927)
Q Consensus 799 ~~I~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~l~~GHYtAy~k~ 875 (927)
+.|+++|+|||||||||.++.. ...|+++.|.||+ .|||.++..........|+|+|||+|.| ++++||||||+|+
T Consensus 183 ~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~ 261 (300)
T cd02663 183 MKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPL-ELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS 261 (300)
T ss_pred EEeccCCceeEEEEEeEEeecccCCceecCceEecCc-EEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC
Confidence 9999999999999999999854 3689999999996 7999987654444568999999999999 5999999999996
Q ss_pred CCCCCEEEECCceeeecCcCccc--------CCceEEEEEE
Q 002408 876 IDENRWYHFDDSHVSPVSEGDIK--------TSAAYVLFYR 908 (927)
Q Consensus 876 ~~~~~Wy~fnDs~V~~v~~~~V~--------s~~AYlLFY~ 908 (927)
+++||+|||+.|+++++++|. +.+||||||+
T Consensus 262 --~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 262 --HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred --CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 899999999999999988885 6889999996
No 6
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.1e-60 Score=526.65 Aligned_cols=295 Identities=31% Similarity=0.529 Sum_probs=255.2
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCCccc-ccCC----CCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 002408 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEI-NTEN----PLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (927)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~-~~~~----~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 395 (927)
||.|+||||||||+||||+|+|+|++++++...... ...+ ......+++.+|+.|+.+|+.+...+++|..|..+
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f~~~ 80 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGFVKA 80 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHHHHH
Confidence 999999999999999999999999999987522111 1000 00123579999999999999988899999999998
Q ss_pred HHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEE
Q 002408 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (927)
Q Consensus 396 l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 475 (927)
++ |..++||||||||.+|||.||++++.... ....++|.++|.|++.++
T Consensus 81 l~-----~~~~~QqDa~EFl~~lLd~L~~~l~~~~~--------------------------~~~~~~i~~~F~G~~~~~ 129 (324)
T cd02668 81 LG-----LDTGQQQDAQEFSKLFLSLLEAKLSKSKN--------------------------PDLKNIVQDLFRGEYSYV 129 (324)
T ss_pred hC-----CCCccccCHHHHHHHHHHHHHHHHhhccC--------------------------CcccchhhhhcceEEEEE
Confidence 84 67889999999999999999999864210 112467999999999999
Q ss_pred EEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEE
Q 002408 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 555 (927)
Q Consensus 476 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 555 (927)
++|..|++.+.+.|+|+.|+|+||.
T Consensus 130 ~~C~~C~~~s~~~e~f~~l~l~i~~------------------------------------------------------- 154 (324)
T cd02668 130 TQCSKCGRESSLPSKFYELELQLKG------------------------------------------------------- 154 (324)
T ss_pred EEeCCCCCccccccccEEEEEEecc-------------------------------------------------------
Confidence 9999999999999999999999851
Q ss_pred EeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHH
Q 002408 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 635 (927)
Q Consensus 556 ~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 635 (927)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCC
Q 002408 636 DIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDS 715 (927)
Q Consensus 636 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (927)
T Consensus 155 -------------------------------------------------------------------------------- 154 (324)
T cd02668 155 -------------------------------------------------------------------------------- 154 (324)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceE
Q 002408 716 ILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795 (927)
Q Consensus 716 ~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a 795 (927)
..+|++||+.|+++|.|++++.|+|++|++++.|
T Consensus 155 ----------------------------------------------~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a 188 (324)
T cd02668 155 ----------------------------------------------HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDA 188 (324)
T ss_pred ----------------------------------------------cCCHHHHHHHhhCceecCCCccccCCCCCceeee
Confidence 1279999999999999999999999999999999
Q ss_pred EEEEEeeeCCCeEEEEEeceeeec--ccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-cCCCCeEEEE
Q 002408 796 TKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYTAY 872 (927)
Q Consensus 796 ~K~~~I~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~l~~GHYtAy 872 (927)
+|++.|.++|+||+||||||.++. +.+.|+++.|.|| +.|||++|+.........|+|+|||+|.| ++++|||+||
T Consensus 189 ~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~ 267 (324)
T cd02668 189 TRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAH 267 (324)
T ss_pred EEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEE
Confidence 999999999999999999999974 4578999999999 69999999976655678999999999999 5899999999
Q ss_pred EEeCCCCCEEEECCceeeecCcCcc---------------------cCCceEEEEEE
Q 002408 873 AKLIDENRWYHFDDSHVSPVSEGDI---------------------KTSAAYVLFYR 908 (927)
Q Consensus 873 ~k~~~~~~Wy~fnDs~V~~v~~~~V---------------------~s~~AYlLFY~ 908 (927)
+|+..+++||.|||+.|++++.+.| .+..|||||||
T Consensus 268 ~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 268 IKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9986679999999999999975544 46789999996
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-59 Score=521.82 Aligned_cols=300 Identities=30% Similarity=0.496 Sum_probs=244.5
Q ss_pred ccCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHH
Q 002408 312 KKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA 391 (927)
Q Consensus 312 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~ 391 (927)
++....|++||.|+||||||||+||||+|+|+|++++.... +.......+ ..+..++..++........|..
T Consensus 17 ~~~~~~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~-------~~~~~~~~~-q~~~~~l~~~~~~~~~~~~P~~ 88 (332)
T cd02671 17 KRENLLPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLV-------SLISSVEQL-QSSFLLNPEKYNDELANQAPRR 88 (332)
T ss_pred ccccCCCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhh-------cccCcHHHH-HHHHHHHHHHHhhcccccCHHH
Confidence 45567899999999999999999999999999999986531 011111122 2223345556665556678999
Q ss_pred HHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEE
Q 002408 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (927)
Q Consensus 392 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 471 (927)
|+.+++..+|.|.++.||||||||.+|||.|++ +|.++|+|.
T Consensus 89 ~~~~l~~~~~~f~~~~QQDA~EFl~~LLd~L~~--------------------------------------~i~~~F~g~ 130 (332)
T cd02671 89 LLNALREVNPMYEGYLQHDAQEVLQCILGNIQE--------------------------------------LVEKDFQGQ 130 (332)
T ss_pred HHHHHHHhccccCCccccCHHHHHHHHHHHHHH--------------------------------------HHHhhhceE
Confidence 999999999999999999999999999999983 267899999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCce
Q 002408 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (927)
Q Consensus 472 ~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l 551 (927)
+.++++|..|++.+.++|+|++|+||||........
T Consensus 131 ~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~-------------------------------------------- 166 (332)
T cd02671 131 LVLRTRCLECETFTERREDFQDISVPVQESELSKSE-------------------------------------------- 166 (332)
T ss_pred EEEEEEeCCCCCeeceecccEEEEEEeCCCcccccc--------------------------------------------
Confidence 999999999999999999999999999854210000
Q ss_pred EEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCC
Q 002408 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631 (927)
Q Consensus 552 ~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~ 631 (927)
... . +.
T Consensus 167 ----------------~~~---------~----------------------------------------------~~--- 172 (332)
T cd02671 167 ----------------ESS---------E----------------------------------------------IS--- 172 (332)
T ss_pred ----------------ccc---------c----------------------------------------------cc---
Confidence 000 0 00
Q ss_pred CCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCC
Q 002408 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 711 (927)
Q Consensus 632 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (927)
T Consensus 173 -------------------------------------------------------------------------------- 172 (332)
T cd02671 173 -------------------------------------------------------------------------------- 172 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcc
Q 002408 712 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 791 (927)
Q Consensus 712 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~ 791 (927)
........+|++||+.|+++|.|.++|.|+|++|++
T Consensus 173 --------------------------------------------~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~ 208 (332)
T cd02671 173 --------------------------------------------PDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHH 208 (332)
T ss_pred --------------------------------------------cccccccCCHHHHHHHhCCcceecCCCCeeCCCCCC
Confidence 000012359999999999999999999999999999
Q ss_pred cceEEEEEEeeeCCCeEEEEEeceeeec------ccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-cC
Q 002408 792 HRQATKKLDLWMLPDVLVFHLKRFSYSR------YLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 864 (927)
Q Consensus 792 ~~~a~K~~~I~~lP~iLiIhLKRF~~~~------~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~l 864 (927)
.+.|+|++.|+++|+||+||||||.++. +...|+++.|.||+ .|||.+|.... ....|+|+|||+|.| ++
T Consensus 209 ~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~-~L~~~~~~~~~--~~~~Y~L~~VI~H~G~~~ 285 (332)
T cd02671 209 YTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPL-KLSLEEWSTKP--KNDVYRLFAVVMHSGATI 285 (332)
T ss_pred ceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcc-ccccccccCCC--CCCeEEEEEEEEEcCCCC
Confidence 9999999999999999999999999864 24689999999997 79999886554 457999999999999 68
Q ss_pred CCCeEEEEEEeCCCCCEEEECCceeeecCcCccc---------CCceEEEEEE
Q 002408 865 GGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK---------TSAAYVLFYR 908 (927)
Q Consensus 865 ~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~---------s~~AYlLFY~ 908 (927)
++||||||+| ||+|||+.|++++++++. +.+||||||+
T Consensus 286 ~~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 286 SSGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CCCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 9999999999 999999999999866553 4689999995
No 8
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.1e-59 Score=522.97 Aligned_cols=317 Identities=36% Similarity=0.653 Sum_probs=265.5
Q ss_pred cccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHHHHHHHHh
Q 002408 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 398 (927)
Q Consensus 320 ~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 398 (927)
.||.|+||||||||+||||+|+|+|+++|+........ .......+++++|+.|+..|+ .+....+.|..|+.+++.
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~l~~~~~ 78 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTC--LSCSPNSCLSCAMDEIFQEFYYSGDRSPYGPINLLYLSWK 78 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCcccccc--ccCCccccHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Confidence 59999999999999999999999999999885211100 011224579999999999995 445678999999999999
Q ss_pred hCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEEc
Q 002408 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (927)
Q Consensus 399 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 478 (927)
..+.|.++.||||||||.+|||.||+++....... .......++|.++|+|.+.++++|
T Consensus 79 ~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~---------------------~~~~~~~~~i~~~F~g~~~~~~~C 137 (328)
T cd02660 79 HSRNLAGYSQQDAHEFFQFLLDQLHTHYGGDKNEA---------------------NDESHCNCIIHQTFSGSLQSSVTC 137 (328)
T ss_pred hchhhcccccccHHHHHHHHHHHHHHHhhcccccc---------------------cccccCCceeEEecccEEEeeeEc
Confidence 99999999999999999999999999987643221 001234688999999999999999
Q ss_pred CCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeC
Q 002408 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 558 (927)
Q Consensus 479 ~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 558 (927)
..|++.+.+.|+|+.|+|+||.......
T Consensus 138 ~~C~~~s~~~e~f~~lsl~i~~~~~~~~---------------------------------------------------- 165 (328)
T cd02660 138 QRCGGVSTTVDPFLDLSLDIPNKSTPSW---------------------------------------------------- 165 (328)
T ss_pred CCCCCccceecccceeeeeccccccccc----------------------------------------------------
Confidence 9999999999999999999985421000
Q ss_pred CeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHHH
Q 002408 559 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (927)
Q Consensus 559 ~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~ 638 (927)
.. .
T Consensus 166 ---------~~----------------------------------------------------------~---------- 168 (328)
T cd02660 166 ---------AL----------------------------------------------------------G---------- 168 (328)
T ss_pred ---------cc----------------------------------------------------------c----------
Confidence 00 0
Q ss_pred HHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCCC
Q 002408 639 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (927)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (927)
T Consensus 169 -------------------------------------------------------------------------------- 168 (328)
T cd02660 169 -------------------------------------------------------------------------------- 168 (328)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEE
Q 002408 719 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 798 (927)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~ 798 (927)
........+|++||+.|+++|.+++.+ |+|++|++++.|.|+
T Consensus 169 -------------------------------------~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~ 210 (328)
T cd02660 169 -------------------------------------ESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQ 210 (328)
T ss_pred -------------------------------------ccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEE
Confidence 000023469999999999999998877 999999999999999
Q ss_pred EEeeeCCCeEEEEEeceeeec-ccccccceeeeccCCCccccccccc---------CCCCceEEEEEEEEEeeccCCCCe
Q 002408 799 LDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKYMKS---------KDGESYVYDLFAISNHYGGLGGGH 868 (927)
Q Consensus 799 ~~I~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~~~~---------~~~~~~~YdL~AVi~H~G~l~~GH 868 (927)
+.|.++|++|+||||||.++. +...|+++.|.||. .|||++|+.. .......|+|+|||+|.|+.++||
T Consensus 211 ~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GH 289 (328)
T cd02660 211 LSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPL-ELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGH 289 (328)
T ss_pred EEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCC-EechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCc
Confidence 999999999999999999986 56789999999995 7999999985 223567999999999999999999
Q ss_pred EEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEE
Q 002408 869 YTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908 (927)
Q Consensus 869 YtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~ 908 (927)
||||+|. .+++||.|||+.|+++++++|...+||||||.
T Consensus 290 Y~~~~~~-~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 290 YTAYCRQ-GDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred EEEEEEC-CCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 9999996 34999999999999999999999999999994
No 9
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.1e-59 Score=510.95 Aligned_cols=252 Identities=41% Similarity=0.752 Sum_probs=229.4
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHHhhC
Q 002408 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (927)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 400 (927)
||.|+||||||||+||||+|+|+|+++|++ +|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~-------------------------------------~P~~~~~~l~~~~ 43 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------TPKELFSQVCRKA 43 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH-------------------------------------CHHHHHHHHHHhh
Confidence 999999999999999999999999999964 6888999999889
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEEcCC
Q 002408 401 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPV 480 (927)
Q Consensus 401 ~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~~ 480 (927)
+.|.+++||||||||.+|||.|+ ++|.++|.|++.++++|..
T Consensus 44 ~~f~~~~QqDA~Efl~~lld~l~--------------------------------------~~i~~~F~G~~~~~i~C~~ 85 (279)
T cd02667 44 PQFKGYQQQDSHELLRYLLDGLR--------------------------------------TFIDSIFGGELTSTIMCES 85 (279)
T ss_pred HhhcCCchhhHHHHHHHHHHHHH--------------------------------------HhhhhhcceEEEEEEEcCC
Confidence 99999999999999999999998 1378899999999999999
Q ss_pred CCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCe
Q 002408 481 CSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQ 560 (927)
Q Consensus 481 C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~ 560 (927)
|++.+.+.|+|+.|+||++...
T Consensus 86 C~~~s~~~E~f~~L~Lp~~~~~---------------------------------------------------------- 107 (279)
T cd02667 86 CGTVSLVYEPFLDLSLPRSDEI---------------------------------------------------------- 107 (279)
T ss_pred CCCEeCccccceEEecCCCccc----------------------------------------------------------
Confidence 9999999999999998864210
Q ss_pred eEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHHHHH
Q 002408 561 IFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIA 640 (927)
Q Consensus 561 ~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~~~ 640 (927)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCCCCC
Q 002408 641 VSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPG 720 (927)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (927)
T Consensus 108 -------------------------------------------------------------------------------- 107 (279)
T cd02667 108 -------------------------------------------------------------------------------- 107 (279)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEE
Q 002408 721 KHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLD 800 (927)
Q Consensus 721 ~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~ 800 (927)
....+|++||+.|+++|.|+++|.|.|++|++ |+|+..
T Consensus 108 ---------------------------------------~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~ 145 (279)
T cd02667 108 ---------------------------------------KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYL 145 (279)
T ss_pred ---------------------------------------CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeE
Confidence 12358999999999999999999999999988 999999
Q ss_pred eeeCCCeEEEEEeceeeecc-cccccceeeeccCCCcccccccccC-----CCCceEEEEEEEEEeeccCCCCeEEEEEE
Q 002408 801 LWMLPDVLVFHLKRFSYSRY-LKNKLDTFVNFPILNLDLSKYMKSK-----DGESYVYDLFAISNHYGGLGGGHYTAYAK 874 (927)
Q Consensus 801 I~~lP~iLiIhLKRF~~~~~-~~~Ki~~~V~FPl~~LDls~~~~~~-----~~~~~~YdL~AVi~H~G~l~~GHYtAy~k 874 (927)
|.++|+||+||||||.++.. ...|+++.|+|| +.|||++|+..+ ......|+|+|||+|.|+..+|||+||+|
T Consensus 146 i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~ 224 (279)
T cd02667 146 ISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVK 224 (279)
T ss_pred hhhCCCeEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEE
Confidence 99999999999999999854 678999999999 589999999862 23467999999999999889999999999
Q ss_pred eCC---------------------CCCEEEECCceeeecCcCcccCCceEEEEEE
Q 002408 875 LID---------------------ENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908 (927)
Q Consensus 875 ~~~---------------------~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~ 908 (927)
... +++||.|||+.|++++.++|.+.+|||||||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 225 VRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred cCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 743 7899999999999999999999999999996
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-59 Score=535.52 Aligned_cols=305 Identities=30% Similarity=0.445 Sum_probs=254.4
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccChHH
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAPRA 391 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p~~ 391 (927)
...+|++||.|+||||||||+||||+|+|+||++|++..... +. .....+++.+|+.++++||+.. +.+++|..
T Consensus 114 ~~~~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~-~~---~~~~~~l~~~l~~l~~kl~~~~~~~~~isP~~ 189 (440)
T cd02669 114 PYLPGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYE-NI---KDRKSELVKRLSELIRKIWNPRNFKGHVSPHE 189 (440)
T ss_pred CccCCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccc-cc---cCCCcHHHHHHHHHHHHHhccccCCCccCHHH
Confidence 346799999999999999999999999999999999752111 00 1234579999999999999865 57899999
Q ss_pred HHHHHHhhC-CCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeE
Q 002408 392 FKGKLARFA-PQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 470 (927)
Q Consensus 392 ~~~~l~~~~-~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G 470 (927)
|+.+++... +.|.+++||||||||.+|||.||++++... ..+.++|.++|+|
T Consensus 190 fl~~l~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------------------~~~~~ii~~~F~G 242 (440)
T cd02669 190 LLQAVSKVSKKKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------------------KPNSSIIHDCFQG 242 (440)
T ss_pred HHHHHHhhcccccCCcccCCHHHHHHHHHHHHHHHhccCC---------------------------CCCCCcceeccCc
Confidence 999998765 579999999999999999999999986421 2346899999999
Q ss_pred EEEEEEEcCCCC---------------CeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHH
Q 002408 471 QYKSTLVCPVCS---------------KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL 535 (927)
Q Consensus 471 ~~~s~i~C~~C~---------------~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l 535 (927)
+++++++|..|. ..+.+.+||++|+|+||.....
T Consensus 243 ~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~------------------------------- 291 (440)
T cd02669 243 KVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLF------------------------------- 291 (440)
T ss_pred eEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccc-------------------------------
Confidence 999999987654 3567899999999999854200
Q ss_pred HHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCC
Q 002408 536 ILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSE 615 (927)
Q Consensus 536 ~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (927)
.|..
T Consensus 292 ------------------------------~~~~---------------------------------------------- 295 (440)
T cd02669 292 ------------------------------KDGN---------------------------------------------- 295 (440)
T ss_pred ------------------------------cccc----------------------------------------------
Confidence 0000
Q ss_pred ceeecccEEEEecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccce
Q 002408 616 RKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELS 695 (927)
Q Consensus 616 ~~~fg~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (927)
T Consensus 296 -------------------------------------------------------------------------------- 295 (440)
T cd02669 296 -------------------------------------------------------------------------------- 295 (440)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEEecCCCCccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCC
Q 002408 696 FQLSLTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTE 775 (927)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~ 775 (927)
....-+.++|++||+.
T Consensus 296 ------------------------------------------------------------~~~~l~~~~l~e~L~k---- 311 (440)
T cd02669 296 ------------------------------------------------------------EENIIPQVPLKQLLKK---- 311 (440)
T ss_pred ------------------------------------------------------------cccccCcccHHHHHHh----
Confidence 0000123589999976
Q ss_pred CccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCC---CCceEE
Q 002408 776 EPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD---GESYVY 852 (927)
Q Consensus 776 E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~---~~~~~Y 852 (927)
|.|++|...+.|+|++.|+++|+|||||||||.++...+.|+.+.|+||++.|||++|+..+. ..+.+|
T Consensus 312 --------y~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y 383 (440)
T cd02669 312 --------YDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKY 383 (440)
T ss_pred --------cCCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceE
Confidence 457788888999999999999999999999999987778999999999986799999996432 356899
Q ss_pred EEEEEEEeeccC-CCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEE
Q 002408 853 DLFAISNHYGGL-GGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908 (927)
Q Consensus 853 dL~AVi~H~G~l-~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~ 908 (927)
+|+|||+|.|++ ++|||+||+|+..+|+||.|||+.|+++++++|..++||||||+
T Consensus 384 ~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 384 NLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 999999999987 99999999998778999999999999999999999999999996
No 11
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-58 Score=515.67 Aligned_cols=277 Identities=34% Similarity=0.551 Sum_probs=240.4
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHH-HHHHHHhh
Q 002408 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA-FKGKLARF 399 (927)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~-~~~~l~~~ 399 (927)
||.|+||||||||+||||+++|+||+++++.-.... .....+..+|+.|+..|..+...++.|.. |+.++.
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~~------~~~~~~~~~L~~lf~~l~~~~~~~~~~~~~~l~~~~-- 72 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPRL------GDSQSVMKKLQLLQAHLMHTQRRAEAPPDYFLEASR-- 72 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCcccc------CCcchHHHHHHHHHHHHhhcCCcccCCHHHHHHHhc--
Confidence 899999999999999999999999999987522111 11235788899999888776667777776 666543
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEEcC
Q 002408 400 APQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 479 (927)
Q Consensus 400 ~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~ 479 (927)
.+.|..+.|||||||+.+||+.|+ ++|.++|.|++.++++|.
T Consensus 73 ~~~f~~~~QqDa~EFl~~lLd~l~--------------------------------------~~i~~~F~G~~~~~i~C~ 114 (327)
T cd02664 73 PPWFTPGSQQDCSEYLRYLLDRLH--------------------------------------TLIEKMFGGKLSTTIRCL 114 (327)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHH--------------------------------------HHHHhhCcEEeEeEEEcC
Confidence 578999999999999999999998 137889999999999999
Q ss_pred CCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCC
Q 002408 480 VCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH 559 (927)
Q Consensus 480 ~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 559 (927)
.|++++.+.|+|..|+|+||
T Consensus 115 ~C~~~s~~~e~f~~l~L~i~------------------------------------------------------------ 134 (327)
T cd02664 115 NCNSTSARTERFRDLDLSFP------------------------------------------------------------ 134 (327)
T ss_pred CCCCEecccccceeeecCCC------------------------------------------------------------
Confidence 99999999999999988874
Q ss_pred eeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHHHH
Q 002408 560 QIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDI 639 (927)
Q Consensus 560 ~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~~ 639 (927)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCCCC
Q 002408 640 AVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKP 719 (927)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (927)
T Consensus 135 -------------------------------------------------------------------------------- 134 (327)
T cd02664 135 -------------------------------------------------------------------------------- 134 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEE
Q 002408 720 GKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKL 799 (927)
Q Consensus 720 ~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~ 799 (927)
+|++||+.|+++|.|+++|.|+|++|++++.|+|++
T Consensus 135 --------------------------------------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~ 170 (327)
T cd02664 135 --------------------------------------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEM 170 (327)
T ss_pred --------------------------------------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEE
Confidence 467899999999999999999999999999999999
Q ss_pred EeeeCCCeEEEEEeceeeec--ccccccceeeeccCCCcccccccccC-------------------CCCceEEEEEEEE
Q 002408 800 DLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSK-------------------DGESYVYDLFAIS 858 (927)
Q Consensus 800 ~I~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~-------------------~~~~~~YdL~AVi 858 (927)
.|.++|+|||||||||.|+. +.+.|+++.|.||. .|||..|+... ......|+|+|||
T Consensus 171 ~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~-~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi 249 (327)
T cd02664 171 KVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINE-VLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVV 249 (327)
T ss_pred EcccCChhhEEEeeeeEEccccCcceecCceEecCC-EEecCccccccccccccccccccccccccccCCCceEEEEEEE
Confidence 99999999999999999974 45689999999995 89999997421 1245789999999
Q ss_pred Eeec-cCCCCeEEEEEEeCC--------------------CCCEEEECCceeeecCcCcccC-------CceEEEEEE
Q 002408 859 NHYG-GLGGGHYTAYAKLID--------------------ENRWYHFDDSHVSPVSEGDIKT-------SAAYVLFYR 908 (927)
Q Consensus 859 ~H~G-~l~~GHYtAy~k~~~--------------------~~~Wy~fnDs~V~~v~~~~V~s-------~~AYlLFY~ 908 (927)
+|.| ++++||||||+|... +++||.|||+.|+++++++|.+ .+||||||+
T Consensus 250 ~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 250 VHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999 689999999999744 4799999999999999998875 899999996
No 12
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-59 Score=539.83 Aligned_cols=344 Identities=43% Similarity=0.711 Sum_probs=297.9
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcC-CCCccChHH
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS-GRAAVAPRA 391 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~-~~~~i~p~~ 391 (927)
....|++||.|+|||||||++||||+.++.||..+++. |.+.++.++..+ ...+..++..++..+|.. +..++.|+.
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~s~~P~~ 374 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFG-AEELESACAKLLQKLWHGHGQFSVLPRR 374 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCccc-chhHHHHHHHhhhhhccCCCceecCcHH
Confidence 45678999999999999999999999999999888877 877777444333 456777888888877765 678899999
Q ss_pred HHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcc-ccc-----CCCCCChHHHHHHHHHhhcccCCCccc
Q 002408 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYI-EMK-----DSGGRPDEEVANECWKNHKARNDSLIV 465 (927)
Q Consensus 392 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~-~~~-----~~~~~~~~~~a~~~w~~~~~~~~sii~ 465 (927)
|+..+++..+.|+++.|||||||+.++++.||++++.....+.. ... .....++...+...|.++....++.|.
T Consensus 375 f~~~~~~y~~~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~~d~~i~ 454 (653)
T KOG1868|consen 375 FIRVLKRYSPNFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEEEDSKIG 454 (653)
T ss_pred HHHHHhhcccccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccccchHHH
Confidence 99999999999999999999999999999999999986542111 111 111223444556778888888888899
Q ss_pred cceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCC
Q 002408 466 DVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL 545 (927)
Q Consensus 466 ~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~ 545 (927)
++|.||+++.++|..|++.|.+|++|++|+||||....
T Consensus 455 ~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~------------------------------------------ 492 (653)
T KOG1868|consen 455 DLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGF------------------------------------------ 492 (653)
T ss_pred HHHHHHHHhheehhhcCCcceeeecceeeEEecccccc------------------------------------------
Confidence 99999999999999999999999999999999984310
Q ss_pred CCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEE
Q 002408 546 KIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT 625 (927)
Q Consensus 546 ~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~ 625 (927)
T Consensus 493 -------------------------------------------------------------------------------- 492 (653)
T KOG1868|consen 493 -------------------------------------------------------------------------------- 492 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCC
Q 002408 626 YLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERI 705 (927)
Q Consensus 626 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (927)
T Consensus 493 -------------------------------------------------------------------------------- 492 (653)
T KOG1868|consen 493 -------------------------------------------------------------------------------- 492 (653)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCC
Q 002408 706 SSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWY 785 (927)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~ 785 (927)
....++|++|++.|++.|.|+++++|.
T Consensus 493 -----------------------------------------------------~~~~~~L~~C~~~ft~~ekle~~~~w~ 519 (653)
T KOG1868|consen 493 -----------------------------------------------------AGGKVSLEDCLSLFTKEEKLEGDEAWL 519 (653)
T ss_pred -----------------------------------------------------cccccchHhhhccccchhhcccccccC
Confidence 011368999999999999999999999
Q ss_pred CccCcccceEE--EEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeecc
Q 002408 786 CPQCKEHRQAT--KKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 863 (927)
Q Consensus 786 C~~Ck~~~~a~--K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~ 863 (927)
||+|++.+.++ |++.||++|+|||||||||.+++....|....|+||+..+|+.+++..+......|+||||+||+|+
T Consensus 520 Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt 599 (653)
T KOG1868|consen 520 CPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT 599 (653)
T ss_pred CccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc
Confidence 99999999986 9999999999999999999999888899999999999999999988888777778999999999999
Q ss_pred CCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCC
Q 002408 864 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913 (927)
Q Consensus 864 l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~ 913 (927)
++||||||||+....++|+.|||+.|+.++..+|.+++||||||+|....
T Consensus 600 l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 600 LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred ccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcc
Confidence 99999999998777899999999999999999999999999999998754
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.4e-57 Score=500.92 Aligned_cols=293 Identities=29% Similarity=0.484 Sum_probs=246.0
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC--------------CCc
Q 002408 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------------RAA 386 (927)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------------~~~ 386 (927)
||.|+||||||||+||||+|+|+||++|++..... . .......++++++|++|+..|++.. ..+
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~-~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKF-P-SDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVG 78 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhcccc-C-CCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccc
Confidence 99999999999999999999999999998731111 1 1122235679999999999998743 346
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCcccc
Q 002408 387 VAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVD 466 (927)
Q Consensus 387 i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~ 466 (927)
++|..|+.+++...|.|.++.||||||||.+||+.|++++... ..+.+.+
T Consensus 79 i~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------------------~~~~~~~ 128 (311)
T cd02658 79 IKPSMFKALIGKGHPEFSTMRQQDALEFLLHLIDKLDRESFKN------------------------------LGLNPND 128 (311)
T ss_pred cCcHHHHHHHhccChhhcccccccHHHHHHHHHHHHHHhhccc------------------------------ccCCchh
Confidence 8999999999999999999999999999999999999987521 1234788
Q ss_pred ceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCC
Q 002408 467 VFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 546 (927)
Q Consensus 467 lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~ 546 (927)
+|.|.++++++|..|++++.+.++|.+|+|+||.......
T Consensus 129 ~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~---------------------------------------- 168 (311)
T cd02658 129 LFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEK---------------------------------------- 168 (311)
T ss_pred heEEEeeEEEEcCCCCCEEEeecceeEEeeeccccccccc----------------------------------------
Confidence 9999999999999999999999999999999985320000
Q ss_pred CCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEE
Q 002408 547 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 626 (927)
Q Consensus 547 ~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 626 (927)
.
T Consensus 169 --~----------------------------------------------------------------------------- 169 (311)
T cd02658 169 --E----------------------------------------------------------------------------- 169 (311)
T ss_pred --c-----------------------------------------------------------------------------
Confidence 0
Q ss_pred ecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCC
Q 002408 627 LEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERIS 706 (927)
Q Consensus 627 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (927)
+
T Consensus 170 ------------------------------------~------------------------------------------- 170 (311)
T cd02658 170 ------------------------------------E------------------------------------------- 170 (311)
T ss_pred ------------------------------------c-------------------------------------------
Confidence 0
Q ss_pred ccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCC
Q 002408 707 SCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786 (927)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C 786 (927)
........+|++||+.|+.+|.++ ++|
T Consensus 171 -------------------------------------------------~~~~~~~~sl~~~L~~~~~~e~i~----~~C 197 (311)
T cd02658 171 -------------------------------------------------GELVYEPVPLEDCLKAYFAPETIE----DFC 197 (311)
T ss_pred -------------------------------------------------ccccCCCCCHHHHHHHHcCccccc----ccc
Confidence 000023469999999999999996 589
Q ss_pred ccCcccceEEEEEEeeeCCCeEEEEEeceeee-cccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-cC
Q 002408 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GL 864 (927)
Q Consensus 787 ~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~l 864 (927)
++|++++.|+|+..|.++|+||+||||||.++ .+...|++..|.||. .| ....|+|+|||+|.| ++
T Consensus 198 ~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~-~l-----------~~~~Y~L~~vI~H~G~~~ 265 (311)
T cd02658 198 STCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPE-EL-----------GPGKYELIAFISHKGTSV 265 (311)
T ss_pred cCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCC-cC-----------CCCcEEEEEEEEccCCCC
Confidence 99999999999999999999999999999995 566789999999994 55 235799999999999 59
Q ss_pred CCCeEEEEEEeC--CCCCEEEECCceeeecCcCcccCCceEEEEEE
Q 002408 865 GGGHYTAYAKLI--DENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908 (927)
Q Consensus 865 ~~GHYtAy~k~~--~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~ 908 (927)
++||||||+|.. .+++||.|||+.|+++++.+|.+..||||||+
T Consensus 266 ~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 266 HSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred CCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 999999999975 34999999999999999999999999999996
No 14
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.7e-57 Score=500.07 Aligned_cols=288 Identities=31% Similarity=0.456 Sum_probs=249.1
Q ss_pred ccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHHhhC
Q 002408 321 GLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFA 400 (927)
Q Consensus 321 GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~ 400 (927)
||.|+||||||||+||||+|+|+|++++++.-... ........+++++|+.|+..|+.+. .+++|..|+..++...
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~l~~L~~~l~~~~-~~i~p~~~~~~l~~~~ 76 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPAR---RGANQSSDNLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRMAF 76 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccc---cccccchhHHHHHHHHHHHHHHhCC-CcCCcHHHHHHHHHHC
Confidence 89999999999999999999999999998752110 0122345689999999999998854 4899999999999999
Q ss_pred CCCC------CCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEE
Q 002408 401 PQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (927)
Q Consensus 401 ~~f~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (927)
+.|. +++|||||||+.+|||.|+++++.. ....++|.++|+|++.+
T Consensus 77 ~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------------------~~~~~~i~~~F~g~~~~ 128 (305)
T cd02657 77 PQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------------------GSKGSFIDQLFGIELET 128 (305)
T ss_pred cCcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------------------CCCCcHHHHhhceEEEE
Confidence 9994 5699999999999999999998541 12356799999999999
Q ss_pred EEEcCCCC-CeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 475 TLVCPVCS-KVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 475 ~i~C~~C~-~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
+++|..|+ .++.++|+|++|+|+||...
T Consensus 129 ~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~--------------------------------------------------- 157 (305)
T cd02657 129 KMKCTESPDEEEVSTESEYKLQCHISITT--------------------------------------------------- 157 (305)
T ss_pred EEEcCCCCCCCccccccceEEEeecCCCc---------------------------------------------------
Confidence 99999999 89999999999999997321
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 158 -------------------------------------------------------------------------------- 157 (305)
T cd02657 158 -------------------------------------------------------------------------------- 157 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
...+|++||+.++++|.. ..|+.|++..
T Consensus 158 -----------------------------------------------~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~ 185 (305)
T cd02657 158 -----------------------------------------------EVNYLQDGLKKGLEEEIE-----KHSPTLGRDA 185 (305)
T ss_pred -----------------------------------------------ccccHHHHHHHhhhhhhh-----hcCcccCCCc
Confidence 012789999999987764 5799999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeeecc--cccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-cCCCCeEE
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-GLGGGHYT 870 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~l~~GHYt 870 (927)
.++|+..|.++|++|+||||||.++.. ...|+++.|.||. .|||++|+. .+.+|+|+|||+|.| ++.+|||+
T Consensus 186 ~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~----~~~~Y~L~~vI~H~G~~~~~GHY~ 260 (305)
T cd02657 186 IYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPF-ELDLYELCT----PSGYYELVAVITHQGRSADSGHYV 260 (305)
T ss_pred eEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCc-eEecccccC----CCCcEEEEEEEEecCCCCCCcEEE
Confidence 999999999999999999999998743 4679999999995 899999997 346899999999999 69999999
Q ss_pred EEEEeCCCCCEEEECCceeeecCcCcccC-------CceEEEEEE
Q 002408 871 AYAKLIDENRWYHFDDSHVSPVSEGDIKT-------SAAYVLFYR 908 (927)
Q Consensus 871 Ay~k~~~~~~Wy~fnDs~V~~v~~~~V~s-------~~AYlLFY~ 908 (927)
||+|...+++||.|||+.|+++++++|.. .+|||||||
T Consensus 261 ~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 261 AWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 99998666999999999999999999864 699999996
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-56 Score=493.69 Aligned_cols=301 Identities=37% Similarity=0.615 Sum_probs=263.9
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHH
Q 002408 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 397 (927)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 397 (927)
++||.|+||||||||+||+|+|+|+|++++++. ...... ....++.++|+.++.+++.+....+.|..|..++.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~l~ 75 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCC-----NEGFCMMCALEAHVERALASSGPGSAPRIFSSNLK 75 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhcc-----CCcchHHHHHHHHHHHHHhCCCCccChHHHHHHHH
Confidence 589999999999999999999999999999864 221111 12347899999999999888888999999999999
Q ss_pred hhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEE
Q 002408 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (927)
Q Consensus 398 ~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~ 477 (927)
...+.|..+.||||+|||.+||+.||+++......... ........++|.++|+|+++++++
T Consensus 76 ~~~~~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------------------~~~~~~~~~~i~~~F~g~~~~~~~ 137 (304)
T cd02661 76 QISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------------------VDPSSQETTLVQQIFGGYLRSQVK 137 (304)
T ss_pred HHHHhhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------------------cCccccCCChhhhcCCcEEeeeEE
Confidence 99999999999999999999999999887653322100 011223467899999999999999
Q ss_pred cCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEe
Q 002408 478 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY 557 (927)
Q Consensus 478 C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~ 557 (927)
|..|++.+.++|+|+.|+|+||..
T Consensus 138 C~~C~~~s~~~e~~~~l~l~i~~~-------------------------------------------------------- 161 (304)
T cd02661 138 CLNCKHVSNTYDPFLDLSLDIKGA-------------------------------------------------------- 161 (304)
T ss_pred eCCCCCCcCccccceeeeeecCCC--------------------------------------------------------
Confidence 999999999999999999998621
Q ss_pred CCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHH
Q 002408 558 NHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 637 (927)
Q Consensus 558 ~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i 637 (927)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCC
Q 002408 638 DIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL 717 (927)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (927)
T Consensus 162 -------------------------------------------------------------------------------- 161 (304)
T cd02661 162 -------------------------------------------------------------------------------- 161 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEE
Q 002408 718 KPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATK 797 (927)
Q Consensus 718 ~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K 797 (927)
.+|++||+.|+.+|.+++++.|+|++|++.+.+.|
T Consensus 162 ---------------------------------------------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~ 196 (304)
T cd02661 162 ---------------------------------------------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASK 196 (304)
T ss_pred ---------------------------------------------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEE
Confidence 17899999999999999999999999999999999
Q ss_pred EEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeecc-CCCCeEEEEEEeC
Q 002408 798 KLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG-LGGGHYTAYAKLI 876 (927)
Q Consensus 798 ~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~-l~~GHYtAy~k~~ 876 (927)
+..|.++|++|+|||+||.++ ...|+++.|.|| +.|||.+|+.........|+|+|||+|.|. +++|||+||+|+
T Consensus 197 ~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~-~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~- 272 (304)
T cd02661 197 QLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS- 272 (304)
T ss_pred EEEEecCCcEEEEEEeccccC--CccccCCeEecC-CeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-
Confidence 999999999999999999988 568999999999 589999999876667789999999999995 599999999997
Q ss_pred CCCCEEEECCceeeecCcCcccCCceEEEEE
Q 002408 877 DENRWYHFDDSHVSPVSEGDIKTSAAYVLFY 907 (927)
Q Consensus 877 ~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY 907 (927)
.+++||.|||+.|+++++++|.+.+||||||
T Consensus 273 ~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 273 SNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred CCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 6789999999999999999999999999999
No 16
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.7e-56 Score=497.90 Aligned_cols=298 Identities=32% Similarity=0.554 Sum_probs=254.2
Q ss_pred CccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHH
Q 002408 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLA 397 (927)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~ 397 (927)
|++||.|+||||||||+||||+++|+|++++++..... ......++.++|+.|+..|+.+....+.|..+..+..
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~-----~~~~~~~~~~~l~~lf~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTE-----DDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRS 75 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcc-----cCcccccHHHHHHHHHHHHHhCCccccCcchhheecc
Confidence 78999999999999999999999999999998752110 1112456899999999999987766677766542222
Q ss_pred hhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEE
Q 002408 398 RFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477 (927)
Q Consensus 398 ~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~ 477 (927)
.....|..++||||||||.+||+.|+++++.. ...++|.++|.|.+...++
T Consensus 76 ~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------------------~~~~~i~~lF~g~~~~~~~ 126 (334)
T cd02659 76 FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------------------GQEGLIKNLFGGKLVNYII 126 (334)
T ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------------------cccchhhhhCceEEEeEEE
Confidence 23456888999999999999999999887531 1135699999999999999
Q ss_pred cCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEe
Q 002408 478 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVY 557 (927)
Q Consensus 478 C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~ 557 (927)
|..|++.+.+.++|+.|+|++|..
T Consensus 127 C~~C~~~s~~~e~f~~l~l~i~~~-------------------------------------------------------- 150 (334)
T cd02659 127 CKECPHESEREEYFLDLQVAVKGK-------------------------------------------------------- 150 (334)
T ss_pred ecCCCceecccccceEEEEEcCCC--------------------------------------------------------
Confidence 999999999999999999988521
Q ss_pred CCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHH
Q 002408 558 NHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADI 637 (927)
Q Consensus 558 ~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i 637 (927)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCC
Q 002408 638 DIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSIL 717 (927)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (927)
T Consensus 151 -------------------------------------------------------------------------------- 150 (334)
T cd02659 151 -------------------------------------------------------------------------------- 150 (334)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEE
Q 002408 718 KPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATK 797 (927)
Q Consensus 718 ~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K 797 (927)
.+|++||+.|+.+|.+++++.|.|++|++.+.|.|
T Consensus 151 ---------------------------------------------~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k 185 (334)
T cd02659 151 ---------------------------------------------KNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEK 185 (334)
T ss_pred ---------------------------------------------CCHHHHHHHhcCeeEecCCccEecCcCCCcccEEE
Confidence 17899999999999999999999999999999999
Q ss_pred EEEeeeCCCeEEEEEeceeee--cccccccceeeeccCCCcccccccccC-----------CCCceEEEEEEEEEeeccC
Q 002408 798 KLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSK-----------DGESYVYDLFAISNHYGGL 864 (927)
Q Consensus 798 ~~~I~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~-----------~~~~~~YdL~AVi~H~G~l 864 (927)
+..|.++|+||+|||+||.++ ...+.|+++.|.||. .|||++|+... ......|+|+|||+|.|+.
T Consensus 186 ~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~ 264 (334)
T cd02659 186 GVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPL-ELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDA 264 (334)
T ss_pred EEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCc-eecCccccccccccccccccccCCCCeeEEEEEEEEecCCC
Confidence 999999999999999999987 346789999999995 89999998753 2245789999999999999
Q ss_pred CCCeEEEEEEeCCCCCEEEECCceeeecCcCccc----------------------CCceEEEEEEEec
Q 002408 865 GGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK----------------------TSAAYVLFYRRVK 911 (927)
Q Consensus 865 ~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~----------------------s~~AYlLFY~R~~ 911 (927)
.+|||+||+|+..+++||.|||+.|+++++++|. +.+||||||+|++
T Consensus 265 ~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 265 HGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred CCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence 9999999999866899999999999999988883 4579999999976
No 17
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-51 Score=438.69 Aligned_cols=123 Identities=33% Similarity=0.656 Sum_probs=113.0
Q ss_pred CCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeec-ccccccceeeeccCCCcccccc
Q 002408 763 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLSKY 841 (927)
Q Consensus 763 ~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls~~ 841 (927)
.+|++||+.|+.+|.+++ |.|++| +..|.++|+||+||||||.++. +...|+++.|.||. .|
T Consensus 96 ~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~-~l----- 158 (240)
T cd02662 96 TTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPE-RL----- 158 (240)
T ss_pred CCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCC-cc-----
Confidence 489999999999999975 899999 6789999999999999999987 77899999999995 56
Q ss_pred cccCCCCceEEEEEEEEEeeccCCCCeEEEEEEeC--------------------CCCCEEEECCceeeecCcCcc-cCC
Q 002408 842 MKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLI--------------------DENRWYHFDDSHVSPVSEGDI-KTS 900 (927)
Q Consensus 842 ~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k~~--------------------~~~~Wy~fnDs~V~~v~~~~V-~s~ 900 (927)
....|+|+|||+|.|+.++|||+||+|.+ ..++||+|||+.|+++++++| .++
T Consensus 159 ------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~ 232 (240)
T cd02662 159 ------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQK 232 (240)
T ss_pred ------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCC
Confidence 34789999999999988999999999975 348999999999999999999 999
Q ss_pred ceEEEEEE
Q 002408 901 AAYVLFYR 908 (927)
Q Consensus 901 ~AYlLFY~ 908 (927)
+||||||+
T Consensus 233 ~aY~LfYe 240 (240)
T cd02662 233 SAYMLFYE 240 (240)
T ss_pred CEEEEEeC
Confidence 99999996
No 18
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-50 Score=451.35 Aligned_cols=150 Identities=39% Similarity=0.628 Sum_probs=133.9
Q ss_pred CCCCCHHHHHHHhhCCCccCCCCCCCCccCcc---------------------------cceEEEEEEeeeCCCeEEEEE
Q 002408 760 QEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE---------------------------HRQATKKLDLWMLPDVLVFHL 812 (927)
Q Consensus 760 ~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~---------------------------~~~a~K~~~I~~lP~iLiIhL 812 (927)
..++|++.||..||+-|+|.++|+|.|+.|-+ ...|.|++.|-.+|+||+|||
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihl 754 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHL 754 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehH
Confidence 46899999999999999999999999999965 124789999999999999999
Q ss_pred eceeee-cccccccceeeeccCCCcccccccccCCC-----CceEEEEEEEEEeeccCCCCeEEEEEEe-----------
Q 002408 813 KRFSYS-RYLKNKLDTFVNFPILNLDLSKYMKSKDG-----ESYVYDLFAISNHYGGLGGGHYTAYAKL----------- 875 (927)
Q Consensus 813 KRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~~~~~~-----~~~~YdL~AVi~H~G~l~~GHYtAy~k~----------- 875 (927)
|||... ++...|++.+|+|+ +-+||.+|+...-. .+..|+|+|||.|.|.|.+||||||+|.
T Consensus 755 Krf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~ 833 (877)
T KOG1873|consen 755 KRFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSN 833 (877)
T ss_pred hhhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccc
Confidence 999987 45579999999999 79999999874321 3458999999999999999999999984
Q ss_pred ---------CCCCCEEEECCceeeecCcCcccCCceEEEEEEEe
Q 002408 876 ---------IDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 910 (927)
Q Consensus 876 ---------~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~ 910 (927)
...++||+..|++|++|++++|+..+||||||+|+
T Consensus 834 ~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 834 SKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 14689999999999999999999999999999995
No 19
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-48 Score=411.54 Aligned_cols=146 Identities=51% Similarity=0.939 Sum_probs=135.3
Q ss_pred CCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCccccccc
Q 002408 763 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYM 842 (927)
Q Consensus 763 ~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~ 842 (927)
.+|++||+.|+.+|.+++.+.|.|++|++++.+.++..|.++|++|+|||+||.++.+...|+++.|.||.+.|||++|+
T Consensus 84 ~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~ 163 (230)
T cd02674 84 VTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYV 163 (230)
T ss_pred CCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccccc
Confidence 48999999999999999999999999999999999999999999999999999999888899999999998789999986
Q ss_pred ccC-CCCceEEEEEEEEEeeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEE
Q 002408 843 KSK-DGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908 (927)
Q Consensus 843 ~~~-~~~~~~YdL~AVi~H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~ 908 (927)
... .....+|+|+|||+|.|..++|||+||+|...+++||.|||+.|++++++++...+||||||+
T Consensus 164 ~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 164 DTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred CcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 322 235678999999999997799999999997666999999999999999999999999999996
No 20
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.5e-46 Score=393.28 Aligned_cols=130 Identities=27% Similarity=0.471 Sum_probs=109.0
Q ss_pred CHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccc
Q 002408 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843 (927)
Q Consensus 764 sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~ 843 (927)
+|++|++.|.++|.++ |.|++|+.. .|.|+..|+++|+||+||||||.+.. ++...+..+ .++|.+|+.
T Consensus 111 ~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~----~~~~~~~~~--~~~~~~~~~ 179 (245)
T cd02673 111 IDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRI----ATSDYLKKN--EEIMKKYCG 179 (245)
T ss_pred hHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeecc----ccccccccc--ccccccccC
Confidence 5788888888877764 899999975 89999999999999999999997643 233333333 577887775
Q ss_pred cCCCCceEEEEEEEEEeec-cCCCCeEEEEEEeCC-CCCEEEECCceeeecCcCccc---CCceEEEEEE
Q 002408 844 SKDGESYVYDLFAISNHYG-GLGGGHYTAYAKLID-ENRWYHFDDSHVSPVSEGDIK---TSAAYVLFYR 908 (927)
Q Consensus 844 ~~~~~~~~YdL~AVi~H~G-~l~~GHYtAy~k~~~-~~~Wy~fnDs~V~~v~~~~V~---s~~AYlLFY~ 908 (927)
....|+|+|||+|.| ++++||||||+|... +++||.|||+.|+++++++|. +.+||||||+
T Consensus 180 ----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 180 ----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred ----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 346799999999999 589999999999866 789999999999999999997 6799999996
No 21
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-46 Score=422.35 Aligned_cols=325 Identities=34% Similarity=0.641 Sum_probs=272.9
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC-CCccChHHH
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG-RAAVAPRAF 392 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~~~ 392 (927)
...-|+.||+|+|||||||++||+|.|.+..+...+...+. .........++.+++..++..||++. ...+.|..+
T Consensus 156 ~~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~---~~~~~~~~~~l~~~~~~~~~~~~s~~~~~~~sp~~~ 232 (492)
T KOG1867|consen 156 TTALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHS---KEPSSSGSSCLVCDLDRLFQALYSGHNRTPYSPFEL 232 (492)
T ss_pred eeeecccccccccHHHHHHHHHHHhhccchhhccchhhhcc---cCCCCCCCcchhhhhhhhhhHhhcCCCCCCcChHHH
Confidence 44668999999999999999999999999999998877443 11111225579999999999999998 899999999
Q ss_pred HHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEE
Q 002408 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (927)
Q Consensus 393 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 472 (927)
...+++..|.|.|++|||||||+..+++.+|.+.+...+.. .... + .....+++...|.|.+
T Consensus 233 l~~~~k~~~~~~g~~Qqda~eF~~~~~~~~~~~~~~~~k~~---~~~~------------~---~~~c~~iv~~~F~G~L 294 (492)
T KOG1867|consen 233 LNLVWKHSPNLAGYEQQDAHEFLIALLDRLHREKDDCGKSL---IASQ------------S---NKQCPCIVHTIFSGTL 294 (492)
T ss_pred HHHHHHhCcccccccccchHHHHHHhccccccccccccccc---cccc------------C---Ccccccccceeeccee
Confidence 99999999999999999999999999999998771111110 0000 0 0134688999999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceE
Q 002408 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (927)
Q Consensus 473 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 552 (927)
.+.++|..|+..|.+++||++|+|.||.....
T Consensus 295 ~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~------------------------------------------------ 326 (492)
T KOG1867|consen 295 QSDVTCQTCGSKSTTYDPFMDISLDIPDQFTS------------------------------------------------ 326 (492)
T ss_pred ccceeehhhcceeeeccCccceeeecchhccC------------------------------------------------
Confidence 99999999999999999999999999843100
Q ss_pred EEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCC
Q 002408 553 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 632 (927)
Q Consensus 553 ~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 632 (927)
+.
T Consensus 327 ---------------------------------------------------------------------~~--------- 328 (492)
T KOG1867|consen 327 ---------------------------------------------------------------------SS--------- 328 (492)
T ss_pred ---------------------------------------------------------------------cc---------
Confidence 00
Q ss_pred CHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCc
Q 002408 633 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 712 (927)
Q Consensus 633 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (927)
T Consensus 329 -------------------------------------------------------------------------------- 328 (492)
T KOG1867|consen 329 -------------------------------------------------------------------------------- 328 (492)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCccc
Q 002408 713 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 792 (927)
Q Consensus 713 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~ 792 (927)
......++.+||+.|..-|.+.......|..|+..
T Consensus 329 ---------------------------------------------~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~ 363 (492)
T KOG1867|consen 329 ---------------------------------------------VRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSK 363 (492)
T ss_pred ---------------------------------------------cccchhhhhhhhhhhhhhhhcCcccccccCCcccc
Confidence 00002379999999999999999999999999999
Q ss_pred ceEEEEEEeeeCCCeEEEEEeceeeeccc-ccccceeeeccCCCcccccccccC---C--CCceEEEEEEEEEeeccCCC
Q 002408 793 RQATKKLDLWMLPDVLVFHLKRFSYSRYL-KNKLDTFVNFPILNLDLSKYMKSK---D--GESYVYDLFAISNHYGGLGG 866 (927)
Q Consensus 793 ~~a~K~~~I~~lP~iLiIhLKRF~~~~~~-~~Ki~~~V~FPl~~LDls~~~~~~---~--~~~~~YdL~AVi~H~G~l~~ 866 (927)
+.++|++.|-++|.+|.+|||||.+.... +.|++++|.||. .|+|.+|+..+ . .....|+|+|||+|.|++++
T Consensus 364 ~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~-~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~S 442 (492)
T KOG1867|consen 364 QESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPV-LLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGS 442 (492)
T ss_pred cccccccccccCCceeeeeeccccccccccccccCcccccch-hhcCCccccccccccCCCCCceEEEEEEEEeccCCCC
Confidence 99999999999999999999999998433 339999999995 89999999851 1 24689999999999999999
Q ss_pred CeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCC
Q 002408 867 GHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913 (927)
Q Consensus 867 GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~ 913 (927)
||||||+| ..+.||+|||+.|+.+++++|.+..||+|||.++...
T Consensus 443 GHY~aY~r--~~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~ 487 (492)
T KOG1867|consen 443 GHYVAYRR--QSGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVE 487 (492)
T ss_pred CceEEEEE--eCCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence 99999999 5889999999999999999999999999999987654
No 22
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.9e-45 Score=380.43 Aligned_cols=127 Identities=27% Similarity=0.428 Sum_probs=111.8
Q ss_pred CHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccc
Q 002408 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMK 843 (927)
Q Consensus 764 sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~ 843 (927)
+|++||+.|+.+|.+++++.++ .+.+.|+..|+++|+||+||||||.++.....|+++.|.||+ .|
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~-~l------- 159 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQ-II------- 159 (228)
T ss_pred CHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeC-cc-------
Confidence 8999999999999998755433 345777888999999999999999998877899999999996 55
Q ss_pred cCCCCceEEEEEEEEEeeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCccc--------CCceEEEEEE
Q 002408 844 SKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK--------TSAAYVLFYR 908 (927)
Q Consensus 844 ~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~--------s~~AYlLFY~ 908 (927)
....|+|+|||+|.|++++|||+||+|+..+++||.|||+.|+++++++|. ..+||||||.
T Consensus 160 ----~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 160 ----QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ----CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 236899999999999999999999999877899999999999999988885 3589999994
No 23
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=3.8e-44 Score=387.63 Aligned_cols=258 Identities=40% Similarity=0.754 Sum_probs=214.6
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcC--CCCccChHHHHHH
Q 002408 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPRAFKGK 395 (927)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~~~~~~ 395 (927)
++||.|.||||||||+||||+++|+|++++++. +....+..++.....+++.+|+.|+..|+.. ....+.|..|..+
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~~~~ 80 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDFINA 80 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHHHHH
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeecccccc
Confidence 589999999999999999999999999999864 2222334445555668999999999999987 6789999999999
Q ss_pred HHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEE
Q 002408 396 LARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475 (927)
Q Consensus 396 l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~ 475 (927)
++...+.|.++.||||+|||..||+.|++++..... ...|........+++.++|.|++...
T Consensus 81 l~~~~~~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~f~~~~~~~ 142 (269)
T PF00443_consen 81 LSSINPSFSNGEQQDAHEFLSFLLDWLDEEFNSSFK------------------RKSWKNTNSSEDSLISDLFGGQFESS 142 (269)
T ss_dssp HHHHCGGGGSSSTEEHHHHHHHHHHHHHHHHTSCSS------------------HHHHHHHHCCEESHHHHHH-EEEEEE
T ss_pred ccccccccccccccchhhhhcccccccchhhccccc------------------cccccccccccccccccccccccccc
Confidence 999999999999999999999999999998865332 22345556667788999999999999
Q ss_pred EEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEE
Q 002408 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 555 (927)
Q Consensus 476 i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 555 (927)
+.|..|+..
T Consensus 143 ~~c~~c~~~----------------------------------------------------------------------- 151 (269)
T PF00443_consen 143 IKCSSCKNS----------------------------------------------------------------------- 151 (269)
T ss_dssp EEETTTTCE-----------------------------------------------------------------------
T ss_pred ccccccccc-----------------------------------------------------------------------
Confidence 999888743
Q ss_pred EeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHH
Q 002408 556 VYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGA 635 (927)
Q Consensus 556 ~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~ 635 (927)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCC
Q 002408 636 DIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDS 715 (927)
Q Consensus 636 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (927)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceE
Q 002408 716 ILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQA 795 (927)
Q Consensus 716 ~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a 795 (927)
T Consensus 152 -------------------------------------------------------------------------------- 151 (269)
T PF00443_consen 152 -------------------------------------------------------------------------------- 151 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEeeeCCCeEEEEEeceeeec--ccccccceeeeccCCCcccccccccCCC---CceEEEEEEEEEeeccCCCCeEE
Q 002408 796 TKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDG---ESYVYDLFAISNHYGGLGGGHYT 870 (927)
Q Consensus 796 ~K~~~I~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~~---~~~~YdL~AVi~H~G~l~~GHYt 870 (927)
+..|+++|++|+|||+||.++. ....|+...|.||++.|||++++..+.. ....|+|+|||+|.|+.++|||+
T Consensus 152 --~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~ 229 (269)
T PF00443_consen 152 --QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYV 229 (269)
T ss_dssp --EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEE
T ss_pred --ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEE
Confidence 2356789999999999997774 3579999999999779999999987653 35799999999999999999999
Q ss_pred EEEEeCCCCCEEEECCceeeecCcCcccC---CceEEEEE
Q 002408 871 AYAKLIDENRWYHFDDSHVSPVSEGDIKT---SAAYVLFY 907 (927)
Q Consensus 871 Ay~k~~~~~~Wy~fnDs~V~~v~~~~V~s---~~AYlLFY 907 (927)
||+|+..+++||.|||+.|++++.++|.. ..||||||
T Consensus 230 a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 230 AYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred EeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99998777789999999999999999987 99999999
No 24
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-46 Score=414.74 Aligned_cols=308 Identities=28% Similarity=0.504 Sum_probs=267.8
Q ss_pred cCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCC-CCchhHHHHHHHHHHHHHhcCCCCccChHH
Q 002408 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENP-LGMHGELALAFGDLLRKLWSSGRAAVAPRA 391 (927)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~ 391 (927)
++.+.|+|||+|-|+|||||+++|-|.++|.+++-++..+.. .+++ ..-...+.+.++.+|..|..+.-.++.|+.
T Consensus 89 sRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~---td~pd~s~~e~vl~~lQ~iF~hL~~s~lQyyVPeg 165 (944)
T KOG1866|consen 89 SRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGT---TDLPDMSGDEKVLRHLQVIFGHLAASQLQYYVPEG 165 (944)
T ss_pred CCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhccc---ccchhhcchHHHHHHHHHHHHHHHHHhhhhhcchh
Confidence 456779999999999999999999999999999988765333 1211 222334999999999999988889999999
Q ss_pred HHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEE
Q 002408 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (927)
Q Consensus 392 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 471 (927)
|.+.++......+..+||||-||+..|||.+++.|++.... .++.+.|+|.
T Consensus 166 ~Wk~Fr~~~~pln~reqhDA~eFf~sLld~~De~LKklg~p-----------------------------~lf~n~f~G~ 216 (944)
T KOG1866|consen 166 FWKQFRLWGEPLNLREQHDALEFFNSLLDSLDEALKKLGHP-----------------------------QLFSNTFGGS 216 (944)
T ss_pred HHHHhhccCCccchHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------------HHHHHHhcCc
Confidence 99999988888888999999999999999999999876432 3578899999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCce
Q 002408 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (927)
Q Consensus 472 ~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l 551 (927)
+...-.|..|-+.-...|+|+.|+|.|.
T Consensus 217 ysdqKIC~~CpHRY~~eE~F~~l~l~i~---------------------------------------------------- 244 (944)
T KOG1866|consen 217 YSDQKICQGCPHRYECEESFTTLNLDIR---------------------------------------------------- 244 (944)
T ss_pred cchhhhhccCCcccCccccceeeeeecc----------------------------------------------------
Confidence 9999999999999999999999999872
Q ss_pred EEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCC
Q 002408 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631 (927)
Q Consensus 552 ~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~ 631 (927)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCC
Q 002408 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 711 (927)
Q Consensus 632 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (927)
T Consensus 245 -------------------------------------------------------------------------------- 244 (944)
T KOG1866|consen 245 -------------------------------------------------------------------------------- 244 (944)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcc
Q 002408 712 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 791 (927)
Q Consensus 712 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~ 791 (927)
.-+|++.|+.|.+.|.|+|.|+|+|++|++
T Consensus 245 --------------------------------------------------~~nLeesLeqfv~gevlEG~nAYhCeKCde 274 (944)
T KOG1866|consen 245 --------------------------------------------------HQNLEESLEQFVKGEVLEGANAYHCEKCDE 274 (944)
T ss_pred --------------------------------------------------cchHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 017999999999999999999999999999
Q ss_pred cceEEEEEEeeeCCCeEEEEEeceeee--cccccccceeeeccCCCcccccccccCC-----------------CCceEE
Q 002408 792 HRQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKD-----------------GESYVY 852 (927)
Q Consensus 792 ~~~a~K~~~I~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~~-----------------~~~~~Y 852 (927)
++...|++.|.+||.+|+||||||.|+ +....|-+..+.|| ..|||.||+...- .++.+|
T Consensus 275 K~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~Y 353 (944)
T KOG1866|consen 275 KVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKY 353 (944)
T ss_pred hhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCccee
Confidence 999999999999999999999999998 77789999999999 6899999987431 156899
Q ss_pred EEEEEEEeeccCCCCeEEEEEEeC---CCCCEEEECCceeeecCcCcccC--------------------CceEEEEEEE
Q 002408 853 DLFAISNHYGGLGGGHYTAYAKLI---DENRWYHFDDSHVSPVSEGDIKT--------------------SAAYVLFYRR 909 (927)
Q Consensus 853 dL~AVi~H~G~l~~GHYtAy~k~~---~~~~Wy~fnDs~V~~v~~~~V~s--------------------~~AYlLFY~R 909 (927)
+|.||++|.|...+|||++|+|.. ..++||+|||..|++.+-.++.. -+||||||+|
T Consensus 354 eLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer 433 (944)
T KOG1866|consen 354 ELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYER 433 (944)
T ss_pred EEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHH
Confidence 999999999999999999999864 35799999999999998655521 3699999999
Q ss_pred ecCCch
Q 002408 910 VKSKTK 915 (927)
Q Consensus 910 ~~~~~~ 915 (927)
.+....
T Consensus 434 ~~d~p~ 439 (944)
T KOG1866|consen 434 MDDIPT 439 (944)
T ss_pred hcCCCc
Confidence 987543
No 25
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-44 Score=397.24 Aligned_cols=300 Identities=29% Similarity=0.543 Sum_probs=254.2
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC----------
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG---------- 383 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~---------- 383 (927)
...+|.+||+|+||+||||||||+|+++|.|...++.. ..+-...+.....++.++|.+|+..|.++.
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~--~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~ 379 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQ--ERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSN 379 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccc--cceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccc
Confidence 56789999999999999999999999999999888765 222222334446789999999999998754
Q ss_pred CCccChHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCc
Q 002408 384 RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSL 463 (927)
Q Consensus 384 ~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~si 463 (927)
...|+|..|+..+++-+|.|+..+||||||||++||+.|.+-..... .-
T Consensus 380 qngIsP~mFK~~igknHpeFst~~QQDA~EFllfLl~ki~~n~rs~~-------------------------------~n 428 (763)
T KOG0944|consen 380 QNGISPLMFKALIGKNHPEFSTNRQQDAQEFLLFLLEKIRENSRSSL-------------------------------PN 428 (763)
T ss_pred cCCcCHHHHHHHHcCCCccccchhhhhHHHHHHHHHHHHhhcccccC-------------------------------CC
Confidence 24689999999999999999999999999999999999986431110 22
Q ss_pred cccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhc
Q 002408 464 IVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTAC 543 (927)
Q Consensus 464 i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~ 543 (927)
+.++|...+..++.|..|+++++++++-+.+.||||....
T Consensus 429 ptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~---------------------------------------- 468 (763)
T KOG0944|consen 429 PTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNE---------------------------------------- 468 (763)
T ss_pred HHHHHHhhhhhhhhhhccccccccchhheeeEeecccccc----------------------------------------
Confidence 8899999999999999999999999999999999973100
Q ss_pred CCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccE
Q 002408 544 CLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPL 623 (927)
Q Consensus 544 ~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~ 623 (927)
T Consensus 469 -------------------------------------------------------------------------------- 468 (763)
T KOG0944|consen 469 -------------------------------------------------------------------------------- 468 (763)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecC
Q 002408 624 VTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDE 703 (927)
Q Consensus 624 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (927)
T Consensus 469 -------------------------------------------------------------------------------- 468 (763)
T KOG0944|consen 469 -------------------------------------------------------------------------------- 468 (763)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCC
Q 002408 704 RISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDM 783 (927)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~ 783 (927)
....+++..||++|+.+ ++.+
T Consensus 469 -------------------------------------------------------v~~~v~~~~cleaff~p-q~~d--- 489 (763)
T KOG0944|consen 469 -------------------------------------------------------VREKVPISACLEAFFEP-QVDD--- 489 (763)
T ss_pred -------------------------------------------------------ccccCCHHHHHHHhcCC-cchh---
Confidence 01245899999999999 6544
Q ss_pred CCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCC----------------
Q 002408 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDG---------------- 847 (927)
Q Consensus 784 w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~---------------- 847 (927)
++|..|+.+..|+|+..+..+|++||||.+||.+..|...|++..|+.| +.||++.|......
T Consensus 490 f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iemp-e~ldls~~rs~g~~p~ee~lpde~~~~~~~ 568 (763)
T KOG0944|consen 490 FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMP-EELDLSSYRSKGLQPGEEALPDEAPETSEF 568 (763)
T ss_pred hhhHhhcCccccccccccccCCceEEEEeeEEEecCceeeeeccceecc-hhhchhhhhhcCCCCcccccCCcCcccCcc
Confidence 8999999999999999999999999999999999999999999999999 89999999875410
Q ss_pred --------------------------------------------------------------------------------
Q 002408 848 -------------------------------------------------------------------------------- 847 (927)
Q Consensus 848 -------------------------------------------------------------------------------- 847 (927)
T Consensus 569 ~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~ 648 (763)
T KOG0944|consen 569 AADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFS 648 (763)
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCc
Confidence
Q ss_pred ------------------------------------------------------CceEEEEEEEEEeec-cCCCCeEEEE
Q 002408 848 ------------------------------------------------------ESYVYDLFAISNHYG-GLGGGHYTAY 872 (927)
Q Consensus 848 ------------------------------------------------------~~~~YdL~AVi~H~G-~l~~GHYtAy 872 (927)
.+.+|.|+|+|.|.| +..+|||+|+
T Consensus 649 ~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~h 728 (763)
T KOG0944|consen 649 RNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCH 728 (763)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEE
Confidence 457899999999999 8999999999
Q ss_pred EEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEe
Q 002408 873 AKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 910 (927)
Q Consensus 873 ~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~ 910 (927)
+|. .|+|..|||+.|- .+.+ --...+||.||+|.
T Consensus 729 irK--egkWVlfNDeKv~-~S~~-ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 729 IRK--EGKWVLFNDEKVA-ASQE-PPKDLGYVYLYTRI 762 (763)
T ss_pred Eee--cCcEEEEcchhhh-hccC-ChhhcceEEEEEec
Confidence 995 6999999999997 3332 33567999999996
No 26
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.2e-44 Score=396.07 Aligned_cols=158 Identities=25% Similarity=0.345 Sum_probs=123.2
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhcC--CcccccC---------CCC-----CchhHHHHHHHHHHHHHhcC
Q 002408 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY--SDEINTE---------NPL-----GMHGELALAFGDLLRKLWSS 382 (927)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~--~~~~~~~---------~~~-----~~~~~l~~~l~~L~~~l~~~ 382 (927)
|+||.|+||||||||+||||+++|+||+++++.- ..+...+ ... ....+++.+|+.||..|+.+
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999998741 1100000 000 01236999999999999998
Q ss_pred CCCccChHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCC
Q 002408 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (927)
Q Consensus 383 ~~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (927)
...++.|..++..+.. .|||||||+..||+.||++++.....+.. ++ ........+
T Consensus 81 ~~~~v~P~~~l~~l~~--------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~--------~~--------~~~~~~~~~ 136 (343)
T cd02666 81 NTRSVTPSKELAYLAL--------RQQDVTECIDNVLFQLEVALEPISNAFAG--------PD--------TEDDKEQSD 136 (343)
T ss_pred CCCccCcHHHHHhccc--------cccchHHHHHHHHHHHHHHhcCccccccC--------cc--------cccccchhh
Confidence 8899999999886642 99999999999999999999754321110 00 000123467
Q ss_pred ccccceeEEEEEEEEcCCCC---CeeeeecCCeeEeecCCC
Q 002408 463 LIVDVFQGQYKSTLVCPVCS---KVSITFDPFMYLTLPLPS 500 (927)
Q Consensus 463 ii~~lF~G~~~s~i~C~~C~---~~s~~~e~f~~LsL~ip~ 500 (927)
+|.++|.|+++++++|..|+ ..+.+.|+|++|+|+|+.
T Consensus 137 ~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~ 177 (343)
T cd02666 137 LIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGK 177 (343)
T ss_pred hhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCc
Confidence 89999999999999999997 889999999999999974
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-42 Score=382.83 Aligned_cols=299 Identities=28% Similarity=0.474 Sum_probs=253.2
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (927)
+...|.+||+|.|.||||||.||+|+.+..||+..... ..++|.+ +..++.+|+++|..|.. +..+++..+|.
T Consensus 188 KkeTGYVGlrNqGATCYmNSLlQslffi~~FRk~Vy~i-----pTd~p~g-rdSValaLQr~Fynlq~-~~~PvdTtelt 260 (1089)
T COG5077 188 KKETGYVGLRNQGATCYMNSLLQSLFFIAKFRKDVYGI-----PTDHPRG-RDSVALALQRLFYNLQT-GEEPVDTTELT 260 (1089)
T ss_pred ccceeeeeeccCCceeeHHHHHHHHHHHHHHHHHhhcC-----CCCCCCc-cchHHHHHHHHHHHHhc-cCCCcchHHhh
Confidence 45789999999999999999999999999999988653 3334433 45699999999999987 56788888888
Q ss_pred HHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEE
Q 002408 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (927)
Q Consensus 394 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (927)
+..+. ..+....|||.|||-..|.|.|+..++...- ...+..+|-|.++
T Consensus 261 rsfgW--ds~dsf~QHDiqEfnrVl~DnLEksmrgt~V-----------------------------Enaln~ifVgkmk 309 (1089)
T COG5077 261 RSFGW--DSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV-----------------------------ENALNGIFVGKMK 309 (1089)
T ss_pred hhcCc--ccchHHHHHhHHHHHHHHHHHHHHhhcCChh-----------------------------hhHHhHHHHHHhh
Confidence 87653 3566789999999999999999975432110 1127889999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 474 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
+-+.|-.-.+.|.+.|.|+++.|.+.
T Consensus 310 syikCvnvnyEsarvedfwdiqlNvK------------------------------------------------------ 335 (1089)
T COG5077 310 SYIKCVNVNYESARVEDFWDIQLNVK------------------------------------------------------ 335 (1089)
T ss_pred ceeeEEEechhhhhHHHHHHHHhccc------------------------------------------------------
Confidence 99999998888888888888777642
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 336 -------------------------------------------------------------------------------- 335 (1089)
T COG5077 336 -------------------------------------------------------------------------------- 335 (1089)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
..-+|+|.++.|.+.|+|+|+|.|+|+.-+ .|
T Consensus 336 -----------------------------------------------~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lq 367 (1089)
T COG5077 336 -----------------------------------------------GMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQ 367 (1089)
T ss_pred -----------------------------------------------chhhHHHHHHHhhhheeccCCccccccccc-ch
Confidence 112799999999999999999999998754 68
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeee--cccccccceeeeccCCCcccccccccCCC----CceEEEEEEEEEeeccCCCC
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSKDG----ESYVYDLFAISNHYGGLGGG 867 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~~~----~~~~YdL~AVi~H~G~l~~G 867 (927)
.|.|-.-+.++|+||-++||||.|+ +....||++.-+||+ .+||.+|+..... ....|.||||++|.|.+.+|
T Consensus 368 dAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~-eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~G 446 (1089)
T COG5077 368 DAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPL-EIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEG 446 (1089)
T ss_pred hhccceeeccCchHHHHHHHHhccccccCceeeecccccCcc-hhccccccCchhhhhcccCcEEEEEEEEEeccccCCc
Confidence 9999999999999999999999987 778899999999996 8999999986432 33899999999999999999
Q ss_pred eEEEEEEeCCCCCEEEECCceeeecCcCcccC----------------------CceEEEEEEEecCC
Q 002408 868 HYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT----------------------SAAYVLFYRRVKSK 913 (927)
Q Consensus 868 HYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s----------------------~~AYlLFY~R~~~~ 913 (927)
||+|+.|-..+|.||.|||.+|++++..+|.. -+||||.|-|++..
T Consensus 447 HyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~ 514 (1089)
T COG5077 447 HYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSML 514 (1089)
T ss_pred eEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHH
Confidence 99999998889999999999999999777731 26999999999854
No 28
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-41 Score=359.47 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=118.2
Q ss_pred CCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCC----eEEEEEeceeeec-------ccccccceeeec
Q 002408 763 ISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPD----VLVFHLKRFSYSR-------YLKNKLDTFVNF 831 (927)
Q Consensus 763 ~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~----iLiIhLKRF~~~~-------~~~~Ki~~~V~F 831 (927)
++|.+||+.|+++|.. +.|+|++|++++.|+|++.|+++|+ ||+||||||.+.. ....|++..|.|
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 4899999999999964 4589999999999999999999999 9999999999653 234688899999
Q ss_pred cCCCcccccccccCCCCceEEEEEEEEEeecc-CCCCeEEEEEEeCC----CCCEEEECCceeeecCcCcccCCceEEEE
Q 002408 832 PILNLDLSKYMKSKDGESYVYDLFAISNHYGG-LGGGHYTAYAKLID----ENRWYHFDDSHVSPVSEGDIKTSAAYVLF 906 (927)
Q Consensus 832 Pl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~-l~~GHYtAy~k~~~----~~~Wy~fnDs~V~~v~~~~V~s~~AYlLF 906 (927)
|. .+|+..+.........+|+|+|||+|.|. .++||||||+|... .++||.|||..|++|++ .|||||
T Consensus 194 ~~-~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLf 266 (268)
T cd02672 194 KA-IDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILL 266 (268)
T ss_pred cc-cccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeee
Confidence 95 67777666555556689999999999995 59999999999754 68999999999999998 899999
Q ss_pred EE
Q 002408 907 YR 908 (927)
Q Consensus 907 Y~ 908 (927)
|+
T Consensus 267 Y~ 268 (268)
T cd02672 267 YQ 268 (268)
T ss_pred cC
Confidence 95
No 29
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-39 Score=348.47 Aligned_cols=142 Identities=46% Similarity=0.819 Sum_probs=127.0
Q ss_pred CCHHHHHHHhhCCCccCCCCCCCCccCc--ccceEEEEEEeeeCCCeEEEEEeceeeec-ccccccceeeeccCCCcccc
Q 002408 763 ISLFSCLDAFLTEEPLGPDDMWYCPQCK--EHRQATKKLDLWMLPDVLVFHLKRFSYSR-YLKNKLDTFVNFPILNLDLS 839 (927)
Q Consensus 763 ~sL~~cL~~f~~~E~L~~~n~w~C~~Ck--~~~~a~K~~~I~~lP~iLiIhLKRF~~~~-~~~~Ki~~~V~FPl~~LDls 839 (927)
.+|++||+.++.+|.+.+ ..|..|+ +.+.+.++..|.++|++|+|||+||.++. +...|++..|.|| +.|++.
T Consensus 99 ~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~ 174 (255)
T cd02257 99 VSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLS 174 (255)
T ss_pred CcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCC-CcccCc
Confidence 489999999999999876 6788998 78999999999999999999999999986 7789999999999 589999
Q ss_pred ccccc------CCCCceEEEEEEEEEeecc-CCCCeEEEEEEeCCCCCEEEECCceeeecCcCcc-----cCCceEEEEE
Q 002408 840 KYMKS------KDGESYVYDLFAISNHYGG-LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDI-----KTSAAYVLFY 907 (927)
Q Consensus 840 ~~~~~------~~~~~~~YdL~AVi~H~G~-l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V-----~s~~AYlLFY 907 (927)
.++.. .......|+|+|||+|.|. .++|||+||+|+...++||.|||..|++++.+++ ...+||||||
T Consensus 175 ~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y 254 (255)
T cd02257 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFY 254 (255)
T ss_pred cccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEE
Confidence 88753 2335678999999999995 5999999999986669999999999999999888 5789999999
Q ss_pred E
Q 002408 908 R 908 (927)
Q Consensus 908 ~ 908 (927)
+
T Consensus 255 ~ 255 (255)
T cd02257 255 E 255 (255)
T ss_pred C
Confidence 6
No 30
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=366.61 Aligned_cols=152 Identities=36% Similarity=0.684 Sum_probs=139.2
Q ss_pred CHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeee--cccccccceeeeccCCCcccccc
Q 002408 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKY 841 (927)
Q Consensus 764 sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~ 841 (927)
+++++|.+|.++|.|++.|.|-|++||+++.|.|-+.|..+|-+|.||||||.|+ ...|.|+++.|.|| +.|||..|
T Consensus 215 sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~ 293 (1203)
T KOG4598|consen 215 SVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDY 293 (1203)
T ss_pred hHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCc-ccccHHHh
Confidence 8999999999999999999999999999999999999999999999999999886 56789999999999 79999999
Q ss_pred cccCCC------------------------------------------------------------------CceEEEEE
Q 002408 842 MKSKDG------------------------------------------------------------------ESYVYDLF 855 (927)
Q Consensus 842 ~~~~~~------------------------------------------------------------------~~~~YdL~ 855 (927)
+..... ++..|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 974210 56789999
Q ss_pred EEEEeeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCccc-------------CCceEEEEEEEecCCchh
Q 002408 856 AISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK-------------TSAAYVLFYRRVKSKTKA 916 (927)
Q Consensus 856 AVi~H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~-------------s~~AYlLFY~R~~~~~~~ 916 (927)
||..|.|+..||||+||+|+...++||.|||.+|+-+++.+|. +.+||||.|||.+.+-+.
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~krn~ 447 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPKRNA 447 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCccccc
Confidence 9999999999999999999999999999999999999988884 357999999999976443
No 31
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-38 Score=337.71 Aligned_cols=296 Identities=24% Similarity=0.437 Sum_probs=243.7
Q ss_pred ccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcc-cccCCCCCchhHHHHHHHHHHHHHhcCC----CCccChHHHH
Q 002408 319 LAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDE-INTENPLGMHGELALAFGDLLRKLWSSG----RAAVAPRAFK 393 (927)
Q Consensus 319 ~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~~i~p~~~~ 393 (927)
.+||.|+||+||+||++|.|++...+..-+....+.. ....+| ..+|.+++.+|+..|.... ...+.|..|+
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P---~~~l~CQl~kll~~mk~~p~~~y~ngi~p~~fk 379 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP---LECLFCQLMKLLSKMKETPDNEYVNGISPLDFK 379 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC---chhHHHHHHHHHhhccCCCCccccCCcChhhHH
Confidence 8999999999999999999999988877665442222 222233 3579999999999998754 4578999999
Q ss_pred HHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEE
Q 002408 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (927)
Q Consensus 394 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (927)
..+++-++.|..++||||||||.|||+.|.+...... .+.|.++|...+.
T Consensus 380 ~~igq~h~eFg~~~QQDA~EFLlfLL~kirk~~~S~~------------------------------~~~It~lf~Fe~e 429 (749)
T COG5207 380 MLIGQDHPEFGKFAQQDAHEFLLFLLEKIRKGERSYL------------------------------IPPITSLFEFEVE 429 (749)
T ss_pred HHHcCCchhhhhhhhhhHHHHHHHHHHHHhhccchhc------------------------------CCCcchhhhhhhc
Confidence 9999999999999999999999999999986543322 2348899999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 474 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
.++.|..|+.++.++++...+.+++...
T Consensus 430 ~rlsC~~C~~v~ySye~~~~i~i~le~n---------------------------------------------------- 457 (749)
T COG5207 430 RRLSCSGCMDVSYSYESMLMICIFLEGN---------------------------------------------------- 457 (749)
T ss_pred ceecccccccccccccceEEEEeecccC----------------------------------------------------
Confidence 9999999999999887766655544210
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 458 -------------------------------------------------------------------------------- 457 (749)
T COG5207 458 -------------------------------------------------------------------------------- 457 (749)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 458 -------------------------------------------------------------------------------- 457 (749)
T COG5207 458 -------------------------------------------------------------------------------- 457 (749)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
..+.++.+|+++|+.+.+++ |.|+.||.+.
T Consensus 458 ----------------------------------------------~E~~di~~~v~a~f~pdtiE----~~CenCk~K~ 487 (749)
T COG5207 458 ----------------------------------------------DEPQDIRKSVEAFFLPDTIE----WSCENCKGKK 487 (749)
T ss_pred ----------------------------------------------cchhhHHHHHHheECcccee----eehhhhcCcc
Confidence 12347899999999999996 9999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCC-CcccccccccCCC-------------------------
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL-NLDLSKYMKSKDG------------------------- 847 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~-~LDls~~~~~~~~------------------------- 847 (927)
.|+++.-|.++|++||++..||+..+|...|+..++..--+ -++++.|+..-+.
T Consensus 488 ~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I~qL~~ 567 (749)
T COG5207 488 KASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLIRQLVD 567 (749)
T ss_pred cccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHHHHHHH
Confidence 99999999999999999999999999999999888776521 2788888875110
Q ss_pred --------------------------------------------------------------------------------
Q 002408 848 -------------------------------------------------------------------------------- 847 (927)
Q Consensus 848 -------------------------------------------------------------------------------- 847 (927)
T Consensus 568 mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal~~~n~ 647 (749)
T COG5207 568 MGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKALMDMNT 647 (749)
T ss_pred cCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHHHHccC
Confidence
Q ss_pred ------------------------------------CceEEEEEEEEEeec-cCCCCeEEEEEEeCCCC--CEEEECCce
Q 002408 848 ------------------------------------ESYVYDLFAISNHYG-GLGGGHYTAYAKLIDEN--RWYHFDDSH 888 (927)
Q Consensus 848 ------------------------------------~~~~YdL~AVi~H~G-~l~~GHYtAy~k~~~~~--~Wy~fnDs~ 888 (927)
...-|.|.|||+|.| +...|||++|+|....+ +|..|||+.
T Consensus 648 d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek 727 (749)
T COG5207 648 DSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEK 727 (749)
T ss_pred CchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccch
Confidence 123499999999999 89999999999976555 579999999
Q ss_pred eeecCcCcccCCceEEEEEEE
Q 002408 889 VSPVSEGDIKTSAAYVLFYRR 909 (927)
Q Consensus 889 V~~v~~~~V~s~~AYlLFY~R 909 (927)
+-.++.-++...+.||.||+|
T Consensus 728 ~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 728 TVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred heehhhHHHHhhCCeEEEEec
Confidence 988887677788999999998
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-36 Score=376.83 Aligned_cols=305 Identities=30% Similarity=0.431 Sum_probs=259.1
Q ss_pred CCCCCc-cccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHH
Q 002408 314 GEKGGL-AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAF 392 (927)
Q Consensus 314 ~~~~g~-~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~ 392 (927)
+...|. +||.|+||||||||+||+|+.++.||+.+.+.-. ..........+..+|+.||..|..+..+++.|..+
T Consensus 164 k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~----~~~~~~~~~~v~~~lq~lF~~LQ~s~~k~Vdt~~~ 239 (1093)
T KOG1863|consen 164 KRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPP----FTGHEDPRRSIPLALQRLFYELQMSKRKYVDTSEL 239 (1093)
T ss_pred hhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCC----CCCcccccchHHHHHHHHHHHHhhcCCCCcCchhh
Confidence 345565 9999999999999999999999999999976421 12222334459999999999999999899999999
Q ss_pred HHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEE
Q 002408 393 KGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472 (927)
Q Consensus 393 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~ 472 (927)
...++... ..+.+|||+|||+..|+|.|+..+..... ...+.++|.|.+
T Consensus 240 ~~~~~~~~--~~~~~QqDvqEf~~~l~d~LE~~~~~~~~-----------------------------~~~l~~lf~g~~ 288 (1093)
T KOG1863|consen 240 TKSLGWDS--NDSFEQQDVQEFLTKLLDWLEDSMIDAKV-----------------------------ENTLQDLFTGKM 288 (1093)
T ss_pred hhhhhccc--ccHHhhhhHHHHHHHHHHHHHhhccchhh-----------------------------hhhhhhhhcCCc
Confidence 99998755 56689999999999999999987754331 234899999999
Q ss_pred EEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceE
Q 002408 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (927)
Q Consensus 473 ~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 552 (927)
.+.+.|..|...+.+.|.|+++.|++-
T Consensus 289 ~~~i~c~~~~~~s~r~e~f~d~ql~~~----------------------------------------------------- 315 (1093)
T KOG1863|consen 289 KSVIKCIDVDFESSRSESFLDLQLNGK----------------------------------------------------- 315 (1093)
T ss_pred ceEEEEEeeeeeccccccccCcccccc-----------------------------------------------------
Confidence 999999999999988999988877652
Q ss_pred EEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCC
Q 002408 553 LAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHL 632 (927)
Q Consensus 553 ~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~ 632 (927)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCc
Q 002408 633 SGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQ 712 (927)
Q Consensus 633 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (927)
T Consensus 316 -------------------------------------------------------------------------------- 315 (1093)
T KOG1863|consen 316 -------------------------------------------------------------------------------- 315 (1093)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCccc
Q 002408 713 KDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEH 792 (927)
Q Consensus 713 ~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~ 792 (927)
+..+|.++|+.|++.|+|.++|. ||..|...
T Consensus 316 ------------------------------------------------g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~ 346 (1093)
T KOG1863|consen 316 ------------------------------------------------GVKNLEDSLHLYFEAEILLGDNK-YDAECHGL 346 (1093)
T ss_pred ------------------------------------------------chhhHHHHHHHhhhHHHhcCCcc-ccccccch
Confidence 11258999999999999999998 99999999
Q ss_pred ceEEEEEEeeeCCCeEEEEEeceeee--cccccccceeeeccCCCcccccccccC----CCCceEEEEEEEEEeeccCCC
Q 002408 793 RQATKKLDLWMLPDVLVFHLKRFSYS--RYLKNKLDTFVNFPILNLDLSKYMKSK----DGESYVYDLFAISNHYGGLGG 866 (927)
Q Consensus 793 ~~a~K~~~I~~lP~iLiIhLKRF~~~--~~~~~Ki~~~V~FPl~~LDls~~~~~~----~~~~~~YdL~AVi~H~G~l~~ 866 (927)
+.|.|.+.+.++|++|.|||+||.|+ +....|+++...|| ..|||.+|+... ......|+|+||..|.|...+
T Consensus 347 ~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ 425 (1093)
T KOG1863|consen 347 QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHS 425 (1093)
T ss_pred hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhcccccccC
Confidence 99999999999999999999999997 56788999999999 499999998741 113359999999999889999
Q ss_pred CeEEEEEEeCCCCCEEEECCceeeecCcCcccC----------------CceEEEEEEEecCCchh
Q 002408 867 GHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKT----------------SAAYVLFYRRVKSKTKA 916 (927)
Q Consensus 867 GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s----------------~~AYlLFY~R~~~~~~~ 916 (927)
|||++|++....++|+.|||..|+.+++.++.. ..||+|+|-|.+.....
T Consensus 426 ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~ 491 (1093)
T KOG1863|consen 426 GHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKI 491 (1093)
T ss_pred ccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhh
Confidence 999999998889999999999999999766532 12899999999876444
No 33
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=8.9e-35 Score=304.62 Aligned_cols=123 Identities=23% Similarity=0.442 Sum_probs=108.3
Q ss_pred CCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccc
Q 002408 762 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY 841 (927)
Q Consensus 762 ~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~ 841 (927)
.+||++||+.|++.|. |+++|+|||||||||.++.+...|+++.|.|| ..|||++|
T Consensus 79 ~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~ 134 (241)
T cd02670 79 GITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDF 134 (241)
T ss_pred cCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEECCC-CcCCchhh
Confidence 5699999999999997 89999999999999999887779999999999 58999999
Q ss_pred cccCC----------------------CCceEEEEEEEEEeec-cCCCCeEEEEEEeCC-----------CCCEEEECCc
Q 002408 842 MKSKD----------------------GESYVYDLFAISNHYG-GLGGGHYTAYAKLID-----------ENRWYHFDDS 887 (927)
Q Consensus 842 ~~~~~----------------------~~~~~YdL~AVi~H~G-~l~~GHYtAy~k~~~-----------~~~Wy~fnDs 887 (927)
+.... .....|+|+|||+|.| ++.+||||||+|+.. ++.||.|||+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~ 214 (241)
T cd02670 135 VADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDM 214 (241)
T ss_pred cccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCc
Confidence 86531 2346899999999999 699999999999865 3899999999
Q ss_pred eeeecCc------CcccCCceEEEEEE
Q 002408 888 HVSPVSE------GDIKTSAAYVLFYR 908 (927)
Q Consensus 888 ~V~~v~~------~~V~s~~AYlLFY~ 908 (927)
.|+.+.. +.+.+.+|||||||
T Consensus 215 ~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 215 ADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred ccccccccccccchhcccCCceEEEeC
Confidence 9887653 25688999999996
No 34
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=327.46 Aligned_cols=332 Identities=28% Similarity=0.443 Sum_probs=251.2
Q ss_pred CCCCccccccCCCcchHH--HHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcC--CCCccChH
Q 002408 315 EKGGLAGLQNLGNTCFMN--SALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSS--GRAAVAPR 390 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmN--SvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~--~~~~i~p~ 390 (927)
.....-|..|.+++|+-| ++.|.+..+-.++...+... .......+....+...+..++...... ....+.|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~p~ 304 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYL---TSLKRSYIIKEELLTCLLDLFSSISSRKKLVGRISPT 304 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchh---hcccchhhhhHHHHHHhhhhccchhhhcccccccCcc
Confidence 345688999999999999 99999999988885443321 111111122333444444444433322 24578999
Q ss_pred HHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCc--ccccCCCCCChHHHHHHHHH--hhcccCCCcccc
Q 002408 391 AFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPY--IEMKDSGGRPDEEVANECWK--NHKARNDSLIVD 466 (927)
Q Consensus 391 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~--~~~~~~~~~~~~~~a~~~w~--~~~~~~~sii~~ 466 (927)
.|...+++....|..+.|||||||+.++++.++|.+.+...... +....++|.... .+..+|. .+......+++.
T Consensus 305 ~~~~~~~~~~~~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~-~~~~~~~~~~~~~~~~~~v~~ 383 (587)
T KOG1864|consen 305 RFISDLIKENELFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSST-SAASWTNKGHHKSLRENWVSK 383 (587)
T ss_pred hhhhhhhhcCCccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCcccc-ccccccccccccccchhHHHH
Confidence 99999999999999999999999999999999988766442211 111001111110 0111111 334455678999
Q ss_pred ceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCC
Q 002408 467 VFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK 546 (927)
Q Consensus 467 lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~ 546 (927)
+|.|++..+..|..|+..+.+.+.|.+++++++..
T Consensus 384 lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d--------------------------------------------- 418 (587)
T KOG1864|consen 384 LFQGILTNETRCLSCETITSRDEGFLDLSVAVEID--------------------------------------------- 418 (587)
T ss_pred hhcCeeeeeeeeccccccccccccccccceecccc---------------------------------------------
Confidence 99999999999999999999999999988887421
Q ss_pred CCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEE
Q 002408 547 IDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTY 626 (927)
Q Consensus 547 ~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~ 626 (927)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCC
Q 002408 627 LEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERIS 706 (927)
Q Consensus 627 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (927)
T Consensus 419 -------------------------------------------------------------------------------- 418 (587)
T KOG1864|consen 419 -------------------------------------------------------------------------------- 418 (587)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCC
Q 002408 707 SCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786 (927)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C 786 (927)
...++..||+.|..+|.|.++++++|
T Consensus 419 ------------------------------------------------------e~~si~~~l~~~~~~e~l~g~nky~c 444 (587)
T KOG1864|consen 419 ------------------------------------------------------ENTSITNLLKSFSSTETLSGENKYSC 444 (587)
T ss_pred ------------------------------------------------------ccccHHHHHHHhcchhhccCCCcccc
Confidence 12378999999999999999999999
Q ss_pred ccCcccceEEEEEEeeeCCCeEEEEEeceeeecc--cccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeec-c
Q 002408 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYG-G 863 (927)
Q Consensus 787 ~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G-~ 863 (927)
++|...|.|.|.+.+.++|.+|+||||||++.+. ...|+...|.||+ .|.+...+.....+...|+|+|||+|.| +
T Consensus 445 ~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~~~~~Y~L~avVvH~G~~ 523 (587)
T KOG1864|consen 445 ENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNNPDRKYDLVAVVVHLGST 523 (587)
T ss_pred cccCchhhHHHhccccCCcceeeeehhcccccccccccccccccccccc-ceeeccccccccCccceeeEEEEEEeccCC
Confidence 9999999999999999999999999999999853 3579999999997 7888666555443347999999999999 9
Q ss_pred CCCCeEEEEEEeCCCCCEEEECCceeeecCcCccc---CCceEEEEEEEec
Q 002408 864 LGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK---TSAAYVLFYRRVK 911 (927)
Q Consensus 864 l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~---s~~AYlLFY~R~~ 911 (927)
+..|||+||+|. .+-.|+.|||..|+.++++.|. ..+.|++||.+.-
T Consensus 524 p~~GHYia~~r~-~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 524 PNRGHYVAYVKS-LDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred CCCcceEEEEee-CCCCceecccccccccCcchhhhccCCCccceeeeEEe
Confidence 999999999996 2223999999999999988885 4667777776643
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.97 E-value=1.6e-30 Score=285.98 Aligned_cols=284 Identities=23% Similarity=0.391 Sum_probs=234.3
Q ss_pred cccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHHHHHHHHh
Q 002408 320 AGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRAFKGKLAR 398 (927)
Q Consensus 320 ~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~~~~~l~~ 398 (927)
.||.|.+++||+||+||+|+.+|++++.++.+. + -....+|+++|+-||.+|. .+....+.+..|.++++.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~------c~~e~cL~cELgfLf~ml~~~~~g~~cq~sNflr~l~~ 72 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E------CPKEFCLLCELGFLFDMLDSKAKGINCQASNFLRALSW 72 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C------CCccccHHHHHHHHHHHhhhhcCCCcChHHHHHHHHhc
Confidence 599999999999999999999999999999864 1 1125689999999999999 878889999999999988
Q ss_pred hCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEEEEEc
Q 002408 399 FAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVC 478 (927)
Q Consensus 399 ~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C 478 (927)
......-+.|+|.++|+.|||+.|+.++............ .......+.|.++|+.......+|
T Consensus 73 ~~~a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~i~~~f~~~~~~~~~c 136 (295)
T PF13423_consen 73 IPEAAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE----------------NSSSSPESSISQLFGTSFETTIRC 136 (295)
T ss_pred CHHHHhcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc----------------cccCCCcchHHHHhCcceeeeecc
Confidence 7655556679999999999999999998775532111000 011223466999999999999999
Q ss_pred CCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeC
Q 002408 479 PVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN 558 (927)
Q Consensus 479 ~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~ 558 (927)
..|+..+.+.+....+.|..|..
T Consensus 137 ~~c~~~~~~~~~~~~~~l~yp~~--------------------------------------------------------- 159 (295)
T PF13423_consen 137 TSCGHESVKESSTLVLDLPYPPS--------------------------------------------------------- 159 (295)
T ss_pred cccCCeEEeecceeeeeccCCCC---------------------------------------------------------
Confidence 99999988887766666655421
Q ss_pred CeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHHH
Q 002408 559 HQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (927)
Q Consensus 559 ~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~ 638 (927)
T Consensus 160 -------------------------------------------------------------------------------- 159 (295)
T PF13423_consen 160 -------------------------------------------------------------------------------- 159 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCCCC
Q 002408 639 IAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILK 718 (927)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (927)
T Consensus 160 -------------------------------------------------------------------------------- 159 (295)
T PF13423_consen 160 -------------------------------------------------------------------------------- 159 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEE
Q 002408 719 PGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKK 798 (927)
Q Consensus 719 ~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~ 798 (927)
...+++.++|+.++..|.... ..|++|++.+.+..+
T Consensus 160 -----------------------------------------~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~ 195 (295)
T PF13423_consen 160 -----------------------------------------NSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQR 195 (295)
T ss_pred -----------------------------------------CccchHHHHHHHHHhhccccc---ccccccccccceeee
Confidence 123488999999999998765 899999999999999
Q ss_pred EEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccC-------CCCceEEEEEEEEEeec-cCCCCeEE
Q 002408 799 LDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSK-------DGESYVYDLFAISNHYG-GLGGGHYT 870 (927)
Q Consensus 799 ~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~-------~~~~~~YdL~AVi~H~G-~l~~GHYt 870 (927)
..|.++|+||.|.++|......+..|....+.+|. .+++..++..+ .....+|+|.|+|+|.| +..+|||+
T Consensus 196 r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~-~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlV 274 (295)
T PF13423_consen 196 RTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPP-SINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLV 274 (295)
T ss_pred eeccCCCcEEEEEccCCCcccccccccCCceecce-eeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceE
Confidence 99999999999999999998666889999999995 69999888654 23567999999999999 69999999
Q ss_pred EEEEeCC--CCCEEEECCcee
Q 002408 871 AYAKLID--ENRWYHFDDSHV 889 (927)
Q Consensus 871 Ay~k~~~--~~~Wy~fnDs~V 889 (927)
||+|... +.+||.|||-.|
T Consensus 275 s~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 275 SLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred EEEEcCCCCCCcEEEECcEeC
Confidence 9999753 379999999765
No 36
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.96 E-value=1.3e-28 Score=258.50 Aligned_cols=305 Identities=29% Similarity=0.451 Sum_probs=241.8
Q ss_pred ccCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC--CCccCh
Q 002408 312 KKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--RAAVAP 389 (927)
Q Consensus 312 ~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--~~~i~p 389 (927)
.....+|.+||.|+-++=|.|++||+|+|.+++|+||+.. .|+....+.+...|+.|++++|+.. ...++|
T Consensus 127 ~~tYLpG~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~-------~n~~d~~~~lv~rl~~l~rklw~~r~fk~hvSp 199 (442)
T KOG2026|consen 127 GSTYLPGFVGLNNIKANDYANAVLQALSHVVPLRNYFLLE-------ENYFDNLTELVQRLGELIRKLWNPRNFKGHVSP 199 (442)
T ss_pred CCcceeeeeccchhhhHHHHHHHHHHHhccchhhhhhccc-------ccccchhHHHHHHHHHHHHHhcChhhhcccCCH
Confidence 4567899999999999999999999999999999999763 2344557889999999999999976 578999
Q ss_pred HHHHHHHHhh-CCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccce
Q 002408 390 RAFKGKLARF-APQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVF 468 (927)
Q Consensus 390 ~~~~~~l~~~-~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF 468 (927)
.+|++++... ...|..++|-|+-|||.+||+.||.+++..++ ..|||+..|
T Consensus 200 he~lqaV~~~s~k~f~i~~q~DpveFlswllntlhs~l~~~k~----------------------------~~SIi~~~f 251 (442)
T KOG2026|consen 200 HEFLQAVMKLSKKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK----------------------------ASSIIHKSF 251 (442)
T ss_pred HHHHHHHHHHhhhheecCCCCCHHHHHHHHHHHHHHHhCCCCC----------------------------chhHhhHhh
Confidence 9999999654 45799999999999999999999999876542 258999999
Q ss_pred eEEEEEEEEcCC----CCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcC
Q 002408 469 QGQYKSTLVCPV----CSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACC 544 (927)
Q Consensus 469 ~G~~~s~i~C~~----C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~ 544 (927)
+|.++....=.. -....+..-||++|+|+||....
T Consensus 252 qG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~pl----------------------------------------- 290 (442)
T KOG2026|consen 252 QGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPL----------------------------------------- 290 (442)
T ss_pred cceEEeeeeccccccccccceEEEEeeEEEEecCCCCCc-----------------------------------------
Confidence 999876554433 22344567799999999996531
Q ss_pred CCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEE
Q 002408 545 LKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLV 624 (927)
Q Consensus 545 ~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~ 624 (927)
|.|..
T Consensus 291 --------------------fkD~~------------------------------------------------------- 295 (442)
T KOG2026|consen 291 --------------------FKDVM------------------------------------------------------- 295 (442)
T ss_pred --------------------ccchh-------------------------------------------------------
Confidence 00000
Q ss_pred EEecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCC
Q 002408 625 TYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDER 704 (927)
Q Consensus 625 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (927)
+..
T Consensus 296 -------------------------------------e~n---------------------------------------- 298 (442)
T KOG2026|consen 296 -------------------------------------EKN---------------------------------------- 298 (442)
T ss_pred -------------------------------------hhc----------------------------------------
Confidence 000
Q ss_pred CCccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCC
Q 002408 705 ISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMW 784 (927)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w 784 (927)
. -+.+.|.+.|+.|..+..-+-
T Consensus 299 ---------------------------------------i---------------iPQV~l~~lL~Kf~g~t~~e~---- 320 (442)
T KOG2026|consen 299 ---------------------------------------I---------------IPQVALFDLLKKFDGETVTEV---- 320 (442)
T ss_pred ---------------------------------------c---------------cccchHHHHHHHhcCceeeee----
Confidence 0 123577888888765433210
Q ss_pred CCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCccccccccc---CCCCceEEEEEEEEEee
Q 002408 785 YCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKS---KDGESYVYDLFAISNHY 861 (927)
Q Consensus 785 ~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~---~~~~~~~YdL~AVi~H~ 861 (927)
.....| +++.+.++|++||+|+|||.-+++..+|+.|.|+||+..+|+.+.... .+..-..|+|.|-+.|-
T Consensus 321 -----~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~ 394 (442)
T KOG2026|consen 321 -----VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE 394 (442)
T ss_pred -----cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC
Confidence 112234 889999999999999999999999999999999999888888765542 22233678998888886
Q ss_pred ccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEe
Q 002408 862 GGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRV 910 (927)
Q Consensus 862 G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~ 910 (927)
-.-|||...+++..+++||..+|-+|++..++.|.-+++||-.|++.
T Consensus 395 --~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 395 --DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred --cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 77899999999999999999999999999999999999999888875
No 37
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-29 Score=262.61 Aligned_cols=143 Identities=27% Similarity=0.425 Sum_probs=112.9
Q ss_pred CHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeee-cccccccceeeeccCCCccccccc
Q 002408 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYM 842 (927)
Q Consensus 764 sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~ 842 (927)
++.++|..|...|.+.+ |.-+ -+..+.|.+++.|-++|++|++|||||.|. .+..+|+...++||- .|.+..-+
T Consensus 266 sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~-~l~i~~~~ 340 (420)
T KOG1871|consen 266 SVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPW-TLKISKNC 340 (420)
T ss_pred CHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccc-eeeechhh
Confidence 34445555555555543 2222 456678999999999999999999999998 567789999999994 78776544
Q ss_pred ccCC------CCceEEEEEEEEEeec-cCCCCeEEEEEEeCCCCCEEEECCceeeecCcCccc----CCceEEEEEEEec
Q 002408 843 KSKD------GESYVYDLFAISNHYG-GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIK----TSAAYVLFYRRVK 911 (927)
Q Consensus 843 ~~~~------~~~~~YdL~AVi~H~G-~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~----s~~AYlLFY~R~~ 911 (927)
.... .....|+|.||+.|.| +..+|||++-+.+..-+.|+.+||..|..+..++|. +..||+|+|+|.+
T Consensus 341 ~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 341 FSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred hccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 4211 1234699999999999 899999999999888899999999999999988886 3579999999874
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-27 Score=255.04 Aligned_cols=151 Identities=25% Similarity=0.312 Sum_probs=115.1
Q ss_pred CCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHH
Q 002408 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKL 396 (927)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l 396 (927)
+-++||.|+|||||||+.+|||-..|+++.-+... ...............+..+++.+|..|..+ .++.|..+...+
T Consensus 103 ~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~-~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~--~~v~pi~llqtl 179 (473)
T KOG1872|consen 103 PLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLY-KRKRGRGDTWERRRRISIETRTCFRPLCEK--GAVAPINLLQTL 179 (473)
T ss_pred cCCccccchhHHHHhhhhhhhhhcCccCcchhhcc-chhccCCchhhhhhhHHHHHHHHHHhhhcc--CCcchHHHHHHH
Confidence 34679999999999999999999999999887553 222222222333567899999999999876 899999999999
Q ss_pred HhhCCCCCC------CCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeE
Q 002408 397 ARFAPQFSG------YNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQG 470 (927)
Q Consensus 397 ~~~~~~f~~------~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G 470 (927)
.+..|+|.- +.||||.|+...++-.+++-+......+ ...+.+...|.+
T Consensus 180 ~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~-------------------------~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 180 SSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP-------------------------CLEAEAAAGFGA 234 (473)
T ss_pred HHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-------------------------chhHHHHHhhcc
Confidence 999999875 8999999999999999997654322111 234558889999
Q ss_pred EEEEEEEcCCCCCeeee--ecCCeeEe
Q 002408 471 QYKSTLVCPVCSKVSIT--FDPFMYLT 495 (927)
Q Consensus 471 ~~~s~i~C~~C~~~s~~--~e~f~~Ls 495 (927)
++..+..|..-...... .|.|..|+
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~ 261 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLK 261 (473)
T ss_pred ccccceeeccCcccccccccccccccc
Confidence 99999999886654433 44444433
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.84 E-value=2.6e-21 Score=176.89 Aligned_cols=96 Identities=41% Similarity=0.945 Sum_probs=63.1
Q ss_pred CCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCCCCCC---CCCcchhccccCCC
Q 002408 43 GNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSS---EGDDLEVRRNLEEG 119 (927)
Q Consensus 43 g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~---~~~~~~Lk~~l~e~ 119 (927)
|++|||||++||++|+.|+.+....... ......+||||||++|++...... ......||++|.++
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~-----------~~~~~~~pGpIdN~~L~~~~~~~~~~~~~~~~~Lk~~l~~~ 69 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNES-----------DPDSSPRPGPIDNSDLLDEDNSQLQFPPPENYRLKPNLQEG 69 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTT-----------TT-GGG---SB-GGGGECCTTT---------TEE-SS--CT
T ss_pred CCEEEEECHHHHHHHHHHhCCCCccccc-----------ccccCCCCCCEeCHHHhCCCCcccccchhhhhhccccccCC
Confidence 8999999999999999999887652210 011135699999999998643200 01235899999999
Q ss_pred CcEEEeCHHHHHHHHHHhCCCCCcceEEee
Q 002408 120 QDYVLVPQQVWEKLFCWYKGGPALPRKMIS 149 (927)
Q Consensus 120 ~Df~~Vp~~~W~~l~~wYG~~~~i~R~vi~ 149 (927)
.||++||+++|++|.+||||||+|+|.||.
T Consensus 70 ~Dy~~v~~~~W~~l~~~Ygggp~I~R~vi~ 99 (99)
T PF06337_consen 70 VDYELVPEEVWDYLHSWYGGGPEIKRQVIN 99 (99)
T ss_dssp TTEEEEEHHHHHHHHHHH-T----EEEEE-
T ss_pred CCEEEECHHHHHHHHHHcCCCCcEEEEeeC
Confidence 999999999999999999999999999983
No 40
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.80 E-value=1.2e-19 Score=161.05 Aligned_cols=83 Identities=48% Similarity=1.125 Sum_probs=73.3
Q ss_pred CCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhccCCCCCCCCCcchhccccCCCC
Q 002408 41 KEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120 (927)
Q Consensus 41 ~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~~~~~~~~~~~~~Lk~~l~e~~ 120 (927)
++|++||+||++||++|++|+.... ...||||||++|+.... +..||+++.++.
T Consensus 2 ~~g~~~yiIs~~W~~~~~~~~~~~~--------------------~~~pGpIdN~~l~~~~~------~~~lk~~l~~~~ 55 (86)
T smart00695 2 REGDTWYLISTRWYRQWADFVEGKD--------------------GKDPGPIDNSGILCSHG------GPRLKEHLVEGE 55 (86)
T ss_pred CCCCEEEEEeHHHHHHHHHHhCCCC--------------------CCCCCCCCcHHhcCCCC------CcccccccccCC
Confidence 6899999999999999999987422 26899999999997421 358999999999
Q ss_pred cEEEeCHHHHHHHHHHhCCCC-CcceEEee
Q 002408 121 DYVLVPQQVWEKLFCWYKGGP-ALPRKMIS 149 (927)
Q Consensus 121 Df~~Vp~~~W~~l~~wYG~~~-~i~R~vi~ 149 (927)
||++||+++|++|.+|||||| +|.|.||.
T Consensus 56 dy~~V~~~vW~~l~~~YGggp~~i~R~~i~ 85 (86)
T smart00695 56 DYVLIPEELWNKLVSWYGGGPGPIPRKVVC 85 (86)
T ss_pred CEEEeCHHHHHHHHHHHCCCCccceEEeec
Confidence 999999999999999999999 59999985
No 41
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.56 E-value=3.2e-14 Score=164.17 Aligned_cols=123 Identities=23% Similarity=0.363 Sum_probs=96.6
Q ss_pred CCCccCcccceEEEEEEeeeCCCeEEEEEeceeee--cccc--cccceeeeccCCCcccccccc----------cC----
Q 002408 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS--RYLK--NKLDTFVNFPILNLDLSKYMK----------SK---- 845 (927)
Q Consensus 784 w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~--~~~~--~Ki~~~V~FPl~~LDls~~~~----------~~---- 845 (927)
-.|+.|++++..+.+..+-.+|++|.|...-+... .+++ .|.-..|.+| +.+-|..--. ..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP-~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLP-EWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccc-hheeEEEecccceeeeeeccccCCCC
Confidence 57999999999999999999999999998887654 3333 4556678888 4565542110 00
Q ss_pred ----CCCceEEEEEEEEEeec-cCCCCeEEEEEEe--------CCCCCEEEECCceeeecCcCcccC-----CceEEEEE
Q 002408 846 ----DGESYVYDLFAISNHYG-GLGGGHYTAYAKL--------IDENRWYHFDDSHVSPVSEGDIKT-----SAAYVLFY 907 (927)
Q Consensus 846 ----~~~~~~YdL~AVi~H~G-~l~~GHYtAy~k~--------~~~~~Wy~fnDs~V~~v~~~~V~s-----~~AYlLFY 907 (927)
+..-.+|+|.|+|.|.| +-+.+|.|+++|. +.+.+||.|||-.|+++++++.+. +-+-||||
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 11237899999999999 7799999999985 245799999999999999888764 56899999
No 42
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=98.63 E-value=8.8e-08 Score=83.00 Aligned_cols=78 Identities=27% Similarity=0.365 Sum_probs=58.0
Q ss_pred EEEEeccC---CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 165 LKLIDSRD---NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 165 l~i~~~~~---~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
|+++...+ ++..+..+|+.+||..+.+++|++|++ ++.+|||+++..+.. +++.+...||+|+.|..+|.|++|.
T Consensus 2 ~kLC~~~~~~l~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~ 79 (88)
T PF14836_consen 2 LKLCVPSNVDLQSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEE 79 (88)
T ss_dssp EEEEETTE--CCEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE
T ss_pred ceeccCCCcccccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEe
Confidence 44444433 345678999999999999999999999 778999999877766 7888888999999999999999999
Q ss_pred Eec
Q 002408 242 QVD 244 (927)
Q Consensus 242 ~~~ 244 (927)
++.
T Consensus 80 rn~ 82 (88)
T PF14836_consen 80 RNE 82 (88)
T ss_dssp --T
T ss_pred ecc
Confidence 864
No 43
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=97.36 E-value=0.0027 Score=66.34 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=82.5
Q ss_pred CeeEeecCCCC---ceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCC--CCceEEEEEeCCeeEEee
Q 002408 491 FMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI--DEGLLLAEVYNHQIFRFF 565 (927)
Q Consensus 491 f~~LsL~ip~~---~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~--~~~l~~~e~~~~~~~~~~ 565 (927)
+.+--|+||.. +.+.+.++.+..... .--.+.+.++|++++.||++++++.+++.. ...+.+.+++++++++++
T Consensus 3 l~YevL~i~l~ElE~kk~~kv~w~~~~~~-~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~ 81 (213)
T PF14533_consen 3 LYYEVLDIPLKELENKKQFKVTWLNDGLK-EEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKIL 81 (213)
T ss_dssp EEEEE-SS-HHHHHSB--EEEEEE-TTS--EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE
T ss_pred eEEEecCCCHHHHhCceEEEEEEECCCCc-ceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeec
Confidence 44555666653 456677777643322 223688999999999999999999998854 368999999999999999
Q ss_pred cCCcccccccCCCCeEEEEEecCCC-----C--CceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCHHHHH
Q 002408 566 ENPAELISSIKDDEHIVAYRFDRKQ-----G--GKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADID 638 (927)
Q Consensus 566 ~d~~~~~~~i~~~d~i~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~ 638 (927)
. +...+..|.+...+.+-++|... + +...++++|-..+. ...||.||+..+.. .-+..++.
T Consensus 82 ~-~d~~i~~l~~~~~~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~----------~~~hGiPF~f~v~~-gE~f~~tK 149 (213)
T PF14533_consen 82 S-EDEPISSLNDYITLRIEEIPEEELNLDDESEGEKLIPVFHFHKDP----------SRTHGIPFLFVVKP-GETFSDTK 149 (213)
T ss_dssp --TTSBGGGS--TTEEEEEE--GGGSS--TT--TEEEEEEEEESSST----------T-EEEEEEEEEEET-T--HHHHH
T ss_pred C-CCCchhhccCcceeeeecCChHHhhcccccccceEEEEEEEecCc----------cccCCCCEEEEeeC-CCcHHHHH
Confidence 8 56777778655567777777653 1 23557777654321 27899999999873 33555555
Q ss_pred HHHHHhc
Q 002408 639 IAVSKLL 645 (927)
Q Consensus 639 ~~~~~~~ 645 (927)
..+.+++
T Consensus 150 ~Rl~~rl 156 (213)
T PF14533_consen 150 ERLQKRL 156 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 44
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.18 E-value=0.003 Score=65.39 Aligned_cols=82 Identities=18% Similarity=0.380 Sum_probs=58.7
Q ss_pred CCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeecc
Q 002408 784 WYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGG 863 (927)
Q Consensus 784 w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~ 863 (927)
--|.+|+.+. ..++|-+.++|+|+++|+- .+-..+.-..-+|-. +...|...+||--.-.
T Consensus 171 ~pCn~C~~ks-Q~rkMvlekv~~vfmLHFV-----eGLP~ndl~~ysF~f--------------eg~~Y~Vt~VIQY~~~ 230 (275)
T PF15499_consen 171 GPCNSCNSKS-QRRKMVLEKVPPVFMLHFV-----EGLPHNDLQHYSFHF--------------EGCLYQVTSVIQYQAN 230 (275)
T ss_pred CCCcccCChH-HhHhhhhhcCchhhhhhhh-----ccCCccCCCccceee--------------cCeeEEEEEEEEEecc
Confidence 4699998764 4678999999999999963 222221111222222 3467999999976654
Q ss_pred CCCCeEEEEEEeCCCCCEEEECCce
Q 002408 864 LGGGHYTAYAKLIDENRWYHFDDSH 888 (927)
Q Consensus 864 l~~GHYtAy~k~~~~~~Wy~fnDs~ 888 (927)
.-|+++++++ .+|.|.+|||-.
T Consensus 231 --~~HFvtWi~~-~dGsWLecDDLk 252 (275)
T PF15499_consen 231 --LNHFVTWIRD-SDGSWLECDDLK 252 (275)
T ss_pred --CceeEEEEEc-CCCCeEeeccCC
Confidence 5799999998 788899999976
No 45
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.001 Score=78.78 Aligned_cols=105 Identities=21% Similarity=0.245 Sum_probs=59.3
Q ss_pred cccCCCcchHHHHHHHHhCChHHHHHHHhcC---C-------cccccCCCCCchhHHHHHHHHHHHHHhcCCCCcc--Ch
Q 002408 322 LQNLGNTCFMNSALQCLVHTPDLAQYFLGDY---S-------DEINTENPLGMHGELALAFGDLLRKLWSSGRAAV--AP 389 (927)
Q Consensus 322 L~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~---~-------~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i--~p 389 (927)
|.|.|||||.||+||||..+|+|+--+...+ + ...+.....-...+...+....+... ......+ +-
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~ 112 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKN-SSSNESFNLSV 112 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhcc-CCccccccchH
Confidence 9999999999999999999999998776541 1 11111111101111111111111111 1111122 22
Q ss_pred HHHHHHH---HhhCCCCCCCCCCcHHHHHHHHHHHHHHHhh
Q 002408 390 RAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLN 427 (927)
Q Consensus 390 ~~~~~~l---~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~ 427 (927)
..+...+ .+....|....|+|||+|+.-|+-.+..-+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~~ 153 (587)
T KOG1864|consen 113 TQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVMG 153 (587)
T ss_pred HHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhcc
Confidence 2333333 3444568888999999999998888776543
No 46
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=92.67 E-value=0.6 Score=41.26 Aligned_cols=66 Identities=24% Similarity=0.238 Sum_probs=50.6
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCc-ccccCCCCccCChhhhhccCCceEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQ-RSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~-~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.....++...|+.+|+.++-..+|+++...||.-+.... .....+.+..++|..+++.++..|.|.
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 567889999999999999999999999998887663322 222345667899999999999877765
No 47
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=92.50 E-value=0.48 Score=40.15 Aligned_cols=62 Identities=10% Similarity=0.072 Sum_probs=49.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
......+.++..+|+.+|++++....+++.+..||| |. + ..+.+...+|+++.+..+..+.+
T Consensus 8 ~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li-~~----G-k~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 8 SETTFSLDVDPDLELENFKALCEAESGIPASQQQLI-YN----G-RELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEE-EC----C-eEccCCcccHHHcCCCCCCEEEE
Confidence 344567889999999999999999999999999998 32 2 33455457899999998877665
No 48
>PTZ00044 ubiquitin; Provisional
Probab=91.30 E-value=1.1 Score=38.41 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=51.0
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++...|+.+|+.++....+++++..||| |.+ ..+. .+.+|.++++..+..+.+-++
T Consensus 9 ~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g-----~~L~-d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 9 TGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSG-----KQMS-DDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC-----EEcc-CCCcHHHcCCCCCCEEEEEEE
Confidence 344567899999999999999999999999999999 533 2344 467899999998877766544
No 49
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=90.33 E-value=1.3 Score=38.95 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=51.9
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 176 ~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
....++...|+.+|++++-..+|+++...||.-+.........+.+.+++|..+++.++..|.|.
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 45678999999999999999999999999997665543222345667889999999999888765
No 50
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=90.16 E-value=1.1 Score=38.11 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=48.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
......+.++..+|+.+|+++++...+++++..||+ |.+ ..+.+ +.+|.++++..+..+.+
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~-~~G-----~~L~d-~~~L~~~~i~~~~~l~l 69 (74)
T cd01807 9 QGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLL-FKG-----KALAD-DKRLSDYSIGPNAKLNL 69 (74)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECC-----EECCC-CCCHHHCCCCCCCEEEE
Confidence 344557889999999999999999999999999987 432 23343 68999999998876644
No 51
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=89.79 E-value=2.6 Score=37.26 Aligned_cols=63 Identities=17% Similarity=0.399 Sum_probs=49.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
......+.+.+.+++..|++..|+..+++++.+|++ |.+ ..+. .+.|+.++.+..+..|-+-+
T Consensus 20 ~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~-f~G-----~~L~-~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 20 DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFL-FDG-----QRIR-DNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEE-ECC-----eECC-CCCCHHHcCCCCCCEEEEEE
Confidence 345567899999999999999999999999999988 322 1222 36899999999887665443
No 52
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=89.79 E-value=2 Score=36.59 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=49.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++....+++++..||+ |.+ ..+. .+++|.++++..+..+-+-++
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g-----~~L~-d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSG-----KQMN-DDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECC-----eEcc-CCCCHHHcCCCCCCEEEEEEE
Confidence 34456788999999999999999999999999998 542 2233 368999999998877755543
No 53
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=88.44 E-value=1.7 Score=36.41 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=48.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
......+.++...|+.+|++++....+++++..||+ +. + ..+. .+++|.++++..+..+.+.
T Consensus 8 ~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g-~~l~-d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 8 GGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLI-FK----G-KERD-DAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEe-eC----C-cccC-ccCcHHHcCCCCCCEEEEe
Confidence 344567889999999999999999999999988988 32 2 2233 3689999999888777653
No 54
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=88.33 E-value=2.5 Score=35.94 Aligned_cols=63 Identities=16% Similarity=0.305 Sum_probs=49.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++.+..+++++..||| |.+ ..+.+ +.+|.++++..+..+-+-++
T Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~-~~g-----~~L~d-~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred CCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEE-ECC-----EECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 34456888999999999999999999999999999 532 23333 57999999988877766554
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=87.82 E-value=1.8 Score=37.18 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=46.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCC-ceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD-QDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~-q~ilv 239 (927)
......+.++...|+.+|+.++....+++++.-|| |.+. .+.+.+++|.++++..+ ..+.+
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL--~~G~-----~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW--VIGQ-----RLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE--EcCC-----eeCCCcCCHHHcCCCCCCCEEEE
Confidence 34456788899999999999999999999998898 4332 23445689999999844 55544
No 56
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=87.45 E-value=2.3 Score=35.69 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=47.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
......+.+...+|+.+|++.+....+++.++.||+ |.+ ..+.+ +.+|.++++..+..+-
T Consensus 7 ~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li-~~G-----~~L~d-~~~l~~~~i~~~stl~ 66 (70)
T cd01798 7 TGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVI-FAG-----KELRN-TTTIQECDLGQQSILH 66 (70)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEE-ECC-----eECCC-CCcHHHcCCCCCCEEE
Confidence 344566788999999999999999999999999997 432 23443 6899999998776653
No 57
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=86.76 E-value=2.8 Score=35.37 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=44.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
...+.+....|+.+|++.+.+..+++.+..||+ |. + ..|.+ +++|.++++..+..+-+
T Consensus 11 ~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li-~~----G-k~L~d-~~tL~~~~i~~~stl~l 68 (71)
T cd01808 11 KEEIEIAEDASVKDFKEAVSKKFKANQEQLVLI-FA----G-KILKD-TDTLTQHNIKDGLTVHL 68 (71)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCHHHEEEE-EC----C-eEcCC-CCcHHHcCCCCCCEEEE
Confidence 357888999999999999999999988888886 32 2 23343 57999999988766543
No 58
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=86.69 E-value=4 Score=34.76 Aligned_cols=64 Identities=8% Similarity=0.247 Sum_probs=49.7
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++..+|+.+|++++....+++.+..||+ |. + ..|.+ +.+|.++++..+..+.+-++
T Consensus 7 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~----G-~~L~D-~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 7 KGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLS-FE----G-RPMED-EHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-EC----C-EECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 444567888999999999999999999999988887 32 2 23343 58999999998877766544
No 59
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=86.09 E-value=3 Score=35.22 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=46.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
......+.++..+|+.++++++....+++++.-||| |.+ ..+++ +.+|.++++..+..|
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li-~~G-----~~L~D-~~~l~~~~i~~~~tv 65 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF-FSG-----KLLTD-KTRLQETKIQKDYVV 65 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEE-ECC-----eECCC-CCCHHHcCCCCCCEE
Confidence 344567888999999999999999999999999998 432 23443 689999988866554
No 60
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=85.41 E-value=5.8 Score=36.31 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++..+|+.+|++++....+++.++.||| |.+ ..+. .+.+|.++++..+..|-+-++
T Consensus 36 ~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 36 TGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLI-WNN-----MELE-DEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 344567889999999999999999999999999998 432 2333 358999999998877766544
No 61
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=84.61 E-value=5.4 Score=33.95 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=47.0
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
...++.+...+|+.+++.++....+++++..||+ |.+ ..+.+ +.+|.++++..+..+-+=
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li-~~G-----k~L~D-~~tL~~~~i~~~~tl~l~ 68 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLL-LAG-----VPLED-DATLGQCGVEELCTLEVA 68 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEE-ECC-----eECCC-CCCHHHcCCCCCCEEEEE
Confidence 3467888999999999999999999999999998 322 23443 589999999887666443
No 62
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=84.18 E-value=3.2 Score=34.55 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=47.4
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
...+.++..+|+.+|++++....+++++..||. |. + ..| +.+.+|.++++..+..|.+-
T Consensus 7 ~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~-~~----G-~~L-~d~~tL~~~~i~~~~~I~l~ 65 (69)
T PF00240_consen 7 TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLI-YN----G-KEL-DDDKTLSDYGIKDGSTIHLV 65 (69)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEE-ET----T-EEE-STTSBTGGGTTSTTEEEEEE
T ss_pred EEEEEECCCCCHHHhhhhcccccccccccceee-ee----e-ecc-cCcCcHHHcCCCCCCEEEEE
Confidence 467888999999999999999999999998876 22 2 333 45789999999988766554
No 63
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=83.07 E-value=6.6 Score=33.48 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCC--CCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l--~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++.+....++ ++++.||+ |. + ..+.+ +.+|.++++..+..+.+-++
T Consensus 10 g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~-~~----G-~~L~d-~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 10 QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI-YS----G-KILKD-DTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE-EC----C-EEccC-CCCHHHcCCCCCCEEEEEEe
Confidence 345578889999999999999999998 88888887 32 2 33443 58999999998877766543
No 64
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=82.33 E-value=0.71 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=16.2
Q ss_pred CCccccccCCCcchHHHHHHHHhC
Q 002408 317 GGLAGLQNLGNTCFMNSALQCLVH 340 (927)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~ 340 (927)
-.++|+.|.+|||++||++|.+..
T Consensus 31 ~eft~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 31 MEFTGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp -EEE----SSSTHHHHHHHHHHHH
T ss_pred eEEecCCCCCCChHHHHHHHHHHH
Confidence 346799999999999999998754
No 65
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=82.23 E-value=5.8 Score=33.18 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=47.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
......+.++...|+.+|++++....+++++..||+ |. + .++.+ +.+|.++++..+..+.
T Consensus 9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~----g-~~L~d-~~~L~~~~i~~~~~l~ 68 (72)
T cd01809 9 DSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLI-YS----G-RVLKD-DETLSEYKVEDGHTIH 68 (72)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-EECCC-cCcHHHCCCCCCCEEE
Confidence 344567888999999999999999999999989998 42 2 34443 6899999998877653
No 66
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=82.14 E-value=3.9 Score=35.56 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.......+.++..+|+.+|++++.+.++++.....|+ .+.+....+..+.+++|.++++.-|..+.+.
T Consensus 11 S~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~--~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 11 SKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS--KDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---B--SSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred CCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE--ecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 3444567889999999999999999999998876654 2333332444456789999999988777653
No 67
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=81.65 E-value=8 Score=33.35 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.....+.++..+|+.+|++++.+.++++++..||- | . + ..+.+ + +|.++++.++..+.+
T Consensus 11 G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~-~-~---G-k~L~d-~-~L~~~gi~~~~~i~l 69 (78)
T cd01804 11 GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALL-H-R---E-TRLSS-G-KLQDLGLGDGSKLTL 69 (78)
T ss_pred CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEE-E-C---C-cCCCC-C-cHHHcCCCCCCEEEE
Confidence 34467888999999999999999999988877764 2 2 2 34454 3 899999998876644
No 68
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=81.52 E-value=7.2 Score=33.68 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=47.2
Q ss_pred EE-EeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 177 VI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 177 ~~-~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
.+ .+....|+.+|++++....+++.++-||| |. + ..|. .+.+|.++++..+..|.+-++.
T Consensus 15 ~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi-~~----G-k~L~-D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 15 TVDSLSRLTKVEELREKIQELFNVEPECQRLF-YR----G-KQME-DGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEE-eC----C-EECC-CCCCHHHcCCCCCCEEEEEEec
Confidence 45 36788999999999999999999999998 32 2 2333 3689999999998887776553
No 69
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=81.52 E-value=9.5 Score=32.50 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
+....+.++...|+.+|++++-+.++++++..||- |. + .++.+ +++|.++++..+..|.+
T Consensus 11 Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi-~~----G-k~L~D-~~tL~~ygi~~~stv~l 70 (73)
T cd01791 11 GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLK-KW----Y-TIFKD-HISLGDYEIHDGMNLEL 70 (73)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEE-eC----C-cCCCC-CCCHHHcCCCCCCEEEE
Confidence 34556788999999999999999999999988885 32 2 34444 57999999988766644
No 70
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=81.40 E-value=5.5 Score=33.51 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=45.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCC-cceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQ-EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~-~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
+.....+.+.+..++..|++..|+..+++. +.+|++ |.+ ..+ +.++|+.++.+..+..|
T Consensus 9 ~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~-fdG-----~~L-~~~~T~~~~~ied~d~I 68 (72)
T PF11976_consen 9 DGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI-FDG-----KRL-DPNDTPEDLGIEDGDTI 68 (72)
T ss_dssp TSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE-ETT-----EEE--TTSCHHHHT-STTEEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE-ECC-----EEc-CCCCCHHHCCCCCCCEE
Confidence 334567889999999999999999999999 889987 332 122 34789999999987543
No 71
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=80.02 E-value=11 Score=32.60 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=48.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.+....|+.+|++.+.+.++++.++.||-..+. + ..+.+ +.+|.++++..+..+.+=++
T Consensus 12 G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~---G-~~L~D-~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 12 GNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDS---R-EVLQD-GVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccC---C-CCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence 344556788999999999999999999998888842222 2 23443 57999999988877755443
No 72
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=78.09 E-value=9.1 Score=32.75 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=49.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
...+.++..+|+.+|++++-...+++++..||+ |.+ ..+.+ +.+|.++++..+..+.+-++.
T Consensus 9 ~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~d-~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 9 MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQ-YEG-----IFIKD-SNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC-----EEcCC-CCcHHHcCCCCCCEEEEEEec
Confidence 346788899999999999999999999999998 432 23343 589999999998877665553
No 73
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=77.85 E-value=2.2 Score=42.46 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=32.9
Q ss_pred Eeec--cCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCC
Q 002408 859 NHYG--GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913 (927)
Q Consensus 859 ~H~G--~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~ 913 (927)
.|.| --|.||-++|++ ..+.||.+||..+.+-+++- +=+|.|..-+-+
T Consensus 129 f~agi~~~g~~Havfa~~--ts~gWy~iDDe~~y~~tPdp-----~~VLvfvp~D~E 178 (193)
T PF05408_consen 129 FHAGIFLKGQEHAVFACV--TSDGWYAIDDEDFYPWTPDP-----SDVLVFVPYDQE 178 (193)
T ss_dssp EEEEEEEESTTEEEEEEE--ETTCEEEEETTEEEE----G-----GGEEEEEESSSS
T ss_pred hhhHheecCCcceEEEEE--eeCcEEEecCCeeeeCCCCh-----hheEEEcccCcc
Confidence 4666 456899999999 68899999999999888532 224666665543
No 74
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=76.30 E-value=1.3 Score=55.86 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=94.1
Q ss_pred CCCHHHHHHHhhCCCccCCCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccc
Q 002408 762 AISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKY 841 (927)
Q Consensus 762 ~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~ 841 (927)
...+.+|+..|+....+..+...-|+.|.....-. ...-. .+++|+..|+........+....+.+++.++.+-..
T Consensus 481 ~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~ 556 (842)
T KOG1870|consen 481 VEILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQG--SIYAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVS 556 (842)
T ss_pred ceeccchhhhhhccCccccccccCCcceEEeeccc--ccccc--cceEEEEEeeccccccccCcccCCCccccCCcceee
Confidence 44678899999998876666777777776543321 11111 168888888876554555677889999989888776
Q ss_pred cccCCCCceEEEEEEEEEeeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEE
Q 002408 842 MKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYR 908 (927)
Q Consensus 842 ~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~ 908 (927)
+... .....++|..+++|.++...||+ ..+.|+..++..+..+. ......+.++++
T Consensus 557 ~~~~-~~~t~~~l~~~~~~~~s~~~~~~-------~~~v~~~~~~~~~~~~~---e~~~~s~~~~~~ 612 (842)
T KOG1870|consen 557 VLSG-AQSTEEDLLSVICHRTSRYSREP-------PLNVGYGVDDQSLKEVS---EQSAESSSSVSR 612 (842)
T ss_pred ccCC-CcccccchhhHHhhcccccCCcC-------ccccccCCCcccccccc---cccccccccccC
Confidence 6653 25578999999999998888887 57889999999988776 233445555554
No 75
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=74.79 E-value=9.3 Score=30.85 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=41.6
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCC
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 234 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~ 234 (927)
....+.++...|+.+|++++...++++++..||+ +.+ ..+.+ +++|.++++..+
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~-~~g-----~~L~d-~~tL~~~~i~~~ 63 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLI-YKG-----KVLED-DRTLADYNIQDG 63 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECC-----EECCC-CCCHHHcCCcCC
Confidence 3567889999999999999999999999888876 322 23443 588988887653
No 76
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=74.29 E-value=11 Score=33.76 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=50.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
...+.++..+|+.+|+..+-..|++++.+=+||-. + ..+.|..+||.++.+..+-.+++=+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d-----G-~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSID-----G-KILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeec-----C-ceeccCCccHHhcCCCCCCEEEEEe
Confidence 46778999999999999999999999998888844 2 1445678999999999988776543
No 77
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=73.67 E-value=14 Score=31.54 Aligned_cols=64 Identities=14% Similarity=0.286 Sum_probs=47.0
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
......+.++..+|+.+|++++....++++++-+|-- . .-.+ .++.+ +.+|.++++..++.+.+
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~-~-~~~G-k~l~D-~~~L~~~~i~~g~~i~l 71 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG-L-KVKG-KPAED-DVKISALKLKPNTKIMM 71 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe-e-cccC-CcCCC-CcCHHHcCCCCCCEEEE
Confidence 3444567888999999999999999999998877653 1 1112 23443 68999999988876643
No 78
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=72.64 E-value=14 Score=30.28 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=43.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
...+.+....|+.+|++++.+.++++.+..+|+ +. + ..+. .+.+|.++.+..+..|.+
T Consensus 9 ~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~-~~-g----~~l~-d~~~l~~~~v~~~~~i~v 66 (69)
T cd01769 9 TFELEVSPDDTVAELKAKIAAKEGVPPEQQRLI-YA-G----KILK-DDKTLSDYGIQDGSTLHL 66 (69)
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC-C----cCCC-CcCCHHHCCCCCCCEEEE
Confidence 345677889999999999999999998888884 22 2 2333 467899988887766554
No 79
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=64.73 E-value=5.4 Score=32.51 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=28.3
Q ss_pred CCCCCCccCcccceEEEEEEee--eCCCeEEEEEeceee
Q 002408 781 DDMWYCPQCKEHRQATKKLDLW--MLPDVLVFHLKRFSY 817 (927)
Q Consensus 781 ~n~w~C~~Ck~~~~a~K~~~I~--~lP~iLiIhLKRF~~ 817 (927)
.++|.||+|+.+--..|.+..- .+.+++=|++++|-.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 3578899999876666665554 578899999999864
No 80
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=63.54 E-value=11 Score=31.40 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=24.7
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIW 207 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw 207 (927)
++.....+.+++..++.++++.+|+.|++++++..|-
T Consensus 4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~ 40 (65)
T PF11470_consen 4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLK 40 (65)
T ss_dssp TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEE
T ss_pred cCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEE
Confidence 3445567889999999999999999999998865443
No 81
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=63.04 E-value=36 Score=29.34 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=49.2
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcc-eEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~-~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
++.......+...+|+.+|..-+......+... ++|..-++.. .+..+.++||.|+++..+..++||
T Consensus 14 pdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~---~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 14 PDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRR---ELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp TTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTE---ECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCc---CCCccccccHHHhcCCCCeEEEEE
Confidence 566677888999999999999998877665554 8876543322 222222589999999988888886
No 82
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=61.26 E-value=64 Score=27.77 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=47.5
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCC-CccCChhhhhccCCceEEEE
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~-~~~~tl~d~~l~~~q~ilve 240 (927)
.++.......++..+|+.+|.+-+....+.....++|.--++.. .+-. +.++||.|+.+..+..++||
T Consensus 11 lPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk---~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 11 LPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRR---TFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCc---CCccccccCCHHHCCCCCceEEEEe
Confidence 35666677889999999999999966555555566665433222 2222 33689999999888888776
No 83
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=60.73 E-value=41 Score=28.65 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.8
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEec
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 210 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~ 210 (927)
.+++....+.+-...|+.|+++++|+..++.+..+.++...
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 36777788999999999999999999999999988877663
No 84
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=60.44 E-value=44 Score=28.46 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=47.0
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
+++++...+.+-...|++|.+.++|+..++....+-++.... . . .+-.+. |..+..++++.||-+
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~-~-k-~l~~~q-----D~~~L~~~El~vE~r 70 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG-D-K-PLVLDQ-----DSSVLAGQEVRLEKR 70 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC-C-c-ccccCC-----ccceeeccEEEEEEe
Confidence 467778889999999999999999999999999888887622 1 1 122222 233344677888754
No 85
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.32 E-value=25 Score=40.02 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=49.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhC---CCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRG---IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~---l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++...||.+|++++....+ ++.++.||+ |.+ .+|.+ +++|.++++..+..|++=+.
T Consensus 9 ~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI-y~G-----kiL~D-d~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI-YSG-----KILSD-DKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE-ECC-----EECCC-CCcHHHcCCCCCCEEEEEec
Confidence 344567889999999999999999988 888888887 432 34443 57999999988876665544
No 86
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=56.71 E-value=1.1e+02 Score=26.86 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=41.0
Q ss_pred ccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEE-EeCCeeEEeecCCcccccc--cCCCCeEEE
Q 002408 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE-VYNHQIFRFFENPAELISS--IKDDEHIVA 583 (927)
Q Consensus 520 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e-~~~~~~~~~~~d~~~~~~~--i~~~d~i~~ 583 (927)
.....+++++.|+.+|+..|...+|+.....-+... .........+.|....+.. +.++..|.+
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V 80 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHV 80 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEE
Confidence 356788999999999999999999988766444332 2344444555555555553 344444443
No 87
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=54.75 E-value=26 Score=38.90 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChH-HHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (927)
..|..=|.=.-|.||+||++=.|=++.. |+.. .+..+..++..+ +|..|..
T Consensus 99 ~~g~~~Lkq~dNNCwVna~~~~LQ~~~~~f~~~-----------------------~l~~aw~~f~~G-----~~~~fVa 150 (320)
T PF08715_consen 99 VNGFRVLKQSDNNCWVNAACLQLQALKIKFKSP-----------------------GLDEAWNEFKAG-----DPAPFVA 150 (320)
T ss_dssp ETTEEEE---TTTHHHHHHHHHHTTST--BSSH-----------------------HHHHHHHHHHTT-------HHHHH
T ss_pred ECCEEEEEecCCCcHHHHHHHHHHhcCCccCCH-----------------------HHHHHHHHHhCC-----ChHHHHH
Confidence 4577777888999999999877766532 2221 111222222222 3666665
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHHHHHHH
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHE 424 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~e 424 (927)
.+-.. ....-++--||+++|..||+.++.
T Consensus 151 ~~Ya~-~~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 151 WCYAS-TNAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp HHHHH-TT--TTS---HHHHHHHHHTTB-T
T ss_pred HHHHH-cCCCCCCCcCHHHHHHHHHHhccc
Confidence 55432 245667899999999999877663
No 88
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=54.51 E-value=56 Score=27.64 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=32.4
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEec
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 210 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~ 210 (927)
+++....+.+-...|++|.+..+|+..+|.+..+.++...
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 6777788899999999999999999999999988887553
No 89
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=54.40 E-value=80 Score=27.48 Aligned_cols=51 Identities=22% Similarity=0.139 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCC-CCCceEEEEEeCC-eeEEeecCCccc
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLK-IDEGLLLAEVYNH-QIFRFFENPAEL 571 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~-~~~~l~~~e~~~~-~~~~~~~d~~~~ 571 (927)
-.++.++++.|..+++..+.+..++. ++.+..++|+... ...+.+.+...+
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~p 66 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECP 66 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCCh
Confidence 46889999999999999999999998 7889999999887 566777765544
No 90
>PLN02560 enoyl-CoA reductase
Probab=52.01 E-value=59 Score=36.03 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=43.8
Q ss_pred EEEeCccccHHHHHHHHHHHhCC-CCcceEEEEecCC--cccccCCCCccCChhhhhccCCceEEE
Q 002408 177 VIRLSKKASTRQLYEKVCKLRGI-EQEKARIWDYFNK--QRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 177 ~~~iS~~~t~~~l~~~~~~~~~l-~~~~~Rlw~~~~~--~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.+.++..+|+.+|++.+-+..++ +++..||+-.... ..+ ..+. .+++|.|+++.++..+.+
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g-~~L~-d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRP-TVLD-DSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCc-cccC-CCCCHHhcCCCCCceEEE
Confidence 67889999999999999998876 6788888843211 222 2333 467999999987766544
No 91
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=50.51 E-value=1.2e+02 Score=25.92 Aligned_cols=66 Identities=15% Similarity=0.082 Sum_probs=44.7
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCC-CccCChhhhhccCCceEEEE
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~-~~~~tl~d~~l~~~q~ilve 240 (927)
.++.......++..+|+.+|.+-+...... ...++|+--++.. .+-+ +.++||.|++|.. ..++++
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~---~~~~~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRR---VLTDLDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCc---cCCCCCccCcHHHcCCcc-ceEEEE
Confidence 356666778889999999999988765433 4567777544332 2222 4689999999984 444444
No 92
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=47.91 E-value=70 Score=27.81 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~ 208 (927)
-..+++....++.+|.+++++.++++++.+.|+-
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsY 45 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSY 45 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEe
Confidence 3567889999999999999999999988888883
No 93
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.79 E-value=1.3e+02 Score=26.28 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=42.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCC-CCceEEEEEeCCeeEEeecCCccc
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKI-DEGLLLAEVYNHQIFRFFENPAEL 571 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~-~~~l~~~e~~~~~~~~~~~d~~~~ 571 (927)
..++.+++..|..+++..+.+..++.. .....++|.......+.+.+...+
T Consensus 17 ~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~e~P 68 (90)
T smart00314 17 YKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDDENP 68 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCCCcc
Confidence 467889999999999999999999977 578999999866667777765444
No 94
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=46.06 E-value=71 Score=27.90 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=35.3
Q ss_pred eEEEEeccCC---CceEEEeCccccHHHHHHHHHHHhCCC--CcceEEEEec
Q 002408 164 CLKLIDSRDN---SQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYF 210 (927)
Q Consensus 164 ~l~i~~~~~~---~~~~~~iS~~~t~~~l~~~~~~~~~l~--~~~~Rlw~~~ 210 (927)
.++|+..... ...++.++...|..++.+.+.+.|++. +.++.||.+.
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~ 55 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVE 55 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEE
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEE
Confidence 4556543222 257899999999999999999999993 4578898443
No 95
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=45.64 E-value=14 Score=22.52 Aligned_cols=15 Identities=33% Similarity=0.999 Sum_probs=11.3
Q ss_pred EEEEeCCCCCEEEECCc
Q 002408 871 AYAKLIDENRWYHFDDS 887 (927)
Q Consensus 871 Ay~k~~~~~~Wy~fnDs 887 (927)
.+++ .++.||+|+++
T Consensus 2 ~W~~--~~~~wYy~~~~ 16 (19)
T PF01473_consen 2 GWVQ--DNGNWYYFDSD 16 (19)
T ss_dssp EEEE--ETTEEEEETTT
T ss_pred cCEE--ECCEEEEeCCC
Confidence 3556 47999999875
No 96
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=44.22 E-value=71 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=33.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCC--CcceEEEEecCC
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIE--QEKARIWDYFNK 212 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~--~~~~Rlw~~~~~ 212 (927)
....++.+++.+|..++.+.+.+.|++. ++++.|+.....
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~ 53 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGD 53 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECC
Confidence 5567899999999999999999999997 456888877554
No 97
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=43.50 E-value=65 Score=37.38 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=52.0
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
++|.+...+.+..+.+...+||.+||+.+.+.|+.+++..+|- |- + .+|. +++||..+.+.++-.|=+
T Consensus 16 irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLI-fa----G-rILK-D~dTL~~~gI~Dg~TvHL 83 (493)
T KOG0010|consen 16 IRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLI-YA----G-RILK-DDDTLKQYGIQDGHTVHL 83 (493)
T ss_pred eEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeee-ec----C-cccc-ChhhHHHcCCCCCcEEEE
Confidence 4444445555889999999999999999999999999987765 22 2 3444 478999999998866533
No 98
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=42.89 E-value=35 Score=33.86 Aligned_cols=32 Identities=38% Similarity=0.503 Sum_probs=24.0
Q ss_pred EEEEEeec-cCCCCeEEEEEEeCCCCCEEEECC
Q 002408 855 FAISNHYG-GLGGGHYTAYAKLIDENRWYHFDD 886 (927)
Q Consensus 855 ~AVi~H~G-~l~~GHYtAy~k~~~~~~Wy~fnD 886 (927)
.|+||--| ..||=|+.|++-++...+-|.||=
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 68888888 677779999999999999999973
No 99
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=1.6e+02 Score=26.70 Aligned_cols=68 Identities=19% Similarity=0.334 Sum_probs=48.8
Q ss_pred ceEEEEec-cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 163 LCLKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 163 ~~l~i~~~-~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
-++++-+. .+.....+.|.+..+++.|++.-|+.-+++.+.+|+. |.+ .. + ....|+.++...++..|
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFl-FdG-~r---I--~~~~TP~~L~mEd~D~I 87 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFL-FDG-QR---I--RETHTPADLEMEDGDEI 87 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEE-ECC-cC---c--CCCCChhhhCCcCCcEE
Confidence 34444333 3444557899999999999999999999999999864 332 21 1 24678888888877655
No 100
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=41.90 E-value=1.9e+02 Score=25.13 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=46.3
Q ss_pred EEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCC-CCCCceEEE-EEeCCeeEEeecCCccc
Q 002408 507 TVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCL-KIDEGLLLA-EVYNHQIFRFFENPAEL 571 (927)
Q Consensus 507 ~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~-~~~~~l~~~-e~~~~~~~~~~~d~~~~ 571 (927)
.+.|+..++.......++.+++..|.++++..+.+.+++ .+...+.++ ........+.+.+...+
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~p 70 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECP 70 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBH
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCch
Confidence 345566666655556789999999999999999999999 555667776 44455566666654443
No 101
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=40.20 E-value=1.4e+02 Score=25.37 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=36.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCcc-cccccCCCCeEEEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAE-LISSIKDDEHIVAY 584 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~-~~~~i~~~d~i~~~ 584 (927)
.+.+.++.+.|+++|++.++...++.... ..++ +.+ +++.|... .-..|.++..+..|
T Consensus 13 ~~~~~v~~~~TV~~LK~~I~~~~~~~~~~-qrLi--~~G---k~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 13 KVRVKCNPDDTIGDLKKLIAAQTGTRPEK-IVLK--KWY---TIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCChHH-EEEE--eCC---cCCCCCCCHHHcCCCCCCEEEEE
Confidence 35567889999999999999988865544 3332 333 35555421 22346666666554
No 102
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=39.85 E-value=98 Score=23.48 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~ 208 (927)
+.....+.++...|+.++++.++..++++++.++|+.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~ 42 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV 42 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE
Confidence 3445667788899999999999999998888888864
No 103
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=37.91 E-value=2.1e+02 Score=25.14 Aligned_cols=69 Identities=17% Similarity=0.099 Sum_probs=44.5
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccC---CCCccCChhhhhccCCceEEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP---LDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~l---l~~~~~tl~d~~l~~~q~ilve 240 (927)
++.......+...+|+.+|..-+- ..+-.+..++|---++......+ -.+.+.||+|++|.....++|+
T Consensus 12 p~G~Rl~rrF~~~~tl~~l~~fv~-~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 12 PNGTRVERRFLFTQSLRVIHDFLF-SLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHH-hCCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 566666788889999999999884 33444556665322221111011 1345789999999987777776
No 104
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=36.85 E-value=2.2e+02 Score=25.52 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=47.3
Q ss_pred EEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCC
Q 002408 508 VTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENP 568 (927)
Q Consensus 508 v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~ 568 (927)
..++|.-....+..+-++..|++|-.++++.+....++....+.+++|+....-..+.-++
T Consensus 13 l~IyP~~~a~~~~~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkEsGgEEwvL~p 73 (105)
T cd01779 13 LHIYPQLIAESTISCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKESGGEEWVLDP 73 (105)
T ss_pred EEEccCCCCCCceEeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeeccCCeeeecCc
Confidence 4445555555667778899999999999999999999999999999999886544444333
No 105
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=35.75 E-value=3e+02 Score=24.11 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=47.6
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.++.......+...+++.+|..-+-. .+.+++.+.|---++...... ++.+.||++++|.....++||-+
T Consensus 12 lP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~--~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 12 YPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSH--LDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCC--cccCCCHHHcCCCCCcEEEEecC
Confidence 35566667778888999999987766 466667776653322222111 34458999999999888888743
No 106
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=35.10 E-value=75 Score=34.06 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=28.9
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCC
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNK 212 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~ 212 (927)
....+.+|+..|..+|.+++-+.++++++.+|+|.....
T Consensus 190 ~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~~ 228 (249)
T PF12436_consen 190 PEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNPY 228 (249)
T ss_dssp --EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---TT
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEeccC
Confidence 456889999999999999999999999999999998653
No 107
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=34.91 E-value=1.4e+02 Score=25.62 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=34.9
Q ss_pred EEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEE
Q 002408 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVA 583 (927)
Q Consensus 522 ~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~ 583 (927)
+.+.++.++|+.+|++.+++..++...+ ..++ |.+ +.+.|..-.-..|++++.|+.
T Consensus 14 ~~l~v~~~~TV~~LK~~I~~~~~~~~~~-qrL~--~~G---k~L~d~~L~~~gi~~~~~i~l 69 (78)
T cd01804 14 FDLSVPPDETVEGLKKRISQRLKVPKER-LALL--HRE---TRLSSGKLQDLGLGDGSKLTL 69 (78)
T ss_pred EEEEECCcCHHHHHHHHHHHHhCCChHH-EEEE--ECC---cCCCCCcHHHcCCCCCCEEEE
Confidence 6688889999999999999998875543 3332 333 344544211234555555543
No 108
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=32.28 E-value=3.4e+02 Score=23.55 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=46.9
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
.++.......+...+++++|..-+... +.+...++|---++....+ -.+.+.||.|++|.....++||.
T Consensus 11 lP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~--~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 11 TPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLT--QLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCc--CCCCCCcHHHcCCCCCcEEEEEc
Confidence 356666677889999999999888653 5455566654333322221 12456899999999888888884
No 109
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=21 Score=43.58 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=63.5
Q ss_pred EeeeCCCeEEEEEeceeeeccccccc--ceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEEEeCC
Q 002408 800 DLWMLPDVLVFHLKRFSYSRYLKNKL--DTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLID 877 (927)
Q Consensus 800 ~I~~lP~iLiIhLKRF~~~~~~~~Ki--~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k~~~ 877 (927)
.|.+.|+|..|.|. +......|. .+.+.+- .++|++..-.........|+|++++.-... +++|.|+|. .
T Consensus 677 ~is~~P~vftIvle---wEk~ETe~eI~~T~~aL~-teidis~~y~~g~ep~t~yrLVSmv~~~e~--~~~~~C~Ay--e 748 (806)
T KOG1887|consen 677 ILSPCPPVFTIVLE---WEKSETEKEISETTKALA-TEIDISRLYREGLEPNTKYRLVSMVGNHEE--GEEYICFAY--E 748 (806)
T ss_pred hcCCCCCeeEeeee---hhcccchHHHHHHHHHHH-hhhhHHHHhhhccCcCceeEEEEEeeeccc--cceEEEeec--c
Confidence 57779999999665 111111111 1222233 255655433222235578999999966544 899999998 5
Q ss_pred CCCEE--EECCceeeecC-cCcccC------CceEEEEEEEec
Q 002408 878 ENRWY--HFDDSHVSPVS-EGDIKT------SAAYVLFYRRVK 911 (927)
Q Consensus 878 ~~~Wy--~fnDs~V~~v~-~~~V~s------~~AYlLFY~R~~ 911 (927)
.++|. ..+|..+..+. +.+|++ -.+=||||+++.
T Consensus 749 ~Nrwvs~r~~~~~~e~iG~w~dvvr~c~e~~vrpeil~ye~~~ 791 (806)
T KOG1887|consen 749 PNRWVSLRHEDSQGEVVGDWKDVVRFCGERKVRPEILFYEAQQ 791 (806)
T ss_pred CCcchhhHHHHHHhhhccchHHHHHHHhcccccHHHHHHHHHH
Confidence 77777 88998877665 334432 125677777643
No 110
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=29.11 E-value=22 Score=39.71 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=64.7
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC----CCccCh--
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG----RAAVAP-- 389 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~----~~~i~p-- 389 (927)
..-++|+.|.||-|+.+|..|.+.+..++...+-..-+..+....... ...+...|+-.++..-... ...+.|
T Consensus 175 e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~-~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~ 253 (420)
T KOG1871|consen 175 EFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFV-RSPISEIFGGQLRSVLYQPSNKESATLQPFF 253 (420)
T ss_pred cccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcc-cCcHHHhhccccccceeccccccccccCccc
Confidence 345899999999999999999999999998876543333333222111 1233333333333221111 111111
Q ss_pred -----------HHHHHHHHhh-----CCCCC--------CCCCCcHHHHHHHHHHHHHHHhhh
Q 002408 390 -----------RAFKGKLARF-----APQFS--------GYNQHDSQELLAFLLDGLHEDLNR 428 (927)
Q Consensus 390 -----------~~~~~~l~~~-----~~~f~--------~~~QqDA~Efl~~LLd~L~eel~~ 428 (927)
+....++... .|.+. ...|-++++|..+|+..|+..+-+
T Consensus 254 tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye 316 (420)
T KOG1871|consen 254 TLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYE 316 (420)
T ss_pred eeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHH
Confidence 1222333222 22222 257999999999999999977644
No 111
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=21 Score=42.26 Aligned_cols=107 Identities=17% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC-CCccChHHHHH
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG-RAAVAPRAFKG 394 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-~~~i~p~~~~~ 394 (927)
..-..|+.+.+|||+||+.+|.++.++.+.-..-..-...................+..+.+.+-... .....|. ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~ 152 (492)
T KOG1867|consen 74 KLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDAELLKLADIKKYKEQPFHQLDSTLLTHLAEATVCQQTLLKENPK-DRL 152 (492)
T ss_pred cccccccccccccceeehhhheeccCCcEeeccchhhHHHHHhhhccchhhccchhhhhhhhhhccchhcccCCcc-ccc
Confidence 34578899999999999999999999866433211100000000000000001111111111111110 1111222 112
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHHHHHH
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLLDGLH 423 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~ 423 (927)
........+.|..=+++.+|+..+|..|.
T Consensus 153 ~~~~~~~~l~g~~n~g~tcfmn~ilqsl~ 181 (492)
T KOG1867|consen 153 VLSTTALGLRGLRNLGSTCFMNVILQSLL 181 (492)
T ss_pred ccceeeecccccccccHHHHHHHHHHHhh
Confidence 22334456778889999999999999986
No 112
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=27.05 E-value=1.8e+02 Score=24.79 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=36.9
Q ss_pred CccccHHHHHHHHHHHhC-CCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 181 SKKASTRQLYEKVCKLRG-IEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 181 S~~~t~~~l~~~~~~~~~-l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
+...|+.+|++.+-+..+ ++++..||+... .+..+ . .+++|.++++..+..+.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~---~g~~L-~-d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEP---KGKSL-K-DDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCC---CCccc-C-CcccHhhcCCCCCCEEEE
Confidence 567899999999988875 467777887332 33233 3 356899888877665544
No 113
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=27.04 E-value=3e+02 Score=24.00 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=25.7
Q ss_pred EEEEeCCCCCHHHHHHHHHhhcCCCCCCceE
Q 002408 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (927)
Q Consensus 522 ~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 552 (927)
...++++..++.+|++.+...+|+.+..+-+
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL 45 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPASSMRL 45 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCccceEE
Confidence 4567899999999999999999987765433
No 114
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=26.89 E-value=2.9e+02 Score=25.75 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=42.3
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhcc
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 232 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~ 232 (927)
++.....+..-...|+-+|++.+--+.+.++++=||| . .. .+|+ .++||.|+++.
T Consensus 9 R~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-k-d~----qvLe-D~kTL~d~g~t 63 (119)
T cd01788 9 RHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-K-DD----QLLD-DGKTLGDCGFT 63 (119)
T ss_pred ecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-c-Cc----eeec-ccccHHHcCcc
Confidence 3444455666788999999999999999999999999 2 11 4555 47999999884
No 115
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=26.28 E-value=15 Score=42.24 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred EEeeeCCCeEEEEEeceeeecccccccceeeeccCC--------------CcccccccccCCC-----------------
Q 002408 799 LDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL--------------NLDLSKYMKSKDG----------------- 847 (927)
Q Consensus 799 ~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~--------------~LDls~~~~~~~~----------------- 847 (927)
+.+...|-.+||+.-||.-+..+-.|+-..+..|+. .|++-+.-.....
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~Vtd~~e~~prQcsicg~la~yecr~c~~sp~~~sgle~~~fc~~c~ 595 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLPVTDRHEVNPRQCSICGLLAPYECRYCPPSPPRASGLEIKQFCKTCN 595 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEeeccccccCCcceeeecccCCCCCCccCCCCcccccchhHhhhhhHHH
Q ss_pred ----------------------------CceEEEEEEEEEeeccCCCCeEEEEEEe--------------CCCCCEEEEC
Q 002408 848 ----------------------------ESYVYDLFAISNHYGGLGGGHYTAYAKL--------------IDENRWYHFD 885 (927)
Q Consensus 848 ----------------------------~~~~YdL~AVi~H~G~l~~GHYtAy~k~--------------~~~~~Wy~fn 885 (927)
....-+|+||++---+ ||+|+++- ..++.=-.||
T Consensus 596 ~qfh~h~kr~~Vf~~k~l~~~~~~h~~i~~~~~el~~~l~~~t~----~~~~~~~~~~~~~a~lf~~~~~~r~~gqn~~~ 671 (724)
T KOG3556|consen 596 TQFHLHPKRNPVFLPKDLPDWDWRHGCIPCQNMELFAVLCIETS----HYVAFVKYGKDDSAWLFFDSMADRDGGQNGFN 671 (724)
T ss_pred HHHhhhcccCcccCCccCcccccccccchhhhHhhhhhhhcccc----ccccHHHhccchhhhhhhcchhhhhcccccCC
Q ss_pred CceeeecCcCcc----------------------cCCceEEEEEE
Q 002408 886 DSHVSPVSEGDI----------------------KTSAAYVLFYR 908 (927)
Q Consensus 886 Ds~V~~v~~~~V----------------------~s~~AYlLFY~ 908 (927)
|..|++..+-.- .-+.|||+.|+
T Consensus 672 ~~q~~~~~~v~e~l~~s~~~~h~ldr~i~~~~~~~~~~~~~~m~q 716 (724)
T KOG3556|consen 672 IPQVTPCPEVGEYLKMSLEDLHSLDRRIQGCARRLLCDAYMCMYQ 716 (724)
T ss_pred CccccCCcchhhHhhcchhhhHHHHHHHHHHHHHHhccccceeee
No 116
>smart00455 RBD Raf-like Ras-binding domain.
Probab=25.99 E-value=1.1e+02 Score=25.72 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=34.3
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEe
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDY 209 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~ 209 (927)
.+++....+.+-...|+.|+++.+|+..++.+..+.++..
T Consensus 6 LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~ 45 (70)
T smart00455 6 LPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLR 45 (70)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 3566677888899999999999999999999988877754
No 117
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=24.30 E-value=1.8e+02 Score=25.04 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHhC--CC-CcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 182 KKASTRQLYEKVCKLRG--IE-QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 182 ~~~t~~~l~~~~~~~~~--l~-~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
...|+.+|++++...++ +. +++.||- |.+ ..|. .+++|.++++..+-.|.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI-y~G-----KiL~-D~~TL~dygI~~gstlh 71 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI-HCG-----RKLK-DDQTLDFYGIQSGSTIH 71 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE-eCC-----cCCC-CCCcHHHcCCCCCCEEE
Confidence 46799999999999974 64 6777775 433 2233 46899999999876553
No 118
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=24.30 E-value=54 Score=27.23 Aligned_cols=34 Identities=18% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCCccCcccceEEEEEEeee--CCCeEEEEEeceee
Q 002408 784 WYCPQCKEHRQATKKLDLWM--LPDVLVFHLKRFSY 817 (927)
Q Consensus 784 w~C~~Ck~~~~a~K~~~I~~--lP~iLiIhLKRF~~ 817 (927)
|.|++|+...-..+++..-. +-.++=|+.+||..
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~ 36 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT 36 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence 78999987654444443322 34566777777754
No 119
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=22.88 E-value=4.9e+02 Score=22.33 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=36.3
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCC
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNK 212 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~ 212 (927)
+++....+.+-...|++|-+.++.+..+|.++-+.++....+
T Consensus 7 PnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~~~~ 48 (74)
T cd01816 7 PNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRLGDG 48 (74)
T ss_pred CCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEcCCC
Confidence 556667888889999999999999999999999999988544
No 120
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=22.85 E-value=1.2e+02 Score=26.99 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccC
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM 233 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~ 233 (927)
..+...+..-..+|+-+|+.++--+..-+.++-|||..... .++. ..++|.|+++.+
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e----qlL~-D~ktL~d~gfts 66 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE----QLLD-DGKTLGDCGFTS 66 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHH----HHhh-ccchhhhccccc
Confidence 33344556677889999998888888888899999976432 3444 468888887653
No 121
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=22.78 E-value=1.8e+02 Score=26.34 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=36.9
Q ss_pred eeeeccceEEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCC---cceEEEEec
Q 002408 157 RVEVFXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQ---EKARIWDYF 210 (927)
Q Consensus 157 ~vElyP~~l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~---~~~Rlw~~~ 210 (927)
.|-+||=.|+. ...-..+.+++..|+.+++..+.+.||+.. ++++|-...
T Consensus 4 ~iKVY~G~L~~----~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~ 56 (97)
T cd01783 4 VVKVYPGWLRV----GVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVL 56 (97)
T ss_pred eEEEecCcccc----CcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEE
Confidence 46677776653 233458899999999999999999999864 456665543
No 122
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=22.39 E-value=4e+02 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=26.4
Q ss_pred EEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCC
Q 002408 522 FTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH 559 (927)
Q Consensus 522 ~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 559 (927)
+.+.+..+.|+.++++.+++..++.. ++..++-++.+
T Consensus 15 ~~~~v~~~~TV~~lK~~I~~~~~i~~-~~qrL~~~~~G 51 (80)
T cd01792 15 FLVSLRDSMTVSELKQQIAQKIGVPA-FQQRLAHLDSR 51 (80)
T ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCH-HHEEEEeccCC
Confidence 45677889999999999999988644 44444333444
No 123
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=20.83 E-value=93 Score=32.50 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=25.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCc---ceEEEEecCC
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQE---KARIWDYFNK 212 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~---~~Rlw~~~~~ 212 (927)
...+.+.+..|+.||++.+.+..+++.+ ++|+|.....
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ 75 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNH 75 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETT
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECC
Confidence 4578899999999999999999888654 7999988665
No 124
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=20.52 E-value=1.9e+02 Score=24.85 Aligned_cols=71 Identities=23% Similarity=0.344 Sum_probs=42.8
Q ss_pred EEEeccCC-CceEEEeCccccHHHHHHHHHHHhCCCCcc---eEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 166 KLIDSRDN-SQTVIRLSKKASTRQLYEKVCKLRGIEQEK---ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 166 ~i~~~~~~-~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~---~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
++.+...+ ....+.+....++.+|+..+...++++... -+-|.+. ..++ ..+ +.+++|.++.+.++..+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~-~~~g-~~L-~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLA-RAGG-RPL-DPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG--GGT-EEE-ETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEE-ecCC-ccc-CCcCcHhHcCCCCCCEEEe
Confidence 34444443 667888999999999999999999986532 2368776 3444 333 4579999999998876543
No 125
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=20.22 E-value=2.4e+02 Score=23.93 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=27.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 554 (927)
.+.+.+..+.|+.++++.++...++..+..=++.
T Consensus 11 ~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~ 44 (74)
T cd01813 11 EYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLG 44 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEe
Confidence 4678888999999999999999998776554443
No 126
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.06 E-value=7e+02 Score=23.08 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=46.1
Q ss_pred ecCCCCce-eEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCC----CCCceEEEEEeCCeeEEeecC
Q 002408 496 LPLPSTVT-RTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLK----IDEGLLLAEVYNHQIFRFFEN 567 (927)
Q Consensus 496 L~ip~~~~-~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~----~~~~l~~~e~~~~~~~~~~~d 567 (927)
|..|.+.- -.....++.-|+...-....+.|+...+..++++.|.+.+.+. ++..+-+.++..+.-.+-+.|
T Consensus 11 ~s~p~e~lef~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d 87 (112)
T cd01782 11 LSYPTEDLEFHGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLD 87 (112)
T ss_pred ecCCCcccEEeeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCC
Confidence 44554432 2334455666666666678899999999999999999887732 334566666655444444443
Done!