Query 002408
Match_columns 927
No_of_seqs 385 out of 2108
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 01:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 1.6E-76 5.6E-81 671.5 34.2 357 315-913 4-361 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 3.1E-73 1.1E-77 649.6 28.8 338 315-911 58-396 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.1E-69 3.8E-74 610.6 33.5 341 314-914 4-346 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 2.2E-68 7.4E-73 601.8 25.9 337 317-914 1-354 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 6E-63 2.1E-67 556.5 28.3 298 315-913 2-317 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 2.3E-62 7.9E-67 562.7 23.8 322 316-916 11-399 (404)
7 3mhs_A Ubiquitin carboxyl-term 100.0 1E-60 3.4E-65 560.4 28.3 316 314-912 136-475 (476)
8 1vjv_A Ubiquitin carboxyl-term 100.0 6.1E-60 2.1E-64 544.3 26.6 297 314-911 19-414 (415)
9 2f1z_A Ubiquitin carboxyl-term 100.0 2.2E-59 7.4E-64 554.2 27.8 299 314-913 170-486 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 9.9E-58 3.4E-62 561.5 27.4 156 313-501 338-513 (854)
11 3jyu_A Ubiquitin carboxyl-term 100.0 1.7E-37 5.8E-42 324.6 20.7 215 10-245 3-223 (231)
12 4a3p_A Ubiquitin carboxyl-term 100.0 3.4E-37 1.2E-41 319.6 21.3 204 19-245 3-211 (217)
13 2vhf_A Ubiquitin carboxyl-term 99.9 2.7E-26 9.1E-31 248.3 12.5 99 318-423 8-112 (374)
14 1w6v_A Ubiquitin carboxyl-term 99.9 8.9E-25 3E-29 209.5 13.9 116 11-149 22-140 (141)
15 2ylm_A Ubiquitin carboxyl-term 98.8 9.7E-08 3.3E-12 111.4 20.0 161 460-646 303-475 (530)
16 4b6w_A Tubulin-specific chaper 92.3 0.27 9.1E-06 42.2 6.6 65 176-240 17-82 (86)
17 2kj6_A Tubulin folding cofacto 92.2 0.92 3.1E-05 39.8 10.0 65 175-239 28-92 (97)
18 1wjn_A Tubulin-folding protein 91.7 0.62 2.1E-05 40.8 8.4 68 173-240 22-90 (97)
19 2kjr_A CG11242; UBL, ubiquitin 91.3 0.78 2.7E-05 40.1 8.5 64 175-239 29-92 (95)
20 2kan_A Uncharacterized protein 91.2 0.89 3E-05 39.6 8.8 73 165-243 16-88 (94)
21 4dbg_A Ranbp-type and C3HC4-ty 91.1 0.61 2.1E-05 41.5 7.7 73 159-238 16-95 (105)
22 3plu_A Ubiquitin-like modifier 90.9 0.94 3.2E-05 39.2 8.4 73 158-237 15-88 (93)
23 3a9j_A Ubiquitin; protein comp 88.8 1.9 6.4E-05 35.2 8.6 63 173-242 10-72 (76)
24 3phx_B Ubiquitin-like protein 88.8 2.5 8.5E-05 35.0 9.4 64 172-242 13-76 (79)
25 3mtn_B UBA80, ubcep1, ubiquiti 88.7 1.4 4.7E-05 37.0 7.9 64 173-243 13-76 (85)
26 3k9o_B Ubiquitin, UBB+1; E2-25 88.5 1.7 5.7E-05 37.7 8.5 66 173-245 11-76 (96)
27 1sif_A Ubiquitin; hydrophobic 87.9 1.4 4.7E-05 37.7 7.4 65 172-243 18-82 (88)
28 3n3k_B Ubiquitin; hydrolase, p 87.9 1.4 4.8E-05 37.0 7.4 63 174-243 14-76 (85)
29 2bwf_A Ubiquitin-like protein 87.8 2 6.7E-05 35.3 8.1 62 172-240 12-73 (77)
30 3v6c_B Ubiquitin; structural g 87.6 1.8 6.2E-05 37.1 8.0 62 172-240 26-87 (91)
31 1wxv_A BAG-family molecular ch 87.5 1.8 6.2E-05 37.2 8.0 63 172-240 15-82 (92)
32 2uyz_B Small ubiquitin-related 87.3 1.9 6.6E-05 35.7 7.8 63 173-242 13-75 (79)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 87.2 2.2 7.4E-05 36.1 8.2 63 174-243 18-80 (87)
34 4dwf_A HLA-B-associated transc 87.2 2.1 7.2E-05 36.5 8.2 62 172-241 14-75 (90)
35 4hcn_B Polyubiquitin, ubiquiti 86.7 1.8 6.1E-05 37.8 7.5 64 172-242 31-94 (98)
36 3dbh_I NEDD8; cell cycle, acti 86.6 1.8 6.1E-05 36.7 7.4 63 172-241 21-83 (88)
37 2daf_A FLJ35834 protein; hypot 86.6 3.4 0.00012 37.2 9.2 77 161-244 14-90 (118)
38 1wju_A NEDD8 ultimate buster-1 86.4 2.4 8.2E-05 37.3 8.0 60 173-239 29-88 (100)
39 4fbj_B NEDD8; effector-HOST ta 86.4 1.9 6.4E-05 36.8 7.3 66 172-244 9-74 (88)
40 2hj8_A Interferon-induced 17 k 86.3 3.5 0.00012 35.1 9.1 63 174-243 15-77 (88)
41 1wyw_B Ubiquitin-like protein 86.3 2.8 9.7E-05 36.5 8.6 72 164-242 21-93 (97)
42 3vdz_A Ubiquitin-40S ribosomal 86.1 2.9 0.0001 37.4 8.8 64 172-242 44-107 (111)
43 2klc_A Ubiquilin-1; ubiquitin- 86.0 3 0.0001 36.7 8.6 63 173-242 34-96 (101)
44 1v6e_A Cytoskeleton-associated 85.9 1.7 5.9E-05 37.7 7.0 65 175-239 20-84 (95)
45 1t0y_A Tubulin folding cofacto 85.9 2.4 8.4E-05 38.7 8.3 66 175-240 19-84 (122)
46 1yx5_B Ubiquitin; proteasome, 85.9 2.9 0.0001 36.3 8.5 64 174-244 11-74 (98)
47 2kd0_A LRR repeats and ubiquit 85.7 2 6.8E-05 36.5 7.1 61 172-239 20-80 (85)
48 3a4r_A Nfatc2-interacting prot 85.5 3.8 0.00013 34.2 8.6 56 175-237 20-75 (79)
49 1yqb_A Ubiquilin 3; structural 85.5 3.7 0.00013 36.0 8.9 61 175-242 33-93 (100)
50 1wx7_A Ubiquilin 3; ubiquitin- 85.3 3.7 0.00013 36.3 9.0 62 175-243 28-89 (106)
51 4eew_A Large proline-rich prot 85.1 3.5 0.00012 34.9 8.5 66 165-238 18-84 (88)
52 1v5o_A 1700011N24RIK protein; 84.9 2.4 8.4E-05 37.3 7.6 62 175-242 23-84 (102)
53 2fnj_B Transcription elongatio 84.8 2.7 9.4E-05 38.1 7.8 67 172-245 10-83 (118)
54 2l7r_A Ubiquitin-like protein 84.8 2.5 8.5E-05 36.5 7.4 63 173-242 27-89 (93)
55 1ndd_A NEDD8, protein (ubiquit 84.4 3.9 0.00013 33.2 8.3 63 173-242 10-72 (76)
56 4ajy_B Transcription elongatio 83.6 2.8 9.5E-05 38.0 7.2 68 171-245 9-83 (118)
57 2wyq_A HHR23A, UV excision rep 83.2 5.1 0.00017 33.5 8.6 62 173-241 15-79 (85)
58 1j8c_A Ubiquitin-like protein 83.0 4.1 0.00014 37.4 8.4 64 173-243 41-104 (125)
59 2ojr_A Ubiquitin; lanthide-bin 83.0 5 0.00017 35.8 8.9 63 173-242 45-107 (111)
60 3m63_B Ubiquitin domain-contai 82.4 1.3 4.4E-05 39.1 4.6 61 172-239 36-96 (101)
61 1uh6_A Ubiquitin-like 5; beta- 81.7 5.2 0.00018 35.1 8.1 60 173-239 38-97 (100)
62 3m62_B UV excision repair prot 81.7 2.1 7.1E-05 38.1 5.7 63 173-242 11-73 (106)
63 2dzi_A Ubiquitin-like protein 81.3 4.6 0.00016 33.3 7.6 60 174-240 18-77 (81)
64 1wy8_A NP95-like ring finger p 81.2 8.4 0.00029 32.5 9.4 63 174-243 19-82 (89)
65 2kk8_A Uncharacterized protein 80.7 6 0.0002 33.4 8.0 62 173-240 20-81 (84)
66 2io1_B Small ubiquitin-related 80.4 5.2 0.00018 34.7 7.7 60 172-238 16-75 (94)
67 1v86_A DNA segment, CHR 7, way 80.3 3.1 0.0001 36.1 6.2 60 172-239 25-84 (95)
68 2eke_C Ubiquitin-like protein 79.8 5.6 0.00019 35.3 7.8 67 165-238 32-98 (106)
69 2io0_B Small ubiquitin-related 79.3 7.5 0.00026 33.4 8.3 59 172-237 14-72 (91)
70 1wm3_A Ubiquitin-like protein 79.2 5.9 0.0002 32.3 7.3 59 172-237 10-68 (72)
71 1we6_A Splicing factor, putati 78.6 6.3 0.00022 35.1 8.0 63 174-243 41-104 (111)
72 1wx8_A Riken cDNA 4931431F19; 78.4 4.1 0.00014 35.2 6.5 61 173-240 26-86 (96)
73 2faz_A Ubiquitin-like containi 78.3 9.3 0.00032 31.3 8.5 58 177-241 17-75 (78)
74 1we7_A SF3A1 protein; structur 77.6 7.9 0.00027 34.7 8.4 61 176-243 48-108 (115)
75 2d07_B Ubiquitin-like protein 77.0 9.5 0.00033 32.9 8.3 59 172-237 26-84 (93)
76 1uel_A HHR23B, UV excision rep 76.8 9.4 0.00032 32.9 8.3 63 173-242 10-75 (95)
77 2kdi_A Ubiquitin, vacuolar pro 76.6 7.9 0.00027 34.7 8.0 65 173-244 19-83 (114)
78 1wz0_A Ubiquitin-like protein 75.9 7.9 0.00027 34.2 7.6 59 172-237 33-91 (104)
79 2kzr_A Ubiquitin thioesterase 74.9 3.1 0.00011 35.2 4.6 63 175-240 11-75 (86)
80 1wgg_A Ubiquitin carboxyl-term 74.5 3.3 0.00011 36.0 4.7 59 173-239 16-75 (96)
81 3u30_A Ubiquitin, linear DI-ub 74.3 10 0.00034 36.6 8.8 66 172-244 29-94 (172)
82 3kyd_D Small ubiquitin-related 74.3 12 0.00041 33.7 8.3 69 163-238 39-108 (115)
83 1ttn_A DC-UBP, dendritic cell- 72.8 6.5 0.00022 34.7 6.3 62 173-241 33-94 (106)
84 3rt3_B Ubiquitin-like protein 72.8 13 0.00045 35.2 9.0 64 173-243 91-154 (159)
85 1wgd_A Homocysteine-responsive 72.6 14 0.00048 31.5 8.4 58 176-240 22-83 (93)
86 1v2y_A 3300001G02RIK protein; 72.4 5.6 0.00019 35.3 5.7 65 172-242 16-95 (105)
87 2k8h_A Small ubiquitin protein 72.4 11 0.00039 33.5 7.8 59 172-237 35-93 (110)
88 2pjh_A Protein NPL4, nuclear p 71.0 2.9 0.0001 35.1 3.4 66 173-240 13-78 (80)
89 3l0w_B Monoubiquitinated proli 70.7 14 0.00047 35.7 8.6 66 173-245 10-75 (169)
90 3q3f_A Ribonuclease/ubiquitin 70.6 18 0.00063 35.5 9.6 64 172-242 114-177 (189)
91 3rt3_B Ubiquitin-like protein 69.5 18 0.00062 34.1 9.2 66 172-242 11-76 (159)
92 3qx1_A FAS-associated factor 1 69.4 16 0.00055 30.7 7.7 68 171-242 15-83 (84)
93 1wf9_A NPL4 family protein; be 69.3 4.5 0.00015 35.9 4.4 68 173-240 16-92 (107)
94 1v5t_A 8430435I17RIK protein; 68.2 6.2 0.00021 33.7 5.0 60 174-239 17-79 (90)
95 3pge_A SUMO-modified prolifera 68.1 11 0.00037 37.5 7.3 62 171-239 36-97 (200)
96 2kvr_A Ubiquitin carboxyl-term 67.7 6.3 0.00022 36.4 5.2 40 176-215 58-97 (130)
97 3goe_A DNA repair protein RAD6 67.3 23 0.0008 29.3 7.7 59 171-236 17-76 (82)
98 3b08_A Polyubiquitin-C, ubiqui 66.8 14 0.00049 34.4 7.8 63 173-242 86-148 (152)
99 2daj_A KIAA0977 protein, COBL- 66.7 11 0.00036 31.7 5.7 64 165-232 11-75 (91)
100 3tix_A Ubiquitin-like protein 66.0 11 0.00036 37.1 6.5 60 171-237 64-123 (207)
101 2jxx_A Nfatc2-interacting prot 64.6 24 0.00082 30.6 8.0 56 175-237 38-93 (97)
102 2dzm_A FAS-associated factor 1 64.4 15 0.00052 32.1 6.7 61 173-239 18-78 (100)
103 2lxa_A Ubiquitin-like protein 62.0 10 0.00034 32.3 5.0 55 179-240 19-75 (87)
104 4a20_A Ubiquitin-like protein 61.8 18 0.00062 31.4 6.8 57 177-240 35-93 (98)
105 1x1m_A Ubiquitin-like protein 58.9 19 0.00065 31.7 6.6 51 183-240 44-97 (107)
106 2al3_A TUG long isoform; TUG U 58.3 11 0.00039 32.1 4.6 37 171-207 17-53 (90)
107 2dzk_A UBX domain-containing p 57.2 51 0.0017 29.1 9.0 69 170-241 20-89 (109)
108 3b08_A Polyubiquitin-C, ubiqui 56.2 33 0.0011 31.8 8.2 64 173-243 10-73 (152)
109 3u30_A Ubiquitin, linear DI-ub 52.9 27 0.00093 33.5 7.1 62 173-241 106-167 (172)
110 1qmy_A Protease, leader protea 52.0 5.8 0.0002 36.4 1.8 25 316-340 10-34 (167)
111 1wia_A Hypothetical ubiquitin- 52.0 17 0.00058 31.1 4.9 58 174-240 18-75 (95)
112 3u5e_m 60S ribosomal protein L 49.4 3.5 0.00012 37.9 0.0 64 175-245 12-75 (128)
113 2kdb_A Homocysteine-responsive 48.7 42 0.0014 29.1 6.9 56 175-237 37-96 (99)
114 3b1l_X E3 ubiquitin-protein li 53.6 3.8 0.00013 33.4 0.0 59 175-240 12-70 (76)
115 2cr5_A Reproduction 8; UBX dom 47.3 1E+02 0.0035 27.0 9.4 70 170-243 30-99 (109)
116 2gow_A HCG-1 protein, ubiquiti 44.8 45 0.0016 30.3 6.7 61 173-240 27-95 (125)
117 2kjr_A CG11242; UBL, ubiquitin 43.8 1.5E+02 0.005 25.3 9.6 61 521-582 29-91 (95)
118 4b6w_A Tubulin-specific chaper 43.6 73 0.0025 26.7 7.5 62 521-583 16-80 (86)
119 1wgh_A Ubiquitin-like 3, HCG-1 42.9 70 0.0024 28.6 7.6 61 173-240 26-94 (116)
120 1rrb_A RAF-1 RBD, RAF proto-on 42.8 1.7E+02 0.0059 25.6 9.5 75 165-243 21-95 (107)
121 1c1y_B Proto-onkogene serine/t 42.5 1E+02 0.0035 25.4 7.6 40 171-210 9-48 (77)
122 4ekf_A Adenain; alpha and beta 42.0 24 0.00081 34.2 4.4 32 855-886 40-72 (204)
123 3u5c_f 40S ribosomal protein S 42.0 5.4 0.00018 37.9 0.0 62 175-243 12-73 (152)
124 1oey_A P67-PHOX, neutrophil cy 41.9 69 0.0024 26.9 6.8 55 174-230 14-68 (83)
125 3ai5_A Yeast enhanced green fl 41.9 58 0.002 34.5 8.0 69 165-240 234-303 (307)
126 1wgr_A Growth factor receptor- 39.7 90 0.0031 27.1 7.4 62 505-570 9-71 (100)
127 1v6e_A Cytoskeleton-associated 39.5 1.7E+02 0.0059 24.6 9.8 35 520-554 19-53 (95)
128 2kj6_A Tubulin folding cofacto 39.4 1.2E+02 0.0041 26.1 8.3 36 520-555 27-62 (97)
129 1t0y_A Tubulin folding cofacto 38.1 1.9E+02 0.0063 25.9 9.8 35 520-554 18-52 (122)
130 2dzj_A Synaptic glycoprotein S 37.3 35 0.0012 28.8 4.5 57 177-238 26-84 (88)
131 1wj4_A KIAA0794 protein; UBX d 36.1 92 0.0032 28.2 7.4 68 171-242 51-119 (124)
132 2l05_A Serine/threonine-protei 35.5 1.6E+02 0.0056 25.2 8.0 72 164-242 19-90 (95)
133 1v5o_A 1700011N24RIK protein; 33.9 1.2E+02 0.004 26.1 7.5 56 521-582 23-80 (102)
134 1wjn_A Tubulin-folding protein 33.9 1E+02 0.0035 26.2 7.1 63 521-583 24-89 (97)
135 2l76_A Nfatc2-interacting prot 33.5 1.3E+02 0.0043 25.9 7.2 66 163-237 22-87 (95)
136 4hcn_B Polyubiquitin, ubiquiti 33.0 1.4E+02 0.0049 25.3 7.9 43 506-552 23-65 (98)
137 1wju_A NEDD8 ultimate buster-1 32.8 2.2E+02 0.0077 24.6 8.9 60 520-586 30-91 (100)
138 1wxm_A A-RAF proto-oncogene se 32.0 1.8E+02 0.0062 24.4 7.7 71 165-242 10-80 (86)
139 3mtn_B UBA80, ubcep1, ubiquiti 31.7 2E+02 0.0069 23.1 8.9 55 521-582 15-71 (85)
140 2bps_A YUKD protein; ubiquitin 31.0 26 0.0009 29.3 2.5 65 171-238 14-79 (81)
141 3mp2_A Non-structural protein 30.6 42 0.0014 33.4 4.3 30 861-894 167-196 (211)
142 3mp2_A Non-structural protein 30.5 55 0.0019 32.6 5.1 71 316-419 10-80 (211)
143 3plu_A Ubiquitin-like modifier 30.3 1.4E+02 0.0048 25.5 7.0 58 521-584 33-91 (93)
144 2ylm_A Ubiquitin carboxyl-term 30.2 43 0.0015 38.6 5.0 67 176-242 38-111 (530)
145 1oqy_A HHR23A, UV excision rep 29.5 66 0.0022 35.1 6.1 64 174-244 18-85 (368)
146 3shq_A UBLCP1; phosphatase, hy 29.2 52 0.0018 35.1 5.2 64 172-239 13-76 (320)
147 1se9_A Ubiquitin family; ubiqu 27.5 1.4E+02 0.0048 27.1 6.9 63 165-234 19-88 (126)
148 3k9o_B Ubiquitin, UBB+1; E2-25 27.1 2.5E+02 0.0084 23.4 8.4 56 521-583 13-70 (96)
149 2fe8_A PP1AB, ORF1AB, replicas 26.2 85 0.0029 33.3 6.0 75 316-419 99-174 (315)
150 4dbg_A Ranbp-type and C3HC4-ty 25.4 1.2E+02 0.0041 26.6 5.9 45 506-550 23-67 (105)
151 2dzi_A Ubiquitin-like protein 22.3 2.5E+02 0.0085 22.3 7.2 32 521-552 19-50 (81)
152 3v7o_A Minor nucleoprotein VP3 21.5 20 0.00067 35.7 0.0 60 171-237 28-87 (227)
153 3v6c_B Ubiquitin; structural g 21.4 2E+02 0.0067 23.9 6.5 42 505-550 17-58 (91)
154 3ny5_A Serine/threonine-protei 21.2 3.3E+02 0.011 23.3 7.5 46 165-211 16-61 (96)
155 1qmy_A Protease, leader protea 21.0 65 0.0022 29.7 3.3 35 859-895 109-145 (167)
156 4a3p_A Ubiquitin carboxyl-term 20.6 2.5E+02 0.0087 27.8 8.1 63 520-582 140-204 (217)
157 4eew_A Large proline-rich prot 20.6 2E+02 0.0069 23.5 6.3 41 506-550 18-58 (88)
158 2cr8_A MDM4 protein; ZF-ranbp 20.2 31 0.0011 25.9 0.8 14 780-793 8-21 (53)
159 2kk8_A Uncharacterized protein 20.2 2.2E+02 0.0077 23.3 6.5 31 521-551 22-52 (84)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-76 Score=671.47 Aligned_cols=357 Identities=61% Similarity=1.068 Sum_probs=320.8
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002408 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (927)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..++.+..+.++.+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999987 666777788888889999999999999999888999999999
Q ss_pred HHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEE
Q 002408 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (927)
Q Consensus 394 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (927)
.+++...+.|.+++||||||||.+|||.||+++++..++++.+..+.++.++...|.+.|..+..++.++|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 474 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
++++|..|+++|.++|+|++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999865321100000
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
|.+. ......++|++||+.|+++|.|+++|.|+|++|++++
T Consensus 201 ---------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~ 241 (367)
T 2y6e_A 201 ---------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQ 241 (367)
T ss_dssp ------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEE
T ss_pred ---------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCc
Confidence 0000 0002346999999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEE
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYA 873 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~ 873 (927)
.|+|++.|+++|+||+||||||.++++.+.|+++.|+||++.|||++|+..+......|+|+|||+|.|++++||||||+
T Consensus 242 ~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~ 321 (367)
T 2y6e_A 242 QATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321 (367)
T ss_dssp CCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred eEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEE
Confidence 99999999999999999999999998888999999999977899999999877677899999999999999999999999
Q ss_pred EeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCC
Q 002408 874 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913 (927)
Q Consensus 874 k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~ 913 (927)
|+..+++||.|||+.|+++++++|.+.+||||||+|++.+
T Consensus 322 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp ECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred EcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 9877899999999999999999999999999999999865
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=3.1e-73 Score=649.63 Aligned_cols=338 Identities=48% Similarity=0.880 Sum_probs=306.7
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002408 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (927)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..++.+..+.++.+|+.|++.||.+....++|..|+
T Consensus 58 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~i~P~~f~ 137 (396)
T 2gfo_A 58 SGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFK 137 (396)
T ss_dssp SSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSCEEEECCHHHH
T ss_pred CCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCCCceECHHHHH
Confidence 4689999999999999999999999999999999986 556667777777788999999999999999888899999999
Q ss_pred HHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEE
Q 002408 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (927)
Q Consensus 394 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (927)
.+++...+.|.+++||||||||.+|||.||+++++...+++....+.++.++...|...|..+...+.++|.++|+|+++
T Consensus 138 ~~l~~~~~~f~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s~I~~lF~G~l~ 217 (396)
T 2gfo_A 138 ITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFK 217 (396)
T ss_dssp HHHHHHCGGGSSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhchhhcCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhhhccCCccchhhCcEEE
Confidence 99999999999999999999999999999999988776666666666777788889999999999999999999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 474 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
++++|..|+++|.++|+|++|+|+||...
T Consensus 218 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~--------------------------------------------------- 246 (396)
T 2gfo_A 218 STVQCLTCHKKSRTFEAFMYLSLPLASTS--------------------------------------------------- 246 (396)
T ss_dssp EEEEETTTCCEEEEEEEESSEEECCSCSS---------------------------------------------------
T ss_pred EEEEeCCCCceecccccceeeeecccccc---------------------------------------------------
Confidence 99999999999999999999999997321
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 247 -------------------------------------------------------------------------------- 246 (396)
T 2gfo_A 247 -------------------------------------------------------------------------------- 246 (396)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
.++|++||+.|+++|.|+++|.|+|++|++++
T Consensus 247 ------------------------------------------------~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~ 278 (396)
T 2gfo_A 247 ------------------------------------------------KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARR 278 (396)
T ss_dssp ------------------------------------------------EEEHHHHHHHHTSCEEECSTTCEEETTTTEEE
T ss_pred ------------------------------------------------cCCHHHHHHHhCCcccccCCcccccCCccccc
Confidence 12799999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEE
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYA 873 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~ 873 (927)
.|+|++.|+++|+||+||||||.+++.++.|+++.|.||++.|||++|+..+......|+|+|||+|.|++++|||+||+
T Consensus 279 ~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v 358 (396)
T 2gfo_A 279 DSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYC 358 (396)
T ss_dssp CEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEE
T ss_pred ceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCCCceEEEE
Confidence 99999999999999999999999998778999999999987899999998766566889999999999999999999999
Q ss_pred EeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEec
Q 002408 874 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 911 (927)
Q Consensus 874 k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~ 911 (927)
|+..+++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 359 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 359 KNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp EETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred cCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 98778999999999999999999999999999999975
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.1e-69 Score=610.64 Aligned_cols=341 Identities=42% Similarity=0.771 Sum_probs=306.4
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHh-cCCCCccChHH
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLW-SSGRAAVAPRA 391 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~i~p~~ 391 (927)
+..+|++||.|+||||||||+||||+|+|+||+++++. +....+.. .....+++.+|+.|+..|| .+....++|..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~ 81 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG--SNAHTALVEEFAKLIQTIWTSSPNDVVSPSE 81 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS--CCTTHHHHHHHHHHHHHHTTCCTTCEECCHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC--CCcccHHHHHHHHHHHHHHcCCCCCccCHHH
Confidence 45789999999999999999999999999999999876 44333322 2346789999999999999 56678999999
Q ss_pred HHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEE
Q 002408 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQ 471 (927)
Q Consensus 392 ~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~ 471 (927)
|+.+++...+.|.+++||||||||.+|||.||+++++...++.....+.+..++.+.+...|..+..++.++|.++|.|+
T Consensus 82 ~~~~l~~~~~~f~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~i~~~F~g~ 161 (348)
T 3nhe_A 82 FKTQIQRYAPRFVGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYLEREDSRIGDLFVGQ 161 (348)
T ss_dssp HHHHHHHHSGGGSSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHHTTCCCHHHHHHCEE
T ss_pred HHHHHHHhhhhhCCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHhhcCCccccccceE
Confidence 99999999999999999999999999999999999988777766666667778888899999999999999999999999
Q ss_pred EEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCce
Q 002408 472 YKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (927)
Q Consensus 472 ~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l 551 (927)
++++++|..|++.+.++|+|++|+|+||...
T Consensus 162 ~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~------------------------------------------------- 192 (348)
T 3nhe_A 162 LKSSLTCTDCGYCSTVFDPFWDLSLPIAKRG------------------------------------------------- 192 (348)
T ss_dssp EEEEEEETTTCCEEEEEEEESSEEECCCSSC-------------------------------------------------
T ss_pred EEEEEEcCCCCCEeeeeccceEEeeeCCCcc-------------------------------------------------
Confidence 9999999999999999999999999997321
Q ss_pred EEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCC
Q 002408 552 LLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEH 631 (927)
Q Consensus 552 ~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~ 631 (927)
T Consensus 193 -------------------------------------------------------------------------------- 192 (348)
T 3nhe_A 193 -------------------------------------------------------------------------------- 192 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCC
Q 002408 632 LSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPI 711 (927)
Q Consensus 632 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (927)
T Consensus 193 -------------------------------------------------------------------------------- 192 (348)
T 3nhe_A 193 -------------------------------------------------------------------------------- 192 (348)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcc
Q 002408 712 QKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKE 791 (927)
Q Consensus 712 ~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~ 791 (927)
...++|++||+.|+++|.|+++|+|+|++|++
T Consensus 193 ------------------------------------------------~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~ 224 (348)
T 3nhe_A 193 ------------------------------------------------YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRG 224 (348)
T ss_dssp ------------------------------------------------SSCEEHHHHHHHHHSCEEECGGGCCEETTTTE
T ss_pred ------------------------------------------------cCCCCHHHHHHHhcCceEecCCCceECCCCCC
Confidence 11248999999999999999999999999999
Q ss_pred cceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEE
Q 002408 792 HRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTA 871 (927)
Q Consensus 792 ~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtA 871 (927)
++.|+|++.|+++|+||+||||||.+++....|+.+.|.||++.|||++|+.... ....|+|+|||+|.|+..+|||+|
T Consensus 225 ~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~-~~~~Y~L~avv~H~G~~~~GHY~~ 303 (348)
T 3nhe_A 225 RKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENT-NHAVYNLYAVSNHSGTTMGGHYTA 303 (348)
T ss_dssp ECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTC-CCCEEEEEEEEEEEECSSCEEEEE
T ss_pred cccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCC-CCCcEEEEEEEEccCCCCCcccEE
Confidence 9999999999999999999999999988888999999999987899999997654 457899999999999999999999
Q ss_pred EEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCCc
Q 002408 872 YAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 914 (927)
Q Consensus 872 y~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~~ 914 (927)
|+|++.+++||.|||+.|+++++++|.+.+||||||+|++...
T Consensus 304 ~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 304 YCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 346 (348)
T ss_dssp EEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC---
T ss_pred EEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCCC
Confidence 9998778999999999999999999999999999999998653
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=2.2e-68 Score=601.79 Aligned_cols=337 Identities=39% Similarity=0.681 Sum_probs=283.0
Q ss_pred CCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCC-CccChHHHHH
Q 002408 317 GGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGR-AAVAPRAFKG 394 (927)
Q Consensus 317 ~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-~~i~p~~~~~ 394 (927)
.|++||.|+||||||||+||||+|+|+|+++|++. +...... .+...+++.+|+.|+..||.... .+++|..|+.
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~---~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~ 77 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG---GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRA 77 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC---------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC---CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Confidence 38999999999999999999999999999999875 2222221 12345799999999999998754 7899999999
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccc---------------cCCCCCChHHHHHHHHHhhccc
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEM---------------KDSGGRPDEEVANECWKNHKAR 459 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~---------------~~~~~~~~~~~a~~~w~~~~~~ 459 (927)
+++...+.|.+++||||||||.+|||.||++++...++..... .......+.+.+...|..+..+
T Consensus 78 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (355)
T 3i3t_A 78 VFQKYVPSFSGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLER 157 (355)
T ss_dssp HHHHHCGGGCSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhCCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999987654322111 1122334566788899999999
Q ss_pred CCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHH
Q 002408 460 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 539 (927)
Q Consensus 460 ~~sii~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l 539 (927)
+.++|.++|.|+++++++|..|++.+.++|+|++|+|+||....
T Consensus 158 ~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~------------------------------------ 201 (355)
T 3i3t_A 158 EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGF------------------------------------ 201 (355)
T ss_dssp CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC---------------------------------------
T ss_pred cCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCcccc------------------------------------
Confidence 99999999999999999999999999999999999999984310
Q ss_pred HhhcCCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceee
Q 002408 540 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 619 (927)
Q Consensus 540 ~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 619 (927)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEE
Q 002408 620 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 699 (927)
Q Consensus 620 g~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (927)
T Consensus 202 -------------------------------------------------------------------------------- 201 (355)
T 3i3t_A 202 -------------------------------------------------------------------------------- 201 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccC
Q 002408 700 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 779 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~ 779 (927)
....++|++||+.|+++|.|+
T Consensus 202 -----------------------------------------------------------~~~~~sl~~~L~~~~~~e~l~ 222 (355)
T 3i3t_A 202 -----------------------------------------------------------AGGKVSLRDCFNLFTKEEELE 222 (355)
T ss_dssp ---------------------------------------------------------------CBHHHHHHHHHCCEEEC
T ss_pred -----------------------------------------------------------ccCccCHHHHHHHhCCccccC
Confidence 012358999999999999999
Q ss_pred CCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEE
Q 002408 780 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISN 859 (927)
Q Consensus 780 ~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~ 859 (927)
++|+|+|++|++++.|+|++.|+++|+||+||||||.++++...|+++.|+||++.|||++|+.... ....|+|+|||+
T Consensus 223 ~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~ 301 (355)
T 3i3t_A 223 SENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCN 301 (355)
T ss_dssp GGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEE
T ss_pred CCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEE
Confidence 9999999999999999999999999999999999999998888999999999998899999997654 457899999999
Q ss_pred eeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCCc
Q 002408 860 HYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKT 914 (927)
Q Consensus 860 H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~~ 914 (927)
|.|++++||||||+|. .++||.|||+.|+++++++|.+.+||||||+|++..+
T Consensus 302 H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 302 HSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred ecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence 9999999999999996 6779999999999999999999999999999997653
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6e-63 Score=556.48 Aligned_cols=298 Identities=26% Similarity=0.420 Sum_probs=255.9
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002408 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (927)
..+|++||.|+||||||||+||||+|+|+||++|+..-... .....++..+|+.||..|+.+. .++.|..|+.
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~ 74 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT------SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC------CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHh
Confidence 46799999999999999999999999999999997641110 1123468899999999999854 5789999988
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEE
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (927)
+++ .+.|.++.||||||||.+|||.||++++.. ...++|.++|+|++++
T Consensus 75 ~~~--~~~~~~~~QqDA~EFl~~LLd~L~~~~~~~-----------------------------~~~s~i~~~F~g~~~~ 123 (353)
T 1nb8_A 75 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMVS 123 (353)
T ss_dssp HHT--CCBTTTTTTSCHHHHHHHHHHHHHHHTTTS-----------------------------TTTTHHHHHHCEEEEE
T ss_pred hcC--CCCCCcccchhHHHHHHHHHHHHHHHhcCC-----------------------------CccchhhhhceeEEEE
Confidence 875 377999999999999999999999987531 1246799999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEE
Q 002408 475 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (927)
Q Consensus 475 ~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 554 (927)
+++|..|++.|.++|+|++|+|+||..
T Consensus 124 ~i~C~~C~~~s~~~e~f~~LsL~i~~~----------------------------------------------------- 150 (353)
T 1nb8_A 124 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 150 (353)
T ss_dssp EEEESSSCCEEEEEEEESCEEECCTTC-----------------------------------------------------
T ss_pred EEEeccCCCeeceeeeeEEEEEEECCC-----------------------------------------------------
Confidence 999999999999999999999998621
Q ss_pred EEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCH
Q 002408 555 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 634 (927)
Q Consensus 555 e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 634 (927)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccC
Q 002408 635 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714 (927)
Q Consensus 635 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (927)
T Consensus 151 -------------------------------------------------------------------------------- 150 (353)
T 1nb8_A 151 -------------------------------------------------------------------------------- 150 (353)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccce
Q 002408 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (927)
Q Consensus 715 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (927)
.+|.+||+.|+.+|.|+++|+|+|+.|+ ++.
T Consensus 151 ------------------------------------------------~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~ 181 (353)
T 1nb8_A 151 ------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQE 181 (353)
T ss_dssp ------------------------------------------------SBHHHHHHHHTCCEEECTTTCEECGGGC-EEC
T ss_pred ------------------------------------------------cchHHHHHHhhCccccCCCccccCCcCc-cEe
Confidence 1688999999999999999999999996 688
Q ss_pred EEEEEEeeeCCCeEEEEEeceeeec--ccccccceeeeccCCCcccccccccCC-CCceEEEEEEEEEeeccCCCCeEEE
Q 002408 795 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYTA 871 (927)
Q Consensus 795 a~K~~~I~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~-~~~~~YdL~AVi~H~G~l~~GHYtA 871 (927)
|+|++.|+++|+||+||||||.++. +...|+++.|.||. .|||++|+.... ..+..|+|+|||+|.|++++|||||
T Consensus 182 a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a 260 (353)
T 1nb8_A 182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260 (353)
T ss_dssp EEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCS-EEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEE
T ss_pred eEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCC-eeehhhhhcccCCCCCceEEEEEEEEEeCCCCCcEEEE
Confidence 9999999999999999999999974 45789999999994 899999998643 2457999999999999999999999
Q ss_pred EEEeCCCCCEEEECCceeeecCcCccc---------------CCceEEEEEEEecCC
Q 002408 872 YAKLIDENRWYHFDDSHVSPVSEGDIK---------------TSAAYVLFYRRVKSK 913 (927)
Q Consensus 872 y~k~~~~~~Wy~fnDs~V~~v~~~~V~---------------s~~AYlLFY~R~~~~ 913 (927)
|+|+..+++||.|||+.|+++++++|. +.+||||||+|++..
T Consensus 261 ~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~ 317 (353)
T 1nb8_A 261 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 317 (353)
T ss_dssp EECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTH
T ss_pred EEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchh
Confidence 999777899999999999999988775 368999999999863
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=2.3e-62 Score=562.71 Aligned_cols=322 Identities=25% Similarity=0.393 Sum_probs=258.0
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 395 (927)
..+++||.|+||||||||+||||+|+|+|+++|+... .......+.....+++++|+.||..||.+. .+++|..|+.+
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~~ 88 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYA-GALRASGEMASAQYITAALRDLFDSMDKTS-SSIPPIILLQF 88 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCC-CCC------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHHH
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcc-cccccCCCCCcccHHHHHHHHHHHHHhcCC-CcCChHHHHHH
Confidence 5679999999999999999999999999999998752 111111223346789999999999999865 89999999999
Q ss_pred HHhhCCCCC------CCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCcccccee
Q 002408 396 LARFAPQFS------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQ 469 (927)
Q Consensus 396 l~~~~~~f~------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~ 469 (927)
++...|.|. ++.||||||||.+||+.||++++.....+ ..+..+...|..+...+.++|.++|+
T Consensus 89 l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~----------~~e~~~~~~~~~~~~~~~s~i~~~F~ 158 (404)
T 2ayn_A 89 LHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDS----------VKETDSSSASAATPSKKKSLIDQFFG 158 (404)
T ss_dssp HHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC----------------------------CCHHHHHTC
T ss_pred HHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCc----------ccccchhhhhhhhccccCchhhhhcc
Confidence 999999987 59999999999999999999986543211 01112345677777788899999999
Q ss_pred EEEEEEEEcCCCCCee--eeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCC
Q 002408 470 GQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKI 547 (927)
Q Consensus 470 G~~~s~i~C~~C~~~s--~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~ 547 (927)
|+++++++|..|++++ .++|+|++|+|+||..
T Consensus 159 G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~---------------------------------------------- 192 (404)
T 2ayn_A 159 VEFETTMKCTESEEEEVTKGKENQLQLSCFINQE---------------------------------------------- 192 (404)
T ss_dssp EEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS----------------------------------------------
T ss_pred EEEEEEEEecCCCCccCceeeccCceEEeecCCC----------------------------------------------
Confidence 9999999999999995 7999999999998621
Q ss_pred CCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEe
Q 002408 548 DEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYL 627 (927)
Q Consensus 548 ~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~ 627 (927)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCc
Q 002408 628 EEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISS 707 (927)
Q Consensus 628 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (927)
T Consensus 193 -------------------------------------------------------------------------------- 192 (404)
T 2ayn_A 193 -------------------------------------------------------------------------------- 192 (404)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCc
Q 002408 708 CKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCP 787 (927)
Q Consensus 708 ~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~ 787 (927)
..+|++||+.|+.+| +. |+|+
T Consensus 193 ------------------------------------------------------~~~l~~~L~~~~~e~-l~----~~c~ 213 (404)
T 2ayn_A 193 ------------------------------------------------------VKYLFTGLKLRLQEE-IT----KQSP 213 (404)
T ss_dssp ------------------------------------------------------CCBHHHHHHHTTEEC-CC----CEET
T ss_pred ------------------------------------------------------cccHHHHHHHhcccc-ee----ecch
Confidence 016899999998744 42 8999
Q ss_pred cCcccceEEEEEEeeeCCCeEEEEEeceeeecc--cccccceeeeccCCCcccccccccC--------------------
Q 002408 788 QCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSK-------------------- 845 (927)
Q Consensus 788 ~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~-------------------- 845 (927)
+|++.+.|+|++.|+++|+||+||||||.++.. ...|+++.|.||. .|||++|+...
T Consensus 214 ~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (404)
T 2ayn_A 214 TLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPL-MLDMYELCTPELQEKMVSFRSKFKDLEDKKV 292 (404)
T ss_dssp TTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCS-EEECGGGBCHHHHHHTTTTTGGGTCTTC---
T ss_pred hhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCc-eeEHhHhcChhhhhhcchhhhHHhhhhcccc
Confidence 999999999999999999999999999999853 5689999999995 89999998641
Q ss_pred -----------------------------CCCceEEEEEEEEEeec-cCCCCeEEEEEEeCCCCCEEEECCceeeecCcC
Q 002408 846 -----------------------------DGESYVYDLFAISNHYG-GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEG 895 (927)
Q Consensus 846 -----------------------------~~~~~~YdL~AVi~H~G-~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~ 895 (927)
......|+|+|||+|.| ++++|||+||+|+ .+++||.|||+.|++++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~~~ 371 (404)
T 2ayn_A 293 NQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPE 371 (404)
T ss_dssp -------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBCHH
T ss_pred hhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecCHH
Confidence 11347899999999999 7999999999997 5899999999999999999
Q ss_pred cccCCc-------eEEEEEEEecCCchh
Q 002408 896 DIKTSA-------AYVLFYRRVKSKTKA 916 (927)
Q Consensus 896 ~V~s~~-------AYlLFY~R~~~~~~~ 916 (927)
+|.... ||||||+|++.+...
T Consensus 372 ~v~~~~~g~~~~~aYiLfY~r~~~~~~~ 399 (404)
T 2ayn_A 372 DILRLSGGGDWHIAYVLLYGPRRVEIME 399 (404)
T ss_dssp HHGGGGSSSSSCEEEEEEEECC------
T ss_pred HHHhhhCCCCCceEEEEEEEecCCCCCC
Confidence 998765 999999999876443
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1e-60 Score=560.42 Aligned_cols=316 Identities=31% Similarity=0.624 Sum_probs=265.5
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCC--------
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGR-------- 384 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~-------- 384 (927)
...+|++||.|+||||||||+||||+|+|+|+++|+.. +.......+ ...++.++|..++..||....
T Consensus 136 ~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~---~~~~l~~~l~~l~~~l~~~~~~~~~~~~~ 212 (476)
T 3mhs_A 136 ERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRS---PDKCFSCALDKIVHELYGALNTKQASSSS 212 (476)
T ss_dssp GGTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCC---TTTCHHHHHHHHHHHHHSCCCC-------
T ss_pred cCCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCC---cccchHHHHHHHHHHHhhccccccccccc
Confidence 45789999999999999999999999999999999865 221222222 245689999999999997432
Q ss_pred -CccChHHHHHHH---HhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccC
Q 002408 385 -AAVAPRAFKGKL---ARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARN 460 (927)
Q Consensus 385 -~~i~p~~~~~~l---~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~ 460 (927)
..+.|..++..+ ++..+.|.+++||||||||.+||+.||++++....+. .+.+.......
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~----------------~~~~~~~~~~~ 276 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDLPNA----------------KEVSRANNKQC 276 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHHHHHHHHHHHHHHHHCCC-----------------------CCCSC
T ss_pred ccccCcchHHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHHHHHHhhccccc----------------ccccccccccC
Confidence 256676666555 4889999999999999999999999999987654321 11122233456
Q ss_pred CCccccceeEEEEEEEEcCCCCCeee-eecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHH
Q 002408 461 DSLIVDVFQGQYKSTLVCPVCSKVSI-TFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILAL 539 (927)
Q Consensus 461 ~sii~~lF~G~~~s~i~C~~C~~~s~-~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l 539 (927)
.++|.++|+|+++++++|..|+++|. ++|+|++|+|+||..
T Consensus 277 ~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~~-------------------------------------- 318 (476)
T 3mhs_A 277 ECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDK-------------------------------------- 318 (476)
T ss_dssp CSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTTC--------------------------------------
T ss_pred CCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhhh--------------------------------------
Confidence 78999999999999999999999974 599999999998621
Q ss_pred HhhcCCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceee
Q 002408 540 STACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLF 619 (927)
Q Consensus 540 ~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 619 (927)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEE
Q 002408 620 GAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLS 699 (927)
Q Consensus 620 g~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (927)
T Consensus 319 -------------------------------------------------------------------------------- 318 (476)
T 3mhs_A 319 -------------------------------------------------------------------------------- 318 (476)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccC
Q 002408 700 LTDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLG 779 (927)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~ 779 (927)
.+|++||+.|+++|.|+
T Consensus 319 ---------------------------------------------------------------~sl~~~L~~~~~~E~l~ 335 (476)
T 3mhs_A 319 ---------------------------------------------------------------KKLYECLDSFHKKEQLK 335 (476)
T ss_dssp ---------------------------------------------------------------CBHHHHHHHHHCCEECS
T ss_pred ---------------------------------------------------------------hHHHHHHHHhcChhhcc
Confidence 27999999999999998
Q ss_pred CCCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeee-cccccccceeeeccCCCcccccccccCCC---------Cc
Q 002408 780 PDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYS-RYLKNKLDTFVNFPILNLDLSKYMKSKDG---------ES 849 (927)
Q Consensus 780 ~~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~-~~~~~Ki~~~V~FPl~~LDls~~~~~~~~---------~~ 849 (927)
+++ |+|++|++.+.|+|++.|+++|+||+||||||.++ .+...|+++.|.|| ..|||++|+..... ..
T Consensus 336 ~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~ 413 (476)
T 3mhs_A 336 DFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENGKVPD 413 (476)
T ss_dssp SCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCCBCCC
T ss_pred CCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCcccccccccccCCCC
Confidence 655 99999999999999999999999999999999987 45678999999999 48999999986432 45
Q ss_pred eEEEEEEEEEeeccCCCCeEEEEEEeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecC
Q 002408 850 YVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKS 912 (927)
Q Consensus 850 ~~YdL~AVi~H~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~ 912 (927)
..|+|+|||+|.|++++|||+||+|. .+++||.|||+.|+++++++|.+..||||||+|++.
T Consensus 414 ~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 414 IIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp EEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred CcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 78999999999999999999999985 578999999999999999999999999999999863
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=6.1e-60 Score=544.27 Aligned_cols=297 Identities=25% Similarity=0.382 Sum_probs=250.6
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCC----chhHHHHHHHHHHHHHhcCCCCccCh
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLG----MHGELALAFGDLLRKLWSSGRAAVAP 389 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~----~~~~l~~~l~~L~~~l~~~~~~~i~p 389 (927)
....+++||.|+||||||||+||||+|+|+||++|+.... ..+..++.+ ...+++++|+.||..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNP-SQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCG-GGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhccc-ccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 4567899999999999999999999999999999987521 122222111 25689999999999999988899999
Q ss_pred HHHHHHHHhhCCCCC-------CCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCC
Q 002408 390 RAFKGKLARFAPQFS-------GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDS 462 (927)
Q Consensus 390 ~~~~~~l~~~~~~f~-------~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~s 462 (927)
..|+.+++...|.|. ++.||||||||.+||+.|+++++. +
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------------------~ 144 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------------------K 144 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH---------------------------------H
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc---------------------------------c
Confidence 999999999999998 899999999999999999999842 4
Q ss_pred ccccceeEEEEEEEEcCCCCCee--eeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHH
Q 002408 463 LIVDVFQGQYKSTLVCPVCSKVS--ITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALS 540 (927)
Q Consensus 463 ii~~lF~G~~~s~i~C~~C~~~s--~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~ 540 (927)
+|.++|+ +++++++|..|++++ .++|+|++|+|+||..
T Consensus 145 ~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~--------------------------------------- 184 (415)
T 1vjv_A 145 FSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT--------------------------------------- 184 (415)
T ss_dssp HHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT---------------------------------------
T ss_pred hHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc---------------------------------------
Confidence 6899999 999999999999987 5999999999998621
Q ss_pred hhcCCCCCCceEEEEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeec
Q 002408 541 TACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFG 620 (927)
Q Consensus 541 ~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg 620 (927)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEecCCCCCHHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEE
Q 002408 621 APLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSL 700 (927)
Q Consensus 621 ~P~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (927)
T Consensus 185 -------------------------------------------------------------------------------- 184 (415)
T 1vjv_A 185 -------------------------------------------------------------------------------- 184 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccCCCccCCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCC
Q 002408 701 TDERISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGP 780 (927)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~ 780 (927)
..+|++||+.|+.+| +.
T Consensus 185 -------------------------------------------------------------~~~l~~~L~~~~~e~-i~- 201 (415)
T 1vjv_A 185 -------------------------------------------------------------TNFMRNGLLEGLNEK-IE- 201 (415)
T ss_dssp -------------------------------------------------------------CCBHHHHHHHHHEEC----
T ss_pred -------------------------------------------------------------cchHHHHHHHHhhhh-hh-
Confidence 016899999999854 32
Q ss_pred CCCCCCccCcccceEEEEEEeeeCCCeEEEEEeceeeecc--cccccceeeeccCCCcccccccccC-------------
Q 002408 781 DDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRY--LKNKLDTFVNFPILNLDLSKYMKSK------------- 845 (927)
Q Consensus 781 ~n~w~C~~Ck~~~~a~K~~~I~~lP~iLiIhLKRF~~~~~--~~~Ki~~~V~FPl~~LDls~~~~~~------------- 845 (927)
|+|+.|++.+.|+|++.|+++|+||+||||||.++.. ...|+++.|.||. .|||++|+...
T Consensus 202 ---~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~r~~~~ 277 (415)
T 1vjv_A 202 ---KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPF-QLDVADMLTPEYAAEKVKVRDELR 277 (415)
T ss_dssp ----------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCS-EEECGGGBCHHHHHHHHHHHHHHH
T ss_pred ---hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCc-EeEhHHhcChhhhhhhhhhHHHHH
Confidence 8999999999999999999999999999999999853 5699999999995 89999998631
Q ss_pred --------------------------------------------------------------CCCceEEEEEEEEEeec-
Q 002408 846 --------------------------------------------------------------DGESYVYDLFAISNHYG- 862 (927)
Q Consensus 846 --------------------------------------------------------------~~~~~~YdL~AVi~H~G- 862 (927)
......|+|+|||+|.|
T Consensus 278 ~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~ 357 (415)
T 1vjv_A 278 KVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGA 357 (415)
T ss_dssp HHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESS
T ss_pred HHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCC
Confidence 01347899999999999
Q ss_pred cCCCCeEEEEEEe-CCCCCEEEECCceeeecCcCcccCCc-------eEEEEEEEec
Q 002408 863 GLGGGHYTAYAKL-IDENRWYHFDDSHVSPVSEGDIKTSA-------AYVLFYRRVK 911 (927)
Q Consensus 863 ~l~~GHYtAy~k~-~~~~~Wy~fnDs~V~~v~~~~V~s~~-------AYlLFY~R~~ 911 (927)
++++|||+||+|+ ..+++||.|||+.|+++++++|.... ||||||+|++
T Consensus 358 s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 358 NSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp STTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred CCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 7999999999997 67899999999999999999998765 9999999986
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-59 Score=554.19 Aligned_cols=299 Identities=26% Similarity=0.418 Sum_probs=257.9
Q ss_pred CCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002408 314 GEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (927)
Q Consensus 314 ~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (927)
...+|++||.|+||||||||+||||+|+|+||++++..-... .....++..+|+.||..|+.+. .++.|..|+
T Consensus 170 ~~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~------~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~ 242 (522)
T 2f1z_A 170 KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG------DDSSKSVPLALQRVFYELQHSD-KPVGTKKLT 242 (522)
T ss_dssp TTTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS------SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHH
T ss_pred cccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC------CcccchHHHHHHHHHHHHhcCC-CccCcHHHH
Confidence 346789999999999999999999999999999997541110 1123458899999999999854 678999998
Q ss_pred HHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEE
Q 002408 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (927)
Q Consensus 394 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (927)
.+++ .+.|.+++||||||||.+|||.||++++.. ...++|.++|+|+++
T Consensus 243 ~~~~--~~~~~~~~QqDa~Efl~~LLd~L~~~l~~~-----------------------------~~~s~i~~lF~G~~~ 291 (522)
T 2f1z_A 243 KSFG--WETLDSFMQHDVQELCRVLLDNVENKMKGT-----------------------------CVEGTIPKLFRGKMV 291 (522)
T ss_dssp HHTC--CCTTTSSTTSCHHHHHHHHHHHHHHHHTTS-----------------------------TTTTHHHHHHCEEEE
T ss_pred hhcC--CccCCCcccccHHHHHHHHHHHHHhhccCC-----------------------------ccccchhhheeEEEE
Confidence 8765 368999999999999999999999987531 124679999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 474 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
++++|..|++.|.++|+|++|+|+||..
T Consensus 292 s~i~C~~C~~~s~~~e~f~~LsL~i~~~---------------------------------------------------- 319 (522)
T 2f1z_A 292 SYIQCKEVDYRSDRREDYYDIQLSIKGK---------------------------------------------------- 319 (522)
T ss_dssp EEECCSSSCCCCCEEEEESCEEECCTTC----------------------------------------------------
T ss_pred EEEEcCCCCceeeeeeeeEEEEEEeCCc----------------------------------------------------
Confidence 9999999999999999999999998621
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 320 -------------------------------------------------------------------------------- 319 (522)
T 2f1z_A 320 -------------------------------------------------------------------------------- 319 (522)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
.+|.+||+.|+.+|.|+++|+|+|+.|+ ++
T Consensus 320 -------------------------------------------------~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~ 349 (522)
T 2f1z_A 320 -------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEHG-LQ 349 (522)
T ss_dssp -------------------------------------------------CBHHHHHHHHTCEEEECTTSCBCCGGGC-SB
T ss_pred -------------------------------------------------ccchHHHHHhhceeecCCcceeecCcCC-cc
Confidence 1688999999999999999999999996 68
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeeec--ccccccceeeeccCCCcccccccccCC-CCceEEEEEEEEEeeccCCCCeEE
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKD-GESYVYDLFAISNHYGGLGGGHYT 870 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~-~~~~~YdL~AVi~H~G~l~~GHYt 870 (927)
.|+|++.|+++|+||+||||||.++. +...|+++.|+||. .|||++|+.... ..+..|+|+|||+|.|++++||||
T Consensus 350 ~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~-~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~ 428 (522)
T 2f1z_A 350 EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPE-QLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYV 428 (522)
T ss_dssp CEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCS-EEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEE
T ss_pred ceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCC-eecchhhhccccCCCCcEEEEEEEEEecccCCCceEE
Confidence 89999999999999999999999985 45789999999995 899999998643 245799999999999999999999
Q ss_pred EEEEeCCCCCEEEECCceeeecCcCcccC---------------CceEEEEEEEecCC
Q 002408 871 AYAKLIDENRWYHFDDSHVSPVSEGDIKT---------------SAAYVLFYRRVKSK 913 (927)
Q Consensus 871 Ay~k~~~~~~Wy~fnDs~V~~v~~~~V~s---------------~~AYlLFY~R~~~~ 913 (927)
||+|+..+++||.|||+.|+++++++|.. .+||||||+|++..
T Consensus 429 a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~ 486 (522)
T 2f1z_A 429 VYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKL 486 (522)
T ss_dssp EEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSH
T ss_pred EEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCch
Confidence 99997778999999999999999887753 67999999999864
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.9e-58 Score=561.54 Aligned_cols=156 Identities=26% Similarity=0.426 Sum_probs=135.0
Q ss_pred cCCCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCC---------
Q 002408 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSG--------- 383 (927)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~--------- 383 (927)
+...+|++||.|+||||||||+||||+|+|+||++|+.... .....++.....++.++|+.|+..||++.
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~-~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~ 416 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLE-KIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESG 416 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHH-HHHHHCCSCGGGCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhh-hhhccccCCccccHHHHHHHHHHHHhcccccccccccc
Confidence 45678999999999999999999999999999999985421 11112344556789999999999999743
Q ss_pred -----------CCccChHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHH
Q 002408 384 -----------RAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANEC 452 (927)
Q Consensus 384 -----------~~~i~p~~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~ 452 (927)
...++|..|+.+++...+.|.+++||||||||.+||+.||++++.
T Consensus 417 ~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 417 DGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp ------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred ccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHHHHHHHHHHHhcc------------------------
Confidence 458999999999999999999999999999999999999998732
Q ss_pred HHhhcccCCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCC
Q 002408 453 WKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST 501 (927)
Q Consensus 453 w~~~~~~~~sii~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~ 501 (927)
.++|.++|.|+++++++|..|++++.++++|++|+|+||..
T Consensus 473 --------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~ 513 (854)
T 3ihp_A 473 --------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMD 513 (854)
T ss_dssp --------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGG
T ss_pred --------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCcc
Confidence 25689999999999999999999999999999999999853
No 11
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=100.00 E-value=1.7e-37 Score=324.61 Aligned_cols=215 Identities=29% Similarity=0.545 Sum_probs=177.4
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002408 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERP 89 (927)
Q Consensus 10 ~~~~~~~~~~~~~~~e~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p 89 (927)
|-|-|+.....+.++||++|+.+++ .++++|++|||||++||++|++|++++..+. .+ .......|
T Consensus 3 ~~~~~~~~~~p~l~~Qr~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~--~~---------~~~~~~~p 68 (231)
T 3jyu_A 3 MAEGRGSRERPDVETQKTELGALMG---TTLQRGAQWYLIDSRWFKQWKKYVGFDSWDM--YN---------VGEHNLFP 68 (231)
T ss_dssp ------CCCCCCHHHHHHHHHTTTT---CCCCTTCEEEEEEHHHHHHHHHHHTSSSCCT--TT---------TTCGGGCC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhccccccc--cc---------ccccCCCC
Confidence 4455555667899999999999886 5899999999999999999999998764311 00 11123689
Q ss_pred CCCcChhhccCCCCCCCCCcchhccccCCCCcEEEeCHHHHHHHHHHhC---CCCCcceEEeecccccc-eeeeeccceE
Q 002408 90 GPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEGIVNE-KRVEVFXLCL 165 (927)
Q Consensus 90 gpIdNs~L~~~~~~~~~~~~~~Lk~~l~e~~Df~~Vp~~~W~~l~~wYG---~~~~i~R~vi~~~~~~~-~~vElyP~~l 165 (927)
|||||++|++.. ++..||++|.++.||++||+++|++|.+||| |||+|.|+||..+.... ..||+||+.|
T Consensus 69 GPIDNs~L~~~~------~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l 142 (231)
T 3jyu_A 69 GPIDNSGLFSDP------ESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLEL 142 (231)
T ss_dssp CSBCCGGGEEET------TTTEECSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEE
T ss_pred CcEehHHHhCcC------CCcccccccccCCCEEEECHHHHHHHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceE
Confidence 999999999852 2468999999999999999999999999999 88999999999874333 3899999999
Q ss_pred EEEeccCCC-ceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 166 KLIDSRDNS-QTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 166 ~i~~~~~~~-~~~~~iS~~~t~~~l~~~~~~~~~l~~~-~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
+++...+.. ..++.+|+.+|+.+|++++|+.|+|+.+ ++|||++...++. +++.+.++||++++|..+|.||+|++.
T Consensus 143 ~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 143 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 998765543 3457889999999999999999999987 7999999987777 778888899999999999999999995
Q ss_pred cC
Q 002408 244 DN 245 (927)
Q Consensus 244 ~~ 245 (927)
.+
T Consensus 222 ~d 223 (231)
T 3jyu_A 222 ED 223 (231)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 12
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=100.00 E-value=3.4e-37 Score=319.55 Aligned_cols=204 Identities=28% Similarity=0.601 Sum_probs=174.0
Q ss_pred CCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhc
Q 002408 19 PCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDII 98 (927)
Q Consensus 19 ~~~~~~e~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~ 98 (927)
..+.++|+++|+.+++ .++++|++|||||++||++|++||+++..... + .......||||||++|+
T Consensus 3 ~p~l~~Q~~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~--~---------~~~~~~~pGpIdNs~L~ 68 (217)
T 4a3p_A 3 AADLDTQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKY--Q---------MGDQNVYPGPIDNSGLL 68 (217)
T ss_dssp CCCHHHHHHHHHHHTT---CCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCT--T---------TTCGGGCCCSBCCGGGB
T ss_pred CCCHHHHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccc--c---------ccccCCCCCcEehHHhh
Confidence 4588999999999987 58999999999999999999999988653210 0 11123689999999999
Q ss_pred cCCCCCCCCCcchhccccCCCCcEEEeCHHHHHHHHHHhC---CCCCcceEEeecccccceeeeeccceEEEEeccCC-C
Q 002408 99 QNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN-S 174 (927)
Q Consensus 99 ~~~~~~~~~~~~~Lk~~l~e~~Df~~Vp~~~W~~l~~wYG---~~~~i~R~vi~~~~~~~~~vElyP~~l~i~~~~~~-~ 174 (927)
... ....||++|.++.||++||+++|++|.+||| |||+|.|+||..+.. ..||+||+.|+++...+. .
T Consensus 69 ~~~------~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~R~vi~~~~~--~~vEvyP~~l~l~~~~~~~~ 140 (217)
T 4a3p_A 69 KDG------DAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMF--CKVEVYLTELKLCENGNMNN 140 (217)
T ss_dssp CCC---------CBCSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEETTE--EEECCSCEEEEEEETTEEEE
T ss_pred CCC------CCcccCcCcccCCCEEEECHHHHHHHHHHhCCCCCCCCcceeEEecCCe--eEEEEeccEEEEEecCCCCc
Confidence 742 3578999999999999999999999999999 899999999998752 689999999999876554 3
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~-~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (927)
..++.+|+.+|+.+|++++|+.|+|+++ ++|||++...++. +++.+.++||+++.|.++|.||+|++..+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~r~~d 211 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQKNED 211 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-EECCCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-eecCCCCCCHHHhCCCCCCEEEEEEecCC
Confidence 4578899999999999999999999986 7999999877766 77888889999999999999999999543
No 13
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.93 E-value=2.7e-26 Score=248.34 Aligned_cols=99 Identities=19% Similarity=0.262 Sum_probs=80.4
Q ss_pred CccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHH-HHHHHHHhcCCCCccChHHHHHHH
Q 002408 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAF-GDLLRKLWSSGRAAVAPRAFKGKL 396 (927)
Q Consensus 318 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~L~~~l~~~~~~~i~p~~~~~~l 396 (927)
-++||.|+||||||||.||||+++|++.+.++.. ....+. ......+..+| ..++..|.. ..+.|..|+..|
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~-~~~~~~---~~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~~L 80 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLR-PKEKND---VEYYSETQELLRTEIVNPLRI---YGYVCATKIMKL 80 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHC-CCCTTS---CTTHHHHHHHHHHTTHHHHHH---TSEECHHHHHHH
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhC-CCCCCc---chhHHHHHHHHHHHHHHHHhh---cCCCcHHHHHHH
Confidence 4799999999999999999999999999999874 222111 22234688888 899999976 789999999999
Q ss_pred HhhCCCCC-----CCCCCcHHHHHHHHHHHHH
Q 002408 397 ARFAPQFS-----GYNQHDSQELLAFLLDGLH 423 (927)
Q Consensus 397 ~~~~~~f~-----~~~QqDA~Efl~~LLd~L~ 423 (927)
++..|+|. +++||||.||+..||..|.
T Consensus 81 R~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~ 112 (374)
T 2vhf_A 81 RKILEKVEAASGFTSEEKDPEEFLNILFHHIL 112 (374)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHTTTT
T ss_pred HHHhHHHhcccCCCccccCHHHHHHHHHHHHh
Confidence 98888775 3899999999999999886
No 14
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=99.92 E-value=8.9e-25 Score=209.52 Aligned_cols=116 Identities=32% Similarity=0.750 Sum_probs=96.2
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002408 11 MENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPG 90 (927)
Q Consensus 11 ~~~~~~~~~~~~~~e~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 90 (927)
|+.|+ ..+.++|+++|+.+++ .++++|++|||||++||++|++||+++..+.. . ......+||
T Consensus 22 ~~~~~---~p~~e~Qr~~I~~l~~---~~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~--~---------~~~~~~~pG 84 (141)
T 1w6v_A 22 MAEGG---AADLDTQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKY--Q---------MGDQNVYPG 84 (141)
T ss_dssp CCCSS---SCCHHHHHHHHHHHHS---SCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCS--S---------TTCSTTCCC
T ss_pred hccCC---CCCHHHHHHHHHHHHH---cCCCCCCEEEEECHHHHHHHHHHhcCCccccc--c---------ccccCCCCC
Confidence 45555 3588999999999986 47999999999999999999999988653210 0 011236899
Q ss_pred CCcChhhccCCCCCCCCCcchhccccCCCCcEEEeCHHHHHHHHHHhC---CCCCcceEEee
Q 002408 91 PIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMIS 149 (927)
Q Consensus 91 pIdNs~L~~~~~~~~~~~~~~Lk~~l~e~~Df~~Vp~~~W~~l~~wYG---~~~~i~R~vi~ 149 (927)
||||++|+... +...||++|.++.||++||+++|++|.+||| |||+|+|+||.
T Consensus 85 pIDNs~Ll~~~------~~~~Lk~~L~e~~Dy~lVp~~vW~~L~~wYG~~~ggp~I~R~vi~ 140 (141)
T 1w6v_A 85 PIDNSGLLKDG------DAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVE 140 (141)
T ss_dssp SBCCTTTBCSS------CTTCBCSSCCTTTTEEEECHHHHHHHHHHSCBCTTCCCCEEECCC
T ss_pred CCcCHHHhCcC------ccccccccccCCCCEEEECHHHHHHHHHHHCCCCCCCceeEeeec
Confidence 99999999753 2468999999999999999999999999999 89999999985
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.82 E-value=9.7e-08 Score=111.42 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=126.6
Q ss_pred CCCccccceeEEEEEEEEcCCCCCeeeeecCCeeEeecCCCC---ceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHH
Q 002408 460 NDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPST---VTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 536 (927)
Q Consensus 460 ~~sii~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~ip~~---~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~ 536 (927)
.++.+.++|. ...|+ +.++|.+..|+||.. +.+.+.|+++. ....+..+.+.++|+++++||+
T Consensus 303 ~~~~L~d~l~--------~~~~~----~~~~l~YevL~ipl~ElE~~r~~kv~w~~--~~~~~~~~~l~vpK~gtV~Dll 368 (530)
T 2ylm_A 303 YEGTLRDLLQ--------FFKPR----QPKKLYYQQLKMKITDFENRRSFKCIWLN--SQFREEEITLYPDKHGCVRDLL 368 (530)
T ss_dssp CCSCHHHHST--------TSCSS----SCCEEEEEECSSCHHHHHSBCCEEEEEEC--TTSCEEEEEECCBTTCBHHHHH
T ss_pred CCCcHHHHhh--------cccCC----CCCeEEEEECCCCHHHHhhCceEEEEEEC--CCCceEEEEEEcCCCCCHHHHH
Confidence 3456778772 23444 468999999999988 78888888773 3334568999999999999999
Q ss_pred HHHHhhcCCCC--CCceEEEEEeCCeeEEeecCCcccccccCC--CCeEEEEEecCC-----CCCceEEEEeeecccccc
Q 002408 537 LALSTACCLKI--DEGLLLAEVYNHQIFRFFENPAELISSIKD--DEHIVAYRFDRK-----QGGKIKLEIVNRWQEKSA 607 (927)
Q Consensus 537 ~~l~~~~~~~~--~~~l~~~e~~~~~~~~~~~d~~~~~~~i~~--~d~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 607 (927)
+++++..++.+ ...+.+.|+++++|++++.+ +..++.|.+ ...+.++++|.. .++...++++|...+.
T Consensus 369 ~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~-~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~-- 445 (530)
T 2ylm_A 369 EECKKAVELGEKASGKLRLLEIVSYKIIGVHQE-DELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEV-- 445 (530)
T ss_dssp HHHHTTCCCCTTCCCCEEEEEEETTEEEEEECT-TSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSST--
T ss_pred HHHHHhcCCCcCCcccEEEEEEECCEEEEecCC-CcccccccccccceEEEEECCHHHhccCCCCcEEEEEEEeccCc--
Confidence 99999998863 67899999999999999985 457888877 788999999975 4455678888875322
Q ss_pred cccccCCCceeecccEEEEecCCCCCHHHHHHHHHHhcc
Q 002408 608 SDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLS 646 (927)
Q Consensus 608 ~~~~~~~~~~~fg~P~~~~~~~~~~~~~~i~~~~~~~~~ 646 (927)
...||.||++.+.... +..+++..+.+++.
T Consensus 446 --------~~~~G~PF~~~v~~gE-t~~~~k~Rl~~rlg 475 (530)
T 2ylm_A 446 --------FGTFGIPFLLRIHQGE-HFREVMKRIQSLLD 475 (530)
T ss_dssp --------TCEEEEEEEEEEETTC-CHHHHHHHHHHHHC
T ss_pred --------ccccCCCeEEEecCCC-cHHHHHHHHHHHhC
Confidence 2479999999997433 88888888887764
No 16
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=92.33 E-value=0.27 Score=42.21 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=51.0
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE-EEE
Q 002408 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI-LLE 240 (927)
Q Consensus 176 ~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i-lve 240 (927)
..+.++...|+.+|++++....|++++.-||.-+.........+.+.+++|.++++..+..| |++
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEe
Confidence 46889999999999999999999999999998654332221233445799999999998877 555
No 17
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=92.16 E-value=0.92 Score=39.77 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=49.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
...+.+....|+.+|++++....+++++.-||.-.....+....|.+.+++|.++++..+-.|.|
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 46789999999999999999999999999999754321111122345579999999998877654
No 18
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.67 E-value=0.62 Score=40.77 Aligned_cols=68 Identities=10% Similarity=0.024 Sum_probs=54.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcc-cccCCCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQR-STSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~-~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.......+....|+.+|+.++...+++++.+.||.-+..... ....+.+..++|..+++.++..|.|+
T Consensus 22 ~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 22 RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 335567889999999999999999999999999986643222 11335677899999999999999887
No 19
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=91.32 E-value=0.78 Score=40.07 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=49.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
...+.+....|+.+|++++....+++++.-||.-...+... ..+.+.+++|.++++..+-.|.|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~-~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCV-STMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEE-EECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCccc-ceeCCCCCCHhHCCcCCCCEEEE
Confidence 46788999999999999999999999999999754311111 12334578999999998877654
No 20
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.16 E-value=0.89 Score=39.56 Aligned_cols=73 Identities=10% Similarity=0.185 Sum_probs=53.5
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
++|++........+.++..+|+.+|++++....+++++..||. |.+ ..|.+.+++|.++++..+..|.+-++.
T Consensus 16 ~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 16 IHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YSG-----IELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ETT-----EEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECC-----EECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 3344333333567889999999999999999999999999986 322 234443389999999988777666553
No 21
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=91.12 E-value=0.61 Score=41.46 Aligned_cols=73 Identities=12% Similarity=0.064 Sum_probs=50.6
Q ss_pred eecc---ceEEEEeccC---CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhcc
Q 002408 159 EVFX---LCLKLIDSRD---NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 232 (927)
Q Consensus 159 ElyP---~~l~i~~~~~---~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~ 232 (927)
+.|| +.++++.... .....+.+...+|+.+|++++...++++++.-| |.+.. .++ +.++||.++++.
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~gg-----kll-~D~~TL~~ygI~ 88 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQ-----RLA-RDQETLHSHGVR 88 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETT-----EEE-CTTCBTGGGTCC
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccC-----eEc-cCcCcHHHcCCC
Confidence 4455 3455544332 245678889999999999999999999999888 76633 233 347899999994
Q ss_pred -CCceEE
Q 002408 233 -MDQDIL 238 (927)
Q Consensus 233 -~~q~il 238 (927)
.+..+.
T Consensus 89 ~~G~t~h 95 (105)
T 4dbg_A 89 QNGDSAY 95 (105)
T ss_dssp STTCEEE
T ss_pred CCCCEEE
Confidence 666553
No 22
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=90.88 E-value=0.94 Score=39.21 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=53.3
Q ss_pred eeeccceEEEEec-cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCce
Q 002408 158 VEVFXLCLKLIDS-RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236 (927)
Q Consensus 158 vElyP~~l~i~~~-~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 236 (927)
|--.|+.++|+.. .......+.+...+|+.+|++++....++++++.||+. .+ ..+.| ..||.|+++..+..
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~G-----k~LkD-~~TL~dY~I~dgst 87 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GG-----SVLKD-HISLEDYEVHDQTN 87 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TT-----EECCT-TSBTGGGTCCTTCE
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CC-----EEccC-cCCHHHcCCCCCCE
Confidence 3445667777765 34556678999999999999999999999999999973 22 22343 68999999998765
Q ss_pred E
Q 002408 237 I 237 (927)
Q Consensus 237 i 237 (927)
+
T Consensus 88 L 88 (93)
T 3plu_A 88 L 88 (93)
T ss_dssp E
T ss_pred E
Confidence 4
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=88.77 E-value=1.9 Score=35.22 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=49.8
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++.+..+++++..||. |. + ..+.+ +++|.++++..+..+.+-++
T Consensus 10 g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~----g-~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLED-GRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-eECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 34457888999999999999999999999998886 32 2 23333 68999999998888777655
No 24
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=88.77 E-value=2.5 Score=35.01 Aligned_cols=64 Identities=13% Similarity=0.256 Sum_probs=49.9
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++..+|+.+|++++....+++++..||. |.+ ..+.+ +++|.++++..+..+.+-++
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G-----~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEG-----KPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE-ECC-----EECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 344567889999999999999999999999988876 322 23343 68999999998887766544
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=88.72 E-value=1.4 Score=37.04 Aligned_cols=64 Identities=16% Similarity=0.302 Sum_probs=50.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
.....+.++..+|+.+|++++.+..+++++..||. |.. ..+. .+++|.++.+..+..+.+-++.
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-ECC-----EECC-CCCCHHHcCCCCCCEEEEEEEC
Confidence 34567889999999999999999999999998887 322 2333 3689999999988877776553
No 26
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=88.52 E-value=1.7 Score=37.68 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=52.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (927)
.....+.++..+|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++..+..|.+-++..+
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G-----~~L~-d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-ECC-----EECC-CCCcHHHcCCCCCCEEEEEEEcCC
Confidence 34567889999999999999999999999998887 322 2333 368999999998888877766443
No 27
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=87.91 E-value=1.4 Score=37.70 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
......+.++...|+.+|++++.+..+++++..||. |. + ..+.+ +++|.++++..+..|.+-++.
T Consensus 18 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----G-k~L~D-~~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 18 TGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FA----G-KQLED-GRTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ET----T-EECCT-TSBSGGGTCCTTCEEEEEC--
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE-EC----C-EECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 334567888999999999999999999999998886 32 2 23343 689999999988877766553
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=87.89 E-value=1.4 Score=37.03 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=50.1
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
....+.++..+|+.+|++++.+..+++++..||+- . + ..+. .+++|.++.+..+..|.+-++.
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~-~----g-~~L~-d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF-A----G-KQLE-DGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE-T----B-EECC-TTCBTTTTTCCTTCEEEEEECC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE-C----C-eECC-CCCCHHHCCCCCCCEEEEEEec
Confidence 34578889999999999999999999999998873 2 2 2333 3679999999988887776654
No 29
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=87.78 E-value=2 Score=35.32 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=48.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
......+.++...|+.+|++++....+++++..||. |.+ ..+.+ +++|.++++..+..|.+-
T Consensus 12 ~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~g-----k~L~d-~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 12 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSG-----KILKD-DQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECCT-TSBTGGGTCCTTCEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-ECC-----eEcCC-CCCHHHcCCCCCCEEEEE
Confidence 344567888999999999999999999999998886 322 23333 589999999988776554
No 30
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=87.61 E-value=1.8 Score=37.10 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=48.8
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
......+.++..+|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++..+..|.+-
T Consensus 26 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~G-----k~L~-D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 26 TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTCBTGGGTCCTTCEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE-ECC-----eECC-CcCcHHHCCCCCCCEEEEE
Confidence 344567889999999999999999999999988887 322 2333 3689999999988777654
No 31
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.54 E-value=1.8 Score=37.22 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=48.3
Q ss_pred CCCceEEEeCcc-----ccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 172 DNSQTVIRLSKK-----ASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 172 ~~~~~~~~iS~~-----~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
......+.++.. .|+.+|++++....++++++-||. |. + ..|.+.+++|.++.+..+..|.+-
T Consensus 15 ~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~----G-k~L~D~~~~L~~~~i~~g~~i~l~ 82 (92)
T 1wxv_A 15 SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FK----G-KSLKEMETPLSALGIQDGCRVMLI 82 (92)
T ss_dssp SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ET----T-EEECCSSSBHHHHTCCSSEEEEEE
T ss_pred CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-EC----C-eecCCCcccHHHCCCCCCCEEEEE
Confidence 344556778774 999999999999999999988886 32 2 334555678999999888777664
No 32
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=87.28 E-value=1.9 Score=35.72 Aligned_cols=63 Identities=13% Similarity=0.263 Sum_probs=48.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++++..++++++.||. |.+ ..+. .++||.++++..+..|-+-++
T Consensus 13 g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~-~~G-----~~L~-d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 13 SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEG-----QRIA-DNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTCCHHHHTCCTTEEEEEEEC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECC-----EEeC-CCCCHHHcCCCCCCEEEEEEe
Confidence 34567889999999999999999999999998885 322 2233 368999999998876655433
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.23 E-value=2.2 Score=36.13 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=49.8
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
....+.++...|+.+|++++.+..+++++..||. |.. ..+. .+++|.++.+..+..|.+-++.
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~G-----k~L~-d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQG-----QVLQ-DWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ETT-----EECC-SSSBHHHHTCCTTEEEEEEECS
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-ECC-----EEcc-CCCCHHHCCCCCCCEEEEEEec
Confidence 3456788999999999999999999999998886 322 2333 3689999999988877776553
No 34
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=87.17 E-value=2.1 Score=36.54 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
......+.++..+|+.+|++++....+++++..||. |. + ..|.+ +++|.++++ .+..|.+-+
T Consensus 14 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~----G-k~L~d-~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 14 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQ----G-RVLQD-DKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp TCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ET----T-EECCT-TSBGGGGTC-TTEEEEEEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-EC----C-eECCC-CCCHHHcCC-CCcEEEEEe
Confidence 344567889999999999999999999999988886 32 2 23443 789999999 665554443
No 35
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=86.68 E-value=1.8 Score=37.82 Aligned_cols=64 Identities=16% Similarity=0.319 Sum_probs=49.7
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++...|+.+|++++.+..+++++..||. |.+ ..+. .+++|.++++..+..|.+-++
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~G-----k~L~-D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETT-----EECC-TTCBSGGGTCCTTEEEEEECB
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 344567889999999999999999999999988887 322 2333 468999999988877665543
No 36
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=86.64 E-value=1.8 Score=36.67 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
......+.++..+|+.+|++++....+++++..||. |. + ..+.+ +++|.++++..+..|.+-+
T Consensus 21 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~----G-~~L~d-~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----G-KQMND-EKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ET----T-EECCT-TSBGGGGTCCTTCEEEECC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE-EC----C-eECCC-CCcHHHcCCCCCCEEEEEE
Confidence 344567889999999999999999999999988876 32 2 23443 7899999999887766543
No 37
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.57 E-value=3.4 Score=37.25 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=61.0
Q ss_pred ccceEEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 161 FXLCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 161 yP~~l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
....+++.+.+......+.++...|+.+|++.+-..++++.+..||- |.+ ..|.| +.||.++++..+..|=++
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLI-y~G-----KiLKD-~eTL~~~gIk~g~TIhLv 86 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIR-YSG-----KILKN-NETLVQHGVKPQEIVQVE 86 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEE-ETT-----EEECS-SCCHHHHSCCSSCEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEE-ECC-----eEcCC-cchHHHcCCCCCCEEEEE
Confidence 44567766666677788999999999999999999999999988864 322 23443 789999999999888788
Q ss_pred EEec
Q 002408 241 VQVD 244 (927)
Q Consensus 241 ~~~~ 244 (927)
.+..
T Consensus 87 i~s~ 90 (118)
T 2daf_A 87 IFST 90 (118)
T ss_dssp EEES
T ss_pred EecC
Confidence 7643
No 38
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=86.40 E-value=2.4 Score=37.28 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=48.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.....+.+...+|+.+|++++...++++++..||- |.+ ..|. .++||.++++..+..|++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~G-----KiL~-D~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-INK-----KQLQ-LGKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETT-----EECC-TTSBHHHHTCCSSEEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCC-----eECC-CCCcHHHcCCCCCCEEEE
Confidence 34567889999999999999999999999988875 332 2343 468999999999887744
No 39
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=86.38 E-value=1.9 Score=36.84 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=51.5
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEec
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (927)
......+.++..+|+.+|++++....+++++..||. |. + ..+.+ +++|.++++..+..+.+-++..
T Consensus 9 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~D-~~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----G-KQMND-EKTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ET----T-EECCT-TSBTTTTTCCTTCEEEEECBCC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE-EC----C-eECCC-CCcHHHcCCCCCCEEEEEEECC
Confidence 344567889999999999999999999999988886 32 2 23443 7899999999888877765543
No 40
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=86.35 E-value=3.5 Score=35.06 Aligned_cols=63 Identities=13% Similarity=0.283 Sum_probs=49.4
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
....+.++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..|.+-.+.
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----G-k~L~-D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FE----G-KPLE-DQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SS----S-SCCC-TTSBHHHHHCSTTCEEEEEEC-
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-EC----C-EECC-CCCcHHHcCCCCCCEEEEEEEc
Confidence 4456788999999999999999999999998886 32 2 2343 3689999999988877666543
No 41
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=86.34 E-value=2.8 Score=36.47 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=52.6
Q ss_pred eEEEEecc-CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 164 CLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 164 ~l~i~~~~-~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.++|.+.. ......+.++...|+.+|+++++...+++++..||. |.+ ..|. .++||.++++..+..|-+-++
T Consensus 21 ~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLi-f~G-----k~L~-d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 21 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEG-----QRIA-DNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETT-----EECC-TTCCHHHHTCCTTCEEEEEES
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-ECC-----eEcC-CCCCHHHCCCCCCCEEEEEEe
Confidence 34444432 334567889999999999999999999999998876 322 2233 368999999998877655443
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=86.12 E-value=2.9 Score=37.42 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=50.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++...|+.+|++++....+++++..||. |.+ ..+. .+++|.++.+..+..|.+-++
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTTTTTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECC-----EECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 344567889999999999999999999999998887 322 2333 367999999998887766554
No 43
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=86.01 E-value=3 Score=36.68 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..|.+-.+
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FA----G-KILK-DQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ET----T-EEEC-TTCCTGGGTCCTTCEEEEEEC
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CcCcHHHcCCCCCCEEEEEEc
Confidence 34567888999999999999999999999998885 32 2 2333 368999999998877766543
No 44
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.90 E-value=1.7 Score=37.70 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=48.1
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
...+.+....|+.+|++++....+++++.-||+......+....+.+.+++|.++++..+..|.|
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 46788999999999999999999999999998754311110011333478999999988876654
No 45
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=85.90 E-value=2.4 Score=38.68 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=49.2
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
...+.+....|+.+|+.++....|++++.-||.-..........|.+.+++|.++++..+..|.|-
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 467889999999999999999999999999997543211110123345789999999988766543
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=85.87 E-value=2.9 Score=36.33 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=50.8
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEec
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (927)
....+.++...|+.+|++++.+..+++++..||. |. + ..+.+ +++|.++++..+..|.+-++..
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~----G-k~L~D-~~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLED-GRTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ET----T-EECCT-TSBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----C-EECCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence 3457888999999999999999999999998886 32 2 23343 6899999999988887776643
No 47
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=85.71 E-value=2 Score=36.46 Aligned_cols=61 Identities=10% Similarity=0.200 Sum_probs=47.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
......+.++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..|.+
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----G-k~L~-D~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FK----G-KVLV-ETSTLKQSDVGSGAKLML 80 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ET----T-EECC-TTCBTTTTTCCTTEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----C-eECC-CcCCHHHCCCCCCCEEEE
Confidence 334456788999999999999999999999988886 32 2 2333 368999999988876655
No 48
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=85.50 E-value=3.8 Score=34.24 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=45.4
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
...+.+.+..++..|++..|+..+++++.+|++ |.+. .+ ..++|+.++.+.++..|
T Consensus 20 ~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~-----~l-~~~~Tp~~l~medgD~I 75 (79)
T 3a4r_A 20 MLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFF-FDGT-----KL-SGKELPADLGLESGDLI 75 (79)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEE-ETTE-----EC-CSCCCHHHHTCCTTCEE
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE-----Ec-CCCCCHHHcCCCCCCEE
Confidence 568899999999999999999999999999987 3321 22 34689999999987654
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=85.49 E-value=3.7 Score=36.02 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=48.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
...+.++...|+.+|++++.+..+++++..||. |. + ..+. .+++|.++++..+..|.+-++
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----G-k~L~-D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FA----G-KILK-DPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ET----T-EECC-TTSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CcCcHHHCCCCCCCEEEEEEc
Confidence 357888999999999999999999999998886 32 2 2343 368999999998887766544
No 50
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.33 E-value=3.7 Score=36.34 Aligned_cols=62 Identities=10% Similarity=0.157 Sum_probs=49.3
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
...+.+....|+.+|++++....+++.+..||. |. + ..|. .+++|.++.+..+..|.+-++.
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FA----G-KILK-DPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ET----T-EECC-TTSCHHHHTCCTTEEEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CcCcHHHcCCCCCCEEEEEEcC
Confidence 357888999999999999999999999998885 32 2 2343 3689999999988877776553
No 51
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=85.09 E-value=3.5 Score=34.93 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=48.4
Q ss_pred EEEEecc-CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 165 LKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 165 l~i~~~~-~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
+++.... ......+.++..+|+.+|++++....+++++.-||. |. + ..+.+ +++|.++++ .+..|-
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~----G-k~L~D-~~tL~~~~i-~g~~i~ 84 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQ----G-RVLQD-DKKLQEYNV-GGKVIH 84 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ET----T-EECCT-TSBGGGGTC-TTEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-EC----C-EECCC-CCcHHHcCC-CCcEEE
Confidence 4444332 344567889999999999999999999999988886 32 2 23444 789999999 665553
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=84.94 E-value=2.4 Score=37.27 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=48.7
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
...+.++...|+.+|++++....++++++.||. |.+ ..|.+..++|.++++..+..|.+-.+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~g-----k~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV-YME-----QLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE-ETT-----EEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE-ECC-----EECCCCcccHHHCCCCCCCEEEEEEC
Confidence 456888999999999999999999999988886 322 23455457999999998877766543
No 53
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=84.77 E-value=2.7 Score=38.06 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=50.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhcc-------CCceEEEEEEec
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ-------MDQDILLEVQVD 244 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~-------~~q~ilve~~~~ 244 (927)
......+.+...+|+.+|++++....+++++.-||+ |.+ ..|+ .++||.++++. .+-.+-+-++.+
T Consensus 10 ~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi-~~G-----k~Le-D~~TLsdy~I~~~~a~~q~~stL~L~lr~~ 82 (118)
T 2fnj_B 10 HKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLY-KDD-----QLLD-DGKTLGECGFTSQTARPQAPATVGLAFRAD 82 (118)
T ss_dssp BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBHHHHTCCTTTSBTTBCEEEEEEEBSS
T ss_pred CCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEE-ECC-----eECC-CCCCHHHcCcccccccCCCCCEEEEEecCC
Confidence 333456788999999999999999999999999998 432 2344 47999999999 344555556643
Q ss_pred C
Q 002408 245 N 245 (927)
Q Consensus 245 ~ 245 (927)
|
T Consensus 83 g 83 (118)
T 2fnj_B 83 D 83 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 54
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=84.76 E-value=2.5 Score=36.50 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=49.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++.+..+++++..||. |. + ..++ .+++|.++++..+..|.+-++
T Consensus 27 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 27 QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL-LA----G-APLE-DEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE-ET----T-EECC-TTSBHHHHTCCSSCEEEEECC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE-EC----C-EECC-CCCcHHHCCCCCCCEEEEEEe
Confidence 34557888999999999999999999999998886 32 2 2333 468999999998877766543
No 55
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=84.40 E-value=3.9 Score=33.18 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++.+..+++++..||. |. + ..+. .+++|.++++..+..+.+-++
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~----g-~~L~-d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YS----G-KQMN-DEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTSBGGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC----C-EECC-CCCcHHHcCCCCCCEEEEEEe
Confidence 33457788999999999999999999999998886 32 2 2333 368999999998888776654
No 56
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=83.56 E-value=2.8 Score=37.97 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=51.7
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccC-------CceEEEEEEe
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQM-------DQDILLEVQV 243 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~-------~q~ilve~~~ 243 (927)
++.....+.+...+||.+|++++....+++++.-||+ |.+ .+|+ .++||.++++.. +-.+-+-++.
T Consensus 9 r~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI-~~G-----k~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 9 RHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDD-----QLLD-DGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp EBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred cCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE-eCC-----eECC-CcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 3444556678899999999999999999999999998 432 3444 479999999988 6666555655
Q ss_pred cC
Q 002408 244 DN 245 (927)
Q Consensus 244 ~~ 245 (927)
+|
T Consensus 82 ~~ 83 (118)
T 4ajy_B 82 DD 83 (118)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 57
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=83.20 E-value=5.1 Score=33.52 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=47.9
Q ss_pred CCceEEEeCccccHHHHHHHHHHH---hCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~---~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
.....+.++...|+.+|++++... .+++++..||. |. + ..+. .+++|.++++..+..|.+-.
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----G-KILS-DDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ET----T-EECC-TTSBGGGGCCCTTSEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-EC----C-EECc-CCCCHHHcCCCCCCEEEEEE
Confidence 345578899999999999999998 57998988886 32 2 2344 36899999999888776654
No 58
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=83.01 E-value=4.1 Score=37.38 Aligned_cols=64 Identities=13% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
.....+.++...|+.+|++++....+++.+..||. |. + ..|. .+++|.++++..+..|.+-.+.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----G-k~L~-D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI-FA----G-KILK-DQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE-ET----T-EEES-TTSCGGGTTCSSSEEEEEEEC-
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE-EC----C-EEcC-CCCCHHHcCCCCCCEEEEEecc
Confidence 44567889999999999999999999999998886 32 2 2333 4689999999988777666553
No 59
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=82.97 E-value=5 Score=35.80 Aligned_cols=63 Identities=16% Similarity=0.305 Sum_probs=49.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++.+..+++++..||. |. + ..+.+ +++|.++.+..+..|.+-++
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ET----T-EECCS-SCBTTTTTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE-EC----C-EECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 34457888999999999999999999999998886 32 2 23343 68999999998887776654
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=82.42 E-value=1.3 Score=39.11 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
......+.++..+|+.+|++++.+..+++++..||. |. + ..+.+ +++|.++++..+..|.+
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----G-k~L~D-~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YS----G-KILKD-DQTVESYHIQDGHSVHL 96 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ET----T-EECCT-TSBTTTTTCCTTEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-EC----C-EECCC-cCcHHHCCCCCCCEEEE
Confidence 444556788999999999999999999999988886 32 2 23343 68999999988766654
No 61
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=81.72 E-value=5.2 Score=35.10 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=47.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.....+.+...+|+.+|++++....++++++.||. |. + ..|.| +.+|.++++..+..|-+
T Consensus 38 Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi-~~----G-k~L~D-~~TL~dygI~~gstlhL 97 (100)
T 1uh6_A 38 GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLK-KW----Y-TIFKD-HVSLGDYEIHDGMNLEL 97 (100)
T ss_dssp SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEE-ET----T-EECCS-SCBHHHHTCCTTEEEEE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEE-EC----C-EECCC-CCCHHHcCCCCCCEEEE
Confidence 45567889999999999999999999999999986 32 2 33443 78999999987765543
No 62
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=81.68 E-value=2.1 Score=38.06 Aligned_cols=63 Identities=13% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++..+|+.+|++++....++++++.||. |. + ..|.+ +++|.++++..+..|.+-++
T Consensus 11 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----G-k~L~D-~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 11 KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLI-YS----G-KVLQD-SKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEE-ET----T-EECCT-TSBTTTTTCCTTCEEEEECC
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEE-EC----C-EECCC-cCCHHHcCCCCCCEEEEEEc
Confidence 34467788999999999999999999999988876 32 2 33444 68999999999887766544
No 63
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.34 E-value=4.6 Score=33.34 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=46.5
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
....+.++...|+.+|++++.+..+++++..||. |. + ..+. .+++|.++++..+..|.+-
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~----g-k~L~-d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL-FK----G-KALA-DGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE-ET----T-EECC-TTSBGGGGTCCSSBCCEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-EC----C-eECC-CCCcHHHcCCCCCCEEEEE
Confidence 3456788999999999999999999999988885 32 2 2333 3689999999887766543
No 64
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.25 E-value=8.4 Score=32.50 Aligned_cols=63 Identities=29% Similarity=0.356 Sum_probs=49.3
Q ss_pred CceEE-EeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 174 SQTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 174 ~~~~~-~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
....+ .++...|+.+|++++....+++++..||. |. + ..+. .+++|.++.+..+..|.+-++.
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~----g-k~L~-d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLF-YR----G-KQLE-NGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE-ET----T-EECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE-EC----C-eECC-CCCCHHHCCCCCCCEEEEEEeC
Confidence 34667 49999999999999999999999998886 32 2 2333 3689999999988877666553
No 65
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=80.68 E-value=6 Score=33.37 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.....+.++..+|+.+|++++....++++++-||. |. +..+++ .+++|.++++..+..|.+-
T Consensus 20 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~----Gk~lL~-D~~tL~~y~I~~gs~i~lv 81 (84)
T 2kk8_A 20 GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI-VD----GIVILR-EDLTVEQCQIVPTSDIQLE 81 (84)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ET----TEECCC-SSSBHHHHTCCTTSCEEEE
T ss_pred CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-EC----CEEecC-CcCCHHHcCCCCCCEEEEE
Confidence 34457889999999999999999999999998886 32 212244 3689999999988776554
No 66
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=80.38 E-value=5.2 Score=34.68 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=47.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
+.....+.+.+..++..|++..|+..+++++.+|+. |.+. . + ..++|+.++.+.++..|-
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG~----~-l-~~~~Tp~dl~medgD~Id 75 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----P-I-NETDTPAQLEMEDEDTID 75 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTE----E-C-CTTCCTTTTTCCTTCEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEE-ECCE----E-c-CCCCCHHHcCCCCCCEEE
Confidence 334567889999999999999999999999999986 3322 2 2 346899999999887553
No 67
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.29 E-value=3.1 Score=36.12 Aligned_cols=60 Identities=13% Similarity=0.330 Sum_probs=46.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
......+.++...|+.+|++++....++++++-||. |. + ..++ +.+|.++++..+..|.+
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~----G-k~Ld--d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YK----G-LVPE--DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SS----S-BCCS--SSBHHHHCCCTTEEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-eeCC--cCcHHHCCCCCCCEEEE
Confidence 344557889999999999999999999999988876 32 2 2333 35999999988766654
No 68
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=79.80 E-value=5.6 Score=35.33 Aligned_cols=67 Identities=25% Similarity=0.325 Sum_probs=50.0
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
++|.+........+.+.+..++..|++..|+..+++++.+|++ |.+. . + ..++|+.++.+..+..|-
T Consensus 32 I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~-FdG~----r-l-~~~~Tp~dl~medgD~Id 98 (106)
T 2eke_C 32 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGI----R-I-QADQTPEDLDMEDNDIIE 98 (106)
T ss_dssp EEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEE-ETTE----E-C-CTTCCTTTTTCCTTEEEE
T ss_pred EEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEE-ECCe----E-c-CCCCCHHHcCCCCCCEEE
Confidence 4443333444567889999999999999999999999999988 3321 2 2 246899999999876543
No 69
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=79.30 E-value=7.5 Score=33.43 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=46.8
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
+.....+.+.+..++..|++..|+..+++++.+|+. |.+. . + ..++|+.++.+.++..|
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~-FdG~----~-l-~~~~Tp~dl~medgD~I 72 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----P-I-NETDTPAQLEMEDEDTI 72 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEE-ETTE----E-C-CTTCCTTTTTCCTTEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----E-c-CCCCCHHHcCCCCCCEE
Confidence 344578899999999999999999999999999987 3321 2 2 34689999999987655
No 70
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=79.18 E-value=5.9 Score=32.32 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=46.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
+.....+.+.+..++..|++..|+..+++++.+|++ |.+. .+ ..++|+.++.+.++..|
T Consensus 10 ~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~l--~~~~Tp~~l~medgD~I 68 (72)
T 1wm3_A 10 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----PI--NETDTPAQLEMEDEDTI 68 (72)
T ss_dssp TSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEE-ETTE----EC--CTTCCTTTTTCCTTEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEE
Confidence 344578899999999999999999999999999987 3322 22 24689999999877544
No 71
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=78.59 E-value=6.3 Score=35.11 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=49.3
Q ss_pred CceEEEeCc-cccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 174 SQTVIRLSK-KASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 174 ~~~~~~iS~-~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
....+.++. ..|+.+|++++....+++++..||. |. + .++.+ +++|.++++..+..|.+-++.
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~----G-k~L~D-~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GK----A-GFLKD-NMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CS----S-SBCCT-TSBTTTTTCSSSCEEEEECSS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-EC----C-EECCC-CCcHHHCCCCCCCEEEEEEEc
Confidence 345678887 9999999999999999999988886 32 2 24443 689999999988877776553
No 72
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.44 E-value=4.1 Score=35.20 Aligned_cols=61 Identities=8% Similarity=0.139 Sum_probs=47.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.....+.+....|+.+|++++....+++++..||. |. + ..|. .+++|.++++..+..|.+-
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~----G-k~L~-D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI-FT----G-KILR-DQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ET----T-EECC-TTSCHHHHTCCTTEEEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-EC----C-EECC-CcCCHHHCCCCCCCEEEEE
Confidence 44567888999999999999999999999988875 32 2 2343 3689999999887666544
No 73
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=78.32 E-value=9.3 Score=31.27 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=46.2
Q ss_pred EEE-eCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 177 VIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 177 ~~~-iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
.+. ++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..+.+-+
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~----g-~~L~-d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YR----G-KQME-DGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTCBTTTTTCCTTCEEEEEE
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChhhEEEE-EC----C-EECC-CCCCHHHcCCCCCCEEEEEE
Confidence 677 9999999999999999999999998886 32 2 2333 36899999998887766543
No 74
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=77.64 E-value=7.9 Score=34.73 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=48.7
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 176 ~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
..+.++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..|.+-++.
T Consensus 48 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~----G-k~L~-D~~tL~~y~i~~g~~i~lv~rl 108 (115)
T 1we7_A 48 LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YE----G-IFIK-DSNSLAYYNMASGAVIHLALKE 108 (115)
T ss_dssp EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ET----T-EEEC-TTSBHHHHTCCSSCEEEEEECC
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-EC----C-EECC-CCCCHHHCCCCCCCEEEEEEEc
Confidence 46788899999999999999999999998886 32 2 2344 3689999999988877776554
No 75
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=77.01 E-value=9.5 Score=32.87 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=46.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
+.....+.+.+..++..|++..|+..+++++.+|++ |.+. . + ..+.|+.++.+..+..|
T Consensus 26 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~-fdG~----~-l-~~~~Tp~dl~medgD~I 84 (93)
T 2d07_B 26 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----P-I-NETDTPAQLEMEDEDTI 84 (93)
T ss_dssp TSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEE-ETTE----E-C-CTTCCTTTTTCCTTEEE
T ss_pred CCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEE-ECCE----E-c-CCCCCHHHcCCCCCCEE
Confidence 334567889999999999999999999999999987 3322 2 2 24689999999987655
No 76
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.76 E-value=9.4 Score=32.85 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=48.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHH---hCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKL---RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~---~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|++++... .+++++..||. |. + ..+.+ +++|.++++..+..|.+-+.
T Consensus 10 g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi-~~----G-k~L~D-~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLI-YA----G-KILND-DTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEE-ET----T-EECCT-TSBGGGGTCCSSSEEEEEES
T ss_pred CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEE-EC----C-EECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 344577889999999999999998 57999988885 32 2 23443 68999999998888766543
No 77
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=76.61 E-value=7.9 Score=34.74 Aligned_cols=65 Identities=15% Similarity=0.315 Sum_probs=51.3
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEec
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (927)
.....+.++...|+.+|++++....+++++..||. |. + ..|. .+++|.++++..+..|.+-++..
T Consensus 19 G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 19 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WA----G-KQLE-DGRTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTCBTTTTTCCSSCEEEEEECCC
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-EC----C-EECC-CCCcHHHCCCCCCCEEEEEEEcC
Confidence 34567889999999999999999999999998886 32 2 2333 36899999999888887776643
No 78
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.88 E-value=7.9 Score=34.22 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=46.5
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
......+.|.+..++..|++..|+..+++++.+|++ |.+. . + ..+.|+.++.+..+..|
T Consensus 33 ~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~-FdG~----~-l-~~~~Tp~dl~medgD~I 91 (104)
T 1wz0_A 33 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFR-FDGQ----P-I-NETDTPAQLEMEDEDTI 91 (104)
T ss_dssp SSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEE-SSSS----B-C-CTTSCTTTTTCCTTEEE
T ss_pred CCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEE-ECCE----E-c-CCCCCHHHcCCCCCCEE
Confidence 344577899999999999999999999999999887 3322 2 2 24689999999987554
No 79
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=74.91 E-value=3.1 Score=35.25 Aligned_cols=63 Identities=24% Similarity=0.316 Sum_probs=45.9
Q ss_pred ceEEE-eCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccC-CCCccCChhhhhccCCceEEEE
Q 002408 175 QTVIR-LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 175 ~~~~~-iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~l-l~~~~~tl~d~~l~~~q~ilve 240 (927)
...+. +...+|+.+|+..+.+..+++++..||-. ..+.+ .+ +.+.+++|.++++..+..|.+.
T Consensus 11 ~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~-~~p~k--~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 11 THLLQGLSSRTRLRELQGQIAAITGIAPGSQRILV-GYPPE--CLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEE-SSCCC--CCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred CEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEe-CCCCc--ccccCCCCCCHHHcCCCCCCEEEEE
Confidence 34566 88899999999999999999988777742 11111 22 2335789999999988777665
No 80
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=74.48 E-value=3.3 Score=36.05 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCce-EEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 173 NSQT-VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 173 ~~~~-~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.... .+.+...+|+.+|++++....++++++-||. |. + ..+.+ + +|.++++..+..|.+
T Consensus 16 g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi-~~----G-k~L~D-~-tL~~~~I~~g~~i~l 75 (96)
T 1wgg_A 16 KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVM-VK----G-GTLKD-D-DWGNIKMKNGMTVLM 75 (96)
T ss_dssp TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCE-ET----T-EECCS-S-CCCSCCCCSSCEEEC
T ss_pred CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-EC----C-cCCCC-C-CHHHCCCCCCCEEEE
Confidence 3445 4788899999999999999999999988876 32 2 23444 4 999999888776655
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=74.35 E-value=10 Score=36.63 Aligned_cols=66 Identities=15% Similarity=0.316 Sum_probs=51.6
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEec
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVD 244 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~ 244 (927)
......+.++..+|+.+|++++....+++++.-||. |.+ ..+. .+.+|.++++..+..+.+-++..
T Consensus 29 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g-----~~L~-d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 29 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETT-----EECC-TTCBTGGGTCCTTCEEEEEECCC
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECC-----cccc-ccCCHhHcCCcccceeeeeeccc
Confidence 344567889999999999999999999999988887 322 2333 36899999999888877665543
No 82
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=74.29 E-value=12 Score=33.68 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=51.4
Q ss_pred ceEEEEecc-CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 163 LCLKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 163 ~~l~i~~~~-~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
..++|.+.. +.....+.|.+..++..|++..|+..+++.+.+|++ |.+. .+ ..+.|+.++.+.++..|-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFl-FDG~-----rI-~~~~TP~dL~MEDgD~Id 108 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFL-FEGQ-----RI-ADNHTPKELGMEEEDVIE 108 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEE-ETTE-----EC-CTTCCTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEE-ECCe-----EC-CCCCCHHHcCCCCCCEEE
Confidence 444444433 344567889999999999999999999999999988 3321 22 246899999999887653
No 83
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.81 E-value=6.5 Score=34.74 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
.....+.++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..|.+-+
T Consensus 33 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~----G-k~L~-D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 33 GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FS----G-RPLT-DKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ET----T-EECC-TTSHHHHCCCSSSCEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-EC----C-EECC-CCCcHHHcCCCCCCEEEEEE
Confidence 34456889999999999999999999999998887 32 2 2333 36899999999888776653
No 84
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=72.78 E-value=13 Score=35.19 Aligned_cols=64 Identities=13% Similarity=0.263 Sum_probs=50.7
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
.....+.++..+|+.+|++++....+++++..||. |.+ ..+.+ +.+|.++++..+..+-+-++.
T Consensus 91 g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~d-~~tL~~y~i~~g~~l~l~~rl 154 (159)
T 3rt3_B 91 GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEG-----KPLED-QLPLGEYGLKPLSTVFMNLRL 154 (159)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETT-----EECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECC-----eecCC-CCCHHHcCCCCCCEEEEEEec
Confidence 34567889999999999999999999999998886 322 33443 689999999998877666553
No 85
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=72.57 E-value=14 Score=31.49 Aligned_cols=58 Identities=17% Similarity=0.103 Sum_probs=44.4
Q ss_pred eEEEeCccccHHHHHHHHHHHh--CCCCcceEEEEecCCcccccCCCCccCChhhh--hccCCceEEEE
Q 002408 176 TVIRLSKKASTRQLYEKVCKLR--GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDILLE 240 (927)
Q Consensus 176 ~~~~iS~~~t~~~l~~~~~~~~--~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~--~l~~~q~ilve 240 (927)
..+.+...+|+.+|++++.... ++++++-||. |. + ..|.+ +++|.++ ++..+..|.+-
T Consensus 22 ~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~----G-k~L~D-~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 22 LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YS----G-KLLLD-HQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ET----T-EECCS-SSCHHHHSCSSSCSEEEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-EC----C-EECcC-cCCHHHHhcCCCCCCEEEEE
Confidence 4556669999999999999998 9999988886 32 2 33443 5899999 88877665554
No 86
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.44 E-value=5.6 Score=35.25 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=47.1
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCc---------------ceEEEEecCCcccccCCCCccCChhhhhccCCce
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQE---------------KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~---------------~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 236 (927)
......+.+...+||.+|++++...+++++. ..||. |.+ ..|.+.+++|.++++..+..
T Consensus 16 ~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li-~~G-----k~L~dD~~tL~dygI~~g~~ 89 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT-SAG-----EKLTEDRKKLRDYGIRNRDE 89 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEE-SSS-----CEECCSSSBHHHHTCCSSEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEE-eCC-----cCccCCcCCHHHcCCCCCCE
Confidence 4445678889999999999999999988652 34555 322 23445579999999998877
Q ss_pred EEEEEE
Q 002408 237 ILLEVQ 242 (927)
Q Consensus 237 ilve~~ 242 (927)
|.+-.+
T Consensus 90 l~lv~~ 95 (105)
T 1v2y_A 90 VSFIKK 95 (105)
T ss_dssp EEEEEC
T ss_pred EEEEeh
Confidence 655433
No 87
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=72.44 E-value=11 Score=33.52 Aligned_cols=59 Identities=19% Similarity=0.414 Sum_probs=46.7
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
......+.|.+..++..|++..|+..+++++.+|+. |.+. . + ..++|+.++.+.++..|
T Consensus 35 ~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfi-FdG~----~-L-~~~~Tp~dl~mEDgD~I 93 (110)
T 2k8h_A 35 DGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFL-FDGT----P-I-DETKTPEELGMEDDDVI 93 (110)
T ss_dssp TSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEE-SSSC----B-C-CSSSHHHHHHCSSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEE-ECCE----E-c-CCCCCHHHcCCCCCCEE
Confidence 444678999999999999999999999999999877 3322 2 2 24689999999877544
No 88
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=71.03 E-value=2.9 Score=35.06 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=46.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.....+.++..+|+.+|++++.+.++++.+...|.. ..+....+....+.+|.++++..++.+.++
T Consensus 13 ~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~--~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 13 DGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYI--NRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp SEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCC--SCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEe--cCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 344566788999999999999999999866544432 122211343346788999999888888775
No 89
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=70.71 E-value=14 Score=35.72 Aligned_cols=66 Identities=15% Similarity=0.302 Sum_probs=51.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (927)
.....+.++..+|+.+|++++....++++++-||. |.+ ..+.+ +++|.++++..+..|.+-++..|
T Consensus 10 Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~D-~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 10 GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEE-ETT-----EECCT-TSBGGGGTCCTTCEEEEEECCCC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEE-ECC-----ccccC-cCcHHHcCCCCCCEEEEEEEecc
Confidence 34567889999999999999999999999988876 322 23443 68999999999888777666433
No 90
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=70.65 E-value=18 Score=35.52 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=50.3
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++..+|+.+|++++....+++++.-||. |.+ ..|.+ +++|.++++..+..|.+-++
T Consensus 114 ~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi-~~G-----k~L~D-~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 114 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETT-----EECCT-TCBGGGGTCCTTCEEEECCC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEE-ECC-----EECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 344567899999999999999999999999988876 322 33444 68999999998877766544
No 91
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=69.47 E-value=18 Score=34.15 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
......+.++..+|+.+|++++....++++++-||.-|..+ ..+ +.+.+|.++++..+..+.+-++
T Consensus 11 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g----~~L-~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 11 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSG----VAL-QDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp TSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTC----CBC-CTTSCGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCC----CCC-CCCCCHHHcCCCCCCEEEEEcc
Confidence 34456788999999999999999999999998888744222 223 3478999999999888766655
No 92
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=69.36 E-value=16 Score=30.66 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=48.7
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccC-CCCccCChhhhhccCCceEEEEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSP-LDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~l-l~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
++.......+...+++.+|..-+.. .+.+...++|.--++.. .+ ..+.++||.|++|.....++||.+
T Consensus 15 pdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk---~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 15 PSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRR---DVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp TTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCC---BGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCC---CCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 4555567788899999999998877 45566677776322221 22 236689999999998888888854
No 93
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=69.32 E-value=4.5 Score=35.91 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=48.3
Q ss_pred CCceEEEeC-ccccHHHHHHHHHHHhCCCCcceEEEEecCC---c-ccc--cC--CCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLS-KKASTRQLYEKVCKLRGIEQEKARIWDYFNK---Q-RST--SP--LDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS-~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~---~-~~~--~l--l~~~~~tl~d~~l~~~q~ilve 240 (927)
.....+.+. ..+|+.+|++++...++++++.-||...... . ... .+ +.+.+++|.++++..+..|.+.
T Consensus 16 ~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~ 92 (107)
T 1wf9_A 16 DGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA 92 (107)
T ss_dssp SCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEE
Confidence 334467888 8999999999999999999888777632210 0 000 12 1355789999999988777665
No 94
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=68.21 E-value=6.2 Score=33.72 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=45.5
Q ss_pred CceEE-EeCccccHHHHHHHHHHHhCCCCcceEEEE--ecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 174 SQTVI-RLSKKASTRQLYEKVCKLRGIEQEKARIWD--YFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 174 ~~~~~-~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~--~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
....+ .+...+|+.+|++++....++++++-||.. |. + ..+. .+.+|.++++..+..|.+
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~----G-k~L~-D~~~L~~~~i~~g~~l~l 79 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVK----G-KPAE-NDVKLGALKLKPNTKIMM 79 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEET----T-EECC-TTSBHHHHTCCTTEEEEE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccC----C-cCcC-CCCCHHHcCCCCCCEEEE
Confidence 33456 778899999999999999999999888762 22 2 2333 368999999988876654
No 95
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=68.07 E-value=11 Score=37.46 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=49.2
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.+.....+.|.+..++..|++..|+..+++.+.+|++ |.+. .+ ..+.|++++.+.++..|-+
T Consensus 36 ~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~-FdG~----rI--~~~~TP~dL~MEdgD~Idv 97 (200)
T 3pge_A 36 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDGI----RI--QADQTPEDLDMEDNDIIEA 97 (200)
T ss_dssp CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEE-ETTE----EC--CTTCCTTTTTCCTTEEEEE
T ss_pred cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEE-ECCE----Ec--CCCCCHHHcCCCCCCEEEE
Confidence 3555678999999999999999999999999999988 3322 12 2478999999998876543
No 96
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=67.71 E-value=6.3 Score=36.37 Aligned_cols=40 Identities=20% Similarity=0.453 Sum_probs=34.8
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCccc
Q 002408 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRS 215 (927)
Q Consensus 176 ~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~ 215 (927)
..+.|-+.+++.+|++.+.+.||++++.+|||.....+.+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~ 97 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNG 97 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCC
Confidence 4678889999999999999999999999999988665443
No 97
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=67.26 E-value=23 Score=29.28 Aligned_cols=59 Identities=8% Similarity=0.164 Sum_probs=46.0
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCc-ceEEEEecCCcccccCCCCccCChhhhhccCCce
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~-~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ 236 (927)
.......+.+-...++.++.+.-|+..+|+.+ .+|+- |.+. - .+.++++.|+.+.++..
T Consensus 17 ~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~Irll-FDGd-----R-Ldp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 17 SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLE-FEGE-----W-LDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEE-ETTE-----E-CCTTSBGGGSSCCTTCE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEE-EcCc-----c-cCccCChhhhCCcCCce
Confidence 45566788999999999999999999999988 78864 3321 1 24578999998887754
No 98
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=66.80 E-value=14 Score=34.36 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=49.6
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.....+.++...|+.+|+++++...+++++..||. |. + ..+. .+++|.++++..+..|.+-++
T Consensus 86 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~----g-~~L~-d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 86 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLE-DGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-EC----C-EECC-CCCCHHHcCCCCCCEEEEEEe
Confidence 34567788999999999999999999999998886 32 2 2333 368999999998887766654
No 99
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.74 E-value=11 Score=31.69 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=46.8
Q ss_pred EEEEeccCCC-ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhcc
Q 002408 165 LKLIDSRDNS-QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQ 232 (927)
Q Consensus 165 l~i~~~~~~~-~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~ 232 (927)
+++.+++..+ ...+++|...++.+|+-.+|..-+++++++-|.+-... . +. .+.+++|.|+++.
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~--~-e~-LdLskSLndlgir 75 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQS--Q-EP-LDLTKSLNDLGLR 75 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSC--C-CB-CCTTSCHHHHTCS
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCC--C-cc-cchhcchhhhhhh
Confidence 4455554444 45789999999999999999999999998766543221 2 33 3568999999986
No 100
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=65.99 E-value=11 Score=37.07 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=47.8
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
.+.....+.|.+..++..|++.-|+..+++++.+|++ |.+ . . + ..++|++++.+.++..|
T Consensus 64 ~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFL-FDG-q---R-I-~~ddTPeDLdMEDGDtI 123 (207)
T 3tix_A 64 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFL-YDG-I---E-I-QADQTPEDLDMEDNDII 123 (207)
T ss_dssp CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEE-ETT-E---E-C-CSSCCTTTTTCCTTEEE
T ss_pred cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEE-ECC-e---e-c-CCCCCHHHcCCCCCCEE
Confidence 4556678999999999999999999999999999987 332 1 1 2 24789999999987554
No 101
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=64.61 E-value=24 Score=30.65 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=44.9
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
...+.+.+..++..|++.-|+..+++.+.+|++ |.+ . .+ ..+.|++++.+.++..|
T Consensus 38 ~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~-FDG-~---rI--~~~~TP~dLdMEDgD~I 93 (97)
T 2jxx_A 38 TLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFF-FDG-T---KL--SGRELPADLGMESGDLI 93 (97)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEE-ETT-E---EC--CSCSCHHHHTCCTTEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCCCcccEEEE-ECC-E---Ec--CCCCCHHHcCCCCCCEE
Confidence 467899999999999999999999999999987 332 1 22 34789999999877544
No 102
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.45 E-value=15 Score=32.11 Aligned_cols=61 Identities=8% Similarity=0.138 Sum_probs=45.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.....+.+...+|+.+|++++....++++++-||--+.. + . +. .+.+|.++++..+..+.+
T Consensus 18 Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~---g-k-L~-D~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 18 DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKT---G-D-VE-DSTVLKSLHLPKNNSLYV 78 (100)
T ss_dssp SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSS---S-C-CC-TTSBHHHHCCCSEEEEEE
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCC---C-C-CC-CcCCHHHcCCCCCCEEEE
Confidence 344567888999999999999999999998777632212 2 2 33 468999999988765544
No 103
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=62.04 E-value=10 Score=32.31 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=42.0
Q ss_pred EeCccccHHHHHHHH-HHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhc-cCCceEEEE
Q 002408 179 RLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLE 240 (927)
Q Consensus 179 ~iS~~~t~~~l~~~~-~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l-~~~q~ilve 240 (927)
.++..+|+.+|++++ ....++++++-||. |.+ ..|. .+.+|.++++ ..+..+.+-
T Consensus 19 ~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 19 DFSPSDTILQIKQHLISEEKASHISEIKLL-LKG-----KVLH-DNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp ECCTTCBHHHHHHHHHHTTSCSSSTTEEEE-ETT-----EECC-TTCBHHHHCCCGGGCEEEEE
T ss_pred cCCCCCcHHHHHHHHHHHhcCCChHHEEEE-ECC-----EECc-CcCCHHHcCCCCCCCEEEEE
Confidence 456999999999999 77889999999987 432 3344 3689999999 466666554
No 104
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=61.81 E-value=18 Score=31.44 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=42.5
Q ss_pred EEEeCccccHHHHHHHH-HHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhc-cCCceEEEE
Q 002408 177 VIRLSKKASTRQLYEKV-CKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAML-QMDQDILLE 240 (927)
Q Consensus 177 ~~~iS~~~t~~~l~~~~-~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l-~~~q~ilve 240 (927)
.+.++..+|+.+|++++ ....++++++-||. |.+ ..|. .+++|.++++ ..+..|.+=
T Consensus 35 ~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dy~I~~~g~ti~lm 93 (98)
T 4a20_A 35 EHDFSPSDTILQIKQHLISEEKASHISEIKLL-LKG-----KVLH-DNLFLSDLKVTPANSTITVM 93 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEE-ETT-----EEEC-TTCBGGGSCCBTTBCEEEEE
T ss_pred EEecCCCChHHHHHHHHHHHhcCCChhhEEEE-ECC-----EECc-CcCCHHHcCcCCCCCEEEEE
Confidence 34667999999999999 66679999988876 322 2344 3689999999 777666543
No 105
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=58.95 E-value=19 Score=31.68 Aligned_cols=51 Identities=20% Similarity=0.154 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHHh--CCCCcc-eEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 183 KASTRQLYEKVCKLR--GIEQEK-ARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 183 ~~t~~~l~~~~~~~~--~l~~~~-~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
..|+.+|++++.... +++++. .||. |.+ ..|. .+++|.++++..+..|.+-
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi-~~G-----k~L~-D~~tL~~y~i~~g~~i~lv 97 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI-YCG-----RKLK-DDQTLDFYGIQPGSTVHVL 97 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE-ETT-----EECC-TTCBHHHHTCCTTCEEEEE
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE-ECC-----eECC-CCCcHHHcCCCCCCEEEEE
Confidence 499999999999999 999998 8885 322 2334 3689999999988776554
No 106
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=58.34 E-value=11 Score=32.14 Aligned_cols=37 Identities=8% Similarity=0.267 Sum_probs=30.7
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIW 207 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw 207 (927)
++....++.++...++.|+++.+|+.|++++++..|-
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lk 53 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLK 53 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEE
Confidence 3444567888999999999999999999998876554
No 107
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=57.22 E-value=51 Score=29.14 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=49.8
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCC-CCccCChhhhhccCCceEEEEE
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL-DVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll-~~~~~tl~d~~l~~~q~ilve~ 241 (927)
.++.......+...+|+.+|.+-+....+.+...++|.--++.. .+- .+.++||+|++|.....++++.
T Consensus 20 lpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk---~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 20 LPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRR---EFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCC---BCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCc---CCcccccCCCHHHCCCCCceEEEEEE
Confidence 35566677888999999999999988877666666665422221 121 2568999999999887777773
No 108
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=56.18 E-value=33 Score=31.77 Aligned_cols=64 Identities=16% Similarity=0.328 Sum_probs=50.0
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
.....+.++...|+.+|++++....+++++..||. |. + ..+. .+.+|.++++..+..+.+..+.
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~----g-~~L~-d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 10 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLE-DGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ET----T-EECC-TTSBTGGGTCCTTCEEEEEECC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE-EC----C-eECc-CcccHHHhccCCCCeeEEEeec
Confidence 34557888999999999999999999999988876 32 2 2333 4689999999988887766553
No 109
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=52.93 E-value=27 Score=33.47 Aligned_cols=62 Identities=16% Similarity=0.320 Sum_probs=48.2
Q ss_pred CCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEV 241 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~ 241 (927)
.....+.++..+|+.+|++++....++++++-||. |.+ ..+. .+.+|.++++..+..|.+-+
T Consensus 106 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g-----~~L~-D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETT-----EECC-TTSBSGGGTCCTTCEEEECC
T ss_pred CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEE-ECC-----ccCC-CCCcHHHhCCCCCCEEEEEE
Confidence 34467888999999999999999999999888875 322 2334 36899999999887776543
No 110
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=52.01 E-value=5.8 Score=36.44 Aligned_cols=25 Identities=20% Similarity=0.200 Sum_probs=21.1
Q ss_pred CCCccccccCCCcchHHHHHHHHhC
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVH 340 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~ 340 (927)
.+.+.|+.|.-++|++|++||....
T Consensus 10 kk~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHHHH
T ss_pred ccccccCCCCCcchHHHHHHHHHHH
Confidence 3458899999999999999997643
No 111
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.01 E-value=17 Score=31.09 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=42.5
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
....+.++...|+.+|++++.... ++..||. |. + ..|.+.+++|.++++..+..|.+-
T Consensus 18 ~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi-~~----G-k~L~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 18 TEELAVARPEDTVGTLKSKYFPGQ---ESQMKLI-YQ----G-RLLQDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp EEEEEEECSSSBHHHHHHHHSSST---TTTCEEE-ET----T-EECCCSSCBTTTTTCCTTEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHhhC---cCcEEEE-EC----C-EEccCCcCCHHHcCCCCCCEEEEE
Confidence 345678899999999999998776 6667775 32 2 344554489999999888766554
No 112
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=49.38 E-value=3.5 Score=37.91 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=0.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEecC
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDN 245 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~~~ 245 (927)
...+.++..+|+.+|++++....+++++..||. |.+ ..++ .+.+|.++++..+..|.+-++..|
T Consensus 12 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~~~~I~~gsti~l~~rl~G 75 (128)
T 3u5e_m 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRLRG 75 (128)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECC-----EECC-CCCchhhhccCCCCEEEEEEEcCC
Confidence 456788899999999999999999999888876 322 2333 378999999998887766555433
No 113
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=48.74 E-value=42 Score=29.11 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=40.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHh-CCC-CcceEEEEecCCcccccCCCCccCChhhh--hccCCceE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLR-GIE-QEKARIWDYFNKQRSTSPLDVSDQTLDDA--MLQMDQDI 237 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~-~l~-~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~--~l~~~q~i 237 (927)
...+.+...+|+.+|++++...+ +++ +++-||. |.+ ..|. .+++|.++ ++..+..|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLI-y~G-----k~L~-D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLV-YSG-----RLLP-DHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEE-ETT-----EEEC-TTSBTHHHHTTTCSEEEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEE-ECC-----EECC-CCCCHHHHhcCCCCCCEE
Confidence 34777899999999999999875 555 4777775 322 2344 36899999 88765443
No 114
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=53.58 E-value=3.8 Score=33.45 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=44.2
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
...+.++...|+.+|++++....+++++..||. |. + ..+. .+++|.++++..+..+.+-
T Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~----g-k~L~-d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 12 GFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI-FA----G-KELP-NHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 345778889999999999999999999888875 22 2 2333 3689999998877665443
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.28 E-value=1e+02 Score=27.04 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=49.1
Q ss_pred ccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 170 SRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 170 ~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
.++.......+...+|+.+|..-+... +.....++|.--+... .+..+.++||+|++|.....++||...
T Consensus 30 lpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk---~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 30 CPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRR---ALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp CTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCC---BCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCc---CCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 355666677888999999999888754 4445567665432221 333367899999999998888888653
No 116
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=44.78 E-value=45 Score=30.32 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=43.4
Q ss_pred CCceEEEeCccccHHHHHHHHHHH------hCCC--CcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKL------RGIE--QEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~------~~l~--~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.....+.++..+|+.+|++++... -+++ ++..||. |.+ ..|+ .++||.++++..+..+.+.
T Consensus 27 G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLI-y~G-----K~Le-D~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 27 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG-----RFLH-GNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEE-SSS-----SEEE-SSCBTGGGCCCTTSEEEEE
T ss_pred CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEE-ECC-----cCCC-CCCcHHHcCCCCCCceEEE
Confidence 356788999999999999999983 3553 5677775 322 2344 4689999999876644444
No 117
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.82 E-value=1.5e+02 Score=25.34 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=38.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCccccc--ccCCCCeEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~ 582 (927)
.+.++++.+.|+.+|++.+....|++++..-++... ..++.+.+.++...+. .|.++..|.
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~gstih 91 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDGLRLH 91 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCCCEEE
Confidence 567888899999999999999999987765444332 2333333322333443 455555543
No 118
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=43.60 E-value=73 Score=26.71 Aligned_cols=62 Identities=8% Similarity=-0.123 Sum_probs=39.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeE-EeecCCccccc--ccCCCCeEEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIF-RFFENPAELIS--SIKDDEHIVA 583 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~-~~~~d~~~~~~--~i~~~d~i~~ 583 (927)
...+++++..|+.+|+..+....|++++.+-+....-...+. +.++| ...+. .|.++..|.+
T Consensus 16 ~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 16 VPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEE
T ss_pred EEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEE
Confidence 357889999999999999999999987765554433333332 33333 33443 4555555543
No 119
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.89 E-value=70 Score=28.62 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCceEEEeCccccHHHHHHHHHHHh------CC--CCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 173 NSQTVIRLSKKASTRQLYEKVCKLR------GI--EQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 173 ~~~~~~~iS~~~t~~~l~~~~~~~~------~l--~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
.....+.+...+||.+|++++.... ++ +++..||- |.+ ..|+ .+.||.++++..+..+.+.
T Consensus 26 G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLI-y~G-----K~Le-D~~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 26 GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLI-YQG-----RFLH-GNVTLGALKLPFGKTTVMH 94 (116)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEE-ETT-----EEEC-SSCBTTTTTCCSSCEEEEE
T ss_pred CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEE-ECC-----cCCC-CCCcHHHcCCCCCCceEEE
Confidence 3567889999999999999999843 43 57778875 322 2344 3689999998766544444
No 120
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=42.82 E-value=1.7e+02 Score=25.58 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=51.3
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
+++++ +++....+.+=...|+++-+.++.+..+|.++.+.++.......++...-+.+.-+. ...+.++.||+..
T Consensus 21 ir~hL-PNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~~~~~i~WdtDi~---~L~geEL~Ve~ld 95 (107)
T 1rrb_A 21 IRVFL-PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLQEHKGKKARLDWNTDAA---SLIGEELQVDFLK 95 (107)
T ss_dssp EEEEC-TTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEEECCCSCSSSCEECCTTCBHH---HHTTSEEEEEEC-
T ss_pred EEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeEEccccCCCcccccchhhhhh---hccCcEEEEEEcc
Confidence 44443 666778899999999999999999999999999999977533333222222332222 2336788888753
No 121
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=42.53 E-value=1e+02 Score=25.41 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=35.7
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEec
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYF 210 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~ 210 (927)
+++....+.+=...|+++-+.++.+..+|.++.+.++...
T Consensus 9 Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~~~~ 48 (77)
T 1c1y_B 9 PNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLL 48 (77)
T ss_dssp TTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEEE
T ss_pred CCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEec
Confidence 5666778899999999999999999999999999999775
No 122
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=42.01 E-value=24 Score=34.20 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=26.1
Q ss_pred EEEEEeec-cCCCCeEEEEEEeCCCCCEEEECC
Q 002408 855 FAISNHYG-GLGGGHYTAYAKLIDENRWYHFDD 886 (927)
Q Consensus 855 ~AVi~H~G-~l~~GHYtAy~k~~~~~~Wy~fnD 886 (927)
.|+||--| ..||=|+.|++-++...+.|.||=
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 68888888 677789999999999999999983
No 123
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=41.96 E-value=5.4 Score=37.93 Aligned_cols=62 Identities=16% Similarity=0.336 Sum_probs=0.0
Q ss_pred ceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEEe
Q 002408 175 QTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQV 243 (927)
Q Consensus 175 ~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~~ 243 (927)
...+.++..+|+.+|++++....+++++..||. |.+ ..|. .+.+|.++++..+..|.+-++.
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi-~~G-----k~L~-D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECC-----EEcc-ccCcHHHcCCCCCCEEEEEeec
Confidence 456788899999999999999999999888876 322 2333 3689999999988776655553
No 124
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=41.94 E-value=69 Score=26.88 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=38.6
Q ss_pred CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhh
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAM 230 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~ 230 (927)
....+.+.+..++.+|.+++++.++++.+.+.|+ |.....+ +++...+..++++.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~Ls-Yk~~~s~-~~vi~~d~dl~~aw 68 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLS-YRPRDSN-ELVPLSEDSMKDAW 68 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEE-ECCTTCS-SCEECCTTTHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEE-eeCCCCC-CeeccChHHHHHHH
Confidence 4456889999999999999999999998888887 4333222 22222345566553
No 125
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=41.93 E-value=58 Score=34.52 Aligned_cols=69 Identities=14% Similarity=0.304 Sum_probs=51.1
Q ss_pred EEEEecc-CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEE
Q 002408 165 LKLIDSR-DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLE 240 (927)
Q Consensus 165 l~i~~~~-~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve 240 (927)
++|.+.. ......+.++..+|+.+|++++....++++++.||. |. + ..|. .+++|.++++..+..|.+-
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi-~~----G-k~L~-D~~TLsdygI~~gstL~Lv 303 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FA----G-KQLE-DGRTLSDYNIQKESTLHLV 303 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ET----T-EECC-TTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-eC----C-eecC-CCCCHHHcCCCCCCEEEEE
Confidence 4444332 334457889999999999999999999999988886 32 2 2333 3689999999988776554
No 126
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=39.75 E-value=90 Score=27.15 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=51.5
Q ss_pred EEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCC-eeEEeecCCcc
Q 002408 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH-QIFRFFENPAE 570 (927)
Q Consensus 505 ~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~-~~~~~~~d~~~ 570 (927)
...+.|+..||.. .++.|.+..|.+++++.++...++..+...-++|.+-. .+.++++|-..
T Consensus 9 k~vvkvf~~Dgss----ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~ 71 (100)
T 1wgr_A 9 PHVVKVYSEDGAC----RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHES 71 (100)
T ss_dssp CEEEEEEETTSCE----EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSC
T ss_pred CEEEEEEecCCCE----EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchh
Confidence 3567788888874 57889999999999999999999998898899988876 67788887543
No 127
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.48 E-value=1.7e+02 Score=24.64 Aligned_cols=35 Identities=6% Similarity=-0.187 Sum_probs=29.0
Q ss_pred ccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEE
Q 002408 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (927)
Q Consensus 520 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 554 (927)
..+.++++.+.++.+|+..++...|+.....-+..
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 45788999999999999999999999876644433
No 128
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=39.37 E-value=1.2e+02 Score=26.07 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=29.7
Q ss_pred ccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEE
Q 002408 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAE 555 (927)
Q Consensus 520 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e 555 (927)
..+.++++.+.|+.+|+..|....|++++..-++..
T Consensus 27 ~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 27 FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 357889999999999999999999998776555443
No 129
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=38.09 E-value=1.9e+02 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=29.0
Q ss_pred ccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEE
Q 002408 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (927)
Q Consensus 520 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 554 (927)
..+.++++.+.|+.+|+..|...+|++++..-+..
T Consensus 18 ~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~ 52 (122)
T 1t0y_A 18 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 52 (122)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 45788899999999999999999999876654443
No 130
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.25 E-value=35 Score=28.83 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=41.3
Q ss_pred EE-EeCccccHHHHHHHHHHH-hCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 177 VI-RLSKKASTRQLYEKVCKL-RGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 177 ~~-~iS~~~t~~~l~~~~~~~-~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
.+ .+...+|+.+|++++.+. .+++++.-||- +. ..+ ..|. .+++|.++++..+..|.
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~-~~--~~G-k~L~-D~~tL~~y~i~~~stl~ 84 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLR-LD--PKG-KSLK-DEDVLQKLPVGTTATLY 84 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEE-SS--TTS-CCCC-TTCBTTTSSCCSEEEEE
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEE-ec--CCC-cCcC-CCCCHHHcCCCCCCEEE
Confidence 57 899999999999999996 68888877763 21 122 2343 36899999988765544
No 131
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=36.07 E-value=92 Score=28.16 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=48.4
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCC-CCccCChhhhhccCCceEEEEEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPL-DVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll-~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
++.......+...+|+.+|..-+... +.....++|.--++.. .+. .+.++||.|++|.....++|+-.
T Consensus 51 PdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk---~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 51 PDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRR---KLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp TTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCC---EETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCc---CCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 45556677888999999999988765 6656677766422221 222 35689999999998778888743
No 132
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=35.50 E-value=1.6e+02 Score=25.16 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=49.5
Q ss_pred eEEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 164 CLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 164 ~l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
.+++++ +++....+.+=...|+++-+.++.+..+|.++.+.++....+.+. .+ +.+.-+ ....+.++.||+.
T Consensus 19 ~irvhL-PNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy~~~~~~~~-~I--dWdtDi---~~L~~eEL~Ve~l 90 (95)
T 2l05_A 19 IVRVFL-PNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQDGEKK-PI--GWDTDI---SWLTGEELHVEVL 90 (95)
T ss_dssp EEEEEE-TTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEEEEETTEEE-EE--CTTSBG---GGGTTCEEEEEES
T ss_pred EEEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEEEcCCCCcc-cc--chhHhh---hhccCcEEEEEEe
Confidence 344443 566677889999999999999999999999999999977543222 11 112111 2233678888865
No 133
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.91 E-value=1.2e+02 Score=26.12 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=37.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCccccc--ccCCCCeEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~ 582 (927)
.+.+.++.+.++.+|++.++...++.....-++ |.. +.+.|....+. .|.+++.|+
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~---~~g---k~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIV---YME---QLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE---ETT---EEECCSSSBHHHHTCCTTEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE---ECC---EECCCCcccHHHCCCCCCCEEE
Confidence 456788999999999999999999876654433 343 34555533443 355555544
No 134
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.87 E-value=1e+02 Score=26.21 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=39.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeC-CeeEEeecCCccccc--ccCCCCeEEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYN-HQIFRFFENPAELIS--SIKDDEHIVA 583 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~-~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (927)
.+.++++++.++.+|+..++..+|+.....-+....-. .....-+.|+...+. .+.+++.|++
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 35677889999999999999999987765444333211 112222445555554 3566666654
No 135
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=33.48 E-value=1.3e+02 Score=25.93 Aligned_cols=66 Identities=11% Similarity=0.104 Sum_probs=49.8
Q ss_pred ceEEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 163 LCLKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 163 ~~l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
+.|++. .......+.+-+...++.|++.-|+..|++++.+|+- |.+ . .+ ..+.|+.++.+..+..|
T Consensus 22 IniKV~--~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFl-fDG-~---rI--~~~~TP~~L~meD~DiI 87 (95)
T 2l76_A 22 FPLKIR--CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLL-FGE-T---EL--SPTATPRTLKLGVADII 87 (95)
T ss_dssp EEEEEE--CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEE-ETT-E---EC--CTTSCHHHHTCCSSCEE
T ss_pred EEEEEE--cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEE-ECC-c---CC--CCCCCHhHcCCCCCCEE
Confidence 455554 4566778899999999999999999999999999865 332 2 11 34689999998877553
No 136
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=32.99 E-value=1.4e+02 Score=25.28 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=31.2
Q ss_pred EEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceE
Q 002408 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (927)
Q Consensus 506 ~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 552 (927)
+.+.|-..+|. .+.+.+..+.++.+|++.++...++.....-+
T Consensus 23 m~I~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL 65 (98)
T 4hcn_B 23 MQIFVKTLTGK----TITLEVESSDTIDNVKSKIQDKEGIPPDQQRL 65 (98)
T ss_dssp CEEEEEETTCC----EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEEEEeCCCC----EEEEEECCCCcHHHHHHHHHHHhCCChhHEEE
Confidence 34444444443 36788999999999999999999987665433
No 137
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.81 E-value=2.2e+02 Score=24.59 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=40.2
Q ss_pred ccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCcccc--cccCCCCeEEEEEe
Q 002408 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIVAYRF 586 (927)
Q Consensus 520 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~~~~~ 586 (927)
.++.+.+..+.++.+|++.+++..+++++..-++ |+.+ ++.|. ..+ ..|.++..|++-.+
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI---~~GK---iL~D~-~TL~~y~I~~gsti~vl~l 91 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQENYIKIV---INKK---QLQLG-KTLEEQGVAHNVKAMVLEL 91 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE---ETTE---ECCTT-SBHHHHTCCSSEEEEEECC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE---eCCe---ECCCC-CcHHHcCCCCCCEEEEEEE
Confidence 4678888999999999999999999876554332 5554 44543 233 34566666554433
No 138
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.95 E-value=1.8e+02 Score=24.44 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=48.6
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEEEEE
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ 242 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilve~~ 242 (927)
+++++ +++....+.+=...|+++-+.++.+..+|.++.+.++......+. .+-.+.+. ....+.++.||+.
T Consensus 10 irvhL-Pn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~~~~~-~IdWdtDi-----~~L~~eEL~Ve~l 80 (86)
T 1wxm_A 10 VKVYL-PNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKGRKT-VTAWDTAI-----APLDGEELIVEVL 80 (86)
T ss_dssp EEEEC-SSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSSCEE-EECSSSBS-----TTCSSCEEEEEEC
T ss_pred EEEEC-CCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEEcCCCCcc-ccchhHhh-----hhccCcEEEEEEc
Confidence 34442 566677889999999999999999999999999999977543222 11111111 1233677888865
No 139
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=31.66 E-value=2e+02 Score=23.10 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=36.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCccccc--ccCCCCeEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIV 582 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~ 582 (927)
.+.+.++.+.++.+|++.++...+++....-++ |+.+ .+.|. ..+. .|.+++.|+
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~---~~g~---~L~d~-~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIQKWSTLF 71 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE---ETTE---ECCTT-SBTGGGTCCTTCEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE---ECCE---ECCCC-CCHHHcCCCCCCEEE
Confidence 356788899999999999999999876654333 3443 34443 3333 345555544
No 140
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=31.05 E-value=26 Score=29.31 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=45.2
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceE-EEEecCCcccccCCCCccCChhhhhccCCceEE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKAR-IWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDIL 238 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~R-lw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~il 238 (927)
+......+++|..-|+++|++.+.+.++++..... -| +.-.++. .+ ...+++|.|+.+..|..+-
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~-irv~NK~-~~-L~~~~~L~d~~ItnGD~Le 79 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHW-IRVVNKD-KV-FSGECKLSDCGITNGDRLE 79 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCE-EEEGGGT-EE-EETTSBTGGGTCCTTCEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCE-EEEecCC-EE-EcCCCEEeeCCcCCCCEEE
Confidence 45667789999999999999999999998753211 12 2112333 33 3457889999998886553
No 141
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=30.63 E-value=42 Score=33.42 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=25.4
Q ss_pred eccCCCCeEEEEEEeCCCCCEEEECCceeeecCc
Q 002408 861 YGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSE 894 (927)
Q Consensus 861 ~G~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~ 894 (927)
.|+.++|||+.+.. ..+ +.+|-..+.+++.
T Consensus 167 ~G~~~~GHY~~~~~--~~~--~~vDG~~~~~~~~ 196 (211)
T 3mp2_A 167 TGTTQNGHYMVDDI--EHG--YCVDGMGIKPLKK 196 (211)
T ss_dssp ESCTTTCEEEEEET--TTT--EEEETTEEECCCC
T ss_pred EcCCCCceEEEEec--ccc--eEEeCCceeEccc
Confidence 89999999999985 333 8999999998873
No 142
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=30.49 E-value=55 Score=32.58 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=44.9
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHH
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGK 395 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~ 395 (927)
..|.+=|.=.-|.||+||++=.|=++... + +.+..++.. -.|..|...
T Consensus 10 ~nG~~vLkq~dNNCwVNaa~l~LQ~~~~~----~-----------------------~~aw~~f~~-----Gd~~~fV~~ 57 (211)
T 3mp2_A 10 LNGKIILKQGDNNCWINACCYQLQAFDFF----N-----------------------NEAWEKFKK-----GDVMDFVNL 57 (211)
T ss_dssp ETTEEEECCCTTCHHHHHHHHHHTTCTTC----C-----------------------CHHHHHHTT-----TCCHHHHHH
T ss_pred ECCEEEEEccCCCcHHHHHHHHHHhcChh----H-----------------------HHHHHHHhC-----CChHHHHHH
Confidence 34666777778999999998877665443 1 111222212 235555554
Q ss_pred HHhhCCCCCCCCCCcHHHHHHHHH
Q 002408 396 LARFAPQFSGYNQHDSQELLAFLL 419 (927)
Q Consensus 396 l~~~~~~f~~~~QqDA~Efl~~LL 419 (927)
+-... ...-++--||+++|..||
T Consensus 58 ~Ya~~-~~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 58 CYAAT-TLARGHSGDAEYLLELML 80 (211)
T ss_dssp HHHHH-TCCTTSCCCHHHHHHHHH
T ss_pred HHHHc-CCCCCCCcCHHHHHHHHH
Confidence 43332 455678999999999998
No 143
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=30.32 E-value=1.4e+02 Score=25.54 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=39.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCc-ccccccCCCCeEEEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPA-ELISSIKDDEHIVAY 584 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~-~~~~~i~~~d~i~~~ 584 (927)
++.+.+..+.||.+|++.++...|+++....+ +|..++ +.|.. -.--.|.++..|..|
T Consensus 33 k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL---if~Gk~---LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 33 KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL---QKGGSV---LKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE---EETTEE---CCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE---EeCCEE---ccCcCCHHHcCCCCCCEEEEE
Confidence 45677888999999999999999987765433 345433 55532 222456777777665
No 144
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=30.17 E-value=43 Score=38.56 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=45.8
Q ss_pred eEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccc---cCCC---CccCChhhhhccCCc-eEEEEEE
Q 002408 176 TVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRST---SPLD---VSDQTLDDAMLQMDQ-DILLEVQ 242 (927)
Q Consensus 176 ~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~---~ll~---~~~~tl~d~~l~~~q-~ilve~~ 242 (927)
..+.+-+..|+.+|++.+.+.+|++.+.+|||.....+..+ .++. +...++.++....+. .+.||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~ 111 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETV 111 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEec
Confidence 46788899999999999999999999999999886554431 2221 122345554332222 5678864
No 145
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=29.51 E-value=66 Score=35.08 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred CceEEEeCccccHHHHHHHHHHHh---CCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE-EEEEEec
Q 002408 174 SQTVIRLSKKASTRQLYEKVCKLR---GIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI-LLEVQVD 244 (927)
Q Consensus 174 ~~~~~~iS~~~t~~~l~~~~~~~~---~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i-lve~~~~ 244 (927)
....+.++...||.+|++++...+ +++.++.||. |. + ..|.+ +++|.++++..+..| ++-.+..
T Consensus 18 k~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLi-y~----G-K~L~D-~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 18 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YA----G-KILSD-DVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp EEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEE-SS----S-SEECS-SSBTTTTCCCTTSCEEEEEECCC
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEE-EC----C-eecCC-cCCHHHcCCCCCCEEEEEEecCC
Confidence 344677889999999999999954 5888888875 32 2 33443 689999999988766 5555543
No 146
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=29.21 E-value=52 Score=35.14 Aligned_cols=64 Identities=8% Similarity=0.230 Sum_probs=45.2
Q ss_pred CCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceEEE
Q 002408 172 DNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239 (927)
Q Consensus 172 ~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~ilv 239 (927)
.+....+.++..+|+.+|++++....++++++-||.-. .-++ .++.+ +.+|.++++..+..|.+
T Consensus 13 ~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~--k~~G-k~l~D-~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 13 SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNL--KYKG-KTAAD-NVKISALELKPNFKLMM 76 (320)
T ss_dssp TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTC--BSSS-SBCCT-TSBTTSSCCC--CEEEE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeec--ccCC-cccCc-cccHHHcCCCCCCEEEE
Confidence 44456788999999999999999999999987776521 0112 23333 67899999988877654
No 147
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=27.50 E-value=1.4e+02 Score=27.10 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=41.5
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHh-----CCCC--cceEEEEecCCcccccCCCCccCChhhhhccCC
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLR-----GIEQ--EKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMD 234 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~-----~l~~--~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~ 234 (927)
+++-.........+.++..+|+.+|++++.... ++++ +..||- |.+ ..|+ .++||.++++..+
T Consensus 19 i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLI-y~G-----K~Le-D~~TLsdy~I~~~ 88 (126)
T 1se9_A 19 IKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLI-SAG-----KVLE-NSKTVKDYRSPVS 88 (126)
T ss_dssp EEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEE-ETT-----EECC-TTSBGGGGSCCTT
T ss_pred EEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEE-ECC-----eECc-CCCcHHHcCCCcC
Confidence 333333333333688999999999999997643 4664 566763 322 2344 4689999999876
No 148
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=27.10 E-value=2.5e+02 Score=23.37 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=36.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCccccc--ccCCCCeEEE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELIS--SIKDDEHIVA 583 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~~--~i~~~d~i~~ 583 (927)
.+.+.+..+.++.+|++.++...++.....-++ |+.+ .+.|. ..+. .|.+++.|++
T Consensus 13 ~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~---~~G~---~L~d~-~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 13 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI---FAGK---QLEDG-RTLSDYNIQKESTLHL 70 (96)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE---ETTE---ECCTT-SBTGGGTCCTTCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE---ECCE---ECCCC-CcHHHcCCCCCCEEEE
Confidence 356788899999999999999999876553332 4443 34443 2333 3555555543
No 149
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=26.17 E-value=85 Score=33.27 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=46.3
Q ss_pred CCCccccccCCCcchHHHHHHHHhCChH-HHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002408 316 KGGLAGLQNLGNTCFMNSALQCLVHTPD-LAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (927)
Q Consensus 316 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (927)
..|..=|.=--|.||+||++=.|=++.. |+. .+++++..++..+ .|..|..
T Consensus 99 ~~G~~vLkq~dNNCwVNaa~l~LQ~~~~~F~~-----------------------~~l~~aw~~f~~G-----d~~~FVa 150 (315)
T 2fe8_A 99 VGGLTSIKWADNNCYLSSVLLALQQLEVKFNA-----------------------PALQEAYYRARAG-----DAANFCA 150 (315)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHTSCCCBSS-----------------------HHHHHHHHHHHHT-----CCHHHHH
T ss_pred ECCEEEEeecCCccHHHHHHHHHHhcCCccCC-----------------------HHHHHHHHHHhCC-----ChHHHHH
Confidence 4566777777899999999877655422 121 1122222222222 3677776
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHH
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLL 419 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LL 419 (927)
.+-.... ..-++--||+++|..||
T Consensus 151 ~~Ya~~~-~~~G~~gDa~~~L~~Ll 174 (315)
T 2fe8_A 151 LILAYSN-KTVGELGDVRETMTHLL 174 (315)
T ss_dssp HHHHHTT-CCTTSCCCHHHHHHHHH
T ss_pred HHHHhcC-CCCCCCccHHHHHHHHH
Confidence 6654443 44678999999999883
No 150
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=25.40 E-value=1.2e+02 Score=26.57 Aligned_cols=45 Identities=7% Similarity=-0.135 Sum_probs=33.7
Q ss_pred EEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCc
Q 002408 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEG 550 (927)
Q Consensus 506 ~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~ 550 (927)
+.+.++-.|-......+.+.+....|+.+|++.+.+..|+.+...
T Consensus 23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~Q 67 (105)
T 4dbg_A 23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQ 67 (105)
T ss_dssp EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGE
T ss_pred EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHE
Confidence 334444444443446788999999999999999999999887654
No 151
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.32 E-value=2.5e+02 Score=22.29 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=26.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCceE
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGLL 552 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~ 552 (927)
.+.+.++.+.++.+|++.++...++.....-+
T Consensus 19 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL 50 (81)
T 2dzi_A 19 ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRL 50 (81)
T ss_dssp EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE
Confidence 45678889999999999999999987655433
No 152
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=21.51 E-value=20 Score=35.72 Aligned_cols=60 Identities=25% Similarity=0.353 Sum_probs=0.0
Q ss_pred cCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhhccCCceE
Q 002408 171 RDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDI 237 (927)
Q Consensus 171 ~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~l~~~q~i 237 (927)
.+.....+.|.+..++..|++..|+..+++++.+|+. |.+ . . + ..+.|++++.+.++..|
T Consensus 28 qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFL-FDG-q---R-I-~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 28 DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFL-YDG-I---R-I-QADQTPEDLDMEDNDII 87 (227)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEE-ECC-E---e-c-CCCCCHHHcCCCCCCEE
Confidence 3555678899999999999999999999999888865 322 1 1 2 23689999998877654
No 153
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=21.42 E-value=2e+02 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=30.8
Q ss_pred EEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCc
Q 002408 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEG 550 (927)
Q Consensus 505 ~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~ 550 (927)
.+.+.+-..+|. .+.+.+..+.++.+|++.++...|+.....
T Consensus 17 ~m~i~Vk~~~g~----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q 58 (91)
T 3v6c_B 17 SMQIFVNTLTGT----HITLEVEPSDTIENVKAKIQDKEGIPPDQQ 58 (91)
T ss_dssp SEEEEEECTTSC----EEEEEECTTCBHHHHHHHHHHHHCCCGGGC
T ss_pred eEEEEEEeCCCC----EEEEEECCCCCHHHHHHHHHhhhCCChhhE
Confidence 344444434443 467788999999999999999999876654
No 154
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=21.15 E-value=3.3e+02 Score=23.34 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=38.0
Q ss_pred EEEEeccCCCceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecC
Q 002408 165 LKLIDSRDNSQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFN 211 (927)
Q Consensus 165 l~i~~~~~~~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~ 211 (927)
+++++ +++....+.+=...|+++-+.++.+..+|.++.+.++....
T Consensus 16 irvhL-PNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~~~ 61 (96)
T 3ny5_A 16 VRVFL-PNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRIQD 61 (96)
T ss_dssp EEEEE-TTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEECC-
T ss_pred EEEEC-CCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEccC
Confidence 44443 56667788999999999999999999999999999998753
No 155
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=21.05 E-value=65 Score=29.66 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=28.3
Q ss_pred Eeec--cCCCCeEEEEEEeCCCCCEEEECCceeeecCcC
Q 002408 859 NHYG--GLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEG 895 (927)
Q Consensus 859 ~H~G--~l~~GHYtAy~k~~~~~~Wy~fnDs~V~~v~~~ 895 (927)
-|-| .-|.+|-+-|+- .++.||.+||+...+-+++
T Consensus 109 fhAgIflkg~eHAVFa~~--TS~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 109 FHAGIFLKGQEHAVFACV--TSNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp EEEEEEEETTTEEEEEEC--CTTSSEEEETTEEEECCCC
T ss_pred hhhheeecCCCceEEEEE--ccCceEEecccccccCCCC
Confidence 3556 457789998887 6888999999999998853
No 156
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=20.57 E-value=2.5e+02 Score=27.80 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=45.9
Q ss_pred ccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCCeeEEeecCCcccc--cccCCCCeEE
Q 002408 520 MPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELI--SSIKDDEHIV 582 (927)
Q Consensus 520 ~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~~--~~i~~~d~i~ 582 (927)
..+++.+++..|++++++.+.+.+++.....+-+-..+...-+..+.+++..+ ..|.+++.|+
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 34678889999999999999999999877667777766555566777665444 3455555544
No 157
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=20.56 E-value=2e+02 Score=23.53 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=29.8
Q ss_pred EEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCc
Q 002408 506 MTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEG 550 (927)
Q Consensus 506 ~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~ 550 (927)
+.+.+-..+|. .+.+.+..+.++.+|++.++...+++....
T Consensus 18 m~i~Vk~~~g~----~~~~~v~~~~tV~~lK~~i~~~~gip~~~q 58 (88)
T 4eew_A 18 LEVLVKTLDSQ----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQ 58 (88)
T ss_dssp EEEEEEETTSC----EEEEEEETTCBHHHHHHHHHHHHTCCGGGE
T ss_pred EEEEEEcCCCC----EEEEEECCCCCHHHHHHHHHHHhCCCHHHE
Confidence 44444444443 356788899999999999999999876554
No 158
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.24 E-value=31 Score=25.85 Aligned_cols=14 Identities=36% Similarity=1.134 Sum_probs=11.1
Q ss_pred CCCCCCCccCcccc
Q 002408 780 PDDMWYCPQCKEHR 793 (927)
Q Consensus 780 ~~n~w~C~~Ck~~~ 793 (927)
.+|.|.|..|+++-
T Consensus 8 ~eD~WkC~~C~k~N 21 (53)
T 2cr8_A 8 SEDEWQCTECKKFN 21 (53)
T ss_dssp CSCCEECSSSCCEE
T ss_pred CcceeecccccccC
Confidence 46789999999653
No 159
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=20.19 E-value=2.2e+02 Score=23.34 Aligned_cols=31 Identities=3% Similarity=0.024 Sum_probs=25.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHhhcCCCCCCce
Q 002408 521 PFTVTLMKHGCCKDLILALSTACCLKIDEGL 551 (927)
Q Consensus 521 ~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l 551 (927)
.+.+.++.+.|+.+|++.++...|+.....-
T Consensus 22 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr 52 (84)
T 2kk8_A 22 SFELEVDYRDTLLVVKQKIERSQHIPVSKQT 52 (84)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHHTCCGGGEE
T ss_pred EEEEEECCCChHHHHHHHHHHHHCcChHHEE
Confidence 4567889999999999999999998765543
Done!