Query 002411
Match_columns 926
No_of_seqs 389 out of 3065
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 23:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02563 aminoacyl-tRNA ligase 100.0 1E-194 3E-199 1765.6 75.5 852 50-923 66-963 (963)
2 TIGR00396 leuS_bact leucyl-tRN 100.0 1E-178 3E-183 1625.5 69.5 805 64-917 1-842 (842)
3 KOG0435 Leucyl-tRNA synthetase 100.0 1E-172 3E-177 1421.7 47.3 797 68-923 34-873 (876)
4 COG0495 LeuS Leucyl-tRNA synth 100.0 1E-170 3E-175 1499.6 62.5 799 62-916 3-814 (814)
5 PRK00390 leuS leucyl-tRNA synt 100.0 1E-169 2E-174 1545.5 68.8 798 61-917 2-805 (805)
6 COG0060 IleS Isoleucyl-tRNA sy 100.0 7E-136 2E-140 1212.3 35.4 677 56-852 10-800 (933)
7 COG0525 ValS Valyl-tRNA synthe 100.0 6E-130 1E-134 1147.4 51.5 619 61-854 2-718 (877)
8 PRK06039 ileS isoleucyl-tRNA s 100.0 2E-129 5E-134 1212.5 52.0 668 60-853 7-793 (975)
9 PRK05743 ileS isoleucyl-tRNA s 100.0 3E-128 6E-133 1194.0 48.7 669 56-852 11-789 (912)
10 PRK13804 ileS isoleucyl-tRNA s 100.0 8E-126 2E-130 1174.0 47.0 682 56-853 16-828 (961)
11 PTZ00427 isoleucine-tRNA ligas 100.0 4E-125 8E-130 1171.6 48.4 675 60-851 68-948 (1205)
12 TIGR00392 ileS isoleucyl-tRNA 100.0 9E-125 2E-129 1167.5 49.8 685 60-853 2-812 (861)
13 PLN02882 aminoacyl-tRNA ligase 100.0 5E-124 1E-128 1167.1 52.3 674 62-854 6-825 (1159)
14 PTZ00419 valyl-tRNA synthetase 100.0 3E-123 7E-128 1163.1 52.8 652 57-853 21-827 (995)
15 PLN02381 valyl-tRNA synthetase 100.0 2E-122 5E-127 1146.9 53.0 642 58-853 94-896 (1066)
16 PRK14900 valS valyl-tRNA synth 100.0 1E-121 3E-126 1142.9 53.2 611 58-849 13-736 (1052)
17 PRK13208 valS valyl-tRNA synth 100.0 6E-122 1E-126 1133.3 48.4 641 59-870 5-743 (800)
18 PLN02943 aminoacyl-tRNA ligase 100.0 4E-121 9E-126 1131.5 53.8 623 46-848 45-785 (958)
19 PLN02843 isoleucyl-tRNA synthe 100.0 3E-121 8E-126 1131.9 49.3 670 64-852 3-820 (974)
20 TIGR00422 valS valyl-tRNA synt 100.0 3E-120 7E-125 1125.5 54.4 615 61-853 2-719 (861)
21 PRK05729 valS valyl-tRNA synth 100.0 1E-119 3E-124 1119.1 52.7 607 59-851 4-712 (874)
22 PLN02959 aminoacyl-tRNA ligase 100.0 6E-114 1E-118 1075.0 48.2 675 61-848 10-893 (1084)
23 TIGR00395 leuS_arch leucyl-tRN 100.0 1E-113 3E-118 1065.9 45.9 660 68-852 2-795 (938)
24 PF00133 tRNA-synt_1: tRNA syn 100.0 1E-110 3E-115 999.8 21.9 527 72-723 1-601 (601)
25 PRK12300 leuS leucyl-tRNA synt 100.0 3E-107 6E-112 1005.5 41.6 621 110-853 1-750 (897)
26 KOG0433 Isoleucyl-tRNA synthet 100.0 1E-106 3E-111 903.6 28.4 678 62-852 28-815 (937)
27 KOG0432 Valyl-tRNA synthetase 100.0 2E-104 3E-109 905.1 41.0 644 43-851 24-829 (995)
28 KOG0434 Isoleucyl-tRNA synthet 100.0 8E-103 2E-107 863.0 34.0 676 60-854 4-814 (1070)
29 cd00817 ValRS_core catalytic c 100.0 1.3E-74 2.9E-79 655.1 25.7 362 94-722 1-382 (382)
30 PRK12267 methionyl-tRNA synthe 100.0 1.5E-72 3.2E-77 680.6 34.0 443 93-836 3-479 (648)
31 PRK12268 methionyl-tRNA synthe 100.0 8.2E-72 1.8E-76 665.7 35.1 457 94-848 3-522 (556)
32 KOG0437 Leucyl-tRNA synthetase 100.0 1.2E-72 2.7E-77 628.4 25.1 665 66-849 14-884 (1080)
33 PLN02224 methionine-tRNA ligas 100.0 1.5E-70 3.2E-75 646.3 34.6 443 92-836 67-547 (616)
34 TIGR00398 metG methionyl-tRNA 100.0 2.4E-69 5.3E-74 640.9 33.1 438 96-836 1-504 (530)
35 PLN02610 probable methionyl-tR 100.0 5.5E-69 1.2E-73 650.5 36.7 444 91-836 14-533 (801)
36 PRK11893 methionyl-tRNA synthe 100.0 7.5E-69 1.6E-73 635.8 36.5 441 94-836 1-477 (511)
37 PRK00133 metG methionyl-tRNA s 100.0 7.4E-69 1.6E-73 648.8 34.4 443 94-836 2-504 (673)
38 COG0143 MetG Methionyl-tRNA sy 100.0 3.9E-68 8.5E-73 611.5 34.4 444 93-841 4-518 (558)
39 cd00818 IleRS_core catalytic c 100.0 1.6E-64 3.5E-69 563.7 24.4 319 94-722 1-338 (338)
40 KOG0436 Methionyl-tRNA synthet 100.0 1.9E-57 4.1E-62 481.2 29.3 448 93-836 38-528 (578)
41 cd00668 Ile_Leu_Val_MetRS_core 100.0 1E-56 2.2E-61 498.0 24.9 297 95-722 1-312 (312)
42 cd00812 LeuRS_core catalytic c 100.0 4.5E-56 9.8E-61 491.7 23.1 304 95-723 1-313 (314)
43 cd00814 MetRS_core catalytic c 100.0 1.4E-55 3E-60 489.6 24.6 314 95-722 1-319 (319)
44 PF09334 tRNA-synt_1g: tRNA sy 100.0 1.4E-55 2.9E-60 498.8 17.0 340 96-732 1-376 (391)
45 PRK00260 cysS cysteinyl-tRNA s 100.0 1.5E-42 3.3E-47 401.6 23.0 352 91-804 21-374 (463)
46 PTZ00399 cysteinyl-tRNA-synthe 100.0 2.4E-39 5.3E-44 384.7 25.9 374 90-805 57-437 (651)
47 KOG1247 Methionyl-tRNA synthet 100.0 1.5E-39 3.3E-44 344.7 19.9 445 92-841 12-526 (567)
48 TIGR00435 cysS cysteinyl-tRNA 100.0 6.4E-39 1.4E-43 370.3 20.8 130 90-225 18-148 (465)
49 PRK14535 cysS cysteinyl-tRNA s 100.0 1.5E-38 3.2E-43 367.1 23.1 351 91-803 246-613 (699)
50 PRK12418 cysteinyl-tRNA synthe 100.0 1.7E-38 3.7E-43 353.4 20.0 124 93-223 9-137 (384)
51 PLN02946 cysteine-tRNA ligase 100.0 3.6E-38 7.8E-43 363.6 19.7 128 90-223 77-204 (557)
52 TIGR03447 mycothiol_MshC cyste 100.0 5.1E-38 1.1E-42 350.7 20.0 124 92-222 35-163 (411)
53 PRK14536 cysS cysteinyl-tRNA s 100.0 6.6E-37 1.4E-41 350.1 23.7 367 90-802 20-404 (490)
54 PF13603 tRNA-synt_1_2: Leucyl 100.0 1.6E-37 3.4E-42 311.5 14.5 183 282-477 1-185 (185)
55 PRK14534 cysS cysteinyl-tRNA s 100.0 6.8E-34 1.5E-38 323.6 24.4 127 92-224 20-156 (481)
56 COG0215 CysS Cysteinyl-tRNA sy 100.0 4.1E-34 8.8E-39 317.7 21.7 352 90-802 19-373 (464)
57 cd00672 CysRS_core catalytic c 100.0 3.7E-30 8E-35 267.3 15.6 94 91-189 18-112 (213)
58 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.9E-31 4.2E-36 283.3 5.9 128 90-223 5-133 (300)
59 KOG2007 Cysteinyl-tRNA synthet 100.0 1.4E-29 3.1E-34 276.0 17.7 365 90-804 52-424 (586)
60 cd00674 LysRS_core_class_I cat 99.9 1.2E-25 2.6E-30 248.4 15.7 114 93-212 18-150 (353)
61 PRK01611 argS arginyl-tRNA syn 99.9 1.5E-23 3.2E-28 246.8 25.2 120 92-214 109-229 (507)
62 PRK00750 lysK lysyl-tRNA synth 99.9 4.8E-22 1E-26 232.2 13.8 111 94-209 23-153 (510)
63 TIGR00467 lysS_arch lysyl-tRNA 99.7 1.6E-17 3.5E-22 192.6 16.5 86 94-182 18-121 (515)
64 TIGR00456 argS arginyl-tRNA sy 99.7 3.9E-15 8.5E-20 177.6 30.6 124 681-805 370-524 (566)
65 cd00671 ArgRS_core catalytic c 99.6 4.4E-16 9.5E-21 163.1 11.1 119 101-225 7-125 (212)
66 cd07961 Anticodon_Ia_Ile_ABEc 99.6 5E-15 1.1E-19 151.8 11.3 129 722-851 1-163 (183)
67 cd07959 Anticodon_Ia_Leu_AEc A 99.4 4.1E-13 8.8E-18 127.0 9.7 107 722-833 1-117 (117)
68 cd07960 Anticodon_Ia_Ile_BEm A 99.4 7.3E-13 1.6E-17 135.4 11.9 127 723-852 2-161 (180)
69 cd07958 Anticodon_Ia_Leu_BEm A 99.4 8.5E-13 1.8E-17 124.6 10.4 110 722-833 1-117 (117)
70 COG0018 ArgS Arginyl-tRNA synt 99.4 1.1E-10 2.5E-15 137.3 28.9 163 605-805 338-535 (577)
71 PF08264 Anticodon_1: Anticodo 99.3 5.4E-13 1.2E-17 132.5 2.7 89 763-852 1-115 (153)
72 PRK12451 arginyl-tRNA syntheta 99.3 3E-10 6.5E-15 135.4 25.9 125 665-805 362-522 (562)
73 cd00802 class_I_aaRS_core cata 99.3 6.2E-12 1.4E-16 123.5 7.6 75 100-175 3-77 (143)
74 cd07962 Anticodon_Ia_Val Antic 99.1 2.3E-10 4.9E-15 111.3 10.4 112 722-833 1-135 (135)
75 cd07957 Anticodon_Ia_Met Antic 99.1 7.8E-10 1.7E-14 106.2 11.8 105 725-833 4-129 (129)
76 PLN02286 arginine-tRNA ligase 99.1 4.5E-08 9.9E-13 117.0 28.6 129 665-805 368-537 (576)
77 PF01921 tRNA-synt_1f: tRNA sy 99.0 3.2E-10 6.8E-15 124.7 5.7 85 96-182 24-127 (360)
78 COG1384 LysS Lysyl-tRNA synthe 98.5 2.1E-06 4.5E-11 97.4 16.1 87 95-182 19-124 (521)
79 PF00750 tRNA-synt_1d: tRNA sy 98.3 2.1E-06 4.5E-11 97.2 10.1 120 93-215 19-194 (354)
80 cd07375 Anticodon_Ia_like Anti 98.3 2.1E-06 4.5E-11 80.5 8.6 99 724-822 1-117 (117)
81 cd09287 GluRS_non_core catalyt 98.2 2.5E-06 5.5E-11 89.9 7.2 91 102-213 7-97 (240)
82 PRK04156 gltX glutamyl-tRNA sy 98.0 1.9E-05 4E-10 93.0 9.3 97 97-214 102-198 (567)
83 TIGR00463 gltX_arch glutamyl-t 97.6 9.8E-05 2.1E-09 86.9 7.7 95 97-214 94-188 (560)
84 PLN03233 putative glutamate-tR 97.4 0.00043 9.3E-09 80.8 8.0 95 97-214 12-106 (523)
85 PLN02907 glutamate-tRNA ligase 97.3 0.00051 1.1E-08 84.0 8.9 94 97-213 214-307 (722)
86 TIGR03838 queuosine_YadB gluta 97.3 0.00043 9.3E-09 74.9 6.8 90 102-214 6-96 (272)
87 PRK12558 glutamyl-tRNA synthet 97.3 0.00049 1.1E-08 79.3 7.4 91 101-214 7-97 (445)
88 PTZ00402 glutamyl-tRNA synthet 97.3 0.00062 1.4E-08 80.3 8.0 93 97-212 53-146 (601)
89 PTZ00437 glutaminyl-tRNA synth 97.2 0.00096 2.1E-08 78.1 8.5 94 98-214 53-146 (574)
90 PF00749 tRNA-synt_1c: tRNA sy 97.1 0.00073 1.6E-08 75.1 6.7 91 102-214 7-97 (314)
91 TIGR00440 glnS glutaminyl-tRNA 97.1 0.00091 2E-08 78.2 7.6 92 101-214 5-96 (522)
92 cd00807 GlnRS_core catalytic c 97.1 0.0012 2.6E-08 69.7 7.7 90 101-213 6-95 (238)
93 PRK05710 glutamyl-Q tRNA(Asp) 97.0 0.001 2.2E-08 72.8 6.5 94 98-214 7-101 (299)
94 COG0008 GlnS Glutamyl- and glu 97.0 0.0017 3.6E-08 75.4 8.2 95 97-214 10-105 (472)
95 PRK12410 glutamylglutaminyl-tR 97.0 0.0014 3E-08 75.2 7.2 90 102-214 5-94 (433)
96 PRK05347 glutaminyl-tRNA synth 97.0 0.0018 3.8E-08 76.0 7.9 96 97-214 30-125 (554)
97 TIGR00464 gltX_bact glutamyl-t 96.9 0.0017 3.6E-08 76.2 7.3 90 102-214 7-97 (470)
98 PRK14895 gltX glutamyl-tRNA sy 96.8 0.003 6.5E-08 73.8 7.7 93 99-214 7-100 (513)
99 PRK14703 glutaminyl-tRNA synth 96.8 0.0028 6.1E-08 77.5 7.7 95 97-214 32-127 (771)
100 cd00808 GluRS_core catalytic c 96.7 0.0038 8.2E-08 66.3 7.4 86 101-209 6-100 (239)
101 cd00418 GlxRS_core catalytic c 96.7 0.0031 6.7E-08 66.5 6.7 85 102-209 7-92 (230)
102 PLN02627 glutamyl-tRNA synthet 96.7 0.0036 7.7E-08 73.3 7.3 94 98-214 47-149 (535)
103 KOG1147 Glutamyl-tRNA syntheta 96.6 0.0056 1.2E-07 69.5 7.9 99 97-218 201-299 (712)
104 KOG4426 Arginyl-tRNA synthetas 96.5 0.025 5.3E-07 62.8 12.1 129 95-229 188-370 (656)
105 PLN02859 glutamine-tRNA ligase 96.5 0.0067 1.4E-07 73.7 8.4 95 97-214 265-359 (788)
106 PRK01406 gltX glutamyl-tRNA sy 96.3 0.0075 1.6E-07 70.8 7.1 93 99-214 7-107 (476)
107 PLN02882 aminoacyl-tRNA ligase 95.1 0.021 4.7E-07 73.9 4.9 78 195-286 383-462 (1159)
108 PRK06039 ileS isoleucyl-tRNA s 94.6 0.039 8.4E-07 70.9 5.5 78 195-286 362-441 (975)
109 PF00750 tRNA-synt_1d: tRNA sy 94.6 0.014 3.1E-07 66.2 1.4 35 665-707 277-312 (354)
110 PTZ00427 isoleucine-tRNA ligas 94.3 0.058 1.3E-06 69.9 6.1 77 196-286 488-566 (1205)
111 PRK14900 valS valyl-tRNA synth 94.1 0.07 1.5E-06 68.8 6.2 78 195-286 331-411 (1052)
112 PRK13208 valS valyl-tRNA synth 94.0 0.083 1.8E-06 66.7 6.5 78 195-286 314-392 (800)
113 TIGR00422 valS valyl-tRNA synt 93.8 0.081 1.8E-06 67.3 6.0 78 195-286 314-394 (861)
114 COG0060 IleS Isoleucyl-tRNA sy 93.8 0.078 1.7E-06 66.0 5.6 76 196-285 375-451 (933)
115 TIGR00392 ileS isoleucyl-tRNA 93.8 0.088 1.9E-06 67.0 6.2 77 196-286 381-458 (861)
116 PRK05729 valS valyl-tRNA synth 93.2 0.11 2.4E-06 66.1 5.7 77 196-286 317-396 (874)
117 cd00395 Tyr_Trp_RS_core cataly 92.6 0.11 2.5E-06 56.6 4.1 69 105-179 8-79 (273)
118 PRK05743 ileS isoleucyl-tRNA s 91.9 0.23 4.9E-06 63.4 6.2 78 195-286 369-449 (912)
119 PRK04156 gltX glutamyl-tRNA sy 91.7 0.21 4.6E-06 59.5 5.2 63 661-733 326-404 (567)
120 KOG1148 Glutaminyl-tRNA synthe 91.3 0.44 9.6E-06 55.3 6.8 95 97-214 249-343 (764)
121 cd00802 class_I_aaRS_core cata 91.1 0.17 3.7E-06 49.5 3.1 12 603-614 94-105 (143)
122 PLN02943 aminoacyl-tRNA ligase 91.0 0.35 7.7E-06 62.0 6.5 77 196-286 367-446 (958)
123 cd00805 TyrRS_core catalytic c 90.7 0.11 2.3E-06 56.7 1.4 71 104-180 8-81 (269)
124 TIGR00395 leuS_arch leucyl-tRN 90.5 1.2 2.7E-05 57.0 10.7 161 107-286 301-482 (938)
125 PTZ00419 valyl-tRNA synthetase 90.4 0.45 9.8E-06 61.5 6.7 79 195-287 360-441 (995)
126 PRK13804 ileS isoleucyl-tRNA s 90.2 0.34 7.3E-06 62.2 5.3 78 195-286 400-485 (961)
127 PLN02843 isoleucyl-tRNA synthe 90.2 0.39 8.5E-06 61.6 5.9 76 197-286 388-464 (974)
128 PF00133 tRNA-synt_1: tRNA syn 89.6 0.29 6.3E-06 59.7 3.9 78 195-286 334-412 (601)
129 PRK13354 tyrosyl-tRNA syntheta 89.3 0.16 3.4E-06 58.7 1.2 79 94-179 32-112 (410)
130 COG0495 LeuS Leucyl-tRNA synth 89.2 0.015 3.3E-07 71.3 -7.4 100 308-418 207-312 (814)
131 KOG1195 Arginyl-tRNA synthetas 89.1 3.1 6.8E-05 48.0 11.2 139 69-215 87-279 (567)
132 PRK12556 tryptophanyl-tRNA syn 89.1 0.32 6.9E-06 54.6 3.4 66 105-182 12-77 (332)
133 PRK05912 tyrosyl-tRNA syntheta 87.5 0.26 5.5E-06 57.0 1.5 30 681-712 230-259 (408)
134 PLN02381 valyl-tRNA synthetase 87.5 0.8 1.7E-05 59.3 6.0 79 195-287 427-511 (1066)
135 PF00579 tRNA-synt_1b: tRNA sy 86.8 0.42 9.2E-06 52.8 2.6 41 94-140 4-44 (292)
136 PRK12284 tryptophanyl-tRNA syn 86.3 0.61 1.3E-05 53.6 3.5 22 601-623 147-168 (431)
137 PRK12300 leuS leucyl-tRNA synt 86.1 1.3 2.9E-05 56.5 6.9 78 194-286 354-435 (897)
138 cd00418 GlxRS_core catalytic c 85.7 1.3 2.8E-05 47.0 5.4 42 665-715 143-185 (230)
139 PRK12285 tryptophanyl-tRNA syn 85.2 3.9 8.4E-05 46.6 9.3 76 93-182 64-139 (368)
140 PRK08560 tyrosyl-tRNA syntheta 84.7 0.92 2E-05 51.0 4.0 21 601-622 167-187 (329)
141 PLN02486 aminoacyl-tRNA ligase 81.9 7 0.00015 44.8 9.6 78 93-182 71-148 (383)
142 PTZ00126 tyrosyl-tRNA syntheta 80.7 1.7 3.7E-05 49.7 4.2 21 601-622 209-229 (383)
143 COG0162 TyrS Tyrosyl-tRNA synt 79.8 0.63 1.4E-05 53.2 0.4 16 601-616 179-194 (401)
144 COG0525 ValS Valyl-tRNA synthe 77.7 3.6 7.7E-05 51.3 5.9 78 196-287 315-395 (877)
145 TIGR00233 trpS tryptophanyl-tR 76.5 1.7 3.6E-05 48.8 2.5 22 601-623 138-159 (328)
146 PLN02959 aminoacyl-tRNA ligase 76.0 3.9 8.4E-05 53.3 5.9 76 195-286 494-572 (1084)
147 cd07956 Anticodon_Ia_Arg Antic 75.9 18 0.00039 35.8 9.5 103 700-804 2-114 (156)
148 PF01927 Mut7-C: Mut7-C RNAse 74.3 4.2 9.2E-05 40.0 4.4 31 124-156 12-42 (147)
149 TIGR00234 tyrS tyrosyl-tRNA sy 74.2 2.9 6.2E-05 47.9 3.6 39 97-140 32-70 (377)
150 PRK12282 tryptophanyl-tRNA syn 73.3 2.6 5.6E-05 47.4 3.0 16 681-696 194-209 (333)
151 cd00806 TrpRS_core catalytic c 73.2 3.5 7.5E-05 45.3 3.9 65 104-180 7-71 (280)
152 PRK00927 tryptophanyl-tRNA syn 73.1 2.6 5.6E-05 47.5 2.9 21 601-622 137-157 (333)
153 PRK12285 tryptophanyl-tRNA syn 73.0 2.5 5.3E-05 48.2 2.7 20 602-622 203-222 (368)
154 cd00806 TrpRS_core catalytic c 72.2 8.3 0.00018 42.3 6.5 25 682-711 190-215 (280)
155 cd00395 Tyr_Trp_RS_core cataly 70.9 6.4 0.00014 43.0 5.3 14 681-694 196-209 (273)
156 COG0180 TrpS Tryptophanyl-tRNA 69.1 3.8 8.3E-05 45.3 3.0 75 95-182 5-80 (314)
157 COG1656 Uncharacterized conser 67.0 7.6 0.00016 38.5 4.2 94 124-234 18-116 (165)
158 cd00808 GluRS_core catalytic c 65.2 4.8 0.00011 43.0 2.8 34 681-715 160-194 (239)
159 PRK13354 tyrosyl-tRNA syntheta 64.8 9.8 0.00021 44.1 5.4 30 681-712 228-257 (410)
160 PRK12283 tryptophanyl-tRNA syn 63.8 3.2 7E-05 47.4 1.2 77 104-194 10-88 (398)
161 PRK08560 tyrosyl-tRNA syntheta 63.2 16 0.00034 41.2 6.5 74 95-182 30-103 (329)
162 COG0180 TrpS Tryptophanyl-tRNA 61.9 29 0.00063 38.5 8.1 14 681-694 195-210 (314)
163 cd00805 TyrRS_core catalytic c 57.2 8.1 0.00017 42.2 2.8 28 681-711 193-220 (269)
164 KOG0434 Isoleucyl-tRNA synthet 56.9 12 0.00026 44.8 4.2 75 197-285 374-450 (1070)
165 TIGR00233 trpS tryptophanyl-tR 56.3 31 0.00068 38.7 7.4 73 97-182 4-76 (328)
166 COG5270 PUA domain (predicted 56.0 7.4 0.00016 39.1 2.0 41 206-251 2-42 (202)
167 PRK12284 tryptophanyl-tRNA syn 55.1 20 0.00044 41.4 5.7 97 104-213 10-107 (431)
168 PRK05912 tyrosyl-tRNA syntheta 54.7 18 0.00039 42.0 5.2 75 95-180 33-113 (408)
169 PTZ00348 tyrosyl-tRNA syntheta 52.0 13 0.00029 45.6 3.8 22 601-623 174-195 (682)
170 COG0162 TyrS Tyrosyl-tRNA synt 45.3 21 0.00046 41.1 3.8 73 94-175 33-108 (401)
171 PRK00927 tryptophanyl-tRNA syn 44.6 35 0.00076 38.5 5.4 65 104-182 9-73 (333)
172 PRK12410 glutamylglutaminyl-tR 41.7 23 0.0005 41.2 3.4 45 661-715 222-267 (433)
173 cd07955 Anticodon_Ia_Cys_like 40.6 2.3E+02 0.005 24.7 8.8 73 725-818 2-79 (81)
174 PF09190 DALR_2: DALR domain; 40.0 38 0.00082 28.0 3.6 27 776-802 1-28 (63)
175 TIGR00464 gltX_bact glutamyl-t 39.9 24 0.00053 41.7 3.4 41 665-714 231-272 (470)
176 TIGR00373 conserved hypothetic 39.4 25 0.00053 35.1 2.8 96 147-247 30-140 (158)
177 PRK12283 tryptophanyl-tRNA syn 38.9 63 0.0014 37.2 6.3 27 681-712 262-288 (398)
178 PLN02886 aminoacyl-tRNA ligase 38.2 41 0.00088 38.6 4.6 86 104-204 54-140 (389)
179 KOG1149 Glutamyl-tRNA syntheta 38.0 39 0.00085 38.7 4.3 92 102-214 39-137 (524)
180 COG3171 Uncharacterized protei 36.8 69 0.0015 29.7 4.9 49 172-220 24-73 (119)
181 PRK12556 tryptophanyl-tRNA syn 36.6 79 0.0017 35.6 6.6 14 681-694 200-213 (332)
182 PTZ00126 tyrosyl-tRNA syntheta 35.4 94 0.002 35.7 7.1 76 96-182 67-142 (383)
183 PLN03233 putative glutamate-tR 34.9 34 0.00074 40.7 3.5 52 681-732 244-311 (523)
184 PRK12558 glutamyl-tRNA synthet 34.8 33 0.00073 40.1 3.4 45 660-714 226-271 (445)
185 PF13240 zinc_ribbon_2: zinc-r 34.5 22 0.00047 23.3 1.0 22 220-244 1-22 (23)
186 PRK01406 gltX glutamyl-tRNA sy 33.1 33 0.00071 40.7 3.0 41 665-714 241-282 (476)
187 PLN02886 aminoacyl-tRNA ligase 33.0 45 0.00096 38.3 3.9 22 601-623 183-204 (389)
188 KOG2145 Cytoplasmic tryptophan 31.9 34 0.00074 37.0 2.5 28 92-120 82-109 (397)
189 cd09287 GluRS_non_core catalyt 31.6 50 0.0011 35.3 3.8 49 681-729 164-228 (240)
190 TIGR00440 glnS glutaminyl-tRNA 30.9 44 0.00095 39.9 3.5 36 681-716 239-290 (522)
191 cd00807 GlnRS_core catalytic c 29.7 61 0.0013 34.6 4.0 49 681-729 162-226 (238)
192 PRK14895 gltX glutamyl-tRNA sy 29.5 51 0.0011 39.2 3.8 44 661-714 227-271 (513)
193 TIGR00234 tyrS tyrosyl-tRNA sy 29.3 66 0.0014 36.9 4.5 15 681-695 219-233 (377)
194 PLN02627 glutamyl-tRNA synthet 28.5 55 0.0012 39.1 3.8 45 660-714 279-324 (535)
195 cd00671 ArgRS_core catalytic c 27.9 48 0.001 34.6 2.9 17 665-689 196-212 (212)
196 PRK05347 glutaminyl-tRNA synth 26.9 58 0.0013 39.1 3.6 52 681-732 268-335 (554)
197 smart00531 TFIIE Transcription 26.9 44 0.00095 32.9 2.2 65 183-247 60-135 (147)
198 PF00579 tRNA-synt_1b: tRNA sy 26.4 1.2E+02 0.0027 33.3 6.0 21 601-622 148-168 (292)
199 COG0008 GlnS Glutamyl- and glu 26.4 56 0.0012 38.5 3.3 39 665-712 240-279 (472)
200 smart00840 DALR_2 This DALR do 26.3 59 0.0013 25.8 2.5 27 777-803 2-29 (56)
201 PLN02486 aminoacyl-tRNA ligase 25.7 30 0.00065 39.7 0.9 26 682-712 264-290 (383)
202 PTZ00437 glutaminyl-tRNA synth 23.9 50 0.0011 39.7 2.3 53 680-732 283-351 (574)
203 PHA02096 hypothetical protein 21.7 60 0.0013 28.0 1.7 52 863-914 18-72 (103)
204 PF09862 DUF2089: Protein of u 20.9 59 0.0013 30.5 1.7 36 221-259 1-36 (113)
205 COG2176 PolC DNA polymerase II 20.4 1.1E+02 0.0024 39.6 4.3 48 552-617 939-986 (1444)
No 1
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-194 Score=1765.59 Aligned_cols=852 Identities=81% Similarity=1.342 Sum_probs=771.2
Q ss_pred HHHHhhhhhhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHH
Q 002411 50 IEEQKQKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR 129 (926)
Q Consensus 50 ~~~~~~~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r 129 (926)
.+++.+.++++++.|||.+||++||++|+++++|+...+.+.++++|||++|||||||.+|||||+++|+++|+++||+|
T Consensus 66 ~~~~~~~~~~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~R 145 (963)
T PLN02563 66 TSTTAKTTPAAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKR 145 (963)
T ss_pred hhhhhhcccccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 33455555678999999999999999999999999764345678999999999999994499999999999999999999
Q ss_pred HcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCC
Q 002411 130 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209 (926)
Q Consensus 130 ~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~G 209 (926)
|+||+|+|++||||||+|||++|++.|.+|++++.++++.|++||++||+++||++++.|+||.|++++||+|.+|+++|
T Consensus 146 m~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~G 225 (963)
T PLN02563 146 MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRG 225 (963)
T ss_pred hcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCC
Q 002411 210 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE 289 (926)
Q Consensus 210 liy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~ 289 (926)
|||++.++|+|||.|+|+||++||++++|++||.++++++++||||+|++|+++|+++|+.++||++++.||+||||||+
T Consensus 226 liY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~ 305 (963)
T PLN02563 226 LAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSE 305 (963)
T ss_pred CEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhcc
Q 002411 290 GAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKT 369 (926)
Q Consensus 290 ~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 369 (926)
|++|+|++.+.+|...+.+|+|||||||||||++||+|||+|+|+..++..++...+++|+....+.+++++....++++
T Consensus 306 g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~ 385 (963)
T PLN02563 306 GAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKT 385 (963)
T ss_pred eEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceec
Confidence 99999998643221123689999999999999999999999999987766555666788998877777776655556789
Q ss_pred ccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEe
Q 002411 370 GVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIV 449 (926)
Q Consensus 370 ~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~ 449 (926)
|.|+|.+++||++|+.+||+.++||++++|||+||+|||||++||++|++||||++++|++.|+......+.|.++|+|+
T Consensus 386 g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ 465 (963)
T PLN02563 386 GVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIV 465 (963)
T ss_pred ccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999764322222346899999999
Q ss_pred ccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCC
Q 002411 450 NSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLP 529 (926)
Q Consensus 450 ~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp 529 (926)
|++. .+.+|+|+.+++|+++|+++|++.|.++++++|++||||||||||||+|||+|||++||+++++++++||+.||
T Consensus 466 ns~~--~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lp 543 (963)
T PLN02563 466 NSSS--SGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTLP 543 (963)
T ss_pred cCCC--cccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccch
Confidence 8753 12458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecc
Q 002411 530 ELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 609 (926)
Q Consensus 530 ~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G 609 (926)
+++++.+.|.|.+||..+.+|+++.||.||++++||||||||||||||||++|++|.+++++|++...++|+|||+|+||
T Consensus 544 e~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG 623 (963)
T PLN02563 544 ELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGG 623 (963)
T ss_pred hhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeecc
Confidence 98888888999999999999999999999999999999999999999999999999998999998888899999999999
Q ss_pred cchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEec---------cCCc------
Q 002411 610 AEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMK---------DNPN------ 674 (926)
Q Consensus 610 ~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~---------~~~~------ 674 (926)
+||+++||||+||||++++.. +. ..+..||++|+. ||||++ ++|.
T Consensus 624 ~dhailHLlY~Rfw~~~l~~~-----------------g~-~~~~ePfk~ll~--qGmVl~~~~~~~~~d~~G~~~~~~~ 683 (963)
T PLN02563 624 AEHAVLHLLYARFWHKVLYDI-----------------GV-VSTKEPFQCLVN--QGMILGEVEYTAFKDSDGEYVSADT 683 (963)
T ss_pred HHHHhhHhHHHHHHHHHHHHh-----------------hc-cCCcccHHHHhc--cceeecCccccceecCCCcCccccc
Confidence 999999999999999886543 11 235799999998 899997 4322
Q ss_pred -------------------------------cccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCC
Q 002411 675 -------------------------------IRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 723 (926)
Q Consensus 675 -------------------------------~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~ 723 (926)
+.|...++||||||||||+|.++|++||||+||||+|++++++++..|+
T Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~ 763 (963)
T PLN02563 684 ADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWS 763 (963)
T ss_pred ccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccC
Confidence 1223345599999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcc
Q 002411 724 TSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKW 803 (926)
Q Consensus 724 ~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~ 803 (926)
++++.+++|||+|+|+++......+..+.+.........+.++++++++++++|+++|++|+|++|++++|+|+|.+++|
T Consensus 764 ~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~ 843 (963)
T PLN02563 764 TSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKW 843 (963)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999865321111121111111224578899999999999999999999999999999999999988
Q ss_pred ccchHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccCCCCceEEeEEEeceeEeEEEccCCCCHHHHH
Q 002411 804 EKHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAF 883 (926)
Q Consensus 804 ~~~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~ 883 (926)
....+++++.+++||+|||||+|||||+.|+..+||+.++||++++.++.+++++++||||||+|++|+++.++++|+++
T Consensus 844 ~~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~~sv~~~~WP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~ 923 (963)
T PLN02563 844 DKVPREAIEPFVLLLSPYAPHLAEELWFRLGHSNSLAYEPWPEANPSYLVDDTVVLPVQINGKTRGTIEVEEGCSEDDAF 923 (963)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCCCeeeeCCCCCCCHHHhhcCceEEEEEECCEEeeEEEeCCCCCHHHHH
Confidence 76678999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHhHHhhhCCCCeeEEEEeCCcEEEEEecCCcccc
Q 002411 884 KLASLDEKLSKFLDGKSIKKRIYVPGRILNVILDRQNIKA 923 (926)
Q Consensus 884 ~la~~~~~~~k~l~~k~i~kvi~v~~kivN~v~~~~~~~~ 923 (926)
++|+++++++++|+||+|+|+|+|||||||||++.+++++
T Consensus 924 ~~a~~~~~v~~~l~~k~i~K~I~vp~kivNiV~~~~~~~~ 963 (963)
T PLN02563 924 ALASQDEKLSKYLDGKEIKKRIYVPGKILNVILKQQNVKV 963 (963)
T ss_pred HHHhcCHHHHHHhCCCCceEEEEECCcEEEEEeCCCcCCC
Confidence 9999999999999999999999999999999999999875
No 2
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=1.3e-178 Score=1625.49 Aligned_cols=805 Identities=52% Similarity=0.933 Sum_probs=726.6
Q ss_pred CCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 002411 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (926)
Q Consensus 64 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~ 143 (926)
|||.++|++||++|+++++|+... +.++++||+++|||||||. |||||+++|+++|+++||+||+||+|+|++||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~--~~~k~k~~v~~~pPy~nG~-lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~ 77 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTD--DSNKPKYYILDMFPYPSGA-LHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDA 77 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCC--CCCCCCEEEEcCCCCCCCc-cccchhHHHHHHHHHHHHHHhcCCceeccCCcCC
Confidence 899999999999999999999763 4578899999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCC
Q 002411 144 FGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (926)
Q Consensus 144 ~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~ 223 (926)
||+|||++|++.|++|.+++.++++.|+++|++||+++||++++.|+||.|+++++|+|.+|+++|+||++.++|+|||.
T Consensus 78 ~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~ 157 (842)
T TIGR00396 78 FGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPN 157 (842)
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCchhhc-cCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-CcHHHHHHHHhhhccCCCceEEEEeecCC
Q 002411 224 LGTVLANEEVV-DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSD 301 (926)
Q Consensus 224 ~~t~ls~~ev~-~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~ 301 (926)
|+|+||++||. +|+|++||.++++++++||||+|++|+++|+++|+.++ ||++++.||+||||+|.|++|+|++.+
T Consensus 158 ~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~-- 235 (842)
T TIGR00396 158 DGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIAD-- 235 (842)
T ss_pred CCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCC--
Confidence 99999999996 48999999999999999999999999999999999986 999999999999999999999999842
Q ss_pred CCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCC
Q 002411 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPA 381 (926)
Q Consensus 302 ~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~ 381 (926)
.+.+|+||||||||||||+||||||+|+|+..+.. ....++.|++.....+..++....+.++|.|+|++++||+
T Consensus 236 ---~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 310 (842)
T TIGR00396 236 ---HKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE--NNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPL 310 (842)
T ss_pred ---CCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc--chHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCC
Confidence 13589999999999999999999999999876532 3345677877766655555555557789999999999999
Q ss_pred CCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccC
Q 002411 382 SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDIN 461 (926)
Q Consensus 382 ~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~ 461 (926)
+++.+||+.++||++++|||+||+|||||++||++|++||||++++|++.+. +....+|+++|++++++ .|+
T Consensus 311 ~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~--~~~~~~~~~~G~~~~~~------~~~ 382 (842)
T TIGR00396 311 TGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDPAGK--NLKTQAFTEDGVLVNSG------EFN 382 (842)
T ss_pred CCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCCccc--ccccccccCCceEecch------hcC
Confidence 9999999999999999999999999999999999999999999999986432 12234688899999864 499
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCC
Q 002411 462 GLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (926)
Q Consensus 462 gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~ 541 (926)
|+.+.+|+++|+++|++.|.+.+.++|+|||||||||||||+|||+|||++|| .+++++++||+.+|+. +.+.|.|.
T Consensus 383 Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g-~~~v~~~~lp~~l~~~--~~~~~~~~ 459 (842)
T TIGR00396 383 GLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGG-AVPVPEEDLPVILPEL--VNYDPDGN 459 (842)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCC-eEeCcchhcchhhhhh--hhccCCCC
Confidence 99999999999999999999999999999999999999999999999998876 5578889999999964 34456667
Q ss_pred CCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhh
Q 002411 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYAR 621 (926)
Q Consensus 542 ~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~r 621 (926)
+|+..+.+|+.+.||.||++++||+|||||||||||||+||++|.+...++++...++|+|+|+|+||+||+++||||+|
T Consensus 460 ~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaR 539 (842)
T TIGR00396 460 SPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYAR 539 (842)
T ss_pred CchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999987778887777899999999999999999999999
Q ss_pred hhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEec----cCCccccccccc---------------
Q 002411 622 FWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMK----DNPNIRLIARAH--------------- 682 (926)
Q Consensus 622 fw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~----~~~~~~~~~~G~--------------- 682 (926)
|||++++... ...+..||++|++ ||||++ ++ |+
T Consensus 540 f~~~~l~~~~------------------~~~~~~Pfk~l~~--~G~Vl~~~~~~~--------G~~~~~~~~~~~~~~~~ 591 (842)
T TIGR00396 540 FWHKFLYDIG------------------YVSTKEPFKKLIN--QGMVLGFYYPPN--------GKSPPDELTERDEKAKD 591 (842)
T ss_pred HHHHHHHhcc------------------ccCCCccHHHHhc--cceEEeeeecCC--------CCccChhhhcccccccc
Confidence 9997755321 1246799999998 899998 54 55
Q ss_pred ------------cccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 002411 683 ------------KMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGT 750 (926)
Q Consensus 683 ------------KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~ 750 (926)
|||||+||+|+|.++|++||||++|||+|++++++++++|+++.++++.++++|+|+++.........
T Consensus 592 ~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~ 671 (842)
T TIGR00396 592 KSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDG 671 (842)
T ss_pred ccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999988899999999999999999999999987432100011
Q ss_pred CCCCcccCCCCchHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHhhchhhHHHH
Q 002411 751 FKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTR-FNTGISAMMEFINAAYKWEK--HPRKIIEPFILLLAPYAPHMSE 827 (926)
Q Consensus 751 ~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~-f~~ai~~l~~f~~~~~~~~~--~~~~~l~~l~~lLaP~~P~~aE 827 (926)
+...........|+|+++++++++++|+++|++|+ |++|++++|+|+|.++++.. .++++++.+++|||||+||+||
T Consensus 672 ~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~~~~l~~~l~~ll~lLaPf~PhiaE 751 (842)
T TIGR00396 672 KTYLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKKDALYLEYLKGFLTVLSPFAPHLAE 751 (842)
T ss_pred cccCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 00000011234578999999999999999999988 99999999999999988653 5678999999999999999999
Q ss_pred HHHHHcCCC-CCccccCCCCCCcccCCCCceEEeEEEeceeEeEEEccCCCCHHHHHHHHhcCHhHHhhhCCCCeeEEEE
Q 002411 828 ELWFRLGHS-NSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIY 906 (926)
Q Consensus 828 elw~~L~~~-~sv~~~~WP~~de~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~la~~~~~~~k~l~~k~i~kvi~ 906 (926)
|||+.|+.. .||+.++||+++++.+.+++++++||||||+|++++++.+.++++++++++++++++++|+||+|+|+|+
T Consensus 752 ElW~~l~~~~~sv~~~~wP~~d~~~l~~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~gk~i~k~i~ 831 (842)
T TIGR00396 752 ELWEKLGSEPFIIKQAKWPKVDETALVEDKVTIVLQVNGKFKAKKTVPKDADEEQVEELAKQDPEVKKYLENKTIKKVIY 831 (842)
T ss_pred HHHHHhCCCCCeeecCCCCCCCHHHHhhcceEEEEEEcCeEEEEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceEEEE
Confidence 999999865 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcEEEEEec
Q 002411 907 VPGRILNVILD 917 (926)
Q Consensus 907 v~~kivN~v~~ 917 (926)
|||||||||++
T Consensus 832 v~~klvNiv~~ 842 (842)
T TIGR00396 832 VPGKLVNFVIK 842 (842)
T ss_pred eCCCEEEEEeC
Confidence 99999999984
No 3
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-172 Score=1421.70 Aligned_cols=797 Identities=50% Similarity=0.856 Sum_probs=693.0
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChH
Q 002411 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP 147 (926)
Q Consensus 68 ~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glp 147 (926)
.||+.|+++|++...|.++ .+.+++| ||++|||||+|. |||||.|.||+.|+++||+||+||+|++|+|||.||||
T Consensus 34 ~iEk~W~~~~~~~~~~~~~--~d~sk~K-YiLsMFPYPSG~-LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP 109 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKD--SDKSKKK-YILSMFPYPSGA-LHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP 109 (876)
T ss_pred HHHHHHHHHHhcCCccccc--cccCCCc-eEEEecCCCCCc-ccccceEEEEehHHHHHHHHhcCceeecCCcccccCCc
Confidence 7999999999999888764 4677888 788999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcc
Q 002411 148 AEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTV 227 (926)
Q Consensus 148 ie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ 227 (926)
+|++|++.|++|+.|+..||+.|++||++||+++||+|+..||+|+|++|+||+|.+|+++||+|+.+.+|||||.++|+
T Consensus 110 AENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TV 189 (876)
T KOG0435|consen 110 AENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTV 189 (876)
T ss_pred hhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhh-ccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCC-CCcHHHHHHHHhhhccCCCceEEEEeecCCCCcc
Q 002411 228 LANEEV-VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQER 305 (926)
Q Consensus 228 ls~~ev-~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~ 305 (926)
||++|| .+|+|||+|++|+++.++|||+++|+|+++|+++|+.+ +||+ |++||+||||+|.|+.+.|++.++.+.
T Consensus 190 LAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~~-- 266 (876)
T KOG0435|consen 190 LANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGSN-- 266 (876)
T ss_pred ecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-HHHHHHhhcccccceEEEEEeccCCCC--
Confidence 999999 69999999999999999999999999999999999998 6999 999999999999999999999875542
Q ss_pred ceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCc
Q 002411 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEA 385 (926)
Q Consensus 306 ~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~ 385 (926)
++.|.||||||+||+|++++++.|+|+++.... .|.+... ++++. .| |.+.+.++.||++|++
T Consensus 267 de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~---------~lkefl~-~~~l~------~K-g~~lp~~A~Np~tg~~ 329 (876)
T KOG0435|consen 267 DEILTVYTTRPETLFGASFLVLAPSHSLLDKDS---------SLKEFLS-KSDLP------QK-GVQLPCQAKNPVTGRA 329 (876)
T ss_pred CceEEEEecCchhhccceEEEEcCCchhhhhhc---------hHHHhhh-hhhcc------cc-CcccceeeccCCCCce
Confidence 689999999999999999999999998865432 1222211 11221 23 7888999999999999
Q ss_pred ccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCC-CC
Q 002411 386 IPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING-LS 464 (926)
Q Consensus 386 ~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~g-l~ 464 (926)
+||+.++||...+|||+||++|+|+.+|+++|++-++..+.++.. .|++.|+...+. .+.| +.
T Consensus 330 iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~----------~f~~~~K~~~~~------~~tn~~~ 393 (876)
T KOG0435|consen 330 IPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEV----------IFTNFGKKNEQK------AFTNLDI 393 (876)
T ss_pred eeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEee----------eecchhhhhccc------cccchhH
Confidence 999999999999999999999999999999999977665554432 233333322222 2455 34
Q ss_pred HHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCc
Q 002411 465 CQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (926)
Q Consensus 465 ~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l 544 (926)
.++|..+++++++..|.|+..++|+|+||+||||||||||||++||++|| .+++++++|||.||++++|.+.| +||
T Consensus 394 ~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG-~vpVpes~LPV~LP~l~~~~~kG---~Pl 469 (876)
T KOG0435|consen 394 RQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCG-AVPVPESELPVTLPELNDFTPKG---PPL 469 (876)
T ss_pred HHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCC-cccCcHHHCCcccccccccCCCC---Ccc
Confidence 45689999999999999999999999999999999999999999999987 99999999999999999998877 799
Q ss_pred cccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhh
Q 002411 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWH 624 (926)
Q Consensus 545 ~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~ 624 (926)
+..+.|+++.||+||.+++|||||||||+||||||+||+||+|++++|++..+.+|||||+||||+|||++||+|+|||+
T Consensus 470 s~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~ 549 (876)
T KOG0435|consen 470 SKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIA 549 (876)
T ss_pred cchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhee----------------------eecC-CCCccccCcccccccccccCCCcceEEeecceeEeccCCcccccccc
Q 002411 625 KMQYMV----------------------CKDV-DGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARA 681 (926)
Q Consensus 625 ~~~~~~----------------------~~~~-~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G 681 (926)
+|++.+ |+.+ .|.|+..+++...+ . |-+-+|+.+++.+++.. .
T Consensus 550 kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~n-----d--------~~~~~vlk~~~e~~v~t-~ 615 (876)
T KOG0435|consen 550 KFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVN-----D--------HQNKFVLKNDKEVVVVT-Y 615 (876)
T ss_pred HHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhc-----C--------CcceeEecCCCcceeee-H
Confidence 995543 1111 34444433221111 1 11367888888877766 9
Q ss_pred ccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhcCCC--CCCCCCCCcccCC
Q 002411 682 HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSL--PDGTFKGGTVVND 759 (926)
Q Consensus 682 ~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~--~~~~~~~~~~~~~ 759 (926)
+||||||+|+|||.+++.+||+|++|+|+|+++|++++++|+++++.|+.|||.|+|+++..... .++...+.....+
T Consensus 616 eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td 695 (876)
T KOG0435|consen 616 EKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTD 695 (876)
T ss_pred HHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998743211 1233333222222
Q ss_pred --CCchHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhccc-------cchHHHHHHHHHHhhchhhHHHHHH
Q 002411 760 --EEPTLEQLCTLHKCIAKVTEEIEG-TRFNTGISAMMEFINAAYKWE-------KHPRKIIEPFILLLAPYAPHMSEEL 829 (926)
Q Consensus 760 --~~~d~~~l~~l~~~i~~v~~~~e~-~~f~~ai~~l~~f~~~~~~~~-------~~~~~~l~~l~~lLaP~~P~~aEel 829 (926)
..+++.+.+..|.++++|+++||. +.+|+||+.+|.|.|.+.+.. .....+|+.+++||+|++||+|+|+
T Consensus 696 ~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~~h~~~~~~al~~lv~mlaP~aPh~asE~ 775 (876)
T KOG0435|consen 696 GFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVLVHSPEFERALEALVIMLAPFAPHVASEL 775 (876)
T ss_pred ccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcChHHHHHHHHHHHHHhccCchhHHHH
Confidence 234556788899999999999986 779999999999999876533 3446799999999999999999999
Q ss_pred HHHcCCCCCc-cccCCCCCCcccCCCCceEEeEEEeceeEeEEEccCC-CCH--HHHHHHHhcCHhHHhhhCCCCeeEEE
Q 002411 830 WFRLGHSNSL-AYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEG-CSE--EEAFKLASLDEKLSKFLDGKSIKKRI 905 (926)
Q Consensus 830 w~~L~~~~sv-~~~~WP~~de~~l~~~~~~~~vqvngk~r~~i~v~~~-~s~--e~~~~la~~~~~~~k~l~~k~i~kvi 905 (926)
|+.|++..+. ....||+++.+++.+.+ .++|||||+.|+.|+++.+ +++ +++.+.+++.+.+.+||.||+|+|.+
T Consensus 776 Ws~l~~~~~~~~~~~WP~vd~~~~~~~~-~~~v~INGk~~g~i~v~~~~l~~~~d~~~e~a~~~e~~~ryL~gkkIkks~ 854 (876)
T KOG0435|consen 776 WSALANDLSWVSDVKWPEVDPDYLIEFE-VLPVQINGKVRGKIEVDRRILEEMMDDALEFALQTEDGRRYLKGKKIKKSF 854 (876)
T ss_pred HHHHhccccchhccCCccCChhhhcccc-eeeEEEcCEecceeecchHHHHHHHHHHHHHHhcCHHHHHHhcCchhhhhe
Confidence 9999976555 34469999999887766 8899999999999999876 344 78999999999999999999999999
Q ss_pred EeC-CcEEEEEecCCcccc
Q 002411 906 YVP-GRILNVILDRQNIKA 923 (926)
Q Consensus 906 ~v~-~kivN~v~~~~~~~~ 923 (926)
+|| +|||||+++|.+++.
T Consensus 855 ~~~r~kiin~i~dr~~~k~ 873 (876)
T KOG0435|consen 855 YVPRRKIINFILDRIQAKK 873 (876)
T ss_pred echhHHHHHHHHHhhhccc
Confidence 999 799999999887763
No 4
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-170 Score=1499.62 Aligned_cols=799 Identities=49% Similarity=0.854 Sum_probs=730.8
Q ss_pred cCCCchhhhHHHHHHHHhCCCCCCCCCCCCCC-CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSK-PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~-~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
..|++.+||+|||++|+++++|+... +.++ +|||+++|+|||||. |||||+|||++.||++||+||+||||+||||
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~--d~~~~~Kfyvl~mfPYpSG~-LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG 79 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADE--DSDKPEKFYVLVMFPYPSGA-LHVGHVRNYTIGDVIARYKRMQGYNVLHPMG 79 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCC--CCCCCCceEEEeCCCCCCCC-cccCccccccHHHHHHHHHHhcCCeecccCc
Confidence 56999999999999999999999864 3344 699999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccc
Q 002411 141 WDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNW 220 (926)
Q Consensus 141 ~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~w 220 (926)
||++|+|+|++|++.|.+|+.|+..+++.|++||++||+++||+|++.|+||+|++++||+|.+|+++||||+++.+|+|
T Consensus 80 wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~Vnw 159 (814)
T COG0495 80 WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNW 159 (814)
T ss_pred ccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEecccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC--CcHHHHHHHHhhhccCCCceEEEEee
Q 002411 221 CPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRVL 298 (926)
Q Consensus 221 c~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~--~p~~~~~~~~~~i~~s~~~~v~f~~~ 298 (926)
||.|+|+|+|+||.+|.|+|||.+|++++++||||++|+|+++|+++|+.++ ||+.|+.||+||||+|.|+.|.|.+.
T Consensus 160 cP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~ 239 (814)
T COG0495 160 CPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVD 239 (814)
T ss_pred CCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999999999997 99999999999999999999999983
Q ss_pred cCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEe
Q 002411 299 DSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (926)
Q Consensus 299 ~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (926)
+.+ ....+.|+||||+|++|++++++.|+|+++..++..++...+.+|+..+...+..++......+.|.++|.+++
T Consensus 240 ~~~---~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~ 316 (814)
T COG0495 240 GEE---EIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAI 316 (814)
T ss_pred Ccc---cceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceecccccc
Confidence 211 14679999999999999999999999999999888777788889999888877777666667889999999999
Q ss_pred cCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCccccc
Q 002411 379 NPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGL 458 (926)
Q Consensus 379 ~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~ 458 (926)
||++++.+|||.+|||.+.+|||+||+||||+++|+++|++|+||+..+|...++ ....+|.++|+|+||..
T Consensus 317 ~p~~~e~iPi~~a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~---~~~~~~~~~g~linS~~----- 388 (814)
T COG0495 317 NPVNGEKIPVWIANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGT---VGKKVYEGEGVLINSGG----- 388 (814)
T ss_pred CCCCCCcCCEEEeCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCC---cccceeccCceEecccc-----
Confidence 9999999999999999999999999999999999999999999999999987654 44567779999999964
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCC
Q 002411 459 DINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTG 538 (926)
Q Consensus 459 ~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g 538 (926)
++|+...+|...++.++.+.+.+..+++|++|||++|||||||+|||+++|+.| ..+++++++||+.+|....+.+.|
T Consensus 389 -~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~-~~~~~~~d~Lpv~lp~~~~~~gt~ 466 (814)
T COG0495 389 -LDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDC-GVVPVPEDWLPVKLPERVRGLGTG 466 (814)
T ss_pred -ccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccC-CcccCchHhcCcccccccccCCCC
Confidence 899999888888999999999999999999999999999999999999999775 478899999999999987765544
Q ss_pred CCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCC-hhhcchhhhhcCCCceeeecccchhhhhH
Q 002411 539 TGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNS-KELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (926)
Q Consensus 539 ~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~-~~~~~~~~~~~w~PvDl~v~G~D~~~~HL 617 (926)
+||....+|+.+.|+. +++.||+||||+|++|||||+||.+|.+. +..++++..+||||||+|+||+||+++||
T Consensus 467 ---~pL~~~~~W~~~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehavlHL 541 (814)
T COG0495 467 ---SPLPWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAVLHL 541 (814)
T ss_pred ---CCCCCCcceEEEecCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHHHHH
Confidence 7999999999999987 89999999999999999999999999998 67888888899999999999999999999
Q ss_pred HHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchh
Q 002411 618 LYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 697 (926)
Q Consensus 618 ly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~ei 697 (926)
||+||||++++.. |.+. ..-||+++++ +|||+.++ |+||||||||+|+|+++
T Consensus 542 ly~rF~Hkal~d~-----g~~p-------------~~epf~~L~~--qGmVl~~~--------g~KMSKSKgN~v~p~~~ 593 (814)
T COG0495 542 LYFRFFHKALFDE-----GLVP-------------KDEPFKKLIT--QGMVLGEE--------GEKMSKSKGNVVDPEEA 593 (814)
T ss_pred HHHHHHHHHhccc-----CcCC-------------Cccchhhhhc--cceEEecC--------CCccccccCCCCCHHHH
Confidence 9999999997765 2222 2358889987 89999854 89999999999999999
Q ss_pred hhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCch-HHHHHHHHHHHHH
Q 002411 698 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPT-LEQLCTLHKCIAK 776 (926)
Q Consensus 698 i~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~l~~l~~~i~~ 776 (926)
|++||||++|+|+|+++|++++.+|++++++++.|||+|+|+++....-.. ... ..... ......++++++.
T Consensus 594 i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~h~~~~~ 666 (814)
T COG0495 594 VEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKL-----VEE--LTKEQGKEDRWLLHRTIKK 666 (814)
T ss_pred HHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcc-----ccc--ccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999985432000 000 01111 3345668899999
Q ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHhcccc-------chHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCC
Q 002411 777 VTEEIEG-TRFNTGISAMMEFINAAYKWEK-------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKAN 848 (926)
Q Consensus 777 v~~~~e~-~~f~~ai~~l~~f~~~~~~~~~-------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~d 848 (926)
|++.++. +.||+|++++|+|+|.+.++.. ..+++++.+++||+||+||+|||||+.||++++|+.++||+++
T Consensus 667 v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~~~~~~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~~~v~~~~wP~~d 746 (814)
T COG0495 667 VTEDFEARQTFNTAIAALMELLNALRKYLRRTEGDRKVLREALETWVRLLAPFAPHIAEELWEELGNEGFVSNAPWPEPD 746 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCCceeeCCCCCCC
Confidence 9999998 9999999999999999987643 3457999999999999999999999999977799999999999
Q ss_pred cccCCCCceEEeEEEeceeEeEEEccCCCCHHHHHHHHhcCHhHHhhhCCCCeeEEEEeCCcEEEEEe
Q 002411 849 PDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVIL 916 (926)
Q Consensus 849 e~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~la~~~~~~~k~l~~k~i~kvi~v~~kivN~v~ 916 (926)
++.+.++++++.+|+|||.|+++.+.+++++++.+.++++.++++++|+|++++|+|+||||+||||+
T Consensus 747 e~~l~~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~~k~i~VP~k~vn~v~ 814 (814)
T COG0495 747 EEALVEDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIKKVIAVPGKPVNIVE 814 (814)
T ss_pred hhhccccceEEEEEEeeEEEEEEEEcCCCCHHHHHHHHhccHHHHHHHcCCCcceEEecCCcceEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 5
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.8e-170 Score=1545.52 Aligned_cols=798 Identities=56% Similarity=0.994 Sum_probs=715.2
Q ss_pred ccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
...||+.++|++||++|+++++|+... +. +++||+++|||||||. |||||+++++++|+++||+||+|++|+|++|
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~--~~-~~~~~i~~~pPy~nG~-lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G 77 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTE--DS-SKKYYVLDMFPYPSGG-LHMGHVRNYTIGDVIARYKRMQGYNVLHPMG 77 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCc--cC-CCCEEEEccCCCCCCC-cchhhhHHHHHHHHHHHHHHhcCCcccccCc
Confidence 357999999999999999999999753 22 3479999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccc
Q 002411 141 WDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNW 220 (926)
Q Consensus 141 ~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~w 220 (926)
|||||+|||++|++.|.+|.+++.++++.|+++|++||+++||+++|.|+||.|+++++|+|.+|+++|+||++.++|+|
T Consensus 78 ~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~w 157 (805)
T PRK00390 78 WDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNW 157 (805)
T ss_pred cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCC-CCcHHHHHHHHhhhccCCCceEEEEeec
Q 002411 221 CPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLD 299 (926)
Q Consensus 221 c~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~ 299 (926)
||.|+|+||++||++++|++||.++++++++||||+|++|+++|+++|+.+ .||++++.||++|||+|.|++|+|++.+
T Consensus 158 cp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~ 237 (805)
T PRK00390 158 CPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVED 237 (805)
T ss_pred cCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccC
Confidence 999999999999999999999999999999999999999999999999988 5999999999999999999999999842
Q ss_pred CCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEec
Q 002411 300 SDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARN 379 (926)
Q Consensus 300 ~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 379 (926)
. +.+++|||||||||+||+||||||+++|+..+... ...++.|+.......++++......+.|.|+|+++.|
T Consensus 238 ~-----~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~ 310 (805)
T PRK00390 238 S-----DEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ--NPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIH 310 (805)
T ss_pred C-----CCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc--hHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEEC
Confidence 1 36899999999999999999999999998776532 2345666665554444443222234456799999999
Q ss_pred CCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccc
Q 002411 380 PASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLD 459 (926)
Q Consensus 380 P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~ 459 (926)
|++++++||+.++||++++|||+||+|||||++||++|++||||++++|++.+........+|+++|.|++++ .
T Consensus 311 P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~------~ 384 (805)
T PRK00390 311 PLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLINSG------E 384 (805)
T ss_pred CCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEecc------c
Confidence 9999999999999999999999999999999999999999999999999875321123456788899998764 4
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCC
Q 002411 460 INGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (926)
Q Consensus 460 ~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~ 539 (926)
++|+.+.+|+++|++.|++.|.+++.++|+++|||||||||||+|||+|||++|| .+++++++||+.+|+ .+.+.|.
T Consensus 385 ~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g-~~~v~~~~l~~~l~~--~~~~~~~ 461 (805)
T PRK00390 385 LDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCG-IVPVPEEDLPVVLPE--DVVPDGT 461 (805)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCC-ceeCchHhhhhhhhh--hcccCCC
Confidence 8999999999999999999999999999999999999999999999999999887 556788899999885 3455565
Q ss_pred CCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHH
Q 002411 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLY 619 (926)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly 619 (926)
..|+..+.+|++..|+.||+.++||+|||||||||||||++|++|++++..++++..++|||+|+|+||+||+++||+|
T Consensus 462 -~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y 540 (805)
T PRK00390 462 -GSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLY 540 (805)
T ss_pred -CChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999998877788888789999999999999999999999
Q ss_pred hhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhh
Q 002411 620 ARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT 699 (926)
Q Consensus 620 ~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~ 699 (926)
+||||++++... . ..+..||++|++ |||| |||||+||+|+|.++|+
T Consensus 541 ~Rf~~~~l~~~~-----------------~-~~~~~Pfk~v~~--~G~v--------------KMSKS~GN~i~p~~~i~ 586 (805)
T PRK00390 541 ARFFTKVLRDLG-----------------L-VSSDEPFKKLLT--QGMV--------------KMSKSKGNVVDPDDIIE 586 (805)
T ss_pred HHHHHHHHHHhh-----------------c-ccCCcchhhhee--cCcE--------------EeCCCCCCCCCHHHHHH
Confidence 999997654321 0 246799999997 6876 99999999999999999
Q ss_pred hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHH
Q 002411 700 EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTE 779 (926)
Q Consensus 700 ~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~ 779 (926)
+||||++|||+|++++++++++|+++.+.++.++++|+|+++.........+. ......|+|++++++++++++++
T Consensus 587 ~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~----~~~~~~D~~il~~l~~~i~~v~~ 662 (805)
T PRK00390 587 KYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD----VAALSEDKELRRKLHKTIKKVTE 662 (805)
T ss_pred HcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC----cccChhhHHHHHHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999998754210001111 11224578999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccCCC
Q 002411 780 EIEGTRFNTGISAMMEFINAAYKWEK-----HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKD 854 (926)
Q Consensus 780 ~~e~~~f~~ai~~l~~f~~~~~~~~~-----~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l~~ 854 (926)
+|++|+|++|++.+|+|++.+++++. ..+++++.+++||+|||||+|||||+.|+.++||+.++||++++..+.+
T Consensus 663 ~~e~~~f~~ai~~l~~f~n~lsk~~~~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~~~sv~~~~wP~~~~~~~~~ 742 (805)
T PRK00390 663 DIERLRFNTAIAALMELVNALYKAEDEQDKAVLREALEILVRLLAPFAPHLAEELWEKLGHEGSIANAPWPTADEAALVE 742 (805)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeeEecCCCCCCHHHhhh
Confidence 99999999999999999999988642 3568999999999999999999999999988899999999999998888
Q ss_pred CceEEeEEEeceeEeEEEccCCCCHHHHHHHHhcCHhHHhhhCCCCeeEEEEeCCcEEEEEec
Q 002411 855 STIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSKFLDGKSIKKRIYVPGRILNVILD 917 (926)
Q Consensus 855 ~~~~~~vqvngk~r~~i~v~~~~s~e~~~~la~~~~~~~k~l~~k~i~kvi~v~~kivN~v~~ 917 (926)
+.+++.+|||||+|++++++.+++++++++++++++.++++|+||+|+|+|+|||||||||++
T Consensus 743 ~~~~~~iqingk~r~~i~v~~~~~~~~i~~~a~~~~~i~~~l~~k~i~k~I~vp~kiiNiv~~ 805 (805)
T PRK00390 743 DEVTIVVQVNGKVRGKIEVPADASKEEIEALALADEKVQKFLEGKTIKKVIVVPGKLVNIVVK 805 (805)
T ss_pred hccEEEEEEccceeEEEEeCCCCCHHHHHHHHhcCHHHHHHhCCCCccEEEEeCCCEEEEEeC
Confidence 889999999999999999999999999999999999999999999999999999999999984
No 6
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-136 Score=1212.30 Aligned_cols=677 Identities=28% Similarity=0.454 Sum_probs=545.1
Q ss_pred hhhhcccCCCchhhhHHHHHHHHhCCCCCCCC-CCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCc
Q 002411 56 KQQVVKRAYPFHEIEPKWQSYWENNRTFRTPD-EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYN 134 (926)
Q Consensus 56 ~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~ 134 (926)
|++.++.++|+.++|++++++|+++++|++.. +.++++++|+++|||||+||. +|+|||+|.+++||+.||++|+||+
T Consensus 10 p~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~-iHiGHalnKilKDiI~Ry~~m~G~~ 88 (933)
T COG0060 10 PKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGN-IHIGHALNKILKDIIVRYKTMQGYD 88 (933)
T ss_pred ccCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCC-cchhhhHHHhhhhhhhhhhcccCCc
Confidence 45678889999999999999999999999887 367889999999999999998 9999999999999999999999999
Q ss_pred ccccccccccChHHHHHHHH-hCC---------------CchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHH
Q 002411 135 VLHPMGWDAFGLPAEQYAIE-TGT---------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWT 198 (926)
Q Consensus 135 V~~~~G~D~~Glpie~~a~~-~g~---------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v 198 (926)
|.+++||||||||||.++++ .|. .|++++.++++.|+++|+|||++.||+++|.|||+.|++.+
T Consensus 89 v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~ 168 (933)
T COG0060 89 VPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESV 168 (933)
T ss_pred CCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHH
Confidence 99999999999999988876 342 25678888999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHH
Q 002411 199 QWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVK 278 (926)
Q Consensus 199 ~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~ 278 (926)
+|+|.+|+++||||++.+||+|||+|+|+||++||+++. .
T Consensus 169 ~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d-----~----------------------------------- 208 (933)
T COG0060 169 WWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD-----V----------------------------------- 208 (933)
T ss_pred HHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc-----c-----------------------------------
Confidence 999999999999999999999999999999999998642 0
Q ss_pred HHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccch
Q 002411 279 EMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSD 358 (926)
Q Consensus 279 ~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~ 358 (926)
+|+++||+|++.+. |.+.+.+++||||||||||+|.||||||+..|+.+.+..+.....+...+....+..
T Consensus 209 --------~dpSIyV~F~v~~~-~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~ 279 (933)
T COG0060 209 --------KDPSIYVKFPVKDE-GLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAG 279 (933)
T ss_pred --------CCceEEEEEEeccC-CCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcC
Confidence 47899999999764 234579999999999999999999999999998776655432222333332222222
Q ss_pred hh-HhHhhhhccccccceEEecCCCC----CcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcC-CceeeeecCCC
Q 002411 359 LE-RTELQKEKTGVFSGCYARNPASG----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFD-ISIHSVVMPDD 432 (926)
Q Consensus 359 ~~-~~~~~~~~~~~l~g~~~~~P~~~----~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~-Lpi~~vv~~~~ 432 (926)
.+ ...+...+|..|.|..+.||+.. ...||+.+|||+.+.|||+||+|||||++||.+|+++| ||+.++||++
T Consensus 280 ~~~~~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~- 358 (933)
T COG0060 280 VEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDN- 358 (933)
T ss_pred CcceEEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCC-
Confidence 22 23456678889999999999995 89999999999999999999999999999999999999 7999999876
Q ss_pred CCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCce----------------eE----------
Q 002411 433 ESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK----------------KV---------- 486 (926)
Q Consensus 433 ~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~----------------~~---------- 486 (926)
|.+++.. ..+.|+.+++|.+.|++.|++.|..-+ .+
T Consensus 359 G~yt~~~------------------~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi 420 (933)
T COG0060 359 GRYTEEA------------------PKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFV 420 (933)
T ss_pred ccccccc------------------hhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchhee
Confidence 3333322 136666677777777777777654211 11
Q ss_pred ----------------ee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCC
Q 002411 487 ----------------NY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTP 536 (926)
Q Consensus 487 ----------------~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~ 536 (926)
+| +.+||||||||+||+|||+|+|++||+++++ ..+|--. ....++.
T Consensus 421 ~v~~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~-~~El~e~--~~~~~~~ 497 (933)
T COG0060 421 SVDKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVI-TEELEEL--VGQLVEE 497 (933)
T ss_pred EHHHHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeecc-HHHHHHH--HHHHhhh
Confidence 11 4689999999999999999999999988875 2222100 0112233
Q ss_pred CCCCCCCccccccceecccCCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCc---eeeecccch
Q 002411 537 TGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPV---DVYVGGAEH 612 (926)
Q Consensus 537 ~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~Pv---Dl~v~G~D~ 612 (926)
.|...+.-.. .+-+...|+.||+.++|++|||||||||+ .+|.... |.+. .++|. |+|++|+||
T Consensus 498 ~g~~~w~~~~-idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~----------~~~~~~~aD~~lEGsDQ 565 (933)
T COG0060 498 KGIDDWHRPD-IDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN----------LKFPALFADFYLEGSDQ 565 (933)
T ss_pred cCchhhhccc-hHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc----------ccCccccCcEEEEeccc
Confidence 4443221111 11123456689999999999999999986 4444333 3322 23455 999999999
Q ss_pred hhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCcc
Q 002411 613 AVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVV 692 (926)
Q Consensus 613 ~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv 692 (926)
. |+|+ .|++ ++|.+..+.+||++|++ |||++|++ |+|||||+||+|
T Consensus 566 ~-------RGWF--------------~Ssl---~~s~a~~~~aPYk~vlt--HGfvlDe~--------GrKMSKSlGN~v 611 (933)
T COG0060 566 T-------RGWF--------------YSSL---LTSTALFGRAPYKNVLT--HGFVLDEK--------GRKMSKSLGNVV 611 (933)
T ss_pred c-------chhH--------------HHHH---HHHHHHcCCchHHHHhh--cccEECCC--------CCCccccCCCcC
Confidence 6 9884 5555 78899999999999998 89999997 999999999999
Q ss_pred CcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHH---HHHHHHHHHHHHhcCCCCCCCCCCCccc--CCCCchHHHH
Q 002411 693 NPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG---VHRFLGRMWRLIVGSSLPDGTFKGGTVV--NDEEPTLEQL 767 (926)
Q Consensus 693 ~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~---~~r~L~r~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l 767 (926)
+|.+++++||||+||||++++. +..++.++++.++. ++|.|+|+++|++++ +.+++....... .....|+|++
T Consensus 612 ~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~n-l~~fdp~~~~~~~~~~~~~Drwil 689 (933)
T COG0060 612 DPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGN-LDDFDPKKDAVLPEELRELDRWIL 689 (933)
T ss_pred CHHHHHHhhCchheeeeeeecC-chhccccCHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCccccccchhhcchhHHHHH
Confidence 9999999999999999999776 67777788777655 456666777788776 433332221111 2234699999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhcccc----------------------chHHHHHHHHHHhhchhhH
Q 002411 768 CTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK----------------------HPRKIIEPFILLLAPYAPH 824 (926)
Q Consensus 768 ~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~~----------------------~~~~~l~~l~~lLaP~~P~ 824 (926)
++++.++++++++|++|+|+++++.|++|+ .++++|+- .++++|..++++||||+||
T Consensus 690 ~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPf 769 (933)
T COG0060 690 SRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPF 769 (933)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 999999999999999999999999999999 77887651 1247899999999999999
Q ss_pred HHHHHHHHcCCC---CCccccCCCCCCcccC
Q 002411 825 MSEELWFRLGHS---NSLAYESFPKANPDYL 852 (926)
Q Consensus 825 ~aEelw~~L~~~---~sv~~~~WP~~de~~l 852 (926)
+|||||+.|..+ +|||++.||++++...
T Consensus 770 taEeiw~~l~~~~~~eSVhl~~~p~~~~~~~ 800 (933)
T COG0060 770 TAEEIWQNLPGERKEESVHLEDWPEVDEELI 800 (933)
T ss_pred hHHHHHHhCccCCCCceeEeccCCccccccc
Confidence 999999999654 8999999999877654
No 7
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-130 Score=1147.36 Aligned_cols=619 Identities=30% Similarity=0.529 Sum_probs=519.9
Q ss_pred ccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
++.|||.++|++|+++|++++.|++.. +.+.++|.|.-+||+++|. ||||||+++++.|+++||+||+||+|+|++|
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~--~~~~~~f~I~~PPPNVTG~-LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG 78 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDP--NEDKPPFSIDTPPPNVTGS-LHMGHALNYTLQDILARYKRMRGYNVLWPPG 78 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCC--CCCCCCcEEeCCCCCCCCc-ccchhhhhHHHHHHHHHHHHcCCCeeecCCC
Confidence 467999999999999999999999763 2221559999899999997 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHH----hCCC------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHH
Q 002411 141 WDAFGLPAEQYAIE----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (926)
Q Consensus 141 ~D~~Glpie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~ 204 (926)
|||+|+|++..+++ .|++ +.+|.+++...|++||++||+|+||+++++||||.+.+.|+.+|.+
T Consensus 79 ~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~ 158 (877)
T COG0525 79 TDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVR 158 (877)
T ss_pred CCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHH
Confidence 99999999887754 2554 2467888999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhh
Q 002411 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (926)
Q Consensus 205 L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (926)
||++|||||++++|||||.|+|+||+.||++. +..|.
T Consensus 159 Ly~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~--e~~g~----------------------------------------- 195 (877)
T COG0525 159 LYEKGLIYRGERLVNWCPKCRTAISDIEVEYK--EVEGK----------------------------------------- 195 (877)
T ss_pred HHHCCceeecCCcccCCCccccchhhhhhccc--eeeee-----------------------------------------
Confidence 99999999999999999999999999999852 11111
Q ss_pred hccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHh
Q 002411 285 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTEL 364 (926)
Q Consensus 285 i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 364 (926)
=.+|+|++.++ +.+|+|+|||||||+|++||+|||+|+ +|.+
T Consensus 196 -----L~~i~y~l~~~-----~~~i~VATTRPEtmlgdtAVaVhP~De---------------RYk~------------- 237 (877)
T COG0525 196 -----LYYIKYPLADG-----DGYLVVATTRPETLLGDTAVAVHPDDE---------------RYKH------------- 237 (877)
T ss_pred -----EEEEEEecCCC-----CceEEEEecCccccccceEEEECCCCh---------------hhHh-------------
Confidence 13799999643 359999999999999999999999994 5654
Q ss_pred hhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccc
Q 002411 365 QKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG 444 (926)
Q Consensus 365 ~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~ 444 (926)
|.|+.+++|++|+.+||+.++||++++|||+||++||||++||+++++|+||++++++++
T Consensus 238 -------LvGk~v~lPl~~r~IpIiaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~d------------- 297 (877)
T COG0525 238 -------LVGKEVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDED------------- 297 (877)
T ss_pred -------hcCCEEecCCCCCeeeeecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCC-------------
Confidence 489999999999999999999999999999999999999999999999999999999986
Q ss_pred CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee---------------------------------------
Q 002411 445 EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK--------------------------------------- 485 (926)
Q Consensus 445 ~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~--------------------------------------- 485 (926)
|.|.... +.+|.||+..+|+++|++.|++.|..-+.
T Consensus 298 -G~in~~~----~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~ 372 (877)
T COG0525 298 -GRINEEA----AGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEA 372 (877)
T ss_pred -CeeccCC----ccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHH
Confidence 4443221 13699999999999999999999874221
Q ss_pred -----Eee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccc
Q 002411 486 -----VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK 546 (926)
Q Consensus 486 -----~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~ 546 (926)
+++ +++|||||||||||||||+|||++||++++..+ .|....
T Consensus 373 ~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~--~~~~~~----------------- 433 (877)
T COG0525 373 VKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE--EPEDPA----------------- 433 (877)
T ss_pred HhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCc--cccchh-----------------
Confidence 111 478999999999999999999998888765433 221100
Q ss_pred cccceecccCCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhc
Q 002411 547 AVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHK 625 (926)
Q Consensus 547 ~~~w~~~~~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~ 625 (926)
....|+. ..+++++|||||||+|| |++...+||..+.. ..+ +||+|+.+.|.|++ +||..
T Consensus 434 ----~~~~~~~--~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~-----l~~-fyPt~llvtG~DII-------ffWva 494 (877)
T COG0525 434 ----AAEKCPK--EELEQDEDVLDTWFSSSLWPFSTLGWPEETPD-----LKK-FYPTDLLVTGHDII-------FFWVA 494 (877)
T ss_pred ----hhccCch--hcccCCcchhhhhhhcccccccccCCCCcchH-----HHh-cCCCccccccchhh-------HHHHH
Confidence 0112322 56789999999999998 99999999987433 223 57999999999997 88974
Q ss_pred hhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchh
Q 002411 626 MQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADS 705 (926)
Q Consensus 626 ~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~ 705 (926)
+|+ +++..+++..||+.|++ ||+|.|++ |+|||||+||||||.++|++|||||
T Consensus 495 --rmi---------------~~~~~~~~~~PFk~V~i--hGLVrDe~--------G~KMSKS~GNvIDP~d~I~~yGaDA 547 (877)
T COG0525 495 --RMI---------------MRGLHLTGEVPFKDVYI--HGLVRDEQ--------GRKMSKSKGNVIDPLDVIDKYGADA 547 (877)
T ss_pred --HHH---------------HHHHHhcCCCCccEEEE--eeeEEcCC--------CCCCcccCCCcCCHHHHHHHhChHH
Confidence 333 35567789999999999 79999997 9999999999999999999999999
Q ss_pred hhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHH---HHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHh
Q 002411 706 LRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR---LIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE 782 (926)
Q Consensus 706 lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e 782 (926)
|||++++.+..++|+.|+++.+++.+||++++|| |++.+. .+..+.+.........|+|+++++++++++|+++|+
T Consensus 548 lRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~-~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~ld 626 (877)
T COG0525 548 LRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNL-DDLGPDDLDLLALSLADRWILSRLNETVKEVTEALD 626 (877)
T ss_pred HHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcc-cccCcccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999999996 444432 111111111111235689999999999999999999
Q ss_pred cccHHHHHHHHHHHH-HHHhcccc-------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCcccc
Q 002411 783 GTRFNTGISAMMEFI-NAAYKWEK-------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYE 842 (926)
Q Consensus 783 ~~~f~~ai~~l~~f~-~~~~~~~~-------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~ 842 (926)
+|+|+.|.++|++|+ +.++.|+- .+..+|+.+++||+|||||+|||||+.+...+||+.+
T Consensus 627 ~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~~si~~~ 706 (877)
T COG0525 627 NYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGTESIHLA 706 (877)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCCCeEEec
Confidence 999999999999999 45555531 1246899999999999999999999999877899999
Q ss_pred CCCCCCcccCCC
Q 002411 843 SFPKANPDYLKD 854 (926)
Q Consensus 843 ~WP~~de~~l~~ 854 (926)
+||.+++...++
T Consensus 707 ~~P~~~~~~~d~ 718 (877)
T COG0525 707 SWPEVDEELIDE 718 (877)
T ss_pred cCCCcchhhccH
Confidence 999998665554
No 8
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.3e-129 Score=1212.52 Aligned_cols=668 Identities=25% Similarity=0.398 Sum_probs=543.0
Q ss_pred cccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc
Q 002411 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (926)
+++.|||.++|++||++|+++++|++..+.+.++++|++++||||+||. |||||+++++++|+++||+||+||+|++++
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~-lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~ 85 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGL-PHYGHLLTRTIKDVVPRYKTMKGYKVERRA 85 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCC-ccHhhhHhhHHHHHHHHHHHhCCCcccCcC
Confidence 5678999999999999999999999765445678999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCCC----------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 140 GWDAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 140 G~D~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
||||||+|||.+|++ .|++ |++++.++++.|++++++||+++||+++|.|+||.|+++++|+|
T Consensus 86 GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F 165 (975)
T PRK06039 86 GWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWAL 165 (975)
T ss_pred CcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHH
Confidence 999999999999987 4654 67899999999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHH
Q 002411 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (926)
.+|+++||||++.++|+|||.|+|+||++||++++++++
T Consensus 166 ~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~----------------------------------------- 204 (975)
T PRK06039 166 KQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVK----------------------------------------- 204 (975)
T ss_pred HHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccC-----------------------------------------
Confidence 999999999999999999999999999999987665543
Q ss_pred hhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccch----hHHHHHHHHHhccch
Q 002411 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS----QNIEEYKNLASRKSD 358 (926)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~----~~~~~y~~~~~~~~~ 358 (926)
+.+++|+|++.+. .+.+++||||||||||||+||||||+++|+.+...++.- ..++.+.. .+
T Consensus 205 -----~~~~~v~f~l~~~----~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~-----~~ 270 (975)
T PRK06039 205 -----DPSVYVKFKLKGE----ENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLK-----ED 270 (975)
T ss_pred -----CceEEEEEEecCC----CCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhh-----cc
Confidence 3456899998532 247999999999999999999999999998765433221 11222211 11
Q ss_pred hhHhHhhhhccccccceEEecCCCC-----CcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCC
Q 002411 359 LERTELQKEKTGVFSGCYARNPASG-----EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 433 (926)
Q Consensus 359 ~~~~~~~~~~~~~l~g~~~~~P~~~-----~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~ 433 (926)
+ ..+.+.+|..|.|+++.||++. +.+||+.++||++++|||+||+|||||++||++|++||||++++|+++
T Consensus 271 ~--~~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~-- 346 (975)
T PRK06039 271 Y--EVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDD-- 346 (975)
T ss_pred c--EEEeeecCccccCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCC--
Confidence 1 1234556778999999999973 479999999999999999999999999999999999999999999865
Q ss_pred CCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------------
Q 002411 434 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------------------- 485 (926)
Q Consensus 434 ~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~---------------------------- 485 (926)
|++.+.. .+|.|+.+++|+++|++.|++.|...+.
T Consensus 347 ------------G~~~~~~-----~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~ 409 (975)
T PRK06039 347 ------------GRFTEEV-----PDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIR 409 (975)
T ss_pred ------------ceEcCCC-----ccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEe
Confidence 5554332 3589999999999999999999875321
Q ss_pred --------------Eee---------------ecCCeeeccccccCCccCceEeCCCCcccccC-ccccCccCCcccccC
Q 002411 486 --------------VNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLH-EAELPLTLPELDDFT 535 (926)
Q Consensus 486 --------------~~~---------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~-~~~l~~~lp~~~~~~ 535 (926)
++| +++|||||||||||||||+|+|++||+..++. .++|. .
T Consensus 410 ~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~---------~ 480 (975)
T PRK06039 410 VTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELE---------E 480 (975)
T ss_pred cHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHH---------H
Confidence 122 57899999999999999999999888654432 22211 0
Q ss_pred CCCCCCCCccccccce---ecccCCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccc
Q 002411 536 PTGTGEPPLSKAVSWV---QTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAE 611 (926)
Q Consensus 536 ~~g~~~~~l~~~~~w~---~~~~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D 611 (926)
..|....+...+..|+ ...|+ ||..++|++|||||||||+ |||..+++|.++.+.| ++|||+|+|++|+|
T Consensus 481 ~~g~~~~~~~l~~~~~d~~~~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~~~~f-----~~~~Pad~~~~G~D 554 (975)
T PRK06039 481 LFGEDVEPIDLHRPYVDEVTLPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFENKEWF-----EKHFPADFIVEGID 554 (975)
T ss_pred HhCCCcchhhhcccccccccccCC-CCcceEeccccccceeecCCccHHHhCCcccChhhh-----hccCCceEEEechh
Confidence 1121112222233444 34566 4788999999999999997 7888899997644322 45789999999999
Q ss_pred hhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCc
Q 002411 612 HAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNV 691 (926)
Q Consensus 612 ~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNv 691 (926)
|+ |||++.+. +++.++.+..||++|++ ||+|++.+ |+|||||+||+
T Consensus 555 i~-------r~Wf~~l~-----------------~~~~~~~~~~pfk~v~~--hG~Vld~~--------G~KMSKSlGNv 600 (975)
T PRK06039 555 QT-------RGWFYTLL-----------------ALSTALFDRPPYKNVLV--HGHVLDED--------GQKMSKSLGNY 600 (975)
T ss_pred hH-------hhHHHHHH-----------------HHHHHhcCCCcccEEEE--eeeEECCC--------CCCcCCCCCCc
Confidence 97 99975422 23445567889999998 79999876 99999999999
Q ss_pred cCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchh-hHHHHHHHHHHHHHHhc---C-CCCCCCCCCCc--ccCCCCchH
Q 002411 692 VNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSG-IEGVHRFLGRMWRLIVG---S-SLPDGTFKGGT--VVNDEEPTL 764 (926)
Q Consensus 692 v~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~-i~~~~r~L~r~~~~~~~---~-~~~~~~~~~~~--~~~~~~~d~ 764 (926)
|+|.++|++||||+||||++++++.+++.+|+++. ++.+.++++++||++.. . .+.+....... .......|+
T Consensus 601 IdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~ 680 (975)
T PRK06039 601 VDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDR 680 (975)
T ss_pred CCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHH
Confidence 99999999999999999999988889999999999 77778899988875421 1 11110000000 011134588
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc---------------------chHHHHHHHHHHhhchhh
Q 002411 765 EQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------------------HPRKIIEPFILLLAPYAP 823 (926)
Q Consensus 765 ~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---------------------~~~~~l~~l~~lLaP~~P 823 (926)
|+++++++++++++++|++|+|+.|++.+++|++.+++|+. .++++|+.+++||+||||
T Consensus 681 wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~~~~a~~~L~~~L~~l~~lLaPf~P 760 (975)
T PRK06039 681 WILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKLAAYATLYTVLETLSRLAAPFTP 760 (975)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999987766531 123689999999999999
Q ss_pred HHHHHHHHHcC---CCCCccccCCCCCCcccCC
Q 002411 824 HMSEELWFRLG---HSNSLAYESFPKANPDYLK 853 (926)
Q Consensus 824 ~~aEelw~~L~---~~~sv~~~~WP~~de~~l~ 853 (926)
|+|||||+.|+ ..+|||.+.||++++..++
T Consensus 761 f~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d 793 (975)
T PRK06039 761 FIAEEIYQNLTREDAPESVHLADWPEVDESLID 793 (975)
T ss_pred HHHHHHHHhccccCCCCeeEecCCCCCccccCC
Confidence 99999999998 4579999999999876654
No 9
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-128 Score=1193.99 Aligned_cols=669 Identities=25% Similarity=0.370 Sum_probs=531.2
Q ss_pred hhhhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcc
Q 002411 56 KQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNV 135 (926)
Q Consensus 56 ~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V 135 (926)
|++.++.++|+.++|++||++|+++++|+...+.+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|
T Consensus 11 p~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~-lHiGHa~~~~~~Dii~Ry~rm~G~~v 89 (912)
T PRK05743 11 PKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGD-IHIGHALNKILKDIIVKSKTMSGFDA 89 (912)
T ss_pred CCCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHccCCcc
Confidence 45667778999999999999999999999764445678899999999999998 99999999999999999999999999
Q ss_pred cccccccccChHHHHHHHHh------CCCch-------HHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 136 LHPMGWDAFGLPAEQYAIET------GTHPK-------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 136 ~~~~G~D~~Glpie~~a~~~------g~~~~-------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
+|++||||||+|||.+|++. +.++. +++.++++.|+++|++||+++||+++|.|+||.|.++++|+|
T Consensus 90 ~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f 169 (912)
T PRK05743 90 PYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRAL 169 (912)
T ss_pred cCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHH
Confidence 99999999999999999874 44444 588899999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHH
Q 002411 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (926)
.+|+++|+||++.++|+|||.|+|+||++||+++.
T Consensus 170 ~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~--------------------------------------------- 204 (912)
T PRK05743 170 GKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD--------------------------------------------- 204 (912)
T ss_pred HHHHHCCCEEecceeEecCCCcCCCchhhHhhccc---------------------------------------------
Confidence 99999999999999999999999999999998531
Q ss_pred hhhccCCCceEEEEeecCCC--CccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhh
Q 002411 283 NWIGRSEGAEMDFRVLDSDG--QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 360 (926)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~--~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~ 360 (926)
++|.++||+|++.+..- ...+.+++||||||||||||+||||||+++|+.+.+..+.-...+++.+.......++
T Consensus 205 ---~~s~~~yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~ 281 (912)
T PRK05743 205 ---KTSPSIYVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWE 281 (912)
T ss_pred ---ccCceEEEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCc
Confidence 13566789999854210 0023689999999999999999999999999865543221111122322222111111
Q ss_pred H-hHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccc
Q 002411 361 R-TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSE 439 (926)
Q Consensus 361 ~-~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~ 439 (926)
. ..+.+.+|..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++
T Consensus 282 ~~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~-------- 353 (912)
T PRK05743 282 DYEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDD-------- 353 (912)
T ss_pred ceEEEEEechHhhcCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCC--------
Confidence 1 1123455667999999999999999999999999999999999999999999999999999999998764
Q ss_pred cccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCc----------------eeEee---------------
Q 002411 440 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK----------------KKVNY--------------- 488 (926)
Q Consensus 440 ~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~----------------~~~~~--------------- 488 (926)
|.+.++. ..|.|+.+.+|+++|++.|++.|... ..+.|
T Consensus 354 ------G~~~~~~-----~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~ 422 (912)
T PRK05743 354 ------GRYTEEA-----PLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGL 422 (912)
T ss_pred ------ceEecCC-----cccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHH
Confidence 5554432 25899999999999999999998752 12222
Q ss_pred ---------------------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCC
Q 002411 489 ---------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (926)
Q Consensus 489 ---------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~ 541 (926)
+++||||||||+||+|||+|||++||+++. +++ ++..++. .+...|.
T Consensus 423 k~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~-~~~-~~~~i~~--~~~~~g~-- 496 (912)
T PRK05743 423 REQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHP-TPE-LIEHVAK--LFEKEGI-- 496 (912)
T ss_pred HHHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEee-cHH-HHHHHHH--HHHhhCC--
Confidence 248999999999999999999998886653 322 2221111 1122232
Q ss_pred CCccccccceec----ccCCCCCCCcccCCCcCcccccc--chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhh
Q 002411 542 PPLSKAVSWVQT----TEHSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVL 615 (926)
Q Consensus 542 ~~l~~~~~w~~~----~~~~~g~~~~re~d~mD~WfdSs--w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~ 615 (926)
..|.+. .||.|+..++|++|||||||||+ |+++.. + ..++|+|+|+|++|+||+
T Consensus 497 ------~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~-~-----------~~~~~~P~Dl~~~G~Di~-- 556 (912)
T PRK05743 497 ------DAWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLE-Q-----------RPELGYPADLYLEGSDQH-- 556 (912)
T ss_pred ------ccccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhc-C-----------ccccCCCceEEEeccccc--
Confidence 345432 36668889999999999999995 554432 1 012568999999999997
Q ss_pred hHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcc
Q 002411 616 HLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPD 695 (926)
Q Consensus 616 HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~ 695 (926)
|||++.++ +.+.++.+..||++|++ |||+++.+ |+|||||+||||+|.
T Consensus 557 -----r~Wf~~~l-----------------~~~~~~~g~~P~k~vl~--HG~vld~~--------G~KMSKSlGNvIdP~ 604 (912)
T PRK05743 557 -----RGWFQSSL-----------------LTSVATRGKAPYKQVLT--HGFTVDGK--------GRKMSKSLGNVIDPQ 604 (912)
T ss_pred -----chHHHHHH-----------------HHHHHhcCCCccceeEE--eeeEECCC--------CCCCCCCCCCcCCHH
Confidence 88875432 23344567899999998 79999976 999999999999999
Q ss_pred hhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHH---HHHHHHHHHHHhcCCCCCCCCCCCccc--CCCCchHHHHHHH
Q 002411 696 DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV---HRFLGRMWRLIVGSSLPDGTFKGGTVV--NDEEPTLEQLCTL 770 (926)
Q Consensus 696 eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~---~r~L~r~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~l 770 (926)
++|++||||+||||+++ +++++|.+|+++.+.++ ++.|.|+++|++++.. +......... .....|+++++++
T Consensus 605 ~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~-~~~~~~~~~~~~~l~~~D~~il~~l 682 (912)
T PRK05743 605 DVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLN-DFDPAKDAVPYEELLELDRWALHRL 682 (912)
T ss_pred HHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCcc-CCCcccccCCchhCCHHHHHHHHHH
Confidence 99999999999999996 67789999999988765 5567777777766532 1111000011 1234588999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhccc--------------c--------chHHHHHHHHHHhhchhhHHHH
Q 002411 771 HKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE--------------K--------HPRKIIEPFILLLAPYAPHMSE 827 (926)
Q Consensus 771 ~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~--------------~--------~~~~~l~~l~~lLaP~~P~~aE 827 (926)
++++++++++|++|+|++|++++++|++ .+++++ . .++.+++.+++||+|||||+||
T Consensus 683 ~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aE 762 (912)
T PRK05743 683 AELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAE 762 (912)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999994 665432 0 1236889999999999999999
Q ss_pred HHHHHcC--CCCCccccCCCCCCcccC
Q 002411 828 ELWFRLG--HSNSLAYESFPKANPDYL 852 (926)
Q Consensus 828 elw~~L~--~~~sv~~~~WP~~de~~l 852 (926)
|||++|+ .++||+++.||++++...
T Consensus 763 elw~~l~~~~~~sv~~~~wP~~~~~~~ 789 (912)
T PRK05743 763 EIWQYLPGEREESVFLEEWPEVPELAD 789 (912)
T ss_pred HHHHhcccCCCCceEEecCCCCccccC
Confidence 9999994 567999999999877654
No 10
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-126 Score=1173.96 Aligned_cols=682 Identities=24% Similarity=0.351 Sum_probs=524.0
Q ss_pred hhhhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcc
Q 002411 56 KQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNV 135 (926)
Q Consensus 56 ~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V 135 (926)
|++.++.++|+.++|++||++|+++++|+...+.+.++++|++++||||+||. |||||++|++++|+++||+||+||+|
T Consensus 16 p~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~-lHiGHaln~~lkDii~Ry~rm~G~~v 94 (961)
T PRK13804 16 PQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGN-IHIGHALNKILKDVIVRSKQMLGFDA 94 (961)
T ss_pred CCCCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCC-ccHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 55667778999999999999999999999865445678999999999999998 99999999999999999999999999
Q ss_pred cccccccccChHHHHHHHHh----CCC------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHH
Q 002411 136 LHPMGWDAFGLPAEQYAIET----GTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQ 199 (926)
Q Consensus 136 ~~~~G~D~~Glpie~~a~~~----g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~ 199 (926)
+|++||||||+|||+++++. |.. |++++.++++.|+++|++||+++||+++|.|+||.|+++++
T Consensus 95 ~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~ 174 (961)
T PRK13804 95 NYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIA 174 (961)
T ss_pred cCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHH
Confidence 99999999999999988664 332 34578889999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHH
Q 002411 200 WIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKE 279 (926)
Q Consensus 200 ~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~ 279 (926)
|+|.+|+++|+||++.+||+|||.|+|+||++||++. +.
T Consensus 175 ~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~--~~--------------------------------------- 213 (961)
T PRK13804 175 REFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYH--DI--------------------------------------- 213 (961)
T ss_pred HHHHHHHHCCCEEeCCcceecCCCCCCCccchhcccc--cc---------------------------------------
Confidence 9999999999999999999999999999999999742 10
Q ss_pred HHHhhhccCCCceEEEEeecCCCC-ccceeEEEeecCCccccCCcEEEECCCCccchhcccc----------cchhHHHH
Q 002411 280 MQRNWIGRSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----------TQSQNIEE 348 (926)
Q Consensus 280 ~~~~~i~~s~~~~v~f~~~~~~~~-~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~----------~~~~~~~~ 348 (926)
+|.++||+|++.+..+. ..+.+++||||||||||||+||||||+++|+.+.... +.....++
T Consensus 214 -------~s~~~~v~F~~~~~~~~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~ 286 (961)
T PRK13804 214 -------ESDTIWVKFPVKDGKGILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADA 286 (961)
T ss_pred -------cCceEEEEEEecCcccccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHH
Confidence 36788999999542110 0236899999999999999999999999997765532 11111122
Q ss_pred HHHHHhccchhhH-hHhhhhccccccceEEecCCCCC-----cccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCC
Q 002411 349 YKNLASRKSDLER-TELQKEKTGVFSGCYARNPASGE-----AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422 (926)
Q Consensus 349 y~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~P~~~~-----~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~L 422 (926)
..+.......++. ..+.+.+|+.|.|+++.||++++ .+||+.++||++++|||+||+|||||++||+++++|||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l 366 (961)
T PRK13804 287 LAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGR 366 (961)
T ss_pred HHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccCCCCCCceEEeCCCCCHHHHHHHHHcCC
Confidence 2222111111111 12345678899999999999998 89999999999999999999999999999999999999
Q ss_pred -ceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------
Q 002411 423 -SIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------- 485 (926)
Q Consensus 423 -pi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~---------------- 485 (926)
|+.++|+++ |.+++..+.|.|.- ..++.|+.+.+|++.|++.|.+.|...+.
T Consensus 367 ~~~~~~vd~~-G~~~~~~~~~~g~~----------v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~p 435 (961)
T PRK13804 367 TEIPVTVDED-GFYTENAPGFGGAR----------VIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKP 435 (961)
T ss_pred CcccccCCCC-eEEccCCCcccccc----------ccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCe
Confidence 999999765 44433333333211 01377888889999999998887753210
Q ss_pred ---------------------------------Eee--------------ecCCeeeccccccCCccCceEeCCCCcccc
Q 002411 486 ---------------------------------VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVP 518 (926)
Q Consensus 486 ---------------------------------~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~ 518 (926)
+++ +++||||||||+||||||+|||+ +|+.++
T Consensus 436 ii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~-~~~~~~ 514 (961)
T PRK13804 436 VIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAE-DGEILM 514 (961)
T ss_pred EEEeccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcC-CCCEec
Confidence 111 35699999999999999999995 566553
Q ss_pred cCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcCcccccc--chhhhhcCCCCChhhcchhh
Q 002411 519 LHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTK 596 (926)
Q Consensus 519 ~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSs--w~~l~~~~p~~~~~~~~~~~ 596 (926)
.+ ++... ..+.+...|...+......+++... -.|+..++|++|||||||||+ |++.. .+ .
T Consensus 515 ~~--~~~~~--~~~~~~~~g~~~w~~~~~~~~~~~~-~~~~~~~~r~~DvlDvWFdSg~s~~~~~----~~--------~ 577 (961)
T PRK13804 515 DE--EVNAR--IADAFEEEGADAWFAEGAKERFLGG-FHPNGEFTKVTDILDVWFDSGSTHAFVL----ED--------R 577 (961)
T ss_pred cH--HHHHH--HHHHHHhcCCccccccCHHHhcCcc-cCcccceEecCcceeeeecCCCCccccc----cC--------C
Confidence 22 21111 1112222343221111112222111 025678999999999999995 43321 00 1
Q ss_pred hhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccc
Q 002411 597 ERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIR 676 (926)
Q Consensus 597 ~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~ 676 (926)
.++++|+|+|++|+||+ |||++.+ . +++.++.+..||++|++ |||+++.+
T Consensus 578 ~~~~~PaD~~~eG~Di~-------rgWF~s~--------------l---l~s~~~~~~~P~k~V~~--HG~vld~~---- 627 (961)
T PRK13804 578 PDLKWPADLYLEGSDQH-------RGWFNSS--------------L---LESCGTRGRAPYKAVLT--HGFTLDEK---- 627 (961)
T ss_pred cccCCCceEEEEEcccc-------cHHHHHH--------------H---HHHHHhcCCCChhhEEE--eccEECCC----
Confidence 12346999999999996 9997531 1 45666778899999998 79999966
Q ss_pred cccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHH---HHHHHHHHHHHhcCCCCCCCCCC
Q 002411 677 LIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGV---HRFLGRMWRLIVGSSLPDGTFKG 753 (926)
Q Consensus 677 ~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~---~r~L~r~~~~~~~~~~~~~~~~~ 753 (926)
|+|||||+||||+|.++|++||||+||||+++ ++++++.+|+++.+.++ ++.|.|++++++++. . .+.+
T Consensus 628 ----G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl-~--~~~~ 699 (961)
T PRK13804 628 ----GEKMSKSLGNTVSPQDVIKQSGADILRLWVAS-VDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNL-A--HFDP 699 (961)
T ss_pred ----CCCccCCCCCcCCHHHHHHhcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc-c--cCCc
Confidence 99999999999999999999999999999996 56788999999887664 445556666665543 1 2221
Q ss_pred Cc-c-c--CCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhccc-c---------------------c
Q 002411 754 GT-V-V--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWE-K---------------------H 806 (926)
Q Consensus 754 ~~-~-~--~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~-~---------------------~ 806 (926)
.. . . .....|+|+++++++++++++++|++|+|++|++++++|+ +++++++ + .
T Consensus 700 ~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~v 779 (961)
T PRK13804 700 GEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTV 779 (961)
T ss_pred ccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHH
Confidence 11 0 1 1233578999999999999999999999999999999999 4554432 0 1
Q ss_pred hHHHHHHHHHHhhchhhHHHHHHHHHcCC--CCCccccCCCCCCcccCC
Q 002411 807 PRKIIEPFILLLAPYAPHMSEELWFRLGH--SNSLAYESFPKANPDYLK 853 (926)
Q Consensus 807 ~~~~l~~l~~lLaP~~P~~aEelw~~L~~--~~sv~~~~WP~~de~~l~ 853 (926)
++.+|+.+++||+|||||+|||||++|+. .+||+++.||++++.+.+
T Consensus 780 L~~il~~l~~lLaPi~P~~aEeiw~~L~~~~~~sv~l~~wP~~~~~~~d 828 (961)
T PRK13804 780 FYEIFVRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWRD 828 (961)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhcccCCCCceEecCCCCCcchhCC
Confidence 24689999999999999999999999983 579999999998765543
No 11
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=3.9e-125 Score=1171.56 Aligned_cols=675 Identities=20% Similarity=0.325 Sum_probs=524.0
Q ss_pred cccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc
Q 002411 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (926)
++..||+.++|++|+++|+++++|++..+.+.++++|++++||||+||. |||||+++++++|+++||+||+||+|++++
T Consensus 68 ~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~-lHiGHal~~tikDii~Ry~rm~G~~V~~~~ 146 (1205)
T PTZ00427 68 VSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGL-PHYGHLLAGIIKDCVTRYFYQCGFSVERKF 146 (1205)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCC-cchhHHHHHHHHHHHHHHHHcCCCeeccCC
Confidence 5678999999999999999999999875444567889999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCC----------------CchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 140 GWDAFGLPAEQYAIE-TGT----------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 140 G~D~~Glpie~~a~~-~g~----------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
||||||+|||..+++ .|+ .|++++.++.+.|++++++||+|+||+++|.|+|+.|.+.++|+|
T Consensus 147 GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f 226 (1205)
T PTZ00427 147 GWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVF 226 (1205)
T ss_pred ccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHH
Confidence 999999999998865 332 146788889999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHH
Q 002411 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (926)
.+|+++||||++.++|+|||.|+|+||++||..++.++.
T Consensus 227 ~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~----------------------------------------- 265 (1205)
T PTZ00427 227 SELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTP----------------------------------------- 265 (1205)
T ss_pred HHHHHCCCEEecceeeccCCCCCCchhHHHhhccccccc-----------------------------------------
Confidence 999999999999999999999999999999953333322
Q ss_pred hhhccCCCceEEEEeecC------------------------------C---C---------CccceeEEEeecCCcccc
Q 002411 283 NWIGRSEGAEMDFRVLDS------------------------------D---G---------QERDIKITVYTTRPDTIF 320 (926)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~------------------------------~---~---------~~~~~~i~i~TTrP~Tl~ 320 (926)
+++++|+|++.+. + + ...+.+++||||||||||
T Consensus 266 -----dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLp 340 (1205)
T PTZ00427 266 -----DPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLP 340 (1205)
T ss_pred -----CceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhhh
Confidence 3444555554321 0 0 012468999999999999
Q ss_pred CCcEEEECCCCccchhcc--cccc----hhHHHHHHHHHhc-cchhhHhHhhhhccccccceEEecCC---------CCC
Q 002411 321 GATYLVVAPEHPLLSSLV--STTQ----SQNIEEYKNLASR-KSDLERTELQKEKTGVFSGCYARNPA---------SGE 384 (926)
Q Consensus 321 g~~~v~v~p~~~y~~~~~--~~~~----~~~~~~y~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~~P~---------~~~ 384 (926)
||+||||||+..|+.+.. ..+. ...++.+...... ..++ ..+.+.+|..|.|..|.+|+ .++
T Consensus 341 an~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~--~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~ 418 (1205)
T PTZ00427 341 SNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDL--KIVNRFKGKELKGLRYKPLFTNFYEKYNFKER 418 (1205)
T ss_pred hceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhccccccc--EEEEEeechhhCCCeeeCCccccccccccCCc
Confidence 999999999999987643 1111 1122222221110 0111 22345677789999999886 267
Q ss_pred cccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCC--c----eeeeecCCCCCCcccccccccCceEeccCCccccc
Q 002411 385 AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI--S----IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGL 458 (926)
Q Consensus 385 ~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~L--p----i~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~ 458 (926)
.+||+.++||++++|||+||+|||||++||++|++||| | ++++|+++ |.+.... .
T Consensus 419 ~~pVi~~d~V~~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~--------------G~~~~~~-----~ 479 (1205)
T PTZ00427 419 AYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDAN--------------GYFTNEV-----E 479 (1205)
T ss_pred eeEEEccCccCCCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCCC--------------ceecCCC-----c
Confidence 89999999999999999999999999999999999999 2 56677654 4443321 3
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCCcee------------------------------------------Eee--------
Q 002411 459 DINGLSCQEATSKVIEWAEKTGNGKKK------------------------------------------VNY-------- 488 (926)
Q Consensus 459 ~~~gl~~~~a~~~i~~~l~~~g~~~~~------------------------------------------~~~-------- 488 (926)
+|.|+.+++|++.|++.|++.|...+. ++|
T Consensus 480 ~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~ 559 (1205)
T PTZ00427 480 EVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEK 559 (1205)
T ss_pred ccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHh
Confidence 588999999999999999998874221 111
Q ss_pred -------ecCCeeeccccccCCccCceEeCCCCcccccCc-cccCccCCcccccCCCCCCCCCcccccccee---cccCC
Q 002411 489 -------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLTLPELDDFTPTGTGEPPLSKAVSWVQ---TTEHS 557 (926)
Q Consensus 489 -------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~-~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~---~~~~~ 557 (926)
+++|||||||||||||||+|+|++|+.++++.. ++|.. ++.. .|. ..+ +..|++ ..||.
T Consensus 560 r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~-~~~~-----~~~--~dl--h~~~iD~~~~~~~~ 629 (1205)
T PTZ00427 560 KFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEE-LSGV-----KNI--NDL--HRHFIDHIEIKNPK 629 (1205)
T ss_pred HHHHHHhcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHH-Hhcc-----ccc--hhh--cccccChhhccCCc
Confidence 368999999999999999999988776554421 11110 0000 010 000 122222 23443
Q ss_pred CC--CCCcccCCCcCcccccc-chhhhhcCCCCC-hhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeec
Q 002411 558 SG--KPARRETSTMPQWAGSC-WYYLRFMDPKNS-KELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKD 633 (926)
Q Consensus 558 ~g--~~~~re~d~mD~WfdSs-w~~l~~~~p~~~-~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~ 633 (926)
++ ..++|++|||||||||+ |+|+..++|.++ .+ ..++|||+|++++|.||+ |||+..+ +
T Consensus 630 g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~-----~f~~~fPaD~i~eG~Dq~-------rgWf~s~--l--- 692 (1205)
T PTZ00427 630 GKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKE-----DFHKIFPADFIAEGLDQT-------RGWFYTL--L--- 692 (1205)
T ss_pred cccccceeecCceEEEEEeCCCChHHHhCCCcccchh-----hHhccCCceEEEEecchh-------ccHHHHH--H---
Confidence 21 25999999999999996 889988998742 22 124578999999999997 9996431 1
Q ss_pred CCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhc
Q 002411 634 VDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 713 (926)
Q Consensus 634 ~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~ 713 (926)
++|.++++++||++|++ ||||++++ |+|||||+||||||.++|++||||+||||++++
T Consensus 693 ------------~~s~~l~~~~PfK~Vlv--HG~Vld~d--------G~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~ 750 (1205)
T PTZ00427 693 ------------VISTLLFDKAPFKNLIC--NGLVLASD--------GKKMSKRLKNYPDPLYILDKYGADSLRLYLINS 750 (1205)
T ss_pred ------------HHHHHhcCCCCcceeEE--ccEEEcCC--------CCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhc
Confidence 46677889999999998 89999987 999999999999999999999999999999987
Q ss_pred CCc-CCCCcCCchhhHH-HHHHHHHHHH---HHhcCCCC----C-CCC--CCCc-ccCCCCchHHHHHHHHHHHHHHHHH
Q 002411 714 GPF-RDSKTWNTSGIEG-VHRFLGRMWR---LIVGSSLP----D-GTF--KGGT-VVNDEEPTLEQLCTLHKCIAKVTEE 780 (926)
Q Consensus 714 ~~~-~~~~~~~~~~i~~-~~r~L~r~~~---~~~~~~~~----~-~~~--~~~~-~~~~~~~d~~~l~~l~~~i~~v~~~ 780 (926)
+.. .++..|+++.+.+ ..++++++|+ |+..+... + ..+ .+.. .......|+|+++++++++++|+++
T Consensus 751 ~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~ 830 (1205)
T PTZ00427 751 VAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTE 830 (1205)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 654 6888999999865 5678888886 44332110 0 011 0000 0112335899999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHHHhcccc---------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCC----
Q 002411 781 IEGTRFNTGISAMMEFINAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH---- 835 (926)
Q Consensus 781 ~e~~~f~~ai~~l~~f~~~~~~~~~---------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~---- 835 (926)
|++|+|++|+++|++|++.++.|+- .++++|+.+++||||||||+|||||++|+.
T Consensus 831 me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~ 910 (1205)
T PTZ00427 831 MKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKST 910 (1205)
T ss_pred HHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhcccc
Confidence 9999999999999999987776641 134789999999999999999999999952
Q ss_pred ----------------------CCCccccCCCCCCccc
Q 002411 836 ----------------------SNSLAYESFPKANPDY 851 (926)
Q Consensus 836 ----------------------~~sv~~~~WP~~de~~ 851 (926)
.+|||++.||++++..
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~ 948 (1205)
T PTZ00427 911 NEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKY 948 (1205)
T ss_pred ccccccccccccccccccccCCCCeeEeeCCCCCcchh
Confidence 2599999999988765
No 12
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=9e-125 Score=1167.52 Aligned_cols=685 Identities=25% Similarity=0.398 Sum_probs=529.6
Q ss_pred cccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc
Q 002411 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (926)
++..||+.++|++||++|+++++|+...+.+.++++|++++|||||||. |||||++|++++|+++||+||+||+|++++
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~-lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGS-IHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCC-ccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4567999999999999999999999764435578899999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHh-CCC------c----------hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 140 GWDAFGLPAEQYAIET-GTH------P----------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 140 G~D~~Glpie~~a~~~-g~~------~----------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
||||||+|||.+|++. |++ + ++++.++++.|+++|++||+++||+++|.|+||.|+++++|+|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999775 543 2 4788999999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHH
Q 002411 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (926)
.+|+++||||++.++|+|||.|+|+||++||+++.|++++
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~---------------------------------------- 200 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDV---------------------------------------- 200 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccc----------------------------------------
Confidence 9999999999999999999999999999999987555431
Q ss_pred hhhccCCCceEEEEeecCCCC--ccc-eeEEEeecCCccccCCcEEEECCCCccchhcccc--cchhHHHHHHHHHhccc
Q 002411 283 NWIGRSEGAEMDFRVLDSDGQ--ERD-IKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST--TQSQNIEEYKNLASRKS 357 (926)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~--~~~-~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~--~~~~~~~~y~~~~~~~~ 357 (926)
++.+++|+|++.+.+.. ... .+++|||||||||+||+||||||+++|+.+.... +.....+++.+......
T Consensus 201 ----~~~~~~v~f~~~~~~~~~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~~~~~~ 276 (861)
T TIGR00392 201 ----KDPSIYVKFPVKKDKKTYLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEKLYNKA 276 (861)
T ss_pred ----cCceEEEEEEecCCcccccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHHHHHhc
Confidence 46788999998532210 001 2899999999999999999999999998765432 11111122222211111
Q ss_pred hhhHhHhhhhccccccceEEecCCCCCcc------cEEec-CcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecC
Q 002411 358 DLERTELQKEKTGVFSGCYARNPASGEAI------PIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMP 430 (926)
Q Consensus 358 ~~~~~~~~~~~~~~l~g~~~~~P~~~~~~------pi~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~ 430 (926)
..+...+.+.+|..|.|+++.||++++.+ |++.+ +||++++|||+||+|||||++||+++++||||++++|++
T Consensus 277 ~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~ 356 (861)
T TIGR00392 277 GSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDE 356 (861)
T ss_pred CCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCC
Confidence 11111234456678999999999999988 97555 999999999999999999999999999999999888876
Q ss_pred CCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee-------------------------
Q 002411 431 DDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------- 485 (926)
Q Consensus 431 ~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~------------------------- 485 (926)
+ |.+.+..+.|.| .+ ..+.|+.+.+|+++|++.|.+.|...+.
T Consensus 357 ~-g~~~~~~~~~~g--~~---------~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QW 424 (861)
T TIGR00392 357 K-GVYTEGVNDFQG--RF---------VKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQW 424 (861)
T ss_pred C-ceECCcCccccc--cc---------cccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccc
Confidence 5 332222222222 11 1478999999999999999999863210
Q ss_pred -----------------Eee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCc-c-c
Q 002411 486 -----------------VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPE-L-D 532 (926)
Q Consensus 486 -----------------~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~-~-~ 532 (926)
+++ +++||||||||+||||||+|+|++||...++. ++. + .
T Consensus 425 Fi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~-------~~~~~~~ 497 (861)
T TIGR00392 425 FIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVG-------SIEELIE 497 (861)
T ss_pred cEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCch-------hHHHHHH
Confidence 111 37899999999999999999999888653221 110 0 0
Q ss_pred ccCCCCCCCCCccccc---cceecccCCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeec
Q 002411 533 DFTPTGTGEPPLSKAV---SWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVG 608 (926)
Q Consensus 533 ~~~~~g~~~~~l~~~~---~w~~~~~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~ 608 (926)
.+...|.+.++...+. +|+...|+.| ..++|++|||||||||+ ||+....+|.++. ..++|+|+|+|++
T Consensus 498 ~~~~~g~~~w~~~~~~~~~~~~~~~~~~~-~~~~r~~dvlDvWfdS~~~~~~~~~~~~~~~------~f~~~~P~d~~i~ 570 (861)
T TIGR00392 498 LIELKGIDAWFEDLHRDFLDKITLKSGDG-GEYRRVPDVLDVWFDSGSMPYASIHYPFENE------KFKEVFPADFILE 570 (861)
T ss_pred HHHHhCCccccccchhhhcCchhccCCCC-cceEEccccccchhhcCcchHHhcCCCCCcc------hhhccCCceEEEE
Confidence 0111233222333333 3444567766 68999999999999996 4444444664432 1257889999999
Q ss_pred ccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccC
Q 002411 609 GAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSR 688 (926)
Q Consensus 609 G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSk 688 (926)
|+||+ |||++.+.. .+....+..||+++++ ||||++.+ |+|||||+
T Consensus 571 G~Di~-------r~Wf~~~~~-----------------~~~~~~~~~P~k~v~~--hG~vl~~~--------G~KMSKSk 616 (861)
T TIGR00392 571 GSDQT-------RGWFYSSLA-----------------IGTALFGQAPYKNVIT--HGFTLDEK--------GRKMSKSL 616 (861)
T ss_pred ecchh-------ccHHHHHHH-----------------HHHHHcCCCChHhhEe--cceEECCC--------CCCcCCCC
Confidence 99997 888765321 2223346899999998 89999865 99999999
Q ss_pred CCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH-HHHHHHH---HHh--cCCCCCCCCCCC--cc--cC
Q 002411 689 GNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR-FLGRMWR---LIV--GSSLPDGTFKGG--TV--VN 758 (926)
Q Consensus 689 GNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r-~L~r~~~---~~~--~~~~~~~~~~~~--~~--~~ 758 (926)
||+|+|.++|++||||+||||+++. ++.++.+|+++.+.++.+ +.+.+|| ++. .. +. ++.+. .. ..
T Consensus 617 GNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~-l~--~~~~~~~~~~~~~ 692 (861)
T TIGR00392 617 GNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYAN-LD--KFDPLFNSVAVEK 692 (861)
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc--cCCcccccccccc
Confidence 9999999999999999999999988 889999999999988665 6666564 443 22 11 12110 00 01
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-Hhccc----------c-----------chHHHHHHHHH
Q 002411 759 DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA-AYKWE----------K-----------HPRKIIEPFIL 816 (926)
Q Consensus 759 ~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~-~~~~~----------~-----------~~~~~l~~l~~ 816 (926)
....|.++++++++++++++++|++|+|++|++.+++|++. +++++ . ..+.+++.+++
T Consensus 693 l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~~~~~~l~~~l~~l~~ 772 (861)
T TIGR00392 693 FPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAAQTTLYYALLTLVR 772 (861)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12347889999999999999999999999999999999865 43321 0 12467899999
Q ss_pred HhhchhhHHHHHHHHHcCC---CCCccccCCCCCCcccCC
Q 002411 817 LLAPYAPHMSEELWFRLGH---SNSLAYESFPKANPDYLK 853 (926)
Q Consensus 817 lLaP~~P~~aEelw~~L~~---~~sv~~~~WP~~de~~l~ 853 (926)
||+|||||+|||||+.|+. .+||+.++||.+++.+.+
T Consensus 773 lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d 812 (861)
T TIGR00392 773 LLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFID 812 (861)
T ss_pred HHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcC
Confidence 9999999999999999975 369999999998776543
No 13
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.4e-124 Score=1167.15 Aligned_cols=674 Identities=23% Similarity=0.351 Sum_probs=527.1
Q ss_pred cCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc
Q 002411 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (926)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (926)
+.|||.++|++|+++|+++++|++..+.+.++++|++++||||+||. |||||+++++++|+++||+||+||+|++++||
T Consensus 6 ~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~-~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGL-PHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCc-chhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 56999999999999999999999875555678899999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHH-hCCC----------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHH
Q 002411 142 DAFGLPAEQYAIE-TGTH----------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (926)
Q Consensus 142 D~~Glpie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~ 204 (926)
||||+|||.++++ .|++ |++++.++++.|++++++||+|+||+++|.|+|+.|.+.++|+|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 9999999999864 4643 4567889999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhh
Q 002411 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (926)
Q Consensus 205 L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (926)
|+++|+||++.++|+|||.|+|+||++|++.++...
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~-------------------------------------------- 200 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDV-------------------------------------------- 200 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhhhhcccC--------------------------------------------
Confidence 999999999999999999999999999996332221
Q ss_pred hccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccc--h----hHHHHHHHHHhc--c
Q 002411 285 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ--S----QNIEEYKNLASR--K 356 (926)
Q Consensus 285 i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~--~----~~~~~y~~~~~~--~ 356 (926)
.+++++|+|++.+.. .+.+++||||||||||||+||||||+..|+.+....++ . ..++.+...... +
T Consensus 201 --~~~si~v~F~l~~~~---~~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 275 (1159)
T PLN02882 201 --SDPAVMVSFPIVGDP---DNASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPTAKPKSKK 275 (1159)
T ss_pred --CCcEEEEEEEecCCC---CCcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHhhhhcccc
Confidence 256789999995421 23699999999999999999999999999876542111 1 111212111100 0
Q ss_pred c-----hh-hHhHhhhhccccccceEEecCC------CCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCC--
Q 002411 357 S-----DL-ERTELQKEKTGVFSGCYARNPA------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI-- 422 (926)
Q Consensus 357 ~-----~~-~~~~~~~~~~~~l~g~~~~~P~------~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~L-- 422 (926)
+ .. +...+.+.+|..|.|++|.+|+ .++.+||+.++||++++|||+||+|||||++||++|++|||
T Consensus 276 ~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~ 355 (1159)
T PLN02882 276 GSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIE 355 (1159)
T ss_pred cccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccCCCCCcceeEecCCCChhHHHHHHHcCCCc
Confidence 0 00 1123455678899999998776 24689999999999999999999999999999999999999
Q ss_pred ---ceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee--------------
Q 002411 423 ---SIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK-------------- 485 (926)
Q Consensus 423 ---pi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~-------------- 485 (926)
|++++||++ |.+.... ..|.|+.+++|++.|++.|++.|...+.
T Consensus 356 ~~~~~~~~vd~~--------------G~~~~~~-----~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~ 416 (1159)
T PLN02882 356 KGGNLPVPVDDD--------------GCFTEKV-----TDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFCWRSD 416 (1159)
T ss_pred cccCccceECCC--------------ceEccCC-----cccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEeeCCC
Confidence 799999875 4443321 2488999999999999999998874221
Q ss_pred ----------------------------Eee---------------ecCCeeeccccccCCccCceEeCCCCcccccCc-
Q 002411 486 ----------------------------VNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE- 521 (926)
Q Consensus 486 ----------------------------~~~---------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~- 521 (926)
++| +++|||||||||||||||+|+|++|+.++++..
T Consensus 417 tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~ 496 (1159)
T PLN02882 417 TPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSI 496 (1159)
T ss_pred CEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcH
Confidence 111 368999999999999999999977665554332
Q ss_pred cccCccCCcccccCCCCCCCCCccccccceecc-cC-CCC---CCCcccCCCcCcccccc-chhhhhcCCCCChhhcchh
Q 002411 522 AELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT-EH-SSG---KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKT 595 (926)
Q Consensus 522 ~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~-~~-~~g---~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~ 595 (926)
++|.. +. ...+. .+. ..|++.. +| .|| ..++|++|||||||||+ |+|+..++|.++.+.|.
T Consensus 497 ~el~~-~~-----~~~~~---dlh--~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~-- 563 (1159)
T PLN02882 497 AELEK-LS-----GVKVT---DLH--RHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFENKELFE-- 563 (1159)
T ss_pred HHHHH-Hh-----CCchh---hcc--ccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccChhHhh--
Confidence 22110 00 00011 111 1122211 22 234 36999999999999996 99999999976544332
Q ss_pred hhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCcc
Q 002411 596 KERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNI 675 (926)
Q Consensus 596 ~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~ 675 (926)
. ++|+|++++|+||+ |||+..+. ++|.++.+..||++|++ |||+++++
T Consensus 564 --~-~~PaD~i~eG~Dq~-------RgWf~~ll-----------------~~s~~l~~~~pfk~Viv--hG~vlde~--- 611 (1159)
T PLN02882 564 --K-NFPADFVAEGLDQT-------RGWFYTLM-----------------VLSTALFDKPAFKNLIC--NGLVLAED--- 611 (1159)
T ss_pred --c-cCCceEEEEecchh-------hhHHHHHH-----------------HHHHHhcCCCCcceeEE--ccEEECCC---
Confidence 2 36999999999997 99963211 45667789999999998 89999987
Q ss_pred ccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCc-CCCCcCCchhhHHHH-HHHHHHHH---HHhcCCCCC--
Q 002411 676 RLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEGVH-RFLGRMWR---LIVGSSLPD-- 748 (926)
Q Consensus 676 ~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~-~~~~~~~~~~i~~~~-r~L~r~~~---~~~~~~~~~-- 748 (926)
|+|||||+||+|+|.++|++||||+||||++++... .++..|+++++.+.. ++++++|| |++.+....
T Consensus 612 -----G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~ 686 (1159)
T PLN02882 612 -----GKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEV 686 (1159)
T ss_pred -----CCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999966543 677889999988764 47766665 454432110
Q ss_pred ---CCCCCCcc----cCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc----------------
Q 002411 749 ---GTFKGGTV----VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK---------------- 805 (926)
Q Consensus 749 ---~~~~~~~~----~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~---------------- 805 (926)
..+.+... ......|+|+++++++++++++++|++|+|++|++++++|++.+.+|+-
T Consensus 687 ~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~ 766 (1159)
T PLN02882 687 EGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTNIYVRFNRKRLKGRTGEEDC 766 (1159)
T ss_pred ccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHhCCHhhhCCCChHHH
Confidence 11111100 0113458999999999999999999999999999999999976544320
Q ss_pred -----chHHHHHHHHHHhhchhhHHHHHHHHHcCC-----CCCccccCCCCCCcccCCC
Q 002411 806 -----HPRKIIEPFILLLAPYAPHMSEELWFRLGH-----SNSLAYESFPKANPDYLKD 854 (926)
Q Consensus 806 -----~~~~~l~~l~~lLaP~~P~~aEelw~~L~~-----~~sv~~~~WP~~de~~l~~ 854 (926)
.+.++|+.+++||+|||||+||+||++|+. .+|||++.||++++..+++
T Consensus 767 ~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~ 825 (1159)
T PLN02882 767 RTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDE 825 (1159)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcch
Confidence 124789999999999999999999999974 5799999999988766543
No 14
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3.1e-123 Score=1163.07 Aligned_cols=652 Identities=25% Similarity=0.376 Sum_probs=517.7
Q ss_pred hhhcccCCCchhhhHHHHHHHHhCCCCCCCC--CCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCc
Q 002411 57 QQVVKRAYPFHEIEPKWQSYWENNRTFRTPD--EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYN 134 (926)
Q Consensus 57 ~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~ 134 (926)
+.++++.||+.++|++||++|+++++|+... ..+.++++|+|++||||+||. |||||+++++++|+++||+||+|++
T Consensus 21 ~~~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~-lHiGHa~~~~~~D~~~Ry~rm~G~~ 99 (995)
T PTZ00419 21 ISSMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGY-LHIGHALTGAIQDSLIRYHRMKGDE 99 (995)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3457789999999999999999999998742 124568899999999999998 9999999999999999999999999
Q ss_pred ccccccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHH
Q 002411 135 VLHPMGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKW 197 (926)
Q Consensus 135 V~~~~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~ 197 (926)
|+|++||||||+|++..+++ .|.+ |.+|+.++++.|++||++||+++||+++|+|+|+.|.++
T Consensus 100 v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~ 179 (995)
T PTZ00419 100 TLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKA 179 (995)
T ss_pred ccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHH
Confidence 99999999999999655432 3433 346789999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHH
Q 002411 198 TQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESV 277 (926)
Q Consensus 198 v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~ 277 (926)
++|+|.+|+++||||++.++|+|||.|+|+||++||++. ... ...+++++.|.+.+.
T Consensus 180 v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~--~~~---------~~~~~~~~~~~~~~~------------ 236 (995)
T PTZ00419 180 VKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFE--EIE---------KPTKITIPGYDKKVE------------ 236 (995)
T ss_pred HHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhcccc--ccc---------ccceeeccccccccc------------
Confidence 999999999999999999999999999999999999742 111 112355555543210
Q ss_pred HHHHHhhhccCCC--ceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhc
Q 002411 278 KEMQRNWIGRSEG--AEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASR 355 (926)
Q Consensus 278 ~~~~~~~i~~s~~--~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~ 355 (926)
.| .+|+|++.+.+ +.+|+|||||||||+|++||||||++++ |.
T Consensus 237 -----------~g~l~~i~f~l~~~~----~~~l~vaTTrPeTl~g~~avav~P~d~~---------------y~----- 281 (995)
T PTZ00419 237 -----------VGVLWHFAYPLEDSG----QEEIVVATTRIETMLGDVAVAVHPKDER---------------YK----- 281 (995)
T ss_pred -----------cceeEEEEEeecCCC----CcEEEEEeCCcchhhhCeEEEECCCCcH---------------HH-----
Confidence 12 36889884321 1389999999999999999999999853 32
Q ss_pred cchhhHhHhhhhccccccceEEecCC-CCCcccEEecC-cccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCC
Q 002411 356 KSDLERTELQKEKTGVFSGCYARNPA-SGEAIPIWVAD-YVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 433 (926)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~g~~~~~P~-~~~~~pi~~~~-~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~ 433 (926)
.|.|+++.||+ +++.+||+.++ ||++++|||+||+|||||++||+++++||||++++++++
T Consensus 282 ---------------~l~G~~~~~Pl~~~~~ipii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~-- 344 (995)
T PTZ00419 282 ---------------KLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLD-- 344 (995)
T ss_pred ---------------HhcCCEEECCccCCCEEEEEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCC--
Confidence 24799999999 89999999999 999999999999999999999999999999999999865
Q ss_pred CCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee-------------------------
Q 002411 434 SSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY------------------------- 488 (926)
Q Consensus 434 ~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~------------------------- 488 (926)
|.+.... ..|.|+.+.+|+++|++.|++.|.+.+...|
T Consensus 345 ------------G~~~~~~-----~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~ 407 (995)
T PTZ00419 345 ------------GKINENG-----GEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVN 407 (995)
T ss_pred ------------ceEcCCC-----cccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEe
Confidence 4443221 3589999999999999999999886432221
Q ss_pred ---------------------------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccC
Q 002411 489 ---------------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT 535 (926)
Q Consensus 489 ---------------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~ 535 (926)
+++|||||||||||||||+|||++||. .++++...+..+.
T Consensus 408 ~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~-~~~~~~~~~~~~~------ 480 (995)
T PTZ00419 408 CKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGP-ETDPSDEEPWVVA------ 480 (995)
T ss_pred cHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCc-cccCCCCceEEEc------
Confidence 578999999999999999999998873 2222211111000
Q ss_pred CCCCCCCCccccccceecccCCCCCCCcccCCCcCccccccch-hhhhcCCCCChhhcchhhhhcCCCceeeecccchhh
Q 002411 536 PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWY-YLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAV 614 (926)
Q Consensus 536 ~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~-~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~ 614 (926)
.....++.....+ ..|+.|+..++|++|||||||||+++ +...++|.+..+ .++|||+|+|++|+||+
T Consensus 481 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~------~~~~~P~d~~~~G~Dii- 549 (995)
T PTZ00419 481 --RSEEEALEKAKKK--FGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDD------LQRFFPTSLLETGSDIL- 549 (995)
T ss_pred --CCHHHHHhhhccc--cCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHH------HhhcCCCcEEEechhHH-
Confidence 0000111111111 12455777899999999999999855 555668865422 26788999999999986
Q ss_pred hhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCc
Q 002411 615 LHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNP 694 (926)
Q Consensus 615 ~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p 694 (926)
|||++.+. +++.++.+.+||++|++ ||+|++++ |+|||||+||||||
T Consensus 550 ------~~W~arm~-----------------~~~~~~~~~~Pfk~v~~--HG~v~d~~--------G~KMSKSlGNvIdP 596 (995)
T PTZ00419 550 ------FFWVARMV-----------------MMSLHLTDKLPFKTVFL--HAMVRDSQ--------GEKMSKSKGNVIDP 596 (995)
T ss_pred ------hHHHHHHH-----------------HHHHHhcCCCChHHHhc--cceEECCC--------CCCcccCCCCcCCh
Confidence 67764321 34556678999999998 89999986 99999999999999
Q ss_pred chhhh-------------------------------------hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHH
Q 002411 695 DDVVT-------------------------------------EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRM 737 (926)
Q Consensus 695 ~eii~-------------------------------------~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~ 737 (926)
.++|+ +||||+||||+++.++...|++|+.+.+.+..+|++++
T Consensus 597 ~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nkl 676 (995)
T PTZ00419 597 LEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKL 676 (995)
T ss_pred HHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHH
Confidence 99999 89999999999998888999999999999999999999
Q ss_pred HHHH---hcCCCCCCCCCCC-c------ccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhccc--
Q 002411 738 WRLI---VGSSLPDGTFKGG-T------VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWE-- 804 (926)
Q Consensus 738 ~~~~---~~~~~~~~~~~~~-~------~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~-- 804 (926)
||.+ +.+. ........ . .......|+|+++++++++++++++|++|+|+.|++++++|+ +.+++|+
T Consensus 677 wN~~rf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~~~n~Yie 755 (995)
T PTZ00419 677 WNAVKFALMKL-LKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYELCDVYLE 755 (995)
T ss_pred HHHHHHHHhcc-cccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9854 3322 11111000 0 001123488999999999999999999999999999999985 3332221
Q ss_pred ----------c---------chHHHHHHHHHHhhchhhHHHHHHHHHcCC----CCCccccCCCCCCcccCC
Q 002411 805 ----------K---------HPRKIIEPFILLLAPYAPHMSEELWFRLGH----SNSLAYESFPKANPDYLK 853 (926)
Q Consensus 805 ----------~---------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~----~~sv~~~~WP~~de~~l~ 853 (926)
. .++++|+.+++||+|||||+|||||+.|+. ++||+.++||.+++.+.+
T Consensus 756 ~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~si~~~~~P~~~~~~~d 827 (995)
T PTZ00419 756 LIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSESISIAKYPQPNPGWNN 827 (995)
T ss_pred HhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCeeeccCCCCCCcccCC
Confidence 0 134689999999999999999999999973 469999999998765443
No 15
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=2.4e-122 Score=1146.86 Aligned_cols=642 Identities=25% Similarity=0.409 Sum_probs=507.0
Q ss_pred hhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccc
Q 002411 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (926)
Q Consensus 58 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (926)
.++++.|||.++|++||++|+++++|++.. +.++++|+|++||||+||. |||||+++++++|+++||+||+||+|+|
T Consensus 94 ~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGHa~~~ti~Dii~Ry~rm~G~~vl~ 170 (1066)
T PLN02381 94 SQMAKQYSPSAVEKSWYAWWEKSGYFGADA--KSSKPPFVIVLPPPNVTGA-LHIGHALTAAIEDTIIRWKRMSGYNALW 170 (1066)
T ss_pred hhcccCCCHHHHHHHHHHHHHHCCCccCCc--cCCCCcEEEEeCCCCCCCC-ccHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 457899999999999999999999999753 4568899999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHH
Q 002411 138 PMGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (926)
Q Consensus 138 ~~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~ 200 (926)
++||||||+|++.++++ .|.+ |.+++.++++.|++||++||+++||+++|+|+|+.|+++++|
T Consensus 171 ~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 250 (1066)
T PLN02381 171 VPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTE 250 (1066)
T ss_pred cCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHH
Confidence 99999999999988754 2543 347789999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHH
Q 002411 201 IFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 280 (926)
Q Consensus 201 ~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~ 280 (926)
+|.+|+++||||++.++|+|||.|+|+||++||++. +..+..+. ++. .|+..+
T Consensus 251 ~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~--d~~~~s~~---------~~~-------------~~~~~~--- 303 (1066)
T PLN02381 251 AFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYI--DIKERTLL---------KVP-------------GYDKPV--- 303 (1066)
T ss_pred HHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhh--ccccchhh---------ccc-------------CCCcce---
Confidence 999999999999999999999999999999999742 22111110 110 122221
Q ss_pred HHhhhccCCC--ceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccch
Q 002411 281 QRNWIGRSEG--AEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSD 358 (926)
Q Consensus 281 ~~~~i~~s~~--~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~ 358 (926)
+.| ++++|++.+. +.+|+|||||||||+|+++++|||+++. |.
T Consensus 304 -------~~g~~~~~~Y~l~~~-----~~~i~vATtRpEti~g~~avaV~P~d~r---------------y~-------- 348 (1066)
T PLN02381 304 -------EFGVLTSFAYPLEGG-----LGEIVVATTRIETMLGDTAIAIHPDDER---------------YK-------- 348 (1066)
T ss_pred -------eeEEEEEEEEEecCC-----CCEEEEecCCHHHHhcccceeeCCCCcc---------------hh--------
Confidence 123 2467777521 2479999999999999999999999853 32
Q ss_pred hhHhHhhhhccccccceEEecCCCCCcccEEec-CcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcc
Q 002411 359 LERTELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ 437 (926)
Q Consensus 359 ~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~ 437 (926)
.|.|+++.||++++.+||+.+ +||++++|||+||+|||||++||++|++||||++++++++
T Consensus 349 ------------~L~G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~------ 410 (1066)
T PLN02381 349 ------------HLHGKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDD------ 410 (1066)
T ss_pred ------------hhCCCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCC------
Confidence 257999999999999999985 5999999999999999999999999999999999999875
Q ss_pred cccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCce---------------------------------
Q 002411 438 SEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK--------------------------------- 484 (926)
Q Consensus 438 ~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~--------------------------------- 484 (926)
|.+.... +..|.|+.+.+|+++|++.|++.|...+
T Consensus 411 --------G~~~~~~----~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l 478 (1066)
T PLN02381 411 --------GKINSNG----GSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSM 478 (1066)
T ss_pred --------ceeCCCC----ccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHH
Confidence 4332211 1248999999999999999999887531
Q ss_pred --------------eEee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCC
Q 002411 485 --------------KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTP 536 (926)
Q Consensus 485 --------------~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~ 536 (926)
+++| +++|||||||||||||||+|||+.++.. +. .
T Consensus 479 ~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~-------~~----------~ 541 (1066)
T PLN02381 479 AKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQ-------LK----------E 541 (1066)
T ss_pred HHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhh-------cc----------c
Confidence 1221 5899999999999999999999522110 00 0
Q ss_pred CCC--CCCCcc-ccccceecccCCC-CC--CCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecc
Q 002411 537 TGT--GEPPLS-KAVSWVQTTEHSS-GK--PARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGG 609 (926)
Q Consensus 537 ~g~--~~~~l~-~~~~w~~~~~~~~-g~--~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G 609 (926)
.|. +.+... ...+.+...|+.| |. .++|++|||||||||+ |++...++|.+... .++|||+|+|++|
T Consensus 542 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~------~~~~~P~d~~~~G 615 (1066)
T PLN02381 542 LGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDD------LKAFYPTSVLETG 615 (1066)
T ss_pred CCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHH------HhccCCCeeeeec
Confidence 010 000000 0011222223333 43 4899999999999998 45555678865322 2678999999999
Q ss_pred cchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCC
Q 002411 610 AEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRG 689 (926)
Q Consensus 610 ~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkG 689 (926)
.||+ |||++.+. ++|..+++..||++|++ ||+|+|++ |+|||||+|
T Consensus 616 ~Dii-------~~W~~rmi-----------------~~~~~~~~~~PFk~v~~--hG~V~D~~--------G~KMSKS~G 661 (1066)
T PLN02381 616 HDIL-------FFWVARMV-----------------MMGMQLGGDVPFRKVYL--HPMIRDAH--------GRKMSKSLG 661 (1066)
T ss_pred chhh-------hhHHHHHH-----------------HHHHHhCCCCchHHhee--cceEECCC--------CCCCCCCCC
Confidence 9996 55543211 34556678999999998 89999987 999999999
Q ss_pred CccCcchhhh-------------------------------------hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH
Q 002411 690 NVVNPDDVVT-------------------------------------EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 732 (926)
Q Consensus 690 Nvv~p~eii~-------------------------------------~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r 732 (926)
|||||.++|+ +||||+||||+++.++..++++|+.+.+.+.++
T Consensus 662 NvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~ 741 (1066)
T PLN02381 662 NVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQ 741 (1066)
T ss_pred CCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHH
Confidence 9999999999 899999999999999888899999999999999
Q ss_pred HHHHHHHHH---hcCCCCCCCCCCC-cc--cCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhccc-
Q 002411 733 FLGRMWRLI---VGSSLPDGTFKGG-TV--VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE- 804 (926)
Q Consensus 733 ~L~r~~~~~---~~~~~~~~~~~~~-~~--~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~- 804 (926)
|++++||.+ +.+. . ..+.+. .. ......|+|++++|++++++++++|++|+|+.|++++++|+. .++.|+
T Consensus 742 f~nKlwNa~rf~~~~~-~-~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yi 819 (1066)
T PLN02381 742 WCNKLWNAVRFAMSKL-G-DDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFI 819 (1066)
T ss_pred HHHHHHHHHHHHHhhc-c-cccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHH
Confidence 999999864 3221 1 111111 00 111245899999999999999999999999999999999863 332221
Q ss_pred ---------c-------------chHHHHHHHHHHhhchhhHHHHHHHHHcCC------CCCccccCCCCCCcccCC
Q 002411 805 ---------K-------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH------SNSLAYESFPKANPDYLK 853 (926)
Q Consensus 805 ---------~-------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~------~~sv~~~~WP~~de~~l~ 853 (926)
. .++.+|+.+++||+|||||+|||||+.|+. .+||+.++||++++..++
T Consensus 820 e~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~~SI~~~~~P~~~~~~~d 896 (1066)
T PLN02381 820 EAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRKDSIMISEYPSAVEAWTN 896 (1066)
T ss_pred HHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCCCeeEeCCCCCCCchhCC
Confidence 0 123589999999999999999999999962 369999999998876554
No 16
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-121 Score=1142.89 Aligned_cols=611 Identities=27% Similarity=0.475 Sum_probs=506.9
Q ss_pred hhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccc
Q 002411 58 QVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH 137 (926)
Q Consensus 58 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~ 137 (926)
.++++.|||.++|++||++|+++++|+... .+.++++|+|++||||+||. |||||++|++++|+++||+||+||+|+|
T Consensus 13 ~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~f~i~~pPP~~nG~-lHiGH~~~~~~~Di~~Ry~rm~G~~vl~ 90 (1052)
T PRK14900 13 TELAKGYEHREVEARWYPFWQERGYFHGDE-HDRTRPPFSIVLPPPNVTGS-LHLGHALTATLQDVLIRWKRMSGFNTLW 90 (1052)
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCCccCCc-ccCCCCCEEEecCCCCCCCc-chHHHHHhhHHHHHHHHHHHhcCCcccC
Confidence 467889999999999999999999998752 24567899999999999998 9999999999999999999999999999
Q ss_pred cccccccChHHHHHHHH-----hCCC------------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHH
Q 002411 138 PMGWDAFGLPAEQYAIE-----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQW 200 (926)
Q Consensus 138 ~~G~D~~Glpie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~ 200 (926)
++||||||+|+|..+++ .|.+ |.+|+.++++.|++||++||+++||+++|+|+||.|.++++|
T Consensus 91 ~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~ 170 (1052)
T PRK14900 91 LPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVRE 170 (1052)
T ss_pred CCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHH
Confidence 99999999999886654 1322 345788999999999999999999999999999999999999
Q ss_pred HHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHH
Q 002411 201 IFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEM 280 (926)
Q Consensus 201 ~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~ 280 (926)
+|.+|+++||||++.++|+|||.|+|+||++||++.. ..
T Consensus 171 ~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e-~~---------------------------------------- 209 (1052)
T PRK14900 171 VFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEE-AH---------------------------------------- 209 (1052)
T ss_pred HHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccC-CC----------------------------------------
Confidence 9999999999999999999999999999999997531 00
Q ss_pred HHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhh
Q 002411 281 QRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 360 (926)
Q Consensus 281 ~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~ 360 (926)
.+...+|+|++.+. +.+|+|||||||||+||+||||||++++ |.
T Consensus 210 ------~~~~~~i~f~l~~~-----~~~l~vaTTrPeTl~~~~avaV~P~~~~---------------y~---------- 253 (1052)
T PRK14900 210 ------QGELWSFAYPLADG-----SGEIVVATTRPETMLGDTAVAVHPLDPR---------------YM---------- 253 (1052)
T ss_pred ------CCeEEEEEEEecCC-----CcEEEEEECchhhhhcceeEEECCCcHH---------------HH----------
Confidence 01224789998531 3689999999999999999999999853 32
Q ss_pred HhHhhhhccccccceEEecCCCCCcccEEec-CcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccc
Q 002411 361 RTELQKEKTGVFSGCYARNPASGEAIPIWVA-DYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSE 439 (926)
Q Consensus 361 ~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~-~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~ 439 (926)
.|.|+++.||++++.+||+.+ .||++++|||+||+|||||++||++|++||||++++|+++
T Consensus 254 ----------~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~-------- 315 (1052)
T PRK14900 254 ----------ALHGKKVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPD-------- 315 (1052)
T ss_pred ----------HhcCCEEECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCC--------
Confidence 258999999999999999854 4899999999999999999999999999999999999875
Q ss_pred cccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------------------
Q 002411 440 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------------------------- 485 (926)
Q Consensus 440 ~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~---------------------------------- 485 (926)
|.+.+.. ..|.|+.+.+|++.|++.|.+.|.+.+.
T Consensus 316 ------G~~~~~~-----~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~ 384 (1052)
T PRK14900 316 ------GRMTAEA-----GPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLAR 384 (1052)
T ss_pred ------cEEecCC-----cccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHH
Confidence 5554432 3589999999999999999998876431
Q ss_pred ----------Ee---------e-----ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCC
Q 002411 486 ----------VN---------Y-----KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (926)
Q Consensus 486 ----------~~---------~-----~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~ 541 (926)
+. | +++|||||||||||+|||+|||++ |++++ ...
T Consensus 385 ~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~-~~~~v-~~~------------------- 443 (1052)
T PRK14900 385 PAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPD-GHVTV-ARE------------------- 443 (1052)
T ss_pred HHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCC-CcEEe-ccc-------------------
Confidence 11 1 588999999999999999999965 43322 110
Q ss_pred CCccccccceecccCCCCCC-CcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHH
Q 002411 542 PPLSKAVSWVQTTEHSSGKP-ARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLY 619 (926)
Q Consensus 542 ~~l~~~~~w~~~~~~~~g~~-~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly 619 (926)
....||.||.. ++|++|||||||||+ ||+..+++|.+... .++|||+|+|++|+|++
T Consensus 444 ---------~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~------~~~~~P~d~~~~G~Dii------ 502 (1052)
T PRK14900 444 ---------TPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDT------LRTFYPTSVMETGHDII------ 502 (1052)
T ss_pred ---------ccccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHH------HHhhCCchhhcccccHH------
Confidence 01357788765 899999999999998 99999999876322 25678999999999996
Q ss_pred hhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhh
Q 002411 620 ARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT 699 (926)
Q Consensus 620 ~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~ 699 (926)
|||+.++. +++..+.+.+||++|++ ||||++++ |+|||||+||+|+|.++|+
T Consensus 503 -~~W~a~~l-----------------~~~~~~~~~~Pfk~V~~--hG~v~d~~--------G~KMSKSkGNvIdP~dvIe 554 (1052)
T PRK14900 503 -FFWVARMM-----------------MMGLHFMGEVPFRTVYL--HPMVRDEK--------GQKMSKTKGNVIDPLVITE 554 (1052)
T ss_pred -hHHHHHHH-----------------HHHHHhcCCCccceeEe--cccEECCC--------CCCccCCCCCCCCHHHHHH
Confidence 56654321 23344567899999998 89999966 9999999999999999999
Q ss_pred hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHH---hcCCCCCCCCC-CCccc---CCCCchHHHHHHHHH
Q 002411 700 EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFK-GGTVV---NDEEPTLEQLCTLHK 772 (926)
Q Consensus 700 ~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~---~~~~~~~~~~~-~~~~~---~~~~~d~~~l~~l~~ 772 (926)
+||+|+||||+++.++.++|.+|+++.+.+..+|++++||.. ..+. ..+. .+... .....|.|++++++.
T Consensus 555 ~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~---~~~~~~~~~~~~~~~~~~D~wils~l~~ 631 (1052)
T PRK14900 555 QYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNL---SGYQERGEDPARLARTPADRWILARLQR 631 (1052)
T ss_pred HhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhh---hccCcccccccccccCHHHHHHHHHHHH
Confidence 999999999999988999999999999999889999998733 2111 1111 11111 113457899999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH-HHhccc----------c----------chHHHHHHHHHHhhchhhHHHHHHHH
Q 002411 773 CIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE----------K----------HPRKIIEPFILLLAPYAPHMSEELWF 831 (926)
Q Consensus 773 ~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~----------~----------~~~~~l~~l~~lLaP~~P~~aEelw~ 831 (926)
++++++++|++|+|+.|++.+|+|++ .+.+|+ . .+.++|+.+++||+|||||+|||||+
T Consensus 632 ~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~ 711 (1052)
T PRK14900 632 AVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWH 711 (1052)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99999999999999999999999984 333321 0 13478999999999999999999999
Q ss_pred HcCC-------CCCccccCCCCCCc
Q 002411 832 RLGH-------SNSLAYESFPKANP 849 (926)
Q Consensus 832 ~L~~-------~~sv~~~~WP~~de 849 (926)
.|+. .+||+.++||++++
T Consensus 712 ~L~~~~~~~~~~~SV~~~~wP~~~~ 736 (1052)
T PRK14900 712 VLRAQVGASAWADSVLAAEYPRKGE 736 (1052)
T ss_pred HhccccccCCCCCceeecCCCCCCc
Confidence 9963 26999999999875
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.5e-122 Score=1133.26 Aligned_cols=641 Identities=29% Similarity=0.473 Sum_probs=523.2
Q ss_pred hcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccc
Q 002411 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (926)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (926)
+++..||+.++|++||++|+++++|+... +.++++|+|++||||+||. |||||+++++++|+++||+||+||+|+++
T Consensus 5 ~~~~~~~~~~~E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGH~~~~~~~D~~~R~~r~~G~~v~~~ 81 (800)
T PRK13208 5 ELPKKYDPEELEEKWQKIWEEEGTYKFDP--DERKPVYSIDTPPPTVSGS-LHIGHVFSYTHTDFIARYQRMRGYNVFFP 81 (800)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCccccc--ccCCCcEEEecCcCCCCCC-ccHHHHHhHHHHHHHHHHHHcCCCcccCC
Confidence 46678999999999999999999999763 2357899999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH-hCCCch------------HHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHH
Q 002411 139 MGWDAFGLPAEQYAIE-TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQL 205 (926)
Q Consensus 139 ~G~D~~Glpie~~a~~-~g~~~~------------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L 205 (926)
+||||||+|||.+|++ .|++++ ++++++++.|+++|++||+++||+++++|+||.|+++++|+|.+|
T Consensus 82 ~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L 161 (800)
T PRK13208 82 QGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDL 161 (800)
T ss_pred CCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999987 487765 589999999999999999999999999999999999999999999
Q ss_pred hhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhh
Q 002411 206 LKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWI 285 (926)
Q Consensus 206 ~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i 285 (926)
+++|+||++.++|+|||.|+|+||++||++. ++.
T Consensus 162 ~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~--~~~-------------------------------------------- 195 (800)
T PRK13208 162 YKKGLIYRAEAPVLWCPRCETAIAQAEVEYR--ERE-------------------------------------------- 195 (800)
T ss_pred HHCCCeeecCcccccCCCCCCccchhhhccc--ccc--------------------------------------------
Confidence 9999999999999999999999999999742 211
Q ss_pred ccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhh
Q 002411 286 GRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 365 (926)
Q Consensus 286 ~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 365 (926)
+..++|+|++.+ +.+++|||||||||+|++||||||+++. |.
T Consensus 196 --~~~~~ikf~~~~------~~~l~v~TtrPeTl~g~~ai~v~p~~~~---------------~~--------------- 237 (800)
T PRK13208 196 --GKLNYIKFPVED------GEEIEIATTRPELLPACVAVVVHPDDER---------------YK--------------- 237 (800)
T ss_pred --ceEEEEEEEecC------CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH---------------
Confidence 234689999852 2589999999999999999999999853 32
Q ss_pred hhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccC
Q 002411 366 KEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGE 445 (926)
Q Consensus 366 ~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~ 445 (926)
.|.|+++.||++++++||++++||++++|||+||+||+||++||+++++||||++++++.+
T Consensus 238 -----~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~-------------- 298 (800)
T PRK13208 238 -----HLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDED-------------- 298 (800)
T ss_pred -----HhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCC--------------
Confidence 2579999999999999999999999999999999999999999999999999999999754
Q ss_pred ceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------Eee---------------
Q 002411 446 GLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------------VNY--------------- 488 (926)
Q Consensus 446 g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~----------------------~~~--------------- 488 (926)
|.+.... ..|+|+.+.+|+++|++.|++.|.+.+. .+|
T Consensus 299 G~~~~~~-----g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~ 373 (800)
T PRK13208 299 GRMTEAA-----GKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG 373 (800)
T ss_pred ceEecCC-----cccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh
Confidence 5554221 3589999999999999999998875321 011
Q ss_pred -------------------ecC-CeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccc
Q 002411 489 -------------------KLR-DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAV 548 (926)
Q Consensus 489 -------------------~l~-DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~ 548 (926)
+++ ||||||||+||+|||+|+|++||.+++..++.+|+. |. ....
T Consensus 374 ~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~-~~--------------~d~~ 438 (800)
T PRK13208 374 KEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD-PT--------------KDEP 438 (800)
T ss_pred cCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccC-ch--------------hhcc
Confidence 134 999999999999999999999886653223333321 10 0001
Q ss_pred cceecccCCCC-CCCcccCCCcCccccccchh-hhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhch
Q 002411 549 SWVQTTEHSSG-KPARRETSTMPQWAGSCWYY-LRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKM 626 (926)
Q Consensus 549 ~w~~~~~~~~g-~~~~re~d~mD~WfdSsw~~-l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~ 626 (926)
. ...|+.|| ..++|++|||||||||+|.+ ....+|.+.. ..++|||+|+|++|+||+.+|+.+..+
T Consensus 439 ~--~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~------~~~~~~P~d~~~~G~Di~~~w~~~~l~---- 506 (800)
T PRK13208 439 P--GYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDED------LFEKVFPMDLRPQGHDIIRTWLFYTIL---- 506 (800)
T ss_pred c--cccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChh------hhhhcCCceEEEeecchhhhHHHHHHH----
Confidence 1 24678888 46999999999999998543 4445565321 236788999999999998555443332
Q ss_pred hheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhh
Q 002411 627 QYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSL 706 (926)
Q Consensus 627 ~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~l 706 (926)
++.++.+..||+++++ ||++++.+ |+|||||+||+|+|.+++++||+|++
T Consensus 507 --------------------~~~~~~~~~Pf~~v~~--hg~v~~~~--------G~KMSKS~GN~i~p~~~i~~yg~D~l 556 (800)
T PRK13208 507 --------------------RAYLLTGKLPWKNIMI--SGMVLDPD--------GKKMSKSKGNVVTPEELLEKYGADAV 556 (800)
T ss_pred --------------------HHHHhcCCCCcceEEE--eeEEECCC--------CCCCCCCCCCCCCHHHHHHHcCccHH
Confidence 2334466789999988 79999865 99999999999999999999999999
Q ss_pred hHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhcCC-CCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhccc
Q 002411 707 RLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSS-LPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTR 785 (926)
Q Consensus 707 Rl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~ 785 (926)
|||++ .++++++.+|+++.+.++.++++++||++.... ..... ...........|+++++++++++++++++|++|+
T Consensus 557 R~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~ 634 (800)
T PRK13208 557 RYWAA-SARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADP-EPDKAEVLEPLDRWILAKLAKVVEKATEALENYD 634 (800)
T ss_pred HHHHh-cCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccc-ccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999 888899999999999999999999998752211 11100 0000011233578899999999999999999999
Q ss_pred HHHHHHHHHHHHHH-Hhccc----------c-----------chHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccC
Q 002411 786 FNTGISAMMEFINA-AYKWE----------K-----------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYES 843 (926)
Q Consensus 786 f~~ai~~l~~f~~~-~~~~~----------~-----------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~ 843 (926)
|++|++.+++|++. +.+|+ . .+.++|+.+++||+|||||+|||||++|+ ++||+.+.
T Consensus 635 f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~~si~~~~ 713 (800)
T PRK13208 635 FAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-GGSVHRAS 713 (800)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-CCceEecc
Confidence 99999999999864 33221 0 13478999999999999999999999998 67999999
Q ss_pred CCCCCcccCCC---CceEEeEEEeceeEeE
Q 002411 844 FPKANPDYLKD---STIVLPIQINGKTRGT 870 (926)
Q Consensus 844 WP~~de~~l~~---~~~~~~vqvngk~r~~ 870 (926)
||++++..++. +.+++..++++++|..
T Consensus 714 wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~ 743 (800)
T PRK13208 714 WPEPDEELIDEEDEELGELAKEILSAVRKY 743 (800)
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99998766543 3344455666655443
No 18
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.1e-121 Score=1131.51 Aligned_cols=623 Identities=26% Similarity=0.419 Sum_probs=499.5
Q ss_pred ccccHHHHhhhhhhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHH
Q 002411 46 SVNEIEEQKQKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILA 125 (926)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~ 125 (926)
.++|+..--+ .++++.|||.+ |++||++|+++++|+... +.++++|+|+++|||+||. |||||+++++++|+++
T Consensus 45 ~~~~~~~~~~--~~~~~~y~~~~-E~~~~~~W~~~~~f~~~~--~~~~~~f~i~~pPP~~tG~-lHiGHa~~~~~~D~~~ 118 (958)
T PLN02943 45 AASENDVFTS--PETAKSFDFTS-EERIYNWWESQGYFKPNF--DRGGDPFVIPMPPPNVTGS-LHMGHAMFVTLEDIMV 118 (958)
T ss_pred hcCccchhcc--cccCCCCChhh-hHHHHHHHHHCCCcccCc--ccCCCCEEEecCCCCCCCc-hhHHHHHHHHHHHHHH
Confidence 3444443322 36889999999 999999999999999763 3467889999999999998 9999999999999999
Q ss_pred HHHHHcCCcccccccccccChHHHHHHHH----hCCC------------chHHHHHHHHHHHHHHHHcCccccccCcccc
Q 002411 126 RLKRMQGYNVLHPMGWDAFGLPAEQYAIE----TGTH------------PKITTLRNINRFRTQLKSLGFSYDWNREIST 189 (926)
Q Consensus 126 Ry~r~~G~~V~~~~G~D~~Glpie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T 189 (926)
||+||+||+|+|++||||||+|+|..+++ .|++ |.+++.++++.|++||++||+++||+++|+|
T Consensus 119 Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T 198 (958)
T PLN02943 119 RYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFT 198 (958)
T ss_pred HHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCccc
Confidence 99999999999999999999999886654 3544 3456788999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccC
Q 002411 190 IEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD 269 (926)
Q Consensus 190 ~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~ 269 (926)
+||.|.++++|+|.+|+++||||++.++|+|||.|+|+||++||++. +.
T Consensus 199 ~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~--e~----------------------------- 247 (958)
T PLN02943 199 LDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYS--EE----------------------------- 247 (958)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcc--cc-----------------------------
Confidence 99999999999999999999999999999999999999999999742 11
Q ss_pred CCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHH
Q 002411 270 DLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEY 349 (926)
Q Consensus 270 ~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y 349 (926)
.+..++|+|++.+.+ +.+++|||||||||+|++||||||+++ +|
T Consensus 248 -----------------~~~~~~i~f~l~~~~----~~~l~vaTTrPeTl~~~~avavnP~d~---------------ry 291 (958)
T PLN02943 248 -----------------PGTLYYIKYRVAGGS----EDFLTIATTRPETLFGDVAIAVNPEDD---------------RY 291 (958)
T ss_pred -----------------cccEEEEEEEEcCCC----CCEEEEEeCChhhhhcceEEEECCCCH---------------HH
Confidence 134568999995421 258999999999999999999999996 23
Q ss_pred HHHHhccchhhHhHhhhhccccccceEEecCCC-CCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeee
Q 002411 350 KNLASRKSDLERTELQKEKTGVFSGCYARNPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVV 428 (926)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~-~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv 428 (926)
.+ |.|++++||++ |+.+||+.++||++++|||+||++||||++||+++++||||+++++
T Consensus 292 ~~--------------------l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i 351 (958)
T PLN02943 292 SK--------------------YIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVM 351 (958)
T ss_pred HH--------------------HcCCEEECCCcCCCeeeEEecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeee
Confidence 22 36899999997 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee-----------------------
Q 002411 429 MPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------------- 485 (926)
Q Consensus 429 ~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~----------------------- 485 (926)
+++ |.+++ ..|+.+.+|+++|++.|++.|...+.
T Consensus 352 d~~-G~~~~----------------------~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~ 408 (958)
T PLN02943 352 NKD-GTLNE----------------------VAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSK 408 (958)
T ss_pred CCC-ceeec----------------------cCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEecc
Confidence 775 32222 12333556666666666655542110
Q ss_pred ---------------------Ee--------------eecCCeeeccccccCCccCceEe--CCCCcccccCccccCccC
Q 002411 486 ---------------------VN--------------YKLRDWLFARQRYWGEPIPVVFL--DGTGETVPLHEAELPLTL 528 (926)
Q Consensus 486 ---------------------~~--------------~~l~DW~ISRQR~WG~PIPv~~~--~~~~~~~~~~~~~l~~~l 528 (926)
++ -+++||||||||+||||||+||| ++||+...+..+
T Consensus 409 QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~------ 482 (958)
T PLN02943 409 QWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARS------ 482 (958)
T ss_pred ceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCc------
Confidence 11 15799999999999999999998 355532111111
Q ss_pred CcccccCCCCCCCCCccccccceecccCCCCCC--CcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCcee
Q 002411 529 PELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKP--ARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDV 605 (926)
Q Consensus 529 p~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~--~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl 605 (926)
..+++...|+.||.. ++|++|||||||||+ |||..+++|.... ...++|||+|+
T Consensus 483 ------------------~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~-----~~~~~~yP~dl 539 (958)
T PLN02943 483 ------------------AEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSA-----EDFKKFYPTTV 539 (958)
T ss_pred ------------------HHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccCh-----HHHhccCCCeE
Confidence 011222335567765 789999999999998 9999998886422 12257789999
Q ss_pred eecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCcccccccccccc
Q 002411 606 YVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMS 685 (926)
Q Consensus 606 ~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMS 685 (926)
+++|+||+ |||+..+. +++..+.+..||++|++ ||++++.+ |+|||
T Consensus 540 ~~~G~Dii-------~fW~a~m~-----------------~~~~~~~~~~Pf~~v~~--hg~v~~~~--------G~KMS 585 (958)
T PLN02943 540 LETGHDIL-------FFWVARMV-----------------MMGIEFTGTVPFSYVYL--HGLIRDSQ--------GRKMS 585 (958)
T ss_pred EEEeehHH-------HHHHHHHH-----------------HhhhhhcCCCChheEEE--eccEECCC--------CCccc
Confidence 99999997 88875422 23445568899999998 79999866 99999
Q ss_pred ccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHH---HHhcCCCCCC-----------CC
Q 002411 686 KSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWR---LIVGSSLPDG-----------TF 751 (926)
Q Consensus 686 KSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~---~~~~~~~~~~-----------~~ 751 (926)
||+||+|+|.++|++||||++|||+++.+ ++++.+|+++.+.++.++++++|| |+..+..... .+
T Consensus 586 KS~GN~i~p~~~i~~ygaDalR~~l~~~~-~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~ 664 (958)
T PLN02943 586 KTLGNVIDPLDTIKEFGTDALRFTLALGT-AGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKF 664 (958)
T ss_pred CcCCCCCCHHHHHHhcCChHHHHHHHhCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 99999999999999999999999999765 488999999999999999999998 5544321100 01
Q ss_pred CCCcc-cCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhcccc---------------------chH
Q 002411 752 KGGTV-VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWEK---------------------HPR 808 (926)
Q Consensus 752 ~~~~~-~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~~---------------------~~~ 808 (926)
..... ......|+|+++++++++++++++|++|+|+.|++++++|+ +.+.+|+- .+.
T Consensus 665 ~~~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~ 744 (958)
T PLN02943 665 DKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLL 744 (958)
T ss_pred CccccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHH
Confidence 10000 01234588999999999999999999999999999999996 45444320 123
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHcCC-CCCccccCCCCCC
Q 002411 809 KIIEPFILLLAPYAPHMSEELWFRLGH-SNSLAYESFPKAN 848 (926)
Q Consensus 809 ~~l~~l~~lLaP~~P~~aEelw~~L~~-~~sv~~~~WP~~d 848 (926)
.+++.+++||+|||||+|||||++|+. ++||+.++||+++
T Consensus 745 ~vl~~ll~LL~PfmPfitEELwq~L~~~~~si~~~~wP~~~ 785 (958)
T PLN02943 745 YVFENILKLLHPFMPFVTEELWQALPYRKEALIVSPWPQTS 785 (958)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHcCCCCCceeecCCCCCc
Confidence 679999999999999999999999974 4599999999975
No 19
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=3.5e-121 Score=1131.85 Aligned_cols=670 Identities=23% Similarity=0.368 Sum_probs=508.4
Q ss_pred CCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 002411 64 YPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (926)
Q Consensus 64 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~ 143 (926)
-++.++|++||++|+++++|++..+.+ .+++|++++||||+||. |||||++|++++|+++||+||+||+|+|++||||
T Consensus 3 ~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~-lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 3 ANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGD-LHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCC-cchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 578899999999999999999864322 35679999999999998 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHh-C------CC-------chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCC
Q 002411 144 FGLPAEQYAIET-G------TH-------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRG 209 (926)
Q Consensus 144 ~Glpie~~a~~~-g------~~-------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~G 209 (926)
||+|||.++.+. + .. +++++.++++.|+++|++||++.||+++|.|+||.|.+.++++|.+|+++|
T Consensus 81 hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 81 HGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred CCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 999999987542 2 22 456688889999999999999999999999999999999999999999999
Q ss_pred cEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCC
Q 002411 210 LAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSE 289 (926)
Q Consensus 210 liy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~ 289 (926)
+||++.+||+|||+|+|+||++||+++. +. .++
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e----~~-------------------------------------------~~~ 193 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPE----GH-------------------------------------------VSK 193 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccC----Cc-------------------------------------------cCc
Confidence 9999999999999999999999998531 00 256
Q ss_pred CceEEEEeecCCC-----Cc---cceeEEEeecCCccccCCcEEEECCCCccchhccccc--------------------
Q 002411 290 GAEMDFRVLDSDG-----QE---RDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-------------------- 341 (926)
Q Consensus 290 ~~~v~f~~~~~~~-----~~---~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~-------------------- 341 (926)
++||+|++.+... .. .+.+++||||||||||||+||||||+..|+.+....+
T Consensus 194 s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~ 273 (974)
T PLN02843 194 SIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLK 273 (974)
T ss_pred eEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEeccccccccccccccccccccccc
Confidence 7899999864211 00 1259999999999999999999999999987655310
Q ss_pred ---c-h-hHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEe-cCcccCCCCCCceeecCCCChhhHH
Q 002411 342 ---Q-S-QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWV-ADYVLGSYGTGAIMAVPAHDTRDHE 415 (926)
Q Consensus 342 ---~-~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~-~~~V~~~~GTG~V~~~Pah~~~D~~ 415 (926)
. . ...+.+..........+...+...+|..|.|+++.||++++.+||+. ++||++++|||+||+|||||++||+
T Consensus 274 ~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~ 353 (974)
T PLN02843 274 EQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYI 353 (974)
T ss_pred cccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCCCceeEEecCCccCCCCCCCeEEeCCCCCHHHHH
Confidence 0 0 00011111110000111122344567789999999999999999975 8999999999999999999999999
Q ss_pred HHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHH-HHHHHHHHHHHHcCCCcee---------
Q 002411 416 FALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQ-EATSKVIEWAEKTGNGKKK--------- 485 (926)
Q Consensus 416 ~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~-~a~~~i~~~l~~~g~~~~~--------- 485 (926)
++++||||++++|+++ |.+.... ..|.|+.+. +|++.|++.|++.|...+.
T Consensus 354 ~~~~~~l~~~~~vd~~--------------G~~~~~~-----~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~ 414 (974)
T PLN02843 354 TGLKYGLPLLSPVDDA--------------GKFTEEA-----GQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPY 414 (974)
T ss_pred HHHHcCCCcccccCCC--------------ceEccCC-----cccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCc
Confidence 9999999999999875 3333221 247788776 7888888888888763221
Q ss_pred ---------------------------------Eee--------------ecCCeeeccccccCCccCceEeCCCCcccc
Q 002411 486 ---------------------------------VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVP 518 (926)
Q Consensus 486 ---------------------------------~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~ 518 (926)
+++ +++||||||||+||||||+|+|++||+++.
T Consensus 415 cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~~~~~~~ 494 (974)
T PLN02843 415 DWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVETKEPLM 494 (974)
T ss_pred cCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcCCCCEee
Confidence 111 468999999999999999999998886653
Q ss_pred cCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhh
Q 002411 519 LHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKER 598 (926)
Q Consensus 519 ~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~ 598 (926)
..+ .+. ...+.+...|.+.+.-....+++...+..++..++|++|||||||||+..+..... . ..+
T Consensus 495 ~~~-~i~---~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~---------~-~~~ 560 (974)
T PLN02843 495 NEE-TIA---HVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLG---------S-REG 560 (974)
T ss_pred chh-hHH---HHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhc---------c-ccc
Confidence 221 110 00111222343322111122333222222356799999999999999732221110 0 113
Q ss_pred cCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccc
Q 002411 599 YWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLI 678 (926)
Q Consensus 599 ~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~ 678 (926)
+++|+|+|++|+||+ |||++.+. +++.++.+..||++|++ |||+++++
T Consensus 561 ~~~PaDl~~eG~Di~-------rgWf~s~l-----------------~~~~~~~g~~Pfk~v~~--HG~vld~~------ 608 (974)
T PLN02843 561 LSYPADLYLEGSDQH-------RGWFQSSL-----------------LTSVATKGKAPYKSVLT--HGFVLDEK------ 608 (974)
T ss_pred cCCCceeeeeecccc-------chHHHHHH-----------------HHHHHhcCCCccceEEE--eccEECCC------
Confidence 457999999999997 88875432 34455678899999999 79999976
Q ss_pred cccccccccCCCccCcchhhh---------hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHH---HHHhcCCC
Q 002411 679 ARAHKMSKSRGNVVNPDDVVT---------EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMW---RLIVGSSL 746 (926)
Q Consensus 679 ~~G~KMSKSkGNvv~p~eii~---------~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~---~~~~~~~~ 746 (926)
|+|||||+||||+|.++|+ +||||+||||+++ ..+..+++|+.+.+.++.++++++| ++++++..
T Consensus 609 --G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~ 685 (974)
T PLN02843 609 --GFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLH 685 (974)
T ss_pred --CCCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999 8999999999995 4567788899988886666655555 55555532
Q ss_pred CCCCCCCCccc--CCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhccc----------c--------
Q 002411 747 PDGTFKGGTVV--NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE----------K-------- 805 (926)
Q Consensus 747 ~~~~~~~~~~~--~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~----------~-------- 805 (926)
+... ..... .....|+|+++++++++++++++|++|+|++|++++++|+. .+.+++ .
T Consensus 686 -~~~~-~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~ 763 (974)
T PLN02843 686 -DWKP-DNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRR 763 (974)
T ss_pred -CCCc-ccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHH
Confidence 1111 11111 11235889999999999999999999999999999999863 233211 1
Q ss_pred ----chHHHHHHHHHHhhchhhHHHHHHHHHcCC------CCCccccCCCCCCcccC
Q 002411 806 ----HPRKIIEPFILLLAPYAPHMSEELWFRLGH------SNSLAYESFPKANPDYL 852 (926)
Q Consensus 806 ----~~~~~l~~l~~lLaP~~P~~aEelw~~L~~------~~sv~~~~WP~~de~~l 852 (926)
.++.+++.+++||+|||||+|||||++|+. .+||+++.||++++.+.
T Consensus 764 ~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~~ 820 (974)
T PLN02843 764 SCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEWL 820 (974)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhhc
Confidence 134688999999999999999999999974 36999999999876654
No 20
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.2e-120 Score=1125.52 Aligned_cols=615 Identities=30% Similarity=0.509 Sum_probs=508.7
Q ss_pred ccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
++.|||.++|++||++|+++++|++.. +.++++|+|++||||+||. |||||+++++++|+++||+||+|++|++++|
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G 78 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDG--NSNKPPFCIDIPPPNVTGS-LHIGHALNWSIQDIIARYKRMKGYNVLWLPG 78 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCc--ccCCCeEEEEeCCCCCCCC-CcHHHhHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 577999999999999999999999863 3467889999999999998 9999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHh----CCCc------------hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHH
Q 002411 141 WDAFGLPAEQYAIET----GTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (926)
Q Consensus 141 ~D~~Glpie~~a~~~----g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~ 204 (926)
|||||+|||..+++. |.++ ++++.++.+.+++||++||+++||+++|+|+|+.|.++|+|+|.+
T Consensus 79 ~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~ 158 (861)
T TIGR00422 79 TDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVR 158 (861)
T ss_pred cCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHH
Confidence 999999999887652 4443 467899999999999999999999999999999999999999999
Q ss_pred HhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhh
Q 002411 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (926)
Q Consensus 205 L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (926)
|+++|+||++.++|+|||.|+|+||++||++. .+
T Consensus 159 L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~--~~-------------------------------------------- 192 (861)
T TIGR00422 159 LYEKGLIYRGEYLVNWDPKLNTAISDIEVEYK--EV-------------------------------------------- 192 (861)
T ss_pred HHHCCCeeecCcccccCCCCCCcchHhHhhcc--cc--------------------------------------------
Confidence 99999999999999999999999999999642 11
Q ss_pred hccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHh
Q 002411 285 IGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTEL 364 (926)
Q Consensus 285 i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 364 (926)
+....+|+|++.+.+ +.+|+|||||||||+|++||||||++++ |.
T Consensus 193 --~~~~~~i~f~~~~~~----~~~l~vaTtrPeTl~~~~av~V~P~~~r---------------y~-------------- 237 (861)
T TIGR00422 193 --KGKLYYIRYPLANGS----KDYLVVATTRPETMFGDTAVAVHPEDER---------------YK-------------- 237 (861)
T ss_pred --cceEEEEEEEecCCC----CCEEEEEeCCcchhhhCeEEEECCCchH---------------HH--------------
Confidence 123458999996421 3699999999999999999999999853 32
Q ss_pred hhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccccc
Q 002411 365 QKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTG 444 (926)
Q Consensus 365 ~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~ 444 (926)
.|.|+++.||++++.+||+.++||++++|||+||+|||||++||+++++||||++++++.+
T Consensus 238 ------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~------------- 298 (861)
T TIGR00422 238 ------HLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDED------------- 298 (861)
T ss_pred ------HhcCCEEEcCCCCCcceeeecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCC-------------
Confidence 2589999999999999999999999999999999999999999999999999999999875
Q ss_pred CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCce----------------------------------------
Q 002411 445 EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK---------------------------------------- 484 (926)
Q Consensus 445 ~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~---------------------------------------- 484 (926)
|.+.... ..+.|+.+.+|+++|++.|.+.|...+
T Consensus 299 -G~~~~~~-----~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~ 372 (861)
T TIGR00422 299 -GLLNENA-----GKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEA 372 (861)
T ss_pred -CeEcCCC-----cccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHH
Confidence 4433221 358899999999999999999886321
Q ss_pred ----eEee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccc
Q 002411 485 ----KVNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK 546 (926)
Q Consensus 485 ----~~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~ 546 (926)
++++ +++||||||||+||||||+|+|++||.+.+..+...+.. |
T Consensus 373 ~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~-~----------------- 434 (861)
T TIGR00422 373 AEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDD-K----------------- 434 (861)
T ss_pred hhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhh-h-----------------
Confidence 1222 578999999999999999999988876543322211100 0
Q ss_pred cccceecccCCCC--CCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhh
Q 002411 547 AVSWVQTTEHSSG--KPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 547 ~~~w~~~~~~~~g--~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw 623 (926)
. .|| ..++|++|||||||||+ ||+...++|.++.+ .++|||+|++++|+|++ |||
T Consensus 435 ------~---~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~------~~~~~P~d~~~~G~Dii-------~fw 492 (861)
T TIGR00422 435 ------T---NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKD------LKKFYPTDLLVTGYDII-------FFW 492 (861)
T ss_pred ------h---ccCCcccEEECCCcccceeccchHHHHHhCCCCChHH------HhhcCCcceeecchhhh-------hHH
Confidence 0 133 46899999999999998 67777788865421 25678999999999998 555
Q ss_pred hchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCc
Q 002411 624 HKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 703 (926)
Q Consensus 624 ~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGa 703 (926)
+..+. +++.++.+..||++|++ ||++++.+ |+|||||+||+|+|.++|++|||
T Consensus 493 ~~~~~-----------------~~~~~~~~~~Pfk~v~~--hG~v~d~~--------G~KMSKS~GN~i~p~~~i~~yga 545 (861)
T TIGR00422 493 VARMI-----------------FRSLALTGQVPFKEVYI--HGLVRDEQ--------GRKMSKSLGNVIDPLDVIEKYGA 545 (861)
T ss_pred HHHHH-----------------HHHHHhcCCCchheEEE--eeEEECCC--------CCCCCcCCCCCCCHHHHHHHhCh
Confidence 43211 23344567899999998 79999876 99999999999999999999999
Q ss_pred hhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHH---hcCCCCCC-CCCCCcccCCCCchHHHHHHHHHHHHHHHH
Q 002411 704 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDG-TFKGGTVVNDEEPTLEQLCTLHKCIAKVTE 779 (926)
Q Consensus 704 D~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~---~~~~~~~~-~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~ 779 (926)
|++|||+++.++..++.+|+++.+.++.+|++++||.. ..+. ... ..... .......|+|++++++++++++++
T Consensus 546 DalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~-~~~~~~~~~-~~~~~~~D~wil~~l~~~~~~v~~ 623 (861)
T TIGR00422 546 DALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNL-SDDLELSGG-EEKLSLADRWILSKLNRTIKEVRK 623 (861)
T ss_pred HHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccccc-cccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999843 2211 110 01100 011234588999999999999999
Q ss_pred HHhcccHHHHHHHHHHHH-HHHhcccc--------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC-C
Q 002411 780 EIEGTRFNTGISAMMEFI-NAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS-N 837 (926)
Q Consensus 780 ~~e~~~f~~ai~~l~~f~-~~~~~~~~--------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~-~ 837 (926)
+|++|+|+.|++.+++|+ +.+.+|+- .+.++|+.+++||+|||||+|||||++|+.. +
T Consensus 624 ~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~~~ 703 (861)
T TIGR00422 624 ALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEGAD 703 (861)
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCcccCC
Confidence 999999999999999996 45444320 1236899999999999999999999999754 7
Q ss_pred CccccCCCCCCcccCC
Q 002411 838 SLAYESFPKANPDYLK 853 (926)
Q Consensus 838 sv~~~~WP~~de~~l~ 853 (926)
||++++||++++..++
T Consensus 704 si~~~~~P~~~~~~~d 719 (861)
T TIGR00422 704 SIMLQSYPVVDAEFVD 719 (861)
T ss_pred ceeecCCCCcccccCC
Confidence 9999999998876543
No 21
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-119 Score=1119.09 Aligned_cols=607 Identities=29% Similarity=0.493 Sum_probs=504.0
Q ss_pred hcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccc
Q 002411 59 VVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (926)
Q Consensus 59 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (926)
++++.||+.++|++||++|+++++|+... + ++++|+|++||||+||. |||||++|++++|+++||+||+||+|+|+
T Consensus 4 ~~~~~y~~~~~E~~~~~~W~~~~~f~~~~--~-~~~~f~i~~ppP~~~G~-lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~ 79 (874)
T PRK05729 4 ELPKTYDPKEVEAKWYQKWEEKGYFKPDD--N-SKKPFSIVIPPPNVTGS-LHMGHALNNTLQDILIRYKRMQGYNTLWL 79 (874)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcccCc--C-CCCCEEEecCCCCCCCc-chHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 46788999999999999999999999753 2 35569999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHH----hCCCch------------HHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 139 MGWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 139 ~G~D~~Glpie~~a~~----~g~~~~------------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
+||||||+|+|.++++ .|+++. +|+.++.+.+++||++||+++||+|+|+|+|+.|.++|+++|
T Consensus 80 ~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F 159 (874)
T PRK05729 80 PGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVF 159 (874)
T ss_pred CCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHH
Confidence 9999999998876543 365543 468999999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHH
Q 002411 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (926)
.+|+++||||++.++|+|||.|+|+||++||++. +.
T Consensus 160 ~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~--~~------------------------------------------ 195 (874)
T PRK05729 160 VRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYK--EV------------------------------------------ 195 (874)
T ss_pred HHHHHCCCEeecCcccccCCCCCCcchhhhcccc--cc------------------------------------------
Confidence 9999999999999999999999999999999742 11
Q ss_pred hhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHh
Q 002411 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362 (926)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 362 (926)
.+..++|+|++.+. +.+|+|||||||||+|++||||||+++. |.
T Consensus 196 ----~~~~~~i~f~~~~~-----~~~l~vaTtrPeTl~~~~avaV~P~d~r---------------y~------------ 239 (874)
T PRK05729 196 ----KGKLWHIRYPLADG-----SDYLVVATTRPETMLGDTAVAVNPEDER---------------YK------------ 239 (874)
T ss_pred ----cceEEEEEEEecCC-----CcEEEEEeCCcchhhcCeeEeECCCccH---------------HH------------
Confidence 12456899998532 4699999999999999999999999852 42
Q ss_pred HhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccc
Q 002411 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (926)
Q Consensus 363 ~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y 442 (926)
.|.|+++.||++++.+||+.++||++++|||+||++||||++||+++++||||++++++++
T Consensus 240 --------~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~----------- 300 (874)
T PRK05729 240 --------HLIGKTVILPLVGREIPIIADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDED----------- 300 (874)
T ss_pred --------HhcCCEEECCCCCCeeeEecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCC-----------
Confidence 2579999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee-------------------------------------
Q 002411 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------------- 485 (926)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~------------------------------------- 485 (926)
|.+.... ..|.|+.+.+|+++|++.|++.|...+.
T Consensus 301 ---G~~~~~~-----~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~ 372 (874)
T PRK05729 301 ---GTINENP-----GEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPAL 372 (874)
T ss_pred ---CeEcCCC-----cccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHH
Confidence 4443221 3588999999999999999998875221
Q ss_pred -------Eee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCc
Q 002411 486 -------VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPL 544 (926)
Q Consensus 486 -------~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l 544 (926)
+++ +++||||||||+||||||+|+|++ |.+ .+.... +
T Consensus 373 ~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~-~~~-~v~~~~-------------------~- 430 (874)
T PRK05729 373 EAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDED-GEV-YVGREE-------------------P- 430 (874)
T ss_pred HHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCC-CcE-EeCCcc-------------------c-
Confidence 111 478999999999999999999965 432 221110 0
Q ss_pred cccccceecccCCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhh
Q 002411 545 SKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 545 ~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw 623 (926)
..|. +..++|++|||||||||+ |++..+++|.+..+ .++|||+|++++|+|++ |||
T Consensus 431 --------~~~~--~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~------~~~~~P~d~~~~G~Dii-------~~W 487 (874)
T PRK05729 431 --------EARE--KALLTQDEDVLDTWFSSALWPFSTLGWPEKTED------LKRFYPTSVLVTGFDII-------FFW 487 (874)
T ss_pred --------cccc--ccCeEeCCceecceecCCccHHHHhCCCCCcHH------HHhcCCccccccccccc-------chH
Confidence 0011 125899999999999997 89888888864322 25678999999999997 777
Q ss_pred hchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCc
Q 002411 624 HKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 703 (926)
Q Consensus 624 ~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGa 703 (926)
+..+. +++.++.+..||++|++ ||+|++.+ |+|||||+||||+|.++|++|||
T Consensus 488 ~a~~~-----------------~~~~~~~~~~Pfk~v~~--hG~v~d~~--------G~KMSKSlGNvIdP~dvi~~yGa 540 (874)
T PRK05729 488 VARMI-----------------MMGLHFTGQVPFKDVYI--HGLVRDEQ--------GRKMSKSKGNVIDPLDLIDKYGA 540 (874)
T ss_pred HHHHH-----------------HHHHHhcCCCchhheEE--eeeEECCC--------CCCcccCCCCCCCHHHHHHHhCh
Confidence 75422 23445578899999998 79999876 99999999999999999999999
Q ss_pred hhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHH---hcCCCCCCCCCCCccc---CCCCchHHHHHHHHHHHHHH
Q 002411 704 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKV 777 (926)
Q Consensus 704 D~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~---~~~~~~~~~~~~~~~~---~~~~~d~~~l~~l~~~i~~v 777 (926)
|+||||+++.++.++|.+|+++.+.+..+|++++||.. ..+. . .+...... .....|+|++++++++++++
T Consensus 541 DalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~-~--~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v 617 (874)
T PRK05729 541 DALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNL-E--GADVGELPDPEELSLADRWILSRLNRTVAEV 617 (874)
T ss_pred HHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhc-c--cCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999988743 2221 1 11111111 12345789999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHH-HHhcccc-----------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC---
Q 002411 778 TEEIEGTRFNTGISAMMEFIN-AAYKWEK-----------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS--- 836 (926)
Q Consensus 778 ~~~~e~~~f~~ai~~l~~f~~-~~~~~~~-----------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~--- 836 (926)
+++|++|+|+.|++.+++|+. .+++|+- .+.++|+.+++||+|||||+|||||++|+..
T Consensus 618 ~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~~~~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~~~~ 697 (874)
T PRK05729 618 TEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQEAAKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPLGIE 697 (874)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccCCCC
Confidence 999999999999999999983 4444321 1236899999999999999999999999753
Q ss_pred CCccccCCCCCCccc
Q 002411 837 NSLAYESFPKANPDY 851 (926)
Q Consensus 837 ~sv~~~~WP~~de~~ 851 (926)
+||+.++||++++..
T Consensus 698 ~si~~~~~P~~~~~~ 712 (874)
T PRK05729 698 ESIMLAPWPEADEAI 712 (874)
T ss_pred CceeecCCCCCCccc
Confidence 389999999987654
No 22
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=6.1e-114 Score=1074.99 Aligned_cols=675 Identities=20% Similarity=0.268 Sum_probs=497.6
Q ss_pred ccCCCchhhhHHHHHHHHhCCCCCCCCCCC--CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccc
Q 002411 61 KRAYPFHEIEPKWQSYWENNRTFRTPDEID--TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHP 138 (926)
Q Consensus 61 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~--~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~ 138 (926)
++++++.++|++||++|+++++|+...+.+ .++++|+++++|||+||. |||||++|++++|+++||+||+||+|+|+
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~-lHiGHa~t~t~~D~i~Rykrm~G~~vlfp 88 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGL-LHLGHAFSLSKLEFAAAYHRLRGANVLLP 88 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCC-cchhhHHHHHHHHHHHHHHHcCCCccCCC
Confidence 367999999999999999999999875322 245889999999999998 99999999999999999999999999999
Q ss_pred ccccccChHHHHHHHHh-------CCCc----------------------------------hHHH--------------
Q 002411 139 MGWDAFGLPAEQYAIET-------GTHP----------------------------------KITT-------------- 163 (926)
Q Consensus 139 ~G~D~~Glpie~~a~~~-------g~~~----------------------------------~~~~-------------- 163 (926)
+||||||+||+..|++. |..+ ++++
T Consensus 89 ~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~ 168 (1084)
T PLN02959 89 FAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMR 168 (1084)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHh
Confidence 99999999999988542 3221 0111
Q ss_pred -------------------HHHHHHHHHHHHHcCccccccCccccCC--hhHHHHHHHHHHHHhhCCcEEEeccCccccC
Q 002411 164 -------------------LRNINRFRTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222 (926)
Q Consensus 164 -------------------~~~~~~~~~~l~~lgi~~Dw~~~~~T~d--~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~ 222 (926)
+..-..++++|++||+++||+|.|.|+| |.|.++++|+|.+|+++|+||++.+||+|||
T Consensus 169 ~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp 248 (1084)
T PLN02959 169 SFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSP 248 (1084)
T ss_pred hcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCC
Confidence 1111456889999999999999999999 9999999999999999999999999999999
Q ss_pred CCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCce--EEEEeecC
Q 002411 223 ALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAE--MDFRVLDS 300 (926)
Q Consensus 223 ~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~--v~f~~~~~ 300 (926)
.|+|+||++|++++... +++.| |+|++.+.
T Consensus 249 ~~~t~ladhe~~~~e~~------------------------------------------------~~~~y~~ikf~v~~~ 280 (1084)
T PLN02959 249 LDGQPCADHDRASGEGV------------------------------------------------GPQEYVLIKMEVLPP 280 (1084)
T ss_pred CCCCCchhhHHhcCCCC------------------------------------------------CcceeEEEEEeecCc
Confidence 99999999999865211 11112 44554321
Q ss_pred --------CCCccceeEEEeecCCccccCCcEEEECCCCccchhcccc-cchh----HHH--HHHHHHhccchhhHhHhh
Q 002411 301 --------DGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST-TQSQ----NIE--EYKNLASRKSDLERTELQ 365 (926)
Q Consensus 301 --------~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~-~~~~----~~~--~y~~~~~~~~~~~~~~~~ 365 (926)
.+ .+.+++||||||||||||+||||||+..|+.+.+.. +... ... .|........++ ..+.
T Consensus 281 ~~~~~~~~~~--~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~--~~l~ 356 (1084)
T PLN02959 281 FPGKLKALEG--KKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKP--TCLV 356 (1084)
T ss_pred chhhhhhcCC--CCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCc--EEEE
Confidence 11 247999999999999999999999999998776542 1111 111 132211111111 2234
Q ss_pred hhccccccceEEecCCCCCc-ccEEecCcccCCCCCCceeecCCCChhhHHH----------HHHcCC--------ceee
Q 002411 366 KEKTGVFSGCYARNPASGEA-IPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKFDI--------SIHS 426 (926)
Q Consensus 366 ~~~~~~l~g~~~~~P~~~~~-~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~k~~L--------pi~~ 426 (926)
+.+|..|.|+.+.||+++.+ +||+++.||++++|||+||+|||||++||.+ +++||| ++++
T Consensus 357 ~~~G~~L~G~~~~~Pl~~~~~i~ilp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~ 436 (1084)
T PLN02959 357 ELTGYDLIGLPLKSPLAFNEVIYALPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVP 436 (1084)
T ss_pred EEEHHHhCCCEEECCCCCCcceeEeceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcC
Confidence 56777899999999999977 8999999999999999999999999999997 688998 4467
Q ss_pred eecCCC-CC---------------------Cccccccccc---CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCC
Q 002411 427 VVMPDD-ES---------------------SSQSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481 (926)
Q Consensus 427 vv~~~~-~~---------------------~~~~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~ 481 (926)
+|+..+ |. .++++..|.. +|+|. . ..|.|+.+.+|+++|++.|.+.|.
T Consensus 437 iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~m~-~------g~~~G~~v~eAr~~Ii~~L~~~G~ 509 (1084)
T PLN02959 437 IINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGTML-V------GEYAGRKVQEAKPLIKKKLIEAGQ 509 (1084)
T ss_pred ccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccccc-C------cCcCCcCHHHHHHHHHHHHHhCCC
Confidence 776542 10 0112233332 36553 1 358999999999999999999985
Q ss_pred Cce------e------------------------------------Eee--------------ecCCeeeccccccCCcc
Q 002411 482 GKK------K------------------------------------VNY--------------KLRDWLFARQRYWGEPI 505 (926)
Q Consensus 482 ~~~------~------------------------------------~~~--------------~l~DW~ISRQR~WG~PI 505 (926)
... . +++ +++||||||||+|||||
T Consensus 510 l~~~~ep~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpI 589 (1084)
T PLN02959 510 AILYSEPEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRI 589 (1084)
T ss_pred ceeeeEcCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcC
Confidence 421 0 011 47899999999999999
Q ss_pred CceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcCcccccc-chhhhhcC
Q 002411 506 PVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSC-WYYLRFMD 584 (926)
Q Consensus 506 Pv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~ 584 (926)
| |+|. .-+..++++++++....++++...+... ....| ... +-..++||||+||+|+ |++.. ++
T Consensus 590 P-Wd~~--~~ieslsdstiy~a~yti~~~~~~~~~~----g~~~~--~i~-----~~~~~~dV~D~wF~Sg~~p~~t-~~ 654 (1084)
T PLN02959 590 P-WDEQ--FLIESLSDSTIYMAYYTVAHLLQGGDMY----GKDKS--SIK-----PEQMTDEVWDFVFCGGPLPKSS-DI 654 (1084)
T ss_pred C-cccc--eeeccCCCCceeechhhHHHHHhhhhcc----CCccc--cCC-----hhhcCccceeEeecCCCccccc-CC
Confidence 9 5431 1122334445554433333221111000 00011 000 1122689999999886 76654 55
Q ss_pred CCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcc-eEEee
Q 002411 585 PKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEE-KVMKS 663 (926)
Q Consensus 585 p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~-~v~~~ 663 (926)
|...-+.. +...+||||+|+|++|+||+.+|+.|++|+|.+ +.+..||. .+++
T Consensus 655 p~~~l~~~-r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~a------------------------l~~~~P~p~~v~v- 708 (1084)
T PLN02959 655 PAELLEKM-KQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTA------------------------IWAEEHWPRGFRC- 708 (1084)
T ss_pred CHHHHhhh-hHHHHhhCCCeEEEecccHHHHHHHHHHHHHHH------------------------hcCCCCCCceEEE-
Confidence 54221101 122378999999999999999999998887743 23567884 5776
Q ss_pred cceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhc
Q 002411 664 GDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVG 743 (926)
Q Consensus 664 ~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~ 743 (926)
||+|+.+ |+|||||+||+|+|.++|++||||++|||++++++..++.+|+++....+.+.++++++++..
T Consensus 709 -~G~V~~~---------G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~~~~~l~n~~~~~~~ 778 (1084)
T PLN02959 709 -NGHLMLN---------SEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAILRLTKEIAWMEE 778 (1084)
T ss_pred -ccEEecC---------CcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 8999954 999999999999999999999999999999988888899999988887777777777666533
Q ss_pred CCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHhc---cc-------cchHHHHH
Q 002411 744 SSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISA-MMEFINAAYK---WE-------KHPRKIIE 812 (926)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~-l~~f~~~~~~---~~-------~~~~~~l~ 812 (926)
.......+... ......|+|++++++.++++++++|++|+|+.|++. +++|.+.... +. ..++++|+
T Consensus 779 ~~~~~~~~~~~--~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr~~~~~~~~~~~~L~~vl~ 856 (1084)
T PLN02959 779 VLAAESSLRTG--PPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYRLSCGSGGMNRDLVWRFMD 856 (1084)
T ss_pred hhhhhcccCCc--ccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHhhccccchHHHHHHHHHHH
Confidence 21110111111 112346899999999999999999999999999987 4545543321 11 13457899
Q ss_pred HHHHHhhchhhHHHHHHHHHc-CCCCCccccCCCCCC
Q 002411 813 PFILLLAPYAPHMSEELWFRL-GHSNSLAYESFPKAN 848 (926)
Q Consensus 813 ~l~~lLaP~~P~~aEelw~~L-~~~~sv~~~~WP~~d 848 (926)
.+++||||||||+|||||+.| +.++||+.+.||.++
T Consensus 857 ~~l~LLaP~~PfiaEEiW~~l~~~~~sI~~~~wP~~~ 893 (1084)
T PLN02959 857 VQTRLITPICPHYAEHVWREILKKEGFAVTAGWPVAG 893 (1084)
T ss_pred HHHHHHhhhhhHHHHHHHHhccCCCCeEEecCCCCCC
Confidence 999999999999999999999 677899999999876
No 23
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.3e-113 Score=1065.95 Aligned_cols=660 Identities=24% Similarity=0.401 Sum_probs=506.2
Q ss_pred hhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChH
Q 002411 68 EIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLP 147 (926)
Q Consensus 68 ~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glp 147 (926)
+||++||++|+++++|+... + ++++|+|++||||+||. |||||+++++++|+++||+||+|++|+|++||||||+|
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~--~-~~~kf~i~~ppPy~nG~-lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~p 77 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADP--D-DREKFFLTMAYPYLNGV-MHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTP 77 (938)
T ss_pred hHHHHHHHHHHhCCCcccCC--C-CCCceEEecCCCCCCCC-cccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCc
Confidence 58999999999999999763 2 57899999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHh---------------C---------CCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHH
Q 002411 148 AEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (926)
Q Consensus 148 ie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~ 203 (926)
|+..|.+. + .+|.+++.++...++++|++||+++||+|+|.|+||.|.++++|+|.
T Consensus 78 i~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~ 157 (938)
T TIGR00395 78 ILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMN 157 (938)
T ss_pred hHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHH
Confidence 98877652 1 23467788889999999999999999999999999999999999999
Q ss_pred HHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHh
Q 002411 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (926)
Q Consensus 204 ~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (926)
+|+++|+||++.++|+|||.|+|+|||+|+.++...
T Consensus 158 ~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~-------------------------------------------- 193 (938)
T TIGR00395 158 KLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGV-------------------------------------------- 193 (938)
T ss_pred HHHHCCCEecCCeeEeecCCCCCCCchhHhccCCcc--------------------------------------------
Confidence 999999999999999999999999999999864211
Q ss_pred hhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHH-HHHHHHHhccchhhHh
Q 002411 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI-EEYKNLASRKSDLERT 362 (926)
Q Consensus 284 ~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~ 362 (926)
+..++++|+|++.+ .+.+++|||||||||+|++||||||+++|+.+.+.++..... +....+...... ..
T Consensus 194 --~~~~~~~ikf~~~~-----~~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q~~~--~~ 264 (938)
T TIGR00395 194 --TIVEYILIKFELED-----GAFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQKLK--YK 264 (938)
T ss_pred --ccceEEEEEEEcCC-----CceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhcccc--ee
Confidence 01245689999843 136899999999999999999999999998776543311000 111111111111 11
Q ss_pred HhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHc--------------CCceeeee
Q 002411 363 ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKF--------------DISIHSVV 428 (926)
Q Consensus 363 ~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~--------------~Lpi~~vv 428 (926)
.+.+.+++.|.|+++.||++++.+||++++||++++|||+||+|||||++||++++++ ++++++++
T Consensus 265 ~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii 344 (938)
T TIGR00395 265 PIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLI 344 (938)
T ss_pred EEEEEchHhccCCEEECCCCCCeeEEeecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccce
Confidence 2344567889999999999999999999999999999999999999999999998863 35566666
Q ss_pred cCCC-CCC---------------------ccccccccc---CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCc
Q 002411 429 MPDD-ESS---------------------SQSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK 483 (926)
Q Consensus 429 ~~~~-~~~---------------------~~~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~ 483 (926)
+.++ |.+ +++...|.+ +|+|.... ..+.|+.+.+|+++|+++|.+.|.+.
T Consensus 345 ~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~-----~~~~G~~v~ear~~i~~~L~~~g~~~ 419 (938)
T TIGR00395 345 HTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNI-----PPYKGMKVSEAKEKVKADLIDAGLAD 419 (938)
T ss_pred ecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCceeccCC-----cccCCcCHHHhHHHHHHHHHHCCCce
Confidence 4431 211 112345555 68875432 35999999999999999999988763
Q ss_pred eeE--------------------------e-----e---------------------------ecCCeeeccccccCCcc
Q 002411 484 KKV--------------------------N-----Y---------------------------KLRDWLFARQRYWGEPI 505 (926)
Q Consensus 484 ~~~--------------------------~-----~---------------------------~l~DW~ISRQR~WG~PI 505 (926)
... + | +++||||||||+|||||
T Consensus 420 ~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpI 499 (938)
T TIGR00395 420 VMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRL 499 (938)
T ss_pred EeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCccc
Confidence 211 0 1 27899999999999999
Q ss_pred CceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCC
Q 002411 506 PVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDP 585 (926)
Q Consensus 506 Pv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p 585 (926)
|+ . +...+.+++++++++.+..+.++... ..++. -...++++|.||.++=..+....|
T Consensus 500 P~-d--~~~~ieslsdstiY~~~~~i~~~l~~------------------~~~~~-~~l~~ev~D~~~~~~~~~~~t~~~ 557 (938)
T TIGR00395 500 PW-D--EKWLIESLSDSTIYMAYYTIAHYLNK------------------DYYGN-EQMTDEFFDYIFLGKGDVKNTNIP 557 (938)
T ss_pred ce-e--ecEEeeecchhhhhhhhccHHHHhhc------------------cCCCh-HHCCcccCceEEECCCChhhcCCC
Confidence 95 2 11223344555555443332222100 01111 112467788887543111111222
Q ss_pred CCChhhcc--hhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCc-ceEEe
Q 002411 586 KNSKELVD--KTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPE-EKVMK 662 (926)
Q Consensus 586 ~~~~~~~~--~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~-~~v~~ 662 (926)
. ..++ +...++|||+|+|++|+||+.+|++|.+|.|.+++ +..|+ +.+++
T Consensus 558 ~---~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~------------------------~~~~~Pk~i~~ 610 (938)
T TIGR00395 558 L---PAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIF------------------------PEKFWPRGIVV 610 (938)
T ss_pred H---HHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcC------------------------CccccCcEEEE
Confidence 1 1111 12237889999999999999999999887765321 12233 67776
Q ss_pred ecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHh
Q 002411 663 SGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIV 742 (926)
Q Consensus 663 ~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~ 742 (926)
|||++.+ |+|||||+||+|+|.++|++||||++|||+++++++.++.+|+++.+.++.++|.++++++.
T Consensus 611 --~G~vl~~---------G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~~~ 679 (938)
T TIGR00395 611 --NGYVMLE---------GKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAE 679 (938)
T ss_pred --eceEEeC---------CccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999985 89999999999999999999999999999999888999999999999999999999999874
Q ss_pred cCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHhcccc--------chHHHHHH
Q 002411 743 GSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGI-SAMMEFINAAYKWEK--------HPRKIIEP 813 (926)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai-~~l~~f~~~~~~~~~--------~~~~~l~~ 813 (926)
..... .....+ ......|+|+++++++++++++++|++|+|+.|+ +.+++|++.++.|.. ...++++.
T Consensus 680 ~~~~~-~~~~~~--~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Yl~~~~~~~~~~l~~~l~~ 756 (938)
T TIGR00395 680 EITKE-SNLETG--EETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWYRRRGGVNHKDVLARYLET 756 (938)
T ss_pred HHHhh-cccCCC--ccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 32110 000000 0123457899999999999999999999999999 789999988765422 24578999
Q ss_pred HHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccC
Q 002411 814 FILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYL 852 (926)
Q Consensus 814 l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l 852 (926)
+++||+|||||+|||||+.|+.++||+.++||++++..+
T Consensus 757 ~~~LLaP~~P~~aEeiw~~Lg~~~sv~~~~wP~~~~~~~ 795 (938)
T TIGR00395 757 WIKLLAPFAPHFAEEMWEEVGNEGFVSLAKFPEASEPAV 795 (938)
T ss_pred HHHHhcCcccHHHHHHHHHcCCCCeEEecCCCCCCcccC
Confidence 999999999999999999999888999999999887644
No 24
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.4e-110 Score=999.85 Aligned_cols=527 Identities=33% Similarity=0.594 Sum_probs=395.6
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHH
Q 002411 72 KWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY 151 (926)
Q Consensus 72 ~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~ 151 (926)
|||++|+++++|+...+.++++++|++++||||+||. |||||++|++++|+++||+||+||+|++++||||||+|||.+
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~-lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~ 79 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGD-LHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAK 79 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS--BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCc-ccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhh
Confidence 7999999999999775556678999999999999998 999999999999999999999999999999999999999998
Q ss_pred HHHh-CC----------------CchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 152 AIET-GT----------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 152 a~~~-g~----------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+++. |. .|++++.++++.++++|++||+++||+++|.|+||.|.++++|+|.+|+++||||++
T Consensus 80 vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~ 159 (601)
T PF00133_consen 80 VEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRG 159 (601)
T ss_dssp HHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEee
Confidence 8763 43 146788999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEE
Q 002411 215 EVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMD 294 (926)
Q Consensus 215 ~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~ 294 (926)
.+||+|||.|+|+||++||++... .+.+++|+
T Consensus 160 ~~pv~w~p~~~t~lsd~Ev~~~~~------------------------------------------------~~~~~~v~ 191 (601)
T PF00133_consen 160 KKPVNWCPSCQTALSDHEVEYKEV------------------------------------------------KSPSIYVK 191 (601)
T ss_dssp EEEEEEETTTTEEE-GGGEEEEEE------------------------------------------------EEEEEEEE
T ss_pred CCCCCcCcccccchhhhhcccccc------------------------------------------------cCceEEEE
Confidence 999999999999999999974210 24567999
Q ss_pred EEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccc
Q 002411 295 FRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSG 374 (926)
Q Consensus 295 f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g 374 (926)
|++.+.+ +.+++||||||||||||+||+|||+..|+ ...+.....+............. +...++..|.|
T Consensus 192 f~~~~~~----~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g 261 (601)
T PF00133_consen 192 FPLKDGE----EVYLVIWTTRPETLPGNTAIAVNPDFDYV---INGERYIVAKDLVEKLSKQEKTK---LEDFRGKELVG 261 (601)
T ss_dssp EEESSSS----EEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETTEEEEEEHHHHHHHHTTTSSS---EEEEECHHHTT
T ss_pred EEecCcc----ceEEEEEechhhHHhCCeeEEECCCccce---eCCeeehHHHHHHHHHHhhhhhc---ccccCcceecC
Confidence 9995432 36999999999999999999999999997 22221111122222222111111 44567778999
Q ss_pred eEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCc
Q 002411 375 CYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL 454 (926)
Q Consensus 375 ~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~ 454 (926)
+++.||++++.+||++++||++++|||+||+|||||++||+++++++||++++|+++ |.+....
T Consensus 262 ~~~~~P~~~~~~~vi~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~--------------G~~~~~~-- 325 (601)
T PF00133_consen 262 LKYIHPLTGREVPVIPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDED--------------GRFTEEA-- 325 (601)
T ss_dssp SEEE-TTSSSSEEEEEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCT--------------STBBSCC--
T ss_pred cEeccccccceeEEEcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCC--------------ceEeecc--
Confidence 999999999999999999999999999999999999999999999999999999876 3333221
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------E--------------------------ee----
Q 002411 455 ISGLDINGLSCQEATSKVIEWAEKTGNGKKK----------------V--------------------------NY---- 488 (926)
Q Consensus 455 ~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~----------------~--------------------------~~---- 488 (926)
..+.|+.+.+|++.|++.|.+.|..... + ++
T Consensus 326 ---~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~ 402 (601)
T PF00133_consen 326 ---GKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES 402 (601)
T ss_dssp ---STTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST
T ss_pred ---cccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc
Confidence 3589999999999999999999875321 0 00
Q ss_pred ----------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCC
Q 002411 489 ----------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSS 558 (926)
Q Consensus 489 ----------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~ 558 (926)
+++||||||||+||||||+|+|++|+... +.++.+++.... ....|.+....... ...++.|
T Consensus 403 ~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~ 474 (601)
T PF00133_consen 403 YRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVL-VIESTIELIADR---VEKEGIDAWLHKPA----EDKLPCC 474 (601)
T ss_dssp CHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEE-CCGGHHHHHHHH---STHHHHSCTSSHHH----HHHHTTT
T ss_pred chhhhhhhccccccchhhccCCCCccceeeecccCcccc-cccccccccccc---cccccccccccccc----ccccccc
Confidence 46899999999999999999998876543 322322221100 11111111110011 1234788
Q ss_pred CCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCC
Q 002411 559 GKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGS 637 (926)
Q Consensus 559 g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~ 637 (926)
+..++|++|||||||||+ |++....+|.+.. ...++|+|+|+|++|+||+.+|+.++.+.+
T Consensus 475 ~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~~~-----~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~------------- 536 (601)
T PF00133_consen 475 GGELRRDTDVLDTWFDSGLWPFAVLGWPENDR-----EEFEYWYPVDLYIEGKDQIRGWFQSSLFLS------------- 536 (601)
T ss_dssp SSEEEEHS-EE-HHHHHCTCHHHHTTSTTCSC-----HHHHHHSSBSEEEEEGGGTTTHHHHHHHHH-------------
T ss_pred ccceEEeeeeccccccccCCcccccccccccc-----hhccccCCcccccCCccchhhHHHHhHhhc-------------
Confidence 999999999999999997 5566666676632 223788999999999999866655555443
Q ss_pred ccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcC
Q 002411 638 YISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFR 717 (926)
Q Consensus 638 ~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~ 717 (926)
.++.+..||++|++ ||+|++++ |+|||||+||+|+|.++|++||||++|||+++++.+.
T Consensus 537 -----------~~l~~~~pfk~v~~--hG~vld~~--------G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~~~~~ 595 (601)
T PF00133_consen 537 -----------VALFGKEPFKKVIT--HGFVLDED--------GRKMSKSKGNVIDPEDIIEKYGADALRLWLASSADPG 595 (601)
T ss_dssp -----------HHHSSSTSBSEEEE--E--EEETT--------SSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHHS-TT
T ss_pred -----------cccccCCchheeee--cccccccc--------eeecccCCCcccCHHHHHHHhCcHHHHHHHHhcCCcc
Confidence 34467889999998 79999987 9999999999999999999999999999999888888
Q ss_pred CCCcCC
Q 002411 718 DSKTWN 723 (926)
Q Consensus 718 ~~~~~~ 723 (926)
+|.+||
T Consensus 596 ~D~~~s 601 (601)
T PF00133_consen 596 QDINFS 601 (601)
T ss_dssp S-EEE-
T ss_pred cCcccC
Confidence 888875
No 25
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-107 Score=1005.47 Aligned_cols=621 Identities=27% Similarity=0.428 Sum_probs=473.9
Q ss_pred CCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh---------------CC---------CchHHHHH
Q 002411 110 LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET---------------GT---------HPKITTLR 165 (926)
Q Consensus 110 lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~---------------g~---------~~~~~~~~ 165 (926)
|||||+++++++|+++||+||+||+|+|++||||||+|||.+|.+. |+ .|++++.+
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999887532 32 35678888
Q ss_pred HHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCe
Q 002411 166 NINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPV 245 (926)
Q Consensus 166 ~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~ 245 (926)
+.+.++++|++||+++||+|+|.|+||.|+++++|+|.+|+++|+||++.++|+|||.|+|+||++|+.++...
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~~------ 154 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEEP------ 154 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864110
Q ss_pred EEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEE
Q 002411 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (926)
Q Consensus 246 ~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v 325 (926)
+.+++++|+|+ + + .+.+++||||||||||||+||
T Consensus 155 ----------------------------------------~~~~~~~ikf~--~--~--~~~~l~~~TtrPeTl~g~tai 188 (897)
T PRK12300 155 ----------------------------------------EIVEYTLIKFE--E--S--EDLILPAATLRPETIFGVTNL 188 (897)
T ss_pred ----------------------------------------CcceEEEEEEe--C--C--CceEEEEEECCcchhccceEE
Confidence 01344678897 1 1 247999999999999999999
Q ss_pred EECCCCccchhcccccchhHHHHHHH-HHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCcee
Q 002411 326 VVAPEHPLLSSLVSTTQSQNIEEYKN-LASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIM 404 (926)
Q Consensus 326 ~v~p~~~y~~~~~~~~~~~~~~~y~~-~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~ 404 (926)
||||+++|+.+.+.++.....++... ......++ ..+.+.+|..|.|+++.||++++.+||++++||++++|||+||
T Consensus 189 ~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~--~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~V~~~~GTGvV~ 266 (897)
T PRK12300 189 WVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDV--EIIEEIKGSELIGKKVKNPVTGKEVPILPADFVDPDNGTGVVM 266 (897)
T ss_pred EECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCc--eEEEEeehHHhcCCEEECCCCCCeEEEeccCeeecCCCeeeEE
Confidence 99999999876543221111111111 11111111 1233456667999999999999999999999999999999999
Q ss_pred ecCCCChhhHHHHHHcC--------CceeeeecCCC-CCC--------------------cccccccc---cCceEeccC
Q 002411 405 AVPAHDTRDHEFALKFD--------ISIHSVVMPDD-ESS--------------------SQSEKAYT---GEGLIVNSS 452 (926)
Q Consensus 405 ~~Pah~~~D~~~~~k~~--------Lpi~~vv~~~~-~~~--------------------~~~~~~y~---~~g~~~~~~ 452 (926)
+|||||++||+++++++ |++++++..++ |.. +++...|. .+|+|+++.
T Consensus 267 ~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~ 346 (897)
T PRK12300 267 SVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENT 346 (897)
T ss_pred eCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecc
Confidence 99999999999999998 77666664321 100 11234555 378887652
Q ss_pred CcccccccCCCCHHHHHHHHHHHHHHcCCCceeE--------------------------ee------------------
Q 002411 453 NLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV--------------------------NY------------------ 488 (926)
Q Consensus 453 ~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~--------------------------~~------------------ 488 (926)
.++.|+.+++|+++|++.|.+.|.+.+.. +|
T Consensus 347 -----g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~ 421 (897)
T PRK12300 347 -----GEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEI 421 (897)
T ss_pred -----cCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEE
Confidence 35899999999999999999988753211 11
Q ss_pred --------------ecCCeeeccccccCCccCc---eEeCCCCcccccCccccCccCCccccc-CCCCCCCCCccccccc
Q 002411 489 --------------KLRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDF-TPTGTGEPPLSKAVSW 550 (926)
Q Consensus 489 --------------~l~DW~ISRQR~WG~PIPv---~~~~~~~~~~~~~~~~l~~~lp~~~~~-~~~g~~~~~l~~~~~w 550 (926)
+++||||||||+||||||+ |.|+. .+++++++....+.+. ...|.....|. .++
T Consensus 422 ~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~es------l~ds~iY~~~~~i~~~l~~~g~~~~~l~--~~~ 493 (897)
T PRK12300 422 IPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIES------LSDSTIYMAYYTIAHKIREYGIKPEQLT--PEF 493 (897)
T ss_pred ECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeee------ccccchhhhHHHHHHHHHHcCCChHHCC--hhh
Confidence 3789999999999999996 55533 3444444332222111 11121100111 111
Q ss_pred eecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhhee
Q 002411 551 VQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMV 630 (926)
Q Consensus 551 ~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~ 630 (926)
++... ....+++|+|++|+|++.... + . +...++|||+|+|++|+||+.+|++|++|.|.+++
T Consensus 494 ~D~~~-------~~~~~~~~~~~~sg~p~~~~~------~-~-~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~-- 556 (897)
T PRK12300 494 FDYVF-------LGKGDPEEVSKKTGIPKEILE------E-M-REEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIF-- 556 (897)
T ss_pred CceEE-------eCCCccccCchhcCCCHHHHH------H-H-HHHHhccCCceEEEeeeccCccHHHHHHHHHHHhc--
Confidence 11111 112257788888887554321 0 1 12237899999999999999999999988775422
Q ss_pred eecCCCCccccCcccccccccccCCCc-ceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHH
Q 002411 631 CKDVDGSYISADSTDTLGEYEQESIPE-EKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLY 709 (926)
Q Consensus 631 ~~~~~g~~~s~~~~~~~s~~~~~~~P~-~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ 709 (926)
+..|+ +++++ |||++++ |+|||||+||+|+|.++|++||||++|||
T Consensus 557 ----------------------~~~~~Pk~v~~--hG~vl~~---------G~KMSKS~GNvVdp~eii~~yGaDalRl~ 603 (897)
T PRK12300 557 ----------------------PEEKWPRGIVV--NGFVLLE---------GKKMSKSKGNVIPLRKAIEEYGADVVRLY 603 (897)
T ss_pred ----------------------CCCccCcEEEE--cceEEEC---------CccccCcCCCCCCHHHHHHHcChHHHHHH
Confidence 23355 67776 8999985 99999999999999999999999999999
Q ss_pred hhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHH
Q 002411 710 EMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTG 789 (926)
Q Consensus 710 ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~a 789 (926)
+++++++.++.+|+++.+.++.++++|+|+++..... .. .. ......|+|+++++++++++++++|++|+|++|
T Consensus 604 L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~--~~--~~--~~~~~~D~wils~l~~~i~~v~~~~e~~~~~~A 677 (897)
T PRK12300 604 LTSSAELLQDADWREKEVESVRRQLERFYELAKELIE--IG--GE--EELRFIDKWLLSRLNRIIKETTEAMESFQTRDA 677 (897)
T ss_pred HHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhc--CC--Cc--cccCHhHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9998899999999999999999999999998743210 00 00 012345889999999999999999999999999
Q ss_pred HHHHH-HHHHHHhcccc--------chHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccCC
Q 002411 790 ISAMM-EFINAAYKWEK--------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLK 853 (926)
Q Consensus 790 i~~l~-~f~~~~~~~~~--------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l~ 853 (926)
+++++ .+.+.++.|.. ...++++.+++||+|||||+|||||+.|+.++||+.+.||++++..++
T Consensus 678 ~~~i~~~l~~~~n~Yi~~~k~~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~~~sv~~~~wP~~~~~~~d 750 (897)
T PRK12300 678 VQEAFYELLNDLRWYLRRVGEANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGGEGFVSLEKWPEPDESKID 750 (897)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCCCeEEeCCCCCCCcccCC
Confidence 98776 55577765432 245789999999999999999999999998889999999998876543
No 26
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-106 Score=903.56 Aligned_cols=678 Identities=22% Similarity=0.316 Sum_probs=502.5
Q ss_pred cCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc
Q 002411 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (926)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (926)
..+|-...|.+.++-|....+++... .+..++.|.++| +||. |||||++|++++||+.||+.++|++|++++||
T Consensus 28 v~~Ns~gr~~q~~evi~~~~~~~~ql-s~~q~~~f~L~d----anG~-lhlghalnkILkdIinr~~laqg~~alyvpGw 101 (937)
T KOG0433|consen 28 VHFNSTGRIGQVIEVIQPPEILSSQL-SDQQRVEFELKD----ANGN-LHLGHALNKILKDIINRILLAQGKSALYVPGW 101 (937)
T ss_pred cccccccchHHHHHHhCChHHHHHHH-hhccCceEEEec----cCCC-ccchHHHHHHHHHHHHHHHHhcCceeccCCCC
Confidence 44666667778888888888776543 355678899998 9998 99999999999999999999999999999999
Q ss_pred cccChHHH-HHHHHh------CCCc-------hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhh
Q 002411 142 DAFGLPAE-QYAIET------GTHP-------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLK 207 (926)
Q Consensus 142 D~~Glpie-~~a~~~------g~~~-------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~ 207 (926)
||||+|+| .+|.+. ..+| +.++.+.|+++++.|+|+||+.||+++|.|+||.|.....++|.+||+
T Consensus 102 DchGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lye 181 (937)
T KOG0433|consen 102 DCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYE 181 (937)
T ss_pred CcCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHh
Confidence 99999999 566541 1233 456788899999999999999999999999999999999999999999
Q ss_pred CCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhcc
Q 002411 208 RGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGR 287 (926)
Q Consensus 208 ~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~ 287 (926)
+|||||+.+||+|+|+..|+||++|++++... .
T Consensus 182 kgLvyR~~KPVyWSpSSRTALAEaELEYn~nH-----------------------------------------------~ 214 (937)
T KOG0433|consen 182 KGLVYRSFKPVYWSPSSRTALAESELEYNDNH-----------------------------------------------Q 214 (937)
T ss_pred ccceeccCCcceecCcchhhhhhhhccCCcCC-----------------------------------------------c
Confidence 99999999999999999999999999965211 4
Q ss_pred CCCceEEEEeecCCC-------CccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhh
Q 002411 288 SEGAEMDFRVLDSDG-------QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLE 360 (926)
Q Consensus 288 s~~~~v~f~~~~~~~-------~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~ 360 (926)
|.++||+|++.+..- ...+.|++||||||||||+|.||++||+..|+.+........ +-|+.......+++
T Consensus 215 S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~--~~ylvas~L~~~fe 292 (937)
T KOG0433|consen 215 STSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTS--TFYLVASKLLEEFE 292 (937)
T ss_pred ceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcc--eEEEEccchhhhhh
Confidence 788999999975322 223589999999999999999999999999976655411100 01111111111111
Q ss_pred H------hHhhhhccccccceEEecCCCC-CcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCC
Q 002411 361 R------TELQKEKTGVFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDE 433 (926)
Q Consensus 361 ~------~~~~~~~~~~l~g~~~~~P~~~-~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~ 433 (926)
. ......++..|.|.+|.||+.+ ...|++.++||+++.|||+||+|||||++||.+|.++|||+.++||.. |
T Consensus 293 ~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~-G 371 (937)
T KOG0433|consen 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSR-G 371 (937)
T ss_pred hhcCcceeeeeecchhhccCceecCcCccccCCccccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCC-C
Confidence 1 1122355667899999999754 579999999999999999999999999999999999999999999976 5
Q ss_pred CCccccc-cccc-----Cc-------------------------------eEeccCCcccccccCCCCHHHH-HHHHHHH
Q 002411 434 SSSQSEK-AYTG-----EG-------------------------------LIVNSSNLISGLDINGLSCQEA-TSKVIEW 475 (926)
Q Consensus 434 ~~~~~~~-~y~~-----~g-------------------------------~~~~~~~~~~~~~~~gl~~~~a-~~~i~~~ 475 (926)
.++..++ .+.| +| +++... .+|++++.+.....+ .-.-+++
T Consensus 372 ~yT~ea~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAs-eQWFi~~e~~k~~A~~al~~Vk~ 450 (937)
T KOG0433|consen 372 CYTREAGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRAS-EQWFIDVEEIKKRASMALDDVKV 450 (937)
T ss_pred ceecccccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecc-hhheeeHHhhhhHHHHHHhhcee
Confidence 5543332 2222 22 111111 136665555432211 1112233
Q ss_pred HHHcCCCcee-EeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecc
Q 002411 476 AEKTGNGKKK-VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT 554 (926)
Q Consensus 476 l~~~g~~~~~-~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~ 554 (926)
.+..+..+.. ..-...+|||||||.||+|||++|.++.|++...+. .+-+ .....+.+|++.+.-...++|+...
T Consensus 451 ~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~-~~~h---~~~~~eqeGsD~Ww~~~~eellpe~ 526 (937)
T KOG0433|consen 451 APGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSL-IEWH---AKLTREQEGSDVWWEIDVEELLPEE 526 (937)
T ss_pred CCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHH-HHHH---HHHHHHHhCCcceEeCChhHhCcHh
Confidence 3333322211 112357999999999999999999987765543322 1111 1122345676544433333443221
Q ss_pred c----CCCCCCCcccCCCcCcccccc--chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhh
Q 002411 555 E----HSSGKPARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQY 628 (926)
Q Consensus 555 ~----~~~g~~~~re~d~mD~WfdSs--w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~ 628 (926)
. +...+.+.|.|||||+||||+ |.++.- .. + + .++|+|++|.||. |+|
T Consensus 527 ~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~~---~~------~---~--~~aDv~LEG~DQ~-------rGW----- 580 (937)
T KOG0433|consen 527 EVREIPDIASEYKKGTDIMDVWFDSGSSWSAVLD---NE------R---E--HVADVYLEGVDQF-------RGW----- 580 (937)
T ss_pred hhcccchhHHHhccCCceeeeEecCCCcceeecC---CC------C---C--cceeeEEecchhc-------chH-----
Confidence 1 123456899999999999885 765531 10 1 1 4899999999994 877
Q ss_pred eeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhh------cC
Q 002411 629 MVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE------YG 702 (926)
Q Consensus 629 ~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~------yG 702 (926)
|+|++ ++|++..+++||+.|++ |||++|++ |.|||||+||||+|..+++. ||
T Consensus 581 ---------FQSsL---LTsvA~q~kAPYk~viv--HGFtlDE~--------G~KMSKSlGNVidP~~v~~G~~k~payG 638 (937)
T KOG0433|consen 581 ---------FQSSL---LTSVAVQNKAPYKKVIV--HGFTLDEN--------GNKMSKSLGNVVDPTMVTDGSLKQPAYG 638 (937)
T ss_pred ---------HHHHH---HHHHHHhccCCchheee--eeeEecCC--------ccchhhcccCcCCHHHHhCCcccCCCcc
Confidence 67777 89999999999999998 79999997 99999999999999999998 99
Q ss_pred chhhhHHhhhcCCcCCCCcCCchhh---HHHHHHHHHHHHHHhcCCCCCCCCCCC--ccc--CCCCchHHHHHHHHHHHH
Q 002411 703 ADSLRLYEMFMGPFRDSKTWNTSGI---EGVHRFLGRMWRLIVGSSLPDGTFKGG--TVV--NDEEPTLEQLCTLHKCIA 775 (926)
Q Consensus 703 aD~lRl~ll~~~~~~~~~~~~~~~i---~~~~r~L~r~~~~~~~~~~~~~~~~~~--~~~--~~~~~d~~~l~~l~~~i~ 775 (926)
||+||||++.+....+. ....+-+ .+..+.+++++||++++.. ++... ..+ +....|+..+.+++.+++
T Consensus 639 aD~LR~WVA~~~~t~d~-~iGp~il~qv~e~l~K~R~T~RfllGnl~---d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~ 714 (937)
T KOG0433|consen 639 ADGLRFWVAGSENTGES-KIGPKILDQVDEKLIKFRNTFRFLLGNLQ---DFDGKQVKFPLKDLRYIDQYMLQQLDAIVK 714 (937)
T ss_pred ccceeeeeecccccCce-ecCHHHHHHHHHHHHHHHhHHHHHhhccc---ccCCccccccchhhhhhhHHHHHHHHHHHH
Confidence 99999999954443333 3444444 4556788999999988752 22222 111 112347888999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHH-Hhccc----------c------------chHHHHHHHHHHhhchhhHHHHHHHHH
Q 002411 776 KVTEEIEGTRFNTGISAMMEFINA-AYKWE----------K------------HPRKIIEPFILLLAPYAPHMSEELWFR 832 (926)
Q Consensus 776 ~v~~~~e~~~f~~ai~~l~~f~~~-~~~~~----------~------------~~~~~l~~l~~lLaP~~P~~aEelw~~ 832 (926)
++++.|++|+|++++..|..|++. ++.++ . .+.+++..+++.++||+||++||+||.
T Consensus 715 ~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~LaeEvwq~ 794 (937)
T KOG0433|consen 715 RIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPHLAEEVWQH 794 (937)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999999999999999999854 44322 0 123688999999999999999999999
Q ss_pred cC-CCCCccccCCCCCCcccC
Q 002411 833 LG-HSNSLAYESFPKANPDYL 852 (926)
Q Consensus 833 L~-~~~sv~~~~WP~~de~~l 852 (926)
|+ ..+-++...||..++.++
T Consensus 795 lP~~~~~~f~~k~~~l~s~~~ 815 (937)
T KOG0433|consen 795 LPGSHEKIFRLKWEDLHSGLL 815 (937)
T ss_pred CCCCCCcccccCccccchhhc
Confidence 98 344599999999877654
No 27
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-104 Score=905.14 Aligned_cols=644 Identities=28% Similarity=0.470 Sum_probs=509.0
Q ss_pred eecccccHH-HHhhhhhhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHH
Q 002411 43 VRCSVNEIE-EQKQKQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTAT 121 (926)
Q Consensus 43 ~~~~~~~~~-~~~~~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~ 121 (926)
+.+..+++. +.|+....++..|++..+|.+|.++|++.+.|++... ....+.|.++.+||-..|. ||||||++.++.
T Consensus 24 ~~~~~~t~~ge~k~~~~~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~-LHiGHALt~aiq 101 (995)
T KOG0432|consen 24 ASYVPSTAPGEKKDLSGPLPAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGS-LHIGHALTVAIQ 101 (995)
T ss_pred ccccCCCCcchhhccCCcccccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccc-cchhHHHHHHHH
Confidence 444455555 5566667788999999999999999999999987643 2346789998767666676 999999999999
Q ss_pred HHHHHHHHHcCCcccccccccccChHHHHHHHH----hC-CC------------chHHHHHHHHHHHHHHHHcCcccccc
Q 002411 122 DILARLKRMQGYNVLHPMGWDAFGLPAEQYAIE----TG-TH------------PKITTLRNINRFRTQLKSLGFSYDWN 184 (926)
Q Consensus 122 Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~----~g-~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~ 184 (926)
|.++||+||.||.|+|++|+||+|+.+..-+++ .| .. ..+|-+++..++.+||++||.++||+
T Consensus 102 D~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~ 181 (995)
T KOG0432|consen 102 DALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWD 181 (995)
T ss_pred HHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCccccc
Confidence 999999999999999999999999977543333 12 22 12456777788999999999999999
Q ss_pred CccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHH
Q 002411 185 REISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRL 264 (926)
Q Consensus 185 ~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l 264 (926)
|.++|||+...+.|.+.|.+|+++|+|||+.+.||||+...|++||.||++- ++.+.. ++.++.|..+.
T Consensus 182 re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~--ei~~~t---------~l~vpGyd~~V 250 (995)
T KOG0432|consen 182 REAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESV--EIPGRT---------LLSVPGYDTKV 250 (995)
T ss_pred HhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecce--ecCCCc---------eEecCCCCcce
Confidence 9999999999999999999999999999999999999999999999999742 222222 22233332221
Q ss_pred hhccCCCCCcHHHHHHHHhhhccCCCc--eEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccc
Q 002411 265 LDDLDDLDWPESVKEMQRNWIGRSEGA--EMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ 342 (926)
Q Consensus 265 ~~~l~~~~~p~~~~~~~~~~i~~s~~~--~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~ 342 (926)
..|+ -+.|++.+. +..|+|+|||||||+|++||||||+++.
T Consensus 251 -----------------------eFG~L~~faY~v~gs-----~~~i~VaTTRpET~lGDvAvAVhP~D~R--------- 293 (995)
T KOG0432|consen 251 -----------------------EFGVLYSFAYPVEGS-----DEEIVVATTRPETILGDVAVAVHPDDDR--------- 293 (995)
T ss_pred -----------------------eeeeeeEEEEeccCC-----CCeEEEecCCccccccceeEEeCCCCcc---------
Confidence 1232 366777432 3589999999999999999999999963
Q ss_pred hhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCC
Q 002411 343 SQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI 422 (926)
Q Consensus 343 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~L 422 (926)
|++ +.|+.+.||++++.+||+.+.+|++++|||+|.++||||+.||++|++|||
T Consensus 294 ------Yk~--------------------lhGk~~~hP~~~r~lPiI~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L 347 (995)
T KOG0432|consen 294 ------YKH--------------------LHGKFVKHPFTGRKLPIICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNL 347 (995)
T ss_pred ------ccc--------------------ccCceeecCCCCCccceeecccccccccccceEecCCCChhHHHHHHhcCC
Confidence 321 368899999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeE----------------
Q 002411 423 SIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKV---------------- 486 (926)
Q Consensus 423 pi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~---------------- 486 (926)
+.++|++++ |.|++.. .+|+||...+|+++|++-|++.|+-+...
T Consensus 348 ~~~ni~~~d--------------G~l~~~~-----gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVI 408 (995)
T KOG0432|consen 348 EFINIFTDD--------------GLLNNVC-----GEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVI 408 (995)
T ss_pred CceeEEcCC--------------Cceeccc-----hhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcc
Confidence 999999865 5565542 37999999999999999999988632210
Q ss_pred -------------------------------------ee-----ecCCeeeccccccCCccCceEeCCCCcccccCcccc
Q 002411 487 -------------------------------------NY-----KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAEL 524 (926)
Q Consensus 487 -------------------------------------~~-----~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l 524 (926)
+| +.+|||||||.||||.||+|+...... -+++
T Consensus 409 EpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~---~~ee-- 483 (995)
T KOG0432|consen 409 EPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG---RAEE-- 483 (995)
T ss_pred cccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC---CCcc--
Confidence 00 468999999999999999998743211 0000
Q ss_pred CccCCcccccCCCCCCCCCccccccceec------------cc-CCCCCCCcccCCCcCcccccc-chhhhhcCCCCChh
Q 002411 525 PLTLPELDDFTPTGTGEPPLSKAVSWVQT------------TE-HSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKE 590 (926)
Q Consensus 525 ~~~lp~~~~~~~~g~~~~~l~~~~~w~~~------------~~-~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~ 590 (926)
..|+-. .+ |...-.++|++|||||||+|+ |+|..++||..+++
T Consensus 484 -----------------------~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d 540 (995)
T KOG0432|consen 484 -----------------------DYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKD 540 (995)
T ss_pred -----------------------ceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCcccccc
Confidence 123211 11 111235799999999999998 99999999987654
Q ss_pred hcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEec
Q 002411 591 LVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMK 670 (926)
Q Consensus 591 ~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~ 670 (926)
+ +.+||.++.=.|.|+. .||.+.|- +++..++|++||+.|+. ||+|-|
T Consensus 541 ~------~~fyP~sllETG~DIL-------fFWVaRMv-----------------mLg~kLtG~lPF~~V~L--H~mVRD 588 (995)
T KOG0432|consen 541 F------KNFYPLSLLETGHDIL-------FFWVARMV-----------------MLGLKLTGELPFKEVLL--HGLVRD 588 (995)
T ss_pred H------HhcCCchhhhcCchHH-------HHHHHHHH-----------------HhhhhhcCCCCchheee--chhhcc
Confidence 3 3348999999999986 67765432 34556689999999999 799999
Q ss_pred cCCccccccccccccccCCCccCcchhhh------------------------------hc-------CchhhhHHhhhc
Q 002411 671 DNPNIRLIARAHKMSKSRGNVVNPDDVVT------------------------------EY-------GADSLRLYEMFM 713 (926)
Q Consensus 671 ~~~~~~~~~~G~KMSKSkGNvv~p~eii~------------------------------~y-------GaD~lRl~ll~~ 713 (926)
.+ |+|||||+||||||.|+|+ .| |.|||||.|++.
T Consensus 589 a~--------GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~ 660 (995)
T KOG0432|consen 589 AH--------GRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSY 660 (995)
T ss_pred cc--------ccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHc
Confidence 87 9999999999999999997 45 999999999988
Q ss_pred CCcCCCCcCCchhhHHHHHHHHHHHHHH---hcCCCCCCCCCCCcc--cC-CC-CchHHHHHHHHHHHHHHHHHHhcccH
Q 002411 714 GPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGGTV--VN-DE-EPTLEQLCTLHKCIAKVTEEIEGTRF 786 (926)
Q Consensus 714 ~~~~~~~~~~~~~i~~~~r~L~r~~~~~---~~~~~~~~~~~~~~~--~~-~~-~~d~~~l~~l~~~i~~v~~~~e~~~f 786 (926)
+....+++.+...+.++++|+|++||.. +.. +. .+|.+... .. .+ ..|.|++++|+.+++.+.+.|+.|+|
T Consensus 661 ~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~-lg-~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f 738 (995)
T KOG0432|consen 661 TTQGRDINLDVLRVEGYRHFCNKLWNATRFALQR-LG-ENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNF 738 (995)
T ss_pred cccCccccccHHHHhhHHHHHHHHHHHHHHHHHh-cc-cCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 8888999999999999999999999754 332 11 12222111 11 11 26899999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHhc-c---------c----------cchHHHHHHHHHHhhchhhHHHHHHHHHcCC-C----CCcc
Q 002411 787 NTGISAMMEFI-NAAYK-W---------E----------KHPRKIIEPFILLLAPYAPHMSEELWFRLGH-S----NSLA 840 (926)
Q Consensus 787 ~~ai~~l~~f~-~~~~~-~---------~----------~~~~~~l~~l~~lLaP~~P~~aEelw~~L~~-~----~sv~ 840 (926)
..|.+++..|. .++.. | . ..+..+|+..++||+|||||+||||||+|+. . .|+.
T Consensus 739 ~~at~a~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~~~~~si~ 818 (995)
T KOG0432|consen 739 HLATSALYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASIS 818 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCCCCCCceE
Confidence 99999999998 33332 1 1 1234688999999999999999999999963 2 3799
Q ss_pred ccCCCCCCccc
Q 002411 841 YESFPKANPDY 851 (926)
Q Consensus 841 ~~~WP~~de~~ 851 (926)
.++||...+.+
T Consensus 819 va~yP~~~~~~ 829 (995)
T KOG0432|consen 819 VSPYPSSNELW 829 (995)
T ss_pred ecCCCchhccc
Confidence 99999544433
No 28
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-103 Score=863.01 Aligned_cols=676 Identities=23% Similarity=0.384 Sum_probs=533.3
Q ss_pred cccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc
Q 002411 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (926)
++..+||.+-|+++.++|.+.+.|+...+..+++|+|.+.||||++.|. +|.||++.-+|+|++.||..|.||.|-..+
T Consensus 4 ~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGl-PHyGHiLa~TIKDiVtRya~~~G~hVeRRF 82 (1070)
T KOG0434|consen 4 VPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGL-PHYGHILASTIKDIVTRYATQTGHHVERRF 82 (1070)
T ss_pred ccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCC-CccchhhhhhHHHHHHHHhhccccceeeec
Confidence 5678999999999999999999999877767899999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH-hCC----------------CchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 140 GWDAFGLPAEQYAIE-TGT----------------HPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 140 G~D~~Glpie~~a~~-~g~----------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
||||||+|+|....+ .|+ .|+.++-+|...+++...|||-|+|+++-|.|++|.|++.|+|+|
T Consensus 83 GWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvF 162 (1070)
T KOG0434|consen 83 GWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVF 162 (1070)
T ss_pred ccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHH
Confidence 999999999875432 333 366778888999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHH
Q 002411 203 LQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQR 282 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~ 282 (926)
++|+++|++|||.+.++|+..|.|+|||.|..+++.+..
T Consensus 163 keL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~----------------------------------------- 201 (1070)
T KOG0434|consen 163 KELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVP----------------------------------------- 201 (1070)
T ss_pred HHHHhcCceecceeeeccccccCCcccchhcccCcccCC-----------------------------------------
Confidence 999999999999999999999999999999987665432
Q ss_pred hhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHH---HHHHHHHhccchh
Q 002411 283 NWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNI---EEYKNLASRKSDL 359 (926)
Q Consensus 283 ~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~---~~y~~~~~~~~~~ 359 (926)
.+++.|.|++.++. +..+++|||||||||+|.++||||+..|++...++.++..+ ++.-.+.+....-
T Consensus 202 -----DPav~v~F~li~~~----~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k~~~~~ 272 (1070)
T KOG0434|consen 202 -----DPAVFVAFPLIGDP----NVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYKNPKND 272 (1070)
T ss_pred -----CCeEEEEeeccCCc----ceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhcCcccc
Confidence 35678999997543 58999999999999999999999999998766543332111 1111222211111
Q ss_pred hHhHhhhhccccccceEEecCC-------CCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCC-----ceeee
Q 002411 360 ERTELQKEKTGVFSGCYARNPA-------SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDI-----SIHSV 427 (926)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~-------~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~L-----pi~~v 427 (926)
....+++..|..|.|+.|.-++ ......|++++||+.+.|||+||+||+.|+.||.+|..+|+ -..|+
T Consensus 273 ~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cp 352 (1070)
T KOG0434|consen 273 NYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCP 352 (1070)
T ss_pred cHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCc
Confidence 2245778889999999987665 24578999999999999999999999999999999999886 23455
Q ss_pred ecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee----------------------
Q 002411 428 VMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK---------------------- 485 (926)
Q Consensus 428 v~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~---------------------- 485 (926)
||+. | .+..+- .+|.|..+++|.+.|++.+++.|..-..
T Consensus 353 VDe~-G-------------~~Tsev-----~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraV 413 (1070)
T KOG0434|consen 353 VDES-G-------------LFTSEV-----TDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAV 413 (1070)
T ss_pred cccC-C-------------cccccc-----ccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhc
Confidence 5544 2 222221 2577777788888888888777653211
Q ss_pred --------------------E-------------ee--ecCCeeeccccccCCccCceEeCCCCcccccCc-cccCccCC
Q 002411 486 --------------------V-------------NY--KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHE-AELPLTLP 529 (926)
Q Consensus 486 --------------------~-------------~~--~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~-~~l~~~lp 529 (926)
+ || +.|||.|||+||||||||+|..++-.+++++.. .+|.
T Consensus 414 PsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLE---- 489 (1070)
T KOG0434|consen 414 PSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELE---- 489 (1070)
T ss_pred cHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHH----
Confidence 0 11 468999999999999999999987666776643 2221
Q ss_pred cccccCCCCCCCCCccc-cccceecccCCCCC-CCcccCCCcCccccc-cchhhhhcCCCCChhhcchhhhhcCCCceee
Q 002411 530 ELDDFTPTGTGEPPLSK-AVSWVQTTEHSSGK-PARRETSTMPQWAGS-CWYYLRFMDPKNSKELVDKTKERYWSPVDVY 606 (926)
Q Consensus 530 ~~~~~~~~g~~~~~l~~-~~~w~~~~~~~~g~-~~~re~d~mD~WfdS-sw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~ 606 (926)
+..|.....+.+ ..+-+ +...+||+ .++|..+|+|+||.| |++|+.-++|..+.+.|+.. +|+|+.
T Consensus 490 -----eLSG~kItDlHRe~iD~i-tIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFenk~~fe~~-----fPadFI 558 (1070)
T KOG0434|consen 490 -----ELSGVKITDLHRESIDHI-TIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFENKEEFEEN-----FPADFI 558 (1070)
T ss_pred -----HhcCCcchhhhhhhcCce-ecccCCCCcceehhhhHhhhhhccCCCcchhhcCCccchHHHhhc-----CchHhh
Confidence 012221111211 11212 23345554 689999999999988 59999999999988777654 599999
Q ss_pred ecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccc
Q 002411 607 VGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSK 686 (926)
Q Consensus 607 v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSK 686 (926)
.+|.||. |+|+ |++. .+|.++.++.||++|++ +|.||.+| |+||||
T Consensus 559 aEGlDQT-------RGWF---YTL~--------------VlsT~LF~kppfkNvIv--nGlVLAeD--------G~KMSK 604 (1070)
T KOG0434|consen 559 AEGLDQT-------RGWF---YTLL--------------VLSTALFGKPPFKNVIV--NGLVLAED--------GKKMSK 604 (1070)
T ss_pred hhccccc-------cchh---hHHH--------------HHHHHHcCCCcchheeE--eeeEEecc--------cHHHhh
Confidence 9999997 9996 3332 35667789999999998 89999998 999999
Q ss_pred cCCCccCcchhhhhcCchhhhHHhhhcCCc-CCCCcCCchhhHHHHHHHH----HHHHHHhcCCC--C---CCCCC-CCc
Q 002411 687 SRGNVVNPDDVVTEYGADSLRLYEMFMGPF-RDSKTWNTSGIEGVHRFLG----RMWRLIVGSSL--P---DGTFK-GGT 755 (926)
Q Consensus 687 SkGNvv~p~eii~~yGaD~lRl~ll~~~~~-~~~~~~~~~~i~~~~r~L~----r~~~~~~~~~~--~---~~~~~-~~~ 755 (926)
|+.|.-+|..+|++||||+|||||+.+.-. ...+.|.++++.++.+-+- |-++|++.+.. . ...|. +..
T Consensus 605 rlkNYPdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~ 684 (1070)
T KOG0434|consen 605 RLKNYPDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDS 684 (1070)
T ss_pred hhhcCCCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccc
Confidence 999999999999999999999999965443 4677899999998765321 34456544321 1 11121 111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc---------------------hHHHHHHH
Q 002411 756 VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH---------------------PRKIIEPF 814 (926)
Q Consensus 756 ~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~---------------------~~~~l~~l 814 (926)
....+..|+|+++.++.++.-+++.|+.|++.+++-.+..|+..+.+|+.+ +-++|-.+
T Consensus 685 ~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~ 764 (1070)
T KOG0434|consen 685 VTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTL 764 (1070)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 223344699999999999999999999999999999999999999888632 12678899
Q ss_pred HHHhhchhhHHHHHHHHHcCC----------CCCccccCCCCCCcccCCC
Q 002411 815 ILLLAPYAPHMSEELWFRLGH----------SNSLAYESFPKANPDYLKD 854 (926)
Q Consensus 815 ~~lLaP~~P~~aEelw~~L~~----------~~sv~~~~WP~~de~~l~~ 854 (926)
+++|+||+||+||.+||.|.. ..|||.+.+|.+.+..+++
T Consensus 765 ~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de 814 (1070)
T KOG0434|consen 765 VRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDE 814 (1070)
T ss_pred HHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccc
Confidence 999999999999999999842 3689999999998877654
No 29
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.3e-74 Score=655.13 Aligned_cols=362 Identities=30% Similarity=0.523 Sum_probs=295.7
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh---------CCC------
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET---------GTH------ 158 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~---------g~~------ 158 (926)
++|+|+++|||+||. |||||+++++++|+++||+||+|++|++++|||+||+|||.+|++. +..
T Consensus 1 ~~f~i~~~pPy~nG~-lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGS-LHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCc-chHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHH
Confidence 589999999999998 9999999999999999999999999999999999999999998764 233
Q ss_pred -chHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCc
Q 002411 159 -PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV 237 (926)
Q Consensus 159 -~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~ 237 (926)
|+++++++++.|++++++||+++||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev---- 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV---- 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----
Confidence 346889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCeEEeeccccchhhhhhHHHHhhccCC--CC-CcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeec
Q 002411 238 SERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD-WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTT 314 (926)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~--~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TT 314 (926)
|++||.+++.+..+||||++++|+++|++.+++ .. +|++
T Consensus 156 c~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~-------------------------------------- 197 (382)
T cd00817 156 CSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPER-------------------------------------- 197 (382)
T ss_pred cccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChH--------------------------------------
Confidence 899999999999999999999999998876542 11 1211
Q ss_pred CCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcc
Q 002411 315 RPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYV 394 (926)
Q Consensus 315 rP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V 394 (926)
T Consensus 198 -------------------------------------------------------------------------------- 197 (382)
T cd00817 198 -------------------------------------------------------------------------------- 197 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHH
Q 002411 395 LGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIE 474 (926)
Q Consensus 395 ~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~ 474 (926)
++..+.+
T Consensus 198 -------------------------------------------------------------------------~~~~~~~ 204 (382)
T cd00817 198 -------------------------------------------------------------------------MEKRYEN 204 (382)
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1223334
Q ss_pred HHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecc
Q 002411 475 WAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTT 554 (926)
Q Consensus 475 ~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~ 554 (926)
|++. ++||||||||+||+|||+|+|++|++.+..+..+++.... . ....
T Consensus 205 ~l~~-----------l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~------------------~--~~~~ 253 (382)
T cd00817 205 WLEN-----------IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKA------------------A--PEAC 253 (382)
T ss_pred HHhh-----------CccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHh------------------c--cccc
Confidence 4432 6899999999999999999999888766444433322100 0 1122
Q ss_pred cCCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeec
Q 002411 555 EHSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKD 633 (926)
Q Consensus 555 ~~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~ 633 (926)
|+.+|..++|++|||||||||+ +|+....+|.+.+ . .++|+|+|+|++|+||+ |||+... +
T Consensus 254 ~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~-----~-~~~~~p~d~~~~G~D~~-------~~h~~~~--l--- 315 (382)
T cd00817 254 VPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETK-----D-LKKFYPTSLLVTGHDII-------FFWVARM--I--- 315 (382)
T ss_pred cCCCccCeeECCceeeeeecCCCcHHHHhCCCCcch-----h-HhhcCCCCeeeeecCcC-------chHHHHH--H---
Confidence 4434567999999999999998 5666566665432 1 24567999999999998 5554321 0
Q ss_pred CCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhc
Q 002411 634 VDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 713 (926)
Q Consensus 634 ~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~ 713 (926)
+++.++.+..|++.+++ ||++++.+ |+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 316 ------------~~~~~~~g~~p~~~v~~--hg~v~~~~--------g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~ 373 (382)
T cd00817 316 ------------MRGLKLTGKLPFKEVYL--HGLVRDED--------GRKMSKSLGNVIDPLDVIDGYGADALRFTLASA 373 (382)
T ss_pred ------------HHHHHhhCCCchHHeEe--eeeEECCC--------CCCccccCCCCCCHHHHHHhcCcHHHHHHHHhC
Confidence 22333456678888888 79999765 999999999999999999999999999999988
Q ss_pred CCcCCCCcC
Q 002411 714 GPFRDSKTW 722 (926)
Q Consensus 714 ~~~~~~~~~ 722 (926)
++..+|.+|
T Consensus 374 ~~~~~D~~f 382 (382)
T cd00817 374 ATQGRDINL 382 (382)
T ss_pred CCccCCCCC
Confidence 888777654
No 30
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-72 Score=680.59 Aligned_cols=443 Identities=26% Similarity=0.447 Sum_probs=357.1
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++|+|+.++|||||. +||||+++++++|+++||+||+|++|+|++|+|+||+||+.+|.+.|.+|+++++++.+.|++
T Consensus 3 ~~~~~it~~~py~ng~-~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~ 81 (648)
T PRK12267 3 KKTFYITTPIYYPNGK-PHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKE 81 (648)
T ss_pred CCCEEEeeCCCCCCCC-cccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3589999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhcc-CccccCCCCeEEeecc
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMR 251 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~-~~~~~~~~~~~~~~~~ 251 (926)
+|++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|++.|++.++++ +.|++||.+++.+..+
T Consensus 82 ~l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~ 159 (648)
T PRK12267 82 LWKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEE 159 (648)
T ss_pred HHHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecc
Confidence 9999999888 889999999999999999999999999999999999999999999999988 8999999999999999
Q ss_pred ccchhhhhhHHHHhhccCCCC---CcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEEC
Q 002411 252 QWMLKITEYADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVA 328 (926)
Q Consensus 252 ~~~l~l~~y~~~l~~~l~~~~---~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~ 328 (926)
||||+|++|+++|.+++++.. ||+..
T Consensus 160 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~--------------------------------------------------- 188 (648)
T PRK12267 160 SYFFRMSKYQDRLLEYYEENPDFIQPESR--------------------------------------------------- 188 (648)
T ss_pred eEEEEcHHHHHHHHHHHhhCCcccCCHHH---------------------------------------------------
Confidence 999999999999987654210 12111
Q ss_pred CCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCC
Q 002411 329 PEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPA 408 (926)
Q Consensus 329 p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pa 408 (926)
T Consensus 189 -------------------------------------------------------------------------------- 188 (648)
T PRK12267 189 -------------------------------------------------------------------------------- 188 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHH-HHHHHcCCCceeEe
Q 002411 409 HDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVI-EWAEKTGNGKKKVN 487 (926)
Q Consensus 409 h~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~-~~l~~~g~~~~~~~ 487 (926)
...+. .|+.+
T Consensus 189 ------------------------------------------------------------~~~~~~~~l~~--------- 199 (648)
T PRK12267 189 ------------------------------------------------------------KNEMINNFIKP--------- 199 (648)
T ss_pred ------------------------------------------------------------HHHHHHHHhhC---------
Confidence 11222 33321
Q ss_pred eecCCeeeccccc-cCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccC
Q 002411 488 YKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRET 566 (926)
Q Consensus 488 ~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~ 566 (926)
.++||||||||. ||+|||. +. .
T Consensus 200 -~l~D~~ISR~~~~WGipvP~----~~----------------------------------------------------~ 222 (648)
T PRK12267 200 -GLEDLSISRTSFDWGIPVPF----DP----------------------------------------------------K 222 (648)
T ss_pred -CCCCcccCCCCCCcceECCC----CC----------------------------------------------------C
Confidence 268999999984 9999995 10 1
Q ss_pred CCcCccccccchhhhh-cCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccc
Q 002411 567 STMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTD 645 (926)
Q Consensus 567 d~mD~WfdSsw~~l~~-~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~ 645 (926)
.||||||||+..|+.. .+|..+. ..+.++| |+|+|+.|+|++.+|.+| |..++.
T Consensus 223 ~v~yVWfDA~~~y~s~~~~~~~~~----~~~~~~w-p~~~~~~GkDii~fH~i~---wpa~l~----------------- 277 (648)
T PRK12267 223 HVVYVWIDALLNYITALGYGSDDD----ELFKKFW-PADVHLVGKDILRFHAIY---WPIMLM----------------- 277 (648)
T ss_pred CEEEEcccchHHHHHHcCCCCCCc----hHHHhhc-ccceEEEeeeecchhHHH---HHHHHH-----------------
Confidence 3889999998666553 4443221 1234565 999999999999999764 543211
Q ss_pred ccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCch
Q 002411 646 TLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS 725 (926)
Q Consensus 646 ~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~ 725 (926)
+ .+..|+++|++ |||++++ |+|||||+||+|+|.+++++||+|++|||++..++..+|.+|+++
T Consensus 278 --~---~~~~~p~~v~~--hg~l~~e---------g~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~ 341 (648)
T PRK12267 278 --A---LGLPLPKKVFA--HGWWLMK---------DGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPE 341 (648)
T ss_pred --h---CCCCCCcEEEe--cceEEEC---------CceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHH
Confidence 1 13567888887 8999987 899999999999999999999999999999988888999999998
Q ss_pred hhHHHHH--HHHHHHHHHhcCCCCCCCCCCCccc---CCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 002411 726 GIEGVHR--FLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAA 800 (926)
Q Consensus 726 ~i~~~~r--~L~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~ 800 (926)
.+....+ +.++++|++.........+..+..+ .....|.+++++++++++++.++|++|+|++|++.+++|++..
T Consensus 342 ~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~~~ 421 (648)
T PRK12267 342 ALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLISRA 421 (648)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 8865432 3333343331100000000111111 1134578899999999999999999999999999999999877
Q ss_pred hcccc----------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 801 YKWEK----------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 801 ~~~~~----------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
|.|.+ ...++++.+++||+|||||+||+||++||.+
T Consensus 422 N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~~ 479 (648)
T PRK12267 422 NKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGLE 479 (648)
T ss_pred HHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCCC
Confidence 65421 0125678888999999999999999999863
No 31
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.2e-72 Score=665.67 Aligned_cols=457 Identities=23% Similarity=0.409 Sum_probs=351.8
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhh-hHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGY-TATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~-~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
++|+|+.+|||+||. |||||++++ +++|+++||+||+|++|.+++|+|+||+||+.+|.+.|.+|.++++++.+.|++
T Consensus 3 ~~~~i~~~~py~ng~-~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 81 (556)
T PRK12268 3 MRILITSAWPYANGP-LHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKE 81 (556)
T ss_pred CcEEEecCCCCCCCC-ccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 579999999999998 999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhc------------------
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV------------------ 234 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~------------------ 234 (926)
++++|||++| .+++|++|.|.+.++++|.+|+++|+||++.++++|||.|+|+|++..|.
T Consensus 82 ~~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 82 DFKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDN 159 (556)
T ss_pred HHHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhh
Confidence 9999999766 78999999999999999999999999999999999999999999988764
Q ss_pred -----------cCccccCCCCeEEeeccccchhhhhhHHHHhhccCCC-CCcHHHHHHHHhhhccCCCceEEEEeecCCC
Q 002411 235 -----------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302 (926)
Q Consensus 235 -----------~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~ 302 (926)
++.|++||.+++.+..+||||+++++++.|++.++.. .||+..++...+
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~------------------- 220 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLN------------------- 220 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHH-------------------
Confidence 2355667778899999999999999999988876532 244443322222
Q ss_pred CccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCC
Q 002411 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS 382 (926)
Q Consensus 303 ~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~ 382 (926)
T Consensus 221 -------------------------------------------------------------------------------- 220 (556)
T PRK12268 221 -------------------------------------------------------------------------------- 220 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCC
Q 002411 383 GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING 462 (926)
Q Consensus 383 ~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~g 462 (926)
T Consensus 221 -------------------------------------------------------------------------------- 220 (556)
T PRK12268 221 -------------------------------------------------------------------------------- 220 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCC
Q 002411 463 LSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEP 542 (926)
Q Consensus 463 l~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~ 542 (926)
|+.+ +++||||||||+||+||| |.+.+ +
T Consensus 221 ------------~l~~----------~l~Dw~ISR~~~WGipiP-~~~~~-~---------------------------- 248 (556)
T PRK12268 221 ------------WLKE----------GLKPRAITRDLDWGIPVP-WPGFE-G---------------------------- 248 (556)
T ss_pred ------------HHhC----------CCCCcCceeeCCCCeeCC-CCCCC-C----------------------------
Confidence 2211 368999999999999999 55421 1
Q ss_pred CccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCC---CceeeecccchhhhhHHH
Q 002411 543 PLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWS---PVDVYVGGAEHAVLHLLY 619 (926)
Q Consensus 543 ~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~---PvDl~v~G~D~~~~HLly 619 (926)
.++++|||+.+.|+..........--......+|. |.++++.|+|++.+|.+|
T Consensus 249 ------------------------~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~ 304 (556)
T PRK12268 249 ------------------------KVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSII 304 (556)
T ss_pred ------------------------cEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHH
Confidence 14567777665444221100000000011223442 678999999999888543
Q ss_pred hhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhh
Q 002411 620 ARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT 699 (926)
Q Consensus 620 ~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~ 699 (926)
|..++ .+.......| +.+++ |||++.+ |+|||||+||+|+|.++|+
T Consensus 305 ---~p~~l-------------------~~~~~~~~~P-~~v~~--~G~v~~~---------G~KMSKS~GN~I~p~dli~ 350 (556)
T PRK12268 305 ---WPAML-------------------LGSGEPLKLP-DEIVS--SEYLTLE---------GGKFSKSRGWGIWVDDALE 350 (556)
T ss_pred ---HHHHH-------------------HhcCCCCCCC-CEeec--cCCEEEC---------CeeeccCCCcccCHHHHHH
Confidence 32211 0011113455 46665 7999875 8999999999999999999
Q ss_pred hcCchhhhHHhhhcCCcCCCCcCCchhhHH---------HHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHH
Q 002411 700 EYGADSLRLYEMFMGPFRDSKTWNTSGIEG---------VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTL 770 (926)
Q Consensus 700 ~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~---------~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l 770 (926)
+||+|++|||+++.++..++.+|+++.+.. ..++++|+.+++.... +... + .......|.++++++
T Consensus 351 ~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~--~~~~-~--~~~~~~~d~~ll~~l 425 (556)
T PRK12268 351 RYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYF--GGIV-P--PGELGDEDRELIAEA 425 (556)
T ss_pred HcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhc--CCcC-C--CCcCCcccHHHHHHH
Confidence 999999999999988888999999887643 2233444444442211 0111 0 011245689999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc--------------------hHHHHHHHHHHhhchhhHHHHHHH
Q 002411 771 HKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH--------------------PRKIIEPFILLLAPYAPHMSEELW 830 (926)
Q Consensus 771 ~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~--------------------~~~~l~~l~~lLaP~~P~~aEelw 830 (926)
++++++++++|++|+|+.|++.+++|++..+.|... ..++++.+++||+|||||+|||||
T Consensus 426 ~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~ 505 (556)
T PRK12268 426 EALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIW 505 (556)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999999999999999999999999999877664210 124678899999999999999999
Q ss_pred HHcCCCCCccccCCCCCC
Q 002411 831 FRLGHSNSLAYESFPKAN 848 (926)
Q Consensus 831 ~~L~~~~sv~~~~WP~~d 848 (926)
++||. +++..+.||...
T Consensus 506 ~~Lg~-~~~~~~~w~~~~ 522 (556)
T PRK12268 506 EMLGG-ENIEKLTWESLK 522 (556)
T ss_pred HHhCC-CCCcccchhhhc
Confidence 99987 467788999753
No 32
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-72 Score=628.40 Aligned_cols=665 Identities=23% Similarity=0.380 Sum_probs=473.4
Q ss_pred chhhhHHHHHHHHhCCCCCCCC--CCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccc
Q 002411 66 FHEIEPKWQSYWENNRTFRTPD--EIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA 143 (926)
Q Consensus 66 ~~~iE~~~~~~W~~~~~f~~~~--~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~ 143 (926)
+.+||+++|++|+++++|+.+. +.+++++||+++-++||.||. ||+||+++....|+.+-|+||+|++|+||+|++|
T Consensus 14 L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~-LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHC 92 (1080)
T KOG0437|consen 14 LLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGR-LHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHC 92 (1080)
T ss_pred HHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCce-eeccceeehhhhHHHHHHHHhcCceEEeeccccc
Confidence 6799999999999999998754 345678999999999999997 9999999999999999999999999999999999
Q ss_pred cChHHHHHHHHh-------CCCch------------------------------HH------------------HHHHHH
Q 002411 144 FGLPAEQYAIET-------GTHPK------------------------------IT------------------TLRNIN 168 (926)
Q Consensus 144 ~Glpie~~a~~~-------g~~~~------------------------------~~------------------~~~~~~ 168 (926)
.|+||...|.+. |..|. .. .++.|.
T Consensus 93 TGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~ 172 (1080)
T KOG0437|consen 93 TGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIK 172 (1080)
T ss_pred CCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhh
Confidence 999998777542 32210 00 111121
Q ss_pred HH--------------HHHHHHcCccccccCccccCC--hhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchh
Q 002411 169 RF--------------RTQLKSLGFSYDWNREISTIE--PAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEE 232 (926)
Q Consensus 169 ~~--------------~~~l~~lgi~~Dw~~~~~T~d--~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~e 232 (926)
.| .++++++|..+||+|.+.|+| |.|..+|+|+|.+|.+.|.|..|++...|||.+|+++.|++
T Consensus 173 ~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHD 252 (1080)
T KOG0437|consen 173 KFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHD 252 (1080)
T ss_pred cccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccccc
Confidence 11 479999999999999999998 99999999999999999999999999999999999999999
Q ss_pred hccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecC-----CC-Cccc
Q 002411 233 VVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS-----DG-QERD 306 (926)
Q Consensus 233 v~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~-----~~-~~~~ 306 (926)
...|. +-.|.+.. .++..+.+. ++ .+.+
T Consensus 253 R~sGE---gV~Pqeyt-------------------------------------------liKle~le~~p~~l~~~~~~~ 286 (1080)
T KOG0437|consen 253 RASGE---GVGPQEYT-------------------------------------------LIKLEVLEPFPKALSSLKDLR 286 (1080)
T ss_pred cccCC---CCCcceEE-------------------------------------------EEEEEecccchhhccccccce
Confidence 86442 11222211 122222111 00 1124
Q ss_pred eeEEEeecCCccccCCcEEEECCCCccchhcccccc-------h-hHHHHHHHHHhccchhhHhHhhhhccccccceEEe
Q 002411 307 IKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ-------S-QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (926)
Q Consensus 307 ~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~-------~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (926)
.+++++|.||+|++|.|+++|+|+..|.......+. + ...-.|+...+..+.. ..+.+..|..+.|..+.
T Consensus 287 v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~--~~~~~i~G~~~iGa~l~ 364 (1080)
T KOG0437|consen 287 VYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVV--SCLVTITGYDLIGAPLS 364 (1080)
T ss_pred eeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcc--cceeeecchhhcCCccc
Confidence 899999999999999999999999999765443211 1 1111233322221111 12334556678999999
Q ss_pred cCCCC-CcccEEecCcccCCCCCCceeecCCCChhhHHHHHH-------cCC----------ceeeeecCCC--------
Q 002411 379 NPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-------FDI----------SIHSVVMPDD-------- 432 (926)
Q Consensus 379 ~P~~~-~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k-------~~L----------pi~~vv~~~~-------- 432 (926)
.|++- ..+.+++...|..++|||+|.+||+..||||...+. ||| ||+.+-.-.|
T Consensus 365 aPlsv~~~vy~LPMlTi~~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~ 444 (1080)
T KOG0437|consen 365 APLSVYERVYALPMLTILATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCD 444 (1080)
T ss_pred CcchhhheeeeccceeeeccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHH
Confidence 99864 567888899999999999999999999999977632 443 3443311000
Q ss_pred ---------C--CCccccccccc---CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee-------------
Q 002411 433 ---------E--SSSQSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------- 485 (926)
Q Consensus 433 ---------~--~~~~~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~------------- 485 (926)
. ..++....|.+ +|+|+-+ .+.|.++.++.+.|...|.+.|.....
T Consensus 445 ~lKiqs~~dk~klaeaK~~~y~e~fy~g~mlig-------~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGd 517 (1080)
T KOG0437|consen 445 ELKIQSPNDKKKLAEAKKLAYLEGFYEGTMLIG-------KYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGD 517 (1080)
T ss_pred HHhccCchhHHHHHHhhHHHHHHhhhcceEEEe-------ccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCC
Confidence 0 00112233333 4777654 378999999999888888877764210
Q ss_pred -----------Eee--------------------------------ecCCeeeccccccCCccCceEeCCCCcccccCcc
Q 002411 486 -----------VNY--------------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEA 522 (926)
Q Consensus 486 -----------~~~--------------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~ 522 (926)
++| +|..|.|||.-+.||.||| ++.--+.+++++
T Consensus 518 eCiVAL~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPW---D~qyLvESLSDS 594 (1080)
T KOG0437|consen 518 ECIVALCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPW---DEQYLVESLSDS 594 (1080)
T ss_pred ceEEEeccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCC---cHHHHHHhcchh
Confidence 111 4679999999999999999 454566788999
Q ss_pred ccCccCCcccccC---CCCCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCC--CC---hhhcch
Q 002411 523 ELPLTLPELDDFT---PTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPK--NS---KELVDK 594 (926)
Q Consensus 523 ~l~~~lp~~~~~~---~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~--~~---~~~~~~ 594 (926)
++++..+++.++. ..|....||. ... |+..|..|.|+....|. +. .+.+++
T Consensus 595 TIYmAyYTvaHll~~d~~g~~~~plg--------------i~~-------~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~ 653 (1080)
T KOG0437|consen 595 TIYMAYYTVAHLLHRDLYGKVEGPLG--------------IKP-------DQMTDEVWDYVFLNEPYPKNTAIPEEALSN 653 (1080)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccCC--------------CCh-------hhcCHHHHHHhhccCCCCcCCCccHHHHHH
Confidence 9998877776542 2233222221 111 23356678887665433 22 223333
Q ss_pred hh--hhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccC
Q 002411 595 TK--ERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDN 672 (926)
Q Consensus 595 ~~--~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~ 672 (926)
.+ .+||||+|++++|+|++.+||.|+.|.|.+++.- ..+|. -+.. ||+++.+
T Consensus 654 lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~----------------------k~WPk-gira--NGHLmLN- 707 (1080)
T KOG0437|consen 654 LRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPE----------------------KKWPK-GIRA--NGHLMLN- 707 (1080)
T ss_pred HHHhhhcccceeeeeccccccccceeEeeeehhhhccc----------------------ccCcc-ceee--CceEEec-
Confidence 22 3899999999999999999999999998775531 23443 2333 7888876
Q ss_pred CccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHh---cCCCCCC
Q 002411 673 PNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIV---GSSLPDG 749 (926)
Q Consensus 673 ~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~---~~~~~~~ 749 (926)
++|||||.||+.+.++.|++||||+.|+.|+.++..-+|.+|.+..... ++-|++..+. ...-...
T Consensus 708 --------sEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s 776 (1080)
T KOG0437|consen 708 --------SEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANANA---AILRLYTYVEWIEEMCENRS 776 (1080)
T ss_pred --------chhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHH
Confidence 7999999999999999999999999999999988888888887554433 3444443321 0000000
Q ss_pred CCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhcccc---------chHHHHHHHHHHhh
Q 002411 750 TFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGIS-AMMEFINAAYKWEK---------HPRKIIEPFILLLA 819 (926)
Q Consensus 750 ~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~-~l~~f~~~~~~~~~---------~~~~~l~~l~~lLa 819 (926)
....+. .....|+-+.+++|.+++..+++|+...|..|+. .+++|...-..|.. .....+++.++||+
T Consensus 777 ~LrtGp--~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel~g~~mh~dLv~r~ietqtlLLa 854 (1080)
T KOG0437|consen 777 SLRTGP--ASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYRELCGEGMHRDLVFRFIETQTLLLA 854 (1080)
T ss_pred hhccCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 111111 1123466678899999999999999999999995 68888765443321 12356889999999
Q ss_pred chhhHHHHHHHHHcCCCCCccccCCCCCCc
Q 002411 820 PYAPHMSEELWFRLGHSNSLAYESFPKANP 849 (926)
Q Consensus 820 P~~P~~aEelw~~L~~~~sv~~~~WP~~de 849 (926)
||+||+||.||+.++.+++....+||.+++
T Consensus 855 Pi~Ph~aeyiw~~~~~~~~~v~~~wP~~s~ 884 (1080)
T KOG0437|consen 855 PICPHLAEYIWRTVLKKNFSVNVGWPFVSP 884 (1080)
T ss_pred ccchHHHHHHHHHhccCCceeecCCCCCCC
Confidence 999999999999987766555569998875
No 33
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.5e-70 Score=646.33 Aligned_cols=443 Identities=21% Similarity=0.340 Sum_probs=352.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
.+++|+|+++||||||. |||||+++++++|+++||+||+|++|+|++|||+||+||+.+|.+.|.+|.++|+++.+.++
T Consensus 67 ~~~~~~ittp~pY~NG~-~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~ 145 (616)
T PLN02224 67 EADTFVLTTPLYYVNAP-PHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYR 145 (616)
T ss_pred CCCeEEEeCCCCCCCCC-CchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46789999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhcc-CccccCCCCeEEeec
Q 002411 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPM 250 (926)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~-~~~~~~~~~~~~~~~ 250 (926)
+++++|||++| ++++|++|.|.+.|+++|.+|+++|+||++.++++|||+|++.+++.|+++ ++|..||.+++.+++
T Consensus 146 ~~~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e 223 (616)
T PLN02224 146 TLWKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKE 223 (616)
T ss_pred HHHHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEec
Confidence 99999999666 999999999999999999999999999999999999999999999999975 579999999999999
Q ss_pred cccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCC
Q 002411 251 RQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPE 330 (926)
Q Consensus 251 ~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~ 330 (926)
++|||+|++|++.|++++++.. .. +.|
T Consensus 224 ~~~ff~Ls~~~~~L~~~~~~~~--------------------------------------------~~--------~~p- 250 (616)
T PLN02224 224 DNYFFALSKYQKPLEDILAQNP--------------------------------------------RF--------VQP- 250 (616)
T ss_pred ceEEEEhHHHHHHHHHHHHhCC--------------------------------------------Cc--------cCC-
Confidence 9999999999999887653210 00 000
Q ss_pred CccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCC
Q 002411 331 HPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHD 410 (926)
Q Consensus 331 ~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~ 410 (926)
T Consensus 251 -------------------------------------------------------------------------------- 250 (616)
T PLN02224 251 -------------------------------------------------------------------------------- 250 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeec
Q 002411 411 TRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490 (926)
Q Consensus 411 ~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l 490 (926)
......+.+||.+ .|
T Consensus 251 -------------------------------------------------------~~~~~~~~~~l~~----------gL 265 (616)
T PLN02224 251 -------------------------------------------------------SYRLNEVQSWIKS----------GL 265 (616)
T ss_pred -------------------------------------------------------HHHHHHHHHHHhc----------CC
Confidence 0011223344432 37
Q ss_pred CCeeecccc-ccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCc
Q 002411 491 RDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTM 569 (926)
Q Consensus 491 ~DW~ISRQR-~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~m 569 (926)
+||||||.+ .||+|+|. +.+ .|+
T Consensus 266 ~d~~ISR~~~~WGIpvP~----~~~----------------------------------------------------~vi 289 (616)
T PLN02224 266 RDFSISRALVDWGIPVPD----DDK----------------------------------------------------QTI 289 (616)
T ss_pred CCccccCCCCCCceECCC----CCC----------------------------------------------------cEE
Confidence 899999997 69999994 111 267
Q ss_pred CccccccchhhhhcC-CCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccc
Q 002411 570 PQWAGSCWYYLRFMD-PKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLG 648 (926)
Q Consensus 570 D~WfdSsw~~l~~~~-p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s 648 (926)
.||||....|+.... +..... .+ ....+|+|.|+|+.|+|++.+|. .+|++++. +
T Consensus 290 YVWfDAl~~Yls~~~~~~~~~~-~~-~~~~~~w~~~v~~iGKDii~fH~---i~wpa~l~-------------------~ 345 (616)
T PLN02224 290 YVWFDALLGYISALTEDNKQQN-LE-TAVSFGWPASLHLIGKDILRFHA---VYWPAMLM-------------------S 345 (616)
T ss_pred EEehhhHHHHHHHhcccccccc-cc-hhhccCCCcceEEEeecccccHH---HHHHHHHH-------------------H
Confidence 899999988877432 211100 00 01144569999999999999985 45665421 1
Q ss_pred cccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhH
Q 002411 649 EYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIE 728 (926)
Q Consensus 649 ~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~ 728 (926)
.+....+.+++ |||++.+ |+|||||+||+|+|.+++++||+|++||||++.++..++.+|+++.+.
T Consensus 346 ---~g~~~P~~i~~--~g~l~~e---------G~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~ 411 (616)
T PLN02224 346 ---AGLELPKMVFG--HGFLTKD---------GMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFI 411 (616)
T ss_pred ---CCCCCCcEEEe--cccEecC---------CccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHH
Confidence 12233466766 7897765 899999999999999999999999999999999999999999988765
Q ss_pred HHH---------HHHHHHHHHHhcCCCCCCCCCCCcccC---CCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002411 729 GVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVN---DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEF 796 (926)
Q Consensus 729 ~~~---------r~L~r~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f 796 (926)
... ++++|++.++.... ++..+. ....+.+++++++++++++.++|++|+|++|++.+|+|
T Consensus 412 ~~~NseLan~lgNll~R~l~~~~k~~-------~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el 484 (616)
T PLN02224 412 KIVNAHLANTIGNLLNRTLGLLKKNC-------ESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEI 484 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 432 34444444432211 111111 12336778999999999999999999999999999999
Q ss_pred HHHHhcccc-----------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 797 INAAYKWEK-----------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 797 ~~~~~~~~~-----------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
++..|+|.. ...++++.+++||+|||||+||+||++||.+
T Consensus 485 ~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~~ 547 (616)
T PLN02224 485 GNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGYS 547 (616)
T ss_pred HHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCCC
Confidence 988876421 0135778999999999999999999999854
No 34
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.4e-69 Score=640.86 Aligned_cols=438 Identities=23% Similarity=0.386 Sum_probs=349.0
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
|+|+.+||||||. |||||+++++.+|+++||+||+|++|++++|+|+||+||+.+|.++|++|+++++++.+.|+++++
T Consensus 1 ~~it~~~P~~ng~-lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 79 (530)
T TIGR00398 1 ILITTALPYANGK-PHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWK 79 (530)
T ss_pred CEEecCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhh----------------------
Q 002411 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV---------------------- 233 (926)
Q Consensus 176 ~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev---------------------- 233 (926)
+|||++| .++.|+++.|.+.++++|.+|+++|+||++.++++||+.|+|+|++.+|
T Consensus 80 ~LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~ 157 (530)
T TIGR00398 80 WLNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGR 157 (530)
T ss_pred HhCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccc
Confidence 9999887 6788999999999999999999999999999999999999999999854
Q ss_pred -------ccCccccCCCCeEEeeccccchhhhhhHHHHhhccCC---C-CCcHHHHHHHHhhhccCCCceEEEEeecCCC
Q 002411 234 -------VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD---L-DWPESVKEMQRNWIGRSEGAEMDFRVLDSDG 302 (926)
Q Consensus 234 -------~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~---~-~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~ 302 (926)
+++.|++||.+++.++++||||++++|+++|++++++ . .||+.++++..
T Consensus 158 ~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 217 (530)
T TIGR00398 158 HLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQ-------------------- 217 (530)
T ss_pred cCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHHH--------------------
Confidence 4455778899999999999999999999999887642 1 13322222211
Q ss_pred CccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCC
Q 002411 303 QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPAS 382 (926)
Q Consensus 303 ~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~ 382 (926)
T Consensus 218 -------------------------------------------------------------------------------- 217 (530)
T TIGR00398 218 -------------------------------------------------------------------------------- 217 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCC
Q 002411 383 GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDING 462 (926)
Q Consensus 383 ~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~g 462 (926)
T Consensus 218 -------------------------------------------------------------------------------- 217 (530)
T TIGR00398 218 -------------------------------------------------------------------------------- 217 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccc-cCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCC
Q 002411 463 LSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGE 541 (926)
Q Consensus 463 l~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~ 541 (926)
+|+.. .++|||||||+. ||+|||.| ++
T Consensus 218 -----------~~l~~----------~l~d~~iSR~~~~WGipvP~~----~~--------------------------- 245 (530)
T TIGR00398 218 -----------NWLKG----------GLKDLAITRDLVYWGIPVPND----PN--------------------------- 245 (530)
T ss_pred -----------HHHhC----------CCCCccccCcCCCCCeeCCCC----CC---------------------------
Confidence 22221 268999999999 99999974 11
Q ss_pred CCccccccceecccCCCCCCCcccCCCcCccccccchhhhhc-CCCCChhhcchhhhhcCCCce-----eeecccchhhh
Q 002411 542 PPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM-DPKNSKELVDKTKERYWSPVD-----VYVGGAEHAVL 615 (926)
Q Consensus 542 ~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~-~p~~~~~~~~~~~~~~w~PvD-----l~v~G~D~~~~ 615 (926)
.|+++|||+...|+... ++.... ....++ +|.| +++.|+|++.+
T Consensus 246 -------------------------~~~yvW~da~~~y~~~~~~~~~~~----~~~~~~-w~~~~~~~~v~~~G~Di~~~ 295 (530)
T TIGR00398 246 -------------------------KVVYVWFDALIGYISSLGILSGDT----EDWKKW-WNNDEDAELIHFIGKDIVRF 295 (530)
T ss_pred -------------------------cEEEEeecchHHhHhhhccccCCh----hhHHHh-CCCCCCceEEEEEecccchh
Confidence 25679999875555432 222111 122344 5999 99999999988
Q ss_pred hHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcc
Q 002411 616 HLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPD 695 (926)
Q Consensus 616 HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~ 695 (926)
|.+| |.+++ .+ .+..|++.+++ |||++++ |+|||||+||+|+|.
T Consensus 296 h~~~---~~a~l-------------------~~---~~~~~~~~~~~--~g~v~~~---------g~KmSKS~Gn~i~~~ 339 (530)
T TIGR00398 296 HTIY---WPAML-------------------MG---LGLPLPTQVFS--HGYLTVE---------GGKMSKSLGNVVDPS 339 (530)
T ss_pred HHHH---HHHHH-------------------Hh---CCCCCCCEEEe--eccEEEC---------CceecccCCceecHH
Confidence 8654 43221 11 12356788887 7999987 899999999999999
Q ss_pred hhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHH--HHHHHHHHHHh---cCCC--CCCCCCCCcccCCCCchHHHHH
Q 002411 696 DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH--RFLGRMWRLIV---GSSL--PDGTFKGGTVVNDEEPTLEQLC 768 (926)
Q Consensus 696 eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~--r~L~r~~~~~~---~~~~--~~~~~~~~~~~~~~~~d~~~l~ 768 (926)
++|++||+|++|||+++.++..++.+|+++.+.... ++++++++++. .... .++..... ......|.++++
T Consensus 340 d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~--~~~~~~d~~ll~ 417 (530)
T TIGR00398 340 DLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVLPSE--DITDEEDKKLLK 417 (530)
T ss_pred HHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCC--cccchhhHHHHH
Confidence 999999999999999988888999999998887653 34444444331 1000 01111000 011245788999
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc-------------------chHHHHHHHHHHhhchhhHHHHHH
Q 002411 769 TLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK-------------------HPRKIIEPFILLLAPYAPHMSEEL 829 (926)
Q Consensus 769 ~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~-------------------~~~~~l~~l~~lLaP~~P~~aEel 829 (926)
+++++++.++++|++|+|+.|++.+++|++..|.|.. ...++++.++++|+|||||+||||
T Consensus 418 ~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i 497 (530)
T TIGR00398 418 LINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSILLYPIMPKLSEKI 497 (530)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence 9999999999999999999999999999987776531 113689999999999999999999
Q ss_pred HHHcCCC
Q 002411 830 WFRLGHS 836 (926)
Q Consensus 830 w~~L~~~ 836 (926)
|++|+.+
T Consensus 498 ~~~L~~~ 504 (530)
T TIGR00398 498 LKFLNFE 504 (530)
T ss_pred HHHhCCC
Confidence 9999853
No 35
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.5e-69 Score=650.55 Aligned_cols=444 Identities=18% Similarity=0.313 Sum_probs=352.4
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhh-hhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~-~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (926)
.++++|||+.++|||||. |||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|.+.|.+|+++++++.+.
T Consensus 14 ~~~~~~~ITt~~pY~Ng~-~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~ 92 (801)
T PLN02610 14 PGKRNILITSALPYVNNV-PHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAI 92 (801)
T ss_pred CCCCCEEEeCCCCCCCCC-cccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456789999999999998 99999997 6779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhc---------------
Q 002411 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV--------------- 234 (926)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~--------------- 234 (926)
+++++++|||++| ++++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++..|.
T Consensus 93 ~~~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~G 170 (801)
T PLN02610 93 HKEVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARG 170 (801)
T ss_pred HHHHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCcccccc
Confidence 9999999999887 99999999999999999999999999999999999999999999887764
Q ss_pred ----------------cCccccCCCCeEEeeccccchhhhhhHHHHhhccCCC----CCcHHHHHHHHhhhccCCCceEE
Q 002411 235 ----------------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL----DWPESVKEMQRNWIGRSEGAEMD 294 (926)
Q Consensus 235 ----------------~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~----~~p~~~~~~~~~~i~~s~~~~v~ 294 (926)
+++|.+||.+++.++++||||+|++|+++|++++++. .|++++..
T Consensus 171 d~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~--------------- 235 (801)
T PLN02610 171 DQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQ--------------- 235 (801)
T ss_pred chhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHH---------------
Confidence 4456668899999999999999999999998876421 01111111
Q ss_pred EEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccc
Q 002411 295 FRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSG 374 (926)
Q Consensus 295 f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g 374 (926)
T Consensus 236 -------------------------------------------------------------------------------- 235 (801)
T PLN02610 236 -------------------------------------------------------------------------------- 235 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCc
Q 002411 375 CYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNL 454 (926)
Q Consensus 375 ~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~ 454 (926)
T Consensus 236 -------------------------------------------------------------------------------- 235 (801)
T PLN02610 236 -------------------------------------------------------------------------------- 235 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCccccc
Q 002411 455 ISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDF 534 (926)
Q Consensus 455 ~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~ 534 (926)
.+.+|+.+ .|+||||||...||+|+|. + |.
T Consensus 236 ----------------~~~~~l~~----------gL~d~~IsR~~~WGipvP~----~-~~------------------- 265 (801)
T PLN02610 236 ----------------TTNAWLRD----------GLKPRCITRDLKWGVPVPL----E-KY------------------- 265 (801)
T ss_pred ----------------HHHHHHhC----------CCCCcceeeecCCcccCCC----C-CC-------------------
Confidence 11123321 2789999999999999996 1 10
Q ss_pred CCCCCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCC-Cce---eeeccc
Q 002411 535 TPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWS-PVD---VYVGGA 610 (926)
Q Consensus 535 ~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~-PvD---l~v~G~ 610 (926)
+.-|+.||||....|+..+.-. ...+.+||. |.| +|+-|+
T Consensus 266 ------------------------------~~~v~YVWfDAl~~Yis~~~~~------~~~~~~~W~~~~~~~~~hfiGK 309 (801)
T PLN02610 266 ------------------------------KDKVFYVWFDAPIGYVSITACY------TPEWEKWWKNPENVELYQFMGK 309 (801)
T ss_pred ------------------------------CCcEEEEehhhHHHHHHHHhhh------hhHHHHhcCCcccceEEEEEee
Confidence 1127789999998887653111 112346663 237 799999
Q ss_pred chhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccC-CCcceEEeecceeEeccCCccccccccccccccCC
Q 002411 611 EHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQES-IPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRG 689 (926)
Q Consensus 611 D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~-~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkG 689 (926)
|++.+|. .+|.+++. +. ... .+.+.+++ |||++.+ |+|||||+|
T Consensus 310 Di~~fH~---i~wPa~L~-----------a~----------g~~~~~p~~i~~--~g~l~~e---------G~KMSKS~G 354 (801)
T PLN02610 310 DNVPFHT---VMFPSTLL-----------GT----------GENWTMMKTISV--TEYLNYE---------GGKFSKSKG 354 (801)
T ss_pred ecchhHH---HHHHHHHH-----------hC----------CCCcCCCCEEEe--ccCEecC---------CceecCcCC
Confidence 9999994 45665421 11 111 23456665 8999987 899999999
Q ss_pred CccCcchhhhh-cCchhhhHHhhhcCCcCCCCcCCchhhHHHH---------HHHHHHHHHHhcCCCCCCCCCCCcccC-
Q 002411 690 NVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVN- 758 (926)
Q Consensus 690 Nvv~p~eii~~-yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~---------r~L~r~~~~~~~~~~~~~~~~~~~~~~- 758 (926)
|+|+|.+++++ ||+|++||||+..++..+|.+|+++.+.... |+++|+..++.... .++.++.++.
T Consensus 355 NvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~---~k~~~g~vp~~ 431 (801)
T PLN02610 355 VGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPP---GAGYGSVIPDA 431 (801)
T ss_pred cccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhccCCcCCCc
Confidence 99999999996 9999999999999999999999987766553 45555555553100 0122222221
Q ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc--------------------hHHHHHHH
Q 002411 759 ----DEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH--------------------PRKIIEPF 814 (926)
Q Consensus 759 ----~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~--------------------~~~~l~~l 814 (926)
....|.+++++++++++++.++|++|+|+.|++.+|+|.+.+|+|.+. ..++++.+
T Consensus 432 ~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L~k~d~~~l~~vl~~~le~lr~l 511 (801)
T PLN02610 432 PGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDKPSCAIVVKTSVGLVYLL 511 (801)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhhCCCHHHHHHHHHHHHHHHHHH
Confidence 123467889999999999999999999999999999999888875321 11578999
Q ss_pred HHHhhchhhHHHHHHHHHcCCC
Q 002411 815 ILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 815 ~~lLaP~~P~~aEelw~~L~~~ 836 (926)
++||+||||++||+||++||..
T Consensus 512 a~LL~PfmP~~aeeI~~~Lg~~ 533 (801)
T PLN02610 512 ACLLEPFMPSFSKEVLKQLNLP 533 (801)
T ss_pred HHHHhCcccHHHHHHHHHhCCC
Confidence 9999999999999999999854
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.5e-69 Score=635.83 Aligned_cols=441 Identities=26% Similarity=0.422 Sum_probs=350.4
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
++|+|+++||||||. +||||+++++.+|+++||+||+|++|.+++|+|+||+||+.+|.+.|.++.++++++.+.|+++
T Consensus 1 ~~~~i~~~~P~~~g~-~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 79 (511)
T PRK11893 1 KKFYITTPIYYPNGK-PHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRL 79 (511)
T ss_pred CCEEEecCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 469999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccC--ccccCCCCeEEeecc
Q 002411 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG--VSERGGHPVIRKPMR 251 (926)
Q Consensus 174 l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~--~~~~~~~~~~~~~~~ 251 (926)
|++|||.+| .++.|+++.|.+.++++|.+|+++|++|++.++|+||+.|+++|++.|++++ +|++||.+++.++.+
T Consensus 80 l~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~ 157 (511)
T PRK11893 80 WEALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEE 157 (511)
T ss_pred HHHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecC
Confidence 999999877 7889999999999999999999999999999999999999999999999984 599999999999999
Q ss_pred ccchhhhhhHHHHhhccCCC-C--CcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEEC
Q 002411 252 QWMLKITEYADRLLDDLDDL-D--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVA 328 (926)
Q Consensus 252 ~~~l~l~~y~~~l~~~l~~~-~--~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~ 328 (926)
||||+++++++.|.+.+++. . +|+.
T Consensus 158 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~---------------------------------------------------- 185 (511)
T PRK11893 158 SYFFRLSKYQDKLLELYEANPDFIQPAS---------------------------------------------------- 185 (511)
T ss_pred eEEEEcHHHHHHHHHHHHhCCCccCCHH----------------------------------------------------
Confidence 99999999998877653210 0 0100
Q ss_pred CCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCC
Q 002411 329 PEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPA 408 (926)
Q Consensus 329 p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pa 408 (926)
T Consensus 186 -------------------------------------------------------------------------------- 185 (511)
T PRK11893 186 -------------------------------------------------------------------------------- 185 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 002411 409 HDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (926)
Q Consensus 409 h~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~ 488 (926)
....+.+|+.+
T Consensus 186 -----------------------------------------------------------~~~~~~~~l~~---------- 196 (511)
T PRK11893 186 -----------------------------------------------------------RRNEVISFVKS---------- 196 (511)
T ss_pred -----------------------------------------------------------HHHHHHHHHHC----------
Confidence 01112223321
Q ss_pred ecCCeeecc-ccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCC
Q 002411 489 KLRDWLFAR-QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETS 567 (926)
Q Consensus 489 ~l~DW~ISR-QR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d 567 (926)
+++|||||| |++||+|||.. + ..
T Consensus 197 ~~~D~~isR~~~~WGipiP~~---~-----------------------------------------------------~~ 220 (511)
T PRK11893 197 GLKDLSISRTNFDWGIPVPGD---P-----------------------------------------------------KH 220 (511)
T ss_pred CCCCcccCCCCCCCCccCCCC---C-----------------------------------------------------Cc
Confidence 368999999 99999999961 0 02
Q ss_pred CcCccccccchhhhh-cCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccc
Q 002411 568 TMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDT 646 (926)
Q Consensus 568 ~mD~WfdSsw~~l~~-~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~ 646 (926)
+++|||||++.|+.. ++|.++..+ .+.. ++|+|.|+|++|+|++.+|..+ |.+
T Consensus 221 ~~~vWfda~~~y~s~~~~p~~~~~~-~~~~-~~~~~~D~~~~G~D~~~~h~~~---~~a--------------------- 274 (511)
T PRK11893 221 VIYVWFDALTNYLTALGYPDDEELL-AELF-NKYWPADVHLIGKDILRFHAVY---WPA--------------------- 274 (511)
T ss_pred eEEEEecCcHHHHhHhccccccccc-hhHH-HhcCCCcceEecccccccchhH---HHH---------------------
Confidence 678999998666543 556533211 1122 3456999999999999777544 221
Q ss_pred cccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchh
Q 002411 647 LGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSG 726 (926)
Q Consensus 647 ~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~ 726 (926)
++.++....| +.+++ |||++.+ |+|||||+||+|+|.+++++||+|++|||+++.++.+.+.+|+++.
T Consensus 275 ~~~a~~~~~p-~~~~~--~g~v~~~---------G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~ 342 (511)
T PRK11893 275 FLMAAGLPLP-KRVFA--HGFLTLD---------GEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREA 342 (511)
T ss_pred HHHhCCCCCC-CEEEe--eccEEEC---------CeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHH
Confidence 1112234667 77776 7999985 8999999999999999999999999999999888888999999988
Q ss_pred hHHHHH-----H----HHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002411 727 IEGVHR-----F----LGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFI 797 (926)
Q Consensus 727 i~~~~r-----~----L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~ 797 (926)
+..+.+ . ++|+..++.... +. ..+.. ......|.+++++++++++.+.++|++|+|+.|++.+++|+
T Consensus 343 ~~~~~~~~l~~~l~n~~~r~~~~~~~~~--~~-~~~~~-~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~ 418 (511)
T PRK11893 343 FINRINADLANDLGNLAQRTLSMIAKNF--DG-KVPEP-GALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALV 418 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC-CCCCC-cccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 865433 2 233333332110 01 11100 01133467788999999999999999999999999999999
Q ss_pred HHHhcccc--------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 798 NAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 798 ~~~~~~~~--------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
+.++.|.. ...++++.+++||+|||||+||+||+.|+.+
T Consensus 419 ~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~~ 477 (511)
T PRK11893 419 RAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGVE 477 (511)
T ss_pred HHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCCC
Confidence 88776532 1135788999999999999999999999854
No 37
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.4e-69 Score=648.79 Aligned_cols=443 Identities=22% Similarity=0.322 Sum_probs=352.2
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
++|+|+.+||||||. |||||+++++++|+++||+||+|++|+|++|||+||+||+.+|.+.|.+|.++++++++.|+++
T Consensus 2 ~~~~itt~~py~ng~-~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANGP-IHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCCc-ccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 469999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhc-------------------
Q 002411 174 LKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVV------------------- 234 (926)
Q Consensus 174 l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~------------------- 234 (926)
+++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|++.+|.
T Consensus 81 ~~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~c 158 (673)
T PRK00133 81 FAGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVC 158 (673)
T ss_pred HHHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhc
Confidence 999999887 68999999999999999999999999999999999999999999977664
Q ss_pred ----------cCccccCCCCeEEeeccccchhhhhhHHHHhhccCC-CCCcHHHHHHHHhhhccCCCceEEEEeecCCCC
Q 002411 235 ----------DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD-LDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ 303 (926)
Q Consensus 235 ----------~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~-~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~ 303 (926)
++.|.+||.+++.++++||||++++|+++|++++++ ..||+++++...+||
T Consensus 159 g~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l------------------ 220 (673)
T PRK00133 159 GATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVANKMKEWL------------------ 220 (673)
T ss_pred cccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------------------
Confidence 456788899999999999999999999999988753 236555544333332
Q ss_pred ccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCC
Q 002411 304 ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383 (926)
Q Consensus 304 ~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~ 383 (926)
T Consensus 221 -------------------------------------------------------------------------------- 220 (673)
T PRK00133 221 -------------------------------------------------------------------------------- 220 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCC
Q 002411 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGL 463 (926)
Q Consensus 384 ~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl 463 (926)
T Consensus 221 -------------------------------------------------------------------------------- 220 (673)
T PRK00133 221 -------------------------------------------------------------------------------- 220 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeeecCCeeecccccc-CCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCC
Q 002411 464 SCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYW-GEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEP 542 (926)
Q Consensus 464 ~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~W-G~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~ 542 (926)
.+ .|+|||||||+.| |+|+|- +.+
T Consensus 221 -------------~~----------~l~d~~ISR~~~W~GipvP~----~~~---------------------------- 245 (673)
T PRK00133 221 -------------EE----------GLQDWDISRDAPYFGFEIPG----APG---------------------------- 245 (673)
T ss_pred -------------hC----------CCcccceeeeCCccceECCC----CCC----------------------------
Confidence 10 2689999999999 999992 111
Q ss_pred CccccccceecccCCCCCCCcccCCCcCccccccchhhhhc--CCCCChhhcchhhhhcCCCc----eeeecccchhhhh
Q 002411 543 PLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNSKELVDKTKERYWSPV----DVYVGGAEHAVLH 616 (926)
Q Consensus 543 ~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~--~p~~~~~~~~~~~~~~w~Pv----Dl~v~G~D~~~~H 616 (926)
.|++||||+.+.|+... ++.... ...+..+|.|. .+|+.|+|++.+|
T Consensus 246 ------------------------~~iyVW~dal~~Yl~~~~~~~~~~~---~~~~~~~w~~~~~~~~v~~iGkDi~~fH 298 (673)
T PRK00133 246 ------------------------KVFYVWLDAPIGYISSTKNLCDKRG---GLDWDEYWKKDSDTELYHFIGKDIIYFH 298 (673)
T ss_pred ------------------------eEEEEcccchhhhhHHHhhhccccc---chhHHHhcCCCCCceEEEEEeecchhHH
Confidence 25679999987776544 222100 01233555333 2899999999988
Q ss_pred HHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcch
Q 002411 617 LLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDD 696 (926)
Q Consensus 617 Lly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~e 696 (926)
+.+|.+++.. .+..++++|+. |||++++ |+|||||+||+|+|.+
T Consensus 299 ---~i~wpa~l~a----------------------~g~~lP~~v~~--hg~v~~~---------G~KMSKS~GNvV~p~d 342 (673)
T PRK00133 299 ---TLFWPAMLEG----------------------AGYRLPTNVFA--HGFLTVE---------GAKMSKSRGTFIWART 342 (673)
T ss_pred ---HHHHHHHHHh----------------------CCCCCCCEEee--eccEEec---------CCcccccCCcccCHHH
Confidence 4567654211 12233478887 7999985 8999999999999999
Q ss_pred hhhhcCchhhhHHhhhcCCcC-CCCcCCchhhHHH--HHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHH
Q 002411 697 VVTEYGADSLRLYEMFMGPFR-DSKTWNTSGIEGV--HRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKC 773 (926)
Q Consensus 697 ii~~yGaD~lRl~ll~~~~~~-~~~~~~~~~i~~~--~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~ 773 (926)
+|++||+|++|||+|+.++.. ++.+|+++.+... .+++++++|++............+..+ ....+.+++++++++
T Consensus 343 lie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~-~~~~d~~ll~~l~~~ 421 (673)
T PRK00133 343 YLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFDGKLP-DALADPELLEEFEAA 421 (673)
T ss_pred HHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCcccHHHHHHHHHH
Confidence 999999999999999988888 8889998876542 234555555432100000001111111 234578999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhccccc--------------------hHHHHHHHHHHhhchhhHHHHHHHHHc
Q 002411 774 IAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH--------------------PRKIIEPFILLLAPYAPHMSEELWFRL 833 (926)
Q Consensus 774 i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~--------------------~~~~l~~l~~lLaP~~P~~aEelw~~L 833 (926)
++++.++|++|+|+.|++.+++|++..|+|... ..++++.+++||+|||||+||+||++|
T Consensus 422 ~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~L 501 (673)
T PRK00133 422 AEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFL 501 (673)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHh
Confidence 999999999999999999999999877664210 125678899999999999999999999
Q ss_pred CCC
Q 002411 834 GHS 836 (926)
Q Consensus 834 ~~~ 836 (926)
|.+
T Consensus 502 g~~ 504 (673)
T PRK00133 502 NLE 504 (673)
T ss_pred CCC
Confidence 864
No 38
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-68 Score=611.49 Aligned_cols=444 Identities=26% Similarity=0.458 Sum_probs=358.7
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++|+|+.++|||||. |||||+++++.+||++||+||+|++|+|++|+|+||+||+.+|+++|++|+++++++.+.+++
T Consensus 4 ~~~~~VTtalpY~Ng~-~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~ 82 (558)
T COG0143 4 MKKILVTTALPYPNGP-PHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKE 82 (558)
T ss_pred CCcEEEecCCCCCCCC-cchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5789999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCch---------------------
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE--------------------- 231 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~--------------------- 231 (926)
.++.|+|++| .+.+|+++.|.+.+|++|.+|+++|+||.+...+.||++|++.|.+.
T Consensus 83 ~~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~ 160 (558)
T COG0143 83 LFKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCEN 160 (558)
T ss_pred HHHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhh
Confidence 9999999999 99999999999999999999999999999999999998877777554
Q ss_pred --------hhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC---CcHHHHHHHHhhhccCCCceEEEEeecC
Q 002411 232 --------EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLDS 300 (926)
Q Consensus 232 --------ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~---~p~~~~~~~~~~i~~s~~~~v~f~~~~~ 300 (926)
++++++|++||.+++.|+.++|||+|++|.++|++++++.. ||++++++..+|
T Consensus 161 Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~---------------- 224 (558)
T COG0143 161 CGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNF---------------- 224 (558)
T ss_pred ccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChHHHHHHHHH----------------
Confidence 44566677778888888899999999999999998876432 444444333222
Q ss_pred CCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecC
Q 002411 301 DGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNP 380 (926)
Q Consensus 301 ~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P 380 (926)
T Consensus 225 -------------------------------------------------------------------------------- 224 (558)
T COG0143 225 -------------------------------------------------------------------------------- 224 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCccccccc
Q 002411 381 ASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDI 460 (926)
Q Consensus 381 ~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~ 460 (926)
T Consensus 225 -------------------------------------------------------------------------------- 224 (558)
T COG0143 225 -------------------------------------------------------------------------------- 224 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeecc-ccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCC
Q 002411 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFAR-QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (926)
Q Consensus 461 ~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISR-QR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~ 539 (926)
++. .|+||+||| .-.||+|+|- ..+
T Consensus 225 ---------------i~~----------GL~d~~IsR~~~~WGipvP~----~p~------------------------- 250 (558)
T COG0143 225 ---------------LKE----------GLKDLSITRTDLDWGIPVPG----DPG------------------------- 250 (558)
T ss_pred ---------------HHc----------cCcccceecCCCCCCccCCC----CCC-------------------------
Confidence 211 268999999 8999999992 211
Q ss_pred CCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCce----eeecccchhhh
Q 002411 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVD----VYVGGAEHAVL 615 (926)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvD----l~v~G~D~~~~ 615 (926)
-|+.||||....|+..+.-... .-.+..+.+|| |.| +|+.|+|++.+
T Consensus 251 ---------------------------kv~YVWfDAligYisa~~~~~~-~~~~~~~~~~W-~~~~~e~vhfIGKDii~F 301 (558)
T COG0143 251 ---------------------------KVIYVWFDALIGYISALGELAE-IGDDEDFKKFW-PADDTELVHFIGKDIIRF 301 (558)
T ss_pred ---------------------------CEEEEeeccHHHHHHHhcchhc-cCChHHHHhhC-CCCCceEEEEeccccCcc
Confidence 1567999998888765432110 00112344565 888 99999999999
Q ss_pred hHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcc
Q 002411 616 HLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPD 695 (926)
Q Consensus 616 HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~ 695 (926)
| +.||.+++. ++ ....| +.|+. |||++.+ |+|||||+||+|+|.
T Consensus 302 H---av~wPamL~-----------~~----------~~~lP-~~i~a--hg~l~~~---------G~KmSKSrG~~V~~~ 345 (558)
T COG0143 302 H---AVYWPAMLM-----------AA----------GLPLP-TRIFA--HGFLTLE---------GQKMSKSRGNVVDPD 345 (558)
T ss_pred h---hhHHHHHHH-----------hC----------CCCCC-CEEEe--eeeEEEC---------CccccccCCcEEeHH
Confidence 9 456765421 11 12344 46665 8999988 899999999999999
Q ss_pred hhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHH---------HHHHHHHHHHhcCCCCCCCCCCCcccCC----CCc
Q 002411 696 DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVND----EEP 762 (926)
Q Consensus 696 eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~---------r~L~r~~~~~~~~~~~~~~~~~~~~~~~----~~~ 762 (926)
++++.||+|++|||++...|..+|.+|+.+.+.... |+++|+..|+..+ .++.++.. ...
T Consensus 346 ~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~-------~~g~vp~~~~~~~~~ 418 (558)
T COG0143 346 ELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKY-------FDGVVPAAGAPDLEE 418 (558)
T ss_pred HHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cCCcCCccccccchh
Confidence 999999999999999999999999999988876543 4666666666322 12222111 134
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc---------------------hHHHHHHHHHHhhch
Q 002411 763 TLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH---------------------PRKIIEPFILLLAPY 821 (926)
Q Consensus 763 d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~---------------------~~~~l~~l~~lLaP~ 821 (926)
|.+++.....+.+++.++|++++|++|++.+|+++...|+|.+. ..++++.++.||+||
T Consensus 419 d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~ 498 (558)
T COG0143 419 DEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPF 498 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 66788899999999999999999999999999999999886421 125789999999999
Q ss_pred hhHHHHHHHHHcCCCCCccc
Q 002411 822 APHMSEELWFRLGHSNSLAY 841 (926)
Q Consensus 822 ~P~~aEelw~~L~~~~sv~~ 841 (926)
||.+|++||++|+.+.+...
T Consensus 499 mP~~a~ki~~~L~~~~~~~~ 518 (558)
T COG0143 499 MPETAEKIWDQLGLEEDARN 518 (558)
T ss_pred CcchHHHHHHHhCCcccccc
Confidence 99999999999997655543
No 39
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.6e-64 Score=563.68 Aligned_cols=319 Identities=35% Similarity=0.654 Sum_probs=263.4
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHh-CCCc-------------
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHP------------- 159 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~-g~~~------------- 159 (926)
+||+|++||||+||. |||||+++++++|+++||+||+|++|.+++||||||+|||.+|++. |.++
T Consensus 1 ~~f~i~~~pP~vnG~-lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~ 79 (338)
T cd00818 1 PEFVFHDGPPYANGL-PHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFN 79 (338)
T ss_pred CCeEEecCCCCCCCC-chHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHH
Confidence 479999999999998 9999999999999999999999999999999999999999999886 7654
Q ss_pred ---hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccC
Q 002411 160 ---KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG 236 (926)
Q Consensus 160 ---~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~ 236 (926)
+++++++++.|++++++||++.||++++.|+++.|.+.++++|.+|+++|+||++.++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~---------------- 143 (338)
T cd00818 80 AKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW---------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee----------------
Confidence 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCC-cHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecC
Q 002411 237 VSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTR 315 (926)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~-p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTr 315 (926)
+++.++.+||||++++++++|++.++..+| |+.++
T Consensus 144 -------~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~~~------------------------------------- 179 (338)
T cd00818 144 -------PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEWVK------------------------------------- 179 (338)
T ss_pred -------EEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHHHH-------------------------------------
Confidence 778899999999999999888776543221 22211
Q ss_pred CccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCccc
Q 002411 316 PDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVL 395 (926)
Q Consensus 316 P~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~ 395 (926)
T Consensus 180 -------------------------------------------------------------------------------- 179 (338)
T cd00818 180 -------------------------------------------------------------------------------- 179 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHH
Q 002411 396 GSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEW 475 (926)
Q Consensus 396 ~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~ 475 (926)
..+.+|
T Consensus 180 --------------------------------------------------------------------------~~~~~~ 185 (338)
T cd00818 180 --------------------------------------------------------------------------NRFGNW 185 (338)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 122233
Q ss_pred HHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceeccc
Q 002411 476 AEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTE 555 (926)
Q Consensus 476 l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~ 555 (926)
+. +++||||||||+||+|||+|+|++||.+++
T Consensus 186 l~-----------~l~dw~iSR~~~WGip~P~~~~~~~~~~~~------------------------------------- 217 (338)
T cd00818 186 LE-----------NRRDWCISRQRYWGTPIPVWYCEDCGEVLV------------------------------------- 217 (338)
T ss_pred Hh-----------cchhcceeeecccCceeeEEEecCCCeEEE-------------------------------------
Confidence 32 268999999999999999999977653221
Q ss_pred CCCCCCCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecC
Q 002411 556 HSSGKPARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDV 634 (926)
Q Consensus 556 ~~~g~~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~ 634 (926)
.|+++||||||||+ +++....+|.+.. ++ ++|+|+|+++.|+|++ |+|++.+.
T Consensus 218 -------~~~~~v~~vWfda~~~~~~~~~~~~~~~-----~~-~~~~p~d~~~~GkDii-------~~wf~~~~------ 271 (338)
T cd00818 218 -------RRVPDVLDVWFDSGSMPYAQLHYPFENE-----DF-EELFPADFILEGSDQT-------RGWFYSLL------ 271 (338)
T ss_pred -------ecCCceEEEEEeCCCCHHHHcCCCCcch-----hh-hccCCCeEEeecchHH-------hHHHHHHH------
Confidence 35789999999996 5554444554321 12 4567999999999998 44443321
Q ss_pred CCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcC
Q 002411 635 DGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMG 714 (926)
Q Consensus 635 ~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~ 714 (926)
+.+.+..+..|++++++ ||++++.+ |+|||||+||+|+|.+++++||+|++|||+++.+
T Consensus 272 -----------~~~~~~~~~~p~~~~~~--hg~~~~~~--------g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~~~ 330 (338)
T cd00818 272 -----------LLSTALFGKAPYKNVIV--HGFVLDED--------GRKMSKSLGNYVDPQEVVDKYGADALRLWVASSD 330 (338)
T ss_pred -----------HHHHHhcCCCccceEEE--EeeEECCC--------CCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHhCC
Confidence 11122345789999998 79998865 9999999999999999999999999999999888
Q ss_pred CcCCCCcC
Q 002411 715 PFRDSKTW 722 (926)
Q Consensus 715 ~~~~~~~~ 722 (926)
+..+|..|
T Consensus 331 ~~~~d~~~ 338 (338)
T cd00818 331 VYAEDLRF 338 (338)
T ss_pred CccCCCCC
Confidence 87777643
No 40
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-57 Score=481.24 Aligned_cols=448 Identities=23% Similarity=0.361 Sum_probs=354.0
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
.+.|+++.+.-|+|.. +||||+++.+++|+++||+|++|..|.|..|+|+||+.|..+|...|..|.+.|++..+.|++
T Consensus 38 ~~~~~lTTPifYvNAa-PHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q 116 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAA-PHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ 116 (578)
T ss_pred CceeEEecceeecCCC-cchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHH
Confidence 4589999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhcc-Cc------cccCCCCe
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GV------SERGGHPV 245 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~-~~------~~~~~~~~ 245 (926)
.++.+||.++ ++++|+||.|++.|++++..+.++|+||++.+..+||.+|+|.+.+.+|.. +. +-.+|.+|
T Consensus 117 L~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~v 194 (578)
T KOG0436|consen 117 LWKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPV 194 (578)
T ss_pred HHHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCce
Confidence 9999999998 999999999999999999999999999999999999999999999999963 22 33578899
Q ss_pred EEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEE
Q 002411 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (926)
Q Consensus 246 ~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v 325 (926)
+++++.+|||+|+.|.+.|.+++..
T Consensus 195 v~~kE~NY~FrLSkfqk~l~d~lrk------------------------------------------------------- 219 (578)
T KOG0436|consen 195 VWRKEDNYFFRLSKFQKPLEDHLRK------------------------------------------------------- 219 (578)
T ss_pred eEecccceeeeHHhhhhHHHHHHhc-------------------------------------------------------
Confidence 9999999999999999988776431
Q ss_pred EECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceee
Q 002411 326 VVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMA 405 (926)
Q Consensus 326 ~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~ 405 (926)
||+ ||.+++
T Consensus 220 --NP~--------------------------------------------------------------fvqPs~------- 228 (578)
T KOG0436|consen 220 --NPR--------------------------------------------------------------FVQPSY------- 228 (578)
T ss_pred --CCC--------------------------------------------------------------ccCchH-------
Confidence 111 110000
Q ss_pred cCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee
Q 002411 406 VPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (926)
Q Consensus 406 ~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~ 485 (926)
-...+.+||+.
T Consensus 229 --------------------------------------------------------------~~~qVl~~lkt------- 239 (578)
T KOG0436|consen 229 --------------------------------------------------------------FHNQVLSWLKT------- 239 (578)
T ss_pred --------------------------------------------------------------HHHHHHHHHHc-------
Confidence 01234555543
Q ss_pred EeeecCCeeecc--cc-ccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCC
Q 002411 486 VNYKLRDWLFAR--QR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPA 562 (926)
Q Consensus 486 ~~~~l~DW~ISR--QR-~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~ 562 (926)
.|+|-.||| +| -||+|.|- ++
T Consensus 240 ---glpDlSISRpsarl~WGIPvP~----dd------------------------------------------------- 263 (578)
T KOG0436|consen 240 ---GLPDLSISRPSARLDWGIPVPG----DD------------------------------------------------- 263 (578)
T ss_pred ---CCCcccccChhhhcccCCCCCC----CC-------------------------------------------------
Confidence 278999999 65 69999994 21
Q ss_pred cccCCCcCccccccchhhhh-cCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCcccc
Q 002411 563 RRETSTMPQWAGSCWYYLRF-MDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISA 641 (926)
Q Consensus 563 ~re~d~mD~WfdSsw~~l~~-~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~ 641 (926)
..|+.||||....|+.. ++|.... -+ +.....|+|+.+|+.|+|++.+|- .+|.+|+..
T Consensus 264 ---sQtIYVWfDAL~nYiSvig~~~~~~-N~-k~~ls~~wPat~HvIGKDIlrFHa---vYWPafLma------------ 323 (578)
T KOG0436|consen 264 ---SQTIYVWFDALLNYISVIGYPNKQQ-NL-KTALSFGWPATLHVIGKDILRFHA---VYWPAFLMA------------ 323 (578)
T ss_pred ---cceEEEeHHHHhhHHHhhcCCchhc-cc-cceeecCCCceeeehhhhhhhhhh---hhhHHHHHh------------
Confidence 12556999998888775 4453211 11 112267889999999999999994 457655221
Q ss_pred CcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCc
Q 002411 642 DSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKT 721 (926)
Q Consensus 642 ~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~ 721 (926)
.|..+.+.+++ ||+++.+ |.|||||+||||||.+++++||+|++|||+|..+..+.|.+
T Consensus 324 ----------AGlplP~~I~v--Hghwt~n---------gmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgd 382 (578)
T KOG0436|consen 324 ----------AGLPLPKMIFV--HGHWTKN---------GMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGD 382 (578)
T ss_pred ----------cCCCCccEEEE--eeeeeec---------ceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCC
Confidence 23444566666 7888877 89999999999999999999999999999999999999999
Q ss_pred CCchhhHHHH-HHHHHHHHHHhcCCCCCCCCC----CCcc----cCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 002411 722 WNTSGIEGVH-RFLGRMWRLIVGSSLPDGTFK----GGTV----VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISA 792 (926)
Q Consensus 722 ~~~~~i~~~~-r~L~r~~~~~~~~~~~~~~~~----~~~~----~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~ 792 (926)
|+++.+.... .-|.+.|..+++.... .+++ .... +........+...++++.+.+.+.|++|.+..|+++
T Consensus 383 y~eekl~k~~n~~La~~lG~LlnRc~g-kkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~ 461 (578)
T KOG0436|consen 383 YSEEKLIKIVNAHLANTLGNLLNRCLG-KKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEA 461 (578)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh-cccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHH
Confidence 9998887765 3455555433222111 0011 0111 111223445678889999999999999999999999
Q ss_pred HHHHHHHHhcccc-----------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 793 MMEFINAAYKWEK-----------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 793 l~~f~~~~~~~~~-----------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
+...+|+.|.+.+ ...++|+++.+||+|++|.++.+++++||-+
T Consensus 462 V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 462 VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 9999998876321 1137899999999999999999999999854
No 41
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1e-56 Score=498.03 Aligned_cols=297 Identities=36% Similarity=0.625 Sum_probs=244.8
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCC-------------CchH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGT-------------HPKI 161 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~-------------~~~~ 161 (926)
||+|+++||||||. |||||+++++++|+++||+||+|++|.+++||||||+||+.+|.+.+. .|++
T Consensus 1 ~~~i~~~pP~~~g~-~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGS-LHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCC-cchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHH
Confidence 59999999999998 999999999999999999999999999999999999999999999877 7899
Q ss_pred HHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccC
Q 002411 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERG 241 (926)
Q Consensus 162 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~ 241 (926)
+++++++.|+++|++|||++||++++.|+++.|.+.++++|.+|+++|+||++.++|
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v----------------------- 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV----------------------- 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee-----------------------
Confidence 999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCeEEeeccccchhhhhhHHHHhhccCCCC-CcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCcccc
Q 002411 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIF 320 (926)
Q Consensus 242 ~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~ 320 (926)
+...|||++++++++++++.++... +|+..++
T Consensus 137 ------~~~~~~f~~~~~l~~~~~~~~~~~~~~p~~~~~----------------------------------------- 169 (312)
T cd00668 137 ------RITEQWFFDMPKFKEKLLKALRRGKIVPEHVKN----------------------------------------- 169 (312)
T ss_pred ------EeeeeEEEEcHHHHHHHHHHHhcCCcCChHHHH-----------------------------------------
Confidence 5678899999999888776543322 2222111
Q ss_pred CCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCC
Q 002411 321 GATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGT 400 (926)
Q Consensus 321 g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GT 400 (926)
T Consensus 170 -------------------------------------------------------------------------------- 169 (312)
T cd00668 170 -------------------------------------------------------------------------------- 169 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcC
Q 002411 401 GAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTG 480 (926)
Q Consensus 401 G~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g 480 (926)
.+.+|+.
T Consensus 170 ----------------------------------------------------------------------~~~~~l~--- 176 (312)
T cd00668 170 ----------------------------------------------------------------------RMEAWLE--- 176 (312)
T ss_pred ----------------------------------------------------------------------HHHHHHh---
Confidence 1222222
Q ss_pred CCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCC
Q 002411 481 NGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGK 560 (926)
Q Consensus 481 ~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~ 560 (926)
+..|||||||++||+|+| +
T Consensus 177 --------~~~d~~isR~~~WG~~~P-------~---------------------------------------------- 195 (312)
T cd00668 177 --------SLLDWAISRQRYWGTPLP-------E---------------------------------------------- 195 (312)
T ss_pred --------CCCCeEEeccCCCCCcCC-------c----------------------------------------------
Confidence 124999999999999999 1
Q ss_pred CCcccCCCcCccccccchhhhhcC-CCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCcc
Q 002411 561 PARRETSTMPQWAGSCWYYLRFMD-PKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYI 639 (926)
Q Consensus 561 ~~~re~d~mD~WfdSsw~~l~~~~-p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~ 639 (926)
+|+||||||+.+|+.++. +.... . .++|+|+|+|++|+||+.+|..+..
T Consensus 196 ------~~i~~Wfds~~~~~~~~~~~~~~~-----~-~~~~~~~di~~~G~D~~~~h~~~~~------------------ 245 (312)
T cd00668 196 ------DVFDVWFDSGIGPLGSLGYPEEKE-----W-FKDSYPADWHLIGKDILRGWANFWI------------------ 245 (312)
T ss_pred ------ccccchhhccHHHHHHcCCCccch-----h-hhhcCCceEEEEecchhhhHHHHHH------------------
Confidence 277899999976665543 32211 1 2445699999999999855533221
Q ss_pred ccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCC
Q 002411 640 SADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDS 719 (926)
Q Consensus 640 s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~ 719 (926)
+++.++.+..|++++++ ||++++++ |+|||||+||+|+|.+++++||+|++|||++..+++.+|
T Consensus 246 ------~~~~~~~~~~~~~~~~~--~g~~~~~~--------g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d 309 (312)
T cd00668 246 ------TMLVALFGEIPPKNLLV--HGFVLDEG--------GQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDD 309 (312)
T ss_pred ------HHHHHhcCCCCcceeEE--CcEEEcCC--------CccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCC
Confidence 22334455668889988 79999885 799999999999999999999999999999988888877
Q ss_pred CcC
Q 002411 720 KTW 722 (926)
Q Consensus 720 ~~~ 722 (926)
.+|
T Consensus 310 ~~~ 312 (312)
T cd00668 310 IRL 312 (312)
T ss_pred CCC
Confidence 654
No 42
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.5e-56 Score=491.71 Aligned_cols=304 Identities=53% Similarity=0.998 Sum_probs=253.4
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
||+|+.+||||||. +||||+++++++|+++||+||+|++|.+++|+|+||+|++.+|.+.|.+|+++++++.+.+++++
T Consensus 1 k~~it~~~Py~ng~-~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~ 79 (314)
T cd00812 1 KFYILVMFPYPSGA-LHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQL 79 (314)
T ss_pred CeEEecCCCCCCCC-ccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 68999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccc
Q 002411 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWM 254 (926)
Q Consensus 175 ~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~ 254 (926)
++||+++||++++.|++|.|.+.++++|.+|+++|+||++..+|+|| +..+|||
T Consensus 80 ~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------~~~~~~f 133 (314)
T cd00812 80 KRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------KLLDQWF 133 (314)
T ss_pred HHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee--------------------------CccceEE
Confidence 99999999999999999999999999999999999999999999999 4578999
Q ss_pred hhh--hhhHHHHhhccCCCC-CcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCC
Q 002411 255 LKI--TEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEH 331 (926)
Q Consensus 255 l~l--~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~ 331 (926)
|++ ++|++.|.+++++.. ||+++++
T Consensus 134 ~~l~~~~~~~~l~~~l~~~~~~p~~~~~---------------------------------------------------- 161 (314)
T cd00812 134 LKYSETEWKEKLLKDLEKLDGWPEEVRA---------------------------------------------------- 161 (314)
T ss_pred EEcCcHHHHHHHHHHHHhcCcCCHHHHH----------------------------------------------------
Confidence 999 999998887664332 3332221
Q ss_pred ccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCCh
Q 002411 332 PLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDT 411 (926)
Q Consensus 332 ~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~ 411 (926)
T Consensus 162 -------------------------------------------------------------------------------- 161 (314)
T cd00812 162 -------------------------------------------------------------------------------- 161 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecC
Q 002411 412 RDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLR 491 (926)
Q Consensus 412 ~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~ 491 (926)
.+.+|+.
T Consensus 162 -----------------------------------------------------------~~~~~l~-------------- 168 (314)
T cd00812 162 -----------------------------------------------------------MQENWIG-------------- 168 (314)
T ss_pred -----------------------------------------------------------HHHHHhe--------------
Confidence 1222331
Q ss_pred CeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcCc
Q 002411 492 DWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQ 571 (926)
Q Consensus 492 DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~ 571 (926)
||||+.||+|+|+ . +|+|+
T Consensus 169 ---isR~~~wGipvP~----~------------------------------------------------------~~i~~ 187 (314)
T cd00812 169 ---CSRQRYWGTPIPW----T------------------------------------------------------DTMES 187 (314)
T ss_pred ---eeeecCCcCCcCc----c------------------------------------------------------ccccc
Confidence 8999999999996 0 26789
Q ss_pred cccccchhhhhcCCCCChhh------cchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccc
Q 002411 572 WAGSCWYYLRFMDPKNSKEL------VDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTD 645 (926)
Q Consensus 572 WfdSsw~~l~~~~p~~~~~~------~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~ 645 (926)
|+||+||++.|+........ ..++..++|+|+|+|++|+||+.+|+.|.++|+++++.+. +
T Consensus 188 w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g------~------- 254 (314)
T cd00812 188 LSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEG------L------- 254 (314)
T ss_pred ccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcc------c-------
Confidence 99999998888753321110 0122246789999999999999999999999997643220 0
Q ss_pred ccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCC
Q 002411 646 TLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 723 (926)
Q Consensus 646 ~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~ 723 (926)
. ...+++++.. ||+|+.+ |+|||||+||+|+|++++++||+|++|||+++.++ .+.+|+
T Consensus 255 ----~--~~~~~~~~~~--~g~v~~~---------g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~--~~~~f~ 313 (314)
T cd00812 255 ----V--TDEPPKGLIV--QGMVLLE---------GEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP--PDADFD 313 (314)
T ss_pred ----c--cccCcHHhee--cceEecC---------ccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC--cCCCCC
Confidence 0 0134556664 8999976 89999999999999999999999999999998877 444444
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.4e-55 Score=489.60 Aligned_cols=314 Identities=28% Similarity=0.474 Sum_probs=258.0
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
||+|+.+||||||. |||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|.++|.+|+++++++++.|++++
T Consensus 1 ~~~it~~~Py~ng~-~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l 79 (319)
T cd00814 1 KVLITTALPYVNGV-PHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLF 79 (319)
T ss_pred CEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccc
Q 002411 175 KSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWM 254 (926)
Q Consensus 175 ~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~ 254 (926)
++|||.+| .++.|+++.|.+.++++|.+|+++|++|++...++||+.|+++|+ +.++++|||
T Consensus 80 ~~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~----------------e~~~~~~~f 141 (319)
T cd00814 80 KWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP----------------EWREEEHYF 141 (319)
T ss_pred HHcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------EEEeeeeEE
Confidence 99999776 788999999999999999999999999999999999999999998 678889999
Q ss_pred hhhhhhHHHHhhccCCCC---CcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCC
Q 002411 255 LKITEYADRLLDDLDDLD---WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEH 331 (926)
Q Consensus 255 l~l~~y~~~l~~~l~~~~---~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~ 331 (926)
|+|++|++.|++++++.. ||+++++.+++
T Consensus 142 f~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~------------------------------------------------ 173 (319)
T cd00814 142 FRLSKFQDRLLEWLEKNPDFIWPENARNEVLS------------------------------------------------ 173 (319)
T ss_pred EEhHHHHHHHHHHHHhCCccCCCHHHHHHHHH------------------------------------------------
Confidence 999999999887665321 44443333222
Q ss_pred ccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCCh
Q 002411 332 PLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDT 411 (926)
Q Consensus 332 ~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~ 411 (926)
T Consensus 174 -------------------------------------------------------------------------------- 173 (319)
T cd00814 174 -------------------------------------------------------------------------------- 173 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecC
Q 002411 412 RDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLR 491 (926)
Q Consensus 412 ~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~ 491 (926)
|+.+ .++
T Consensus 174 ---------------------------------------------------------------~l~~----------~l~ 180 (319)
T cd00814 174 ---------------------------------------------------------------WLKE----------GLK 180 (319)
T ss_pred ---------------------------------------------------------------HHhC----------CCc
Confidence 2221 268
Q ss_pred Ceeecccc-ccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCcC
Q 002411 492 DWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTMP 570 (926)
Q Consensus 492 DW~ISRQR-~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD 570 (926)
|||||||+ .||+|+|. +. ..|++
T Consensus 181 d~~isR~~~~WGipvp~----~~----------------------------------------------------~~~~y 204 (319)
T cd00814 181 DLSITRDLFDWGIPVPL----DP----------------------------------------------------GKVIY 204 (319)
T ss_pred ccCCCccCcccCeeCCC----CC----------------------------------------------------CcEEE
Confidence 99999999 99999996 10 12678
Q ss_pred ccccccchhhhhcC-CCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccccccc
Q 002411 571 QWAGSCWYYLRFMD-PKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGE 649 (926)
Q Consensus 571 ~WfdSsw~~l~~~~-p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~ 649 (926)
||||+.+.|+.... +...... +..+.. ..|.|+|+.|+|++.+|.+ +|.+++ .+
T Consensus 205 vWfda~~~y~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~G~D~~~fh~~---~~pa~l-------------------~~- 259 (319)
T cd00814 205 VWFDALIGYISATGYYNEEWGN-SWWWKD-GWPELVHFIGKDIIRFHAI---YWPAML-------------------LG- 259 (319)
T ss_pred EehhhHHHHHHHcccccccccc-hhhhhc-CCCceEEEEeechhhhhHH---HHHHHH-------------------Hh-
Confidence 99999888775432 2111100 011112 3599999999999988854 454321 11
Q ss_pred ccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcC
Q 002411 650 YEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTW 722 (926)
Q Consensus 650 ~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~ 722 (926)
.+..|++.++. |||++.+ |+|||||+||+|+|.+++++||+|++|||++..++..++.+|
T Consensus 260 --~~~~~~~~~~~--~~~~~~~---------g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~f 319 (319)
T cd00814 260 --AGLPLPTRIVA--HGYLTVE---------GKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSDF 319 (319)
T ss_pred --CCCCCCcEeee--eeeEEEC---------CeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCC
Confidence 12455677776 7999987 899999999999999999999999999999999888877654
No 44
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=1.4e-55 Score=498.81 Aligned_cols=340 Identities=31% Similarity=0.520 Sum_probs=258.7
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
|||+.++|||||. |||||+..++.+|+++||+||+|++|+++.|+|+||++|+.+|.++|.+|+++++++.+.|+++++
T Consensus 1 ~~ITt~~pY~Ng~-lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 1 FYITTPIPYPNGD-LHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEEETSSS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCC-CCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCc-------------cccCC
Q 002411 176 SLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGV-------------SERGG 242 (926)
Q Consensus 176 ~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~-------------~~~~~ 242 (926)
++||++| ++.+|+++.|.++|+++|.+|+++|+||+++..++||+.|++.|++.+|+ |. |+.||
T Consensus 80 ~~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~-g~CP~C~~~~a~g~~Ce~cG 156 (391)
T PF09334_consen 80 ALNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE-GTCPYCGSDKARGDQCENCG 156 (391)
T ss_dssp HTT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-CEETTT--SSCTTTEETTTS
T ss_pred HcCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-ccccCcCccccCCCcccCCC
Confidence 9999998 89999999999999999999999999999999999999999999998885 33 34555
Q ss_pred CCe-----------------EEeeccccchhhhhhHHHHhhccCCCC--CcHHHHHHHHhhhccCCCceEEEEeecCCCC
Q 002411 243 HPV-----------------IRKPMRQWMLKITEYADRLLDDLDDLD--WPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ 303 (926)
Q Consensus 243 ~~~-----------------~~~~~~~~~l~l~~y~~~l~~~l~~~~--~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~ 303 (926)
.++ +.+++++|||+|++|++.|.+++++.. ||+.++++.++|+
T Consensus 157 ~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l------------------ 218 (391)
T PF09334_consen 157 RPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWL------------------ 218 (391)
T ss_dssp SBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHH------------------
T ss_pred CCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHh------------------
Confidence 555 488899999999999999998876543 5555555444432
Q ss_pred ccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCC
Q 002411 304 ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383 (926)
Q Consensus 304 ~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~ 383 (926)
T Consensus 219 -------------------------------------------------------------------------------- 218 (391)
T PF09334_consen 219 -------------------------------------------------------------------------------- 218 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCC
Q 002411 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGL 463 (926)
Q Consensus 384 ~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl 463 (926)
T Consensus 219 -------------------------------------------------------------------------------- 218 (391)
T PF09334_consen 219 -------------------------------------------------------------------------------- 218 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCC
Q 002411 464 SCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPP 543 (926)
Q Consensus 464 ~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~ 543 (926)
.+ .|+||||||.-.||+|+|- +.+
T Consensus 219 -------------~~----------~L~d~~Is~~~~WGI~vP~----~~~----------------------------- 242 (391)
T PF09334_consen 219 -------------KE----------GLPDLSISRPLDWGIPVPG----DPG----------------------------- 242 (391)
T ss_dssp -------------HT--------------EE-ECTTSSSEEETT----EEE-----------------------------
T ss_pred -------------hc----------ccCceeeecCCCCcceeec----cCC-----------------------------
Confidence 10 2689999999999999992 111
Q ss_pred ccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcC-C---CceeeecccchhhhhHHH
Q 002411 544 LSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYW-S---PVDVYVGGAEHAVLHLLY 619 (926)
Q Consensus 544 l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w-~---PvDl~v~G~D~~~~HLly 619 (926)
-|+.||||..+.|+....-......-.....++| . +--+|+-|+|++.+|.+|
T Consensus 243 -----------------------~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~ 299 (391)
T PF09334_consen 243 -----------------------QVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIY 299 (391)
T ss_dssp -----------------------EEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTH
T ss_pred -----------------------ceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHH
Confidence 2667999998888765432211101112334666 1 122899999999999654
Q ss_pred hhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhh
Q 002411 620 ARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT 699 (926)
Q Consensus 620 ~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~ 699 (926)
|.+++ ++ ....+| +.+++ |||++.+ |+|||||+||+|+|.++++
T Consensus 300 ---~pa~l-------------------~a--~~~~lP-~~i~~--~~~~~~~---------g~K~SkS~gn~i~~~~~~~ 343 (391)
T PF09334_consen 300 ---WPAML-------------------LA--AGLPLP-RRIVV--HGFLTLD---------GEKMSKSRGNVIWPDDLLE 343 (391)
T ss_dssp ---HHHHH-------------------HH--CTB----SEEEE--E--EEET---------TCCEETTTTESSBHHHHHH
T ss_pred ---hHHHH-------------------hc--ccCCCC-CEEEe--eeeEEEC---------CeeccccCCcccCHHHHHH
Confidence 54321 11 123345 56766 7899986 8999999999999999999
Q ss_pred hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH
Q 002411 700 EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 732 (926)
Q Consensus 700 ~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r 732 (926)
+||+|++||||+..+|..++.+|+++.+....+
T Consensus 344 ~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n 376 (391)
T PF09334_consen 344 EYGADALRYYLAREGPEGQDSDFSWEDFIERVN 376 (391)
T ss_dssp HH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHH
T ss_pred hCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999888876553
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-42 Score=401.64 Aligned_cols=352 Identities=21% Similarity=0.266 Sum_probs=263.8
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.++.++|+| .|+|+|. +||||+++|+..|+++||+|++||+|.|++|+|++|.+|..+|.+.|.+|+++++++++.|
T Consensus 21 ~~~v~~yvc--gPtvy~~-~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f 97 (463)
T PRK00260 21 PGKVKMYVC--GPTVYDY-AHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAF 97 (463)
T ss_pred CCcceEEEe--CCccCCC-cccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456789988 7889998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCc-cccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEee
Q 002411 171 RTQLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249 (926)
Q Consensus 171 ~~~l~~lgi-~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~ 249 (926)
++++++||| ..||. ..++ .|...++.++.+|+++|++|++..+|+||+..-.- +| ..++..
T Consensus 98 ~~~~~~Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~-------yg--~ls~~~----- 159 (463)
T PRK00260 98 HEDMDALNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPD-------YG--KLSGRN----- 159 (463)
T ss_pred HHHHHHcCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccc-------cc--cCCCCC-----
Confidence 999999999 56753 2222 58888999999999999999999999999874210 11 000000
Q ss_pred ccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECC
Q 002411 250 MRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAP 329 (926)
Q Consensus 250 ~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p 329 (926)
+
T Consensus 160 ---------------------------~---------------------------------------------------- 160 (463)
T PRK00260 160 ---------------------------L---------------------------------------------------- 160 (463)
T ss_pred ---------------------------H----------------------------------------------------
Confidence 0
Q ss_pred CCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCC
Q 002411 330 EHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAH 409 (926)
Q Consensus 330 ~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah 409 (926)
+... .|.. ++ .+.+ -+
T Consensus 161 -----------------~~~~----------------------~~~~---------~~--------~~~~--------K~ 176 (463)
T PRK00260 161 -----------------DELQ----------------------AGAR---------VE--------VAEE--------KR 176 (463)
T ss_pred -----------------HHHh----------------------ccCc---------CC--------cccC--------CC
Confidence 0000 0000 00 0000 14
Q ss_pred ChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeee
Q 002411 410 DTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYK 489 (926)
Q Consensus 410 ~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~ 489 (926)
++.||.+||+... |.. .|-.
T Consensus 177 ~~~DF~Lwk~~~~-----------------------~~~-------------------------~w~s------------ 196 (463)
T PRK00260 177 DPLDFALWKAAKP-----------------------GEP-------------------------SWES------------ 196 (463)
T ss_pred CccccceecCCCC-----------------------CCC-------------------------CCCC------------
Confidence 6678888876321 000 0000
Q ss_pred cCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCc
Q 002411 490 LRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTM 569 (926)
Q Consensus 490 l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~m 569 (926)
-||.=-|-||. +|. ..
T Consensus 197 ----------~~g~grpgWhi-ecs-am---------------------------------------------------- 212 (463)
T PRK00260 197 ----------PWGKGRPGWHI-ECS-AM---------------------------------------------------- 212 (463)
T ss_pred ----------CCCCCCCChhH-HHH-HH----------------------------------------------------
Confidence 13333366665 221 00
Q ss_pred CccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccccccc
Q 002411 570 PQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGE 649 (926)
Q Consensus 570 D~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~ 649 (926)
+|.|+ --|+|+|.||+|++..|+ .++.++|+
T Consensus 213 ------~~~~l-------------------g~~~Dih~gG~DlifpHh------------------------~neiaqs~ 243 (463)
T PRK00260 213 ------STKYL-------------------GETFDIHGGGADLIFPHH------------------------ENEIAQSE 243 (463)
T ss_pred ------HHHhc-------------------CCCcceecCccccCCCch------------------------HhHHHHHH
Confidence 01111 138999999999974442 23335667
Q ss_pred ccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHH
Q 002411 650 YEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG 729 (926)
Q Consensus 650 ~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~ 729 (926)
++.+ .||.++++| +|++..+ |+|||||+||+|+|.+++++||+|++|||+++ ++++++++|+++.+.+
T Consensus 244 a~~g-~p~~~~w~H-~g~v~~~---------G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~-~~~~~~~~fs~~~l~~ 311 (463)
T PRK00260 244 AATG-KPFANYWMH-NGFVTVN---------GEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLS-AHYRSPLNFSEEALEQ 311 (463)
T ss_pred HhcC-CCcceEEEE-ccEEccC---------CCcccCcCCCCCCHHHHHHHcCchHhHHHHHh-CCCCCCCccCHHHHHH
Confidence 7777 899999998 5888765 89999999999999999999999999999995 6778999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhccc
Q 002411 730 VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKWE 804 (926)
Q Consensus 730 ~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~~l~~f~~~~~~~~ 804 (926)
+.++++++|+++.... ....+.+.+.+++.+++++.++|+ +|++++|++.|++|++.++++.
T Consensus 312 a~~~~~rl~~~~~~~~-------------~~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~ 374 (463)
T PRK00260 312 AKKALERLYNALAETA-------------LGEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRAL 374 (463)
T ss_pred HHHHHHHHHHHHHHhh-------------hccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 9999999999874321 012346677889999999999995 8999999999999999988754
No 46
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=2.4e-39 Score=384.71 Aligned_cols=374 Identities=15% Similarity=0.202 Sum_probs=267.9
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHH-HcCCcccccccccccChHHHHHHHHhCCC-chHHHHHHH
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTH-PKITTLRNI 167 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r-~~G~~V~~~~G~D~~Glpie~~a~~~g~~-~~~~~~~~~ 167 (926)
+.++-++|+| .|++++. +||||+|+|+..||+.||+| ..||+|.|++|+|++|.+|..+|.+.|++ +.++++++.
T Consensus 57 ~~~~v~~Y~C--GPTvYd~-~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~ 133 (651)
T PTZ00399 57 NGRQVRWYTC--GPTVYDS-SHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWE 133 (651)
T ss_pred CCCeeEEEEe--CCCccCC-cccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHH
Confidence 3456789998 5666687 99999999999999999999 99999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEE
Q 002411 168 NRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIR 247 (926)
Q Consensus 168 ~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~ 247 (926)
+.|.+++++|||..+ ..+.|. .+|...+..++.+|+++|++|.+...
T Consensus 134 ~~f~~d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gs------------------------------ 180 (651)
T PTZ00399 134 KEFFEDMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGS------------------------------ 180 (651)
T ss_pred HHHHHHHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCe------------------------------
Confidence 999999999999887 444444 79999999999999999999987433
Q ss_pred eeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEE
Q 002411 248 KPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVV 327 (926)
Q Consensus 248 ~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v 327 (926)
+||++++|.+. ..++ |. +
T Consensus 181 -----vyFd~~~f~~~-~~~Y----------------------------------------------------g~----L 198 (651)
T PTZ00399 181 -----VYFDVEAFRKA-GHVY----------------------------------------------------PK----L 198 (651)
T ss_pred -----EEEEchhcccc-hhhH----------------------------------------------------Hh----h
Confidence 35555555321 0000 00 1
Q ss_pred CCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCce-eec
Q 002411 328 APEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAI-MAV 406 (926)
Q Consensus 328 ~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V-~~~ 406 (926)
.|.... +. ..+..|.|.+ ...
T Consensus 199 ~p~~~~------------------------~~----------------------------------~~~~~g~~~l~~~~ 220 (651)
T PTZ00399 199 EPESVA------------------------DE----------------------------------DRIAEGEGALGKVS 220 (651)
T ss_pred ChhhcC------------------------CH----------------------------------HHHhcccCCccccC
Confidence 110000 00 0000011100 000
Q ss_pred -CCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee
Q 002411 407 -PAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (926)
Q Consensus 407 -Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~ 485 (926)
=..++.||.+|+... +.+
T Consensus 221 ~~Kr~~~DFaLWk~~k--------pge----------------------------------------------------- 239 (651)
T PTZ00399 221 GEKRSPNDFALWKASK--------PGE----------------------------------------------------- 239 (651)
T ss_pred cCCCCCccHHhhCCCC--------CCC-----------------------------------------------------
Confidence 124556777775421 000
Q ss_pred EeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCccc
Q 002411 486 VNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRE 565 (926)
Q Consensus 486 ~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re 565 (926)
..|- --||---|.||. +|. .
T Consensus 240 -----p~W~----SpwG~GrPGWHi-ECs-a------------------------------------------------- 259 (651)
T PTZ00399 240 -----PSWD----SPWGKGRPGWHI-ECS-A------------------------------------------------- 259 (651)
T ss_pred -----CCCC----CCCCCCCCCchH-HHH-H-------------------------------------------------
Confidence 0011 123433466665 231 1
Q ss_pred CCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccc
Q 002411 566 TSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTD 645 (926)
Q Consensus 566 ~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~ 645 (926)
+..+ -...|+|+|.||+|++ |++++|+.
T Consensus 260 -------------------------m~~~---~lg~~~DIh~gG~DL~------------------------FPHHeNEi 287 (651)
T PTZ00399 260 -------------------------MASN---ILGDPIDIHSGGIDLK------------------------FPHHDNEL 287 (651)
T ss_pred -------------------------HHHH---HcCCcceeeccCCCCC------------------------CCcchhHH
Confidence 0000 1124999999999995 67788888
Q ss_pred ccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCch
Q 002411 646 TLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS 725 (926)
Q Consensus 646 ~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~ 725 (926)
++|+++.+..||.++++| +|||..+ |+|||||+||+|+|.++|++||+|++|||+|+ ++++++++|+++
T Consensus 288 AQseA~~~~~~~v~y~~H-~G~L~i~---------G~KMSKSLGNfItp~dlLekygaDaLR~~lLs-~~~~~dldFS~e 356 (651)
T PTZ00399 288 AQSEAYFDKHQWVNYFLH-SGHLHIK---------GLKMSKSLKNFITIRQALSKYTARQIRLLFLL-HKWDKPMNYSDE 356 (651)
T ss_pred HHHHHhhCCCCCCcEEEE-EEEEEec---------cchhhhcCCCcccHHHHHHHcChHHHHHHHHh-cCCCCCCccCHH
Confidence 999999999999999997 5998876 89999999999999999999999999999995 588999999999
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhc
Q 002411 726 GIEGVHRFLGRMWRLIVGS--SLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEI-EGTRFNTGISAMMEFINAAYK 802 (926)
Q Consensus 726 ~i~~~~r~L~r~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f~~~~~~ 802 (926)
.+..+.+.++++++++... .+....... .......+.+++..++.+.+.+.++| ++|+++.|++.|++|++.+|.
T Consensus 357 ~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~--~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~~~N~ 434 (651)
T PTZ00399 357 SMDEAIEKDKVFFNFFANVKIKLRESELTS--PQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLISATNT 434 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc--cccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9998887766666554211 011000000 00112345677888999999999999 779999999999999999988
Q ss_pred ccc
Q 002411 803 WEK 805 (926)
Q Consensus 803 ~~~ 805 (926)
|..
T Consensus 435 yi~ 437 (651)
T PTZ00399 435 YLN 437 (651)
T ss_pred HHh
Confidence 763
No 47
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-39 Score=344.67 Aligned_cols=445 Identities=20% Similarity=0.341 Sum_probs=334.8
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhh-hhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~-~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
++..-+++++.||.|.. +|+|++-+ ...+||+|||.+.+|++.++++|+|++|..+|.+|.+.|..|++.++++...+
T Consensus 12 n~rnilitsalpyvnnv-phlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ih 90 (567)
T KOG1247|consen 12 NERNILITSALPYVNNV-PHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIH 90 (567)
T ss_pred Cccceeeecccceeccc-ccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhH
Confidence 45667899999999997 99999999 55599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCch-------------------
Q 002411 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE------------------- 231 (926)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~------------------- 231 (926)
+..+.-++|++| .+-+|+.+...+.+|.+|.+|+++|+.....-.+.||+.|++.|++.
T Consensus 91 k~vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqc 168 (567)
T KOG1247|consen 91 KVVYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQC 168 (567)
T ss_pred HHHHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhh
Confidence 999999999777 88899999999999999999999999999999999998888888665
Q ss_pred ----------hhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCC----CCcHHHHHHHHhhhccCCCceEEEEe
Q 002411 232 ----------EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDL----DWPESVKEMQRNWIGRSEGAEMDFRV 297 (926)
Q Consensus 232 ----------ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~----~~p~~~~~~~~~~i~~s~~~~v~f~~ 297 (926)
|+.+++|.+|...++.+...+.||.|.++.++|.++++.. +|..+
T Consensus 169 d~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~N--------------------- 227 (567)
T KOG1247|consen 169 DKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQN--------------------- 227 (567)
T ss_pred hhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccc---------------------
Confidence 4455667777777777888888888888877776654321 02111
Q ss_pred ecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEE
Q 002411 298 LDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYA 377 (926)
Q Consensus 298 ~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 377 (926)
T Consensus 228 -------------------------------------------------------------------------------- 227 (567)
T KOG1247|consen 228 -------------------------------------------------------------------------------- 227 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccc
Q 002411 378 RNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISG 457 (926)
Q Consensus 378 ~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~ 457 (926)
T Consensus 228 -------------------------------------------------------------------------------- 227 (567)
T KOG1247|consen 228 -------------------------------------------------------------------------------- 227 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCC
Q 002411 458 LDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (926)
Q Consensus 458 ~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~ 537 (926)
|......|++. .|+..||+|..-||+|+|. ++ |
T Consensus 228 ----------a~~it~sWlk~----------gl~pRCiTRDLkWGtpVPl---e~---------------------f--- 260 (567)
T KOG1247|consen 228 ----------AQNITRSWLKD----------GLKPRCITRDLKWGTPVPL---EK---------------------F--- 260 (567)
T ss_pred ----------hHHHHHHHHHc----------cccccccccccccCCCcCh---hh---------------------h---
Confidence 11122234432 3678899999999999997 21 1
Q ss_pred CCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCC---Cceee-ecccchh
Q 002411 538 GTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWS---PVDVY-VGGAEHA 613 (926)
Q Consensus 538 g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~---PvDl~-v~G~D~~ 613 (926)
+.-|+.||||....|+..+. ... ++++++|. .|++| .-|+|.+
T Consensus 261 ---------------------------k~KVfYVWFDA~IGYlsit~-----~yt-~ew~kWwknpE~v~LyqFmgKDNV 307 (567)
T KOG1247|consen 261 ---------------------------KDKVFYVWFDAPIGYLSITK-----NYT-DEWEKWWKNPENVELYQFMGKDNV 307 (567)
T ss_pred ---------------------------cccEEEEEEcCcceEEEeeh-----hhh-HHHHHHhcCHhhhhHHHHhccCCC
Confidence 11278899999888876542 122 34555554 36677 8999999
Q ss_pred hhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccC
Q 002411 614 VLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVN 693 (926)
Q Consensus 614 ~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~ 693 (926)
.+|.++ |+++. .+.....+.-+-+. .-.++.-+ ..|.|||+|-+|-
T Consensus 308 pFHtvi------------------FP~s~------lgt~en~t~v~~l~-aTeYLnyE---------~gKFSKSrgvGvF 353 (567)
T KOG1247|consen 308 PFHTVI------------------FPCSQ------LGTEENYTVVHHLS-ATEYLNYE---------DGKFSKSRGVGVF 353 (567)
T ss_pred cceeee------------------cchhh------hcCCCCchhheeec-hhhhhccc---------cCccccccccccc
Confidence 888432 22211 01111111111010 01333334 4799999999999
Q ss_pred cchhhhh-cCchhhhHHhhhcCCcCCCCcCCchhhH---------HHHHHHHHHHHHHhcCCCCCCCCCCCccc--CCCC
Q 002411 694 PDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIE---------GVHRFLGRMWRLIVGSSLPDGTFKGGTVV--NDEE 761 (926)
Q Consensus 694 p~eii~~-yGaD~lRl~ll~~~~~~~~~~~~~~~i~---------~~~r~L~r~~~~~~~~~~~~~~~~~~~~~--~~~~ 761 (926)
-.++-+. .++|+.||||++..|...|..|+++.+. ...+|++|+..|+... |+ +.++ ....
T Consensus 354 G~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~------~~-g~Vp~~~~~~ 426 (567)
T KOG1247|consen 354 GNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAK------YN-GVVPEMELTS 426 (567)
T ss_pred ccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh------hC-CcccceeecC
Confidence 9988874 8999999999999998888888866543 3346777777776321 11 1111 1223
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc--------------------hHHHHHHHHHHhhch
Q 002411 762 PTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH--------------------PRKIIEPFILLLAPY 821 (926)
Q Consensus 762 ~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~--------------------~~~~l~~l~~lLaP~ 821 (926)
-+..+++.++.+..+..++||.-+++.|++.+|+.....|.|.+. ...++..+..||+||
T Consensus 427 ~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll~P~ 506 (567)
T KOG1247|consen 427 GDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLLYPY 506 (567)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHhccc
Confidence 367789999999999999999999999999999999887765321 125778888999999
Q ss_pred hhHHHHHHHHHcCCCCCccc
Q 002411 822 APHMSEELWFRLGHSNSLAY 841 (926)
Q Consensus 822 ~P~~aEelw~~L~~~~sv~~ 841 (926)
||.++.+|..+|+.+...+.
T Consensus 507 mP~~s~~I~kqlnlp~~~~~ 526 (567)
T KOG1247|consen 507 MPTTSAEILKQLNLPETLFP 526 (567)
T ss_pred cccchHHHHHHhCCccccCC
Confidence 99999999999987654443
No 48
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=6.4e-39 Score=370.35 Aligned_cols=130 Identities=22% Similarity=0.152 Sum_probs=118.9
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (926)
+.++.++|+| .||||+. +||||+++++..|+++||+|++||+|.+++|+|+||.+|..+|.+.|++|.++++.+++.
T Consensus 18 ~~~~v~~yvc--gptvy~~-~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~ 94 (465)
T TIGR00435 18 VQGKVKMYVC--GPTVYDY-CHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEA 94 (465)
T ss_pred CCCcceEEEe--cCccCCC-cccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3467889998 6799998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEec-cCccccCCCC
Q 002411 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPALG 225 (926)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~-~~v~wc~~~~ 225 (926)
|.+++++|||++|+-....| .|...+++++.+|+++|++|.+. ..|+||+.|-
T Consensus 95 f~~dl~~LgI~~d~~~~raT---~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 95 YFEDMKALNVLPPDLEPRAT---EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred HHHHHHHhCCCCCcCCcccc---ccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 99999999999985323222 78999999999999999999998 9999998873
No 49
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-38 Score=367.12 Aligned_cols=351 Identities=17% Similarity=0.191 Sum_probs=262.6
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.++-+.|+| .|++.+. +||||+|+++..|+++||+|++||+|.|++|+|+||.+|.++|.+.|.++.++++++++.|
T Consensus 246 ~~~V~mYvC--GPTVYd~-~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F 322 (699)
T PRK14535 246 PENVRMYVC--GMTVYDY-CHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAM 322 (699)
T ss_pred CCceEEEec--CCcCCCC-CcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455678887 7999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEec-cCccccCCCCcccCchhhccCccccCCCCeEEee
Q 002411 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPALGTVLANEEVVDGVSERGGHPVIRKP 249 (926)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~-~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~ 249 (926)
.+++++|||..+ . +.|...+|...++.++.+|.++|++|++. ..|+||..+-. .+| ..++..
T Consensus 323 ~~d~~~LnI~~p--~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~-------~YG--~LS~~~----- 385 (699)
T PRK14535 323 HEDADALGVLRP--D-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFA-------AYG--QLSGKS----- 385 (699)
T ss_pred HHHHHHcCCCCC--c-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccccc-------ccc--cccCCC-----
Confidence 999999999988 3 57777899999999999999999999874 47999876421 011 000000
Q ss_pred ccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECC
Q 002411 250 MRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAP 329 (926)
Q Consensus 250 ~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p 329 (926)
+..+
T Consensus 386 ---------------------------~~~l------------------------------------------------- 389 (699)
T PRK14535 386 ---------------------------LDDL------------------------------------------------- 389 (699)
T ss_pred ---------------------------hHHh-------------------------------------------------
Confidence 0000
Q ss_pred CCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCC
Q 002411 330 EHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAH 409 (926)
Q Consensus 330 ~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah 409 (926)
..|..+. .+. =-.
T Consensus 390 ------------------------------------------~~g~rve-----------------~d~--------~Kr 402 (699)
T PRK14535 390 ------------------------------------------RAGERVE-----------------VDG--------FKR 402 (699)
T ss_pred ------------------------------------------cCCCccc-----------------ccc--------ccC
Confidence 0000000 000 014
Q ss_pred ChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeee
Q 002411 410 DTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYK 489 (926)
Q Consensus 410 ~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~ 489 (926)
++.||.+||... + |-. .|-.
T Consensus 403 np~DFaLWK~sk--------~---------------Gep-------------------------~W~S------------ 422 (699)
T PRK14535 403 DPLDFVLWKAAK--------A---------------GEP-------------------------AWES------------ 422 (699)
T ss_pred CccccceeccCC--------C---------------CCC-------------------------CccC------------
Confidence 567888887632 0 000 0111
Q ss_pred cCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCc
Q 002411 490 LRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTM 569 (926)
Q Consensus 490 l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~m 569 (926)
-||-=-|-||. +|. .. +
T Consensus 423 ----------PWG~GRPGWHI-ECS-AM--s------------------------------------------------- 439 (699)
T PRK14535 423 ----------PWGNGRPGWHI-ECS-AM--S------------------------------------------------- 439 (699)
T ss_pred ----------CCCCCCCchHH-HHH-HH--H-------------------------------------------------
Confidence 14444488776 331 00 0
Q ss_pred CccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccccccc
Q 002411 570 PQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGE 649 (926)
Q Consensus 570 D~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~ 649 (926)
..|+ --++|+|.||+|++ |+|+.++..+|+
T Consensus 440 ----------~~~L----------------G~~~DIHgGG~DLi------------------------FPHHENEiAQse 469 (699)
T PRK14535 440 ----------ENLF----------------GDTFDIHGGGADLQ------------------------FPHHENEIAQSV 469 (699)
T ss_pred ----------HHHc----------------CCcceeECCccccC------------------------CCCCccHHHHHH
Confidence 0000 02689999999995 567788888888
Q ss_pred ccccCC---------------CcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcC
Q 002411 650 YEQESI---------------PEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMG 714 (926)
Q Consensus 650 ~~~~~~---------------P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~ 714 (926)
++.+.. ||.+.|+| +|||+.+ |+|||||+||+++|.+++++||+|++|||+++ +
T Consensus 470 A~~g~~~~~~~~~~~~~~~~~~~aryWmH-nG~V~vd---------GeKMSKSLGN~it~~dlLe~ygpdalRl~lLs-s 538 (699)
T PRK14535 470 GATGHTCGHHHAQTHHGQSIASHVKYWLH-NGFIRVD---------GEKMSKSLGNFFTIREVLKQYDPEVVRFFILR-A 538 (699)
T ss_pred HhhCCCcccccccccccccccccccEEEE-CCeEeeC---------CCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc-C
Confidence 876652 68899999 7999865 89999999999999999999999999999996 6
Q ss_pred CcCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHH
Q 002411 715 PFRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAM 793 (926)
Q Consensus 715 ~~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~~l 793 (926)
+++++++|+++.++++.+.++|+++++.... . . .. .....+..+.+.+.++|+ +++++.|++.|
T Consensus 539 hYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~----~-----~--~~----~~~~~l~~~~~~f~~AL~DDlntp~Ala~L 603 (699)
T PRK14535 539 HYRSPLNYSDAHLDDAKGALTRLYTTLKNTP----A-----A--EF----MLSENVNDYTRRFYAAMNDDFGTVEAVAVL 603 (699)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHhhh----h-----c--cc----hhhhhHHHHHHHHHHHHhhccChHHHHHHH
Confidence 7899999999999999999999998874310 0 0 00 011234566788999995 69999999999
Q ss_pred HHHHHHHhcc
Q 002411 794 MEFINAAYKW 803 (926)
Q Consensus 794 ~~f~~~~~~~ 803 (926)
++++..+|+.
T Consensus 604 ~~lvk~iN~~ 613 (699)
T PRK14535 604 FELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 50
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-38 Score=353.35 Aligned_cols=124 Identities=23% Similarity=0.250 Sum_probs=111.3
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+-++|+| .|+|.+. +||||+|+++..|+++||+|++|++|.|++|+|+||.+|..+|.+.|++|+++++++++.|.+
T Consensus 9 ~v~~YvC--GpTvY~~-~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~ 85 (384)
T PRK12418 9 TATMYVC--GITPYDA-THLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRE 85 (384)
T ss_pred eeEEEec--CCCCCCC-CccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5678888 4556687 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCc-cccccCccccCChhHHHHHHHHHHHHhhCCcEEEecc----CccccCC
Q 002411 173 QLKSLGF-SYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV----PVNWCPA 223 (926)
Q Consensus 173 ~l~~lgi-~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~----~v~wc~~ 223 (926)
++++||| ..| .+.+|++ +.+.++.++.+|.++|++|+... .|+|+..
T Consensus 86 d~~~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~ 137 (384)
T PRK12418 86 DMEALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVD 137 (384)
T ss_pred HHHHhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecC
Confidence 9999997 555 6667766 48999999999999999999877 5776543
No 51
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=3.6e-38 Score=363.57 Aligned_cols=128 Identities=20% Similarity=0.186 Sum_probs=120.1
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (926)
+.++-+.|+| .|++++. +||||+|+++..|+++||+|+.||+|.|++|+|+||.+|..+|.+.|++|.++++++++.
T Consensus 77 ~~~~v~~Y~C--GpTvYd~-~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~ 153 (557)
T PLN02946 77 VEGKVGMYVC--GVTAYDL-SHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEE 153 (557)
T ss_pred CCCceeEEEe--CCccCCC-CccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566788888 7999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCC
Q 002411 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPA 223 (926)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~ 223 (926)
|.+++++|||. + ..+.|...+|...++.++.+|+++|++|.+...|+||..
T Consensus 154 f~~d~~~LnI~-~--p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~ 204 (557)
T PLN02946 154 FLSDMAYLHCL-P--PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVD 204 (557)
T ss_pred HHHHHHHCCCC-C--CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecC
Confidence 99999999997 3 577888899999999999999999999999999999865
No 52
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=5.1e-38 Score=350.75 Aligned_cols=124 Identities=23% Similarity=0.266 Sum_probs=109.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
++-++|+|.+. |.+. +||||+|+++..|+++||+|++||+|.|++|+|+||.+|.++|.++|++|+++++++++.|.
T Consensus 35 ~~v~~YvCGpT--vY~~-~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~ 111 (411)
T TIGR03447 35 PEAGMYVCGIT--PYDA-THLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFR 111 (411)
T ss_pred CcceEEEeCCc--cCCC-cccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45778998544 4577 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcc-ccccCccccCChhHHHHHHHHHHHHhhCCcEEEecc----CccccC
Q 002411 172 TQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV----PVNWCP 222 (926)
Q Consensus 172 ~~l~~lgi~-~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~----~v~wc~ 222 (926)
+++++|||. +| .+.+|++. .+.++.++.+|+++|+||.... .|+|+.
T Consensus 112 ~d~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv 163 (411)
T TIGR03447 112 EDMEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSI 163 (411)
T ss_pred HHHHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEec
Confidence 999999986 44 56666555 7899999999999999998764 466553
No 53
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-37 Score=350.09 Aligned_cols=367 Identities=15% Similarity=0.186 Sum_probs=264.1
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc----------cccccChHHHHHHHHhCCCc
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM----------GWDAFGLPAEQYAIETGTHP 159 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~----------G~D~~Glpie~~a~~~g~~~ 159 (926)
+.++-+.|+| .||+++. +||||+|+++..|+++||+|+.||+|.|++ |.|+||.+|..+|.+.|.+|
T Consensus 20 ~~~~v~mYvC--GpTvy~~-~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~ 96 (490)
T PRK14536 20 EHGHVRLYGC--GPTVYNY-AHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSV 96 (490)
T ss_pred CCCceEEEee--CCccCCC-cccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCH
Confidence 3456678888 7999998 999999999999999999999999999997 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccc
Q 002411 160 KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSE 239 (926)
Q Consensus 160 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~ 239 (926)
.++++++++.|.+++++|||..+ . +.|..++|...++.++.+|+++|++|.+...|+||+.- ++
T Consensus 97 ~e~a~~~~~~f~~d~~~Lni~~~--~-~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~-------------~~ 160 (490)
T PRK14536 97 LEIAAHYTAAFFRDTARLNIERP--S-IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT-------------FP 160 (490)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC--c-eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc-------------cc
Confidence 99999999999999999999886 3 34777999999999999999999999999999999731 01
Q ss_pred cCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccc
Q 002411 240 RGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTI 319 (926)
Q Consensus 240 ~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl 319 (926)
.+|. | .+.
T Consensus 161 ~YG~--------------------L------------------------------------s~~---------------- 168 (490)
T PRK14536 161 SYGS--------------------L------------------------------------ASA---------------- 168 (490)
T ss_pred chhh--------------------h------------------------------------cCC----------------
Confidence 0110 0 000
Q ss_pred cCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCC
Q 002411 320 FGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYG 399 (926)
Q Consensus 320 ~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~G 399 (926)
. +++.. .|..+..- ..
T Consensus 169 -----------~--------------~~~l~----------------------~g~~v~~~-~~---------------- 184 (490)
T PRK14536 169 -----------A--------------VEDLQ----------------------AGARIEHD-TN---------------- 184 (490)
T ss_pred -----------C--------------HHHhh----------------------cCCcCCCC-CC----------------
Confidence 0 00000 00000000 00
Q ss_pred CCceeecCCCChhhHHHHHHc-CCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHH
Q 002411 400 TGAIMAVPAHDTRDHEFALKF-DISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEK 478 (926)
Q Consensus 400 TG~V~~~Pah~~~D~~~~~k~-~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~ 478 (926)
-.++.||.+|++. +++
T Consensus 185 --------K~np~DFaLWK~~~~~~------------------------------------------------------- 201 (490)
T PRK14536 185 --------KRNPHDFVLWFTRSKFE------------------------------------------------------- 201 (490)
T ss_pred --------CCCchhchhcccccCCC-------------------------------------------------------
Confidence 1356788888752 111
Q ss_pred cCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCC
Q 002411 479 TGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSS 558 (926)
Q Consensus 479 ~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~ 558 (926)
+..+++.--||..-|-||. +|. .. +
T Consensus 202 -------------~~~~~W~SpWG~GRPGWHI-ECs-aM--s-------------------------------------- 226 (490)
T PRK14536 202 -------------NHALTWDSPWGRGYPGWHI-ECS-AM--S-------------------------------------- 226 (490)
T ss_pred -------------CCCCcccCCCCCCCCChHH-HHH-HH--H--------------------------------------
Confidence 0011233458888899987 341 00 0
Q ss_pred CCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCc
Q 002411 559 GKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSY 638 (926)
Q Consensus 559 g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~ 638 (926)
..|+. -.+|+|.||+|++ |
T Consensus 227 ---------------------~~~lg----------------~~~DIH~GG~Dli------------------------F 245 (490)
T PRK14536 227 ---------------------MKYLG----------------EQCDIHIGGVDHI------------------------R 245 (490)
T ss_pred ---------------------HHHcC----------------CceeEEeccccCC------------------------C
Confidence 00000 1579999999995 4
Q ss_pred cccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcCCcC
Q 002411 639 ISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGPFR 717 (926)
Q Consensus 639 ~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~~~~ 717 (926)
+|+.++..+++++.+. |+.++++| +|+++.+ |+|||||+||+|++.+++++ |+++++||++++ ++++
T Consensus 246 PHHeneiAqs~a~~g~-~~~~~w~h-~g~l~~~---------g~KMSKSlGN~itl~dll~~g~~~~alR~~lls-~~yr 313 (490)
T PRK14536 246 VHHTNEIAQCEAATGK-PWVRYWLH-HEFLLMN---------KGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLG-GHYR 313 (490)
T ss_pred cchhhHHHHHHHhcCC-CcceEEEE-cCEEeec---------CccccccCCCcccHHHHHhcCCCHHHHHHHHHh-CCCC
Confidence 4556667788888775 89999998 6888876 89999999999999999998 999999999985 7789
Q ss_pred CCCcCCchhhHHHHHHHHHHHHHHhcCC--CCCCCCC-CCcccCC-C-CchHHHHHHHHHHHHHHHHHHh-cccHHHHHH
Q 002411 718 DSKTWNTSGIEGVHRFLGRMWRLIVGSS--LPDGTFK-GGTVVND-E-EPTLEQLCTLHKCIAKVTEEIE-GTRFNTGIS 791 (926)
Q Consensus 718 ~~~~~~~~~i~~~~r~L~r~~~~~~~~~--~~~~~~~-~~~~~~~-~-~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~ 791 (926)
.+++|+++.+..+.+.+.|+.+++.... ....... ....... . .........+..+..++.++|+ +++++.|++
T Consensus 314 ~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~ 393 (490)
T PRK14536 314 SQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALS 393 (490)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHH
Confidence 9999999999999998888887663211 0000000 0000000 0 0001111234567788999995 699999999
Q ss_pred HHHHHHHHHhc
Q 002411 792 AMMEFINAAYK 802 (926)
Q Consensus 792 ~l~~f~~~~~~ 802 (926)
.|++++...|.
T Consensus 394 ~l~~~~~~~n~ 404 (490)
T PRK14536 394 ELQKLVKDTSV 404 (490)
T ss_pred HHHHHHHHhhh
Confidence 99999988774
No 54
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=100.00 E-value=1.6e-37 Score=311.46 Aligned_cols=183 Identities=50% Similarity=0.902 Sum_probs=138.5
Q ss_pred HhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhH
Q 002411 282 RNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLER 361 (926)
Q Consensus 282 ~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 361 (926)
|||||||+|+.|+|++.+. +..|.|||||||||+|+++|+++|+||++..+. +.+..+.+|++.+...+..++
T Consensus 1 rNWIGkS~G~~i~F~i~~~-----~~~i~vFTTrpdTifGvtfials~~H~lv~~l~--~~~~~l~~fi~~~~~~~~~~~ 73 (185)
T PF13603_consen 1 RNWIGKSEGAEIDFKIKGS-----NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLA--ENNPELQEFIEKCKKIKNSER 73 (185)
T ss_dssp HHHH-EEEEEEEEEEBTTS-----SCEEEEEES-GGGGGG--EEEEETTSCHHHHCT--TTHHHHHHHHHHHHTS-HHHH
T ss_pred CCCcCCcccEEEEEEecCC-----CCEEEEEECCcchhhCceEEEECCCCHHHHhhh--hhhhhHHHHHHHHhcCCHhHh
Confidence 6999999999999999542 358999999999999999999999999988773 456677889888877766665
Q ss_pred hHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCC--Ccccc
Q 002411 362 TELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES--SSQSE 439 (926)
Q Consensus 362 ~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~--~~~~~ 439 (926)
......+.|.++|.+++||++++++|||+++||+++||||+||+|||||++||+||++||||+..|+.+.+.. .....
T Consensus 74 ~~~~~~k~Gv~tg~~aihP~t~~~iPI~va~yVl~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~ 153 (185)
T PF13603_consen 74 NKDFKEKEGVFTGLYAIHPLTGKKIPIYVANYVLMDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQ 153 (185)
T ss_dssp HHCSSS--EEEEEEEEE-TTTS-EEEEEEETTS-TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTS
T ss_pred hhhccccccCcCCCEEECCCCCCCccEEEECceeecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccc
Confidence 5555678899999999999999999999999999999999999999999999999999999999999887543 23356
Q ss_pred cccccCceEeccCCcccccccCCCCHHHHHHHHHHHHH
Q 002411 440 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAE 477 (926)
Q Consensus 440 ~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~ 477 (926)
.+|.++|+|+||+. |+||+.++|+++|+++|+
T Consensus 154 ~~~~~~G~l~nS~~------f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 154 EAYTGDGILINSGE------FNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp S---S--EE-SSGG------GTTSBHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCC------CCCCCHHHHHHHHHHHhC
Confidence 78999999999864 999999999999999985
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.8e-34 Score=323.57 Aligned_cols=127 Identities=21% Similarity=0.160 Sum_probs=115.6
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccc---------cccc-cccChHHHHHHHHhCCCchH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLH---------PMGW-DAFGLPAEQYAIETGTHPKI 161 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~---------~~G~-D~~Glpie~~a~~~g~~~~~ 161 (926)
++-+.|+| .|++... +||||+|+++..|+++||+|++||+|.| ++|. |+||.+|.++|.+.|.++.+
T Consensus 20 ~~v~mY~C--GpTVYd~-~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e 96 (481)
T PRK14534 20 SDVKVYAC--GPTVYNY-AHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYE 96 (481)
T ss_pred CceEEEeC--CCCCCCC-CCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHH
Confidence 35567887 7999998 9999999999999999999999999999 6777 66678899999999999999
Q ss_pred HHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCC
Q 002411 162 TTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (926)
Q Consensus 162 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~ 224 (926)
+++++++.|.+++++|||..| ..+.| .++|.+.++.++.+|.++|++|.....|+||+.+
T Consensus 97 ~a~~~~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 97 ISRFFTEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 999999999999999999988 55555 5799999999999999999999999999999876
No 56
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-34 Score=317.68 Aligned_cols=352 Identities=21% Similarity=0.303 Sum_probs=260.3
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (926)
..++-+.|+| .|+++.. .||||+|+++..|++.||++..||.|.|+..+.+-..+|..+|.+.|.++.++++++++.
T Consensus 19 ~~~~V~mYvC--GpTVYd~-~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~ 95 (464)
T COG0215 19 DPGKVKMYVC--GPTVYDY-AHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAA 95 (464)
T ss_pred CCCeEEEEec--CCccCCc-cccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3455788998 7999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccc-cccCccccCChhHHHHHHHHHHHHhhCCcEEEe-ccCccccCCCCcccCchhhccCccccCCCCeEE
Q 002411 170 FRTQLKSLGFSY-DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALGTVLANEEVVDGVSERGGHPVIR 247 (926)
Q Consensus 170 ~~~~l~~lgi~~-Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~-~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~ 247 (926)
|.+++.+|||.- | ..+..| +|...+..+..+|.++|++|.. ...|+|+.+.-. .+| ..++.
T Consensus 96 f~~D~~aL~v~~p~-~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~-------~YG--~LS~~---- 158 (464)
T COG0215 96 FFEDMDALNVLPPD-IEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK-------DYG--KLSGR---- 158 (464)
T ss_pred HHHHHHHhCCCCCc-ccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEecccch-------hhH--hhcCC----
Confidence 999999999953 4 234444 9999999999999999999998 467887654311 000 00000
Q ss_pred eeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEE
Q 002411 248 KPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVV 327 (926)
Q Consensus 248 ~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v 327 (926)
T Consensus 159 -------------------------------------------------------------------------------- 158 (464)
T COG0215 159 -------------------------------------------------------------------------------- 158 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecC
Q 002411 328 APEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVP 407 (926)
Q Consensus 328 ~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P 407 (926)
..+++.. .|..+.. ...
T Consensus 159 ----------------~~le~l~----------------------~gar~~~-~~~------------------------ 175 (464)
T COG0215 159 ----------------DSLEELQ----------------------AGARVEV-DEE------------------------ 175 (464)
T ss_pred ----------------CChhHHh----------------------hcccccc-ccc------------------------
Confidence 0000000 0000000 000
Q ss_pred CCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEe
Q 002411 408 AHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 487 (926)
Q Consensus 408 ah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~ 487 (926)
-.+|.||.+||..+ +. ++. |=..
T Consensus 176 Krnp~DFvLWK~sk--------~g-------Ep~---------------------------------W~SP--------- 198 (464)
T COG0215 176 KRNPLDFVLWKAAK--------PG-------EPS---------------------------------WDSP--------- 198 (464)
T ss_pred cCCchhheeeccCC--------CC-------CCC---------------------------------CCCC---------
Confidence 13566888887632 00 000 1112
Q ss_pred eecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCC
Q 002411 488 YKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETS 567 (926)
Q Consensus 488 ~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d 567 (926)
||.==|.||. +|. .. +.
T Consensus 199 -------------WG~GRPGWHI-ECS-aM--~~---------------------------------------------- 215 (464)
T COG0215 199 -------------WGKGRPGWHI-ECS-AM--ST---------------------------------------------- 215 (464)
T ss_pred -------------CCCCCCchhH-HHH-HH--HH----------------------------------------------
Confidence 3333388887 342 10 00
Q ss_pred CcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccccc
Q 002411 568 TMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTL 647 (926)
Q Consensus 568 ~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~ 647 (926)
.|+. -..|+|.||+|++ |+|+.|+..+
T Consensus 216 -------------~~LG----------------~~~DIHgGG~DLi------------------------FPHHENEiAQ 242 (464)
T COG0215 216 -------------KYLG----------------ETFDIHGGGSDLI------------------------FPHHENEIAQ 242 (464)
T ss_pred -------------HHhC----------------CCcceecCccccc------------------------CCCcccHHHH
Confidence 0000 2579999999996 6788999999
Q ss_pred ccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhh
Q 002411 648 GEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGI 727 (926)
Q Consensus 648 s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i 727 (926)
|++..+..||.++|+| +|||..+ |+|||||+||+++..|++++|++.+|||+++ +++++.+++||++.+
T Consensus 243 sea~~g~~~~a~yWmH-~G~l~i~---------geKMSKSLGNfiti~d~l~~~~p~~lR~~ll-s~HYR~pl~fsee~L 311 (464)
T COG0215 243 SEAATGVKPFAKYWMH-NGFLNID---------GEKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELL 311 (464)
T ss_pred HHhhhCCCcceeEeEE-cceeeec---------CcCcccccCCeeEHHHHHhhcCHHHHHHHHH-HHHhCCccccCHHHH
Confidence 9999999999999999 7999987 8999999999999999999999999999998 567799999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhc
Q 002411 728 EGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYK 802 (926)
Q Consensus 728 ~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~~l~~f~~~~~~ 802 (926)
+.+.+.+.|+.+++..... .. .... .........++.++|+ +|++..|++.|.+++...+.
T Consensus 312 ~~A~~~l~rl~~~~~~~~~----~~-----~~~~-----~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~ 373 (464)
T COG0215 312 EEAKKALERLYNALRRLRD----LA-----GDAE-----LADLKEFEARFREALDDDFNTPKALAVLFELAKEINR 373 (464)
T ss_pred HHHHHHHHHHHHHHHHHHh----hc-----cccc-----cchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh
Confidence 9999999999988742110 00 0000 0035566777899995 69999999999999987643
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=3.7e-30 Score=267.31 Aligned_cols=94 Identities=22% Similarity=0.162 Sum_probs=87.4
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.++.++|+| .|+|++. +||||+++++++|+++||+||+|++|++++|+|+||+||+.+|++.|.+|+++++++.+.|
T Consensus 18 ~~~~~~y~~--gpt~y~~-~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f 94 (213)
T cd00672 18 PGLVTMYVC--GPTVYDY-AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEF 94 (213)
T ss_pred CCCceEEEe--CCccCCC-cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467789998 5667787 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccc-cccCcccc
Q 002411 171 RTQLKSLGFSY-DWNREIST 189 (926)
Q Consensus 171 ~~~l~~lgi~~-Dw~~~~~T 189 (926)
++++++|||+. | .+.+|
T Consensus 95 ~~~~~~l~i~~~d--~~~rt 112 (213)
T cd00672 95 FEDMKALNVLPPD--VVPRV 112 (213)
T ss_pred HHHHHHcCCCCCC--cceee
Confidence 99999999988 5 66666
No 58
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=1.9e-31 Score=283.32 Aligned_cols=128 Identities=23% Similarity=0.242 Sum_probs=107.3
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (926)
+.++-++|+| .|++... +||||+|+++..|++.||++..||+|.++++..+...+|..+|.+.|.++.++++++.+.
T Consensus 5 ~~~~v~~Y~C--GPTVYd~-~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~ 81 (300)
T PF01406_consen 5 NPGKVRMYVC--GPTVYDY-AHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEE 81 (300)
T ss_dssp CTTEEEEEEE--EEBTTS---BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred CCCeEEEEcC--CCCCCCC-CCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHH
Confidence 3455678888 7899997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEec-cCccccCC
Q 002411 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAE-VPVNWCPA 223 (926)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~-~~v~wc~~ 223 (926)
|.++|++|||.-....+.. .+|...+..+..+|.++|++|... ..|+|+..
T Consensus 82 f~~dm~~Lnv~~p~~~pra---te~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 82 FFEDMKALNVLPPDHYPRA---TEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp HHHHHHHTT----SEEEEG---GGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred HHHHHHHcCCCCCccccch---hccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 9999999999876444444 489999999999999999999998 88887754
No 59
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-29 Score=276.02 Aligned_cols=365 Identities=19% Similarity=0.234 Sum_probs=261.9
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHH-HcCCcccccccccccChHHHHHHH--HhCCCchHHHH--
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAI--ETGTHPKITTL-- 164 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r-~~G~~V~~~~G~D~~Glpie~~a~--~~g~~~~~~~~-- 164 (926)
+.++-.+|+| .|+++.. -||||||+|+-.||+.|+++ .-||+|.|++++.+-...|...|. +.+..|..+.+
T Consensus 52 ~~~~v~wY~C--GpTvYD~-SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F 128 (586)
T KOG2007|consen 52 NGNKVTWYIC--GPTVYDS-SHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERF 128 (586)
T ss_pred CCCeEEEEEe--cCcccch-hhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHH
Confidence 4456789998 7999997 89999999999999999999 899999999999999999998885 24455544433
Q ss_pred -HHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCC
Q 002411 165 -RNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGH 243 (926)
Q Consensus 165 -~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~ 243 (926)
.+-+.|.++|.+|++... .+.|.-.+|...+..+..++.++|++|.-...|+|+..--.
T Consensus 129 ~~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~----------------- 188 (586)
T KOG2007|consen 129 CYYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP----------------- 188 (586)
T ss_pred HHHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc-----------------
Confidence 467999999999999764 46677789999999999999999999999888887653100
Q ss_pred CeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCc
Q 002411 244 PVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGAT 323 (926)
Q Consensus 244 ~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~ 323 (926)
T Consensus 189 -------------------------------------------------------------------------------- 188 (586)
T KOG2007|consen 189 -------------------------------------------------------------------------------- 188 (586)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCce
Q 002411 324 YLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAI 403 (926)
Q Consensus 324 ~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V 403 (926)
|.|.+.. + +.+ ......|++. .+++
T Consensus 189 -------~~YgKL~-G------------------~~~---~~~~gEg~l~-------ds~K------------------- 213 (586)
T KOG2007|consen 189 -------HSYGKLV-G------------------QRK---NLQEGEGVLS-------DSRK------------------- 213 (586)
T ss_pred -------chhhhhc-C------------------chh---hcccCcCccc-------cccC-------------------
Confidence 0110000 0 000 0000000100 0111
Q ss_pred eecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCc
Q 002411 404 MAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK 483 (926)
Q Consensus 404 ~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~ 483 (926)
-.+.||++|+.-+ . | ++- |-.
T Consensus 214 -----R~p~DFALWKAsK---------~-g-----EP~---------------------------------WeS------ 234 (586)
T KOG2007|consen 214 -----RSPADFALWKASK---------P-G-----EPS---------------------------------WES------ 234 (586)
T ss_pred -----CChhhhhhhhhcC---------C-C-----CCC---------------------------------CCC------
Confidence 1456999998632 0 0 000 111
Q ss_pred eeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCc
Q 002411 484 KKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPAR 563 (926)
Q Consensus 484 ~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~ 563 (926)
-||.-=|.||. +|. ...
T Consensus 235 ----------------PWG~GRPGWHI-ECS-aMa--------------------------------------------- 251 (586)
T KOG2007|consen 235 ----------------PWGKGRPGWHI-ECS-AMA--------------------------------------------- 251 (586)
T ss_pred ----------------CCCCCCCCcee-eeH-HHH---------------------------------------------
Confidence 24444499998 453 110
Q ss_pred ccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCc
Q 002411 564 RETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADS 643 (926)
Q Consensus 564 re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~ 643 (926)
| .++. ...|+|.||.|++ |++++|
T Consensus 252 ------------s-------------~~lG-------~~lDIH~GG~DL~------------------------FPHHeN 275 (586)
T KOG2007|consen 252 ------------S-------------AILG-------SQLDIHGGGIDLA------------------------FPHHEN 275 (586)
T ss_pred ------------H-------------Hhhc-------cccceecCccccc------------------------CCCccc
Confidence 0 0000 2579999999995 677889
Q ss_pred ccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCC
Q 002411 644 TDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 723 (926)
Q Consensus 644 ~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~ 723 (926)
+..+|+++....++-+.++| .|++..+ |+|||||++|+|+..|++++|.+++||+++| ...++++++|+
T Consensus 276 EiAQ~eA~~~~~~wVnYflH-tGhL~i~---------g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl-~~~wr~~ldYs 344 (586)
T KOG2007|consen 276 EIAQSEAAFDDSQWVNYFLH-TGHLTIN---------GEKMSKSLKNFITIKEALKKYSPRQLRLAFL-LHQWRSPLDYS 344 (586)
T ss_pred HHHHHHHHhcCCccceeEEE-cCeeeec---------cchhhhhhccceeHHHHHHhcCHHHHHHHHH-HHHhcCcCCch
Confidence 99999999999999999999 6999987 8999999999999999999999999999998 56789999999
Q ss_pred chhhHHHHHHHHHHHHHHhcCC-CCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHh
Q 002411 724 TSGIEGVHRFLGRMWRLIVGSS-LPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEI-EGTRFNTGISAMMEFINAAY 801 (926)
Q Consensus 724 ~~~i~~~~r~L~r~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f~~~~~ 801 (926)
++.+..+..+...+-+|+.... +... ... .......+..++..+..+..+|..++ ++++...+++.+.++++..|
T Consensus 345 ~s~m~~a~q~e~~~~~ff~~~~al~~~--~~~-~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N 421 (586)
T KOG2007|consen 345 DSTMEQALQLEKSLNNFFLDVKALLRG--AKP-FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGN 421 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--cch-hhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 9988888776655555542110 0000 000 01123345667888888999999998 78999999999999998887
Q ss_pred ccc
Q 002411 802 KWE 804 (926)
Q Consensus 802 ~~~ 804 (926)
.+.
T Consensus 422 ~~i 424 (586)
T KOG2007|consen 422 AYI 424 (586)
T ss_pred HHH
Confidence 764
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.93 E-value=1.2e-25 Score=248.43 Aligned_cols=114 Identities=25% Similarity=0.344 Sum_probs=96.1
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccccccc------------------ChHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------------GLPAEQYAIE 154 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~------------------Glpie~~a~~ 154 (926)
+++++|+.|+ ||||. +||||++.++.+|+++||+|++|++|.+++|+|+| |.|+...+..
T Consensus 18 ~~~~~v~tgi-~psG~-~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p 95 (353)
T cd00674 18 KEKYVVASGI-SPSGH-IHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDP 95 (353)
T ss_pred CCeEEEecCC-CCCCC-cccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhh
Confidence 3568887766 59998 99999999999999999999999999999999999 7777777777
Q ss_pred hCCCchHHHHHHHHHHHHHHHHcCccccccCccccCC-hhHHHHHHHHHHHHhhCCcEE
Q 002411 155 TGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE-PAYYKWTQWIFLQLLKRGLAY 212 (926)
Q Consensus 155 ~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d-~~y~~~v~~~f~~L~~~Gliy 212 (926)
.|+.+ ++++.+.+.+++.|++|||++| ++.|++ ...-.+.+.++..|.+++.|.
T Consensus 96 ~g~~~-~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~ 150 (353)
T cd00674 96 FGCCE-SYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIM 150 (353)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHH
Confidence 77766 9999999999999999999998 344444 444478888888888876653
No 61
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=1.5e-23 Score=246.83 Aligned_cols=120 Identities=23% Similarity=0.278 Sum_probs=109.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
.++++.|..+.|+|+|+ +||||+|+.+++|+++|++|+.||+|.++.|+|++|.++...+...+..++.+++.+++.|+
T Consensus 109 ~~~~v~Ie~~spnp~g~-lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~ 187 (507)
T PRK01611 109 KGKKVVVEYVSANPTGP-LHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIK 187 (507)
T ss_pred CCCEEEEEecCCCCCCC-CcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888889999998 99999999999999999999999999999999999999988887777677889999999999
Q ss_pred HHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEE-Ee
Q 002411 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAY-QA 214 (926)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy-~~ 214 (926)
+++++|||.+| .++.+.+..+...+++++.+|.++|++| +.
T Consensus 188 ~~l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~ 229 (507)
T PRK01611 188 EDLDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVES 229 (507)
T ss_pred HHHHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEee
Confidence 99999999998 6667777777789999999999999999 54
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.87 E-value=4.8e-22 Score=232.17 Aligned_cols=111 Identities=23% Similarity=0.222 Sum_probs=83.1
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccC--------hHH-HHHHHHhCCC------
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--------LPA-EQYAIETGTH------ 158 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--------lpi-e~~a~~~g~~------ 158 (926)
+.++|..|+ ||||. +||||++.++.+|+++|++|++|++|.+++|+|+|| +|. +..+...|.+
T Consensus 23 ~~~~~~~g~-~psG~-~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 23 PPVVVETGI-GPSGL-PHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CcEEEEeCC-CCCCC-cccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 446666554 79998 999999999999999999999999999999999997 554 2333344433
Q ss_pred ----chHHHHHHHHHHHHHHHHcCccccccCccccCChhHH-HHHHHHHHHHhhCC
Q 002411 159 ----PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYY-KWTQWIFLQLLKRG 209 (926)
Q Consensus 159 ----~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~-~~v~~~f~~L~~~G 209 (926)
+..+++.+.+.+++.|+++||.+| ++.+++-... .+.+.+...|.+++
T Consensus 101 p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~ 153 (510)
T PRK00750 101 PFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRD 153 (510)
T ss_pred CCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHH
Confidence 789999999999999999999988 3334332222 34444444554443
No 63
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.74 E-value=1.6e-17 Score=192.63 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=78.1
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccccccc------------------ChHHHHHHHHh
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAF------------------GLPAEQYAIET 155 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~------------------Glpie~~a~~~ 155 (926)
++++|.+|.+ |||. +||||++..+.+|+++|++|++|++|.+++|+|+| |.|+.......
T Consensus 18 ~~~~~~tg~~-psG~-~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~ 95 (515)
T TIGR00467 18 NLYTVASGIT-PSGH-IHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPE 95 (515)
T ss_pred CeEEEecCCC-CCCC-ccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCC
Confidence 4688888777 9998 99999999999999999999999999999999999 88877666667
Q ss_pred CCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 156 GTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 156 g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
|++ ..+++.+...+.+.|..+|+.++
T Consensus 96 g~~-~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 96 GCK-TSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred CCc-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 775 88999999999999999999876
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.71 E-value=3.9e-15 Score=177.59 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=85.2
Q ss_pred cccccccCCCccCcc-----------------------hhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHH----HH
Q 002411 681 AHKMSKSRGNVVNPD-----------------------DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVH----RF 733 (926)
Q Consensus 681 G~KMSKSkGNvv~p~-----------------------eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~----r~ 733 (926)
|.|||||+||+|+|. ++++.+|.|++||++++.. ...+.+|+.+.+.... .+
T Consensus 370 ~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~d~~~~~~~n~~~y 448 (566)
T TIGR00456 370 LGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFDWDAMLSFEGNTAPY 448 (566)
T ss_pred CCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceecHHHHhccCCCCchh
Confidence 689999999999998 7888899999999999876 5788888876543321 12
Q ss_pred HH----HHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc
Q 002411 734 LG----RMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 805 (926)
Q Consensus 734 L~----r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~ 805 (926)
+. |+..++.....................+..++..+..+...+..++++++++.++..+++++...|+|+.
T Consensus 449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~~~~l~~La~~~N~yy~ 524 (566)
T TIGR00456 449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVLTNYLYELASLFSSFYK 524 (566)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHh
Confidence 32 3333332111000000000000112224456778899999999999999999999999999999998763
No 65
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.65 E-value=4.4e-16 Score=163.11 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=106.8
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
..|.|||+ |||||+|+++++|+++|++|+.|++|.+..++|++|.++...|.+.+ .+.++++.+++.+.+.+++|||+
T Consensus 7 ~spN~~~~-~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~~L~i~ 84 (212)
T cd00671 7 VSANPTGP-LHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYGRLDVR 84 (212)
T ss_pred cCCCCCCC-ccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCc
Confidence 58999998 99999999999999999999999999999999999999999887654 48899999999999999999999
Q ss_pred ccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCC
Q 002411 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 225 (926)
Q Consensus 181 ~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~ 225 (926)
+| .+..|++ +...++.++..|.++|++|+....+++|+.+.
T Consensus 85 ~d--~~~~es~--~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 85 FD--VWFGESS--YLGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred Cc--eecchhh--hhhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 88 5556654 48889999999999999999988888776543
No 66
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.59 E-value=5e-15 Score=151.76 Aligned_cols=129 Identities=25% Similarity=0.424 Sum_probs=98.7
Q ss_pred CCchhhHHHHH-HHHHHHHHH---hcCCCCCCCCCCCc----ccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 002411 722 WNTSGIEGVHR-FLGRMWRLI---VGSSLPDGTFKGGT----VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM 793 (926)
Q Consensus 722 ~~~~~i~~~~r-~L~r~~~~~---~~~~~~~~~~~~~~----~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l 793 (926)
+++++++++.| |++++||.+ ++.. ....+.+.. .......|+|+++++++++++++++|++|+|+.|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~-~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYA-NLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 46788999999 999999854 3210 001111110 01124568999999999999999999999999999999
Q ss_pred HHHHHHHhcccc---------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCC-----CCCccccCCCCC
Q 002411 794 MEFINAAYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGH-----SNSLAYESFPKA 847 (926)
Q Consensus 794 ~~f~~~~~~~~~---------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~-----~~sv~~~~WP~~ 847 (926)
|.|++...+|+- ...++++.++++|+|||||+|||||+.++. ++||+.++||.+
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~~ 159 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEV 159 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCCC
Confidence 999987655431 123689999999999999999999999985 379999999997
Q ss_pred Cccc
Q 002411 848 NPDY 851 (926)
Q Consensus 848 de~~ 851 (926)
++..
T Consensus 160 ~~~~ 163 (183)
T cd07961 160 DESL 163 (183)
T ss_pred cccc
Confidence 6543
No 67
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.43 E-value=4.1e-13 Score=126.97 Aligned_cols=107 Identities=24% Similarity=0.290 Sum_probs=85.8
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHH
Q 002411 722 WNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-MEFINAA 800 (926)
Q Consensus 722 ~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l-~~f~~~~ 800 (926)
|+++.+.++.|+|+|+|+++..... +.. +. ......|+++++++++++++++++|++|+|++|++.+ |+|.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~--~~~-~~--~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE--TEG-EL--EELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh--ccC-Cc--cccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7889999999999999999854210 100 10 1123457889999999999999999999999999996 9999887
Q ss_pred hcccc---------chHHHHHHHHHHhhchhhHHHHHHHHHc
Q 002411 801 YKWEK---------HPRKIIEPFILLLAPYAPHMSEELWFRL 833 (926)
Q Consensus 801 ~~~~~---------~~~~~l~~l~~lLaP~~P~~aEelw~~L 833 (926)
+.|.. ...++++.++++|+||+||+|||+|+.|
T Consensus 76 ~~Y~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 76 DWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 76532 3457899999999999999999999875
No 68
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.43 E-value=7.3e-13 Score=135.41 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=93.4
Q ss_pred CchhhHHHHHHHHHHHH---HHhcCCCCCCCCCCCcc----cCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002411 723 NTSGIEGVHRFLGRMWR---LIVGSSLPDGTFKGGTV----VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMME 795 (926)
Q Consensus 723 ~~~~i~~~~r~L~r~~~---~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~ 795 (926)
+.+.++++.++++++|| |+.+.. . .+.+... ......|+++++++++++++++++|++|+|+.|++.+|+
T Consensus 2 ~~~~~~~~~~~~~Kl~N~~rf~~~~~-~--~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~ 78 (180)
T cd07960 2 SDEILKQVAEAYRKIRNTFRFLLGNL-N--DFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNN 78 (180)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcc-c--CCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34566777777777775 454332 1 1111110 112345789999999999999999999999999999999
Q ss_pred HHH-HHhccc--------------c--------chHHHHHHHHHHhhchhhHHHHHHHHHcCC---CCCccccCCCCCCc
Q 002411 796 FIN-AAYKWE--------------K--------HPRKIIEPFILLLAPYAPHMSEELWFRLGH---SNSLAYESFPKANP 849 (926)
Q Consensus 796 f~~-~~~~~~--------------~--------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~---~~sv~~~~WP~~de 849 (926)
|++ .+.+++ . ....+++.+++||+|||||+|||||+.|+. .++|+.++||++++
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~~~~wP~~~~ 158 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPE 158 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCeeccCCCCCcc
Confidence 996 343321 0 224689999999999999999999999986 47899999999876
Q ss_pred ccC
Q 002411 850 DYL 852 (926)
Q Consensus 850 ~~l 852 (926)
...
T Consensus 159 ~~~ 161 (180)
T cd07960 159 EWK 161 (180)
T ss_pred ccc
Confidence 543
No 69
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.41 E-value=8.5e-13 Score=124.60 Aligned_cols=110 Identities=47% Similarity=0.792 Sum_probs=87.6
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Q 002411 722 WNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAY 801 (926)
Q Consensus 722 ~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~ 801 (926)
|+++++.+++||++|+|+++.... . +.............|.++++++++++++++++|++|+|++|++.+++|++.+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~-~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELA-E-ALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHH-h-hccccccccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 788999999999999999884321 0 11000000011335788999999999999999999999999999999999999
Q ss_pred cccc-------chHHHHHHHHHHhhchhhHHHHHHHHHc
Q 002411 802 KWEK-------HPRKIIEPFILLLAPYAPHMSEELWFRL 833 (926)
Q Consensus 802 ~~~~-------~~~~~l~~l~~lLaP~~P~~aEelw~~L 833 (926)
+|.. ...++++.++++|+|||||+|||+|+.|
T Consensus 79 ~~~~~~~p~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 79 KYKKKDAQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HhhccccchHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 8753 2357899999999999999999999875
No 70
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.1e-10 Score=137.25 Aligned_cols=163 Identities=18% Similarity=0.198 Sum_probs=104.9
Q ss_pred eeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEee-cceeEeccCCcccccccccc
Q 002411 605 VYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKS-GDFFVMKDNPNIRLIARAHK 683 (926)
Q Consensus 605 l~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~-~hG~vl~~~~~~~~~~~G~K 683 (926)
+||-|.|| |+-+.|+|+..... +..+.+.++.| +-|++...+ |.|
T Consensus 338 IyV~gadq---~~~~~ql~~~l~~~-----------------------g~~~~~~~~~h~~~~l~~~~~--------g~k 383 (577)
T COG0018 338 IYVLGADQ---HGHFKQLKAVLELL-----------------------GYGPDKEVLLHQGVGLVRGGE--------GVK 383 (577)
T ss_pred EEEeCCcc---hhHHHHHHHHHHHh-----------------------cCCCccceEEEEEEeeeECCC--------Ccc
Confidence 77899999 55566877632111 12222234443 235555544 899
Q ss_pred ccccCCCccCcchhhhhcC----------------------chhhhHHhhhcCCcCCCCcCCchhhHH-----------H
Q 002411 684 MSKSRGNVVNPDDVVTEYG----------------------ADSLRLYEMFMGPFRDSKTWNTSGIEG-----------V 730 (926)
Q Consensus 684 MSKSkGNvv~p~eii~~yG----------------------aD~lRl~ll~~~~~~~~~~~~~~~i~~-----------~ 730 (926)
|||=.||+|+.+++++.-| .||+||++++..+ ..+..|+++.+.. +
T Consensus 384 mStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~-~~~~~Fd~d~~lsfegNt~pYvQYA 462 (577)
T COG0018 384 MSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSR-DKDYVFDWDKALSFEGNTAPYVQYA 462 (577)
T ss_pred ccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCC-CCCcEeeHHHHHhccCCCchhHHHH
Confidence 9999999999999999888 9999999996554 5666677655432 2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCc-ccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc
Q 002411 731 HRFLGRMWRLIVGSSLPDGTFKGGT-VVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 805 (926)
Q Consensus 731 ~r~L~r~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~ 805 (926)
+..+..+++-.-.. ........ .......+.+++.+|.++-.-+.++.++++.+....-++++....++|+.
T Consensus 463 ~ARi~SIlrka~e~---~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~YL~~LA~~Fn~fY~ 535 (577)
T COG0018 463 HARICSILRKAGED---ELDLSTEADALLTELEERELVKKLLEFPEVLEEAAEELEPHRLANYLYDLAGSFNSFYN 535 (577)
T ss_pred HHHHHHHHHhcccc---ccccccccchhccChHHHHHHHHHHHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence 33333333322110 00110000 00111124567788888888899999999999999999999999998864
No 71
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.32 E-value=5.4e-13 Score=132.48 Aligned_cols=89 Identities=31% Similarity=0.652 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhccc--------------------cchHHHHHHHHHHhhch
Q 002411 763 TLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEF-INAAYKWE--------------------KHPRKIIEPFILLLAPY 821 (926)
Q Consensus 763 d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f-~~~~~~~~--------------------~~~~~~l~~l~~lLaP~ 821 (926)
|+|+++++++++++++++|++|+|++|++.+++| ++.+++++ ....++++.+++||+||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~ 80 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESREAQYTLYEILKILLILLSPF 80 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHHHHHHHHHHHHHHhhccCCC
Confidence 6789999999999999999999999999999998 46664432 12347899999999999
Q ss_pred hhHHHHHHHH-----HcCCCCCccccCCCCCCcccC
Q 002411 822 APHMSEELWF-----RLGHSNSLAYESFPKANPDYL 852 (926)
Q Consensus 822 ~P~~aEelw~-----~L~~~~sv~~~~WP~~de~~l 852 (926)
|||+|||+|+ .++.++|++.+.||. +....
T Consensus 81 ~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~ 115 (153)
T PF08264_consen 81 MPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFI 115 (153)
T ss_dssp SHHHHHHHHHHCTTHHTTSSSSGGGS------GGGG
T ss_pred CcHHHHHHHHHhhhccCCCCCeeeeCCCCC-Chhhh
Confidence 9999999995 456778999999998 55433
No 72
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.31 E-value=3e-10 Score=135.40 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=86.4
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhhh-------------------------cCchhhhHHhhhcCCcCCC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-------------------------YGADSLRLYEMFMGPFRDS 719 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-------------------------yGaD~lRl~ll~~~~~~~~ 719 (926)
.|+|+.+ |+||||-+||+|+.+|++++ -|.|++||++++.. ...+
T Consensus 362 ~g~V~~~---------g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~-~~~~ 431 (562)
T PRK12451 362 FGLILKD---------GKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNE-RMHN 431 (562)
T ss_pred eeeEecC---------CCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcC-CCCC
Confidence 5777754 78999999999999999996 67999999999654 4666
Q ss_pred CcCCchhhHH-----------HHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHH
Q 002411 720 KTWNTSGIEG-----------VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNT 788 (926)
Q Consensus 720 ~~~~~~~i~~-----------~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ 788 (926)
..|+.+.+.. ++..+..+.+-. .. ...........+.+..++..+..+...+.+++++++++.
T Consensus 432 ~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka---~~---~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~ 505 (562)
T PRK12451 432 IEFSLENMLKFEGETGPYVQYTHARACSILRKE---SV---EFETCTFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSV 505 (562)
T ss_pred ceECHHHHhCcCCCccHHHHHHHHHHHHHHHhc---CC---CccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 6777655311 122222222211 00 010000001122344567888999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 002411 789 GISAMMEFINAAYKWEK 805 (926)
Q Consensus 789 ai~~l~~f~~~~~~~~~ 805 (926)
++..+++++...|+|+.
T Consensus 506 ~~~yl~~LA~~fN~fy~ 522 (562)
T PRK12451 506 ISKYVLDVAQSFNKYYG 522 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 73
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.28 E-value=6.2e-12 Score=123.52 Aligned_cols=75 Identities=28% Similarity=0.248 Sum_probs=72.4
Q ss_pred cCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 100 DMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 100 ~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
...|||||. +||||+++++++|+++||+|++|++|.++.|+|++|.++...|.+.+..++++++.+++.++++++
T Consensus 3 ~~~p~~~~~-~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 3 FSGITPNGY-LHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred ecCCCCCCC-ccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 358999998 999999999999999999999999999999999999999999999999999999999999999998
No 74
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.13 E-value=2.3e-10 Score=111.31 Aligned_cols=112 Identities=25% Similarity=0.396 Sum_probs=81.3
Q ss_pred CCchhhHHHHHHHHHHHHHHhcCCC--CCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 002411 722 WNTSGIEGVHRFLGRMWRLIVGSSL--PDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA 799 (926)
Q Consensus 722 ~~~~~i~~~~r~L~r~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~ 799 (926)
++++++.++++||.++|+++..... ...+............+.++++.++++++++.++|++|+|++|++.+|++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~ 80 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWN 80 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5788999999999999987632100 11111000001112345678899999999999999999999999999999973
Q ss_pred --Hhccc----------c---------chHHHHHHHHHHhhchhhHHHHHHHHHc
Q 002411 800 --AYKWE----------K---------HPRKIIEPFILLLAPYAPHMSEELWFRL 833 (926)
Q Consensus 800 --~~~~~----------~---------~~~~~l~~l~~lLaP~~P~~aEelw~~L 833 (926)
.|.|. . ...++++.++++|+||+||+||++|++|
T Consensus 81 ~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 81 DFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 44321 1 1236789999999999999999999875
No 75
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.09 E-value=7.8e-10 Score=106.21 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Q 002411 725 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 804 (926)
Q Consensus 725 ~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~ 804 (926)
+-+....+++.|+++++..... +..... ......+.++++++++++++++++|++|+|++|++.+++|++.+++|.
T Consensus 4 ~l~~~~gnll~r~~~~~~~~~~--~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~n~y~ 79 (129)
T cd07957 4 ELANNLGNLVNRTLNMASKYFG--GVVPEF--GGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYI 79 (129)
T ss_pred HHHhhHhhHHHHHHHHHHHHcC--CcCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 3455667899999988743210 111000 011345788999999999999999999999999999999998877642
Q ss_pred c-----------c----------hHHHHHHHHHHhhchhhHHHHHHHHHc
Q 002411 805 K-----------H----------PRKIIEPFILLLAPYAPHMSEELWFRL 833 (926)
Q Consensus 805 ~-----------~----------~~~~l~~l~~lLaP~~P~~aEelw~~L 833 (926)
+ . ..++++.++++|+|||||+|||+|+.|
T Consensus 80 ~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 80 DETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred ccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 1 1 125678999999999999999999875
No 76
>PLN02286 arginine-tRNA ligase
Probab=99.07 E-value=4.5e-08 Score=116.99 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=86.4
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhh-----------------------------hcCchhhhHHhhhcCC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-----------------------------EYGADSLRLYEMFMGP 715 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-----------------------------~yGaD~lRl~ll~~~~ 715 (926)
.|+|+..+ |+||||-+||+|+.+|+|+ ..|.|++||++++..
T Consensus 368 ~g~V~~~~--------g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~- 438 (576)
T PLN02286 368 FGLVLGED--------GKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNN- 438 (576)
T ss_pred eccEECCC--------CCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcC-
Confidence 58886554 7899999999999999999 357899999998554
Q ss_pred cCCCCcCCchhhHH-----------HHHHHHHHHHHHhcCCCCCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHHHHhc
Q 002411 716 FRDSKTWNTSGIEG-----------VHRFLGRMWRLIVGSSLPDGTFKG-GTVVNDEEPTLEQLCTLHKCIAKVTEEIEG 783 (926)
Q Consensus 716 ~~~~~~~~~~~i~~-----------~~r~L~r~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~ 783 (926)
...+.+|+.+.+.. ++..+..+.+-.-.. . ..... .......+.+..++..|.++-.-+..+.++
T Consensus 439 ~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~-~--~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~ 515 (576)
T PLN02286 439 RLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKD-I--DELKKTGKIVLDHPDERALGLHLLQFPEVVEEACTD 515 (576)
T ss_pred CCCCCccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCc-c--ccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677787666321 222233333221000 0 00000 000111223455677888888889999999
Q ss_pred ccHHHHHHHHHHHHHHHhcccc
Q 002411 784 TRFNTGISAMMEFINAAYKWEK 805 (926)
Q Consensus 784 ~~f~~ai~~l~~f~~~~~~~~~ 805 (926)
++-+..+.-++++....++|+.
T Consensus 516 ~~P~~l~~Yl~~LA~~F~~fY~ 537 (576)
T PLN02286 516 LLPNRLCEYLYNLSEKFTKFYS 537 (576)
T ss_pred cCchHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988763
No 77
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.00 E-value=3.2e-10 Score=124.70 Aligned_cols=85 Identities=24% Similarity=0.222 Sum_probs=55.5
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccCh--------HHHHHHHH-hCCC--------
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL--------PAEQYAIE-TGTH-------- 158 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl--------pie~~a~~-~g~~-------- 158 (926)
.+++.+.=.|+|. +|||+++..+.+|+++|-+|.+|.+|.+++.||+..- |-. ...+ .|..
T Consensus 24 ~~v~~sG~sPSG~-~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 24 PYVFASGISPSGL-PHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp EEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSBTTTSB-TT
T ss_pred cEEEecCCCCCCC-cccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCccccCCCCC
Confidence 4455566789998 9999999999999999999999999999999999862 211 0000 1211
Q ss_pred --chHHHHHHHHHHHHHHHHcCcccc
Q 002411 159 --PKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 159 --~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
...+++.+.+.+.+.|..+|+.++
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT---E
T ss_pred CCCccHHHHHHHHHHHHHHHcCCceE
Confidence 245788888888888888888665
No 78
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.1e-06 Score=97.38 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=66.0
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccC--------hHHHHHHHH-hCC--------
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--------LPAEQYAIE-TGT-------- 157 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--------lpie~~a~~-~g~-------- 157 (926)
..+++.+.=.|+|. +|||+++-.+.+|+++|-+|.+|+.|.+++=||++. +|-.....+ .|.
T Consensus 19 ~~~~v~tGisPSG~-~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSGL-IHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCCC-cccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 34556677789998 999999999999999999999999999999999986 221111122 232
Q ss_pred --CchHHHHHHHHHHHHHHHHcCcccc
Q 002411 158 --HPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 158 --~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
.+..+++.+...|.+-|..+|+.+.
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceE
Confidence 1356777777888888888888665
No 79
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.31 E-value=2.1e-06 Score=97.16 Aligned_cols=120 Identities=24% Similarity=0.288 Sum_probs=83.6
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHH-------H-----------
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAI-------E----------- 154 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~-------~----------- 154 (926)
.++.+|=-.=|-|+|+ |||||+|+.+++|.++|.++..||+|.-..-..+.|..+-..+. +
T Consensus 19 ~~kv~VE~sSpNp~kp-lHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 97 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKP-LHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHL 97 (354)
T ss_dssp SEEEEEEE---BTTSS--BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHH
T ss_pred CCEEEEEecCCCCCCC-CcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccch
Confidence 4556555557888898 99999999999999999999999999999999999987743221 0
Q ss_pred -------------hCC---Cc---------------------hHHHHH-HHHHHHHHHHHcCccccccCccccCChhHHH
Q 002411 155 -------------TGT---HP---------------------KITTLR-NINRFRTQLKSLGFSYDWNREISTIEPAYYK 196 (926)
Q Consensus 155 -------------~g~---~~---------------------~~~~~~-~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~ 196 (926)
... .+ .+...+ ..+.++++|.++|+.+| ..+.-.+..|..
T Consensus 98 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD--v~~~E~Es~~~~ 175 (354)
T PF00750_consen 98 EDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD--VWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S--EEEEHCHHHHTT
T ss_pred hhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcccchhhhhh
Confidence 000 00 001122 44567788999999998 555555566777
Q ss_pred HHHHHHHHHhhCCcEEEec
Q 002411 197 WTQWIFLQLLKRGLAYQAE 215 (926)
Q Consensus 197 ~v~~~f~~L~~~Gliy~~~ 215 (926)
.+..++.+|.++|++|+..
T Consensus 176 ~v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESD 194 (354)
T ss_dssp HHHHHHHHHHCTTTEEEET
T ss_pred HHHHHHHHHHhCCcEEecC
Confidence 8899999999999999764
No 80
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.31 E-value=2.1e-06 Score=80.47 Aligned_cols=99 Identities=22% Similarity=0.259 Sum_probs=70.3
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcc-cCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Q 002411 724 TSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTV-VNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYK 802 (926)
Q Consensus 724 ~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~ 802 (926)
++.+.++.+|++++||.+...........+... ......|.++++++++++++++++|++|+|++|++.+|+|++.++.
T Consensus 1 ~~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~~n~ 80 (117)
T cd07375 1 EERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNELNW 80 (117)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccH
Confidence 357888999999999876321100000100000 0112347889999999999999999999999999999999998876
Q ss_pred ccc-----------------chHHHHHHHHHHhhchh
Q 002411 803 WEK-----------------HPRKIIEPFILLLAPYA 822 (926)
Q Consensus 803 ~~~-----------------~~~~~l~~l~~lLaP~~ 822 (926)
|.. ...++++.++++|+|||
T Consensus 81 y~~~~~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 81 YLDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHHHhhHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 532 12367889999999986
No 81
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.21 E-value=2.5e-06 Score=89.86 Aligned_cols=91 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
+|.|+|. ||+||+++.++.++++| ++++.++.-+|+...+.. + ......+.+.++|+.||+
T Consensus 7 aPsPtG~-lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wLGl-- 67 (240)
T cd09287 7 APNPNGP-LHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWLGV-- 67 (240)
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHcCC--
Confidence 7999998 99999999999999999 678888888888765441 1 223344559999999999
Q ss_pred cccCccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 182 Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
+|+..+.. .++.+..+....+|.++|++|.
T Consensus 68 ~~d~~~~q--S~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 68 KWDEVVIA--SDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred CCCCccch--hccHHHHHHHHHHHHHcCCccc
Confidence 67655443 4566666777899999999997
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.98 E-value=1.9e-05 Score=93.03 Aligned_cols=97 Identities=22% Similarity=0.292 Sum_probs=73.7
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|.|||. |||||+++.++.+.+|| +|+..++.-+|+..-.++ .....+.+.|.++|+.
T Consensus 102 V~tRFaPsPtG~-LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~-----------R~~~e~~~~I~edL~w 164 (567)
T PRK04156 102 VVMRFAPNPSGP-LHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTK-----------RPDPEAYDMILEDLKW 164 (567)
T ss_pred EEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCcc-----------cchHHHHHHHHHHHHH
Confidence 444459999998 99999999999999998 466677777777654331 1234556889999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+ +|+..+.. .+|.+.-.....+|.++|++|.-
T Consensus 165 LGl--~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 198 (567)
T PRK04156 165 LGV--KWDEVVIQ--SDRLEIYYEYARKLIEMGGAYVC 198 (567)
T ss_pred cCC--CCCCccCc--ccCHHHHHHHHHHHHHcCCCccC
Confidence 999 67666544 45666677888899999999853
No 83
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.63 E-value=9.8e-05 Score=86.91 Aligned_cols=95 Identities=20% Similarity=0.236 Sum_probs=73.5
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|.|||. |||||+++.++.+.+|| .|+..++.-+|+..-+ .....+.+.|.++|+.
T Consensus 94 vvtRFaPsPtG~-LHiGharaalln~~~Ar-----~~~G~~iLRidDTDp~-------------R~~~e~~~~I~edL~w 154 (560)
T TIGR00463 94 VVMRFAPNPSGP-LHIGHARAAILNQYFAK-----KYKGKLIIRFDDTDPR-------------RVKPEAYDMILEDLDW 154 (560)
T ss_pred eEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCCcc-------------cccHHHHHHHHHHHHH
Confidence 566669999998 99999999999999986 3445566666766432 2234578899999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+. |+..+. ..+|.+.......+|.++|++|..
T Consensus 155 LGi~--~d~~~~--qSd~~~~y~~~a~~Li~~G~AY~C 188 (560)
T TIGR00463 155 LGVK--GDEVVY--QSDRIEEYYDYCRKLIEMGKAYVC 188 (560)
T ss_pred cCCC--CCcccc--ccccHHHHHHHHHHHHHcCCceee
Confidence 9996 555544 456777788889999999999974
No 84
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.35 E-value=0.00043 Score=80.77 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=71.3
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|-|||. |||||+++.++...+||- ..|.-++ =+|+. +|.....++.+.+.++|+.
T Consensus 12 v~tRFAPsPtG~-LHiGharaAlln~l~Ar~--~gG~~iL---RiEDT-------------Dp~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 12 IVTRFPPEPSGY-LHIGHAKAALLNDYYARR--YKGRLIL---RFDDT-------------NPSKEKAEFEESIIEDLGK 72 (523)
T ss_pred EEEeeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEE---EECCC-------------CCCccchHHHHHHHHHHHH
Confidence 556669999998 999999999999988874 3454333 33443 3333456788999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+ +|+..+.+ .+|.+.-.....+|.++|++|.-
T Consensus 73 LGl--~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~C 106 (523)
T PLN03233 73 IEI--KPDSVSFT--SDYFEPIRCYAIILIEEGLAYMD 106 (523)
T ss_pred hCC--CCCCCccc--cccHHHHHHHHHHHHHcCCeEec
Confidence 999 46666554 45566677888999999999974
No 85
>PLN02907 glutamate-tRNA ligase
Probab=97.34 E-value=0.00051 Score=84.00 Aligned_cols=94 Identities=24% Similarity=0.401 Sum_probs=71.2
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|-|||. |||||+++.++...+|| +..|.-++ =+|+.. |.....++.+.+.++|+.
T Consensus 214 v~tRFaPsPtG~-LHiG~ar~al~n~~~Ar--~~~G~~iL---R~eDTd-------------p~r~~~e~~~~I~~dl~w 274 (722)
T PLN02907 214 VCTRFPPEPSGY-LHIGHAKAALLNQYFAR--RYKGKLIV---RFDDTN-------------PSKESDEFVENILKDIET 274 (722)
T ss_pred eEEeeCCCCCCc-ccHHHHHHHHHHHHHHH--HhCCEEEE---EecCCC-------------CCcCChHHHHHHHHHHHH
Confidence 566669999998 99999999999999998 34554333 334433 333445788999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
||+ +|+..+.+ .+|.+.-.....+|.++|++|.
T Consensus 275 LG~--~~d~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 275 LGI--KYDAVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred cCC--CCCCcccc--cccHHHHHHHHHHHHHcCCeee
Confidence 999 56676655 4555666788889999999996
No 86
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.30 E-value=0.00043 Score=74.87 Aligned_cols=90 Identities=24% Similarity=0.328 Sum_probs=66.5
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
.|-|||. ||+||+++.++.-.+|| +..|.-++.+==+|. ......+.+.+.++|+.||+
T Consensus 6 APSPtG~-lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLGl-- 64 (272)
T TIGR03838 6 APSPSGP-LHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYGL-- 64 (272)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcCC--
Confidence 7999998 99999999999999998 446665555432222 22234577889999999999
Q ss_pred cccCc-cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~~-~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+|+.. +.. .++.+.-.....+|.++|++|.-
T Consensus 65 ~wDe~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~C 96 (272)
T TIGR03838 65 HWDGEVVYQ--SQRHALYQAALDRLLAAGLAYPC 96 (272)
T ss_pred CCCCCeeee--eCCHHHHHHHHHHHHHcCCEEec
Confidence 56654 333 35556667788899999999964
No 87
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.00049 Score=79.27 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
-.|-|+|. |||||+++.+..-.+|| .++-.|+.=+|+... ........+.|.++|+.||+.
T Consensus 7 FAPSPTG~-lHiG~artAL~n~l~Ar-----~~gG~fiLRIEDTD~-------------~Rs~~~~~~~I~e~L~wLGI~ 67 (445)
T PRK12558 7 FAPSPTGY-LHVGNARTALLNWLYAR-----KHGGKFILRIDDTDL-------------ERSKQEYADAIAEDLKWLGIN 67 (445)
T ss_pred eCCCCCCc-ccHHHHHHHHHHHHHHH-----HhCCEEEEEeccCCc-------------ccchHHHHHHHHHHHHHcCCC
Confidence 37999998 99999999987755554 334444445555542 223467788999999999996
Q ss_pred ccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 181 ~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+| ..|. ..+.......+..+|.++|++|+-
T Consensus 68 ~D--e~y~--QSer~~~y~~~~e~L~e~G~AY~C 97 (445)
T PRK12558 68 WD--RTFR--QSDRFDRYDEAAEKLKAAGRLYPC 97 (445)
T ss_pred CC--cccc--HHHHHHHHHHHHHHHHHCCCEEEe
Confidence 55 5443 344456789999999999999864
No 88
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.00062 Score=80.31 Aligned_cols=93 Identities=27% Similarity=0.378 Sum_probs=70.0
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|-|||. |||||+++.++...+||-. .|.-+ .=+|+. +|.....++.+.+.++|+.
T Consensus 53 v~tRFAPsPtGy-LHIGharaAllN~l~Ar~~--gG~~i---LRiEDT-------------Dp~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 53 VVTRFPPEASGF-LHIGHAKAALINSMLADKY--KGKLV---FRFDDT-------------NPSKEKEHFEQAILDDLAT 113 (601)
T ss_pred eEEeeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCEEE---EEEcCC-------------CCcccCHHHHHHHHHHHHH
Confidence 566669999998 9999999999999888843 45333 233443 3333456788999999999
Q ss_pred cCccccccC-ccccCChhHHHHHHHHHHHHhhCCcEE
Q 002411 177 LGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAY 212 (926)
Q Consensus 177 lgi~~Dw~~-~~~T~d~~y~~~v~~~f~~L~~~Gliy 212 (926)
||+ +|+. .+.+ .+|.+.-.....+|.++|++|
T Consensus 114 LGl--~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 114 LGV--SWDVGPTYS--SDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCC--CCCCceeec--cccHHHHHHHHHHHHHcCCEE
Confidence 999 6765 4444 456677788889999999999
No 89
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.18 E-value=0.00096 Score=78.10 Aligned_cols=94 Identities=23% Similarity=0.322 Sum_probs=68.4
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
++=-+|-|||. ||+||+++.++...+||.. .|.-+ .=+|+.. |......+.+.+.++|+.|
T Consensus 53 ~tRFaPsPtG~-LHiGharaalln~~~Ar~~--gG~~i---LRiEDTD-------------p~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 53 YFRFPPEPNGF-LHIGHAKSMNLNFGSARAH--GGKCY---LRYDDTN-------------PETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCEEE---EEECCCC-------------ccccChHHHHHHHHHHHHc
Confidence 44459999998 9999999999999888753 44333 3344433 3334557889999999999
Q ss_pred CccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 178 gi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
|+ +|+..+.+ ..|.+.......+|.++|++|.-
T Consensus 114 Gi--~~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~C 146 (574)
T PTZ00437 114 GW--KPDWVTFS--SDYFDQLHEFAVQLIKDGKAYVD 146 (574)
T ss_pred CC--CCCCCCcC--chhHHHHHHHHHHHHHcCCEEEc
Confidence 99 55565543 45555556777799999999974
No 90
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.14 E-value=0.00073 Score=75.12 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=60.1
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
.|.|+|. ||+||+++.++.-.+|| +..|.-++. +|+... ......+.+.+.++|+.||+..
T Consensus 7 APsPtG~-lHiG~~r~al~n~~~Ar--~~~G~~iLR---ieDtD~-------------~R~~~~~~~~i~~~L~wlGl~~ 67 (314)
T PF00749_consen 7 APSPTGY-LHIGHARTALLNYLFAR--KYGGKFILR---IEDTDP-------------ERCRPEFYDAILEDLRWLGLEW 67 (314)
T ss_dssp ---SSSS--BHHHHHHHHHHHHHHH--HTTSEEEEE---EETSST-------------TTCHHHHHHHHHHHHHHHT---
T ss_pred CCCCCCC-cccchhHHHHHHHHHHh--ccCceEEEe---cccccc-------------ccchhhHHHHHHhheeEEEEec
Confidence 7999998 99999999999988887 445544443 344332 2223467788999999999944
Q ss_pred cccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
| ..+|.. ..+.+.-+....+|.++|++|.-
T Consensus 68 D-~~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~C 97 (314)
T PF00749_consen 68 D-YGPYYQ--SDRLEIYQEAAEKLIDKGKAYPC 97 (314)
T ss_dssp S-TCEEEG--GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred C-CeEEeH--HHHHHHHHHHHHHHhhcCCCccc
Confidence 4 144443 45555667788899999999874
No 91
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.13 E-value=0.00091 Score=78.20 Aligned_cols=92 Identities=24% Similarity=0.381 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
-+|-|||. ||+||+++.++...+||- ..|.-++ =+|+.. |.....++.+.+.++|+.||+.
T Consensus 5 FaPsPtG~-LHiG~ar~al~n~~~A~~--~~G~~iL---RieDTd-------------~~r~~~e~~~~I~~dL~wLG~~ 65 (522)
T TIGR00440 5 FPPEPNGY-LHIGHAKSICLNFGYAKY--YNGTCNL---RFDDTN-------------PVKEDPEYVESIKRDVEWLGFK 65 (522)
T ss_pred cCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEE---EEcCCC-------------cccCChHHHHHHHHHHHHcCCC
Confidence 38999998 999999999999988873 3454333 344433 2333457889999999999994
Q ss_pred ccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 181 ~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
.| +..+.++ +|.........+|.++|++|.-
T Consensus 66 ~d-~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 66 WE-GKIRYSS--DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred CC-CCceEcc--ccHHHHHHHHHHHHHcCCEEee
Confidence 43 3344443 3334444556899999999974
No 92
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.13 E-value=0.0012 Score=69.67 Aligned_cols=90 Identities=24% Similarity=0.316 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
-.|-|+|. ||+||+++.++.-.+||- ..|.-++ =+|+.. +........+.+.++|+.||+
T Consensus 6 FAPsPtG~-lHlG~~~~al~~~l~Ar~--~~G~~iL---RieDtD-------------~~R~~~~~~~~I~~dL~wlGl- 65 (238)
T cd00807 6 FPPEPNGY-LHIGHAKAILLNFGYAKK--YGGRCNL---RFDDTN-------------PEKEEEEYVDSIKEDVKWLGI- 65 (238)
T ss_pred cCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEEE---EecCCC-------------CcccchHHHHHHHHHHHHcCC-
Confidence 37999998 999999999999888864 3454333 333332 333445678889999999999
Q ss_pred ccccCccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 181 YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 181 ~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
+|+..+.. .++.+.-+....+|.++|++|.
T Consensus 66 -~wD~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 66 -KPYKVTYA--SDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred -CCCCceec--ccCHHHHHHHHHHHHHcCCeec
Confidence 55555443 4555666778889999999999
No 93
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.04 E-value=0.001 Score=72.85 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=66.0
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
++=-.|-|+|. ||+||+++.++.-.+||-. .|.-++ =+|+. ++......+.+.+.++|+.|
T Consensus 7 ~~RFAPSPTG~-LHlG~~rtAL~n~l~Ar~~--~G~~iL---RiEDt-------------D~~R~~~~~~~~I~~dL~wl 67 (299)
T PRK05710 7 IGRFAPSPSGP-LHFGSLVAALGSWLDARAH--GGRWLL---RIEDI-------------DPPREVPGAADAILADLEWL 67 (299)
T ss_pred eEEeCcCCCCc-ccHHHHHHHHHHHHHHHHc--CCEEEE---EECcC-------------CCCccchHHHHHHHHHHHHC
Confidence 34448999998 9999999999987776643 343333 33332 22223456788899999999
Q ss_pred CccccccC-ccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 178 GFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 178 gi~~Dw~~-~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
|+ +|+. .+.. .++.+.-+....+|.++|++|.-
T Consensus 68 Gl--~wDe~~~~Q--S~r~~~Y~~~~~~L~~~G~aY~C 101 (299)
T PRK05710 68 GL--HWDGPVLYQ--SQRHDAYRAALDRLRAQGLVYPC 101 (299)
T ss_pred CC--CCCCCceEe--eccHHHHHHHHHHHHHCCCceec
Confidence 99 6664 4443 34556667788899999999863
No 94
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0017 Score=75.42 Aligned_cols=95 Identities=24% Similarity=0.354 Sum_probs=70.1
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|-|||. |||||+++.++.-.+||. ..|.-++.+ |+ ++|+.....+.+.+.++|+-
T Consensus 10 v~tRFAPsPtG~-LHiG~artAl~N~~~Ar~--~~G~fiLRi---ED-------------TD~~R~~~e~~~~I~~~L~W 70 (472)
T COG0008 10 VRTRFAPSPTGY-LHIGHARTALLNYLYARK--YGGKFILRI---ED-------------TDPERETPEAEDAILEDLEW 70 (472)
T ss_pred eEEEECcCCCCc-cchHHHHHHHHHHHHHHH--hCCEEEEEe---cC-------------CCCCCCCHHHHHHHHHHHHh
Confidence 555568999998 999999999999888874 345444432 32 23344456778899999999
Q ss_pred cCccccccC-ccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~-~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+ +|+. .|.. .++...-.....+|.++|++|.-
T Consensus 71 LGl--~wde~~~~Q--S~r~~~Y~~~~~~Li~~G~AY~c 105 (472)
T COG0008 71 LGL--DWDEGPYYQ--SERFDIYYEYAEKLIEKGKAYVC 105 (472)
T ss_pred cCC--CCCCceeeh--hhhHHHHHHHHHHHHHCCCeEEe
Confidence 999 7777 3444 35555667778899999999975
No 95
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=96.98 E-value=0.0014 Score=75.24 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=65.1
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
.|-|+|. ||+||+++.++.-.+||- ..|.-++.+ |+.. +......+.+.+.++|+.||+
T Consensus 5 APSPTG~-LHiG~artAL~n~l~Ar~--~gG~fiLRi---EDTD-------------~~R~~~e~~~~I~~~L~WlGl-- 63 (433)
T PRK12410 5 APSPTGD-MHIGNLRAAIFNYIVAKQ--QNEDFLIRI---EDTD-------------KERNIEGKDKEILEILNLFGI-- 63 (433)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEEEe---CcCC-------------CCcCChHHHHHHHHHHHHcCC--
Confidence 6999998 999999999998777763 345444443 3322 222345678889999999999
Q ss_pred cccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+|+..|..++ +.+.-.....+|.++|.+|.-
T Consensus 64 ~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY~C 94 (433)
T PRK12410 64 SWDKLVYQSE--NLKFHRQMAEKLLSEKKAFAC 94 (433)
T ss_pred CCCCCeehhc--cHHHHHHHHHHHHHcCCeeee
Confidence 6667776544 334456678899999999964
No 96
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=96.96 E-value=0.0018 Score=76.03 Aligned_cols=96 Identities=22% Similarity=0.341 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|-|||. ||+||+++.++...+||- ..|.-+ .=+|+.. |.....++.+.+.++|+.
T Consensus 30 v~tRFaPsPtG~-LHiG~ar~al~n~~~Ar~--~~G~~i---LRieDTd-------------~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 30 VHTRFPPEPNGY-LHIGHAKSICLNFGLAQD--YGGKCN---LRFDDTN-------------PEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred eEEEeCCCCCCc-ccHHHHHHHHHHHHHHHH--hCCEEE---EEECCCC-------------CCcCChHHHHHHHHHHHH
Confidence 455569999998 999999999999888874 344333 3344433 333455788999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+..| +..+.+++ |.........+|.++|++|.-
T Consensus 91 LGi~~d-~~~~~qS~--r~~~~y~~a~~Li~~G~AY~c 125 (554)
T PRK05347 91 LGFDWS-GELRYASD--YFDQLYEYAVELIKKGKAYVD 125 (554)
T ss_pred cCCCCC-CCceeeec--CHHHHHHHHHHHHHcCCEeeC
Confidence 999543 34455443 333333444699999999974
No 97
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=96.91 E-value=0.0017 Score=76.16 Aligned_cols=90 Identities=22% Similarity=0.295 Sum_probs=64.3
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
.|-|+|. ||+||+++.++.-.+|| ...|.-++. +|+.. +......+.+.+.++|+.||+
T Consensus 7 APsPtG~-lHiG~~rtal~n~l~Ar--~~~G~~iLR---ieDtD-------------~~R~~~~~~~~i~~~L~wlGl-- 65 (470)
T TIGR00464 7 APSPTGY-LHIGGARTALFNYLFAK--HTGGEFILR---IEDTD-------------LERNIEEAEEAILEGLKWLGI-- 65 (470)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCC-------------CccCChHHHHHHHHHHHHCCC--
Confidence 7999998 99999999999988887 334543333 33332 222345678889999999999
Q ss_pred ccc-CccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~-~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+|+ .+|..++ +.+.-+....+|.++|++|.-
T Consensus 66 ~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~C 97 (470)
T TIGR00464 66 SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYRC 97 (470)
T ss_pred CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEec
Confidence 676 4555443 334446677889999999964
No 98
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.76 E-value=0.003 Score=73.80 Aligned_cols=93 Identities=27% Similarity=0.363 Sum_probs=67.4
Q ss_pred EcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcC
Q 002411 99 LDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLG 178 (926)
Q Consensus 99 ~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 178 (926)
+--.|-|+|. ||+||+++.++.-.+|| +..|.-++.+ |+. ++......+.+.+.++|+.||
T Consensus 7 tRFAPSPTG~-lHiG~artAL~n~l~Ar--~~gG~fiLRI---EDT-------------D~~R~~~~~~~~i~~~L~WLG 67 (513)
T PRK14895 7 TRFAPSPTGF-LHIGSARTALFNYLFAR--HHNGKFLLRI---EDT-------------DKERSTKEAVEAIFSGLKWLG 67 (513)
T ss_pred EeeCCCCCCC-ccHHHHHHHHHHHHHHH--HcCCEEEEEE---CCC-------------CccccChHHHHHHHHHHHHcC
Confidence 3347999998 99999999999988888 4466555443 333 222334567888999999999
Q ss_pred cccccc-CccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 179 FSYDWN-REISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 179 i~~Dw~-~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+ ||+ .+|+-++ ..+.-.....+|.++|.+|.-
T Consensus 68 l--~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~C 100 (513)
T PRK14895 68 L--DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYYC 100 (513)
T ss_pred C--CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEEe
Confidence 9 676 3455443 344556778899999999974
No 99
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=96.75 E-value=0.0028 Score=77.54 Aligned_cols=95 Identities=27% Similarity=0.426 Sum_probs=69.1
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++=-+|-|||. ||+||+++.++...+||- ..|. +..=+|+.. |......+.+.+.++|+.
T Consensus 32 v~tRFaPsPtG~-lHiGhar~alln~~~A~~--~~G~---~~LR~eDTd-------------~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 32 VVTRFPPEPNGY-LHIGHAKSILLNFGIARD--YGGR---CHLRMDDTN-------------PETEDTEYVEAIKDDVRW 92 (771)
T ss_pred eEEEeCcCCCCc-ccHHHHHHHHHHHHHHHH--hCCE---EEEEeCCCC-------------CCcCChHHHHHHHHHHHH
Confidence 566669999998 999999999999888873 3443 333345443 333445788999999999
Q ss_pred cCccccccCc-cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~-~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+ +|+.. +.+ .+|.+.-.....+|.++|++|..
T Consensus 93 LG~--~wd~~~~~q--S~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 93 LGF--DWGEHLYYA--SDYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred cCC--CCCCCceEe--ecCHHHHHHHHHHHHHcCCcccC
Confidence 999 55443 444 45566667778899999999964
No 100
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.71 E-value=0.0038 Score=66.30 Aligned_cols=86 Identities=22% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
-.|-|+|. ||+||+++.++.-.++|- ..| .++.=+|+.. +......+.+.+.++|..||+
T Consensus 6 fAPsPtG~-LHlG~~~~al~n~l~ar~--~~G---~~ilRieDtd-------------~~r~~~~~~~~i~~dL~wlGl- 65 (239)
T cd00808 6 FAPSPTGF-LHIGGARTALFNYLFARK--HGG---KFILRIEDTD-------------QERSVPEAEEAILEALKWLGL- 65 (239)
T ss_pred eCCCCCCc-ccHHHHHHHHHHHHHHHH--cCC---eEEEEECcCC-------------CCCCchHHHHHHHHHHHHcCC-
Confidence 37999998 999999999999887773 344 3444455532 222334678889999999999
Q ss_pred ccccC---------ccccCChhHHHHHHHHHHHHhhCC
Q 002411 181 YDWNR---------EISTIEPAYYKWTQWIFLQLLKRG 209 (926)
Q Consensus 181 ~Dw~~---------~~~T~d~~y~~~v~~~f~~L~~~G 209 (926)
||+. .|..++ ..+.-.....+|.++|
T Consensus 66 -~~d~~~~~~g~~~~~~QS~--r~~~y~~~~~~L~~~g 100 (239)
T cd00808 66 -DWDEGPDVGGPYGPYRQSE--RLEIYRKYAEKLLEKG 100 (239)
T ss_pred -CCCcCCccCCCCCCEeeeC--CHHHHHHHHHHHHHcC
Confidence 7767 555544 3444555678888888
No 101
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=96.71 E-value=0.0031 Score=66.49 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=60.9
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
.|-|||. ||+||+++.++.-.+||-. .|.-++. +|+... ......+.+.+.++|+.||+
T Consensus 7 APsPtG~-lHlG~~r~al~n~l~Ar~~--~G~~iLR---ieDtD~-------------~R~~~~~~~~I~~dL~wlGl-- 65 (230)
T cd00418 7 APSPTGY-LHIGHARTALFNFAFARKY--GGKFILR---IEDTDP-------------ERSRPEYVESILEDLKWLGL-- 65 (230)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHHc--CCeEEEE---eCcCCC-------------CCCChHHHHHHHHHHHHcCC--
Confidence 7999998 9999999999998887753 4444433 343332 22344678889999999999
Q ss_pred cccC-ccccCChhHHHHHHHHHHHHhhCC
Q 002411 182 DWNR-EISTIEPAYYKWTQWIFLQLLKRG 209 (926)
Q Consensus 182 Dw~~-~~~T~d~~y~~~v~~~f~~L~~~G 209 (926)
+|+. .+.. .++.+.-+....+|.++|
T Consensus 66 ~wd~~~~~Q--S~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 66 DWDEGPYRQ--SDRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCCCeeeh--hcCHHHHHHHHHHHHHcC
Confidence 5666 4443 344455567788899999
No 102
>PLN02627 glutamyl-tRNA synthetase
Probab=96.65 E-value=0.0036 Score=73.35 Aligned_cols=94 Identities=24% Similarity=0.299 Sum_probs=66.9
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
.+=-.|-|+|. ||+||+++.++.-.+|| +..|.-++.+ |+.. +......+.+.+.++|+.|
T Consensus 47 r~RFAPSPTG~-LHiG~aRtAL~n~l~Ar--~~gG~fiLRI---EDTD-------------~~R~~~e~~~~I~~~L~WL 107 (535)
T PLN02627 47 RVRFAPSPTGN-LHVGGARTALFNYLFAR--SKGGKFVLRI---EDTD-------------LARSTKESEEAVLRDLKWL 107 (535)
T ss_pred EEEeCCCCCCC-ccHHHHHHHHHHHHHHH--HhCCEEEEEe---CcCC-------------CCCCChHHHHHHHHHHHHc
Confidence 33347899998 99999999999988887 4456555443 3322 2233456788899999999
Q ss_pred CccccccCc---------cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 178 GFSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 178 gi~~Dw~~~---------~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
|+ ||+.. |+- .++.+.-.....+|.++|.+|.-
T Consensus 108 Gl--~wDegp~~gg~~gpy~Q--SeR~~~Y~~~a~~Li~~G~AY~C 149 (535)
T PLN02627 108 GL--DWDEGPDVGGEYGPYRQ--SERNAIYKQYAEKLLESGHVYPC 149 (535)
T ss_pred CC--CCCcCcccCCCCCCeee--eccHHHHHHHHHHHHHcCCeeec
Confidence 99 77653 332 23445556778899999999963
No 103
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0056 Score=69.54 Aligned_cols=99 Identities=23% Similarity=0.256 Sum_probs=75.3
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++--||=|||- ||||||...++ .-|...++ +=-.++-||+.. |.....+..+.+.+++..
T Consensus 201 Vv~RFPPEpSGy-LHIGHAKAALL----NqYfa~~~-~G~LIvRFDDTN-------------PaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 201 VVTRFPPEPSGY-LHIGHAKAALL----NQYFAQAY-QGKLIVRFDDTN-------------PAKENEEFEDVILEDLSL 261 (712)
T ss_pred eEEecCCCCCce-eehhhHHHHHH----HHHHHHhc-CceEEEEecCCC-------------cchhhHHHHHHHHHHHHH
Confidence 455568999998 99999987654 34544433 223455677653 344455677889999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCc
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPV 218 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v 218 (926)
|||..| ..|...+|-..+.....+|.+.|.+|-+..|.
T Consensus 262 LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 262 LGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred hCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 999998 67777889999999999999999999987764
No 104
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.025 Score=62.85 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=88.7
Q ss_pred cEEEEcCCCCCCCCC-CCchhhhhhhHHHHHHHHHHHcCCcccccccccc----cChHHHHHHHH---------------
Q 002411 95 KFYVLDMFPYPSGAG-LHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA----FGLPAEQYAIE--------------- 154 (926)
Q Consensus 95 k~~v~~~~Pypng~~-lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~----~Glpie~~a~~--------------- 154 (926)
|-++.| +--||-.. +|+||+|+.+++|.++|.+...|++|+..--.-+ +|+-|+..-.+
T Consensus 188 KrvlVD-FSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQ 266 (656)
T KOG4426|consen 188 KRVLVD-FSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQ 266 (656)
T ss_pred eeEEEe-cCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHH
Confidence 334444 77788654 9999999999999999999999999986543333 45545432211
Q ss_pred ---------------------------hCCCch------HHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHH
Q 002411 155 ---------------------------TGTHPK------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWI 201 (926)
Q Consensus 155 ---------------------------~g~~~~------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~ 201 (926)
+|-.|. .+|+-....+..-+++|.|+.- ---+..|...+..+
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~-----e~GESFYq~~m~~v 341 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLK-----ERGESFYQDRMAEV 341 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHh-----hcchhhhhhHHHHH
Confidence 011111 1233334566778889999875 12335678888999
Q ss_pred HHHHhhCCcEEEec-cCccccCCCCcccC
Q 002411 202 FLQLLKRGLAYQAE-VPVNWCPALGTVLA 229 (926)
Q Consensus 202 f~~L~~~Gliy~~~-~~v~wc~~~~t~ls 229 (926)
...|..+|++..++ +.+.|-+.|.-+|.
T Consensus 342 veel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 342 VEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHHhcCCceeecCCceEeccCCCCcceE
Confidence 99999999999877 45788888876663
No 105
>PLN02859 glutamine-tRNA ligase
Probab=96.50 E-value=0.0067 Score=73.70 Aligned_cols=95 Identities=22% Similarity=0.338 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++--+|-|||. |||||+++.++.-.+||.. .|. +..=+|+.. |......+.+.+.++|+.
T Consensus 265 V~tRFaPsPtG~-LHiGharaallN~~~Ar~~--~G~---~~LRieDTd-------------p~r~~~e~~~~I~edL~W 325 (788)
T PLN02859 265 VYTRFPPEPNGY-LHIGHAKAMFVDFGLAKER--GGC---CYLRFDDTN-------------PEAEKKEYIDHIEEIVEW 325 (788)
T ss_pred eEEEeCCCCCCc-ccHHHHHHHHHHHHHHHHh--CCE---EEEEecCCC-------------CCccchHHHHHHHHHHHH
Confidence 445559999998 9999999999998888863 443 333344433 334456788999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+ +|+..+.+++ |.+.....-.+|.++|++|.-
T Consensus 326 LG~--~~d~~~~qSd--~f~~~Y~~A~~Li~~G~AY~C 359 (788)
T PLN02859 326 MGW--EPFKITYTSD--YFQELYELAVELIRRGHAYVD 359 (788)
T ss_pred cCC--CCCCcccccH--hHHHHHHHHHHHHHcCCeEec
Confidence 997 6767666544 332222345679999999974
No 106
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=96.29 E-value=0.0075 Score=70.84 Aligned_cols=93 Identities=25% Similarity=0.293 Sum_probs=65.6
Q ss_pred EcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcC
Q 002411 99 LDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLG 178 (926)
Q Consensus 99 ~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 178 (926)
+=-.|-|+|. ||+||+++.++.-.+||- ..|.-++. +|+. ++......+.+.+.++|+.||
T Consensus 7 ~RfAPSPtG~-lHiG~~rtal~n~l~Ar~--~~G~fiLR---ieDt-------------D~~R~~~~~~~~i~~~L~wlG 67 (476)
T PRK01406 7 TRFAPSPTGY-LHIGGARTALFNWLFARH--HGGKFILR---IEDT-------------DQERSTEEAEEAILEGLKWLG 67 (476)
T ss_pred EEeCCCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcC-------------CCCCCChHHHHHHHHHHHHCC
Confidence 3348999998 999999999998777764 24433333 3332 223345667889999999999
Q ss_pred ccccccCc--------cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 179 FSYDWNRE--------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 179 i~~Dw~~~--------~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+ +|+.. |.. .++.+.-.....+|.++|++|.-
T Consensus 68 l--~~De~p~~~~~gpy~Q--S~r~~~y~~~~~~L~~~g~aY~C 107 (476)
T PRK01406 68 L--DWDEGPDGGPYGPYRQ--SERLDIYKEYAEQLLEEGKAYYC 107 (476)
T ss_pred C--CCCCCCccCCCCceeh--hcCHHHHHHHHHHHHHcCCeeec
Confidence 9 66654 443 34445567778899999999964
No 107
>PLN02882 aminoacyl-tRNA ligase
Probab=95.05 E-value=0.021 Score=73.90 Aligned_cols=78 Identities=23% Similarity=0.427 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCC-
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW- 273 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~- 273 (926)
.+.-..+...|.++|++.......+ .++.||||+.|++.+..+|||++++++++++++..+.+.|
T Consensus 383 ~eA~~~Ii~~Lk~~g~L~~~~~~~H--------------syp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~ 448 (1159)
T PLN02882 383 KDADKDIIAAIKAKGRLVKSGSITH--------------SYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWV 448 (1159)
T ss_pred HHhhHHHHHHHHHCCCccceeeeec--------------CCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEE
Confidence 3455667888999999987654432 2478899999999999999999999999999999988888
Q ss_pred cHHHH-HHHHhhhc
Q 002411 274 PESVK-EMQRNWIG 286 (926)
Q Consensus 274 p~~~~-~~~~~~i~ 286 (926)
|+.++ ....+||.
T Consensus 449 P~~~~~~r~~~wl~ 462 (1159)
T PLN02882 449 PDYVKEKRFHNWLE 462 (1159)
T ss_pred CCcchhhHHHHHHh
Confidence 99984 78899984
No 108
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.61 E-value=0.039 Score=70.87 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-C
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 273 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~ 273 (926)
.+.-..+...|.++|++.+.....+ ..++|+|||.|++.+..+|||++++++++++++.++... .
T Consensus 362 ~eA~~~Ii~~L~~~g~l~~~~~~~h--------------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~ 427 (975)
T PRK06039 362 KDADKEIIRDLKERGLLFKAETYEH--------------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWY 427 (975)
T ss_pred HHhhHHHHHHHHhCCCEeeeeeecC--------------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEE
Confidence 4456778889999999987654322 246788999999999999999999999999999998887 5
Q ss_pred cHHHHH-HHHhhhc
Q 002411 274 PESVKE-MQRNWIG 286 (926)
Q Consensus 274 p~~~~~-~~~~~i~ 286 (926)
|+.+++ ...+||.
T Consensus 428 P~~~~~~~~~~wl~ 441 (975)
T PRK06039 428 PEHIKDGRFGKWLE 441 (975)
T ss_pred CcccchhhHHHHHh
Confidence 888887 7888884
No 109
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=94.59 E-value=0.014 Score=66.20 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=27.3
Q ss_pred ceeEeccCCccccccccc-cccccCCCccCcchhhhhcCchhhh
Q 002411 665 DFFVMKDNPNIRLIARAH-KMSKSRGNVVNPDDVVTEYGADSLR 707 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~-KMSKSkGNvv~p~eii~~yGaD~lR 707 (926)
.|+++.++ |+ |||+-+||+|..+|+|++-...+.+
T Consensus 277 ~g~vl~~~--------gk~~mstR~G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 277 FGVVLLKD--------GKVKMSTRKGNVITLDDLLDEAVERALE 312 (354)
T ss_dssp E-EEEETT--------BEESS-TTTTSSTBHHHHHHHHHHHHHH
T ss_pred EEEEEcCC--------CCccccCCCCCceEHHHHHHHHHHHHHH
Confidence 58888776 77 9999999999999999965555555
No 110
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=94.29 E-value=0.058 Score=69.91 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCC-c
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 274 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~-p 274 (926)
+.-..+...|.++|++.......+ .+|+||||+.|++.+..+|||+++++.++++++..+.+.| |
T Consensus 488 dA~~~Ii~~Lk~~g~L~~~e~~~H--------------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P 553 (1205)
T PTZ00427 488 EADNVIKKKLKNENRLLSNNTIVH--------------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIP 553 (1205)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeec--------------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeC
Confidence 445567789999999987755432 2577899999999999999999999999999998888875 8
Q ss_pred HHH-HHHHHhhhc
Q 002411 275 ESV-KEMQRNWIG 286 (926)
Q Consensus 275 ~~~-~~~~~~~i~ 286 (926)
+.+ +....+||.
T Consensus 554 ~~~~~~r~~~wl~ 566 (1205)
T PTZ00427 554 AHIKEKKFHNWIK 566 (1205)
T ss_pred chhhHhHHHHHHh
Confidence 888 578899984
No 111
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=94.07 E-value=0.07 Score=68.82 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCC--CC
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD 272 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~--~~ 272 (926)
.+.-..++..|.++|++...+... ...++|++|+.+++.+...||||+++.+++++++.+++ +.
T Consensus 331 ~ear~~Ii~~L~~~g~l~~~~~~~--------------h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~ 396 (1052)
T PRK14900 331 FEARKEVKRLLAEQGLDRGAKPHV--------------LPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTR 396 (1052)
T ss_pred HHHHHHHHHHHHhCCCeecceeee--------------ccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcE
Confidence 345567888999999998763321 12467889999999999999999999999999999975 44
Q ss_pred -CcHHHHHHHHhhhc
Q 002411 273 -WPESVKEMQRNWIG 286 (926)
Q Consensus 273 -~p~~~~~~~~~~i~ 286 (926)
+|++.++...+||.
T Consensus 397 ~~P~~~~~~~~~wl~ 411 (1052)
T PRK14900 397 FIPEQWTNTYMAWMR 411 (1052)
T ss_pred EEChHHHHHHHHHHh
Confidence 89999998889985
No 112
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=93.97 E-value=0.083 Score=66.66 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-C
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 273 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~ 273 (926)
.+.-..+...|.++|++.......+ ..++|++||.+++.+..+||||+++++++++++.++... +
T Consensus 314 ~~a~~~i~~~L~~~g~~~~~~~~~~--------------~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~ 379 (800)
T PRK13208 314 EEARKKIVEDLKSGGLLGKQEPIKH--------------NVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWY 379 (800)
T ss_pred HHHHHHHHHHHHhCCCeeceeeeec--------------cCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEE
Confidence 3456778889999999875533221 135678889999999999999999999999999998877 8
Q ss_pred cHHHHHHHHhhhc
Q 002411 274 PESVKEMQRNWIG 286 (926)
Q Consensus 274 p~~~~~~~~~~i~ 286 (926)
|++.++...+||.
T Consensus 380 P~~~~~~~~~~l~ 392 (800)
T PRK13208 380 PEHMRVRLENWIE 392 (800)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999984
No 113
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=93.83 E-value=0.081 Score=67.31 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCC--CC
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD 272 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~--~~ 272 (926)
.+.-..+...|.++|++.+.+... ...|.|++||.+++.+..+||||+++++++++++.+++ +.
T Consensus 314 ~~ar~~i~~~L~~~g~l~~~~~~~--------------~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~ 379 (861)
T TIGR00422 314 FEARKKIVEDLKEEGLLVKIEPHT--------------HNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK 379 (861)
T ss_pred HHhHHHHHHHHHhCCCeeeeeeee--------------ccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE
Confidence 355567888999999998664332 23467888999999999999999999999999999973 44
Q ss_pred -CcHHHHHHHHhhhc
Q 002411 273 -WPESVKEMQRNWIG 286 (926)
Q Consensus 273 -~p~~~~~~~~~~i~ 286 (926)
+|++.++...+||.
T Consensus 380 ~~P~~~~~~~~~wl~ 394 (861)
T TIGR00422 380 FVPKRMEKRYLNWLR 394 (861)
T ss_pred EEChHHHHHHHHHHh
Confidence 69999999999984
No 114
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.078 Score=66.05 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-Cc
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 274 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p 274 (926)
+.-..+...|.++|.+....+..+ .+|.||||..|++.|..+|||++++..++++++.++.+. -|
T Consensus 375 dAn~~Ii~~Lk~~g~Ll~~e~i~H--------------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P 440 (933)
T COG0060 375 DANKKIIEDLKEKGNLLKSEKIEH--------------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVP 440 (933)
T ss_pred cCCHHHHHHHHhCCceeeeeeEEe--------------CCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEC
Confidence 555678888999898887766554 367899999999999999999999999999998888887 57
Q ss_pred HHHHHHHHhhh
Q 002411 275 ESVKEMQRNWI 285 (926)
Q Consensus 275 ~~~~~~~~~~i 285 (926)
+..+....+||
T Consensus 441 ~~~~~R~~~mv 451 (933)
T COG0060 441 DWGKNRFGNMV 451 (933)
T ss_pred hhHHHHHHHHH
Confidence 77788888887
No 115
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=93.75 E-value=0.088 Score=67.03 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-Cc
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WP 274 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p 274 (926)
+.-..+...|.++|++...+...+ ..++|+|||.+++.+...|||++++++++++++.++.+. +|
T Consensus 381 ~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P 446 (861)
T TIGR00392 381 KANKIIIEQLKDKGLLLKAEKITH--------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446 (861)
T ss_pred HhHHHHHHHHHhCCCeeeeeeEec--------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEEC
Confidence 445678889999998876544332 145788999999999999999999999999999999887 89
Q ss_pred HHHHHHHHhhhc
Q 002411 275 ESVKEMQRNWIG 286 (926)
Q Consensus 275 ~~~~~~~~~~i~ 286 (926)
+..+....+||.
T Consensus 447 ~~~~~~~~~~l~ 458 (861)
T TIGR00392 447 EWGEGRFGNWLE 458 (861)
T ss_pred chHHHHHHHHHh
Confidence 999999899984
No 116
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=93.20 E-value=0.11 Score=66.14 Aligned_cols=77 Identities=22% Similarity=0.332 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCC--CC-
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD- 272 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~--~~- 272 (926)
+.-..+...|.++|++...+.. +...|+|+|||.+++.+..+||||+++++++++++.+++ +.
T Consensus 317 ~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~ 382 (874)
T PRK05729 317 EARKAIVADLEELGLLVKIEPH--------------THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKF 382 (874)
T ss_pred HHHHHHHHHHHhCCCeeeeEEe--------------eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEE
Confidence 4456788899999999765432 223467888899999999999999999999999999864 33
Q ss_pred CcHHHHHHHHhhhc
Q 002411 273 WPESVKEMQRNWIG 286 (926)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (926)
+|++.++...+|+.
T Consensus 383 ~P~~~~~~~~~wl~ 396 (874)
T PRK05729 383 VPERWEKTYFHWME 396 (874)
T ss_pred EChHHHHHHHHHHh
Confidence 99999999999984
No 117
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.61 E-value=0.11 Score=56.57 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=39.8
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (926)
|+|+.||+||..+ -..+.++++ .|+++.+..| |.|++ |. -+..++-....+..++++..+..++.++|+
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~-d~~a~~~d~s-g~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG-GQTGIIGDPS-GKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe-cCceeeCCCC-CccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6672299999777 223455554 6888877666 22222 11 000011111345667778888888888886
No 118
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=91.93 E-value=0.23 Score=63.44 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhh--hHHHHhhccCCCC
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE--YADRLLDDLDDLD 272 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~--y~~~l~~~l~~~~ 272 (926)
.+.-..+...|.++|++.......+ ..++|+||+.|++.+..+|||+++++ +++++++.++.+.
T Consensus 369 ~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~ 434 (912)
T PRK05743 369 FKANPKIIEKLEEKGALLKEEKITH--------------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVK 434 (912)
T ss_pred HHhHHHHHHHHHhCCCeeeeeeeec--------------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccE
Confidence 4556778889999999876654332 24678999999999999999999998 9999999999887
Q ss_pred -CcHHHHHHHHhhhc
Q 002411 273 -WPESVKEMQRNWIG 286 (926)
Q Consensus 273 -~p~~~~~~~~~~i~ 286 (926)
.|+..++...+||.
T Consensus 435 ~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 435 WIPAWGKNRIESMVE 449 (912)
T ss_pred EEChHHHHHHHHHHh
Confidence 68888888888874
No 119
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=91.72 E-value=0.21 Score=59.45 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=46.3
Q ss_pred EeecceeEeccCCccccccccccccccC-------C--------CccCcchhhhh-cCchhhhHHhhhcCCcCCCCcCCc
Q 002411 661 MKSGDFFVMKDNPNIRLIARAHKMSKSR-------G--------NVVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNT 724 (926)
Q Consensus 661 ~~~~hG~vl~~~~~~~~~~~G~KMSKSk-------G--------Nvv~p~eii~~-yGaD~lRl~ll~~~~~~~~~~~~~ 724 (926)
+.| .+.+..+ |.|||||+ | +..+...+.++ |.++++|-|++..+....+..++.
T Consensus 326 ~~H-~~~L~~~---------g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~ 395 (567)
T PRK04156 326 TIH-YGRLKIE---------GFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISW 395 (567)
T ss_pred EEE-cceecCC---------CceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCH
Confidence 345 5776654 89999999 4 22444555554 999999999998887767778888
Q ss_pred hhhHHHHHH
Q 002411 725 SGIEGVHRF 733 (926)
Q Consensus 725 ~~i~~~~r~ 733 (926)
+.+..+.|.
T Consensus 396 ~~L~~~nr~ 404 (567)
T PRK04156 396 ENLYAINRK 404 (567)
T ss_pred HHHHHHHHH
Confidence 888877653
No 120
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.25 E-value=0.44 Score=55.34 Aligned_cols=95 Identities=22% Similarity=0.362 Sum_probs=60.1
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++--||=|||- |||||+-.--+- --|.+..|=-+.. -+|+ +.|+....++...+.+...-
T Consensus 249 V~TRFPPEPNG~-LHIGHaKAInvN---FgyAk~~~G~cyL--RfDD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 249 VVTRFPPEPNGI-LHIGHAKAINVN---FGYAKAHGGVCYL--RFDD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eEEeCCCCCCce-eeecchhheeec---hhhhhhhCCeEEE--ecCC-------------CCcchhhHHHHHHHHHHHHH
Confidence 456669999997 999997542111 0011111111111 1222 35666778899999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||.. -.-.|.+.+|-...-..-.+|+++|++|--
T Consensus 310 LG~~----P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764)
T KOG1148|consen 310 LGFE----PYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764)
T ss_pred hCCC----ceeeecchhHHHHHHHHHHHHHhcCceeEE
Confidence 9984 345677766666555666679999999963
No 121
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=91.13 E-value=0.17 Score=49.51 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=10.8
Q ss_pred ceeeecccchhh
Q 002411 603 VDVYVGGAEHAV 614 (926)
Q Consensus 603 vDl~v~G~D~~~ 614 (926)
.|++++|+||..
T Consensus 94 ~~i~~~G~Dq~~ 105 (143)
T cd00802 94 CDIHLGGSDQLG 105 (143)
T ss_pred cEEEEechhHHH
Confidence 699999999975
No 122
>PLN02943 aminoacyl-tRNA ligase
Probab=90.98 E-value=0.35 Score=61.97 Aligned_cols=77 Identities=22% Similarity=0.444 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCC--CC-
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD- 272 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~--~~- 272 (926)
+.-..+...|.++|++...+.. +...++|++|+.+++.+...|||++++++++++++.+++ +.
T Consensus 367 ear~~iv~~L~~~g~l~~~e~~--------------~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~ 432 (958)
T PLN02943 367 EAREKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTI 432 (958)
T ss_pred HHHHHHHHHHHHCCCeeeeeee--------------ecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEE
Confidence 4445677889999998765322 223578899999999999999999999999999999864 33
Q ss_pred CcHHHHHHHHhhhc
Q 002411 273 WPESVKEMQRNWIG 286 (926)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (926)
+|+..++...+|+.
T Consensus 433 ~P~~~~~~~~~wl~ 446 (958)
T PLN02943 433 IPERFEKIYNHWLS 446 (958)
T ss_pred EChHHHHHHHHHHh
Confidence 89999999999984
No 123
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.73 E-value=0.11 Score=56.71 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=40.7
Q ss_pred CCCC-CCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccC--hHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 104 YPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--LPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 104 ypng-~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--lpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
-|+| . ||+||.... -.+.|+++. |++|.+..|=.+.= .|.-......+.+ .+..+++...+..++.++|..
T Consensus 8 ~PTg~~-lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~-~~~i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPS-LHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLD-LELIRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCc-ccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCC-HHHHHHHHHHHHHHHHHHHcc
Confidence 4677 5 999997752 356777765 88887666533221 1210011111222 344566777788888888874
No 124
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=90.47 E-value=1.2 Score=57.04 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=93.4
Q ss_pred CCC-CCc--hhhhh-hh-HHHHHHHHHHHc-------CCcccccccccccC-hHHHHHHHHhCCCchHHH---HHHHH-H
Q 002411 107 GAG-LHV--GHPLG-YT-ATDILARLKRMQ-------GYNVLHPMGWDAFG-LPAEQYAIETGTHPKITT---LRNIN-R 169 (926)
Q Consensus 107 g~~-lHi--GH~~~-~~-~~Di~~Ry~r~~-------G~~V~~~~G~D~~G-lpie~~a~~~g~~~~~~~---~~~~~-~ 169 (926)
|+| .|. +|.-. |. +.|.-.| +..- .....-+.-.|..| +|+.....+.|+....-. .+..+ .
T Consensus 301 GTGvV~~~Pah~p~Dy~~~~~l~~~-~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~ 379 (938)
T TIGR00395 301 GTGVVMSVPAHAPDDYIALEDLLHD-PEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKIL 379 (938)
T ss_pred CcceEEeCCCCCHHHHHHHHHhhhc-chhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHH
Confidence 445 664 77766 33 3454333 1111 23334555667777 777666666675432211 11111 1
Q ss_pred HHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEe-
Q 002411 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRK- 248 (926)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~- 248 (926)
+++.| .-|+..+=--.|.- -...+.-..+...|.++|++..-..+. ..+.|.|||.+++.+
T Consensus 380 y~~~f-~~G~m~~~~~~~~G--~~v~ear~~i~~~L~~~g~~~~~~~~~---------------~~~v~~R~g~~~vv~~ 441 (938)
T TIGR00395 380 YKEEY-HTGVMIYNIPPYKG--MKVSEAKEKVKADLIDAGLADVMYEFS---------------ESPVICRCGTDCIVKV 441 (938)
T ss_pred hhhhc-cCceeccCCcccCC--cCHHHhHHHHHHHHHHCCCceEeeecC---------------CCCcEecCCCeEEEec
Confidence 11111 12332210001111 122344556778899999997654331 123455888888876
Q ss_pred eccccchhhh--hhHHHHhhccCCCC-CcHHHHHHHHhhhc
Q 002411 249 PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWIG 286 (926)
Q Consensus 249 ~~~~~~l~l~--~y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (926)
...||||+++ ++++.+++.++... +|+..++...+||.
T Consensus 442 ~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~ 482 (938)
T TIGR00395 442 VEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKID 482 (938)
T ss_pred cCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHh
Confidence 8999999999 59999999999876 89999998899984
No 125
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=90.39 E-value=0.45 Score=61.50 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCC--CC
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDD--LD 272 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~--~~ 272 (926)
.+.-..+...|.++|++.+..... -..++|+|||.+++.+...|||++++++++++++.+++ +.
T Consensus 360 ~~ar~~ii~~L~~~g~l~~~~~~~--------------~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~ 425 (995)
T PTZ00419 360 FDCRRKIEEELKEMGLLRDKVPNP--------------MRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELK 425 (995)
T ss_pred HHHHHHHHHHHHhcCCEEeeEEee--------------cCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeE
Confidence 345567888999999998664321 12467889999999999999999999999999999974 33
Q ss_pred -CcHHHHHHHHhhhcc
Q 002411 273 -WPESVKEMQRNWIGR 287 (926)
Q Consensus 273 -~p~~~~~~~~~~i~~ 287 (926)
.|+..++...+||..
T Consensus 426 ~~P~~~~~~~~~wl~~ 441 (995)
T PTZ00419 426 IIPSSHENVWYHWLEN 441 (995)
T ss_pred EEChHHHHHHHHHHhc
Confidence 888888888999853
No 126
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=90.20 E-value=0.34 Score=62.20 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhh-------hHHHHhhc
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE-------YADRLLDD 267 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~-------y~~~l~~~ 267 (926)
.+.-..+...|.++|++.......+ .+++|+||+.|++.+...|||++++. .++++++.
T Consensus 400 ~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~ 465 (961)
T PRK13804 400 GDANKAVIEKLIEAGLLLARGRLKH--------------SYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465 (961)
T ss_pred hhhhHHHHHHHHhCCCcccccceec--------------CCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHH
Confidence 3556678889999999886654332 25678999999999999999999998 99999999
Q ss_pred cCCCC-CcHHHHHHHHhhhc
Q 002411 268 LDDLD-WPESVKEMQRNWIG 286 (926)
Q Consensus 268 l~~~~-~p~~~~~~~~~~i~ 286 (926)
++.+. .|+..+....+||.
T Consensus 466 i~~v~~~P~~~~~r~~~~i~ 485 (961)
T PRK13804 466 IDKTRFVPAAGQNRLYNMIE 485 (961)
T ss_pred HhccEEECHHHHHHHHHHHh
Confidence 99887 68888888899984
No 127
>PLN02843 isoleucyl-tRNA synthetase
Probab=90.20 E-value=0.39 Score=61.62 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-CcH
Q 002411 197 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPE 275 (926)
Q Consensus 197 ~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p~ 275 (926)
.-..+...|.++|++...+...+ .+++|+||+.|++.|...|||++++.+++++++.++.+. .|+
T Consensus 388 a~~~Ii~~L~~~g~l~~~e~~~H--------------~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~ 453 (974)
T PLN02843 388 GNAAVVEALDEAGSLLMEEAYGH--------------KYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPA 453 (974)
T ss_pred chHHHHHHHHHCCCeeeeeeecC--------------CCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEECh
Confidence 44667889999998765543321 257889999999999999999999999999999999887 688
Q ss_pred HHHHHHHhhhc
Q 002411 276 SVKEMQRNWIG 286 (926)
Q Consensus 276 ~~~~~~~~~i~ 286 (926)
..++...+||.
T Consensus 454 ~~~~r~~~~i~ 464 (974)
T PLN02843 454 QGENRIRAMVS 464 (974)
T ss_pred HHHHHHHHHHh
Confidence 78888888884
No 128
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=89.64 E-value=0.29 Score=59.70 Aligned_cols=78 Identities=26% Similarity=0.495 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-C
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-W 273 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~ 273 (926)
.+.-..+...|.++|++....... -..++|+||+.+++.+...|||+++++.++++++.++++. .
T Consensus 334 ~~ar~~ii~~L~~~g~l~~~~~~~--------------~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~ 399 (601)
T PF00133_consen 334 FEAREKIIEDLKEKGLLLKIEEIE--------------HSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFY 399 (601)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEE--------------EEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEES
T ss_pred eeccHHHHHHHHHhhhhccccccc--------------cccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEE
Confidence 456677889999999987653321 1234678889999999999999999999999999999887 6
Q ss_pred cHHHHHHHHhhhc
Q 002411 274 PESVKEMQRNWIG 286 (926)
Q Consensus 274 p~~~~~~~~~~i~ 286 (926)
|+..++...+||.
T Consensus 400 P~~~~~~~~~~i~ 412 (601)
T PF00133_consen 400 PESYRKRFENWID 412 (601)
T ss_dssp SSTCHHHHHHHHH
T ss_pred cccchhhhhhhcc
Confidence 8888888888885
No 129
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=89.29 E-value=0.16 Score=58.69 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccc--cChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDA--FGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~--~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
+++.+..|+ -|+|+.||+||+.. -- ..|++...|+++++..|=.+ -|.|.- +..++..-..+...+|+..+.
T Consensus 32 ~~~~iy~G~-dPT~~sLHlGhlv~---l~-~l~~lq~~G~~~~~ligd~ta~igDpsg-k~~~R~~l~~e~i~~n~~~i~ 105 (410)
T PRK13354 32 KPLTLYLGF-DPTAPSLHIGHLVP---LM-KLKRFQDAGHRPVILIGGFTGKIGDPSG-KSKERKLLTDEQVQHNAKTYT 105 (410)
T ss_pred CCcEEEEcc-cCCCCCcchhhHHH---HH-HHHHHHHcCCeEEEEEcccccccCCCCc-ccccccCCCHHHHHHHHHHHH
Confidence 344555554 35553399999544 22 23444558898888776444 233321 111111112344566777777
Q ss_pred HHHHHcCc
Q 002411 172 TQLKSLGF 179 (926)
Q Consensus 172 ~~l~~lgi 179 (926)
.|+.+ |+
T Consensus 106 ~q~~~-~l 112 (410)
T PRK13354 106 EQIFK-LF 112 (410)
T ss_pred HHHHH-hc
Confidence 77766 54
No 130
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.15 E-value=0.015 Score=71.34 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=61.9
Q ss_pred eEEEeecCCccccCCcEEEECCCCccchhccc-ccch-hHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCc
Q 002411 308 KITVYTTRPDTIFGATYLVVAPEHPLLSSLVS-TTQS-QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEA 385 (926)
Q Consensus 308 ~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~-~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~ 385 (926)
...+.|.+|||+.|.+..||+|+.-|...... +... ..++.|. ...+ ...+-.+.+.--.||+.++.
T Consensus 207 l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vft----tr~d-------t~~gvt~~~~a~~h~lv~~~ 275 (814)
T COG0495 207 LDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFT----TRPD-------TLFGVTYVVLAPEHPLVGKL 275 (814)
T ss_pred hhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeee----ccCc-------cccCeEEEEEeCCchHHHHH
Confidence 35566779999999999999999988654431 1100 0011110 0000 00011223333345654432
Q ss_pred --cc--EEecCcccCCCCCCceeecCCCChhhHHHHH
Q 002411 386 --IP--IWVADYVLGSYGTGAIMAVPAHDTRDHEFAL 418 (926)
Q Consensus 386 --~p--i~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~ 418 (926)
-| +.+++||....|||.|+++|+|.+.|+.+-.
T Consensus 276 ~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 276 VTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred hcCccchhHHHHHHHhcCCCceeeeeccCCCcceecc
Confidence 12 7889999999999999999999999997643
No 131
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.13 E-value=3.1 Score=48.00 Aligned_cols=139 Identities=21% Similarity=0.244 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCC-CCchhhhhhhHHHHHHHHHHHcCCcccccc--------
Q 002411 69 IEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAG-LHVGHPLGYTATDILARLKRMQGYNVLHPM-------- 139 (926)
Q Consensus 69 iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~-lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~-------- 139 (926)
++.-.+..|+....|... +.. ..++.+|= +--||-.. .|+||.|+-+++-.++.-.+..|++|..+-
T Consensus 87 ~k~~l~~i~~~~~~~g~~-~~~-~~k~iVVe--fSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQ 162 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKN-ELG-SGKKIVVE--FSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQ 162 (567)
T ss_pred HHHHHHHHHHHhcccCcc-ccc-cCceEEEE--ecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHH
Confidence 566677788888888754 122 23444443 55666543 999999999999999999999999996544
Q ss_pred ------cccccCh-------HHHHH----H-----HHhCCCc----hH------------------HHHHHHHHHHHHHH
Q 002411 140 ------GWDAFGL-------PAEQY----A-----IETGTHP----KI------------------TTLRNINRFRTQLK 175 (926)
Q Consensus 140 ------G~D~~Gl-------pie~~----a-----~~~g~~~----~~------------------~~~~~~~~~~~~l~ 175 (926)
||-..|. ||.+. + .+...+. ++ +.+-.|....+.+.
T Consensus 163 Fgll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~ 242 (567)
T KOG1195|consen 163 FGLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYN 242 (567)
T ss_pred hhHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4444443 23221 0 0000000 01 11122445567889
Q ss_pred HcCccccccCccccCCh-hHHHHHHHHHHHHhhCCcEEEec
Q 002411 176 SLGFSYDWNREISTIEP-AYYKWTQWIFLQLLKRGLAYQAE 215 (926)
Q Consensus 176 ~lgi~~Dw~~~~~T~d~-~y~~~v~~~f~~L~~~Gliy~~~ 215 (926)
|||+.+| ...... .+.+..+.+...+.++||+....
T Consensus 243 Rl~v~FD----~y~gESqv~~e~~~~~~d~~rs~~l~~e~d 279 (567)
T KOG1195|consen 243 RLNVKFD----EYSGESQVSNEKMQEALDLLRSANLTEEID 279 (567)
T ss_pred Hhceeee----eccchHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 9999998 334444 66778888888888888665443
No 132
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=89.07 E-value=0.32 Score=54.56 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
|+|. |||||..+.+.. ..+.+...|.++.+... |-|-+ . ..+ ++++ .++++..+..++.++|+..+
T Consensus 12 PTG~-~HLGnylga~k~--~~~lq~~~~~~~~~~IA-DlHal-t-----~~~-~~~~-l~~~~~~~~~~~lA~GlDP~ 77 (332)
T PRK12556 12 PTGY-PHLGNYIGAIKP--ALQMAKNYEGKALYFIA-DYHAL-N-----AVH-DPEQ-FRSYTREVAATWLSLGLDPE 77 (332)
T ss_pred CCCc-chHHHHHHHHHH--HHHHHHhcCCeEEEEEe-chhhc-c-----CCC-CHHH-HHHHHHHHHHHHhheeeccc
Confidence 5676 888887664332 23344444554544332 32322 1 011 3333 45555566677778888554
No 133
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=87.54 E-value=0.26 Score=57.01 Aligned_cols=30 Identities=30% Similarity=0.223 Sum_probs=23.6
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.||.|...+- +..++.++=+++.
T Consensus 230 G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 259 (408)
T PRK05912 230 GKKMGKSEGNAVWLDEE--KTSPYEMYQKWMN 259 (408)
T ss_pred CCcccCCCCCceeCCCC--CCCHHHHHHHHhc
Confidence 89999999999988762 4556777777764
No 134
>PLN02381 valyl-tRNA synthetase
Probab=87.50 E-value=0.8 Score=59.31 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhcc-----C
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDL-----D 269 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l-----~ 269 (926)
.+.-..+...|.++|++....... ...++|+||+.+++.+...|||++++.++++.++.+ +
T Consensus 427 ~eAr~~Ii~~L~~~g~l~~~~~~~--------------h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~ 492 (1066)
T PLN02381 427 FAAREAVIEALQKKGLYRGAKNNE--------------MRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENK 492 (1066)
T ss_pred HHHHHHHHHHHHhCCCEecceeee--------------cCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCC
Confidence 345567888999999998554322 124788999999999999999999999999999877 4
Q ss_pred CCC-CcHHHHHHHHhhhcc
Q 002411 270 DLD-WPESVKEMQRNWIGR 287 (926)
Q Consensus 270 ~~~-~p~~~~~~~~~~i~~ 287 (926)
.+. .|+..+..-.+||..
T Consensus 493 ~i~~~P~~~~~~~~~wl~n 511 (1066)
T PLN02381 493 KLEFIPKQYLAEWKRWLEN 511 (1066)
T ss_pred ceEEEChHHHHHHHHHHhc
Confidence 455 688888888888843
No 135
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=86.81 E-value=0.42 Score=52.78 Aligned_cols=41 Identities=29% Similarity=0.495 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
+++.+..|+ -|+|. |||||+... ..+.++++ .|++|.+..|
T Consensus 4 ~~~~~y~G~-~PTg~-lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGD-LHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS--BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCc-ccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 344454443 37787 999976653 23444444 8888887776
No 136
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.29 E-value=0.61 Score=53.60 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=16.9
Q ss_pred CCceeeecccchhhhhHHHhhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw 623 (926)
|-+|+...|.||. -|+-.+|=.
T Consensus 147 y~ad~VPVG~DQ~-qHlELaRdI 168 (431)
T PRK12284 147 FNAHKVPVGRDQI-QHIEMARDI 168 (431)
T ss_pred cCCCEEEEcchhH-HHHHHHHHH
Confidence 4689999999995 677767643
No 137
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=86.07 E-value=1.3 Score=56.47 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeec-cccchhhh--hhHHHHhhccCC
Q 002411 194 YYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPM-RQWMLKIT--EYADRLLDDLDD 270 (926)
Q Consensus 194 y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~-~~~~l~l~--~y~~~l~~~l~~ 270 (926)
..+.-..+...|.++|++.+.....+ .+.|+|||.+++.+.+ .|||++++ ++++++++.++.
T Consensus 354 v~eA~~~I~~~L~~~g~~~~~~~~~~---------------~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~ 418 (897)
T PRK12300 354 VREAREKITKDLIEKGIADIMYEFSN---------------RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDN 418 (897)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCC---------------CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHcc
Confidence 34556678889999999987532111 2344588888888765 99999998 799999999988
Q ss_pred CC-CcHHHHHHHHhhhc
Q 002411 271 LD-WPESVKEMQRNWIG 286 (926)
Q Consensus 271 ~~-~p~~~~~~~~~~i~ 286 (926)
+. +|+.+++...+||.
T Consensus 419 ~~~~P~~~~~~~~~~l~ 435 (897)
T PRK12300 419 MEIIPEEYRKEFENTID 435 (897)
T ss_pred CEEECHHHHHHHHHHHh
Confidence 87 89999888888874
No 138
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=85.74 E-value=1.3 Score=46.95 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=32.3
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhh-hcCchhhhHHhhhcCC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 715 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~~ 715 (926)
...+++++ |+|||||+|+ ++..++.+ .|-+++++-|++..+-
T Consensus 143 ~pll~~~~--------g~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 143 FPRLLLED--------GTKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred eeeeeCCC--------CCCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 57777776 8999999998 45555544 3889999999887663
No 139
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=85.15 E-value=3.9 Score=46.62 Aligned_cols=76 Identities=30% Similarity=0.385 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++++++.|.- |+|. +||||... -..+.+++. .|++|.+..+=++ .. . .+ +.+++ .++++...+..
T Consensus 64 ~~~~~iytG~~-PSG~-lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h-a~--~---~~-~~~~e-~~~~~~~~~~~ 129 (368)
T PRK12285 64 GKPFAVYTGFM-PSGP-MHIGHKMV---FDELKWHQE-FGANVYIPIADDE-AY--A---AR-GLSWE-ETREWAYEYIL 129 (368)
T ss_pred CCCeEEEEccC-CCCC-ccHHHHHH---HHHHHHHHh-cCCCEEEEecchH-HH--h---cC-CCCHH-HHHHHHHHHHH
Confidence 45677776653 5587 99999643 444666666 7888766655333 22 1 11 33333 45556666778
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..|
T Consensus 130 ~~lA~G~Dp~ 139 (368)
T PRK12285 130 DLIALGFDPD 139 (368)
T ss_pred HHHHhCCCcc
Confidence 9999998554
No 140
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=84.75 E-value=0.92 Score=50.99 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=16.1
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+.+|+..+|.||. -|+..+|=
T Consensus 167 ~~ad~vpvG~DQ~-~h~~l~Rd 187 (329)
T PRK08560 167 LDVDIAVGGMDQR-KIHMLARE 187 (329)
T ss_pred hCCCEEEechhHH-HHHHHHHH
Confidence 5799999999996 56555553
No 141
>PLN02486 aminoacyl-tRNA ligase
Probab=81.90 E-value=7 Score=44.77 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=47.1
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++|++..|. -|+|..|||||+.. ...+..+++..|..+....+ |. +....+ +.+ .+.+.++.....+
T Consensus 71 ~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~~-~~~-~e~i~~~~~en~~ 138 (383)
T PLN02486 71 GEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----EKFLWK-NLS-VEESQRLARENAK 138 (383)
T ss_pred CCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----HHHhhc-CCC-HHHHHHHHHHHHH
Confidence 4567777665 46663399999554 44445555566766666544 43 333333 333 3445566666777
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 139 ~iiA~G~dp~ 148 (383)
T PLN02486 139 DIIACGFDVE 148 (383)
T ss_pred HHHHhCCCCc
Confidence 8888998655
No 142
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=80.69 E-value=1.7 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=15.7
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+.+|+..+|.||...|. .+|=
T Consensus 209 l~adivpvG~DQ~~~~~-LaRd 229 (383)
T PTZ00126 209 LKADICQLGMDQRKVNM-LARE 229 (383)
T ss_pred cCCCEEEeCccHHHHHH-HHHH
Confidence 57999999999975443 3663
No 143
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.83 E-value=0.63 Score=53.19 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=12.3
Q ss_pred CCceeeecccchhhhh
Q 002411 601 SPVDVYVGGAEHAVLH 616 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~H 616 (926)
.-+|+-+||.||=.+|
T Consensus 179 L~~dlq~GG~DQ~~ni 194 (401)
T COG0162 179 LNKDLQLGGSDQWGNI 194 (401)
T ss_pred HccchhcCChHHHHHH
Confidence 4688999999994444
No 144
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=77.71 E-value=3.6 Score=51.30 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccC--CCC-
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD- 272 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~--~~~- 272 (926)
+.=..+...|.+.|++.+.+.... . =|+|+|||.+++-.-.+|||+++..+++..++..+ .++
T Consensus 315 eAR~kIv~~L~~~GlLvk~e~~~h------------~--V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f 380 (877)
T COG0525 315 EARKKIVEDLEEQGLLVKIEPHKH------------S--VGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKF 380 (877)
T ss_pred HHHHHHHHHHHhCCCeEeeeeccc------------c--CccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceE
Confidence 344667889999999998764321 1 14566677777777889999999999999999888 555
Q ss_pred CcHHHHHHHHhhhcc
Q 002411 273 WPESVKEMQRNWIGR 287 (926)
Q Consensus 273 ~p~~~~~~~~~~i~~ 287 (926)
.|++....-.+|+..
T Consensus 381 ~P~~~~~~~~~W~~~ 395 (877)
T COG0525 381 VPERMEKRYEDWMEN 395 (877)
T ss_pred ecHHHHHHHHHHHhh
Confidence 889999999999853
No 145
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=76.53 E-value=1.7 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=16.2
Q ss_pred CCceeeecccchhhhhHHHhhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw 623 (926)
+-+|+...|.||. -|+-.+|=.
T Consensus 138 ~~~d~vpvG~DQ~-~h~elaRdi 159 (328)
T TIGR00233 138 YQADLVPVGIDQD-QHLELTRDL 159 (328)
T ss_pred cCCCeeecccccH-HHHHHHHHH
Confidence 4689999999996 566556543
No 146
>PLN02959 aminoacyl-tRNA ligase
Probab=75.96 E-value=3.9 Score=53.33 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhh--hhHHHHhhccCCCC
Q 002411 195 YKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKIT--EYADRLLDDLDDLD 272 (926)
Q Consensus 195 ~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~--~y~~~l~~~l~~~~ 272 (926)
.+.-..+...|.++|++.....+ ..+.|.|||.+++-+-..|||++++ ..++..++.++.+.
T Consensus 494 ~eAr~~Ii~~L~~~G~l~~~~ep----------------~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~ 557 (1084)
T PLN02959 494 QEAKPLIKKKLIEAGQAILYSEP----------------EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMN 557 (1084)
T ss_pred HHHHHHHHHHHHhCCCceeeeEc----------------CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccE
Confidence 34455677889999976532221 1245688999999999999999998 68999999998888
Q ss_pred -CcHHHHHHHHhhhc
Q 002411 273 -WPESVKEMQRNWIG 286 (926)
Q Consensus 273 -~p~~~~~~~~~~i~ 286 (926)
.|+..++...+||.
T Consensus 558 ~~P~~~~~~~~~wl~ 572 (1084)
T PLN02959 558 LYSDETRHGFEHTLG 572 (1084)
T ss_pred EECHHHHHHHHHHHh
Confidence 59999888899884
No 147
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=75.92 E-value=18 Score=35.81 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=59.9
Q ss_pred hcCchhhhHHhhhcCCcCCCCcCCchhhHHH--------HHHHHHHHHHHhcCCCCCCCCCCCccc--CCCCchHHHHHH
Q 002411 700 EYGADSLRLYEMFMGPFRDSKTWNTSGIEGV--------HRFLGRMWRLIVGSSLPDGTFKGGTVV--NDEEPTLEQLCT 769 (926)
Q Consensus 700 ~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~--------~r~L~r~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~ 769 (926)
+.|.|++||.+++..+ ..+.+|+.+.+... .--..|+.+++..... .......... -..+.+..++..
T Consensus 2 ~i~~~a~~~~~l~~~~-~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~-~~~~~~~~~~~ll~~~~E~~L~~~ 79 (156)
T cd07956 2 EVGVGAVKYQDLSNKR-IKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE-TIEAEADADLSLLPEPDERDLILL 79 (156)
T ss_pred ccchhHHHHHHHhcCC-CCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC-cCccccccchhhcCCHHHHHHHHH
Confidence 4688999999996544 56666775553211 1112344444422110 0000000000 011223445666
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Q 002411 770 LHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE 804 (926)
Q Consensus 770 l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~ 804 (926)
+..+.+.+..++.+.+++.++..+.++....++|+
T Consensus 80 l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ff 114 (156)
T cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFY 114 (156)
T ss_pred HHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 77777777888889999999999999998888875
No 148
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=74.35 E-value=4.2 Score=40.03 Aligned_cols=31 Identities=35% Similarity=0.437 Sum_probs=23.5
Q ss_pred HHHHHHHcCCcccccccccccChHHHHHHHHhC
Q 002411 124 LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETG 156 (926)
Q Consensus 124 ~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g 156 (926)
++||+|+.|++|.+..+.++..+ ...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~i--l~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDEI--LELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHHH--HHHhhhCC
Confidence 68999999999999997766544 44555544
No 149
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=74.16 E-value=2.9 Score=47.94 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
.+..|+ -|+|+.||+||+.. --.+.|+++ .|++|.+..|
T Consensus 32 ~vy~G~-dPTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 32 KLYVGF-DPTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred EEEEee-CCCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 344343 36662389998664 223445554 6888876664
No 150
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=73.35 E-value=2.6 Score=47.40 Aligned_cols=16 Identities=50% Similarity=0.559 Sum_probs=13.2
Q ss_pred cccccccCCCccCcch
Q 002411 681 AHKMSKSRGNVVNPDD 696 (926)
Q Consensus 681 G~KMSKSkGNvv~p~e 696 (926)
+.|||||.+|.|...|
T Consensus 194 ~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 194 KAKMSKSLGNAIYLSD 209 (333)
T ss_pred CCcCCCCCCCeeeeeC
Confidence 3799999999887655
No 151
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=73.18 E-value=3.5 Score=45.27 Aligned_cols=65 Identities=25% Similarity=0.349 Sum_probs=39.1
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
-|+|. |||||..+.+.. +.++++ .|+++.+..+ |-|.+- .... ..+..++++..+..++.++|+.
T Consensus 7 ~PTG~-lHLG~~~~al~~--~~~lQ~-ag~~~~~~Ia-D~ha~t------~~~~-~~~~~~~~~~~~~~~~lA~G~d 71 (280)
T cd00806 7 QPSGS-LHLGHYLGAFRF--WVWLQE-AGYELFFFIA-DLHALT------VKQL-DPEELRQNTRENAKDYLACGLD 71 (280)
T ss_pred CCCch-hhHHHHHHHHHH--HHHHHh-CCCCEEEEec-chHHHh------CCCC-CHHHHHHHHHHHHHHHHHcCCC
Confidence 36786 999998885443 333433 3888766654 333331 0111 2345667777788888888883
No 152
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=73.07 E-value=2.6 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.3
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+.+|+..+|.||. .|+..+|=
T Consensus 137 ~~~divpvG~DQ~-~h~elaRd 157 (333)
T PRK00927 137 YKADLVPVGEDQK-QHLELTRD 157 (333)
T ss_pred cCCCEEeeccchH-HHHHHHHH
Confidence 4789999999996 56666664
No 153
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=72.96 E-value=2.5 Score=48.19 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=14.8
Q ss_pred CceeeecccchhhhhHHHhhh
Q 002411 602 PVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 602 PvDl~v~G~D~~~~HLly~rf 622 (926)
-.++...|.||. -|+-.+|=
T Consensus 203 ~~~lvPvG~DQ~-~h~~ltRd 222 (368)
T PRK12285 203 KPTLVPVGIDQD-PHIRLTRD 222 (368)
T ss_pred CceEEEeccchH-HHHHHHHH
Confidence 567999999996 56555554
No 154
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=72.15 E-value=8.3 Score=42.31 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=17.7
Q ss_pred ccccccCC-CccCcchhhhhcCchhhhHHhh
Q 002411 682 HKMSKSRG-NVVNPDDVVTEYGADSLRLYEM 711 (926)
Q Consensus 682 ~KMSKSkG-Nvv~p~eii~~yGaD~lRl~ll 711 (926)
.|||||.+ |.|...+ .++.+|=-+.
T Consensus 190 ~KMSKS~~~~~I~L~d-----~~~~i~~KI~ 215 (280)
T cd00806 190 KKMSKSDPNNAIFLTD-----SPKEIKKKIM 215 (280)
T ss_pred CcccCCCCCCeEEeeC-----CHHHHHHHHH
Confidence 69999998 8887765 4455554444
No 155
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=70.91 E-value=6.4 Score=43.00 Aligned_cols=14 Identities=21% Similarity=0.045 Sum_probs=12.2
Q ss_pred cccccccCCCccCc
Q 002411 681 AHKMSKSRGNVVNP 694 (926)
Q Consensus 681 G~KMSKSkGNvv~p 694 (926)
|.|||||.+|.+..
T Consensus 196 G~KMSKS~~~~i~l 209 (273)
T cd00395 196 GPKFGKSESGPKWL 209 (273)
T ss_pred CCcCCCCCCCCccc
Confidence 88999999998754
No 156
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.14 E-value=3.8 Score=45.29 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=46.0
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCC-cccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGY-NVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~-~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
++.|++| =-|+|. |||||..+.+. .+++...++ ++.+ +=.|.|.+-+ .+..+.+..++++.....+
T Consensus 5 ~~~vlSG-~~PSG~-lHLGny~ga~~----~~v~~q~~~~~~f~-~IaDlha~t~------~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 5 KFRVLSG-IQPSGK-LHLGNYLGAIR----NWVLLQEEYYECFF-FIADLHAITV------RQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CceEEec-CCCCCC-cchhHhHHHHH----HHHHHhcccCceEE-EEecHHHhhc------CCCChHHHHHHHHHHHHHH
Confidence 3445544 347897 99999888643 455555664 5544 4455554422 1222335566677777778
Q ss_pred HHHcCcccc
Q 002411 174 LKSLGFSYD 182 (926)
Q Consensus 174 l~~lgi~~D 182 (926)
+-++|+..+
T Consensus 72 ~LA~GiDP~ 80 (314)
T COG0180 72 YLAVGLDPE 80 (314)
T ss_pred HHHhccCcc
Confidence 889998666
No 157
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=67.04 E-value=7.6 Score=38.54 Aligned_cols=94 Identities=23% Similarity=0.268 Sum_probs=50.2
Q ss_pred HHHHHHHcCCcccccc-cccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHH
Q 002411 124 LARLKRMQGYNVLHPM-GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIF 202 (926)
Q Consensus 124 ~~Ry~r~~G~~V~~~~-G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f 202 (926)
+||++|+.||++.+.. ..|. .+...+.+.|. .+..+-...+++. ++|+.. +.-.+....+...++.
T Consensus 18 LARwLRllGydt~~~~~~~d~---~i~~i~~~e~r---IllTRDr~L~~r~--k~g~~~-----i~i~~~s~~~Ql~e~~ 84 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDD---EIILIAKKEGR---ILLTRDRELYKRA--KLGIKA-----ILIRSDSIEEQLAEFL 84 (165)
T ss_pred HHHHHHHcCCceeeeccCCcH---HHHHHHhcCCe---EEEeccHHHHHHh--hccCce-----EEEeCCCHHHHHHHHH
Confidence 7999999999999986 4442 23333444331 1111111122222 466632 3333344555566666
Q ss_pred HHHhhCCcEEEeccC-ccccCCCCccc---Cchhhc
Q 002411 203 LQLLKRGLAYQAEVP-VNWCPALGTVL---ANEEVV 234 (926)
Q Consensus 203 ~~L~~~Gliy~~~~~-v~wc~~~~t~l---s~~ev~ 234 (926)
.+|-.++ ...+ ..=||.|++.| +-+||+
T Consensus 85 ~~~~l~~----~~~~e~~RCp~CN~~L~~vs~eev~ 116 (165)
T COG1656 85 ARLGLKP----RLFPEFSRCPECNGELEKVSREEVK 116 (165)
T ss_pred HHhccch----hcccccccCcccCCEeccCcHHHHh
Confidence 6665555 2223 45699999887 445544
No 158
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=65.21 E-value=4.8 Score=42.96 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=26.0
Q ss_pred cccccccCCCccCcchhhh-hcCchhhhHHhhhcCC
Q 002411 681 AHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 715 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~~ 715 (926)
|.||||+.|| .+...+.+ .|-+.+++-|++..+.
T Consensus 160 g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~ 194 (239)
T cd00808 160 GKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGW 194 (239)
T ss_pred CCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCC
Confidence 9999999999 45555544 4788999998886553
No 159
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=64.78 E-value=9.8 Score=44.10 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=21.9
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|.|||||.||.|..++= +.+++.++=+++.
T Consensus 228 G~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 257 (410)
T PRK13354 228 GTKMGKSAGGAIWLDPE--KTSPYEFYQFWMN 257 (410)
T ss_pred CCccCCCCCCceeccCC--CCCHHHHHHHHHc
Confidence 88999999999887653 4455666655553
No 160
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=63.76 E-value=3.2 Score=47.36 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=44.4
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHH-HcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 104 YPSGAGLHVGHPLGYTATDILARLKR-MQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r-~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
-|+|. +||||..+.+ + .|.. ..|+++.+. =.|-|=+-. ...++ +..+++...+...+.++|+..+
T Consensus 10 qPSG~-~HLGnylG~i-k----~wv~lq~~~~~~~~-IADlHAlt~------~~~d~-~~ir~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 10 RPTGR-LHLGHYHGVL-K----NWVKLQHEYECFFF-VADWHALTT------HYETP-EVIEKNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred CCCCc-chHHHHHHHH-H----HHHHHhcCCcEEEE-eecHHHHhC------CCCCH-HHHHHHHHHHHHHHHHcCCCcc
Confidence 47897 9999988843 2 3333 357776433 334432211 11133 3455666778889999999776
Q ss_pred ccCccccCC-hhH
Q 002411 183 WNREISTIE-PAY 194 (926)
Q Consensus 183 w~~~~~T~d-~~y 194 (926)
=...|.-++ |+|
T Consensus 76 k~~if~QS~v~eh 88 (398)
T PRK12283 76 QATLFIQSKVPEH 88 (398)
T ss_pred ceEEEECCCchHH
Confidence 333444333 544
No 161
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=63.16 E-value=16 Score=41.20 Aligned_cols=74 Identities=22% Similarity=0.244 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
+++++.| =-|+|. +||||... --.+.++++ .|++|.+..+ |-|.+-. . .. ..+..+++...+..++
T Consensus 30 ~~~v~~G-~~PTG~-lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia-D~ha~~~-~-----~~-~~~~i~~~~~~~~~~~ 95 (329)
T PRK08560 30 EPKAYIG-FEPSGK-IHLGHLLT---MNKLADLQK-AGFKVTVLLA-DWHAYLN-D-----KG-DLEEIRKVAEYNKKVF 95 (329)
T ss_pred CCEEEEc-cCCCCc-chhhhhHH---HHHHHHHHH-CCCeEEEEEc-cchhhcC-C-----CC-CHHHHHHHHHHHHHHH
Confidence 3444444 357797 99999542 223666666 4888765544 3333211 0 01 2345667777888899
Q ss_pred HHcCcccc
Q 002411 175 KSLGFSYD 182 (926)
Q Consensus 175 ~~lgi~~D 182 (926)
.++|+..+
T Consensus 96 ~A~G~dp~ 103 (329)
T PRK08560 96 EALGLDPD 103 (329)
T ss_pred HHcCCChh
Confidence 99998554
No 162
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.95 E-value=29 Score=38.52 Aligned_cols=14 Identities=43% Similarity=0.332 Sum_probs=11.4
Q ss_pred c-ccccccCCC-ccCc
Q 002411 681 A-HKMSKSRGN-VVNP 694 (926)
Q Consensus 681 G-~KMSKSkGN-vv~p 694 (926)
| .|||||.+| +|..
T Consensus 195 g~~KMSkS~~ns~I~L 210 (314)
T COG0180 195 GPGKMSKSDPNSAIFL 210 (314)
T ss_pred CCCcccccCCCCeeec
Confidence 5 899999999 6644
No 163
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=57.20 E-value=8.1 Score=42.16 Aligned_cols=28 Identities=32% Similarity=0.201 Sum_probs=18.8
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEM 711 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll 711 (926)
|+|||||.+|.++ ..+ .-.++.++=.+.
T Consensus 193 G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~ 220 (269)
T cd00805 193 GGKMSKSEGNAIW-DPV--LDSPYDVYQKIR 220 (269)
T ss_pred CCcccCCCCCccc-ccC--CCCHHHHHHHHH
Confidence 8999999999884 222 234555555555
No 164
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.94 E-value=12 Score=44.84 Aligned_cols=75 Identities=23% Similarity=0.443 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCC-cH
Q 002411 197 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-PE 275 (926)
Q Consensus 197 ~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~-p~ 275 (926)
.-..++..|.+.|.+.+....++ .++.||+++.|...|..+.||.++....++|++--+...| |+
T Consensus 374 aDK~Ii~~lk~~g~lv~~~~i~H--------------sYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~ 439 (1070)
T KOG0434|consen 374 ADKLIIRSLKASGRLVKASQITH--------------SYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQ 439 (1070)
T ss_pred chHHHHHHHHhcCceeeeeeeee--------------ccCceecCCChHHHhhccHhhhhHHHHHHHHHhcccccccCCh
Confidence 34456778888888877655443 2678999999999999999999999999999998888886 55
Q ss_pred HHHH-HHHhhh
Q 002411 276 SVKE-MQRNWI 285 (926)
Q Consensus 276 ~~~~-~~~~~i 285 (926)
.+|. .-.||+
T Consensus 440 ~ikeKRF~NWL 450 (1070)
T KOG0434|consen 440 NIKEKRFANWL 450 (1070)
T ss_pred hhhHHHHHHHH
Confidence 5643 447887
No 165
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=56.28 E-value=31 Score=38.74 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=42.9
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++.| =-|+|. +||||..+.+. .++....|++|.+..+= -|-+-. ..+ +-.+..++....+..++.+
T Consensus 4 ~v~~G-~~PTG~-~HlG~~l~~~~----~~~~~q~~~~~~i~IaD-~ha~t~-----~~~-~~~~~~~~~~~~~~~~~lA 70 (328)
T TIGR00233 4 RVLTG-IQPSGK-MHLGHYLGAIQ----TKWLQQFGVELFICIAD-LHAITV-----KDN-TDPDALRKAREELAADILA 70 (328)
T ss_pred EEEEe-eCCCcH-hHHHHHHHHHH----HHHHHhCCCCEEEEeec-chhhcC-----CCC-CCHHHHHHHHHHHHHHHHH
Confidence 34444 346786 99999777543 34444679888666543 332211 111 1223345556667778889
Q ss_pred cCcccc
Q 002411 177 LGFSYD 182 (926)
Q Consensus 177 lgi~~D 182 (926)
.|+..|
T Consensus 71 ~GlDp~ 76 (328)
T TIGR00233 71 VGLDPK 76 (328)
T ss_pred hCcChh
Confidence 999776
No 166
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=55.97 E-value=7.4 Score=39.09 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.1
Q ss_pred hhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeecc
Q 002411 206 LKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMR 251 (926)
Q Consensus 206 ~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~ 251 (926)
.+++-.+.+.-+++||.+|.-+|-. ..|..||..++...++
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~-----~~c~~cg~~~~~l~LT 42 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLG-----RRCSVCGSKVEELRLT 42 (202)
T ss_pred CcccceeecccceeehhhCCCcccc-----ccccccCCcceEEEeC
Confidence 4567788999999999999988754 3688888766555444
No 167
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=55.06 E-value=20 Score=41.43 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccc
Q 002411 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183 (926)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw 183 (926)
-|+|. |||||..+.+.. ..+.+...|+++.+.. -|-|-+- ...+|.+ ..+++..+...+...|+..+=
T Consensus 10 qPTG~-lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT-------~~~dp~~-lr~~~~e~aa~~LA~GlDPek 77 (431)
T PRK12284 10 TTTGT-PHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI-------KCDDPAR-IQRSTLEIAATWLAAGLDPER 77 (431)
T ss_pred cCCCc-chHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc-------CCCCHHH-HHHHHHHHHHHHHHhCCCccc
Confidence 47898 999997776542 4445555688875543 3444331 1123433 445556678889999996663
Q ss_pred cCccccCC-hhHHHHHHHHHHHHhhCCcEEE
Q 002411 184 NREISTIE-PAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 184 ~~~~~T~d-~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
...|.-++ |++.+ ..|++..+-..|.+-|
T Consensus 78 ~~if~QSdvpeh~E-L~wiL~~it~~g~L~R 107 (431)
T PRK12284 78 VTFYRQSDIPEIPE-LTWLLTCVAGKGLLNR 107 (431)
T ss_pred eEEEECCcchhHHH-HHHHHHhhhhHHHHHh
Confidence 33455455 66544 4677776655554433
No 168
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=54.69 E-value=18 Score=41.98 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=42.4
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc------cccChHHHHHHHHhCCCchHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW------DAFGLPAEQYAIETGTHPKITTLRNIN 168 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~------D~~Glpie~~a~~~g~~~~~~~~~~~~ 168 (926)
++.+..|+ -|+|+.||+||... -..+.+++ ..|+++++..|= |..|-+.+ ......+.+..+.+
T Consensus 33 ~~~vy~G~-dPTg~slHlGhlv~---l~~l~~lQ-~~G~~~~~ligd~ta~igDpsgk~~~-----r~~l~~e~i~~n~~ 102 (408)
T PRK05912 33 PLRIYLGF-DPTAPSLHLGHLVP---LLKLRRFQ-DAGHKPIALIGGFTGMIGDPSGKSET-----RKLLTREQVAENAE 102 (408)
T ss_pred CCEEEEee-cCCCCCccHHhHHH---HHHHHHHH-HCCCcEEEEEcCceeEcCCCCCCchh-----hccCCHHHHHHHHH
Confidence 34455554 35663399999773 23455555 479988777653 22222211 11223455677788
Q ss_pred HHHHHHHHcCcc
Q 002411 169 RFRTQLKSLGFS 180 (926)
Q Consensus 169 ~~~~~l~~lgi~ 180 (926)
.+++++ +.|+.
T Consensus 103 ~i~~ql-~~~ld 113 (408)
T PRK05912 103 TIKEQL-FKFLD 113 (408)
T ss_pred HHHHHH-HHhcC
Confidence 888877 55553
No 169
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=52.04 E-value=13 Score=45.61 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=16.0
Q ss_pred CCceeeecccchhhhhHHHhhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw 623 (926)
+.+|+..+|.||.. |+..+|=+
T Consensus 174 l~adivpvG~DQ~q-h~eLaRdi 195 (682)
T PTZ00348 174 LKADICQLGLDQRK-VNMLAREY 195 (682)
T ss_pred cCCCEEEeCccHHH-HHHHHHHH
Confidence 57899999999964 54556643
No 170
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.30 E-value=21 Score=41.06 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccC---hHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG---LPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G---lpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.+.|+ |+ =|+|+.||+||.... ...|-+...|++|....| |-|| .|. -+..+...-.++....+++.+
T Consensus 33 ~~~Y~--Gf-DPTa~slHlGhlv~l----~kL~~fQ~aGh~~ivLig-d~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i 103 (401)
T COG0162 33 LRVYI--GF-DPTAPSLHLGHLVPL----MKLRRFQDAGHKPIVLIG-DATAMIGDPS-GKSEERKLLTRETVLENAETI 103 (401)
T ss_pred ceEEE--ee-CCCCCccchhhHHHH----HHHHHHHHCCCeEEEEec-ccceecCCCC-CCHHHHhhccHHHHHHHHHHH
Confidence 34555 33 367744999997653 223445668999988877 2333 332 111111122244555666666
Q ss_pred HHHHH
Q 002411 171 RTQLK 175 (926)
Q Consensus 171 ~~~l~ 175 (926)
++|+.
T Consensus 104 ~~ql~ 108 (401)
T COG0162 104 KKQLG 108 (401)
T ss_pred HHHhc
Confidence 65554
No 171
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=44.59 E-value=35 Score=38.46 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=41.5
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
-|+|. |||||..+.+.+ +.+++. +++|.+..+ |-|-+-. ..+ .+...+++..+..++.++|+..+
T Consensus 9 ~PTG~-lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia-D~ha~t~-------~~~-~~~i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 9 QPTGK-LHLGNYLGAIKN--WVELQD--EYECFFCIA-DLHALTV-------PQD-PEELRENTRELAADYLACGIDPE 73 (333)
T ss_pred CCCcc-chHHhHHHHHHH--HHHHHh--cCCeEEEEe-cHHHHhC-------CCC-HHHHHHHHHHHHHHHHeEccChh
Confidence 47898 999998887543 555554 377766553 3222211 112 34566677778889999999765
No 172
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=41.69 E-value=23 Score=41.24 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=33.9
Q ss_pred EeecceeEeccCCccccccccccccccCCCccCcchhhh-hcCchhhhHHhhhcCC
Q 002411 661 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMGP 715 (926)
Q Consensus 661 ~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~~ 715 (926)
+.| +.++++.+ |+||||..|.. +..++.+ .|-+++++=|++..+.
T Consensus 222 f~H-lpli~~~~--------g~KLSKR~~~~-~v~~~r~~G~~PeAi~n~l~~lG~ 267 (433)
T PRK12410 222 YAH-LPIILNEE--------GKKMSKRDNAS-SVKWLLEQGFLPSAIANYLILLGN 267 (433)
T ss_pred EEE-eeeeeCCC--------CCeeecccChh-hHHHHHHCCCCHHHHHHHHHHhCC
Confidence 444 57788876 99999999853 5555554 4899999999887763
No 173
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=40.63 E-value=2.3e+02 Score=24.71 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH-hc
Q 002411 725 SGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAA-YK 802 (926)
Q Consensus 725 ~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~~l~~f~~~~-~~ 802 (926)
+.+.++.+.+.|+++.+... . . . ....+.+++.++|+ +++++.|+..|++++..+ +.
T Consensus 2 e~L~~A~~~l~rl~~~l~~~----~----------~-~------~~~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALP----D----------G-P------DAEALVARLREALADDLDTPKALAALDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhc----c----------c-c------cHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhc
Confidence 56788888888888776321 0 0 0 12345688999995 699999999999999887 54
Q ss_pred cc---cchHHHHHHHHHHh
Q 002411 803 WE---KHPRKIIEPFILLL 818 (926)
Q Consensus 803 ~~---~~~~~~l~~l~~lL 818 (926)
-. ...+..++.+.-+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~ 79 (81)
T cd07955 61 GGTDPDAPALVRTAVDALL 79 (81)
T ss_pred CCCCcccHHHHHHHHHHHc
Confidence 21 23445555554443
No 174
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=40.01 E-value=38 Score=27.98 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=22.6
Q ss_pred HHHHHHh-cccHHHHHHHHHHHHHHHhc
Q 002411 776 KVTEEIE-GTRFNTGISAMMEFINAAYK 802 (926)
Q Consensus 776 ~v~~~~e-~~~f~~ai~~l~~f~~~~~~ 802 (926)
++.++|+ +|+.+.|++.|++++..+|+
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~ 28 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINR 28 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHH
Confidence 3678885 69999999999999999887
No 175
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=39.93 E-value=24 Score=41.67 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=32.5
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 714 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~ 714 (926)
..++++.+ |.||||.+| .++.+++++. |-+.+++-|++..+
T Consensus 231 ~p~l~~~~--------g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG 272 (470)
T TIGR00464 231 LPMILDED--------GKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLG 272 (470)
T ss_pred EeeeecCC--------CccccccCC-CccHHHHHHCCCCHHHHHHHHHHcC
Confidence 45656554 899999999 8889999887 57889998887654
No 176
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=39.36 E-value=25 Score=35.13 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc---------ccccCccccCC-hhHHHHHHHHHHHHhh---CCcEEE
Q 002411 147 PAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS---------YDWNREISTIE-PAYYKWTQWIFLQLLK---RGLAYQ 213 (926)
Q Consensus 147 pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~---------~Dw~~~~~T~d-~~y~~~v~~~f~~L~~---~Gliy~ 213 (926)
..|.-|...|++..+ +.+....|...|+- --|-..+++.+ ..-...+.+-+.++.+ +-+=+.
T Consensus 30 tdEeLa~~Lgi~~~~-----VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~e 104 (158)
T TIGR00373 30 TDEEISLELGIKLNE-----VRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEFE 104 (158)
T ss_pred CHHHHHHHHCCCHHH-----HHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666665443 23333334444442 13434444444 2333445554444433 555566
Q ss_pred eccCccccCCCCcccCchhhc--cCccccCCCCeEE
Q 002411 214 AEVPVNWCPALGTVLANEEVV--DGVSERGGHPVIR 247 (926)
Q Consensus 214 ~~~~v~wc~~~~t~ls~~ev~--~~~~~~~~~~~~~ 247 (926)
....-+.||.|+.-++-.|.. +-.|+.||.+.+.
T Consensus 105 ~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 105 TNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDY 140 (158)
T ss_pred cCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeee
Confidence 677788899999999888875 3469999997653
No 177
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=38.92 E-value=63 Score=37.18 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=19.8
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.+|.|...+ .+|.+|=-++.
T Consensus 262 g~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 262 GQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 7899999999887655 45555555553
No 178
>PLN02886 aminoacyl-tRNA ligase
Probab=38.19 E-value=41 Score=38.63 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=49.7
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccc
Q 002411 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDW 183 (926)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw 183 (926)
-|+|. +||||..+.+. -+.+++. |+++.+. =-|-|-+- ...+++ ..++++..+...+.++|+..+=
T Consensus 54 qPSG~-lHLGnylGai~--~~v~lQ~--~~~~~~~-IADlHAlt-------~~~~~~-~lr~~~~~~~a~~lA~GlDP~k 119 (389)
T PLN02886 54 QPTGS-IHLGNYLGAIK--NWVALQE--TYDTFFC-VVDLHAIT-------LPHDPR-ELGKATRSTAAIYLACGIDPSK 119 (389)
T ss_pred CCCCc-cHHHHHHHHHH--HHHHHhc--cCCEEEE-EecHHHhh-------CCCCHH-HHHHHHHHHHHHHHHcCcCccc
Confidence 36797 99999877653 2444543 8887433 33444331 122333 4556666788899999997663
Q ss_pred cCccccCC-hhHHHHHHHHHHH
Q 002411 184 NREISTIE-PAYYKWTQWIFLQ 204 (926)
Q Consensus 184 ~~~~~T~d-~~y~~~v~~~f~~ 204 (926)
...|.-++ +++.+ ..|++..
T Consensus 120 s~if~QS~v~e~~e-L~wil~~ 140 (389)
T PLN02886 120 ASVFVQSHVPAHAE-LMWLLSC 140 (389)
T ss_pred eEEEEeCCCchhHH-HHHHHHh
Confidence 33344344 55544 3555554
No 179
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=37.96 E-value=39 Score=38.68 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
-|-|.|. ||+|-+|+.+.-=++|| ...|.-++.+=-+|-. ..+....+++.+.|+-+|+..
T Consensus 39 APSPTGf-LHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~----------------R~v~gs~e~i~~~L~w~nl~~ 99 (524)
T KOG1149|consen 39 APSPTGF-LHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQK----------------RLIRGSEEAIYEDLKWANLDW 99 (524)
T ss_pred cCCCCcc-eehhhHHHHHHHHHHHH--hcCCeEEEEecccccc----------------ccccchHHHHHHHHHhcCCCc
Confidence 5889998 99999999776655554 2356555554433321 122223456788999999954
Q ss_pred cccCcccc---CCh----hHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNREIST---IEP----AYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~~~~T---~d~----~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
| .--.- .-| +--+.-+..-.+|.+.|.+|+-
T Consensus 100 D--EgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC 137 (524)
T KOG1149|consen 100 D--EGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC 137 (524)
T ss_pred c--cCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEe
Confidence 4 43211 111 2223344556789999999984
No 180
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.83 E-value=69 Score=29.70 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=40.9
Q ss_pred HHHHHcCccccccCccccCChhHHHHHHHHHHHHhhC-CcEEEeccCccc
Q 002411 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR-GLAYQAEVPVNW 220 (926)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~-Gliy~~~~~v~w 220 (926)
..|+.||+++.|...--|......+.+-.++..+.+. |+.|-+.....|
T Consensus 24 ~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~ 73 (119)
T COG3171 24 GEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDW 73 (119)
T ss_pred HHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceee
Confidence 4689999999998877777778888888888888776 999999877666
No 181
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=36.58 E-value=79 Score=35.63 Aligned_cols=14 Identities=57% Similarity=0.669 Sum_probs=12.1
Q ss_pred cccccccCCCccCc
Q 002411 681 AHKMSKSRGNVVNP 694 (926)
Q Consensus 681 G~KMSKSkGNvv~p 694 (926)
|+|||||.+|.|..
T Consensus 200 g~KMSKS~~n~I~L 213 (332)
T PRK12556 200 GRKMSKSYGNVIPL 213 (332)
T ss_pred CCCCCCCCCCcccc
Confidence 78999999998843
No 182
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=35.41 E-value=94 Score=35.74 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
+.++.|+ =|+|. +||||. .+..--+.+++ -.|++|.+..| |-|.+-. .+.|.+++. .+.....+...+.
T Consensus 67 ~~v~~G~-~PTG~-lHLG~g--~i~~~~~~~lq-~~G~~v~~~Ia-D~hA~~~----~~~g~~l~~-i~~~~~~~~~~~~ 135 (383)
T PTZ00126 67 PICYDGF-EPSGR-MHIAQG--ILKAINVNKLT-KAGCVFVFWVA-DWFALLN----NKMGGDLEK-IRKVGEYFIEVWK 135 (383)
T ss_pred CEEEEEE-CCCCc-ccccch--HhHhHHHHHHH-hCCCeEEEEEc-cceeecC----CCCCCCHHH-HHHHHHHHHHHHH
Confidence 3444443 47887 999992 21111233333 44888866654 3333210 122333333 3455566777899
Q ss_pred HcCcccc
Q 002411 176 SLGFSYD 182 (926)
Q Consensus 176 ~lgi~~D 182 (926)
.+|+..+
T Consensus 136 A~GlDp~ 142 (383)
T PTZ00126 136 AAGMDMD 142 (383)
T ss_pred HhCCCcc
Confidence 9999655
No 183
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=34.85 E-value=34 Score=40.75 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=38.3
Q ss_pred cccccccC------CCccC---------cchhhh-hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH
Q 002411 681 AHKMSKSR------GNVVN---------PDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 732 (926)
Q Consensus 681 G~KMSKSk------GNvv~---------p~eii~-~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r 732 (926)
|.||||++ .+.|+ ...+-. .|-++|+|-|++..|....+...+.+.+..+.|
T Consensus 244 ~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~nR 311 (523)
T PLN03233 244 NTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENK 311 (523)
T ss_pred CCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHHH
Confidence 89999998 45553 444444 388999999999888776666667677776655
No 184
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=34.81 E-value=33 Score=40.10 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=34.6
Q ss_pred EEeecceeEeccCCccccccccccccccCCCccCcchhhh-hcCchhhhHHhhhcC
Q 002411 660 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 714 (926)
Q Consensus 660 v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~ 714 (926)
.+.| ..++++++ |+||||..|. ++..++.+ .|-+++++=|++..+
T Consensus 226 ~f~H-~pli~~~~--------g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 226 VFAH-LSLLTGAD--------GKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred eEEE-cccccCCC--------cccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 4455 67888876 9999999876 46666655 599999999988765
No 185
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.49 E-value=22 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=15.2
Q ss_pred ccCCCCcccCchhhccCccccCCCC
Q 002411 220 WCPALGTVLANEEVVDGVSERGGHP 244 (926)
Q Consensus 220 wc~~~~t~ls~~ev~~~~~~~~~~~ 244 (926)
+||+|+..+++... .|..||.+
T Consensus 1 ~Cp~CG~~~~~~~~---fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAK---FCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCc---chhhhCCc
Confidence 68899988876532 46667664
No 186
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=33.14 E-value=33 Score=40.67 Aligned_cols=41 Identities=20% Similarity=0.324 Sum_probs=32.8
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 714 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~ 714 (926)
..++++.+ |.||||.+| .++..++++. |-+.+++-|++..+
T Consensus 241 ~pli~~~~--------g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG 282 (476)
T PRK01406 241 LPLILGPD--------GKKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLG 282 (476)
T ss_pred eeeeeCCC--------CCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhC
Confidence 45666655 999999999 7889998886 68899998887654
No 187
>PLN02886 aminoacyl-tRNA ligase
Probab=33.02 E-value=45 Score=38.32 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=16.7
Q ss_pred CCceeeecccchhhhhHHHhhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw 623 (926)
+-+|+...|.||. -|+-.+|=.
T Consensus 183 ~~a~~VPVG~DQ~-qH~eLtRdi 204 (389)
T PLN02886 183 YQADLVPVGEDQK-QHLELTRDI 204 (389)
T ss_pred cCCCeEEEccchH-HHHHHHHHH
Confidence 5789999999996 566666543
No 188
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.91 E-value=34 Score=36.95 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTA 120 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~ 120 (926)
.+++||+..|-=+.++. ||+||+--++.
T Consensus 82 q~kpFyLYTGRGpSS~s-mHlGHliPFif 109 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSES-MHLGHLIPFIF 109 (397)
T ss_pred cCCceEEEeCCCCCccc-cccccchhHHH
Confidence 45779998876556675 99999887654
No 189
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=31.62 E-value=50 Score=35.30 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=29.3
Q ss_pred cccccccCCC------cc----Ccc-----hhhh-hcCchhhhHHhhhcCCcCCCCcCCchhhHH
Q 002411 681 AHKMSKSRGN------VV----NPD-----DVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEG 729 (926)
Q Consensus 681 G~KMSKSkGN------vv----~p~-----eii~-~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~ 729 (926)
|+||||.++- .+ ||. .+.+ .|-+++++-|++..+-...+..++.+.+..
T Consensus 164 ~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 164 GGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 8999999852 11 222 2222 477888888887776554544455444443
No 190
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=30.91 E-value=44 Score=39.88 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=27.8
Q ss_pred cccccccCCCc---------------cCcchhhh-hcCchhhhHHhhhcCCc
Q 002411 681 AHKMSKSRGNV---------------VNPDDVVT-EYGADSLRLYEMFMGPF 716 (926)
Q Consensus 681 G~KMSKSkGNv---------------v~p~eii~-~yGaD~lRl~ll~~~~~ 716 (926)
|.||||+++.. .+...+.+ .|-++|+|=|++..|..
T Consensus 239 ~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s 290 (522)
T TIGR00440 239 GTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVT 290 (522)
T ss_pred CCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 89999999864 24455554 48999999999987754
No 191
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=29.72 E-value=61 Score=34.64 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=31.1
Q ss_pred cccccccCCC------cc----Ccch----hhh--hcCchhhhHHhhhcCCcCCCCcCCchhhHH
Q 002411 681 AHKMSKSRGN------VV----NPDD----VVT--EYGADSLRLYEMFMGPFRDSKTWNTSGIEG 729 (926)
Q Consensus 681 G~KMSKSkGN------vv----~p~e----ii~--~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~ 729 (926)
|+||||+.+- .+ +|.. .+. .|-+++++=|++..|....+..++.+.+..
T Consensus 162 g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~ 226 (238)
T cd00807 162 YTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEA 226 (238)
T ss_pred CCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHH
Confidence 9999999952 12 1211 122 477889998888777655555566555543
No 192
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=29.50 E-value=51 Score=39.22 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=32.5
Q ss_pred EeecceeEeccCCccccccccccccccCCCccCcchhhh-hcCchhhhHHhhhcC
Q 002411 661 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 714 (926)
Q Consensus 661 ~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~ 714 (926)
+.| +.+|++.+ |.||||..|.. ...++.+ .|-+.+++=|++..|
T Consensus 227 ~~H-~plv~~~~--------g~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG 271 (513)
T PRK14895 227 MTH-IPLIHGAD--------GAKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLG 271 (513)
T ss_pred EEE-EEeEEcCC--------CCccccccCch-hHHHHHHCCCCHHHHHHHHHHhC
Confidence 445 57887665 99999999875 4455544 488999998888554
No 193
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=29.31 E-value=66 Score=36.94 Aligned_cols=15 Identities=47% Similarity=0.601 Sum_probs=12.9
Q ss_pred cccccccCCCccCcc
Q 002411 681 AHKMSKSRGNVVNPD 695 (926)
Q Consensus 681 G~KMSKSkGNvv~p~ 695 (926)
|+|||||.||.|+.+
T Consensus 219 g~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 219 GEKMGKSGGGAVSLD 233 (377)
T ss_pred CCCccCCCCCcccCC
Confidence 899999999987654
No 194
>PLN02627 glutamyl-tRNA synthetase
Probab=28.54 E-value=55 Score=39.13 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=34.6
Q ss_pred EEeecceeEeccCCccccccccccccccCCCccCcchhhh-hcCchhhhHHhhhcC
Q 002411 660 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 714 (926)
Q Consensus 660 v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~ 714 (926)
.+.| ..++++.+ |+||||..|. ++..++.+ .|-+++++=|++..+
T Consensus 279 ~f~H-lpli~~~~--------g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LG 324 (535)
T PLN02627 279 RFAH-VSLILAPD--------RSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLG 324 (535)
T ss_pred eEEE-ccceeCCC--------CCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 3555 68888886 9999999865 46666655 488999999988766
No 195
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=27.87 E-value=48 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=14.2
Q ss_pred ceeEeccCCccccccccccccccCC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRG 689 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkG 689 (926)
.|+|+.++ |.||||.+|
T Consensus 196 ~~~v~~~~--------~~kmS~R~G 212 (212)
T cd00671 196 YGMVNLPK--------EGKMSTRAG 212 (212)
T ss_pred EEeEEcCC--------CCCCCCCCC
Confidence 58888775 889999887
No 196
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=26.92 E-value=58 Score=39.08 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=37.2
Q ss_pred cccccccCCC------cc---------Ccchhhh-hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH
Q 002411 681 AHKMSKSRGN------VV---------NPDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 732 (926)
Q Consensus 681 G~KMSKSkGN------vv---------~p~eii~-~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r 732 (926)
|.||||+++. .| +...+.+ .|-++|+|=|++..|....+...+.+.+..+.|
T Consensus 268 ~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~nR 335 (554)
T PRK05347 268 YTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESCIR 335 (554)
T ss_pred CCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHHHH
Confidence 8999999965 12 3444544 499999999999888665555566666666554
No 197
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=26.87 E-value=44 Score=32.87 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=44.4
Q ss_pred ccCccccCC-hhHHHHHHHHHHHH---hhCCcEEEeccCccccCCCCcccCchhhcc-------CccccCCCCeEE
Q 002411 183 WNREISTIE-PAYYKWTQWIFLQL---LKRGLAYQAEVPVNWCPALGTVLANEEVVD-------GVSERGGHPVIR 247 (926)
Q Consensus 183 w~~~~~T~d-~~y~~~v~~~f~~L---~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~-------~~~~~~~~~~~~ 247 (926)
|-..|+..+ ......+.+-..++ .++-+-+......+.||.|+...+..|... -.|+.||.+++.
T Consensus 60 ~~~~yw~i~y~~~~~vik~r~~~~~~~L~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 60 WYRYYWYINYDTLLDVVKYKLDKMRKRLEDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred EEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 555666666 34445555555555 356677777888999999999887766642 358899987654
No 198
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=26.45 E-value=1.2e+02 Score=33.25 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=15.0
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+-+|+.++|.||. -|+..+|-
T Consensus 148 l~~~~~~~G~DQ~-~~~~l~rd 168 (292)
T PF00579_consen 148 LKADLVPGGIDQR-GHIELARD 168 (292)
T ss_dssp TTHSEEEEEGGGH-HHHHHHHH
T ss_pred eccccccccchHH-HHHHHHHH
Confidence 4678999999996 45444553
No 199
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=26.41 E-value=56 Score=38.55 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=27.0
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhh-hhcCchhhhHHhhh
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVV-TEYGADSLRLYEMF 712 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii-~~yGaD~lRl~ll~ 712 (926)
.+.++..+ |+|||||+| .++..+.. ..|-..+|+-+++.
T Consensus 240 ~~li~~~~--------g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~al 279 (472)
T COG0008 240 LPLLLNED--------GKKLSKRKG-AVSIGEYRVEGWLPPALPNLLAL 279 (472)
T ss_pred eeeeecCC--------CCeecCccC-ccccchhhhcCCCcHHHHHHHHH
Confidence 67888765 899999999 55555433 45666666666543
No 200
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=26.30 E-value=59 Score=25.76 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHHHh-cccHHHHHHHHHHHHHHHhcc
Q 002411 777 VTEEIE-GTRFNTGISAMMEFINAAYKW 803 (926)
Q Consensus 777 v~~~~e-~~~f~~ai~~l~~f~~~~~~~ 803 (926)
+.++|+ +++++.|+..+++++...|++
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~ 29 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRL 29 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHH
Confidence 567774 699999999999999988864
No 201
>PLN02486 aminoacyl-tRNA ligase
Probab=25.66 E-value=30 Score=39.69 Aligned_cols=26 Identities=23% Similarity=0.115 Sum_probs=18.4
Q ss_pred ccccccCCC-ccCcchhhhhcCchhhhHHhhh
Q 002411 682 HKMSKSRGN-VVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 682 ~KMSKSkGN-vv~p~eii~~yGaD~lRl~ll~ 712 (926)
.|||||.+| .|...+ .++.++=-+..
T Consensus 264 ~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 264 GKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred CcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 699999988 587766 55555555543
No 202
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=23.92 E-value=50 Score=39.69 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=38.3
Q ss_pred ccccccccCCCc---------------cCcchhhh-hcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH
Q 002411 680 RAHKMSKSRGNV---------------VNPDDVVT-EYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 732 (926)
Q Consensus 680 ~G~KMSKSkGNv---------------v~p~eii~-~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r 732 (926)
.|.||||++... .+...+.. .|-++|+|=|++..|.-..+...+.+.+..+.|
T Consensus 283 ~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~nR 351 (574)
T PTZ00437 283 TGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLR 351 (574)
T ss_pred CCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHHH
Confidence 389999999874 23333333 489999999999888766666667677776654
No 203
>PHA02096 hypothetical protein
Probab=21.65 E-value=60 Score=27.97 Aligned_cols=52 Identities=29% Similarity=0.554 Sum_probs=33.2
Q ss_pred EeceeEeEEE-cc-CCCCHHHHHHHHhcCHhHHhhhCCCC-eeEEEEeCCcEEEE
Q 002411 863 INGKTRGTIQ-VE-EGCSEEEAFKLASLDEKLSKFLDGKS-IKKRIYVPGRILNV 914 (926)
Q Consensus 863 vngk~r~~i~-v~-~~~s~e~~~~la~~~~~~~k~l~~k~-i~kvi~v~~kivN~ 914 (926)
|.|.+-+.-. +. -++=+|+...+..+.+++.+||.|.+ |+|..|=|..||.|
T Consensus 18 v~gnl~g~~~gv~fh~swe~a~~~~~~ak~~i~eylkgt~vikkrlfg~ptiv~i 72 (103)
T PHA02096 18 VSGNLHGAFGGVMFHDSWEEADVSLKNAKKSIEEYLKGTTVIKKRLFGPPTIVSV 72 (103)
T ss_pred ecCcccccccceEEeccHHHhhhHHHHHHHHHHHHhcccchhhhhhcCCCeEEEe
Confidence 4455544433 11 23334455555556678999999865 77888889888876
No 204
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.89 E-value=59 Score=30.46 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=30.1
Q ss_pred cCCCCcccCchhhccCccccCCCCeEEeeccccchhhhh
Q 002411 221 CPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITE 259 (926)
Q Consensus 221 c~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~ 259 (926)
||.|+..|.-.++ .|..|+..++=.-...||..|++
T Consensus 1 CPvCg~~l~vt~l---~C~~C~t~i~G~F~l~~~~~L~~ 36 (113)
T PF09862_consen 1 CPVCGGELVVTRL---KCPSCGTEIEGEFELPWFARLSP 36 (113)
T ss_pred CCCCCCceEEEEE---EcCCCCCEEEeeeccchhhcCCH
Confidence 8999988877777 48888888888888889998875
No 205
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=20.42 E-value=1.1e+02 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=30.5
Q ss_pred ecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhH
Q 002411 552 QTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (926)
Q Consensus 552 ~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HL 617 (926)
+..||+||.+++++-.. .+|-.|+.=..++- --.||-..|-+|+..|.
T Consensus 939 dK~CPkCg~pl~kDG~d--------IPFETFlGF~GDKV----------PDIDLNFSGeYQ~~AH~ 986 (1444)
T COG2176 939 DKDCPKCGTPLKKDGHD--------IPFETFLGFKGDKV----------PDIDLNFSGEYQPKAHN 986 (1444)
T ss_pred CCCCCcCCCccccCCCC--------CChhhhcCCCCCCC----------CCccCcCCccccHHHHH
Confidence 46799999998775332 23444433111111 13789999999999994
Done!