Query 002411
Match_columns 926
No_of_seqs 389 out of 3065
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 01:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 4E-183 2E-187 1664.3 67.7 815 60-917 21-880 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 100.0 3E-176 1E-180 1618.8 57.1 820 63-917 3-877 (878)
3 1gax_A Valrs, valyl-tRNA synth 100.0 4E-127 1E-131 1176.0 47.2 611 60-848 3-709 (862)
4 1ffy_A Isoleucyl-tRNA syntheta 100.0 2E-129 7E-134 1206.4 23.9 671 56-849 10-789 (917)
5 1ile_A Ilers, isoleucyl-tRNA s 100.0 4E-127 1E-131 1184.3 35.2 670 62-853 6-795 (821)
6 1wz2_A Leucyl-tRNA synthetase; 100.0 6E-116 2E-120 1097.0 36.6 669 62-853 2-829 (967)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 2E-109 8E-114 1027.0 39.7 650 62-834 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 1.7E-77 5.8E-82 713.3 32.5 463 91-847 6-515 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 1.6E-76 5.6E-81 719.7 33.7 462 94-847 2-530 (722)
10 2x1l_A Methionyl-tRNA syntheta 100.0 2.7E-73 9.3E-78 673.8 30.5 444 91-836 9-492 (524)
11 2d5b_A Methionyl-tRNA syntheta 100.0 2.1E-72 7.1E-77 663.1 29.0 436 93-836 2-470 (500)
12 2csx_A Methionyl-tRNA syntheta 100.0 2.1E-72 7E-77 662.0 26.8 432 93-836 4-469 (497)
13 4dlp_A Aminoacyl-tRNA syntheta 100.0 5.2E-71 1.8E-75 654.8 34.1 442 92-836 23-499 (536)
14 3kfl_A Methionyl-tRNA syntheta 100.0 2.4E-71 8.3E-76 659.4 28.3 457 80-836 14-516 (564)
15 3h99_A Methionyl-tRNA syntheta 100.0 4.4E-71 1.5E-75 658.7 29.3 455 90-849 14-530 (560)
16 3c8z_A Cysteinyl-tRNA syntheta 100.0 1.2E-43 4.3E-48 405.8 20.1 118 92-216 38-156 (414)
17 3tqo_A Cysteinyl-tRNA syntheta 100.0 4.9E-43 1.7E-47 399.9 16.2 129 91-225 23-152 (462)
18 3sp1_A Cysteinyl-tRNA syntheta 100.0 6.8E-43 2.3E-47 399.9 15.6 126 93-224 42-177 (501)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 3.2E-39 1.1E-43 372.9 19.9 127 91-224 20-148 (461)
20 3o0a_A Leucyl-tRNA synthetase 100.0 4.3E-38 1.5E-42 326.1 16.6 197 286-490 1-219 (219)
21 2ajg_A Leucyl-tRNA synthetase; 100.0 4.7E-36 1.6E-40 307.3 16.3 185 288-485 10-195 (196)
22 1wny_A Isoleucyl-tRNA syntheta 100.0 1.1E-33 3.9E-38 287.2 10.9 178 287-488 2-183 (186)
23 1wka_A Valyl-tRNA synthetase; 100.0 3.5E-31 1.2E-35 257.9 14.6 143 288-488 4-146 (147)
24 2wfd_A Leucyl-tRNA synthetase, 100.0 4.9E-30 1.7E-34 272.2 9.4 183 292-483 9-248 (252)
25 2wfg_A Cytosolic leucyl-tRNA s 100.0 1.6E-29 5.4E-34 269.1 8.1 174 306-488 32-252 (261)
26 3pz6_A Leurs, leucyl-tRNA synt 99.9 6.2E-28 2.1E-32 254.9 8.6 171 306-483 79-302 (311)
27 1irx_A Lysyl-tRNA synthetase; 99.9 7.4E-25 2.5E-29 258.0 -0.0 114 95-213 20-152 (523)
28 1iq0_A Arginyl-tRNA synthetase 99.9 1.7E-22 5.8E-27 240.7 13.7 115 95-213 104-264 (592)
29 3fnr_A Arginyl-tRNA synthetase 99.9 2.1E-20 7.2E-25 214.7 26.8 132 665-805 272-415 (464)
30 2zue_A Arginyl-tRNA synthetase 99.9 6.4E-21 2.2E-25 227.7 22.1 118 93-213 118-294 (629)
31 1f7u_A Arginyl-tRNA synthetase 99.6 5.4E-14 1.9E-18 166.8 20.9 117 93-214 142-318 (607)
32 1nzj_A Hypothetical protein YA 98.0 6.3E-06 2.1E-10 89.2 6.2 91 101-214 10-101 (298)
33 3aii_A Glutamyl-tRNA synthetas 97.9 6.3E-06 2.1E-10 95.3 6.2 94 97-213 97-190 (553)
34 1qtq_A GLNRS, protein (glutami 97.9 1.2E-05 4.1E-10 93.0 7.8 94 98-213 28-121 (553)
35 2o5r_A Glutamyl-tRNA synthetas 97.7 4.1E-05 1.4E-09 88.3 7.9 95 96-213 13-116 (481)
36 2hz7_A Glutaminyl-tRNA synthet 97.7 4.4E-05 1.5E-09 92.2 7.1 95 97-213 67-161 (851)
37 2cfo_A Glutamyl-tRNA synthetas 97.6 4.1E-05 1.4E-09 88.4 6.4 89 102-213 7-96 (492)
38 3al0_C Glutamyl-tRNA(Gln) amid 97.6 5.9E-05 2E-09 88.9 7.7 93 99-214 132-233 (592)
39 4g6z_A Glutamate-tRNA ligase; 97.5 0.00012 4.1E-09 83.9 6.8 91 101-214 30-121 (490)
40 3afh_A Glutamyl-tRNA synthetas 97.2 0.00023 7.9E-09 82.0 6.0 94 98-214 27-129 (488)
41 1j09_A Glutamyl-tRNA synthetas 97.1 0.00034 1.1E-08 80.3 5.4 92 102-214 7-105 (468)
42 4gri_A Glutamate--tRNA ligase; 97.0 0.00075 2.6E-08 78.5 7.1 92 102-214 30-128 (512)
43 2ja2_A Glutamyl-tRNA synthetas 96.9 0.0012 4.2E-08 76.0 7.9 90 102-214 12-110 (498)
44 3aii_A Glutamyl-tRNA synthetas 96.5 0.0011 3.8E-08 76.6 3.9 61 663-733 319-395 (553)
45 2cyb_A Tyrosyl-tRNA synthetase 96.4 0.0035 1.2E-07 68.7 6.6 71 601-713 169-239 (323)
46 2cfo_A Glutamyl-tRNA synthetas 95.6 0.011 3.6E-07 68.3 6.0 46 660-715 233-279 (492)
47 1qtq_A GLNRS, protein (glutami 94.9 0.017 5.9E-07 66.8 4.7 53 681-733 265-333 (553)
48 2yxn_A Tyrosyl-tRNA synthetase 93.5 0.04 1.4E-06 60.1 3.8 30 681-712 233-262 (322)
49 1y42_X Tyrosyl-tRNA synthetase 93.5 0.038 1.3E-06 61.8 3.6 30 681-712 291-320 (392)
50 2jan_A Tyrosyl-tRNA synthetase 92.9 0.061 2.1E-06 60.7 4.2 30 681-712 229-259 (432)
51 3tzl_A Tryptophanyl-tRNA synth 92.8 0.11 3.7E-06 56.6 5.8 61 105-179 12-72 (322)
52 1jil_A Tyrrs, tyrosyl-tRNA syn 92.8 0.066 2.3E-06 60.4 4.2 30 681-712 229-258 (420)
53 2hz7_A Glutaminyl-tRNA synthet 92.6 0.071 2.4E-06 64.6 4.5 52 681-732 305-372 (851)
54 2ts1_A Tyrosyl-tRNA synthetase 92.6 0.063 2.1E-06 60.5 3.8 30 681-712 228-257 (419)
55 2pid_A Tyrosyl-tRNA synthetase 92.3 0.058 2E-06 59.6 2.9 30 681-712 252-281 (356)
56 2g36_A Tryptophanyl-tRNA synth 92.0 0.12 4.2E-06 56.6 5.1 64 105-180 21-84 (340)
57 1ile_A Ilers, isoleucyl-tRNA s 91.8 0.057 1.9E-06 66.7 2.3 76 196-285 361-438 (821)
58 1h3f_A Tyrosyl-tRNA synthetase 91.8 0.13 4.3E-06 58.3 4.9 71 601-713 186-257 (432)
59 2o5r_A Glutamyl-tRNA synthetas 91.4 0.19 6.6E-06 57.7 6.0 44 661-714 249-293 (481)
60 2zp1_A Tyrosyl-tRNA synthetase 91.1 0.11 3.8E-06 56.3 3.5 71 95-179 28-98 (314)
61 1gax_A Valrs, valyl-tRNA synth 90.7 0.18 6.2E-06 62.2 5.3 77 196-286 316-395 (862)
62 1n3l_A Tyrosyl-tRNA synthetase 90.3 0.17 5.8E-06 56.3 4.2 70 601-712 177-247 (372)
63 1j09_A Glutamyl-tRNA synthetas 89.7 0.29 9.8E-06 56.0 5.4 45 661-715 230-275 (468)
64 2el7_A Tryptophanyl-tRNA synth 89.4 0.21 7.3E-06 54.6 3.9 65 105-180 10-75 (337)
65 3afh_A Glutamyl-tRNA synthetas 88.0 0.54 1.8E-05 54.0 6.2 46 660-715 241-287 (488)
66 3vgj_A Tyrosyl-tRNA synthetase 87.5 0.41 1.4E-05 53.1 4.7 72 97-180 58-130 (373)
67 1yi8_B Tryptophanyl-tRNA synth 87.4 0.31 1.1E-05 53.7 3.6 71 95-179 22-92 (351)
68 1wkb_A Leucyl-tRNA synthetase; 87.3 0.12 4.3E-06 63.6 0.4 52 235-286 446-501 (810)
69 1ffy_A Isoleucyl-tRNA syntheta 87.0 0.23 7.7E-06 61.8 2.4 52 235-286 394-446 (917)
70 2dlc_X Tyrosyl-tRNA synthetase 86.9 0.38 1.3E-05 53.8 4.0 41 94-140 38-78 (394)
71 2ja2_A Glutamyl-tRNA synthetas 85.7 1 3.5E-05 51.7 6.8 42 665-715 247-289 (498)
72 3al0_C Glutamyl-tRNA(Gln) amid 85.3 0.5 1.7E-05 55.6 4.1 42 665-715 349-391 (592)
73 3tzl_A Tryptophanyl-tRNA synth 84.4 0.76 2.6E-05 49.9 4.7 27 681-712 190-216 (322)
74 3hv0_A Tryptophanyl-tRNA synth 84.4 2.3 7.9E-05 47.3 8.7 79 93-182 72-150 (393)
75 1i6k_A TRPRS, tryptophanyl-tRN 84.0 0.62 2.1E-05 50.7 3.9 62 105-180 10-71 (328)
76 2ip1_A Tryptophanyl-tRNA synth 83.9 0.37 1.3E-05 54.5 2.0 21 601-622 248-268 (432)
77 3jxe_A Tryptophanyl-tRNA synth 83.7 0.69 2.4E-05 51.5 4.1 20 603-623 208-227 (392)
78 3i05_A Tryptophanyl-tRNA synth 82.7 0.56 1.9E-05 52.3 2.8 78 93-182 76-153 (395)
79 3hzr_A Tryptophanyl-tRNA synth 82.5 2.7 9.1E-05 46.7 8.2 77 93-182 80-156 (386)
80 2yy5_A Tryptophanyl-tRNA synth 82.2 0.77 2.6E-05 50.4 3.7 64 105-182 13-76 (348)
81 3jxe_A Tryptophanyl-tRNA synth 81.4 2.7 9.1E-05 46.8 7.7 77 94-182 72-148 (392)
82 1r6u_A Tryptophanyl-tRNA synth 81.4 0.84 2.9E-05 51.5 3.7 16 681-696 298-316 (437)
83 2cya_A Tyrosyl-tRNA synthetase 80.3 1.1 3.9E-05 49.4 4.3 74 96-181 36-109 (364)
84 2cya_A Tyrosyl-tRNA synthetase 79.5 0.85 2.9E-05 50.4 2.9 27 681-712 236-263 (364)
85 1r6t_A Tryptophanyl-tRNA synth 79.4 1.1 3.6E-05 51.4 3.7 16 681-696 345-363 (477)
86 2cyb_A Tyrosyl-tRNA synthetase 79.2 2.8 9.7E-05 45.4 6.9 75 96-186 33-107 (323)
87 3hv0_A Tryptophanyl-tRNA synth 78.9 1.1 3.8E-05 49.9 3.6 15 682-696 265-280 (393)
88 3tze_A Tryptophanyl-tRNA synth 78.5 1.2 3.9E-05 49.9 3.6 77 93-182 99-176 (406)
89 2g36_A Tryptophanyl-tRNA synth 78.5 2.5 8.7E-05 46.1 6.3 28 681-713 203-230 (340)
90 3a04_A Tryptophanyl-tRNA synth 78.4 2.2 7.6E-05 47.2 5.8 77 93-182 68-144 (372)
91 2cyc_A Tyrosyl-tRNA synthetase 78.3 1.3 4.4E-05 49.1 3.9 26 682-712 250-276 (375)
92 2dlc_X Tyrosyl-tRNA synthetase 78.2 3.3 0.00011 46.2 7.2 27 681-712 225-252 (394)
93 1wz2_A Leucyl-tRNA synthetase; 77.9 0.66 2.2E-05 58.2 1.5 51 235-285 446-500 (967)
94 3hzr_A Tryptophanyl-tRNA synth 77.9 1.2 4E-05 49.6 3.3 27 681-712 266-294 (386)
95 3p0j_A Tyrosyl-tRNA synthetase 77.2 1.5 5.2E-05 52.4 4.3 73 96-180 41-114 (690)
96 2j5b_A Tyrosyl-tRNA synthetase 76.8 1.5 5.2E-05 48.0 3.9 77 95-182 40-116 (348)
97 3foc_A Tryptophanyl-tRNA synth 76.3 5.2 0.00018 45.1 8.1 111 60-182 39-167 (451)
98 2ip1_A Tryptophanyl-tRNA synth 75.7 2.1 7.1E-05 48.3 4.7 78 94-182 101-178 (432)
99 1r6t_A Tryptophanyl-tRNA synth 74.8 2.9 0.0001 47.8 5.6 78 93-182 153-230 (477)
100 2zp1_A Tyrosyl-tRNA synthetase 73.6 4.7 0.00016 43.4 6.7 27 681-712 201-228 (314)
101 3i05_A Tryptophanyl-tRNA synth 72.1 6.2 0.00021 43.9 7.3 15 131-145 75-89 (395)
102 3foc_A Tryptophanyl-tRNA synth 71.2 2.1 7.1E-05 48.4 3.2 18 605-623 290-307 (451)
103 3prh_A Tryptophanyl-tRNA synth 70.5 2.3 7.8E-05 47.2 3.3 70 98-182 38-107 (388)
104 3sz3_A Tryptophanyl-tRNA synth 69.8 1.8 6.1E-05 47.3 2.3 64 105-182 15-78 (341)
105 1r6u_A Tryptophanyl-tRNA synth 69.7 4.3 0.00015 45.8 5.3 78 93-182 106-183 (437)
106 3n9i_A Tryptophanyl-tRNA synth 68.8 2.7 9.1E-05 46.0 3.3 22 601-623 151-172 (346)
107 1i6k_A TRPRS, tryptophanyl-tRN 67.5 3.8 0.00013 44.5 4.3 21 601-622 136-156 (328)
108 2yy5_A Tryptophanyl-tRNA synth 67.2 3.3 0.00011 45.3 3.7 21 601-622 146-166 (348)
109 3prh_A Tryptophanyl-tRNA synth 66.9 3.5 0.00012 45.7 3.8 16 681-696 224-242 (388)
110 3tze_A Tryptophanyl-tRNA synth 65.5 8.3 0.00029 43.0 6.6 15 131-145 98-112 (406)
111 2el7_A Tryptophanyl-tRNA synth 64.7 8.5 0.00029 41.8 6.4 28 681-713 192-220 (337)
112 3vgj_A Tyrosyl-tRNA synthetase 63.1 4.2 0.00014 44.9 3.6 22 601-623 199-220 (373)
113 1y42_X Tyrosyl-tRNA synthetase 61.3 3.6 0.00012 45.7 2.7 75 97-178 66-143 (392)
114 1nzj_A Hypothetical protein YA 61.2 2 6.8E-05 46.1 0.5 21 662-691 216-236 (298)
115 4g6z_A Glutamate-tRNA ligase; 58.6 9 0.00031 43.8 5.3 44 661-714 251-295 (490)
116 2j5b_A Tyrosyl-tRNA synthetase 57.8 12 0.0004 40.9 5.9 19 602-621 186-204 (348)
117 3p0j_A Tyrosyl-tRNA synthetase 56.8 9.8 0.00033 45.5 5.4 19 601-619 519-537 (690)
118 1n3l_A Tyrosyl-tRNA synthetase 55.6 5.5 0.00019 44.0 2.8 38 97-140 37-74 (372)
119 1yi8_B Tryptophanyl-tRNA synth 51.2 10 0.00035 41.4 4.1 27 681-712 212-239 (351)
120 2cyc_A Tyrosyl-tRNA synthetase 50.0 14 0.00049 40.7 5.1 74 98-182 36-114 (375)
121 3a04_A Tryptophanyl-tRNA synth 47.4 7.8 0.00027 42.8 2.4 19 604-623 210-228 (372)
122 3sz3_A Tryptophanyl-tRNA synth 46.3 14 0.00049 40.1 4.2 21 601-622 142-162 (341)
123 3n9i_A Tryptophanyl-tRNA synth 43.0 9.4 0.00032 41.6 2.1 65 104-182 23-87 (346)
124 2ts1_A Tyrosyl-tRNA synthetase 37.9 14 0.00048 41.4 2.5 67 105-177 39-108 (419)
125 1jil_A Tyrrs, tyrosyl-tRNA syn 35.3 14 0.00048 41.4 2.1 74 97-177 34-110 (420)
126 2yxn_A Tyrosyl-tRNA synthetase 35.0 15 0.0005 39.7 2.1 75 97-177 35-111 (322)
127 2jan_A Tyrosyl-tRNA synthetase 31.7 20 0.00069 40.2 2.5 68 105-177 41-109 (432)
128 1h3f_A Tyrosyl-tRNA synthetase 29.4 24 0.00083 39.6 2.7 77 96-179 38-116 (432)
129 4gri_A Glutamate--tRNA ligase; 28.2 74 0.0025 36.5 6.5 45 660-714 259-304 (512)
130 4ayb_P DNA-directed RNA polyme 28.0 36 0.0012 25.4 2.4 30 218-247 3-35 (48)
131 8tfv_A Protein (thanatin); bac 20.9 31 0.0011 20.4 0.7 10 503-512 4-13 (21)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=4.4e-183 Score=1664.31 Aligned_cols=815 Identities=42% Similarity=0.756 Sum_probs=691.2
Q ss_pred cccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc
Q 002411 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (926)
+.+.|||.+||++||++|+++++|++.. +.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++
T Consensus 21 m~~~y~~~~iE~kw~~~W~~~~~f~~~~--~~~~~~~~v~~~~PypnG~-lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 21 MQEQYRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGR-LHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTTTCCCC--CTTSCEEEEEECCCCCCSS-CCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred ccccCChHHHHHHHHHHHHhcCCcccCC--cCCCCCEEEEcCCCCCCCC-cchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 5678999999999999999999999763 4578999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCcc
Q 002411 140 GWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVN 219 (926)
Q Consensus 140 G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~ 219 (926)
||||||+|||++|++.|.+|++++.++++.|+++|++||+++||+++++|+|+.|+++++|+|.+|+++|+||++.++|+
T Consensus 98 G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~ 177 (880)
T 4arc_A 98 GWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVN 177 (880)
T ss_dssp EECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-
T ss_pred CccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-CcHHHHHHHHhhhccCCCceEEEEee
Q 002411 220 WCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIGRSEGAEMDFRVL 298 (926)
Q Consensus 220 wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~~s~~~~v~f~~~ 298 (926)
|||.|+|+||++||++|+|++||.+|++++++||||+|++|+++|+++++.++ ||++++.||+||||+|+|++|+|++.
T Consensus 178 wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~ 257 (880)
T 4arc_A 178 WCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVN 257 (880)
T ss_dssp -----------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEET
T ss_pred ecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEec
Confidence 99999999999999999999999999999999999999999999999999884 99999999999999999999999995
Q ss_pred cCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEe
Q 002411 299 DSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (926)
Q Consensus 299 ~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (926)
+. +.+|.|||||||||+|++||||||+|+|+..++..+ ..+++|++.+...+..++.....++.|.++|.+++
T Consensus 258 ~~-----~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 330 (880)
T 4arc_A 258 DY-----DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENN--PELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAV 330 (880)
T ss_dssp TC-----SSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGC--HHHHHHHTC----------------CEEEEEEEEE
T ss_pred CC-----CceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcCh--HHHHHHHHHHhccCchhhhhccceeeccccCcEEe
Confidence 31 368999999999999999999999999998876432 34566766555444444443445678899999999
Q ss_pred cCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCC-cccccccccCceEeccCCcccc
Q 002411 379 NPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESS-SQSEKAYTGEGLIVNSSNLISG 457 (926)
Q Consensus 379 ~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~-~~~~~~y~~~g~~~~~~~~~~~ 457 (926)
||++|+++||+.+|||++++|||+||+|||||++||++|++||||+++||++.++.. ....++|+++|++++++
T Consensus 331 ~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~----- 405 (880)
T 4arc_A 331 HPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSG----- 405 (880)
T ss_dssp CTTTCCEEEEEEETTSCSSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSG-----
T ss_pred cCCCCCEeEEEEeCccccCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCc-----
Confidence 999999999999999999999999999999999999999999999999998754321 12356899999998865
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCC
Q 002411 458 LDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPT 537 (926)
Q Consensus 458 ~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~ 537 (926)
.|+||.+.+|+++|+++|++.|.+.+.++|+|||||||||||||+|||+|||++|| .+++++++||+.||+. +.+.
T Consensus 406 -~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg-~v~v~~~~Lpv~lp~~--~~~~ 481 (880)
T 4arc_A 406 -EFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGT-VMPTPDDQLPVILPED--VVMD 481 (880)
T ss_dssp -GGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSC-EEECCGGGCSCCCCSS--CCCC
T ss_pred -ccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCC-eEeCChHHCccccchh--cccC
Confidence 49999999999999999999999999999999999999999999999999998876 6778999999999973 4455
Q ss_pred CCCCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhH
Q 002411 538 GTGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (926)
Q Consensus 538 g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HL 617 (926)
|.| +||....+|+++.|| |++++||||||||||||||||+||++|++++.++++...+||||+|+|+||+||+++||
T Consensus 482 ~~g-~pl~~~~~w~~~~cp--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHl 558 (880)
T 4arc_A 482 GIT-SPIKADPEWAKTTVN--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHL 558 (880)
T ss_dssp SSS-CHHHHSTTTTEEESS--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHH
T ss_pred CCC-CchHhCccceeeccC--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHH
Confidence 666 799999999999999 88999999999999999999999999999888898888899999999999999999999
Q ss_pred HHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEe-------ccCCc--------cc------
Q 002411 618 LYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVM-------KDNPN--------IR------ 676 (926)
Q Consensus 618 ly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl-------~~~~~--------~~------ 676 (926)
||+||||+++++.. ...+..||+++++ ||||+ +++|. |.
T Consensus 559 lyaRf~~~~L~~~g------------------~~~~~ePFk~ll~--qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~ 618 (880)
T 4arc_A 559 LYFRFFHKLMRDAG------------------MVNSDEPAKQLLC--QGMVLADAFYYVGENGERNWVSPVDAIVERDEK 618 (880)
T ss_dssp HHHHHHHHHHHHTT------------------SCCCSCSEEEEEC--CCCEEEEEEEEECTTSCEEEECSTTCEEEECTT
T ss_pred HHHHHHHHHHHHhh------------------cccCCCChHHeEE--eceEeecceeccccCCcccccCHHHhccccccc
Confidence 99999998865431 1245789999998 89997 43311 00
Q ss_pred ------ccccc--------ccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHHh
Q 002411 677 ------LIARA--------HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLIV 742 (926)
Q Consensus 677 ------~~~~G--------~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~~ 742 (926)
+..+| +|||||+||+|+|.++|++||||++|||+|++++++++++|+++++++++|||+|+|+++.
T Consensus 619 ~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~ 698 (880)
T 4arc_A 619 GRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVY 698 (880)
T ss_dssp CCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 00001 2999999999999999999999999999999999999999999999999999999999874
Q ss_pred cCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcccc-------chHHHHHHH
Q 002411 743 GSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIE-GTRFNTGISAMMEFINAAYKWEK-------HPRKIIEPF 814 (926)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e-~~~f~~ai~~l~~f~~~~~~~~~-------~~~~~l~~l 814 (926)
..... ..............|+++++++++++++|+++|+ +|+|++|++++|+|++.++++.. .++++++.+
T Consensus 699 ~~~~~-~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~~~~~~~~~l~~~l~~l 777 (880)
T 4arc_A 699 EHTAK-GDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRALMQEALLAV 777 (880)
T ss_dssp HHHHT-CCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHH
T ss_pred HHHhc-ccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 32100 0000000011234578899999999999999998 79999999999999999998732 356899999
Q ss_pred HHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccCCCCceEEeEEEeceeEeEEEccCCCCHHHHHHHHhcCHhHHh
Q 002411 815 ILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLASLDEKLSK 894 (926)
Q Consensus 815 ~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~la~~~~~~~k 894 (926)
++||+|||||+|||||+.|+.++||+.++||+++++++.+++++++||||||+|+++++++++++++++++|++++++++
T Consensus 778 l~LLaPf~PhiaEElW~~Lg~~~sv~~~~wP~~d~~~l~~~~~~~~vqvngk~r~~~~v~~~~~~~~~~~~~~~~~~~~~ 857 (880)
T 4arc_A 778 VRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVEDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAK 857 (880)
T ss_dssp HHHHTTTSHHHHHHHHHHTTCSSCGGGSCCCCCCHHHHCCSEEEEEEEETTEEEEEEEEETTCCHHHHHHHHHHCHHHHT
T ss_pred HHHHhhccHHHHHHHHHHcCCCCeEEeCCCCCCCHHHhccCceEEEEEEecceEEEEEcCCCCCHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCeeEEEEeCCcEEEEEec
Q 002411 895 FLDGKSIKKRIYVPGRILNVILD 917 (926)
Q Consensus 895 ~l~~k~i~kvi~v~~kivN~v~~ 917 (926)
+|+||+|+|+|+|||||||||++
T Consensus 858 ~~~~~~~~k~i~v~~k~vn~v~~ 880 (880)
T 4arc_A 858 YLDGVTVRKVIYVPGKLLNLVVG 880 (880)
T ss_dssp TTTTCCCCEEEEETTTEEEEECC
T ss_pred HhCCCCceEEEEECCCEEEEEeC
Confidence 99999999999999999999985
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=3e-176 Score=1618.84 Aligned_cols=820 Identities=46% Similarity=0.807 Sum_probs=674.0
Q ss_pred CCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccccc
Q 002411 63 AYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWD 142 (926)
Q Consensus 63 ~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D 142 (926)
.|||.++|++||++|+++++|+... .+.++++||+++|||||||. |||||+++++++|+++||+||+||+|++++|||
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~-lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D 80 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGD-LHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWD 80 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSC-CBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCC-cchhhhHHHHHHHHHHHHHHhcCCceEeecccC
Confidence 6999999999999999999999874 25578899999999999998 999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccC
Q 002411 143 AFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCP 222 (926)
Q Consensus 143 ~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~ 222 (926)
|||+|||++|.+.|.+|.+++.++++.|+++|++||+++||++++.|+++.|+++++|+|.+|+++|+||++.++|+|||
T Consensus 81 ~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p 160 (878)
T 2v0c_A 81 AFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCP 160 (878)
T ss_dssp CSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET
T ss_pred cccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCchhhccCcccc-CCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCC
Q 002411 223 ALGTVLANEEVVDGVSER-GGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSD 301 (926)
Q Consensus 223 ~~~t~ls~~ev~~~~~~~-~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~ 301 (926)
.|+|+||++||++|.|++ ||.++++++++||||+|++|+++|++++++++||++++.||+||||+|+|++|+|++.+
T Consensus 161 ~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~-- 238 (878)
T 2v0c_A 161 KCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEG-- 238 (878)
T ss_dssp TTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTT--
T ss_pred CCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecC--
Confidence 999999999999999999 99999999999999999999999999999989999999999999999999999999843
Q ss_pred CCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCC
Q 002411 302 GQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPA 381 (926)
Q Consensus 302 ~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~ 381 (926)
.+.+|+||||||||||||+||||||+|+|+..++..+....+++|++.+...+.+++......+.|.|+|+++.||+
T Consensus 239 ---~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~ 315 (878)
T 2v0c_A 239 ---KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPA 315 (878)
T ss_dssp ---SSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTT
T ss_pred ---CCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCC
Confidence 14789999999999999999999999999988876667777888988877777766643345677889999999999
Q ss_pred CCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCC-CcccccccccCceEeccCCccccccc
Q 002411 382 SGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDES-SSQSEKAYTGEGLIVNSSNLISGLDI 460 (926)
Q Consensus 382 ~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~-~~~~~~~y~~~g~~~~~~~~~~~~~~ 460 (926)
+++++||+.++||++++|||+||+|||||++||++|++||||++++|+++++. ..+..++|+++|++++++ .|
T Consensus 316 ~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~------~~ 389 (878)
T 2v0c_A 316 TGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSG------PF 389 (878)
T ss_dssp TCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEECSSG------GG
T ss_pred CCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEecCC------CC
Confidence 99999999999999999999999999999999999999999999999864311 011256888899998875 49
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccC-CCCC
Q 002411 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFT-PTGT 539 (926)
Q Consensus 461 ~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~-~~g~ 539 (926)
+|+.+.+|+++|+++|++.|.++++++|+|||||||||||||+|||+|||++|| .+++++++||+.||.+.++. +.|.
T Consensus 390 ~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~-~v~v~~~~lpv~lp~~~~~~~~~~~ 468 (878)
T 2v0c_A 390 DGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACG-VVPVPEEELPVLLPDLKDVEDIRPK 468 (878)
T ss_dssp TTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTE-EEECCGGGCCCCCCCCCCHHHHSCS
T ss_pred CCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCC-eEecCHHHccccccchhhhhccccC
Confidence 999999999999999999999999999999999999999999999999998865 66788999999999887765 6676
Q ss_pred CCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHH
Q 002411 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLY 619 (926)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly 619 (926)
|.+|+..+.+|+.+.||.||++++||+|||||||||||||++|++|++++.++++...+||+|+|+|+||+||+++||||
T Consensus 469 g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y 548 (878)
T 2v0c_A 469 GKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLY 548 (878)
T ss_dssp SSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHH
T ss_pred CCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCCCCeEEEechHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999988888887779999999999999999999999
Q ss_pred hhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEecc-----CC-c-------------------
Q 002411 620 ARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKD-----NP-N------------------- 674 (926)
Q Consensus 620 ~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~-----~~-~------------------- 674 (926)
+||||++++.+ + ...+..||++|++ ||||+++ ++ .
T Consensus 549 ~r~~~~~l~~~-----------------g-~~~~~~Pfk~l~~--~G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (878)
T 2v0c_A 549 SRFFTKFLHDL-----------------G-MVKVEEPFQGLFT--QGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPES 608 (878)
T ss_dssp HHHHHHHHHHT-----------------T-SCSCSCSBSBEEC--CCCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCS
T ss_pred HHHHHHHHHHh-----------------h-cccCCCchHhhee--cceEeccceeccccccccceeccccccccccccCc
Confidence 99999864432 1 1246789999998 8999984 00 0
Q ss_pred --c--------c---ccccc-------ccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHHH
Q 002411 675 --I--------R---LIARA-------HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRFL 734 (926)
Q Consensus 675 --~--------~---~~~~G-------~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L 734 (926)
+ . .+.+| +|||||+||+|+|.++|++||||++|||+|++++++++++|+++.++++.+|+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l 688 (878)
T 2v0c_A 609 ALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFL 688 (878)
T ss_dssp EEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHH
T ss_pred hhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHH
Confidence 0 0 00248 99999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHhcCCCC-CCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc------cch
Q 002411 735 GRMWRLIVGSSLP-DGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWE------KHP 807 (926)
Q Consensus 735 ~r~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~------~~~ 807 (926)
+|+|+++...... +..............|+++++++++++++|+++|++|+|++|++.+|+|++.+++|. ..+
T Consensus 689 ~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~~~~~~~l 768 (878)
T 2v0c_A 689 NRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVY 768 (878)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCSCHHH
T ss_pred HHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 9999987432100 000000000112345789999999999999999999999999999999999998873 256
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccCCCCceEEeEEEeceeEeEEEccCCCCHHHHHHHHh
Q 002411 808 RKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLKDSTIVLPIQINGKTRGTIQVEEGCSEEEAFKLAS 887 (926)
Q Consensus 808 ~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l~~~~~~~~vqvngk~r~~i~v~~~~s~e~~~~la~ 887 (926)
+++|+.+++||+|||||+|||||+.|+ ++||+.++||+++++++.++++++++|||||+|++++++.++++++++++|+
T Consensus 769 ~~~l~~l~~LLaPf~P~~aEElw~~Lg-~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~v~~~~~~~~~~~~~~ 847 (878)
T 2v0c_A 769 RTAIRYYLQMLFPFAPHLAEELWHWFW-PDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIHIPKDAPLEVARAEAL 847 (878)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHC-SSCGGGSCCCCCCGGGGC----------------------------------
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHcC-CCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHcccCcCCCHHHHHHHHh
Confidence 789999999999999999999999999 8899999999999998888999999999999999999999999999999999
Q ss_pred cCHhHHhhhCCCCeeEEEEeCCcEEEEEec
Q 002411 888 LDEKLSKFLDGKSIKKRIYVPGRILNVILD 917 (926)
Q Consensus 888 ~~~~~~k~l~~k~i~kvi~v~~kivN~v~~ 917 (926)
++++++++|+||+|+|+|+|||||||||++
T Consensus 848 ~~~~~~~~~~~~~~~k~i~v~~~~vn~v~~ 877 (878)
T 2v0c_A 848 KVRNVRAHLEGKEVVKEIYVPGKILNLVVR 877 (878)
T ss_dssp ------------------------------
T ss_pred cCHHHHHHhCCCCcEEEEEECCCEEEEEeC
Confidence 999999999999999999999999999985
No 3
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3.9e-127 Score=1175.97 Aligned_cols=611 Identities=26% Similarity=0.430 Sum_probs=514.1
Q ss_pred cccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccc
Q 002411 60 VKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPM 139 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~ 139 (926)
+++.|||.++|++||++|++ ++|+... +.++++|+|++|||||||. |||||+++++++|+++||+||+||+|+|++
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~--~~~~~~f~i~~ppPy~nG~-lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~ 78 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANP--KSGKPPFVIFMPPPNVTGS-LHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCT--TCCSCEEEEECCCCBSSSC-CCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCc--CCCCCcEEEEcCCCCCCCC-cchhhhHHHHHHHHHHHHHHhCCCcccccc
Confidence 66789999999999999999 9999863 4578999999999999998 999999999999999999999999999999
Q ss_pred cccccChHHHHHHHH----hCCCch------------HHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHH
Q 002411 140 GWDAFGLPAEQYAIE----TGTHPK------------ITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (926)
Q Consensus 140 G~D~~Glpie~~a~~----~g~~~~------------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~ 203 (926)
||||||+|+|.++++ .|++++ +++.++++.|++||++||+++||+|+|+|+|+.|+++++|+|.
T Consensus 79 G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~ 158 (862)
T 1gax_A 79 GTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFS 158 (862)
T ss_dssp EEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHH
Confidence 999999999988764 466543 6789999999999999999999999999999999999999999
Q ss_pred HHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHh
Q 002411 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (926)
Q Consensus 204 ~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (926)
+|+++|+||++.++|+|||.|+|+|||+||++.. .
T Consensus 159 ~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e--~------------------------------------------- 193 (862)
T 1gax_A 159 RYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEP--T------------------------------------------- 193 (862)
T ss_dssp HHHTTSSEEEECCEEEEETTTTEEECGGGEEECC--E-------------------------------------------
T ss_pred HHHHCCCEEecccccccCCCcCcccccccccccc--c-------------------------------------------
Confidence 9999999999999999999999999999997421 1
Q ss_pred hhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhH
Q 002411 284 WIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTE 363 (926)
Q Consensus 284 ~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 363 (926)
.+.+++|+|++.+. .+|+|||||||||+|++||||||+++. |
T Consensus 194 ---~g~~~~v~f~~~~~------~~l~v~TTrPeTl~g~~avav~P~~~r---------------y-------------- 235 (862)
T 1gax_A 194 ---PGKLYTLRYEVEGG------GFIEIATVRPETVFADQAIAVHPEDER---------------Y-------------- 235 (862)
T ss_dssp ---EEEEEEEECCCSSS------CCCEEEESCSGGGTTCCCEEECSSCCT---------------T--------------
T ss_pred ---cceEEEEEEEecCC------CEEEEEeCCccccccceEEEECCCccH---------------H--------------
Confidence 12346899998531 589999999999999999999999853 1
Q ss_pred hhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccc
Q 002411 364 LQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYT 443 (926)
Q Consensus 364 ~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~ 443 (926)
..|.|+++.||++|+.+||+.++||++++|||+||+|||||++||++|++||||++++++++
T Consensus 236 ------~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~------------ 297 (862)
T 1gax_A 236 ------RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE------------ 297 (862)
T ss_dssp ------CSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTT------------
T ss_pred ------HHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCC------------
Confidence 13689999999999999999999999999999999999999999999999999999999875
Q ss_pred cCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee--------------------------------------
Q 002411 444 GEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK-------------------------------------- 485 (926)
Q Consensus 444 ~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~-------------------------------------- 485 (926)
|.+.... ....|.|+.+.+|++.|+++|++.|.+.+.
T Consensus 298 --G~~~~~~---~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~ 372 (862)
T 1gax_A 298 --GRMEGER---VPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLK 372 (862)
T ss_dssp --SBBCSSS---SCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHH
T ss_pred --Ccccccc---CCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHH
Confidence 3332111 002489999999999999999998865321
Q ss_pred ------Eee--------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCcc
Q 002411 486 ------VNY--------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLS 545 (926)
Q Consensus 486 ------~~~--------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~ 545 (926)
+++ +++|||||||||||+|||+|+|++|+.+. +...+++ .. +.
T Consensus 373 ~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~-v~~~~~l---~~----------~~--- 435 (862)
T 1gax_A 373 GLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVN-VPRPERY---LE----------DP--- 435 (862)
T ss_dssp HHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEE-CCCGGGT---TC----------CC---
T ss_pred HHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEE-Eeccccc---cc----------cc---
Confidence 121 57999999999999999999998877543 3332110 00 00
Q ss_pred ccccceecccCCCCC-CCcccCCCcCcccccc-chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhh
Q 002411 546 KAVSWVQTTEHSSGK-PARRETSTMPQWAGSC-WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 546 ~~~~w~~~~~~~~g~-~~~re~d~mD~WfdSs-w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw 623 (926)
..|+.||. .++|++|||||||||+ |+|+++++|.+..+ .++|||+|+|++|+||+ |||
T Consensus 436 -------~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~------~~~~~P~d~~v~G~Dii-------~~W 495 (862)
T 1gax_A 436 -------TSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETED------LKAFYPGDVLVTGYDIL-------FLW 495 (862)
T ss_dssp -------CSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHH------HHHSCSBSCEEEEGGGT-------TTT
T ss_pred -------hhhhhcCchheecCCcccceeeccCCcchhhccCCCchHH------HHhhCCceEEecCcccc-------ccH
Confidence 15788886 7999999999999997 99999999965432 26788999999999986 566
Q ss_pred hchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCc
Q 002411 624 HKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGA 703 (926)
Q Consensus 624 ~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGa 703 (926)
+..+. +++.++.+..||++|++ ||++++.+ |+|||||+||+|+|.++|++|||
T Consensus 496 ~a~~~-----------------~~~~~~~g~~Pfk~v~~--hG~vld~~--------G~KMSKSlGNvIdP~dli~~yGa 548 (862)
T 1gax_A 496 VSRME-----------------VSGYHFMGERPFKTVLL--HGLVLDEK--------GQKMSKSKGNVIDPLEMVERYGA 548 (862)
T ss_dssp HHHHH-----------------HHHHHHSSSCSBSEEEE--ECCEECTT--------SCBCCTTTTCCCCHHHHHHHHCH
T ss_pred HHHHH-----------------HHHHHhcCCCcccEEEE--eeeEEcCC--------CCCccccCCCCCCHHHHHHHcCh
Confidence 54321 23344567789999998 79999876 99999999999999999999999
Q ss_pred hhhhHHhhhcCCcCCCCcCCchhhHHHHHHHHHHHHHH---hcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHH
Q 002411 704 DSLRLYEMFMGPFRDSKTWNTSGIEGVHRFLGRMWRLI---VGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEE 780 (926)
Q Consensus 704 D~lRl~ll~~~~~~~~~~~~~~~i~~~~r~L~r~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~ 780 (926)
|+||||+++.++++++++|+++.+.++.+|++++||.+ ..+. .+ +.+. .......|+|+++++++++++++++
T Consensus 549 DalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~-~~--~~~~-~~~~~~~D~~il~~l~~~~~~v~~a 624 (862)
T 1gax_A 549 DALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSR-EG--FQAK-EDTPTLADRFMRSRLSRGVEEITAL 624 (862)
T ss_dssp HHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHS-SS--CCCC-BCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcc-cC--CCCc-cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999754 2221 11 1110 0112345789999999999999999
Q ss_pred HhcccHHHHHHHHHHHHH-HHhccc----------------cchHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccC
Q 002411 781 IEGTRFNTGISAMMEFIN-AAYKWE----------------KHPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYES 843 (926)
Q Consensus 781 ~e~~~f~~ai~~l~~f~~-~~~~~~----------------~~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~ 843 (926)
|++|+|++|++.+++|++ .+.+|+ ..+.++|+.+++||+|||||+|||||+.|+.++||+.++
T Consensus 625 ~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~~~sv~~~~ 704 (862)
T 1gax_A 625 YEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTGKEELALEA 704 (862)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHCCSCGGGSC
T ss_pred HHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhccHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCeEEecC
Confidence 999999999999999995 444443 123468999999999999999999999998778999999
Q ss_pred CCCCC
Q 002411 844 FPKAN 848 (926)
Q Consensus 844 WP~~d 848 (926)
||+++
T Consensus 705 wP~~~ 709 (862)
T 1gax_A 705 WPEPG 709 (862)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99987
No 4
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=2.1e-129 Score=1206.39 Aligned_cols=671 Identities=25% Similarity=0.355 Sum_probs=527.2
Q ss_pred hhhhcccCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcc
Q 002411 56 KQQVVKRAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNV 135 (926)
Q Consensus 56 ~~~~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V 135 (926)
|++.++.+|++.++|++||++|+++++|+...+.+.++++|+|++|||||||. |||||++|++++|+++||+||+||+|
T Consensus 10 p~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~-lHiGHa~n~~~~Dii~Ry~rm~G~~v 88 (917)
T 1ffy_A 10 PKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN-LHMGHALNKILKDFIVRYKTMQGFYA 88 (917)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSC-CCHHHHHHHHHHHHHHHHHHTTTCBC
T ss_pred CCCCCCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCc-chHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34556677999999999999999999998764345678999999999999998 99999999999999999999999999
Q ss_pred cccccccccChHHHHHHHHhCCCc------------hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHH
Q 002411 136 LHPMGWDAFGLPAEQYAIETGTHP------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFL 203 (926)
Q Consensus 136 ~~~~G~D~~Glpie~~a~~~g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~ 203 (926)
+|++||||||+|||++|++.|+++ ++++.++++.|+++|++||+++||+++|.||||.|+++++|+|.
T Consensus 89 ~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~ 168 (917)
T 1ffy_A 89 PYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFG 168 (917)
T ss_dssp CCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHH
T ss_pred CCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHH
Confidence 999999999999999999999876 57899999999999999999999999999999999999999999
Q ss_pred HHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHh
Q 002411 204 QLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRN 283 (926)
Q Consensus 204 ~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~ 283 (926)
+|+++|+||++.++|+|||.|+|+||++||++..
T Consensus 169 ~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d---------------------------------------------- 202 (917)
T 1ffy_A 169 EMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHD---------------------------------------------- 202 (917)
T ss_dssp HHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEE----------------------------------------------
T ss_pred HHHHcCCeEecccceeccCCCCcCcchhhhhccc----------------------------------------------
Confidence 9999999999999999999999999999997421
Q ss_pred hhccCCCceEEEEeecCCCC-ccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHh
Q 002411 284 WIGRSEGAEMDFRVLDSDGQ-ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERT 362 (926)
Q Consensus 284 ~i~~s~~~~v~f~~~~~~~~-~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 362 (926)
.+|.+++|+|++.+..|. ..+.+++||||||||||||+||||||+++|+.+.+.++.....+++.+.......+++.
T Consensus 203 --~~~~~~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~ 280 (917)
T 1ffy_A 203 --KRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKA 280 (917)
T ss_dssp --EEEEEEECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSS
T ss_pred --ccCceEEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccc
Confidence 135667888888643210 02479999999999999999999999999987665443222234444433333322221
Q ss_pred ---HhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccc
Q 002411 363 ---ELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSE 439 (926)
Q Consensus 363 ---~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~ 439 (926)
.+.+.+|..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++ |.+
T Consensus 281 ~~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~-G~~---- 355 (917)
T 1ffy_A 281 SIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDK-GVF---- 355 (917)
T ss_dssp CCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSS-SCC----
T ss_pred eeeeeeeeecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCC-cee----
Confidence 233445667999999999999999999999999999999999999999999999999999999999764 322
Q ss_pred cccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCce----------------eEee---------------
Q 002411 440 KAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKK----------------KVNY--------------- 488 (926)
Q Consensus 440 ~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~----------------~~~~--------------- 488 (926)
++++ ..|.|+.+.+|++.|+++|++.|.... .+.|
T Consensus 356 ---~~~~-----------~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~ 421 (917)
T 1ffy_A 356 ---TEEG-----------GQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQ 421 (917)
T ss_dssp ---CTTC-----------SSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHH
T ss_pred ---CCcc-----------cccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHH
Confidence 2211 247888888888888888888765311 1111
Q ss_pred -------------------------ecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCC
Q 002411 489 -------------------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPP 543 (926)
Q Consensus 489 -------------------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~ 543 (926)
+++||||||||+||+|||+|||++ |+++ ++++. +..++.+ +...|...+.
T Consensus 422 ~~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~-~~~~~-~~~i~~~--~~~~g~~~W~ 496 (917)
T 1ffy_A 422 DILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEII-MTKET-VNHVADL--FAEHGSNIWF 496 (917)
T ss_dssp HHHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEE-CCHHH-HHHHHHH--HHHHCTHHHH
T ss_pred HHHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEe-cCHHH-HHHHHHH--hhhcCCcccc
Confidence 247999999999999999999976 5443 44432 2222211 1112210000
Q ss_pred ccccccce--ecccCCCCC-CCcccCCCcCcccccc--chhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHH
Q 002411 544 LSKAVSWV--QTTEHSSGK-PARRETSTMPQWAGSC--WYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLL 618 (926)
Q Consensus 544 l~~~~~w~--~~~~~~~g~-~~~re~d~mD~WfdSs--w~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLl 618 (926)
-.....|. ...||.||. .++|++|||||||||+ |+++. ..+ . +..+|+|+|++|+||+
T Consensus 497 ~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l-~~~---~--------~~~~P~Dl~~~G~D~~----- 559 (917)
T 1ffy_A 497 EREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVL-ETR---P--------ELSFPADMYLEGSDQY----- 559 (917)
T ss_dssp HSCHHHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTT-TTS---T--------TCCSSBSEEEEEGGGG-----
T ss_pred cCCHHHhcccccccccCCcccccccCCCcCeecCCCCCHHHHc-CCc---h--------hcCCCceEEEEEeccc-----
Confidence 01112233 247999985 7999999999999984 55432 111 0 1236999999999996
Q ss_pred HhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhh
Q 002411 619 YARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVV 698 (926)
Q Consensus 619 y~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii 698 (926)
|||++.+. +++.++.+..||++|++ ||||++.+ |+|||||+||+|+|.++|
T Consensus 560 --r~wf~~~l-----------------~~s~~~~g~~Pfk~v~~--hG~V~d~~--------G~KMSKSlGNvV~P~dvi 610 (917)
T 1ffy_A 560 --RGWFNSSI-----------------TTSVATRGVSPYKFLLS--HGFVMDGE--------GKKMSKSLGNVIVPDQVV 610 (917)
T ss_dssp --TTHHHHHH-----------------HHHHHHHSSCSBSEEEE--ECCEECTT--------SCCCCSSSSCCCCHHHHH
T ss_pred --ccHHHHHH-----------------HHHHHhhCCCcccceeE--eeeEEcCC--------CcCcccccCCcCChHHHH
Confidence 88865421 34445567889999998 79999865 999999999999999999
Q ss_pred hhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHHH---HHHHHHHHhcCCCCCCCCCC--Ccc--cCCCCchHHHHHHHH
Q 002411 699 TEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF---LGRMWRLIVGSSLPDGTFKG--GTV--VNDEEPTLEQLCTLH 771 (926)
Q Consensus 699 ~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~---L~r~~~~~~~~~~~~~~~~~--~~~--~~~~~~d~~~l~~l~ 771 (926)
++||||+||||+++ ++++++++|+++.+.++.++ |.|++++++++.. .+.+ +.. ......|++++++++
T Consensus 611 ~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~---~~~~~~~~v~~~~l~~~D~~il~~l~ 686 (917)
T 1ffy_A 611 KQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN---DFNPDTDSIPESELLEVDRYLLNRLR 686 (917)
T ss_dssp HHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTST---TCCHHHHCCCGGGSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhh---ccCcccccCCccccCHHHHHHHHHHH
Confidence 99999999999997 78899999999998887555 4455556655431 1211 001 112345788999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH-HHhccc----------------------cchHHHHHHHHHHhhchhhHHHHH
Q 002411 772 KCIAKVTEEIEGTRFNTGISAMMEFIN-AAYKWE----------------------KHPRKIIEPFILLLAPYAPHMSEE 828 (926)
Q Consensus 772 ~~i~~v~~~~e~~~f~~ai~~l~~f~~-~~~~~~----------------------~~~~~~l~~l~~lLaP~~P~~aEe 828 (926)
+++++++++|++|+|++|++.+++|++ ++++|+ ..++.+++.+++||+|||||+|||
T Consensus 687 ~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~aEe 766 (917)
T 1ffy_A 687 EFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEE 766 (917)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence 999999999999999999999999998 454432 012468999999999999999999
Q ss_pred HHHHcCC--CCCccccCCCCCCc
Q 002411 829 LWFRLGH--SNSLAYESFPKANP 849 (926)
Q Consensus 829 lw~~L~~--~~sv~~~~WP~~de 849 (926)
||+.|+. ++||+.+.||++++
T Consensus 767 iw~~l~~~~~~sv~~~~wP~~~~ 789 (917)
T 1ffy_A 767 VWSHTPHVKEESVHLADMPKVVE 789 (917)
T ss_dssp HHTTSTTCSSSSGGGSCCCCCCC
T ss_pred HHHHcccCCCCCeEecCCCCCCc
Confidence 9999986 67999999999876
No 5
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=3.7e-127 Score=1184.33 Aligned_cols=670 Identities=24% Similarity=0.388 Sum_probs=536.5
Q ss_pred cCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc
Q 002411 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (926)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (926)
..|++.++|++||++|+++++|+...+.+.++++|++++|||||||. |||||+++++++|+++||+||+||+|++++||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~-lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~ 84 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGL-PHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSC-CCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCC-CchhhhHhHHHHHHHHHHHHhcCCcccccccc
Confidence 67999999999999999999998764334578999999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh-CCCc----------------hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHH
Q 002411 142 DAFGLPAEQYAIET-GTHP----------------KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQ 204 (926)
Q Consensus 142 D~~Glpie~~a~~~-g~~~----------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~ 204 (926)
||||+|||++|++. |.++ ++++.++++.|+++|++||+++||++++.|+||.|+++++|+|.+
T Consensus 85 D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~ 164 (821)
T 1ile_A 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKN 164 (821)
T ss_dssp CCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHH
Confidence 99999999999985 8764 457778899999999999999999999999999999999999999
Q ss_pred HhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhh
Q 002411 205 LLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNW 284 (926)
Q Consensus 205 L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~ 284 (926)
|+++|+||++.++|+|||.|+|+|||+||++|+++++
T Consensus 165 L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~------------------------------------------- 201 (821)
T 1ile_A 165 LFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ------------------------------------------- 201 (821)
T ss_dssp HHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE-------------------------------------------
T ss_pred HHHcCCeeecCcceEecCCCCCcccHhHhhcCccccc-------------------------------------------
Confidence 9999999999999999999999999999977765543
Q ss_pred hccCCCceEEEEeecCCC-CccceeEEEeecCCccccCCcEEEECCCCccchhcccccc----hhHHHHHHHHHhccchh
Q 002411 285 IGRSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQ----SQNIEEYKNLASRKSDL 359 (926)
Q Consensus 285 i~~s~~~~v~f~~~~~~~-~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~----~~~~~~y~~~~~~~~~~ 359 (926)
+.+++|+|++.+... ...+.+|+||||||||||||+||||||+++|+.....++. ...++.+.. ..
T Consensus 202 ---~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~-----~~- 272 (821)
T 1ile_A 202 ---DPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLG-----EG- 272 (821)
T ss_dssp ---EEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTC-----TT-
T ss_pred ---CceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHh-----hC-
Confidence 344689999853200 0124799999999999999999999999999877653221 122333321 01
Q ss_pred hHhHhhhhccccccceEEecCCC---CCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCc
Q 002411 360 ERTELQKEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSS 436 (926)
Q Consensus 360 ~~~~~~~~~~~~l~g~~~~~P~~---~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~ 436 (926)
...+...+|..|.|+.+.||+. ++.+||+.++||++++|||+||+|||||++||++|++||||++++|++.
T Consensus 273 -~~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~----- 346 (821)
T 1ile_A 273 -TQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEE----- 346 (821)
T ss_dssp -SCEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTT-----
T ss_pred -cEEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCC-----
Confidence 1123345566799999999985 8999999999999999999999999999999999999999999999764
Q ss_pred ccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee-------------------------------
Q 002411 437 QSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK------------------------------- 485 (926)
Q Consensus 437 ~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~------------------------------- 485 (926)
|.+.++ . |.|+.+.+|++.|++.|.+.|.+.+.
T Consensus 347 ---------G~~~~~------~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~ 410 (821)
T 1ile_A 347 ---------GKLLVE------P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTL 410 (821)
T ss_dssp ---------SBBCSG------G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGG
T ss_pred ---------CcCccc------C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHH
Confidence 444332 2 78999999999999999998865332
Q ss_pred -----------Eee---------------ecCCeeeccccccCCccCceEeCCCCccccc-CccccCccCCcccccCCCC
Q 002411 486 -----------VNY---------------KLRDWLFARQRYWGEPIPVVFLDGTGETVPL-HEAELPLTLPELDDFTPTG 538 (926)
Q Consensus 486 -----------~~~---------------~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~-~~~~l~~~lp~~~~~~~~g 538 (926)
++| +++||||||||+||+|||+|+|++||.+.++ +.+++. ..+. +..+ |
T Consensus 411 ~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~-~~~~--~~~~-~ 486 (821)
T 1ile_A 411 FKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELK-ARAT--KPLP-E 486 (821)
T ss_dssp GHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHH-HHBS--SCCC-S
T ss_pred HHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHH-hhcc--cccc-c
Confidence 122 4789999999999999999999988865443 223320 0000 0000 0
Q ss_pred CCCCCccccccceecccCCCCCCCcccCCCcCccccccc-hhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhH
Q 002411 539 TGEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCW-YYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHL 617 (926)
Q Consensus 539 ~~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw-~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HL 617 (926)
. ........+|+...|| ||++++|++|||||||||+| ++....+|.+..+.+ ++|+|+|+|++|+||+
T Consensus 487 ~-~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~~~~~f-----~~~~P~dl~~~G~D~~---- 555 (821)
T 1ile_A 487 P-FDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVF-----RESFPADFIAEGIDQT---- 555 (821)
T ss_dssp S-CCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHTTTTTTSCHHHH-----HHHSSBSBEEEEGGGG----
T ss_pred h-hhhccccccccccCCC-CCCchhhcccccceecccccchHhhcCCCccchHHH-----hhcCCcccccchhhhh----
Confidence 0 0111122355667898 99999999999999999984 556667776543222 4578999999999996
Q ss_pred HHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchh
Q 002411 618 LYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDV 697 (926)
Q Consensus 618 ly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~ei 697 (926)
|||+..+. +++.++.+..||++|++ ||++++.+ |+|||||+||+|+|.++
T Consensus 556 ---r~w~~~~~-----------------~~~~~~~~~~pf~~v~~--hg~vl~~~--------G~KMSKS~GNvV~p~dl 605 (821)
T 1ile_A 556 ---RGWFNSLH-----------------QLGVMLFGSIAFKNVIC--HGLILDEK--------GQKMSKSKGNVVDPWDI 605 (821)
T ss_dssp ---GTHHHHHH-----------------HHHHHHHSSCSBSEEEE--ECCEECTT--------SSCCCTTTTCCCCHHHH
T ss_pred ---ccHHHHHH-----------------HHHHHhcCCCCcceEEE--EeeEECCC--------CCCCCccCCCCCCHHHH
Confidence 88875422 24455567789999998 79999865 99999999999999999
Q ss_pred hhhcCchhhhHHhhhcCCcCCCCcCCchhhHH-HHHHHHHHHHHHhcC----CCCCCCCCC-Cc--ccCCCCchHHHHHH
Q 002411 698 VTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG-VHRFLGRMWRLIVGS----SLPDGTFKG-GT--VVNDEEPTLEQLCT 769 (926)
Q Consensus 698 i~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~-~~r~L~r~~~~~~~~----~~~~~~~~~-~~--~~~~~~~d~~~l~~ 769 (926)
|++||||++|||+|+.++++++.+|+++.+.+ +.++++++||++... ... .+.+ .. .......|++++++
T Consensus 606 i~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ll~~ 683 (821)
T 1ile_A 606 IRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLD--RPDLKNPPPPEKRPEMDRWLLAR 683 (821)
T ss_dssp HTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH--CCCTTSCCCSTTSCHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCcccccccccCCHHHHHHHHH
Confidence 99999999999999999899999999999999 588999998865210 000 1111 00 01123357888999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhccc----------c-----------chHHHHHHHHHHhhchhhHHHH
Q 002411 770 LHKCIAKVTEEIEGTRFNTGISAMMEFI-NAAYKWE----------K-----------HPRKIIEPFILLLAPYAPHMSE 827 (926)
Q Consensus 770 l~~~i~~v~~~~e~~~f~~ai~~l~~f~-~~~~~~~----------~-----------~~~~~l~~l~~lLaP~~P~~aE 827 (926)
+++++++++++|++|+|++|++.+++|+ +.+.+++ . .+.++|+.+++||+|||||+||
T Consensus 684 l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~~l~~~l~~~~~lLaP~~P~~ae 763 (821)
T 1ile_A 684 MQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAE 763 (821)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHHHHHHHHHHHHHcCCccchHHH
Confidence 9999999999999999999999999999 5544432 0 1347899999999999999999
Q ss_pred HHHHHcCCC-----C-CccccCCCCCCcccCC
Q 002411 828 ELWFRLGHS-----N-SLAYESFPKANPDYLK 853 (926)
Q Consensus 828 elw~~L~~~-----~-sv~~~~WP~~de~~l~ 853 (926)
|||+.|+.. + ||+.+.||++++..++
T Consensus 764 elw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~ 795 (821)
T 1ile_A 764 VLWQNLVRSVRLEAKESVHLADWPEADPALAD 795 (821)
T ss_dssp HHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCC
T ss_pred HHHHhccccccCCCCCceEeecCCCCCcccCC
Confidence 999999863 5 9999999999876553
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.3e-116 Score=1096.98 Aligned_cols=669 Identities=26% Similarity=0.407 Sum_probs=496.7
Q ss_pred cCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc
Q 002411 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (926)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (926)
..|||.++|++||++|+++++|+...+...++++|++++|||||||. |||||++|++++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~-lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSC-CBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCC-cchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 46999999999999999999999874322234899999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh---------------C---------CCchHHHHHHHHHHHHHHHHcCccccccCccccCC--hhHH
Q 002411 142 DAFGLPAEQYAIET---------------G---------THPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYY 195 (926)
Q Consensus 142 D~~Glpie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d--~~y~ 195 (926)
||||+|||.+|.+. | ..|++++.++++.|++||++||+++||+|+|.|+| |.|+
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~ 160 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHH
Confidence 99999999887542 2 35788999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcH
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 275 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~ 275 (926)
++++|+|.+|+++|+||++.++|+|||.|+|+|||+||+++.+. .
T Consensus 161 ~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~---~-------------------------------- 205 (967)
T 1wz2_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDV---P-------------------------------- 205 (967)
T ss_dssp HHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCC---C--------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCc---e--------------------------------
Confidence 99999999999999999999999999999999999999876321 0
Q ss_pred HHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccc----cchhHHHHHH-
Q 002411 276 SVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----TQSQNIEEYK- 350 (926)
Q Consensus 276 ~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~----~~~~~~~~y~- 350 (926)
.+..++|+|++.+. +.+.+++||||||||||||+||||||+++|+.+.+.+ +.....++..
T Consensus 206 -----------~~~~~~v~f~~~~~---~~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i~a~~~~~ 271 (967)
T 1wz2_A 206 -----------ILDYIIIKFELREN---GEVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (967)
T ss_dssp -----------EECCEEEEEECCCS---SSCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEEEEHHHHH
T ss_pred -----------eceeEEEEEEecCC---CCceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeeehHHHHHH
Confidence 12345789998432 1237899999999999999999999999998765432 1100001111
Q ss_pred HHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHH----------HHHc
Q 002411 351 NLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKF 420 (926)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~k~ 420 (926)
......... ..+.+.+|..|+|+++.||++++++||++++||++++|||+||+|||||++||++ |++|
T Consensus 272 ~~~~~~~~~--~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~ 349 (967)
T 1wz2_A 272 KLSFQDREI--EVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349 (967)
T ss_dssp HHHHSSCEE--EEEEECCSSTTSSCEEECSSSSCEEEEEECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTT
T ss_pred HHHhhccCc--EEEEEEEchhhcCCEEECCCCCCceEEEecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHc
Confidence 111111111 1123345567999999999999999999999999999999999999999999974 6789
Q ss_pred CCc--------eeeeecCCC-CCCc---------------------cccccccc---CceEeccCCcccccccCCCCHHH
Q 002411 421 DIS--------IHSVVMPDD-ESSS---------------------QSEKAYTG---EGLIVNSSNLISGLDINGLSCQE 467 (926)
Q Consensus 421 ~Lp--------i~~vv~~~~-~~~~---------------------~~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~ 467 (926)
||| ++++|+.++ |... ....+|.+ +|++. . ..+.|+.+.+
T Consensus 350 ~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~-~------g~~~G~~v~e 422 (967)
T 1wz2_A 350 DIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-V------PPYEGKPVQE 422 (967)
T ss_dssp CCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC-S------SSSCSSBHHH
T ss_pred CCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe-c------cCcCCcCHHH
Confidence 987 777775432 1000 01123433 57775 3 2599999999
Q ss_pred HHHHHHHHHHHcCCCce-------------------e-------E------------------ee--------------e
Q 002411 468 ATSKVIEWAEKTGNGKK-------------------K-------V------------------NY--------------K 489 (926)
Q Consensus 468 a~~~i~~~l~~~g~~~~-------------------~-------~------------------~~--------------~ 489 (926)
|++.|+++|.+.|.+.. . + ++ +
T Consensus 423 a~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~ 502 (967)
T 1wz2_A 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDW 502 (967)
T ss_dssp HTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhhc
Confidence 99999999998774210 0 0 00 3
Q ss_pred cCCeeeccccccCCccCc---eEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCC-Cccc
Q 002411 490 LRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKP-ARRE 565 (926)
Q Consensus 490 l~DW~ISRQR~WG~PIPv---~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~-~~re 565 (926)
++||||||||+||+|||+ |.|+. .+++.+++....+.++.. .....+|.+ -.-.
T Consensus 503 l~DW~ISRqr~WG~piP~d~~~~~~~------~~ds~iYv~~~~~~~~~~----------------~~~~~~g~~~~~l~ 560 (967)
T 1wz2_A 503 LDKKACARKIGLGTPLPWDPEWVIES------LSDSTIYMAYYTISRHIN----------------KLRQEGKLDPEKLT 560 (967)
T ss_dssp CCEECCCBSSSSSEECTTCTTSEECH------HHHTTSTHHHHHHHHHHH----------------HHHHTTCCCGGGCC
T ss_pred ccCeeeccCCCCCccCCcCccccccc------CCCCceEeehhhhhhHHH----------------HHHHhcCCChHHcC
Confidence 679999999999999996 33321 122222221100000000 000001110 0113
Q ss_pred CCCcCccccc----c--chhh-hhcCCCCChhhcc--hhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCC
Q 002411 566 TSTMPQWAGS----C--WYYL-RFMDPKNSKELVD--KTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDG 636 (926)
Q Consensus 566 ~d~mD~WfdS----s--w~~l-~~~~p~~~~~~~~--~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g 636 (926)
++++|+||.+ + |.+. ..+.|.. .+. +...++|||+|+|++|+||+.+|++|+++++.++
T Consensus 561 ~~~~d~~~~~~~~~g~~~~~~~~sG~~~~---~~~~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~--------- 628 (967)
T 1wz2_A 561 PEFFDYIFLEEFSEDKEKELEKKTGIPAE---IIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAI--------- 628 (967)
T ss_dssp HHHHHHTTTSCCCHHHHHHHHHHHTCCHH---HHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHH---------
T ss_pred cccceeeccCccccCccccchhhcCCCHH---HHhhhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHH---------
Confidence 4677888754 1 1110 1222321 111 1223688999999999999999999988776432
Q ss_pred CccccCcccccccccccCCCc-ceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCC
Q 002411 637 SYISADSTDTLGEYEQESIPE-EKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGP 715 (926)
Q Consensus 637 ~~~s~~~~~~~s~~~~~~~P~-~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~ 715 (926)
.+..|+ +.+++ ||||+++ |+|||||+||+|+|.++|++||||++|||+|++++
T Consensus 629 ---------------~~~~~~pk~v~~--~G~v~~~---------G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~ 682 (967)
T 1wz2_A 629 ---------------FREEHWPKGIAV--NGFGTLE---------GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAE 682 (967)
T ss_dssp ---------------SCSTTSCCCEEE--ECCEEES---------SSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCC
T ss_pred ---------------cCcccccceEEE--eeEEeeC---------CEEccccccCCCCHHHHHHHhChHHHHHHHHhCCC
Confidence 122233 67776 7999985 99999999999999999999999999999998899
Q ss_pred cCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-H
Q 002411 716 FRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-M 794 (926)
Q Consensus 716 ~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l-~ 794 (926)
++++.+|+++.+.++.++++|+|+++...... . .+ ........|+++++++++++++++++|++|+|++|+.++ +
T Consensus 683 ~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-~--~~-~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 683 HDSDFDWRRKEVGKLRKQIERFYELISQFAEY-E--VK-GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFY 758 (967)
T ss_dssp TTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS-C--CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC-C--CC-CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999987432100 0 00 001123357899999999999999999999999999865 5
Q ss_pred HHHHHHhcccc------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCCCCccccCCCCCCcccCC
Q 002411 795 EFINAAYKWEK------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHSNSLAYESFPKANPDYLK 853 (926)
Q Consensus 795 ~f~~~~~~~~~------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~~sv~~~~WP~~de~~l~ 853 (926)
.+++.++.|.. .+.++|+.+++||+|||||+|||||+.|+.++||+.+.||++++..++
T Consensus 759 ~l~~~~n~Yi~~~k~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~~~sv~~~~wP~~~~~~~d 829 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGGEGFVSLAKWPEPVEEWWN 829 (967)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSCCSCGGGSCCCCCCSSCCC
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCceeccCCCCCCcccCC
Confidence 77777765421 245789999999999999999999999998889999999999876543
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-109 Score=1026.98 Aligned_cols=650 Identities=26% Similarity=0.416 Sum_probs=479.2
Q ss_pred cCCCchhhhHHHHHHHHhCCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc
Q 002411 62 RAYPFHEIEPKWQSYWENNRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW 141 (926)
Q Consensus 62 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~ 141 (926)
..|||.++|++||++|+++++|+...+.+.++++|+|++|||||||. |||||++|++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~-lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~ 80 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGH-LHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSC-CBHHHHHHHHHHHHHHHHHHHHTCEEECCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCC-CccccchhHHHHHHHHHHHHcCCCccCcCCcc
Confidence 45999999999999999999999875434467899999999999998 99999999999999999999999999999999
Q ss_pred cccChHHHHHHHHh------------------------CCCchHHHHHHHHHHHHHHHHcCccccccCccccCC--hhHH
Q 002411 142 DAFGLPAEQYAIET------------------------GTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIE--PAYY 195 (926)
Q Consensus 142 D~~Glpie~~a~~~------------------------g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d--~~y~ 195 (926)
||||+|+|..|.+. +..|+++++++.+.|+++|++||+++||+++|+|+| +.|.
T Consensus 81 D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~ 160 (810)
T 1wkb_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (810)
T ss_dssp BCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHH
T ss_pred CCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHH
Confidence 99999999877532 246788899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcH
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPE 275 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~ 275 (926)
++++|+|.+|+++|+||++.++|+|||.|+|+|||+||+++.+. . +
T Consensus 161 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~---~-------------~------------------ 206 (810)
T 1wkb_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDV---P-------------I------------------ 206 (810)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSC---C-------------E------------------
T ss_pred HHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCC---c-------------c------------------
Confidence 99999999999999999999999999999999999999976421 0 0
Q ss_pred HHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccc----cchhHHHHHHH
Q 002411 276 SVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVST----TQSQNIEEYKN 351 (926)
Q Consensus 276 ~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~----~~~~~~~~y~~ 351 (926)
+..++|+|++.+.+ .+.+++||||||||||||+||||||+++|+.+.+.+ +.....++...
T Consensus 207 ------------~~~~~v~f~~~~~~---~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i~~~~~~~ 271 (810)
T 1wkb_A 207 ------------LDYIIIKFELRENG---EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAY 271 (810)
T ss_dssp ------------EEEEEEEEECCSSC---SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEEEEHHHHH
T ss_pred ------------ceeEEEEEEccCCC---CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeeeeHHHHHH
Confidence 12247899985321 237899999999999999999999999998755432 11000011111
Q ss_pred HHh-ccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHH----------HHHc
Q 002411 352 LAS-RKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF----------ALKF 420 (926)
Q Consensus 352 ~~~-~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~----------~~k~ 420 (926)
... ..... ..+.+.+|..|+|+++.||++++++||++++||++++|||+||+|||||++||++ |++|
T Consensus 272 ~~~~~~~~~--~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~ 349 (810)
T 1wkb_A 272 KLSFQDREI--EVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKY 349 (810)
T ss_dssp HHTTSSCEE--EEEEECTTTTTTTCEEECSSSCCEEEEEECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTC
T ss_pred HHHhhhcce--EEEEEEEchhhcCCEEECCCCCCeeEEEecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHc
Confidence 111 10011 1123345557999999999999999999999999999999999999999999975 5788
Q ss_pred CCc--------eeeeecCCCC-CCc---------------------cccccccc---CceEeccCCcccccccCCCCHHH
Q 002411 421 DIS--------IHSVVMPDDE-SSS---------------------QSEKAYTG---EGLIVNSSNLISGLDINGLSCQE 467 (926)
Q Consensus 421 ~Lp--------i~~vv~~~~~-~~~---------------------~~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~ 467 (926)
||| ++++|+.++. ... ....+|.+ +|.+. + ..++|+.+.+
T Consensus 350 ~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~-~------g~~~G~~v~~ 422 (810)
T 1wkb_A 350 DIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK-V------PPYEGKPVQE 422 (810)
T ss_dssp SCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC-S------GGGTTEEHHH
T ss_pred CCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe-c------cCcCCeEHHH
Confidence 987 7888754321 000 01123433 57776 3 2599999999
Q ss_pred HHHHHHHHHHHcCCCce-------------------e---Ee---------e---------------------------e
Q 002411 468 ATSKVIEWAEKTGNGKK-------------------K---VN---------Y---------------------------K 489 (926)
Q Consensus 468 a~~~i~~~l~~~g~~~~-------------------~---~~---------~---------------------------~ 489 (926)
|+..|+++|.+.|.+.. . -+ + +
T Consensus 423 a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~ 502 (810)
T 1wkb_A 423 VKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDW 502 (810)
T ss_dssp HHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhhc
Confidence 99999999999875310 0 01 0 2
Q ss_pred cCCeeeccccccCCccCc---eEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCC-ccc
Q 002411 490 LRDWLFARQRYWGEPIPV---VFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPA-RRE 565 (926)
Q Consensus 490 l~DW~ISRQR~WG~PIPv---~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~-~re 565 (926)
++||||||||+||+|||+ |.|+. ..++.+++....+..+.. .....+|.+. .-.
T Consensus 503 l~Dw~ISRq~~WG~piP~d~~~~~~~------~~~~~iYv~~~~~~~~~~----------------~~~~~~~~~~~~l~ 560 (810)
T 1wkb_A 503 LDKKACARKIGLGTPLPWDPEWVIES------LSDSTIYMAYYTISRHIN----------------KLRQEGKLDPEKLT 560 (810)
T ss_dssp CCCEECEESSSBSCEETTEEEEEECT------TTSSSSHHHHHHHHHHHH----------------HHHHTTCCCGGGCC
T ss_pred ccCccccccCCCCCcCCcCcceeccc------CCCCceeeehhhhHHHHH----------------HhHhhcCCCHHHcC
Confidence 579999999999999995 34432 112222211000000000 0000011100 113
Q ss_pred CCCcCccccc----c--chhh-hhcCCCCChhhcc--hhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCC
Q 002411 566 TSTMPQWAGS----C--WYYL-RFMDPKNSKELVD--KTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDG 636 (926)
Q Consensus 566 ~d~mD~WfdS----s--w~~l-~~~~p~~~~~~~~--~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g 636 (926)
++++|+||.+ + +.+. ..+.|.. .+. +...++|+|+|+|++|+||+.+|++|.++++.+++
T Consensus 561 ~~~~d~~~~~~~~~g~~~~~~~~sg~~~~---~~~~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~-------- 629 (810)
T 1wkb_A 561 PEFFDYIFLEEFSEDKEKELEKKTGIPAE---IIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIF-------- 629 (810)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHSCCHH---HHHHHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHS--------
T ss_pred ccceeeeeccccccCccccchhhhCCCHH---HHHhhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHc--------
Confidence 4567777632 1 1000 1122211 111 12236789999999999999999999888764321
Q ss_pred CccccCcccccccccccCCCc-ceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCC
Q 002411 637 SYISADSTDTLGEYEQESIPE-EKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGP 715 (926)
Q Consensus 637 ~~~s~~~~~~~s~~~~~~~P~-~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~ 715 (926)
+..|+ +.+++ ||||+++ |+|||||+||+|+|.++|++||||++|||+|++++
T Consensus 630 ----------------~~~~~pk~v~~--~G~v~~~---------G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~ 682 (810)
T 1wkb_A 630 ----------------REEHWPKGIAV--NGFGTLE---------GQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAE 682 (810)
T ss_dssp ----------------CGGGSCCEEEE--ECCEEET---------TBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCC
T ss_pred ----------------CccccccEEEE--EeEEEeC---------CeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCC
Confidence 22233 66766 7999985 89999999999999999999999999999998899
Q ss_pred cCCCCcCCchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-H
Q 002411 716 FRDSKTWNTSGIEGVHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAM-M 794 (926)
Q Consensus 716 ~~~~~~~~~~~i~~~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l-~ 794 (926)
++++.+|+++.+.++.++++|+|+++...... . .+. .......|.++++++++++++++++|++|+|++|+.++ +
T Consensus 683 ~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-~--~~~-~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 683 HDSDFDWRRKEVGKLRKQIERFYELISQFAEY-E--VKG-NVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFY 758 (810)
T ss_dssp TTCCEEECHHHHHHHHHHHHHHHHHHHHHHTC-C--CCS-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTH
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHHHhc-c--Ccc-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999987432110 0 000 01122357888999999999999999999999999854 6
Q ss_pred HHHHHHhcccc------------chHHHHHHHHHHhhchhhHHHHHHHHHcC
Q 002411 795 EFINAAYKWEK------------HPRKIIEPFILLLAPYAPHMSEELWFRLG 834 (926)
Q Consensus 795 ~f~~~~~~~~~------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~ 834 (926)
.+++.+|.|.. .+.++|+.+++||+|||||+|||||++||
T Consensus 759 ~l~~~~n~yi~~~k~~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 88888776521 34578999999999999999999999985
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=1.7e-77 Score=713.25 Aligned_cols=463 Identities=22% Similarity=0.294 Sum_probs=350.6
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
+..++|||+.++||+||. |||||+++++++|+++||+||+||+|+|++||||||+|||.+|.++|++|+++++++++.|
T Consensus 6 ~~~k~f~Ittp~pY~nG~-lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAA-PHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCCc-hhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345789999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccC---------ccccC
Q 002411 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG---------VSERG 241 (926)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~---------~~~~~ 241 (926)
++++++|||++|| +++|+|+.|.+.++++|.+|+++|+||++.++|+|||+|+|+|++.||+++ .|++|
T Consensus 85 ~~~~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~s 162 (542)
T 3u1f_A 85 KKCFEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLES 162 (542)
T ss_dssp HHHHHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTT
T ss_pred HHHHHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCC
Confidence 9999999999997 578999999999999999999999999999999999999999999999753 46789
Q ss_pred CCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccC
Q 002411 242 GHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFG 321 (926)
Q Consensus 242 ~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g 321 (926)
|.+++.+..+||||++++|+++|++++++. .+ .
T Consensus 163 g~~ve~~~~~~~f~~l~~~~~~l~~~~~~~-----------------------------~~-----~------------- 195 (542)
T 3u1f_A 163 GHVVTWVSEENYMFRLSAFRERLLEWYHAN-----------------------------PG-----C------------- 195 (542)
T ss_dssp CCBEEEEEEEEEEECGGGGHHHHHHHHHHC-----------------------------TT-----S-------------
T ss_pred CCcceeeccccceecchhHHHHHHHHHhhc-----------------------------cc-----c-------------
Confidence 999999999999999999998877643210 00 0
Q ss_pred CcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCC
Q 002411 322 ATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTG 401 (926)
Q Consensus 322 ~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG 401 (926)
+.|
T Consensus 196 -----~~P------------------------------------------------------------------------ 198 (542)
T 3u1f_A 196 -----IVP------------------------------------------------------------------------ 198 (542)
T ss_dssp -----EES------------------------------------------------------------------------
T ss_pred -----cCC------------------------------------------------------------------------
Confidence 000
Q ss_pred ceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCC
Q 002411 402 AIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGN 481 (926)
Q Consensus 402 ~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~ 481 (926)
...+....+|+.+
T Consensus 199 ----------------------------------------------------------------~~~~~~~~~~~~~--- 211 (542)
T 3u1f_A 199 ----------------------------------------------------------------EFRRREVIRAVEK--- 211 (542)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHH---
T ss_pred ----------------------------------------------------------------chhhHhHhhhhhc---
Confidence 0011223344433
Q ss_pred CceeEeeecCCeeeccccc----cCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCC
Q 002411 482 GKKKVNYKLRDWLFARQRY----WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHS 557 (926)
Q Consensus 482 ~~~~~~~~l~DW~ISRQR~----WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~ 557 (926)
.++||||||||+ ||+|||..- ++
T Consensus 212 -------~l~Dw~ISRq~~~~~~WGipiP~~~----~~------------------------------------------ 238 (542)
T 3u1f_A 212 -------GLPDLSVSRARATLHNWAIPVPGNP----DH------------------------------------------ 238 (542)
T ss_dssp -------CCCCEECEEEGGGGTTCSCEETTEE----EE------------------------------------------
T ss_pred -------cccccCccccccCcCCCCCccCCCc----Ce------------------------------------------
Confidence 368999999998 999999621 11
Q ss_pred CCCCCcccCCCcCccccccchhhhhc----CC-CCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeee
Q 002411 558 SGKPARRETSTMPQWAGSCWYYLRFM----DP-KNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCK 632 (926)
Q Consensus 558 ~g~~~~re~d~mD~WfdSsw~~l~~~----~p-~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~ 632 (926)
++++|||+...|+... +. .......+.......+|+|+|++|+|++.+|.+| |.+.+.
T Consensus 239 ----------~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~---~~a~l~---- 301 (542)
T 3u1f_A 239 ----------XVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIY---WPAFLL---- 301 (542)
T ss_dssp ----------EECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTH---HHHHHH----
T ss_pred ----------eeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccch---hHHHHH----
Confidence 1123333221111100 00 0000000000111225999999999999888654 432210
Q ss_pred cCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 633 DVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 633 ~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
..+..|++.|+. |||+..+ |+|||||+||+|+|.++|++||||+||||+++
T Consensus 302 ------------------~~g~~~~~~v~~--hg~l~~~---------G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~ 352 (542)
T 3u1f_A 302 ------------------SAGLPLPKKIVA--HGWWTKD---------RKKISKSLGNVFDPVEKAEEFGYDALKYFLLR 352 (542)
T ss_dssp ------------------HHTCCCCSCEEE--ECCCEET---------TBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHH
T ss_pred ------------------hhcccccceecc--ccceecC---------CceeccccCCCCChhHHHhhcCchHHHHHHHh
Confidence 124556777876 7887765 99999999999999999999999999999999
Q ss_pred cCCcCCCCcCCchhhHHHHH--HHHHHHHHHhcCCCCCCCCCCCccc---CCCCchHHHHHHHHHHHHHHHHHHhcccHH
Q 002411 713 MGPFRDSKTWNTSGIEGVHR--FLGRMWRLIVGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKCIAKVTEEIEGTRFN 787 (926)
Q Consensus 713 ~~~~~~~~~~~~~~i~~~~r--~L~r~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~ 787 (926)
.++++++.+|+++.+.+..+ ++++++|++.........+ .+..+ .....|+++++++++++++++++|++|+|+
T Consensus 353 ~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~-~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~ 431 (542)
T 3u1f_A 353 ESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINV-NGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQ 431 (542)
T ss_dssp HCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTST-TSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcc-cCCCCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 89999999999999987654 5555665542110000111 11111 123458889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc--------------------hHHHHHHHHHHhhchhhHHHHHHHHHcCCC----CCccccC
Q 002411 788 TGISAMMEFINAAYKWEKH--------------------PRKIIEPFILLLAPYAPHMSEELWFRLGHS----NSLAYES 843 (926)
Q Consensus 788 ~ai~~l~~f~~~~~~~~~~--------------------~~~~l~~l~~lLaP~~P~~aEelw~~L~~~----~sv~~~~ 843 (926)
+|+++|++|++.+|.|.+. ..++|+.+++||+|||||+|||||++||.+ .++....
T Consensus 432 ~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~~~~~~~~~~~~ 511 (542)
T 3u1f_A 432 KAIIAVFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVPEVHRKGIENFE 511 (542)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCCGGGGSSGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCCCccccchhhcc
Confidence 9999999999877765310 125678889999999999999999999854 2344455
Q ss_pred CCCC
Q 002411 844 FPKA 847 (926)
Q Consensus 844 WP~~ 847 (926)
|+..
T Consensus 512 ~~~l 515 (542)
T 3u1f_A 512 FGAV 515 (542)
T ss_dssp TTCS
T ss_pred ccCC
Confidence 6544
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.6e-76 Score=719.68 Aligned_cols=462 Identities=22% Similarity=0.382 Sum_probs=366.8
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhh-hhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLG-YTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~-~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
++|||+.+||||||. |||||+++ ++++|+++||+||+||+|+|++|||+||+||+.+|.+.|++|+++++++++.|++
T Consensus 2 ~~~~itt~~Py~nG~-lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANGP-IHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTSC-CBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCc-hhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 579999999999998 99999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCch---------------------
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANE--------------------- 231 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~--------------------- 231 (926)
+|++|||++|| +++|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.
T Consensus 81 ~~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~ 158 (722)
T 1rqg_A 81 TFQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEV 158 (722)
T ss_dssp HHHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSS
T ss_pred HHHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhh
Confidence 99999998885 7899999999999999999999999999999999999999887764
Q ss_pred --------hhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCC
Q 002411 232 --------EVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQ 303 (926)
Q Consensus 232 --------ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~ 303 (926)
|+++++|++||.+++.+..+||||++++|+++|++++++..||++.++++.+||+.
T Consensus 159 ~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~---------------- 222 (722)
T 1rqg_A 159 CGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEE---------------- 222 (722)
T ss_dssp SCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTT----------------
T ss_pred cccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHC----------------
Confidence 55678899999999999999999999999999999987767888777766666410
Q ss_pred ccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCC
Q 002411 304 ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASG 383 (926)
Q Consensus 304 ~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~ 383 (926)
T Consensus 223 -------------------------------------------------------------------------------- 222 (722)
T 1rqg_A 223 -------------------------------------------------------------------------------- 222 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCC
Q 002411 384 EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGL 463 (926)
Q Consensus 384 ~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl 463 (926)
T Consensus 223 -------------------------------------------------------------------------------- 222 (722)
T 1rqg_A 223 -------------------------------------------------------------------------------- 222 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCCceeEeeecCCeeeccccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCC
Q 002411 464 SCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPP 543 (926)
Q Consensus 464 ~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~ 543 (926)
+++|||||||++||+|||++++..
T Consensus 223 -------------------------gl~dw~ISR~~~WG~piP~~~~g~------------------------------- 246 (722)
T 1rqg_A 223 -------------------------GLEERAITRDLNWGIPVPLDEEDM------------------------------- 246 (722)
T ss_dssp -------------------------CCCCEECEECCSSSCBCSCCCSSS-------------------------------
T ss_pred -------------------------CCcccceeccccCccccCccccCC-------------------------------
Confidence 257999999999999999853210
Q ss_pred ccccccceecccCCCCCCCcccCCCcCccccccchhhhhc--CCCCChhhcchhhhhcCC--C---ceeeecccchhhhh
Q 002411 544 LSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNSKELVDKTKERYWS--P---VDVYVGGAEHAVLH 616 (926)
Q Consensus 544 l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~--~p~~~~~~~~~~~~~~w~--P---vDl~v~G~D~~~~H 616 (926)
+..++++|||+...|+... ++.... .+..+..||. + .++|++|+|++.+|
T Consensus 247 ---------------------~~~~iyvW~da~i~y~~~~~~~~~~~g--~~~~~~~~w~~pd~~~~~~h~~GkDii~fH 303 (722)
T 1rqg_A 247 ---------------------KGKVLYVWFEAPIGYISITIEHFKRIG--KPNEWKKYWLNIDGQTRVIHFIGKDNIPFH 303 (722)
T ss_dssp ---------------------TTCEECHHHHGGGHHHHHHHHHHHHTT--CTTTTHHHHBCSSCCEEEEEEEEGGGHHHH
T ss_pred ---------------------CCCEEEEEeccccchhhhHHHHHhhcC--CchHHHhccCCCCCCCeeEEEccccccccc
Confidence 1136789999876554321 000000 0012335774 3 23899999999888
Q ss_pred HHHhhhhhchhheeeecCCCCccccCcccccccccc-cCCCcceEEeecceeEeccCCccccccccccccccCCCccCcc
Q 002411 617 LLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQ-ESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPD 695 (926)
Q Consensus 617 Lly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~-~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~ 695 (926)
.+ +|.+++... |.....+ .+. ...| ++|+. |||++++ |+|||||+||+|+|.
T Consensus 304 ~~---~wpA~l~~~-----~~~l~~d-------~~rg~~~P-k~v~~--hG~v~~~---------G~KMSKS~GNvV~p~ 356 (722)
T 1rqg_A 304 AI---FWPAFLMAY-----GKYKDEE-------VEAEWNLP-YDIPA--NEYLTLE---------GKKFSTSRNWAIWVH 356 (722)
T ss_dssp HT---HHHHHHHTT-----CCBCSSS-------CCBCBCCC-SBCCE--ECCEEET---------TEECBTTTTBSCBHH
T ss_pred hh---hhHHHHhcc-----CCCcccc-------cccCCCCC-CEEEE--eeeEEeC---------CeeeeeeCCCcCCHH
Confidence 54 354321100 0000000 001 2467 78876 7999985 899999999999999
Q ss_pred hhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHH---------HHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHH
Q 002411 696 DVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEG---------VHRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQ 766 (926)
Q Consensus 696 eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~---------~~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 766 (926)
++|++||+|++|||+++.++++++.+|+++.+.. ..|+++|+++++..+. . +.... .......|.++
T Consensus 357 d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~-~-~~~~~--~~~~~~~d~~l 432 (722)
T 1rqg_A 357 EFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYF-D-GVVPE--RGELDELDREA 432 (722)
T ss_dssp HHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHS-T-TBCCC--CCCCCHHHHHH
T ss_pred HHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCC--cccCCHHHHHH
Confidence 9999999999999999988999999999887755 4567777777774321 0 10100 00112347889
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccc--------------------hHHHHHHHHHHhhchhhHHH
Q 002411 767 LCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEKH--------------------PRKIIEPFILLLAPYAPHMS 826 (926)
Q Consensus 767 l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~~--------------------~~~~l~~l~~lLaP~~P~~a 826 (926)
++++++++++++++|++|+|++|++.+|+|++..|.|.+. ..++++.+++||+|||||+|
T Consensus 433 l~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~a 512 (722)
T 1rqg_A 433 LEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNISLQIVKALGILLEPFLPDAS 512 (722)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 9999999999999999999999999999999877765310 12578999999999999999
Q ss_pred HHHHHHcCCCCCccccCCCCC
Q 002411 827 EELWFRLGHSNSLAYESFPKA 847 (926)
Q Consensus 827 Eelw~~L~~~~sv~~~~WP~~ 847 (926)
||||++|+.+. ...||..
T Consensus 513 eei~~~L~~~~---~~~w~~~ 530 (722)
T 1rqg_A 513 EKIWHLLNLDE---VKRWEFR 530 (722)
T ss_dssp HHHHHHTTCCS---CCCSSCC
T ss_pred HHHHHHcCCCc---ccCchhc
Confidence 99999998653 1578763
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=2.7e-73 Score=673.76 Aligned_cols=444 Identities=23% Similarity=0.390 Sum_probs=355.0
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.++++|+++.++|||||. |||||+++++++|+++||+||+||+|++++|||+||+||+.+|.+.|.+|+++++++++.|
T Consensus 9 ~~~~~~~i~t~~P~~ng~-lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 87 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGV-PHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVF 87 (524)
T ss_dssp --CCEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCC-cccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467889999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccC----ccc-cCCCCe
Q 002411 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG----VSE-RGGHPV 245 (926)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~----~~~-~~~~~~ 245 (926)
++++++|||++| ++++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+|++++.|++++ .|+ +||.++
T Consensus 88 ~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v 165 (524)
T 2x1l_A 88 QRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPV 165 (524)
T ss_dssp HHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBE
T ss_pred HHHHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcc
Confidence 999999999877 8899999999999999999999999999999999999999999999999765 477 899999
Q ss_pred EEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEE
Q 002411 246 IRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYL 325 (926)
Q Consensus 246 ~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v 325 (926)
+.+..+||||++++|+++|++.++. +. ..
T Consensus 166 ~~~~~~qwF~~l~~~~~~l~~~~~~-------------------------------~~---~~----------------- 194 (524)
T 2x1l_A 166 TWTEEQTYFFRLSAYTDRLLALYEE-------------------------------HP---EF----------------- 194 (524)
T ss_dssp EEEEEEEEEECGGGSHHHHHHHHHH-------------------------------CG---GG-----------------
T ss_pred eEEecCCeEeeHHHHHHHHHHHHHh-------------------------------CC---Ce-----------------
Confidence 9999999999999999887764320 00 00
Q ss_pred EECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceee
Q 002411 326 VVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMA 405 (926)
Q Consensus 326 ~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~ 405 (926)
+.|+
T Consensus 195 -i~p~--------------------------------------------------------------------------- 198 (524)
T 2x1l_A 195 -IGPD--------------------------------------------------------------------------- 198 (524)
T ss_dssp -EESH---------------------------------------------------------------------------
T ss_pred -eCCH---------------------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee
Q 002411 406 VPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (926)
Q Consensus 406 ~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~ 485 (926)
..+..+..|+.
T Consensus 199 -------------------------------------------------------------~~~~~~~~~~~-------- 209 (524)
T 2x1l_A 199 -------------------------------------------------------------ARRNEIVSFVS-------- 209 (524)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHT--------
T ss_pred -------------------------------------------------------------HHHHHHHHHHH--------
Confidence 01111222221
Q ss_pred EeeecCCeeeccccc-cCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcc
Q 002411 486 VNYKLRDWLFARQRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARR 564 (926)
Q Consensus 486 ~~~~l~DW~ISRQR~-WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~r 564 (926)
.+++||||||||+ ||+|||. +
T Consensus 210 --~~l~Dw~iSRqr~~WG~~iP~--~------------------------------------------------------ 231 (524)
T 2x1l_A 210 --GGLKDLSISRTTFDWGVPVPD--H------------------------------------------------------ 231 (524)
T ss_dssp --TCCCCEECEESSCCSSCEETT--E------------------------------------------------------
T ss_pred --cCCcccceECCCCCcCccCCC--C------------------------------------------------------
Confidence 1479999999996 9999992 1
Q ss_pred cCCCcCccccccchhhh-hcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCc
Q 002411 565 ETSTMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADS 643 (926)
Q Consensus 565 e~d~mD~WfdSsw~~l~-~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~ 643 (926)
+.+||||||||.|.|+. .++|.++.. .. +.|+|+|+|++|+||+.+|.++ |.+++
T Consensus 232 ~~~~~yvWfds~~~~~~~~g~p~~~~~----~~-~~~~p~di~~~G~D~~~fh~~~---~~a~l---------------- 287 (524)
T 2x1l_A 232 PDHVMYVWVDALTNYLTGVGFPDTESE----SF-RRYWPADLHMIGKDIIRFHTVY---WPAFL---------------- 287 (524)
T ss_dssp EEEEECHHHHHHTHHHHTTTTTCTTSH----HH-HHHCSCSEEEEEGGGHHHHHTH---HHHHH----------------
T ss_pred CCCEEEEecCCchHHHHHcCCCCCchH----HH-HhhCCCeEEEEeechhHhHHHH---HHHHH----------------
Confidence 01378999999987654 456654322 12 2345999999999999888653 43221
Q ss_pred ccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCC
Q 002411 644 TDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWN 723 (926)
Q Consensus 644 ~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~ 723 (926)
.+ .+..|++++++ ||||+++ |+|||||+||+|+|.++|++||+|++|||+++.++++++.+|+
T Consensus 288 -----~~-~g~~~~~~v~~--hG~v~~~---------G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs 350 (524)
T 2x1l_A 288 -----MS-AGLPLPKRIFA--HGWLLNR---------GEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYN 350 (524)
T ss_dssp -----HH-HTCCCCSCEEE--ECCEEEC---------SCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEEC
T ss_pred -----HH-CCCCCCcEEEE--CcEEEeC---------CcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcC
Confidence 01 14567888888 6999985 8999999999999999999999999999999878889999999
Q ss_pred chhhHHHH---------HHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 002411 724 TSGIEGVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMM 794 (926)
Q Consensus 724 ~~~i~~~~---------r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~ 794 (926)
++.+.++. ++++|++.++.... . ..... .......|.+++++++++++++.++|++|+|+.|++.++
T Consensus 351 ~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~-~-~~~~~--~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~ 426 (524)
T 2x1l_A 351 EDAIIGRVNADLANELGNLAQRSLSMVAKNL-G-AAVPD--PGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIW 426 (524)
T ss_dssp HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHS-T-TBCCC--CCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCC--ccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99988765 34455555442211 0 10000 011233477889999999999999999999999999999
Q ss_pred HHHHHHhcccc------------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 795 EFINAAYKWEK------------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 795 ~f~~~~~~~~~------------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
+|++..|.|.. ...++++.+++||+|||||+|||||++|+.+
T Consensus 427 ~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 427 SVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 99987766421 0125778899999999999999999999864
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.1e-72 Score=663.10 Aligned_cols=436 Identities=23% Similarity=0.368 Sum_probs=350.4
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++|||+.++|||||. |||||+++++++|+++||+||+||+|++++|||+||+||+.+|.+.|.++.++++++++.|++
T Consensus 2 ~~~~~i~~p~py~~g~-lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 80 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAE-PHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKR 80 (500)
T ss_dssp CCEEEEECCCEETTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCC-cchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4689999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccc
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQ 252 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~ 252 (926)
+|++||+++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.++.+|.|++||.+++.+...|
T Consensus 81 ~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~ 158 (500)
T 2d5b_A 81 AWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGN 158 (500)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEE
T ss_pred HHHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCc
Confidence 9999999877 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCc
Q 002411 253 WMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHP 332 (926)
Q Consensus 253 ~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~ 332 (926)
|||++++|+++|++.+++. |. .+.|+
T Consensus 159 wf~~l~~~~~~l~~~~~~~--------------------------------------------~~--------~~~p~-- 184 (500)
T 2d5b_A 159 YFFRMEKYRPWLQEYIQEN--------------------------------------------PD--------LIRPE-- 184 (500)
T ss_dssp EEECGGGGHHHHHHHHHTC--------------------------------------------TT--------SEESH--
T ss_pred eEEEcHHHHHHHHHHHHhC--------------------------------------------CC--------eeCCH--
Confidence 9999999998887653210 00 00000
Q ss_pred cchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChh
Q 002411 333 LLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTR 412 (926)
Q Consensus 333 y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~ 412 (926)
T Consensus 185 -------------------------------------------------------------------------------- 184 (500)
T 2d5b_A 185 -------------------------------------------------------------------------------- 184 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecCC
Q 002411 413 DHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLRD 492 (926)
Q Consensus 413 D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~D 492 (926)
..+..+..|+. .+++|
T Consensus 185 ------------------------------------------------------~~~~~~~~~l~----------~~l~D 200 (500)
T 2d5b_A 185 ------------------------------------------------------GYRNEVLAMLA----------EPIGD 200 (500)
T ss_dssp ------------------------------------------------------HHHHHHHHHHT----------SCCCC
T ss_pred ------------------------------------------------------HHHHHHHHHHh----------cCCCC
Confidence 01112223332 13689
Q ss_pred eeecc--ccc-cCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCCc
Q 002411 493 WLFAR--QRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETSTM 569 (926)
Q Consensus 493 W~ISR--QR~-WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~m 569 (926)
||||| ||+ ||+|||. + +.+|+
T Consensus 201 w~iSRp~~~~~WG~piP~--~------------------------------------------------------~~~v~ 224 (500)
T 2d5b_A 201 LSISRPKSRVPWGIPLPW--D------------------------------------------------------ENHVT 224 (500)
T ss_dssp EECEEETTTCCSSCEETT--E------------------------------------------------------EEEEE
T ss_pred eecccccccccCccccCC--C------------------------------------------------------CCCee
Confidence 99999 884 9999995 1 01378
Q ss_pred Cccccccchhhh-hcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccc
Q 002411 570 PQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLG 648 (926)
Q Consensus 570 D~WfdSsw~~l~-~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s 648 (926)
||||||++.|+. .++|.+++ ..++ +|+|+|++|+||+.+|++| |.+.+
T Consensus 225 ~vWfds~~~y~~~~g~~~~~~------~~~~-~p~di~~~G~D~~~fh~~~---~~a~~--------------------- 273 (500)
T 2d5b_A 225 FVWFDALLNYVSALDYPEGEA------YRTF-WPHAWHLIGKDILKPHAVF---WPTML--------------------- 273 (500)
T ss_dssp CHHHHHHTHHHHTTTTTTCHH------HHHH-GGGEEEEEEGGGHHHHHTH---HHHHH---------------------
T ss_pred EEccccchhhHHHcCCCCCch------HHHc-CCCeEEEEeechhhhHHHH---HHHHH---------------------
Confidence 999999866554 34554321 2234 5999999999999888653 43221
Q ss_pred cccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhH
Q 002411 649 EYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIE 728 (926)
Q Consensus 649 ~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~ 728 (926)
.+ .+..|++++++ ||||++++ |+|||||+||+|+|.++|++||+|++|||+++.++++++.+|+++.+.
T Consensus 274 ~~-~g~~~~~~v~~--~G~v~~~~--------G~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~ 342 (500)
T 2d5b_A 274 KA-AGIPMYRHLNV--GGFLLGPD--------GRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALR 342 (500)
T ss_dssp HH-HTCCCCSEEEE--ECCEECTT--------SSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHH
T ss_pred HH-cCCCCCcEEEE--CceEEeCC--------CCcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHH
Confidence 01 14467888887 79999855 999999999999999999999999999999987888999999999988
Q ss_pred HHHH---------HHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 002411 729 GVHR---------FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA 799 (926)
Q Consensus 729 ~~~r---------~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~ 799 (926)
+..+ ++.|+..++.... ++.... ..+.+++++++++++++.++|++|+|++|++.+++|++.
T Consensus 343 ~~~~~~l~~~l~n~~~r~~~~~~~~~-------~~~~~~--~~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~~ 413 (500)
T 2d5b_A 343 TRYEADLADDLGNLVQRTRAMLFRFA-------EGRIPE--PVAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVKA 413 (500)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHHS-------TTBCCC--CCCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCc--hhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7642 2333333321110 011111 113567788999999999999999999999999999987
Q ss_pred Hhcccc--------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 800 AYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 800 ~~~~~~--------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
.+.|.. ...++++.+++||+|||||+|||||++|+.+
T Consensus 414 ~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 414 LNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp HHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 776532 1125677889999999999999999999865
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=2.1e-72 Score=662.03 Aligned_cols=432 Identities=25% Similarity=0.402 Sum_probs=322.1
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++|||+.++|||||. |||||+++++++|+++||+||+||+|++++|||+||+||+.+|.+.|.+|+++++++++.|++
T Consensus 4 ~~~~~i~~p~py~ng~-lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 82 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDV-PHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKK 82 (497)
T ss_dssp SCEEEEEEEEEETTSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCc-cchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5789999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhcc-CccccCCCCeEEeecc
Q 002411 173 QLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVD-GVSERGGHPVIRKPMR 251 (926)
Q Consensus 173 ~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~-~~~~~~~~~~~~~~~~ 251 (926)
++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|+.+ |.|++||.+++.+...
T Consensus 83 ~~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 160 (497)
T 2csx_A 83 LWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEP 160 (497)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCE
T ss_pred HHHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecC
Confidence 9999999766 688999999999999999999999999999999999999999999999988 9999999999999999
Q ss_pred ccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCC
Q 002411 252 QWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEH 331 (926)
Q Consensus 252 ~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~ 331 (926)
||||++++|+++|++.+++. |.. +.|+
T Consensus 161 ~wf~~l~~~~~~l~~~~~~~--------------------------------------------~~~--------~~p~- 187 (497)
T 2csx_A 161 SYFFRLSKYQDKLLELYEKN--------------------------------------------PEF--------IQPD- 187 (497)
T ss_dssp EEEECTTSSHHHHHHHHHHC--------------------------------------------TTS--------BCSH-
T ss_pred ceEEEcHHHHHHHHHHHHhC--------------------------------------------CCe--------eCcH-
Confidence 99999999998877643210 000 0000
Q ss_pred ccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCCh
Q 002411 332 PLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDT 411 (926)
Q Consensus 332 ~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~ 411 (926)
T Consensus 188 -------------------------------------------------------------------------------- 187 (497)
T 2csx_A 188 -------------------------------------------------------------------------------- 187 (497)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeecC
Q 002411 412 RDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKLR 491 (926)
Q Consensus 412 ~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~ 491 (926)
.....+..|+.. +++
T Consensus 188 -------------------------------------------------------~~~~~~~~~l~~----------~~~ 202 (497)
T 2csx_A 188 -------------------------------------------------------YRRNEIISFVKQ----------GLK 202 (497)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHH----------CCC
T ss_pred -------------------------------------------------------HHHHHHHHHHhc----------CCc
Confidence 001122233321 368
Q ss_pred Ceeecc--ccc-cCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccCCC
Q 002411 492 DWLFAR--QRY-WGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRETST 568 (926)
Q Consensus 492 DW~ISR--QR~-WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~d~ 568 (926)
|||||| ||+ ||+|||+ ++ .++
T Consensus 203 Dw~isR~~~~~~WG~~iP~--~~------------------------------------------------------~~~ 226 (497)
T 2csx_A 203 DLSVTRPRSRVKWGIPVPF--DP------------------------------------------------------EHT 226 (497)
T ss_dssp CEECEEETTTCCSSEEETT--EE------------------------------------------------------EEE
T ss_pred cccccccCCCCCCceecCC--CC------------------------------------------------------Cce
Confidence 999999 885 9999995 10 135
Q ss_pred cCccccccchhhhhcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccc
Q 002411 569 MPQWAGSCWYYLRFMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLG 648 (926)
Q Consensus 569 mD~WfdSsw~~l~~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s 648 (926)
++|||||.+.|...+ +. +. .++| |+|+|++|+||+.+|.+ +|.+.+
T Consensus 227 i~vW~ds~~~~~s~~-~~-------~~-~~~~-p~di~~~G~D~~~~H~~---~~~a~l--------------------- 272 (497)
T 2csx_A 227 IYVWFDALFNYISAL-ED-------KV-EIYW-PADLHLVGKDILRFHTV---YWPAFL--------------------- 272 (497)
T ss_dssp ECSHHHHHTHHHHTT-TT-------TH-HHHC-SCSCEEEEGGGHHHHHT---HHHHHH---------------------
T ss_pred EEEecccchhhcccC-CC-------cc-hhhC-CceEEEeecchhHhHHH---HHHHHH---------------------
Confidence 789999987776543 11 11 1566 99999999999988865 344321
Q ss_pred cccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhH
Q 002411 649 EYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIE 728 (926)
Q Consensus 649 ~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~ 728 (926)
.+ .+..|+++++. ||||+++ |+|||||+||+|+|.+++++||+|++|||+++.++++++.+|+++.+.
T Consensus 273 ~~-~g~~~~~~~~~--~G~v~~~---------G~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~ 340 (497)
T 2csx_A 273 MS-LGYELPKKVFA--HGWWTVE---------GKKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAIL 340 (497)
T ss_dssp HH-HTCCCCSCEEE--ECCEESS---------SSBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHH
T ss_pred HH-cCCCCCcEEEE--CcEEEeC---------CceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHH
Confidence 11 14568888887 7999985 899999999999999999999999999999987888999999999988
Q ss_pred HHHH---------HHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 002411 729 GVHR---------FLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINA 799 (926)
Q Consensus 729 ~~~r---------~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~ 799 (926)
+..+ ++.|++.++.... ++... ...|.+++++++++++++.++|++|+|++|++.+++|++.
T Consensus 341 ~~~~~~l~~~l~n~~~R~~~~~~~~~-------~~~~~--~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~~ 411 (497)
T 2csx_A 341 NRINGELANEIGNLYSRVVNMAHKFL-------GGEVS--GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTSY 411 (497)
T ss_dssp HHHHHTCCCCCHHHHHHHHHHHHHHS-------TTCBC--CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCC--chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7653 4666666553211 01111 2346788999999999999999999999999999999987
Q ss_pred Hhcccc---------------------chHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 800 AYKWEK---------------------HPRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 800 ~~~~~~---------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
.+.|.. ...++|+.+++||+|||||+|||||+.|+.+
T Consensus 412 ~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 412 LNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp HHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 766521 0235678889999999999999999999865
No 13
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=5.2e-71 Score=654.81 Aligned_cols=442 Identities=23% Similarity=0.392 Sum_probs=343.7
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
++++||||.++|||||+ |||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|.+.|.+|+++++++++.|+
T Consensus 23 ~~~~~~i~~p~pypng~-lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~ 101 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGK-PHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFR 101 (536)
T ss_dssp -CCEEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCC-cCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46789999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccC----ccccCCCCeEE
Q 002411 172 TQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG----VSERGGHPVIR 247 (926)
Q Consensus 172 ~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~----~~~~~~~~~~~ 247 (926)
++|++|||++| .+++|+++.|.+.++++|.+|+++|+||++..+++||+.|++++++.|++++ .|.+||.+++.
T Consensus 102 ~~l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~ 179 (536)
T 4dlp_A 102 RMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEW 179 (536)
T ss_dssp HHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEE
T ss_pred HHHHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceE
Confidence 99999999888 8889999999999999999999999999999999999999999999999753 58899999999
Q ss_pred eeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEE
Q 002411 248 KPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVV 327 (926)
Q Consensus 248 ~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v 327 (926)
+..+||||++++|++.|++++++.. . .+
T Consensus 180 ~~~~~~f~~l~~~~~~l~~~~~~~~-----------------------------~-----------------------~i 207 (536)
T 4dlp_A 180 VEEESYFFRLSAYQDKLLDLYENNP-----------------------------G-----------------------FI 207 (536)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHHCT-----------------------------T-----------------------SE
T ss_pred EeccceEEecHHHHHHHHHHHHhCC-----------------------------C-----------------------cc
Confidence 9999999999999988776532100 0 00
Q ss_pred CCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecC
Q 002411 328 APEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVP 407 (926)
Q Consensus 328 ~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~P 407 (926)
.|
T Consensus 208 ~P------------------------------------------------------------------------------ 209 (536)
T 4dlp_A 208 MP------------------------------------------------------------------------------ 209 (536)
T ss_dssp ES------------------------------------------------------------------------------
T ss_pred Cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEe
Q 002411 408 AHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVN 487 (926)
Q Consensus 408 ah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~ 487 (926)
......+..|+.+
T Consensus 210 ----------------------------------------------------------~~~~~~~~~~l~~--------- 222 (536)
T 4dlp_A 210 ----------------------------------------------------------AERRNEIVSFVKS--------- 222 (536)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHT---------
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhc---------
Confidence 0012233445532
Q ss_pred eecCCeeecccc-ccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccccccceecccCCCCCCCcccC
Q 002411 488 YKLRDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSKAVSWVQTTEHSSGKPARRET 566 (926)
Q Consensus 488 ~~l~DW~ISRQR-~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~~~~w~~~~~~~~g~~~~re~ 566 (926)
.++|||||||| +||+|||. + +.
T Consensus 223 -~l~D~~ISR~~~~WGipiP~----~----------------------------------------------------~~ 245 (536)
T 4dlp_A 223 -GLKDLSISRTTFDWGIPVPG----D----------------------------------------------------EK 245 (536)
T ss_dssp -CCCCEECEEC--CCSCBCTT----C----------------------------------------------------TT
T ss_pred -CCCccCCccCCCcCCeeCCC----C----------------------------------------------------CC
Confidence 36899999997 59999994 1 12
Q ss_pred CCcCccccccchhhh-hcCCCCChhhcchhhhhcCCCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCccc
Q 002411 567 STMPQWAGSCWYYLR-FMDPKNSKELVDKTKERYWSPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTD 645 (926)
Q Consensus 567 d~mD~WfdSsw~~l~-~~~p~~~~~~~~~~~~~~w~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~ 645 (926)
+||||||||.+.|+. .++|.+.. .+ +.|+|+|+|+.|+||+.+|.+| |.+++.
T Consensus 246 ~v~yvWfda~~~y~s~~~~~~~~~-----~~-~~~~p~dv~~~G~D~~~fh~~~---~~a~l~----------------- 299 (536)
T 4dlp_A 246 HVMYVWVDALTNYITALGYPDTTD-----ER-WAYWPANAHIIGKDISRFHAVY---WPAFLM----------------- 299 (536)
T ss_dssp SEECHHHHHHHHHHHTTTTTCTTS-----GG-GGGCSCSEEEEEGGGHHHHHTH---HHHHHH-----------------
T ss_pred CceEEeeCCcHHHHHhcCCCCCch-----HH-HhhCCcceEEeechHHHHHHHH---HHHHHH-----------------
Confidence 488999999865544 45665432 12 3345999999999999888654 432211
Q ss_pred ccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCch
Q 002411 646 TLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTS 725 (926)
Q Consensus 646 ~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~ 725 (926)
+ .+..|+++|++ ||||+.+ |+|||||+||+|+|.++|++||+|++|||+++..+..++.+|+++
T Consensus 300 --a---~g~~~~~~v~~--hg~v~~~---------G~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~ 363 (536)
T 4dlp_A 300 --S---AQLPLPKRVFA--HGFLFNR---------GEKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHE 363 (536)
T ss_dssp --H---TTCCCCSCEEE--ECCEEC---------------------CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHH
T ss_pred --H---CCCCCCcEEEe--eeeEeeC---------CceecccCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHH
Confidence 0 13457788887 7999874 899999999999999999999999999999987888899999998
Q ss_pred hhHHHH---------HHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002411 726 GIEGVH---------RFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEF 796 (926)
Q Consensus 726 ~i~~~~---------r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f 796 (926)
.+.+.. ++++|+.+++..+. . + ..+. .......|+++++++++++++++++|++|+|++|++.+++|
T Consensus 364 ~~~~~~n~~l~~~l~N~~~R~~~~~~~~~-~-~-~~p~-~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l 439 (536)
T 4dlp_A 364 AIVNRTNADLANDLGNLAQRSLSMIAKNC-E-G-KVPQ-PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAV 439 (536)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHHHHHHS-T-T-BCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-C-CCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 887643 34445555553321 1 1 1110 01123457889999999999999999999999999999999
Q ss_pred HHHHhccccc--------------------hHHHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 002411 797 INAAYKWEKH--------------------PRKIIEPFILLLAPYAPHMSEELWFRLGHS 836 (926)
Q Consensus 797 ~~~~~~~~~~--------------------~~~~l~~l~~lLaP~~P~~aEelw~~L~~~ 836 (926)
++..|.|... ..++|+.+++||+|||||+|||||++|+.+
T Consensus 440 ~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 440 VAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp HHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 9877665310 125678889999999999999999999864
No 14
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=2.4e-71 Score=659.42 Aligned_cols=457 Identities=21% Similarity=0.322 Sum_probs=356.2
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCc
Q 002411 80 NRTFRTPDEIDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHP 159 (926)
Q Consensus 80 ~~~f~~~~~~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~ 159 (926)
.++|.+.. ..++++|||+.++|||||+ |||||+++++++|+++||+||+||+|++++|+|+||++|+.+|.+.|.+|
T Consensus 14 ~~~~~~~~--~~~~~~~~i~~~~py~ng~-lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p 90 (564)
T 3kfl_A 14 AQTQGPGS--MKKQKVFFATTPIYYVNAS-PHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSP 90 (564)
T ss_dssp ------------CCCCEEEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCH
T ss_pred hhhcCCcc--ccCCCCEEEeCCCCCCCCC-CCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCH
Confidence 34566542 3456889999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccC---
Q 002411 160 KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDG--- 236 (926)
Q Consensus 160 ~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~--- 236 (926)
+++++++++.|++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|++++++.|++++
T Consensus 91 ~~~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~ 168 (564)
T 3kfl_A 91 MDFTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDR 168 (564)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCC
Confidence 99999999999999999999998 6889999999999999999999999999999999999999999999999754
Q ss_pred ---cc---ccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecCCCCccceeEE
Q 002411 237 ---VS---ERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDSDGQERDIKIT 310 (926)
Q Consensus 237 ---~~---~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~~~~~~~~~i~ 310 (926)
.| ..||.+++.+..+||||++++|+++|++++++.
T Consensus 169 ~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~--------------------------------------- 209 (564)
T 3kfl_A 169 DGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH--------------------------------------- 209 (564)
T ss_dssp TSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHC---------------------------------------
T ss_pred CCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhC---------------------------------------
Confidence 23 247999999999999999999999887653210
Q ss_pred EeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEe
Q 002411 311 VYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWV 390 (926)
Q Consensus 311 i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~ 390 (926)
|+. ..|
T Consensus 210 ------------------~~~----------------------------------------------i~P---------- 215 (564)
T 3kfl_A 210 ------------------PNC----------------------------------------------IVP---------- 215 (564)
T ss_dssp ------------------TTS----------------------------------------------EES----------
T ss_pred ------------------CCc----------------------------------------------cCC----------
Confidence 000 000
Q ss_pred cCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHH
Q 002411 391 ADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATS 470 (926)
Q Consensus 391 ~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~ 470 (926)
...+.
T Consensus 216 ---------------------------------------------------------------------------~~~~~ 220 (564)
T 3kfl_A 216 ---------------------------------------------------------------------------EFRRR 220 (564)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 01223
Q ss_pred HHHHHHHHcCCCceeEeeecCCeeecc----ccccCCccCceEeCCCCcccccCccccCccCCcccccCCCCCCCCCccc
Q 002411 471 KVIEWAEKTGNGKKKVNYKLRDWLFAR----QRYWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGTGEPPLSK 546 (926)
Q Consensus 471 ~i~~~l~~~g~~~~~~~~~l~DW~ISR----QR~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~~~~~l~~ 546 (926)
.+.+|+.+ .++|||||| |++||+|||. +
T Consensus 221 ~~~~wl~~----------gl~D~~ISR~~~~~~~WGipiP~----~---------------------------------- 252 (564)
T 3kfl_A 221 EVIKTVEK----------GLFDLSISRKRESVMNWSIPVPG----D---------------------------------- 252 (564)
T ss_dssp HHHHHHHH----------CCCCEECEEEGGGGTTCSCEETT----E----------------------------------
T ss_pred HHHHHHhC----------CCCCccccCcCCCCCCCCeecCC----C----------------------------------
Confidence 44556643 379999999 8999999993 1
Q ss_pred cccceecccCCCCCCCcccCCCcCccccccchhhh-hcC-CCCChhh-cchhh--hhcCCCceeeecccchhhhhHHHhh
Q 002411 547 AVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLR-FMD-PKNSKEL-VDKTK--ERYWSPVDVYVGGAEHAVLHLLYAR 621 (926)
Q Consensus 547 ~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~-~~~-p~~~~~~-~~~~~--~~~w~PvDl~v~G~D~~~~HLly~r 621 (926)
+.+||||||||++.|+. ..+ |...... ....+ .++ +|+|+|+.|+||+.+|.+|
T Consensus 253 ------------------~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~-wp~dv~~~GkDii~FH~~~-- 311 (564)
T 3kfl_A 253 ------------------ERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNR-WPADVHVVGKDILKFHAIY-- 311 (564)
T ss_dssp ------------------EEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTC-CSCSEEEEEGGGHHHHHTH--
T ss_pred ------------------CCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhc-CccceEEEeecccchHHHH--
Confidence 12488999999866554 333 4332210 00012 244 5999999999999888654
Q ss_pred hhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCccCcchhhhhc
Q 002411 622 FWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTEY 701 (926)
Q Consensus 622 fw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~y 701 (926)
|.+++. + .+..|+++|++ |||+..+ |+|||||+||+|+|.+++++|
T Consensus 312 -wpa~L~-------------------a---~g~~~~~~v~~--hg~v~~~---------G~KMSKS~GNvV~p~d~i~~~ 357 (564)
T 3kfl_A 312 -WPAFLM-------------------S---AELPLPERLVS--HGWWTKD---------HKKISKSLGNAFDPVEKAKEF 357 (564)
T ss_dssp -HHHHHH-------------------H---TTCCCCSCEEE--ECCEEET---------TEECCTTTTCCCCHHHHHHHH
T ss_pred -HHHHHH-------------------h---CCCCCCcEEEE--cccEeeC---------CccccccCCCCCCHHHHHHHc
Confidence 543211 0 14567888987 7998554 999999999999999999999
Q ss_pred CchhhhHHhhhcCCcCCCCcCCchhhHHHHH--HHHHHHHHH---hcCCCCCCCCCCCccc---CCCCchHHHHHHHHHH
Q 002411 702 GADSLRLYEMFMGPFRDSKTWNTSGIEGVHR--FLGRMWRLI---VGSSLPDGTFKGGTVV---NDEEPTLEQLCTLHKC 773 (926)
Q Consensus 702 GaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r--~L~r~~~~~---~~~~~~~~~~~~~~~~---~~~~~d~~~l~~l~~~ 773 (926)
|+|++|||+++..+..++.+|+++.+.+..+ ++++++|++ ..... .+ .+..+ .....|.+++++++++
T Consensus 358 G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~---~~-~g~~p~~~~~~~~d~~ll~~l~~~ 433 (564)
T 3kfl_A 358 GIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKI---NV-NGMWPEPAEYSESDKTLIASLNNL 433 (564)
T ss_dssp CHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTT---ST-TSBCCCCCCCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-CCcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999878889999999998887643 444444433 22111 01 11111 1234578899999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcccc--------------------chHHHHHHHHHHhhchhhHHHHHHHHHc
Q 002411 774 IAKVTEEIEGTRFNTGISAMMEFINAAYKWEK--------------------HPRKIIEPFILLLAPYAPHMSEELWFRL 833 (926)
Q Consensus 774 i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~--------------------~~~~~l~~l~~lLaP~~P~~aEelw~~L 833 (926)
+++++++|++|+|++|++.+++|++..|+|.. ...++++.+++||+|||||+|||||++|
T Consensus 434 ~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~L 513 (564)
T 3kfl_A 434 AGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDAL 513 (564)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHc
Confidence 99999999999999999999999988776531 1135788899999999999999999999
Q ss_pred CCC
Q 002411 834 GHS 836 (926)
Q Consensus 834 ~~~ 836 (926)
+.+
T Consensus 514 g~~ 516 (564)
T 3kfl_A 514 GVP 516 (564)
T ss_dssp TCC
T ss_pred CCC
Confidence 864
No 15
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.4e-71 Score=658.71 Aligned_cols=455 Identities=20% Similarity=0.268 Sum_probs=354.2
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHH
Q 002411 90 DTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINR 169 (926)
Q Consensus 90 ~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 169 (926)
+.++++|||+++||||||+ |||||+++++++|+++||+||+||+|++++|||+||+||+.+|.+.|++++++++++.+.
T Consensus 14 ~~~~~~~~v~~~~py~ng~-lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~ 92 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGS-IHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQE 92 (560)
T ss_dssp ---CCEEEEEECCCBTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEeCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5678999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhh----------------
Q 002411 170 FRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV---------------- 233 (926)
Q Consensus 170 ~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev---------------- 233 (926)
|+++|++|||++| +++.|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|++.+|
T Consensus 93 ~~~~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ 170 (560)
T 3h99_A 93 HQTDFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDN 170 (560)
T ss_dssp HHHHHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTB
T ss_pred HHHHHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccch
Confidence 9999999999766 7899999999999999999999999999999999999999998888665
Q ss_pred -------------ccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCCcHHHHHHHHhhhccCCCceEEEEeecC
Q 002411 234 -------------VDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDWPESVKEMQRNWIGRSEGAEMDFRVLDS 300 (926)
Q Consensus 234 -------------~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~p~~~~~~~~~~i~~s~~~~v~f~~~~~ 300 (926)
+++.|.+||.+++.+..+||||++++|++.|.+++++..||+.+++.
T Consensus 171 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~-------------------- 230 (560)
T 3h99_A 171 CEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK-------------------- 230 (560)
T ss_dssp CTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHH--------------------
T ss_pred hhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHH--------------------
Confidence 34456666778999999999999999999887765443344333222
Q ss_pred CCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhhccccccceEEecC
Q 002411 301 DGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNP 380 (926)
Q Consensus 301 ~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P 380 (926)
T Consensus 231 -------------------------------------------------------------------------------- 230 (560)
T 3h99_A 231 -------------------------------------------------------------------------------- 230 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCceEeccCCccccccc
Q 002411 381 ASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDI 460 (926)
Q Consensus 381 ~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~ 460 (926)
T Consensus 231 -------------------------------------------------------------------------------- 230 (560)
T 3h99_A 231 -------------------------------------------------------------------------------- 230 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCceeEeeecCCeeecccc-ccCCccCceEeCCCCcccccCccccCccCCcccccCCCCC
Q 002411 461 NGLSCQEATSKVIEWAEKTGNGKKKVNYKLRDWLFARQR-YWGEPIPVVFLDGTGETVPLHEAELPLTLPELDDFTPTGT 539 (926)
Q Consensus 461 ~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l~DW~ISRQR-~WG~PIPv~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~g~ 539 (926)
+..|+.+ +++|||||||+ +||+|||. ++
T Consensus 231 -----------~~~~l~~----------~l~D~~IsR~~~~WG~~iP~----~~-------------------------- 259 (560)
T 3h99_A 231 -----------MQEWFES----------GLQQWDISRDAPYFGFEIPN----AP-------------------------- 259 (560)
T ss_dssp -----------HHHHHHH----------CCCCEECEEESSCSSCBCTT----CT--------------------------
T ss_pred -----------HHHHHhc----------CCCCCCccccCCcCCeeCCC----CC--------------------------
Confidence 2233332 26899999999 89999994 11
Q ss_pred CCCCccccccceecccCCCCCCCcccCCCcCccccccchhhhhc--CCCCChhhcchhhhhcCCCce-----eeecccch
Q 002411 540 GEPPLSKAVSWVQTTEHSSGKPARRETSTMPQWAGSCWYYLRFM--DPKNSKELVDKTKERYWSPVD-----VYVGGAEH 612 (926)
Q Consensus 540 ~~~~l~~~~~w~~~~~~~~g~~~~re~d~mD~WfdSsw~~l~~~--~p~~~~~~~~~~~~~~w~PvD-----l~v~G~D~ 612 (926)
..|++||||+...|+... ++..... ...+..+ +|.| +|+.|+||
T Consensus 260 --------------------------~~viyvW~da~~~y~s~~~~~~~~~~~--~~~~~~~-wp~~~~~~~~~~~G~D~ 310 (560)
T 3h99_A 260 --------------------------GKYFYVWLDAPIGLMGSFKNLCDKRGD--SVSFDEY-WKKDSTAELYHFIGKDI 310 (560)
T ss_dssp --------------------------TEEECHHHHHHHHHHHHHHHHHHHHTC--SSHHHHH-HBTTCCSEEEEEEEGGG
T ss_pred --------------------------CceEEeCcccchhHHHHHHHHhhccCC--hhhHHHh-CcCCCCceeEEEecccc
Confidence 127889999876554321 1110000 0123344 4999 99999999
Q ss_pred hhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccccccccccCCCcc
Q 002411 613 AVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVV 692 (926)
Q Consensus 613 ~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv 692 (926)
+.+|.+ ||.+++.. +....| ++|++ ||||+++ |+|||||+||+|
T Consensus 311 ~~fh~~---~~~a~l~~---------------------~g~~~p-~~v~~--hg~v~~~---------G~KMSKS~GNvv 354 (560)
T 3h99_A 311 VYFLSL---FWPAMLEG---------------------SNFRKP-SNLFV--HGYVTVN---------GAKMSKSRGTFI 354 (560)
T ss_dssp HHHHHT---HHHHHHHH---------------------TTBCCC-SEEEE--ECCEEET---------TEECCTTTTCCC
T ss_pred chhHHH---HHHHHHHh---------------------CCCCCC-cEEEE--EeEEEeC---------CeeccccCCCcC
Confidence 988854 55543211 122456 78887 7999985 899999999999
Q ss_pred CcchhhhhcCchhhhHHhhhcCCcC-CCCcCCchhhHHH--HHHHHHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHH
Q 002411 693 NPDDVVTEYGADSLRLYEMFMGPFR-DSKTWNTSGIEGV--HRFLGRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCT 769 (926)
Q Consensus 693 ~p~eii~~yGaD~lRl~ll~~~~~~-~~~~~~~~~i~~~--~r~L~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 769 (926)
+|.++|++||+|++|||+++.++.. ++.+|+++.+... .++++++|+++........+..++..+ ....|.+++++
T Consensus 355 ~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~-~~~~d~~ll~~ 433 (560)
T 3h99_A 355 KASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLA-SELADPQLYKT 433 (560)
T ss_dssp BHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCC-SSCSCHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CccccHHHHHH
Confidence 9999999999999999999888766 8889998887653 234444444331100000000011111 12457899999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc----------------------chHHHHHHHHHHhhchhhHHHH
Q 002411 770 LHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK----------------------HPRKIIEPFILLLAPYAPHMSE 827 (926)
Q Consensus 770 l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~----------------------~~~~~l~~l~~lLaP~~P~~aE 827 (926)
+++++++++++|++|+|++|++.+++|++..|+|.. ...++|+.+++||+|||||+||
T Consensus 434 l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~ae 513 (560)
T 3h99_A 434 FTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTE 513 (560)
T ss_dssp HHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 999999999999999999999999999987776521 0136788999999999999999
Q ss_pred HHHHHcCCCCCccccCCCCCCc
Q 002411 828 ELWFRLGHSNSLAYESFPKANP 849 (926)
Q Consensus 828 elw~~L~~~~sv~~~~WP~~de 849 (926)
|||++|+.+ +.||..++
T Consensus 514 ei~~~L~~~-----~~w~~~~~ 530 (560)
T 3h99_A 514 RAEAFLNTE-----LTWDGIQQ 530 (560)
T ss_dssp HHHHHHTSC-----CCTGGGGS
T ss_pred HHHHHcCCC-----CChhhhhc
Confidence 999999854 78987654
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.2e-43 Score=405.77 Aligned_cols=118 Identities=22% Similarity=0.193 Sum_probs=108.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 92 SKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 92 ~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
++.++|+| .|+|||. +||||+|+++++|+++||+|++||+|.+++|+|+||.+|+.+|.+.|.+|+++++++++.|+
T Consensus 38 ~~v~~y~~--gPt~yg~-~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~ 114 (414)
T 3c8z_A 38 PTATMYVC--GITPYDA-THLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFR 114 (414)
T ss_dssp SEEEEEEC--CCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCceEEeC--CCcCCCC-cCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44678887 7889998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcc-ccccCccccCChhHHHHHHHHHHHHhhCCcEEEecc
Q 002411 172 TQLKSLGFS-YDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEV 216 (926)
Q Consensus 172 ~~l~~lgi~-~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~ 216 (926)
+++++|||+ +| .+..|++ |.+.++++|.+|+++|++|++..
T Consensus 115 ~~~~~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~ 156 (414)
T 3c8z_A 115 EDMAALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVED 156 (414)
T ss_dssp HHHHHTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSC
T ss_pred HHHHHcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccC
Confidence 999999998 77 4556654 88899999999999999999754
No 17
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=4.9e-43 Score=399.88 Aligned_cols=129 Identities=22% Similarity=0.168 Sum_probs=120.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.++.++|+| .|+|+|. +||||+|+++++|+++||+|++||+|.|++|+|+||.||+.+|.+.|.+|+++++++++.|
T Consensus 23 ~~~v~~Yvc--GPtvy~~-~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f 99 (462)
T 3tqo_A 23 SGKVKLYVC--GMTVYDY-MHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQIL 99 (462)
T ss_dssp TTEEEEEEC--CCBTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeC--CCcCCCC-CchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455677776 7899998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEe-ccCccccCCCC
Q 002411 171 RTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPALG 225 (926)
Q Consensus 171 ~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~-~~~v~wc~~~~ 225 (926)
++++++|||+.||..+..| +|...++++|.+|+++|++|++ ...|+||+.|-
T Consensus 100 ~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 100 HEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp HHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred HHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 9999999999998766655 8999999999999999999999 68999999874
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=6.8e-43 Score=399.91 Aligned_cols=126 Identities=18% Similarity=0.130 Sum_probs=102.6
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccc----------cccChHHHHHHHHhCCCchHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGW----------DAFGLPAEQYAIETGTHPKIT 162 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~----------D~~Glpie~~a~~~g~~~~~~ 162 (926)
+.++|+| +|+++|. +||||+++++++|+++||+||+||+|.|++|+ |+||.||+.+|.+.|.+|+++
T Consensus 42 ~v~~Yvc--gPTvYg~-~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~ 118 (501)
T 3sp1_A 42 NVKVYAC--GPTVYNY-AHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEI 118 (501)
T ss_dssp CEEEEEC--CCBCSSC-CCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHH
T ss_pred cceEEeC--CCcCCCC-cchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHH
Confidence 5678887 6888898 99999999999999999999999999999654 777999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhCCcEEEeccCccccCCC
Q 002411 163 TLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL 224 (926)
Q Consensus 163 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~~~~v~wc~~~ 224 (926)
++++++.|++++++|||+.||. .+.+++|...++++|.+|+++|+||++...|+||+.+
T Consensus 119 a~~~~~~f~~d~~~Lgi~~d~~---~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 119 SEFFTEAFFNDCRKLNIVYPDK---VLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSE---EEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHHHHHHHcCCCCCCc---ccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 9999999999999999999974 3457899999999999999999999999999999876
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=3.2e-39 Score=372.94 Aligned_cols=127 Identities=21% Similarity=0.159 Sum_probs=115.2
Q ss_pred CCCCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHH
Q 002411 91 TSKPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRF 170 (926)
Q Consensus 91 ~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~ 170 (926)
.++.++|+| .|+|+|. +||||+|+++++|+++||+|++||+|.++.|+|++|.+|..+|.+.|.+++++++++++.|
T Consensus 20 ~~~v~~yv~--gPt~y~~-~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f 96 (461)
T 1li5_A 20 AGEVGMYVC--GITVYDL-CHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEM 96 (461)
T ss_dssp TTEEEEEEC--CCBSSSC-CBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCeeEEEc--CCcCCCC-CcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455678887 5777798 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccc-cccCccccCChhHHHHHHHHHHHHhhCCcEEEe-ccCccccCCC
Q 002411 171 RTQLKSLGFSY-DWNREISTIEPAYYKWTQWIFLQLLKRGLAYQA-EVPVNWCPAL 224 (926)
Q Consensus 171 ~~~l~~lgi~~-Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~~-~~~v~wc~~~ 224 (926)
++++++|||.+ | .+.+|+ +|.+.+++++.+|.++|++|.+ ...|+||..|
T Consensus 97 ~~~~~~LgI~~~d--~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 97 HKDFDALNILRPD--MEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHHHHTTCCCCS--BCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred HHHHHHcCCCCCc--cccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 99999999997 5 334444 4889999999999999999999 8899999876
No 20
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=4.3e-38 Score=326.11 Aligned_cols=197 Identities=49% Similarity=0.840 Sum_probs=157.2
Q ss_pred ccCCCceEEEEeecCCCC----------------ccceeEEEeecCCccccCCcEEEECCCCccchhcccccch------
Q 002411 286 GRSEGAEMDFRVLDSDGQ----------------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQS------ 343 (926)
Q Consensus 286 ~~s~~~~v~f~~~~~~~~----------------~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~------ 343 (926)
|||+|+.|+|++.+.+.. +.+.+++||||||||||||+||||+|+|+|+..+...+..
T Consensus 1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~ 80 (219)
T 3o0a_A 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACY 80 (219)
T ss_dssp ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCH
T ss_pred CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhH
Confidence 789999999999643210 0126899999999999999999999999999877654333
Q ss_pred hHHHHHHHHHhccchhhHhHhhhhccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCc
Q 002411 344 QNIEEYKNLASRKSDLERTELQKEKTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDIS 423 (926)
Q Consensus 344 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lp 423 (926)
..++.+++.+.+....++... ..+.|.|+|.++.||++++.+|||.+|||++++|||+||+|||||++||++|++||||
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~-~~~~G~l~G~~~~~Pl~~~~iPI~~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lp 159 (219)
T 3o0a_A 81 SDVENFVEKMKKMSTRERTME-EDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLP 159 (219)
T ss_dssp HHHHHHHHHHHTCCHHHHHSC-SSCCEEEEEEEEECTTTCCEEEEEEETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccceeE-EEeeeEEcCCEEECCCCCCeeeEEEecccccCCCCCeEEECCCCCHHHHHHHHHcCCC
Confidence 445677776666665555444 4566779999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCCcccccccccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEeeec
Q 002411 424 IHSVVMPDDESSSQSEKAYTGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNYKL 490 (926)
Q Consensus 424 i~~vv~~~~~~~~~~~~~y~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~~l 490 (926)
++++|++.+ ......++|+++|+++++. .|+||.+++|+++|+++|++.|.+.+.++|+|
T Consensus 160 i~~vi~~~~-~~~~~~g~ft~~g~~~~~~------~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~yrL 219 (219)
T 3o0a_A 160 IKVVVKPEG-AWDFEKGAYEGKGTLVNSD------GFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219 (219)
T ss_dssp CCCCEECSS-CCCTTTCCCCSCCEECSCG------GGTTCBHHHHHHHHHHHHHHTTSEEEC-----
T ss_pred ceeeeCCcc-ccccccccccccceEecCC------CCCCCCHHHHHHHHHHHHHHCCCeeeeeeecC
Confidence 999998753 1122356899999998764 49999999999999999999999999999875
No 21
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=4.7e-36 Score=307.28 Aligned_cols=185 Identities=41% Similarity=0.673 Sum_probs=154.8
Q ss_pred CCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhh
Q 002411 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (926)
Q Consensus 288 s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 367 (926)
.+|++|+|++.+ .+.+|+||||||||||||+||||+|+++|+..... +...+++|++.+...+..+...+.+.
T Consensus 10 ~~g~~v~F~~~~-----~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (196)
T 2ajg_A 10 GEGVEITFNVND-----YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAE--NNPELAAFIDECRNTKVAEAEMATME 82 (196)
T ss_dssp -CEEEEEEEBTT-----CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHT--TCHHHHHHHHHHHHCCCCGGGGGGSC
T ss_pred CceEEEEEEeCC-----CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcC--CHHHHHHHHHHhhcccccceEEEeee
Confidence 478999999942 24689999999999999999999999999877532 34456778776665554455555567
Q ss_pred ccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcc-cccccccCc
Q 002411 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQ-SEKAYTGEG 446 (926)
Q Consensus 368 ~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~-~~~~y~~~g 446 (926)
++|.|+|+++.||++++.+|||.++||++++|||+||+|||||++||++|++||||++++|++.++...+ ..++|+++|
T Consensus 83 k~g~l~G~~~~~P~~~~~ipV~~ad~V~~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g 162 (196)
T 2ajg_A 83 KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKG 162 (196)
T ss_dssp CCEEEEEEEEECTTTCCEEEEEEETTCCSSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCC
T ss_pred eCCEEcCCEEECCCCCCeeEEEEeCCCccCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCc
Confidence 8889999999999999999999999999999999999999999999999999999999999854332212 457888889
Q ss_pred eEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCcee
Q 002411 447 LIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKK 485 (926)
Q Consensus 447 ~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~ 485 (926)
.++|+. +|+|+.+++|++.|+++|++.|.+.++
T Consensus 163 ~~~ns~------~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 163 VLFNSG------EFNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp CBCSSG------GGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred eEecCc------ccCCeEHHHHHHHHHHHHHHCCCceee
Confidence 888765 499999999999999999999988654
No 22
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=1.1e-33 Score=287.19 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=137.8
Q ss_pred cCCCceEEEEeecCCC-CccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhh
Q 002411 287 RSEGAEMDFRVLDSDG-QERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQ 365 (926)
Q Consensus 287 ~s~~~~v~f~~~~~~~-~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 365 (926)
+|+|++|+|++.+... ...+.+++||||||||||||+||||||+++|+......+.....+++++..... ++ ..+.
T Consensus 2 ~S~~i~V~F~~~~~~~~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~-~~--~~~~ 78 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE-GT--PVLK 78 (186)
T ss_dssp -CCEEEEEEEBSCGGGGTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT-TS--CEEE
T ss_pred ccceEEEEEEeCCCccccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc-Cc--EEEE
Confidence 4899999999954210 001478999999999999999999999999998775433322224444433322 11 1123
Q ss_pred hhccccccceEEecCCC---CCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCccccccc
Q 002411 366 KEKTGVFSGCYARNPAS---GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAY 442 (926)
Q Consensus 366 ~~~~~~l~g~~~~~P~~---~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y 442 (926)
+.+|..|.|+++.||++ ++.+|||.++||++++|||+||+|||||++||++|++||||++++|+++
T Consensus 79 ~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~~----------- 147 (186)
T 1wny_A 79 TFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEE----------- 147 (186)
T ss_dssp EEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCCSSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCTT-----------
T ss_pred EEEcccccCcEEECCccccCCCEEEEEEeCcCcCCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCCC-----------
Confidence 34445699999999997 8999999999999999999999999999999999999999999999764
Q ss_pred ccCceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 002411 443 TGEGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (926)
Q Consensus 443 ~~~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~ 488 (926)
|.+.++ . |+|+.+.+|++.|+++|++.|.+.+..+|
T Consensus 148 ---G~~~~~------~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~ 183 (186)
T 1wny_A 148 ---GKLLVE------P-FKGLYFREANRAILRDLRGRGLLFKEESY 183 (186)
T ss_dssp ---SBBCST------T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC-
T ss_pred ---ccCccC------C-CCCcCHHHHHHHHHHHHHHCCCeecceeE
Confidence 334322 2 88999999999999999999988766554
No 23
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.97 E-value=3.5e-31 Score=257.91 Aligned_cols=143 Identities=28% Similarity=0.381 Sum_probs=122.6
Q ss_pred CCCceEEEEeecCCCCccceeEEEeecCCccccCCcEEEECCCCccchhcccccchhHHHHHHHHHhccchhhHhHhhhh
Q 002411 288 SEGAEMDFRVLDSDGQERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTTQSQNIEEYKNLASRKSDLERTELQKE 367 (926)
Q Consensus 288 s~~~~v~f~~~~~~~~~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 367 (926)
+..++|+|++ +. +.+++|||||||||+||+||||||+++..
T Consensus 4 ~~~~~v~F~~-~~-----~~~l~i~TTrP~Tl~g~~aiav~P~~~~~--------------------------------- 44 (147)
T 1wka_A 4 GKLYTLRYEV-EG-----GGFIEIATVRPETVFADQAIAVHPEDERY--------------------------------- 44 (147)
T ss_dssp CEEEEEEEEB-TT-----SCEEEEEESCGGGGGGCCEEEECTTCTTT---------------------------------
T ss_pred ceEEEEEEEC-CC-----CcEEEEEECCceecccceEEEECCCCchH---------------------------------
Confidence 4567999998 32 36899999999999999999999998631
Q ss_pred ccccccceEEecCCCCCcccEEecCcccCCCCCCceeecCCCChhhHHHHHHcCCceeeeecCCCCCCcccccccccCce
Q 002411 368 KTGVFSGCYARNPASGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALKFDISIHSVVMPDDESSSQSEKAYTGEGL 447 (926)
Q Consensus 368 ~~~~l~g~~~~~P~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k~~Lpi~~vv~~~~~~~~~~~~~y~~~g~ 447 (926)
..|.|+++.||++++.+||+.++||++++|||+||+|||||++||++|++||||++++|+++ |+
T Consensus 45 --~~l~g~~~~~P~~~~~ipI~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~~--------------G~ 108 (147)
T 1wka_A 45 --RHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE--------------GR 108 (147)
T ss_dssp --GGGTTCEEECTTSSCEEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCTT--------------SB
T ss_pred --HHhcCCEEECCCCCCeeEEEEeCccccCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECCC--------------CE
Confidence 13689999999999999999999999999999999999999999999999999999999864 44
Q ss_pred EeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 002411 448 IVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (926)
Q Consensus 448 ~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~ 488 (926)
+ ++.. ....|+|+.+.+|+++|+++|++.|.+.+..+|
T Consensus 109 ~-~~~~--~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 109 M-EGER--VPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp B-CSTT--SCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred E-cCCC--cccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 5 3221 001389999999999999999999998877655
No 24
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=272.23 Aligned_cols=183 Identities=18% Similarity=0.284 Sum_probs=129.9
Q ss_pred eEEEEeecCCCC------ccceeEEEeecCCccccCCcEEEECCCCccchhccc-ccc----hhHHH--HHHHHHhccch
Q 002411 292 EMDFRVLDSDGQ------ERDIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVS-TTQ----SQNIE--EYKNLASRKSD 358 (926)
Q Consensus 292 ~v~f~~~~~~~~------~~~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~-~~~----~~~~~--~y~~~~~~~~~ 358 (926)
-|+|++.+.... ..+.+|+||||||||||||+||||||+|+|+..... .+. ....+ .|+....+..+
T Consensus 9 ~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~ 88 (252)
T 2wfd_A 9 LLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNGV 88 (252)
T ss_dssp EEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTTC
T ss_pred EEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCcc
Confidence 478887542110 135899999999999999999999999999875541 110 01111 11111111111
Q ss_pred hhHhHhhhhccccccceEEecCCCC-CcccEEecCcccCCCCCCceeecCCCChhhHH----------HHHHcCCc----
Q 002411 359 LERTELQKEKTGVFSGCYARNPASG-EAIPIWVADYVLGSYGTGAIMAVPAHDTRDHE----------FALKFDIS---- 423 (926)
Q Consensus 359 ~~~~~~~~~~~~~l~g~~~~~P~~~-~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~----------~~~k~~Lp---- 423 (926)
++ .+.+.+|..|+|+++.||+++ +.+|||+++||++++|||+||+|||||++||+ ||++||||
T Consensus 89 ~~--~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~ 166 (252)
T 2wfd_A 89 VP--VVKELMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMV 166 (252)
T ss_dssp CC--EEEECCHHHHTTCEEECSSCSSSCEEEEECSCCCSSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGT
T ss_pred cE--EEEEEEcccccCCEEEcCCCCCceeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhc
Confidence 11 122334445999999999999 58999999999999999999999999999999 68999998
Q ss_pred ----eeeeecCCC-CCC--------------cc-------ccccccc---CceEeccCCcccccccCCCCHHHHHHHHHH
Q 002411 424 ----IHSVVMPDD-ESS--------------SQ-------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIE 474 (926)
Q Consensus 424 ----i~~vv~~~~-~~~--------------~~-------~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~ 474 (926)
++.+|+..+ |.. .+ ...+|.+ +|+++ ++ +|+|+.+++|++.|++
T Consensus 167 ~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~~~-~~------~~~Gl~v~eA~~~Ii~ 239 (252)
T 2wfd_A 167 LPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIML-VD------GFKGQKVQDVKKTIQK 239 (252)
T ss_dssp TTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-ST------TSTTCBHHHHHHHHHH
T ss_pred cccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCceEe-ee------ccCCeEHHHHHHHHHH
Confidence 567776542 110 00 1335554 68887 43 4999999999999999
Q ss_pred HHHHcCCCc
Q 002411 475 WAEKTGNGK 483 (926)
Q Consensus 475 ~l~~~g~~~ 483 (926)
+|++.|.+.
T Consensus 240 ~L~~~g~~~ 248 (252)
T 2wfd_A 240 KMIDAGDAL 248 (252)
T ss_dssp HHHHTTSEE
T ss_pred HHHHCCCCc
Confidence 999998765
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=1.6e-29 Score=269.11 Aligned_cols=174 Identities=18% Similarity=0.243 Sum_probs=125.3
Q ss_pred ceeEEEeecCCccccCCcEEEECCCCccchhccccc-------chhHHHHHHHHHhccchhhHhHhhhhccccccceEEe
Q 002411 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVSTT-------QSQNIEEYKNLASRKSDLERTELQKEKTGVFSGCYAR 378 (926)
Q Consensus 306 ~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~~~-------~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 378 (926)
+.+|+||||||||||||+||||||+++|+.+.+..+ ....+..|+......+++ ..+.+.+|..|+|+++.
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~L~G~~~~ 109 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYY--KPLFTINGKTLIGSRID 109 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCC--CCSEEEEHHHHTTCEEE
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhccccc--EEEEEEecccccCCEEE
Confidence 478999999999999999999999999987654321 111111111111111111 11223334469999999
Q ss_pred cCCC-CCcccEEecCcccCCCCCCceeecCCCChhhHHHHHH-------cC-------CceeeeecCC-CCCCcc-----
Q 002411 379 NPAS-GEAIPIWVADYVLGSYGTGAIMAVPAHDTRDHEFALK-------FD-------ISIHSVVMPD-DESSSQ----- 437 (926)
Q Consensus 379 ~P~~-~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~k-------~~-------Lpi~~vv~~~-~~~~~~----- 437 (926)
||++ ++.+|||+++||++++|||+||+|||||++||++|++ || ||++++|++. ++...+
T Consensus 110 ~Pl~~~~~ipV~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~ 189 (261)
T 2wfg_A 110 APYAVNKNLRVLPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVN 189 (261)
T ss_dssp CTTCSSCSEEEEECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHH
T ss_pred CCCCCCceeEEEeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhc
Confidence 9998 5789999999999999999999999999999999999 99 8999999863 121110
Q ss_pred ----------------ccccccc---CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCceeEee
Q 002411 438 ----------------SEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGKKKVNY 488 (926)
Q Consensus 438 ----------------~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~~~~~~ 488 (926)
...+|.+ .|.|. + ..|+|+.+++|++.|+++|++.|.+....++
T Consensus 190 ~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~-~------g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~ 252 (261)
T 2wfg_A 190 DLKIQSPKDSVQLANAKELAYKEGFYNGTML-I------GKYKGDKVEDAKPKVKQDLIDEGLAFVYNEP 252 (261)
T ss_dssp HTTCCSTTCHHHHHHHHHHHHHHHHHHCEEC-S------STTTTSBHHHHHHHHHHHHHHTTSEEEECC-
T ss_pred cccccccchhhhhhhhhhhhhhcccccceEe-c------cccCCeEHHHHHHHHHHHHHHCCCeeeeeee
Confidence 0122322 24553 2 2499999999999999999999988765443
No 26
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.94 E-value=6.2e-28 Score=254.86 Aligned_cols=171 Identities=18% Similarity=0.160 Sum_probs=125.7
Q ss_pred ceeEEEeecCCccccCCcEEEECCCCccchhccc-ccchhHHHHHHHHHhccchh------hHhHhhhhccccccceEEe
Q 002411 306 DIKITVYTTRPDTIFGATYLVVAPEHPLLSSLVS-TTQSQNIEEYKNLASRKSDL------ERTELQKEKTGVFSGCYAR 378 (926)
Q Consensus 306 ~~~i~i~TTrP~Tl~g~~~v~v~p~~~y~~~~~~-~~~~~~~~~y~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~ 378 (926)
+.+++||||||||||||+||||||+..|+.+.+. .+.....++........... ....+...+|..|.|.++.
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~ 158 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVR 158 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEE
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEE
Confidence 5899999999999999999999999999877653 21111111222111111000 0112334566679999999
Q ss_pred cCCCCC-cccEEecCcccCCCCCCceeecCCCChhhHHH-----------HHHcCC---------ceeeeecCCC-CCC-
Q 002411 379 NPASGE-AIPIWVADYVLGSYGTGAIMAVPAHDTRDHEF-----------ALKFDI---------SIHSVVMPDD-ESS- 435 (926)
Q Consensus 379 ~P~~~~-~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~-----------~~k~~L---------pi~~vv~~~~-~~~- 435 (926)
||++++ .+||++++||++++|||+||+|||||++||++ ++|||| +++.||+..+ |..
T Consensus 159 hPl~~~~~ipIl~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~ 238 (311)
T 3pz6_A 159 APLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLS 238 (311)
T ss_dssp CTTCSSSCEEEEECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSH
T ss_pred CCCCCCCeeEEEecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCcc
Confidence 999996 99999999999999999999999999999984 455885 7788887432 221
Q ss_pred -------------c-------cccccccc---CceEeccCCcccccccCCCCHHHHHHHHHHHHHHcCCCc
Q 002411 436 -------------S-------QSEKAYTG---EGLIVNSSNLISGLDINGLSCQEATSKVIEWAEKTGNGK 483 (926)
Q Consensus 436 -------------~-------~~~~~y~~---~g~~~~~~~~~~~~~~~gl~~~~a~~~i~~~l~~~g~~~ 483 (926)
+ ++..+|.. +|+|+ ++ .|+|+++++|+++|+++|.+.|.+.
T Consensus 239 A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~-~g------~~~G~~V~eAk~~i~~~L~~~g~a~ 302 (311)
T 3pz6_A 239 AVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK-MG------PFAGQSVKDCKQSCRDLLVQNNQCI 302 (311)
T ss_dssp HHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC-SS------TTTTSBHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe-ee------ccCCeEHHHHHHHHHHHHHHCCCce
Confidence 0 13357863 69997 43 4899999999999999999998765
No 27
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.89 E-value=7.4e-25 Score=257.96 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=95.5
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccC--hHH---HHHHHHh--CCCc--------
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFG--LPA---EQYAIET--GTHP-------- 159 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~G--lpi---e~~a~~~--g~~~-------- 159 (926)
+.|++.+.|+|||. |||||+|+++..|+++||++++|++|.++.++|++| .++ ...+.+. |.++
T Consensus 20 ~~yv~~tgPsPtG~-lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~ 98 (523)
T 1irx_A 20 EKYVVESGITPSGY-VHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWG 98 (523)
T ss_dssp SEEEEEEEECCSSC-CCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTS
T ss_pred CeEEECCCCCCCCC-cccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchh
Confidence 45677778999998 999999999999999999999999999999999999 444 2334444 7766
Q ss_pred --hHHHHHHHHHHHHHHHHcCccccccCccccCChhHHH-HHHHHHHHHhhCC-cEEE
Q 002411 160 --KITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYK-WTQWIFLQLLKRG-LAYQ 213 (926)
Q Consensus 160 --~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~-~v~~~f~~L~~~G-liy~ 213 (926)
+++++++.+.|+++|+.|||.+| .. ++++. |.+ .+++++.+|.++| .||.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~Lgi~~D--~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 99 CHESYAEHFMRKFEEEVEKLGIEVD--LL-YASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTCCCE--EE-EHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCce--EE-echhh-ccchHHHHHHHHHHHchHHHHH
Confidence 88999999999999999999766 33 44332 777 8899999999999 7774
No 28
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.87 E-value=1.7e-22 Score=240.68 Aligned_cols=115 Identities=22% Similarity=0.168 Sum_probs=93.6
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHH-------------------------
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAE------------------------- 149 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie------------------------- 149 (926)
+..|.-.-|+|||+ +||||+|+.+++|+++||+|+.||+|.++..+++.|..+-
T Consensus 104 ~v~ve~~spn~~~~-~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~ 182 (592)
T 1iq0_A 104 VVLVEHTSVNPNKE-LHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGR 182 (592)
T ss_dssp EEEEECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHH
T ss_pred eEEEEeeCCCCCCC-CcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHH
Confidence 45777779999998 9999999999999999999999999999755555543221
Q ss_pred ---H------------------HHHHhCCCchHHHHHHHHHHHHHHHHcCccccccCccccCChhHHHHHHHHHHHHhhC
Q 002411 150 ---Q------------------YAIETGTHPKITTLRNINRFRTQLKSLGFSYDWNREISTIEPAYYKWTQWIFLQLLKR 208 (926)
Q Consensus 150 ---~------------------~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~ 208 (926)
. .+.+.|. .+.+++.+++.|++++++|||.+| .+..|++..+...+++++.+|.++
T Consensus 183 ~y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~k 259 (592)
T 1iq0_A 183 AYVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQS 259 (592)
T ss_dssp HHHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHC
Confidence 0 1133454 478889999999999999999887 666776665688999999999999
Q ss_pred CcEEE
Q 002411 209 GLAYQ 213 (926)
Q Consensus 209 Gliy~ 213 (926)
|++|+
T Consensus 260 G~~y~ 264 (592)
T 1iq0_A 260 PHVFR 264 (592)
T ss_dssp TTEEC
T ss_pred CCccc
Confidence 99995
No 29
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.86 E-value=2.1e-20 Score=214.65 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=89.7
Q ss_pred ceeE-eccCCcccccccc--ccccccCCCccCcchhhhhcCchhhhHHhhhcCCcCCCCcCCchhhHHHHH-----HH--
Q 002411 665 DFFV-MKDNPNIRLIARA--HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR-----FL-- 734 (926)
Q Consensus 665 hG~v-l~~~~~~~~~~~G--~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r-----~L-- 734 (926)
+||| +.++ | .|||||+||+|+|.+++++||+|++|||+++. .+..+.+|+.+.+....+ ++
T Consensus 272 ~g~V~l~~d--------G~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqY 342 (464)
T 3fnr_A 272 AQMVSLLKD--------GEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINY 342 (464)
T ss_dssp ECCEEEEET--------TEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHH
T ss_pred eeeEEecCC--------CcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHH
Confidence 7898 5554 5 49999999999999999999999999999965 457777787766533211 22
Q ss_pred --HHHHHHHhcCCCCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccc
Q 002411 735 --GRMWRLIVGSSLPDGTFKGGTVVNDEEPTLEQLCTLHKCIAKVTEEIEGTRFNTGISAMMEFINAAYKWEK 805 (926)
Q Consensus 735 --~r~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~~~~~~~~~ 805 (926)
.|+.+++....................++.+++..+.++.+.+.+++++|+++.++..+++|+..+|+|+.
T Consensus 343 a~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~ 415 (464)
T 3fnr_A 343 AHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYN 415 (464)
T ss_dssp HHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 23333332211111111100011112236778899999999999999999999999999999999998763
No 30
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.86 E-value=6.4e-21 Score=227.73 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHH-----------------------
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAE----------------------- 149 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie----------------------- 149 (926)
.++..|--.-|.|||+ +||||+|+.+++|+++|+++..||+|.+....+++|..+.
T Consensus 118 ~~~V~ve~~spN~~~~-~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKP-LHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TCEEEEECCCCCTTSC-CBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeCCCCCCC-CccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 3456666668999998 9999999999999999999999999999988888876632
Q ss_pred ----------------HHHHHhCCC--------------------chHHHHHHHHHHHHHHHHcCccccccCccccCChh
Q 002411 150 ----------------QYAIETGTH--------------------PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 193 (926)
Q Consensus 150 ----------------~~a~~~g~~--------------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~ 193 (926)
..+.+.+.+ .+.+++.+++.|++++++|||.+| .+..+++..
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~ 274 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIV 274 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCccc
Confidence 112222222 367788889999999999999987 677776665
Q ss_pred HHHHHHHHHHHHhhCCcEEE
Q 002411 194 YYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 194 y~~~v~~~f~~L~~~Gliy~ 213 (926)
+...++.++.+|.++|++|+
T Consensus 275 ~~~~v~~vi~~L~~kG~~y~ 294 (629)
T 2zue_A 275 RRKLFEIALELLSKNENFYI 294 (629)
T ss_dssp HTTHHHHHHHHHHTSTTEEC
T ss_pred cchhHHHHHHHHHHCCCccc
Confidence 68899999999999999994
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.57 E-value=5.4e-14 Score=166.79 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=92.5
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHH---------------------
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQY--------------------- 151 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~--------------------- 151 (926)
.++..|--.-|+|+|+ +||||+|+.+++|+++|+++..||+|.+.....++|.++-..
T Consensus 142 ~~~V~ve~~spN~~~p-lHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKP-FHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp CCEEEEECCCCBTTSC-CBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCeEEEEecCCCCCCC-CccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 3466666679999999 999999999999999999999999999998888877764211
Q ss_pred ---------------------------HHH------hCCC-----chHHHHHHHHHHHHHHHHcCccccccCccccCChh
Q 002411 152 ---------------------------AIE------TGTH-----PKITTLRNINRFRTQLKSLGFSYDWNREISTIEPA 193 (926)
Q Consensus 152 ---------------------------a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~d~~ 193 (926)
|.+ .|.. .+.+++..++.|++++++|||.+| .+..++ .
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD--~~~~ES--~ 296 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGES--Q 296 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGG--G
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcce--eecCcc--h
Confidence 221 2432 245678888999999999999987 433332 3
Q ss_pred HH-HHHHHHHHHHhhCCcEEEe
Q 002411 194 YY-KWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 194 y~-~~v~~~f~~L~~~Gliy~~ 214 (926)
|. ..+..++..|.++|++|+.
T Consensus 297 ~~~~~~~~vi~~L~~kG~~ye~ 318 (607)
T 1f7u_A 297 VSKESMLKAIDLFKEKGLTHED 318 (607)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhhhHHHHHHHHHHhCCCEEEE
Confidence 44 6789999999999999986
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=97.96 E-value=6.3e-06 Score=89.17 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
=+|.|+|. |||||+++.+ .+|+..+++.+.|+.-+|+...+ .....+++.|.++|+.||+
T Consensus 10 FAPsPtG~-LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~LGl- 69 (298)
T 1nzj_A 10 FAPSPSGE-LHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEHYGL- 69 (298)
T ss_dssp ECCCTTSC-CCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHHTTC-
T ss_pred ECcCCCCC-ccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHHcCC-
Confidence 38999998 9999999997 55666667778888888876532 2235688999999999999
Q ss_pred ccccC-ccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 181 YDWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 181 ~Dw~~-~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+|+. .++. .++....+.+..+|.++|++|.-
T Consensus 70 -~~D~~~~~q--Ser~~~y~~~~~~L~~~G~aY~c 101 (298)
T 1nzj_A 70 -HWDGDVLWQ--SQRHDAYREALAWLHEQGLSYYC 101 (298)
T ss_dssp -CCSSCCEEG--GGCHHHHHHHHHHHHHTTCEEEE
T ss_pred -CCCCCCeee--eCCHHHHHHHHHHHHHcCCcccC
Confidence 5555 3333 35667788999999999999964
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.95 E-value=6.3e-06 Score=95.31 Aligned_cols=94 Identities=23% Similarity=0.317 Sum_probs=73.9
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++==+|.|||. |||||+++.++...++| +|++.++.-+|+...+ ....++++.|.++|+.
T Consensus 97 v~tRFaPsPtG~-LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~w 157 (553)
T 3aii_A 97 VVLRFAPNPSGP-LHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEW 157 (553)
T ss_dssp CEEEECCCSSSS-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHH
T ss_pred eEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHH
Confidence 344458999998 99999999988655554 6788888888888643 1244788999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
||+ +|+..++ ..+|......+..+|.++|++|.
T Consensus 158 LGl--~wd~~~~--qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 158 LGV--EWDETVI--QSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HTC--CCSEEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCC--CCCCCcc--cccCHHHHHHHHHHHHHcCCcee
Confidence 999 5555443 35788888899999999999997
No 34
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=97.92 E-value=1.2e-05 Score=92.97 Aligned_cols=94 Identities=20% Similarity=0.363 Sum_probs=69.9
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
++==+|.|||. |||||+++.++...+|| ++...++.-+|+... ...+.++.+.|.++|+.|
T Consensus 28 ~tRFaPSPtG~-LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~-------------~R~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 28 HTRFPPEPNGY-LHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP-------------VKEDIEYVESIKNDVEWL 88 (553)
T ss_dssp EEEECCCTTSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG-------------GGCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc-------------hhcCHHHHHHHHHHHHHc
Confidence 33348999998 99999999988766666 566777777887753 223567899999999999
Q ss_pred CccccccCccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 178 GFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 178 gi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
|+..| +..++. .+|.........+|.++|++|.
T Consensus 89 Gl~wd-e~~~~q--Ser~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 89 GFHWS-GNVRYS--SDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TCCCS-SSCEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCC-CCCeeh--cccHHHHHHHHHHHHHCCCcee
Confidence 99443 233333 3555555666679999999997
No 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.72 E-value=4.1e-05 Score=88.28 Aligned_cols=95 Identities=21% Similarity=0.244 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
++++--.|.|+|. |||||+|+.++.|.+||. ..|.-++.+- +.+ +......+.+.+.++|+
T Consensus 13 vv~~RfaPsPTG~-LHiG~aRtAl~n~~~Ar~--~~G~~iLRie---DtD-------------~~r~~~~~~~~I~~~l~ 73 (481)
T 2o5r_A 13 MVRVRFAPSPTGF-LHVGGARTALFNFLFARK--EKGKFILRIE---DTD-------------LERSEREYEEKLMESLR 73 (481)
T ss_dssp CCEEEECCCCCSC-CBHHHHHHHHHHHHHHHH--HTCEEEECBC---CSS-------------CCSGGGHHHHHHHHHHH
T ss_pred EEEEEECCCCCCC-cCHHHHHHHHHHHHHHHH--cCCeEEEEEe---cCC-------------ccccHHHHHHHHHHHHH
Confidence 4455558999998 999999999999999998 6887777644 333 22233556777899999
Q ss_pred HcCccccccCc---------cccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 176 SLGFSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 176 ~lgi~~Dw~~~---------~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
.||+ +|+.. |. ..++.+..+++..+|.++|.+|.
T Consensus 74 wlGl--~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 74 WLGL--LWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp HHTC--CCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HcCC--CCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeE
Confidence 9999 56652 32 34566777888999999999985
No 36
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.66 E-value=4.4e-05 Score=92.18 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=73.0
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKS 176 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 176 (926)
+++==+|.|||. |||||+++.++...++| +|.+.|+.-+|+.... ....++++.|.++|+.
T Consensus 67 v~tRFaPSPtG~-LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~w 127 (851)
T 2hz7_A 67 VVTRFPPDPSGY-AHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLKW 127 (851)
T ss_dssp CEEEECCCSSSC-CBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCC-ccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHH
Confidence 444448999998 99999999988655555 5777888888887542 2256889999999999
Q ss_pred cCccccccCccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 177 LGFSYDWNREISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 177 lgi~~Dw~~~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
||+..| +..++ ..+|.........+|.++|++|.
T Consensus 128 LGl~wd-e~~~~--qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 128 LGLDWG-EHFYY--ASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HTCCCT-TCEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCC-CCccc--HhhhHHHHHHHHHHHHHCCCcEe
Confidence 999443 23333 34777888889999999999997
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.64 E-value=4.1e-05 Score=88.39 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
+|.|+|. |||||+++.+.. |+..+++.+.|+.-+|+... ......+++.|.++|+.||+
T Consensus 7 APSPtG~-lHiG~artal~n-----~l~Ar~~~G~filRieDtD~-------------~R~~~~~~~~i~~dL~wLGl-- 65 (492)
T 2cfo_A 7 APSPTGN-LHIGTARTAVFN-----WLYARHRGGKFILRIEDTDR-------------ERSRPEYTENILEGLQWLGL-- 65 (492)
T ss_dssp CCCTTSC-CBHHHHHHHHHH-----HHHHHHTTCEEEEEECCCSS-------------SSCCHHHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHH-----HHHHHhcCCeEEEEEeeCCc-------------cccchHHHHHHHHHHHHcCC--
Confidence 7999998 999999999885 55555567777777777753 11235788999999999999
Q ss_pred cccC-ccccCChhHHHHHHHHHHHHhhCCcEEE
Q 002411 182 DWNR-EISTIEPAYYKWTQWIFLQLLKRGLAYQ 213 (926)
Q Consensus 182 Dw~~-~~~T~d~~y~~~v~~~f~~L~~~Gliy~ 213 (926)
+|+. +|+. .++...-+....+|.++|++|.
T Consensus 66 ~wde~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 66 TWDEGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 6666 3332 3666677888899999999997
No 38
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.63 E-value=5.9e-05 Score=88.88 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=70.3
Q ss_pred EcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcC
Q 002411 99 LDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLG 178 (926)
Q Consensus 99 ~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 178 (926)
+-=.|-|+|. |||||+++.++.+.+||. ..|.-++.+ |+. ++......+.+.+.++|+.||
T Consensus 132 ~RFaPsPTG~-LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDt-------------D~~r~~~~~~~~I~~dL~wlG 192 (592)
T 3al0_C 132 VRFAPSPTGH-LHVGGARTALFNWMFARK--EGGKFILRI---EDT-------------DTERSSREYEQQILESLRWCG 192 (592)
T ss_dssp EEECCCSSSC-CBHHHHHHHHHHHHHHHH--HTCEEEECB---CCC-------------CSSSCCHHHHHHHHHHHHHTT
T ss_pred EEECCCCCCC-ccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCc-------------ChhhccHHHHHHHHHHHHHcC
Confidence 3346999998 999999999999999986 456555554 332 233345678889999999999
Q ss_pred ccccccCc---------cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 179 FSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 179 i~~Dw~~~---------~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+ +|+.. |+. .++....+....+|.++|++|.-
T Consensus 193 l--~~D~~~~~gG~~gp~~q--Ser~~~y~~~~~~L~~~G~aY~c 233 (592)
T 3al0_C 193 L--DWDEGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 233 (592)
T ss_dssp C--CCSBBTTTBCTTCCCBS--TTCHHHHHHHHHHHHHTTTEEEE
T ss_pred C--CCCCCCCcCCCCCCeee--eCCHHHHHHHHHHHHHcCCceEe
Confidence 9 56663 343 34456778889999999999975
No 39
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.46 E-value=0.00012 Score=83.95 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 101 MFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 101 ~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
=.|.|+|. |||||+++.+...+++|. +...|+.-+|+... ......+++.+.++|+.||+
T Consensus 30 FAPSPTG~-lHiG~~rtal~n~l~Ar~-----~~G~filRieDtD~-------------~R~~~~~~~~i~~dl~wlGl- 89 (490)
T 4g6z_A 30 FAPSPTGF-IHLGNIRSALYPWAFARK-----MKGTFVLRIEDTDV-------------ERSSQEAVDAILEGMAWLGL- 89 (490)
T ss_dssp ECCCCCSC-CBHHHHHHHHHHHHHHHH-----TTCEEEEEECCCCG-------------GGCCHHHHHHHHHHHHHTTC-
T ss_pred eCCCCCCC-ccHHHHHHHHHHHHHHHh-----cCCeEEEEeCCCCc-------------ccccHHHHHHHHHHHHHcCC-
Confidence 37999998 999999999998887774 33445555555432 22245789999999999999
Q ss_pred ccccCc-cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 181 YDWNRE-ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 181 ~Dw~~~-~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+|+.. |. ..++....+.++.+|.++|++|.-
T Consensus 90 -~~d~~~~~--qS~r~~~y~~~~~~Li~~G~aY~C 121 (490)
T 4g6z_A 90 -DYDEGPYY--QMQRMDRYREVLAQMQEKGLVYPC 121 (490)
T ss_dssp -CCSEEEEE--GGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCCCCCcc--cccCHHHHHHHHHHHHHCCCEEeC
Confidence 66653 33 246677778899999999999975
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.25 E-value=0.00023 Score=81.96 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=68.4
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
++=-+|.|+|. |||||+++.+..-.+||- ..|. ++.=+|+... ......+.+.|.++|+.|
T Consensus 27 ~~RFAPsPtG~-LHiG~~rtal~n~l~Ar~--~~G~---filRieDtD~-------------~R~~~~~~~~I~~dL~wl 87 (488)
T 3afh_A 27 RVRFAPSPTGH-LHVGGARTALFNWMFARK--EGGK---FILRIEDTDT-------------ERSSREYEQQILESLRWC 87 (488)
T ss_dssp EEEECCCCSSS-CBHHHHHHHHHHHHHHHH--HTCE---EEECBCCCCT-------------TTCCHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCC-ccHHHHHHHHHHHHHHHH--cCCE---EEEEEeeCCc-------------ccccHHHHHHHHHHHHHc
Confidence 33348999998 999999999888777664 3443 4444555432 223457788899999999
Q ss_pred CccccccCc---------cccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 178 GFSYDWNRE---------ISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 178 gi~~Dw~~~---------~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
|+ ||+.. |+. .++....+....+|.++|++|.-
T Consensus 88 Gl--~wDe~~~~gG~~gp~~Q--Ser~~~y~~~~~~L~~~G~aY~c 129 (488)
T 3afh_A 88 GL--DWDEGPDIGGDFGPYRQ--SERLEIYREYAEKLVEDKRAYYV 129 (488)
T ss_dssp TC--CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CC--CCCcCCCCCCCCCCeee--eCCHHHHHHHHHHHHHcCCeEec
Confidence 99 56673 333 35567788899999999999975
No 41
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.10 E-value=0.00034 Score=80.26 Aligned_cols=92 Identities=25% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
+|-|+|. |||||+++.++.-.+||- ..| .|+.=+|+... ......+.+.+.++|+.||+
T Consensus 7 aPsPtG~-LHiG~~rtal~n~l~Ar~--~~G---~filRieDtD~-------------~R~~~~~~~~I~~dl~wlGl-- 65 (468)
T 1j09_A 7 APSPTGD-PHVGTAYIALFNYAWARR--NGG---RFIVRIEDTDR-------------ARYVPGAEERILAALKWLGL-- 65 (468)
T ss_dssp CCCCSSS-CBHHHHHHHHHHHHHHHH--TTC---EEEECBCCCCT-------------TSCCTTHHHHHHHHHHHTTC--
T ss_pred CCCCCCC-ccHHHHHHHHHHHHHHHH--cCC---EEEEEeCcCCC-------------cccChHHHHHHHHHHHHcCC--
Confidence 7999998 999999999988777763 344 34455555532 12244678889999999999
Q ss_pred cccCcc-------ccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNREI-------STIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~~~-------~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+... -....++.+.-+....+|.++|++|.-
T Consensus 66 ~wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c 105 (468)
T 1j09_A 66 SYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRA 105 (468)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEc
Confidence 676652 022346666778888999999999975
No 42
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.99 E-value=0.00075 Score=78.54 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
+|-|||. |||||+++.++.-.+||- ..|.-+ .=+|+... ......+.+.+.++|+.||+
T Consensus 30 APsPtG~-LHiG~artAl~n~~~Ar~--~~G~fi---LRieDtD~-------------~R~~~~~~~~I~~~L~wlGl-- 88 (512)
T 4gri_A 30 APSPTGL-QHIGGIRTALFNYFFAKS--CGGKFL---LRIEDTDQ-------------SRYSPEAENDLYSSLKWLGI-- 88 (512)
T ss_dssp CCCSSSC-CBHHHHHHHHHHHHHHHH--TTCEEE---ECBCCCCT-------------TSCCHHHHHHHHHHHHHHTC--
T ss_pred CcCCCCc-ccHHHHHHHHHHHHHHHH--cCCEEE---EEeCcCCC-------------CcCCHHHHHHHHHHHHHcCC--
Confidence 8999998 999999999998888763 355433 33444432 22234678889999999999
Q ss_pred cccCccc------c-CChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNREIS------T-IEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~~~~------T-~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
+|+.... + ...++.+.-+....+|.++|++|.-
T Consensus 89 ~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C 128 (512)
T 4gri_A 89 SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYYC 128 (512)
T ss_dssp CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCcccc
Confidence 5554211 1 1234445556788899999999964
No 43
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=96.92 E-value=0.0012 Score=76.01 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=67.7
Q ss_pred CCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCccc
Q 002411 102 FPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSY 181 (926)
Q Consensus 102 ~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 181 (926)
+|-|+|. |||||+++.++.-.+||- ..|.-++. +|+. ++......+.+.+.++|+.||+
T Consensus 12 APsPTG~-LHiG~~rtAL~n~l~Ar~--~gG~fiLR---ieDt-------------D~~R~~~~~~~~I~~~L~wlGl-- 70 (498)
T 2ja2_A 12 CPSPTGT-PHVGLVRTALFNWAYARH--TGGTFVFR---IEDT-------------DAQRDSEESYLALLDALRWLGL-- 70 (498)
T ss_dssp CCCSSSS-CBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCC-------------CTTTCCHHHHHHHHHHHHHHTC--
T ss_pred CcCCCCC-ccHHHHHHHHHHHHHHHH--cCCEEEEE---ECcC-------------CCcccChHHHHHHHHHHHHcCC--
Confidence 7999998 999999999999888883 45644443 3333 2333345778899999999999
Q ss_pred cccC---------ccccCChhHHHHHHHHHHHHhhCCcEEEe
Q 002411 182 DWNR---------EISTIEPAYYKWTQWIFLQLLKRGLAYQA 214 (926)
Q Consensus 182 Dw~~---------~~~T~d~~y~~~v~~~f~~L~~~Gliy~~ 214 (926)
||+. +|.. .++.+.-+....+|.++|++|.-
T Consensus 71 ~wDegp~~gG~~~~~~Q--S~r~~~y~~~~~~L~~~g~aY~c 110 (498)
T 2ja2_A 71 DWDEGPEVGGPYGPYRQ--SQRAEIYRDVLARLLAAGEAYHA 110 (498)
T ss_dssp CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCcCcCCCCCCeee--ecCHHHHHHHHHHHHHcCCeEEe
Confidence 6766 3433 45566677888999999999975
No 44
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.54 E-value=0.0011 Score=76.65 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=44.4
Q ss_pred ecceeEeccCCccccccccccccccCCC---------------ccCcchhhhh-cCchhhhHHhhhcCCcCCCCcCCchh
Q 002411 663 SGDFFVMKDNPNIRLIARAHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSG 726 (926)
Q Consensus 663 ~~hG~vl~~~~~~~~~~~G~KMSKSkGN---------------vv~p~eii~~-yGaD~lRl~ll~~~~~~~~~~~~~~~ 726 (926)
| +|++..+ |+|||||+|| ..+..++.++ |.++++|.|++..+....+..++.+.
T Consensus 319 H-~~~L~~~---------g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G~s~~~~~~s~~~ 388 (553)
T 3aii_A 319 H-YGRLKMD---------DVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIGVKIADSTMSWKK 388 (553)
T ss_dssp C-CCCBC----------------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHTTCSSCBCCCHHH
T ss_pred E-eeEEecC---------CceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcCCCCccccccHHH
Confidence 5 6777543 8999999998 6677888876 99999999999888867778899888
Q ss_pred hHHHHHH
Q 002411 727 IEGVHRF 733 (926)
Q Consensus 727 i~~~~r~ 733 (926)
+..+.|.
T Consensus 389 L~~~~r~ 395 (553)
T 3aii_A 389 IYGLNRS 395 (553)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 45
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0035 Score=68.70 Aligned_cols=71 Identities=23% Similarity=0.184 Sum_probs=48.6
Q ss_pred CCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccc
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIAR 680 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~ 680 (926)
+.+|+.++|.||.. |+..+|-.... ++...|+ ++ | +.++..-+
T Consensus 169 ~~~~~v~~G~DQ~~-~~~l~rdla~~------------------------~~~~~p~--~l-~-~pll~~l~-------- 211 (323)
T 2cyb_A 169 LGVDLAVGGIDQRK-IHMLARENLPR------------------------LGYSSPV--CL-H-TPILVGLD-------- 211 (323)
T ss_dssp TTCSEEEEEGGGHH-HHHHHHHHGGG------------------------GTCCCCE--EE-E-ECCCBCTT--------
T ss_pred cCCCEEEechhhHH-HHHHHHHHHHh------------------------cCCCCce--EE-e-cCcccCCC--------
Confidence 58999999999964 55555532210 0112232 22 2 45666554
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhhc
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 713 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~ 713 (926)
|+|||||.||.|.+.+ .+|++|..++.+
T Consensus 212 G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 212 GQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp SSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 9999999999999987 499999998864
No 46
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=95.61 E-value=0.011 Score=68.27 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=38.0
Q ss_pred EEeecceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcCC
Q 002411 660 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 715 (926)
Q Consensus 660 v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~~ 715 (926)
.+.| .+++++.+ |+|||||+||+ ...++.++ |.++++|.|++..+.
T Consensus 233 ~~~H-~plil~~~--------g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~ 279 (492)
T 2cfo_A 233 NFAH-TPLILNST--------GQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGW 279 (492)
T ss_dssp EEEE-ECCEECSS--------SSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTB
T ss_pred eEEE-eeeEECCC--------CCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCC
Confidence 4556 68888876 99999999997 67788764 999999999997663
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.88 E-value=0.017 Score=66.82 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=39.9
Q ss_pred cccccccCCC---------------ccCcchhhhh-cCchhhhHHhhhcCCcCCCCcCCchhhHHHHHH
Q 002411 681 AHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHRF 733 (926)
Q Consensus 681 G~KMSKSkGN---------------vv~p~eii~~-yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r~ 733 (926)
|+|||||+|| .++..++.++ |.++++|.|++..+....+...+...++.+.+|
T Consensus 265 g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~~ 333 (553)
T 1qtq_A 265 YTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE 333 (553)
T ss_dssp TSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHHH
T ss_pred CccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHHh
Confidence 8999999997 6677888876 999999999998876443333355566665553
No 48
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=93.51 E-value=0.04 Score=60.13 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=25.5
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.||.|...+ ++..++.++=.++.
T Consensus 233 G~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 233 GTKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp SCBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred cccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 8999999999999888 67778888877764
No 49
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=93.48 E-value=0.038 Score=61.80 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=22.5
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.||.|...+= +-+++.++=+++.
T Consensus 291 G~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 320 (392)
T 1y42_X 291 GAKFGKSAGNAIWLDPY--QTSVFDFYGYFVR 320 (392)
T ss_dssp CCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred hhhccCCCCCeeeccCC--CCCHHHHHHHHHc
Confidence 89999999999988763 3456666666664
No 50
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=92.87 E-value=0.061 Score=60.72 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=23.0
Q ss_pred cccccccCCC-ccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGN-VVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGN-vv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.|| .|...+ ++-.++.++=+++.
T Consensus 229 G~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 229 GTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp SCBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred cCcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 8999999999 888776 25566777766664
No 51
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=92.76 E-value=0.11 Score=56.64 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=37.0
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGF 179 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 179 (926)
|+|. |||||..+.+.. +.++++ |+++.+..| |.|++-. ..++ +..++++..+..++.++|+
T Consensus 12 PTg~-lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~~-------~~~~-~~l~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 12 PSGD-LHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMTS-------SQDG-EKLKQNSLKAAAAFLSLGI 72 (322)
T ss_dssp CSSC-CBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTTT-------CCCH-HHHHHHHHHHHHHHHHTTC
T ss_pred CCcc-ccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeecC-------CCCH-HHHHHHHHHHHHHHHHcCC
Confidence 5676 999998875544 555655 888877766 4454411 1122 3345555566666667776
No 52
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=92.75 E-value=0.066 Score=60.43 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=23.5
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.||.|...+- +-.++.++=+++.
T Consensus 229 G~KMSKS~~naI~L~d~--~tsp~~i~~ki~~ 258 (420)
T 1jil_A 229 GKKFGKSESGAVWLDAE--KTSPYEFYQFWIN 258 (420)
T ss_dssp SCBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred cccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 89999999999988762 5567777766664
No 53
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=92.63 E-value=0.071 Score=64.61 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=37.6
Q ss_pred cccccccCCC---------------ccCcchhhhh-cCchhhhHHhhhcCCcCCCCcCCchhhHHHHH
Q 002411 681 AHKMSKSRGN---------------VVNPDDVVTE-YGADSLRLYEMFMGPFRDSKTWNTSGIEGVHR 732 (926)
Q Consensus 681 G~KMSKSkGN---------------vv~p~eii~~-yGaD~lRl~ll~~~~~~~~~~~~~~~i~~~~r 732 (926)
|+|||||+|| ..+..++.++ |.++++|.|++..+....+...+...++.+.+
T Consensus 305 g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 305 YTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp TCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHH
T ss_pred CccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHH
Confidence 8999999987 4567778866 99999999999877644333234445554444
No 54
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=92.62 E-value=0.063 Score=60.49 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=23.4
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.||.|...+- +-.++.++=+++.
T Consensus 228 G~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 257 (419)
T 2ts1_A 228 GTKFGKTESGTIWLDKE--KTSPYEFYQFWIN 257 (419)
T ss_dssp SCCTTCCSSCCCBSSTT--TSCHHHHHHHHHT
T ss_pred cccccCCCCCeEecCCC--CCCHHHHHHHHhc
Confidence 89999999999988762 4566777766664
No 55
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=92.31 E-value=0.058 Score=59.61 Aligned_cols=30 Identities=23% Similarity=0.187 Sum_probs=15.0
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.||.|...+ ++-.++.++=.++.
T Consensus 252 G~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 252 GAKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp ----------CCBSST--TTSCHHHHHHHHHT
T ss_pred cccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 8999999999998887 35677888877775
No 56
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=92.02 E-value=0.12 Score=56.58 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=39.3
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
|+|. |||||..+.+. -+.++ ...|++|.+..| |.|++-. . ..+|.. .++++.....++.++|+.
T Consensus 21 PTG~-lHLGn~~g~l~--~~~~l-Q~~G~~~~~~Ia-D~ha~t~-----~-~~dp~~-~~~~~~~~~~~~lA~Gld 84 (340)
T 2g36_A 21 PTGK-LHIGHLVGALE--NWVKL-QEEGNECFYFVA-DWHALTT-----H-YDDVSK-LKEYTRDLVRGFLACGID 84 (340)
T ss_dssp CCSS-CBHHHHHTHHH--HHHHH-HHTTCEEEEEEC-HHHHHHH-----H-TTCCTT-HHHHHHHHHHHHHHTTCC
T ss_pred CCCc-ccHHhHHHHHH--HHHHH-HHCCCCEEEEEe-cceeecC-----C-CCCHHH-HHHHHHHHHHHHHHhCCC
Confidence 6686 99999988642 23333 346999988764 4444421 1 234553 455566666677788873
No 57
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=91.79 E-value=0.057 Score=66.65 Aligned_cols=76 Identities=21% Similarity=0.454 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCCC-c
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLDW-P 274 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~~-p 274 (926)
+.-..+...|.++|++.......+ .+++|++||.+++.+..+||||+++++++++++.++++.| |
T Consensus 361 ~a~~~i~~~L~~~g~~~~~~~~~h--------------~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P 426 (821)
T 1ile_A 361 EANRAILRDLRGRGLLFKEESYLH--------------SYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426 (821)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEE--------------EEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESS
T ss_pred HHHHHHHHHHHhCCCeeeeecccc--------------cCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEEC
Confidence 445667789999999877644322 2456788899999999999999999999999999887775 6
Q ss_pred HHH-HHHHHhhh
Q 002411 275 ESV-KEMQRNWI 285 (926)
Q Consensus 275 ~~~-~~~~~~~i 285 (926)
+.. ++...+||
T Consensus 427 ~~~~~~~~~~~l 438 (821)
T 1ile_A 427 PHIKEGRYGEWL 438 (821)
T ss_dssp GGGTTTTTHHHH
T ss_pred chhhHhHHHHHH
Confidence 655 23445666
No 58
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.78 E-value=0.13 Score=58.32 Aligned_cols=71 Identities=21% Similarity=0.235 Sum_probs=45.9
Q ss_pred CCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccc
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIAR 680 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~ 680 (926)
+.+|+.++|.||- .|+...|=.... + +..|. ..+. +.++..-+
T Consensus 186 l~~~l~~gG~DQ~-~ni~l~rdlarr------------------------~-~~~~~-~~lt--~pll~gld-------- 228 (432)
T 1h3f_A 186 IRADVEMGGTDQR-FNLLVGREVQRA------------------------Y-GQSPQ-VCFL--MPLLVGLD-------- 228 (432)
T ss_dssp HTCSEEEEEGGGH-HHHHHHHHHHHH------------------------T-TCCCC-EEEE--ECCCBCTT--------
T ss_pred cCccEEEechHHH-HHHHHHHHHHHH------------------------h-CCCCc-eEee--cccccCCC--------
Confidence 3599999999995 676666643211 0 11111 1222 34444444
Q ss_pred cc-cccccCCCccCcchhhhhcCchhhhHHhhhc
Q 002411 681 AH-KMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 713 (926)
Q Consensus 681 G~-KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~ 713 (926)
|. |||||.||.|...+ .++.++=+++..
T Consensus 229 G~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 229 GREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp SSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 75 99999999999887 788888887753
No 59
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=91.36 E-value=0.19 Score=57.71 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=36.2
Q ss_pred EeecceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcC
Q 002411 661 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 714 (926)
Q Consensus 661 ~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~ 714 (926)
+.| .+++++.+ |+||||++||+ +..++.++ |-++++|.|++..+
T Consensus 249 ~~H-~plil~~~--------G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 249 FAH-VSTILGPD--------GKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp EEE-ECCEECTT--------SSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred EEE-EeeEECCC--------CCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 555 57777776 99999999998 78888874 88999999988765
No 60
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=91.09 E-value=0.11 Score=56.33 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
++.++.|+= |+|. ||||| +..+.. +.++++ .|+++++..| |.|++- ...| ..+..+++...+..++
T Consensus 28 ~~~vy~G~~-PTg~-lHlGh-l~~l~~--~~~lQ~-~g~~~~~~i~-D~~a~~-----~~~~--~~e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 28 EKSAYIGFE-PSGK-IHLGH-YLQIKK--MIDLQN-AGFDIIILLA-DLAAYL-----NQKG--ELDEIRKIGDYNKKVF 93 (314)
T ss_dssp SEEEEEEEC-CCSS-CBHHH-HHHHHH--HHHHHH-TTEEEEEEEC-HHHHHH-----TTCC--CHHHHHHHHHHHHHHH
T ss_pred CCEEEEccC-CCCC-cchhh-HHHHHH--HHHHHH-CCCCEEEEEe-cceEec-----CCCC--CHHHHHHHHHHHHHHH
Confidence 445555543 3686 99999 554432 444443 5888877765 222221 0111 2344566777888888
Q ss_pred HHcCc
Q 002411 175 KSLGF 179 (926)
Q Consensus 175 ~~lgi 179 (926)
.++|+
T Consensus 94 ~a~G~ 98 (314)
T 2zp1_A 94 EAMGL 98 (314)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 88886
No 61
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=90.70 E-value=0.18 Score=62.17 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhCCcEEEeccCccccCCCCcccCchhhccCccccCCCCeEEeeccccchhhhhhHHHHhhccC--CCC-
Q 002411 196 KWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLD--DLD- 272 (926)
Q Consensus 196 ~~v~~~f~~L~~~Gliy~~~~~v~wc~~~~t~ls~~ev~~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~--~~~- 272 (926)
+.-..+...|.++|++....... ...++|++||.+++.+..+|||++++++++++++.++ .+.
T Consensus 316 ~a~~~iv~~L~~~g~l~~~~~~~--------------h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~ 381 (862)
T 1gax_A 316 EARRKAVELFREAGHLVKEEDYT--------------IALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAF 381 (862)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEE--------------ECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhCCCeeeecccc--------------ccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceE
Confidence 34566788899999987653322 2356788889999999999999999999999999985 344
Q ss_pred CcHHHHHHHHhhhc
Q 002411 273 WPESVKEMQRNWIG 286 (926)
Q Consensus 273 ~p~~~~~~~~~~i~ 286 (926)
+|++.++...+||.
T Consensus 382 ~P~~~~~~~~~wl~ 395 (862)
T 1gax_A 382 VPERWKKVNMDWLE 395 (862)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 89999998899984
No 62
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=90.34 E-value=0.17 Score=56.25 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=36.2
Q ss_pred CCceeeecccchhhhhHHHhhhhhchhheeeecCCCCccccCcccccccccccCCCcceEEeecceeEeccCCccccccc
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFWHKMQYMVCKDVDGSYISADSTDTLGEYEQESIPEEKVMKSGDFFVMKDNPNIRLIAR 680 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw~~~~~~~~~~~~g~~~s~~~~~~~s~~~~~~~P~~~v~~~~hG~vl~~~~~~~~~~~ 680 (926)
+.+|+.++|.||. .|+...|-.... +....|+ .+ + +.++..-+
T Consensus 177 ~~a~~v~~G~DQ~-~~~~l~rdl~~r------------------------~~~~~p~--~l-~-~pll~gld-------- 219 (372)
T 1n3l_A 177 LKVDAQFGGIDQR-KIFTFAEKYLPA------------------------LGYSKRV--HL-M-NPMVPGLT-------- 219 (372)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGGG------------------------GTCCCCE--EE-E-ECCCCCSS--------
T ss_pred hcCCEEEcChhHH-HHHHHHHHHHHH------------------------cCCCCCE--EE-e-cCccCCCC--------
Confidence 5789999999995 455555533211 0111222 11 1 34555444
Q ss_pred cccccccCCC-ccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGN-VVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGN-vv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.|| .|...+= ++.++=.++.
T Consensus 220 G~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 220 GSKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp CC-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred cccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 8999999999 6777653 7777777764
No 63
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=89.69 E-value=0.29 Score=55.99 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=35.9
Q ss_pred EeecceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcCC
Q 002411 661 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 715 (926)
Q Consensus 661 ~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~~ 715 (926)
+.| .+++++.+ |+||||++||. +..++.+. |-++++|-|++..+.
T Consensus 230 ~~h-~~li~~~~--------g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 230 FYH-MPLLRNPD--------KTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGF 275 (468)
T ss_dssp EEE-ECCCBCTT--------SCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred EEE-eeeeeCCC--------CCccccccchh-hHHHHHHCCCCHHHHHHHHHHhcc
Confidence 344 56777766 99999999999 67777764 889999999987664
No 64
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=89.37 E-value=0.21 Score=54.63 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=37.0
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcC-CcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQG-YNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G-~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
|+|. |||||..+.+.. +.++++ .| ++|++..| |.|++-.. + +.+ .+..++++..+..++.++|+.
T Consensus 10 PTg~-lHlGh~~g~l~~--~~~lQ~-~G~~~~~~~Ia-D~~a~~~~----~-~~~-~~~i~~~~~~~~~~~la~Gld 75 (337)
T 2el7_A 10 PSGE-IHIGNYLGAIKQ--WVAIGE-KLGRDAFFCIV-DYHALTNP----L-AYD-PSTLAQRTFEAALVNIAAGLD 75 (337)
T ss_dssp SCSC-CBHHHHHTHHHH--HHHHHH-HHGGGEEEEEC-GGGGGGST----T-TSC-HHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCc-ccHHHHHHHHHH--HHHHHh-cCCCCEEEEEe-CceeecCC----C-CCC-HHHHHHHHHHHHHHHHHhCCC
Confidence 4587 999998876422 344554 46 78766555 33444110 0 122 234556666667777777773
No 65
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=88.02 E-value=0.54 Score=54.01 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=36.6
Q ss_pred EEeecceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcCC
Q 002411 660 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 715 (926)
Q Consensus 660 v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~~ 715 (926)
.+.| ..++++.+ |+||||+.|+ ++..++.+. |-++++|-|++..+.
T Consensus 241 ~f~H-~pli~~~~--------g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~ 287 (488)
T 3afh_A 241 VFMH-IPLILGSD--------RTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 287 (488)
T ss_dssp EEEE-ECCEECTT--------SSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred eEEE-EeeeeCCC--------CCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 3445 57788776 9999999999 577888774 889999999987653
No 66
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=87.51 E-value=0.41 Score=53.07 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=36.1
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHH-HHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDI-LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di-~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
.+..|+ -|+|. ||+|| .++.-+ +.+++ ..|++|.+..| |-|++-. ...|.++++ .+.+...+.+.+.
T Consensus 58 ~iy~G~-~PTg~-lHlG~---gvl~~~~~~~lQ-~~G~~~~~lIa-D~ha~i~----d~~~~~~~~-i~~~~~~~~~~~~ 125 (373)
T 3vgj_A 58 ICYDGF-EPSGR-MHIAQ---GLLKSIIVNKLT-SNGCTFIFWIA-DWFAHLN----NKMSGDLKK-IKKVGSYFIEVWK 125 (373)
T ss_dssp EEEEEE-CCCSS-CBHHH---HHHHHHHHHHHH-TTTCEEEEEEC-HHHHHHT----TGGGGCHHH-HHHHHHHHHHHHH
T ss_pred eEEeCC-CCCCC-ceehh---hHHHHHHHHHHH-HCCCcEEEEEe-cceeEec----CCCCCCHHH-HHHHHHHHHHHHH
Confidence 344443 25576 99999 233322 44444 35888877766 4454310 011222222 3344444556666
Q ss_pred HcCcc
Q 002411 176 SLGFS 180 (926)
Q Consensus 176 ~lgi~ 180 (926)
++|+.
T Consensus 126 a~G~d 130 (373)
T 3vgj_A 126 SCGMN 130 (373)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 66663
No 67
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=87.43 E-value=0.31 Score=53.65 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=39.9
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
++.++.|+= |+|. |||||..+.+.. +.++++ .++|.+..| |.|++-.. ..++ +..+++...+..++
T Consensus 22 ~~~vysG~~-PTG~-lHLGn~~g~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~~------~~~~-e~i~~~~~~~~~~~ 87 (351)
T 1yi8_B 22 RPRVLTGDR-PTGA-LHLGHLAGSLQN--RVRLQD--EAELFVLLA-DVQALTDH------FDRP-EQVRENVLAVALDY 87 (351)
T ss_dssp CSEEEEEEC-CSSC-CBHHHHHHTHHH--HHHHTS--SSEEEEEEC-HHHHHHHH------TTCH-HHHHHHHHHHHHHH
T ss_pred CcEEEEeeC-CCCC-ccHHHHHHHHHH--HHHHHH--hCCeEEEEe-cchhhcCC------CCCH-HHHHHHHHHHHHHH
Confidence 344444533 4687 999998886422 223332 367755543 44444211 2333 34556666777788
Q ss_pred HHcCc
Q 002411 175 KSLGF 179 (926)
Q Consensus 175 ~~lgi 179 (926)
.++|+
T Consensus 88 la~Gl 92 (351)
T 1yi8_B 88 LAAGL 92 (351)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 88887
No 68
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=87.33 E-value=0.12 Score=63.56 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=43.2
Q ss_pred cCccccCCCCeEEe-eccccchhhhh--hHHHHhhccCCCC-CcHHHHHHHHhhhc
Q 002411 235 DGVSERGGHPVIRK-PMRQWMLKITE--YADRLLDDLDDLD-WPESVKEMQRNWIG 286 (926)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~l~l~~--y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (926)
.+.|++||.+++.+ ..+||||++++ +++.+++.+++.. +|+..++...+|+.
T Consensus 446 ~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~ 501 (810)
T 1wkb_A 446 KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIID 501 (810)
T ss_dssp SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHH
T ss_pred CCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhh
Confidence 36677899998877 68999999985 9999999998776 78878877788873
No 69
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=86.95 E-value=0.23 Score=61.83 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=47.1
Q ss_pred cCccccCCCCeEEeeccccchhhhhhHHHHhhccCCCC-CcHHHHHHHHhhhc
Q 002411 235 DGVSERGGHPVIRKPMRQWMLKITEYADRLLDDLDDLD-WPESVKEMQRNWIG 286 (926)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~l~~y~~~l~~~l~~~~-~p~~~~~~~~~~i~ 286 (926)
+++|+||+.|++.|..+|||++++++++++++.+++.. .|+..++...+||.
T Consensus 394 ~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~ 446 (917)
T 1ffy_A 394 YPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVR 446 (917)
T ss_dssp EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHH
T ss_pred CCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999887 58888888888984
No 70
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=86.91 E-value=0.38 Score=53.85 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
+++.|..|+= |+|. |||||.++.+. ..++++ .|+++++..|
T Consensus 38 ~p~~vy~G~~-PTG~-LHlG~~~~al~---~~~~~q-~g~~~ii~I~ 78 (394)
T 2dlc_X 38 RHLKLYWGTA-PTGR-PHCGYFVPMTK---LADFLK-AGCEVTVLLA 78 (394)
T ss_dssp SCCEEEEEEC-CCSC-CBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCeEEEEEeC-CCCC-ccHHHHHHHHH---HHHHHH-cCCcEEEEEc
Confidence 4445555543 4786 99999876543 444555 7888876665
No 71
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=85.66 E-value=1 Score=51.74 Aligned_cols=42 Identities=19% Similarity=0.121 Sum_probs=34.3
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcCC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 715 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~~ 715 (926)
..++++.+ |+||||++|++ +..++.+. |.++++|-|++..+-
T Consensus 247 ~plil~~~--------g~KLSKR~g~~-~l~~~r~~G~~peAl~~~l~~lG~ 289 (498)
T 2ja2_A 247 LPTVLGEG--------TKKLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGW 289 (498)
T ss_dssp ECCEECSS--------SSBCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred eeeeECCC--------CCcccccCCcc-cHHHHHhCCCCHHHHHHHHHHhCC
Confidence 46777776 99999999994 77777774 899999999987653
No 72
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=85.25 E-value=0.5 Score=55.56 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=34.1
Q ss_pred ceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcCC
Q 002411 665 DFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMGP 715 (926)
Q Consensus 665 hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~~ 715 (926)
..++++.+ |+||||+.|| ++..++.+. |-++++|-|++..+.
T Consensus 349 lpli~~~~--------g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 349 IPLILGSD--------RTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp ECCCBCTT--------SSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred eeeeeCCC--------CCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 45667665 9999999999 578888774 889999999987653
No 73
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=84.42 E-value=0.76 Score=49.90 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=21.4
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.+|.|...+ .++.++=.++.
T Consensus 190 G~KMSKS~~n~I~L~d-----~p~~i~~KI~~ 216 (322)
T 3tzl_A 190 GAKMSKSYQNTIDIFS-----SEKTLKKQISS 216 (322)
T ss_dssp SSBCCGGGTCCCBSSC-----CHHHHHHHHHT
T ss_pred CCcCCCCCCCceecCC-----CHHHHHHHHHh
Confidence 8999999999998775 46667666664
No 74
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=84.36 E-value=2.3 Score=47.33 Aligned_cols=79 Identities=18% Similarity=0.116 Sum_probs=48.3
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
++++++..|+=+..|. ||+||..... .+.++++.-|..|.+..|= + + +.........+.++++...+..
T Consensus 72 g~~~~vy~G~~PTa~~-lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~D-----~-~-~~~~r~~~~~e~i~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGRGPSSES-LHVGHLVPFL---FTKYLQDTFKVPLVIQLTD-----D-E-KFIFKSNLTLEETHNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEECCSSSS-CBSTTHHHHH---HHHHHHHHHCCCEEEEECH-----H-H-HHHHCTTCCHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCC-ccHHHHHHHH---HHHHHHHhcCCCeEeeccC-----h-H-HHhhccCCCHHHHHHHHHHHHH
Confidence 3456666676544465 9999965543 4555777768777664432 2 1 2223312234556677778888
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 141 ~~lA~GlDp~ 150 (393)
T 3hv0_A 141 DIIACGFDPE 150 (393)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHcCCCCc
Confidence 9999998554
No 75
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=84.04 E-value=0.62 Score=50.72 Aligned_cols=62 Identities=23% Similarity=0.426 Sum_probs=38.6
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFS 180 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 180 (926)
|+|. |||||..+.+.. +.+++ .|+++++..| |.|++-. . .++ +..+++...+..++.++|+.
T Consensus 10 PTG~-lHlGn~vg~l~~--~~~lQ--~g~~~~~~Ia-D~ha~~~-~------~~~-e~i~~~~~~~~~~~la~Gld 71 (328)
T 1i6k_A 10 PSGV-ITIGNYIGALRQ--FVELQ--HEYNCYFCIV-DQHAITV-W------QDP-HELRQNIRRLAALYLAVGID 71 (328)
T ss_dssp CCSC-CBHHHHHHTHHH--HHHHT--TTSEEEEEEC-HHHHTTS-C------CCH-HHHHHHHHHHHHHHHHTTCC
T ss_pred CCCc-ccHHHHHHHHHH--HHHHH--cCCcEEEEEe-CceeecC-C------CCH-HHHHHHHHHHHHHHHHhCCC
Confidence 4586 999998887633 33333 3899876665 3343311 0 233 34566677788888888884
No 76
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=83.88 E-value=0.37 Score=54.48 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=15.2
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+-+++..+|.||- .|+..+|=
T Consensus 248 ~~~~lvp~G~DQ~-~~i~l~Rd 268 (432)
T 2ip1_A 248 KTPCLIPCAIDQD-PYFRVCRD 268 (432)
T ss_dssp TCCEEEEEEGGGH-HHHHHHHH
T ss_pred CCceEEEeccCcH-HHHHHHHH
Confidence 3578899999995 56555553
No 77
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=83.74 E-value=0.69 Score=51.52 Aligned_cols=20 Identities=5% Similarity=-0.096 Sum_probs=15.1
Q ss_pred ceeeecccchhhhhHHHhhhh
Q 002411 603 VDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 603 vDl~v~G~D~~~~HLly~rfw 623 (926)
+|+..+|.||. .|+..+|=.
T Consensus 208 a~~vpvG~DQ~-~hl~l~Rdl 227 (392)
T 3jxe_A 208 RCLIPAAIDQD-PYWRLQRDF 227 (392)
T ss_dssp CEEEEEEGGGH-HHHHHHHHH
T ss_pred CceeecccchH-HHHHHHHHH
Confidence 78889999996 566666643
No 78
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=82.70 E-value=0.56 Score=52.35 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
++++++..|+= |+|+.|||||.... ..+.++++.-|..+.+..|=+++ +..... ..+.++++...+.+
T Consensus 76 ~~~~~vy~G~~-PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~~-------~l~~~~-~~e~i~~~~~~~~~ 143 (395)
T 3i05_A 76 GQPFYLYTGRG-PSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDEK-------FYFRNI-PMEQVEAMTTENIK 143 (395)
T ss_dssp TCCEEEEEEEC-CCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHHH-------HHHSCC-CHHHHHHHHHHHHH
T ss_pred CCCeEEEEeec-CCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchHH-------HhcCCC-CHHHHHHHHHHHHH
Confidence 34566666653 56622999997553 34455666668777776553332 222233 34445666677777
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 144 ~~lA~GlDp~ 153 (395)
T 3i05_A 144 DIIAMGFDPE 153 (395)
T ss_dssp HHHTTTCCTT
T ss_pred HHHHcCCCCC
Confidence 8878877443
No 79
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=82.51 E-value=2.7 Score=46.69 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
++++.++.|+ -|+|. |||||..+. .+..+++..-|..+.+..|-++ +......+ .+.++++...+..
T Consensus 80 ~~~~~vysG~-~PTG~-lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~~-------a~~~r~~~-~e~i~~~~~~~~~ 146 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKE-VALEEYITL---EFARYLQDAFNIQVIIQILDDI-------KVLNREAT-INEASKMSNDLMK 146 (386)
T ss_dssp TCCEEEEEEE-CCCSS-CBGGGHHHH---HHHHHHHHHHCCEEEEEECHHH-------HHHTTSCC-HHHHHHHHHHHHH
T ss_pred CCCeEEEecc-CCCCC-ccHHHHHHH---HHHHHHHHhcCCeEEEEeCchH-------HhhcCCCC-HHHHHHHHHHHHH
Confidence 3456777665 47898 999996664 3344566666888877744321 11112233 3446667777888
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 147 ~~lA~GlDp~ 156 (386)
T 3hzr_A 147 YILAFGFNED 156 (386)
T ss_dssp HHHHTCCCGG
T ss_pred HHHHcCCCCc
Confidence 8999999665
No 80
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=82.20 E-value=0.77 Score=50.44 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=38.3
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
|+|. |||||..+.+.. +.+++. |+++++..| |-|++-. ..+|+ ...++...+..++.+.|+..+
T Consensus 13 PTG~-lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~-------~~d~~-~i~~~~~~~~~~~lA~Gldp~ 76 (348)
T 2yy5_A 13 ASGK-QHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSITV-------DFQPQ-ALKQNNFDLVRTLLAVGLDPQ 76 (348)
T ss_dssp CCTT-CBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCHH-HHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCc-ccHHHHHHHHHH--HHHHHh--CCcEEEEEc-ChhhccC-------CCCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 4586 999998876633 334554 788766555 3333311 02333 345566677778888888443
No 81
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=81.42 E-value=2.7 Score=46.79 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
++++++.|+= |+|. |||||..+... ..+++...|++|.+..| |.|++-. ..+.+ .+..+++...+..+
T Consensus 72 ~p~~i~sG~~-PTG~-lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~-~e~i~~~~~~~~~~ 139 (392)
T 3jxe_A 72 RGFFLYTGRG-PSGP-MHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLT-FDDTKRWAYDNILD 139 (392)
T ss_dssp CCCEEEEEEC-CSSC-CBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCC-HHHHHHHHHHHHHH
T ss_pred CCeEEEeccC-CCCc-hhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHhhc-----CCCCC-HHHHHHHHHHHHHH
Confidence 4556666654 4487 99999887642 22344447998888777 5443311 11223 34466667778888
Q ss_pred HHHcCcccc
Q 002411 174 LKSLGFSYD 182 (926)
Q Consensus 174 l~~lgi~~D 182 (926)
+.++|+..+
T Consensus 140 ~lA~GlDp~ 148 (392)
T 3jxe_A 140 IIAVGFDPD 148 (392)
T ss_dssp HHTTCCCTT
T ss_pred HHHhCcCcc
Confidence 899998655
No 82
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=81.39 E-value=0.84 Score=51.52 Aligned_cols=16 Identities=38% Similarity=0.314 Sum_probs=13.3
Q ss_pred c--ccccccCCC-ccCcch
Q 002411 681 A--HKMSKSRGN-VVNPDD 696 (926)
Q Consensus 681 G--~KMSKSkGN-vv~p~e 696 (926)
| +|||||.+| .|...+
T Consensus 298 G~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 298 GAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp EEEEECCTTSSSSCCBTTC
T ss_pred CCccccCCCCCCCeeeccC
Confidence 7 899999999 677654
No 83
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=80.34 E-value=1.1 Score=49.36 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=44.1
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
+.++.|+ -|+|. ||||| +..+.. +.++++ .|+++++..| |.|++-. ...|.++ +..+++...+..++.
T Consensus 36 ~~iy~G~-~PTg~-lHlG~-l~~l~~--~~~lQ~-~G~~~~~~ia-D~~a~~~----~ps~~~~-e~i~~~~~~~~~~~l 103 (364)
T 2cya_A 36 IKGYIGY-EPSGV-AHIGW-LVWMYK--VKDLVE-AGVDFSVLEA-TWHAYIN----DKLGGDM-DLIRAAARIVRRVME 103 (364)
T ss_dssp CEEEEEE-CCCSS-CBTHH-HHHHHH--HHHHHH-TTCEEEEEEC-HHHHHHT----TGGGGCH-HHHHHHHHHHHHHHH
T ss_pred CEEEecc-CCCCC-ccHhH-HHHHHH--HHHHHH-CCCCEEEEEe-CcchhhC----CCCCCCH-HHHHHHHHHHHHHHH
Confidence 3444454 35687 99999 654433 444444 5999887776 4444311 1112233 345566677888999
Q ss_pred HcCccc
Q 002411 176 SLGFSY 181 (926)
Q Consensus 176 ~lgi~~ 181 (926)
++|+..
T Consensus 104 a~G~dp 109 (364)
T 2cya_A 104 AAGVPV 109 (364)
T ss_dssp HTTCCG
T ss_pred HhCCCc
Confidence 999843
No 84
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=79.52 E-value=0.85 Score=50.43 Aligned_cols=27 Identities=33% Similarity=0.147 Sum_probs=19.8
Q ss_pred ccccccc-CCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKS-RGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKS-kGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+||||| .+|.|...+= ++.++=.++.
T Consensus 236 g~KMSKS~~~~~I~L~d~-----p~~i~~Ki~~ 263 (364)
T 2cya_A 236 EVKMSKSKPETAVFVVDS-----DDDIRRKIRK 263 (364)
T ss_dssp -CBCCSSSGGGSCBTTCC-----HHHHHHHHHT
T ss_pred ccccCCCCCCCEeeccCC-----HHHHHHHHHh
Confidence 7999999 6888887664 6667766664
No 85
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=79.40 E-value=1.1 Score=51.39 Aligned_cols=16 Identities=38% Similarity=0.314 Sum_probs=13.2
Q ss_pred c--ccccccCCC-ccCcch
Q 002411 681 A--HKMSKSRGN-VVNPDD 696 (926)
Q Consensus 681 G--~KMSKSkGN-vv~p~e 696 (926)
| .|||||.+| .|...+
T Consensus 345 G~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 345 GAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEEEECCTTSTTCCCBTTC
T ss_pred CCccccCCCCCCCceeecC
Confidence 7 899999999 677654
No 86
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=79.20 E-value=2.8 Score=45.41 Aligned_cols=75 Identities=20% Similarity=0.252 Sum_probs=44.9
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLK 175 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~ 175 (926)
+.+..|+ -|+|. ||+||+ ..+. .+.+++ ..|+++++..| |.|++ + .. ..+++ ...++...+.+++.
T Consensus 33 ~~vy~G~-~PTg~-lHlG~l-~~l~--~~~~lq-~~g~~~~~~i~-D~~a~-~----~d-~~~~~-~i~~~~~~~~~~~~ 98 (323)
T 2cyb_A 33 PRAYVGY-EPSGE-IHLGHM-MTVQ--KLMDLQ-EAGFEIIVLLA-DIHAY-L----NE-KGTFE-EIAEVADYNKKVFI 98 (323)
T ss_dssp CEEEEEE-CCCSC-CBHHHH-HHHH--HHHHHH-HTTCEEEEEEC-HHHHH-H----TT-CCCHH-HHHHHHHHHHHHHH
T ss_pred CEEEECc-CCCCc-chHHHH-HHHH--HHHHHH-HCCCcEEEEEC-CceeE-c----CC-CCCHH-HHHHHHHHHHHHHH
Confidence 4455555 47787 999995 3322 344444 34888776654 22222 1 01 11333 46777888899999
Q ss_pred HcCccccccCc
Q 002411 176 SLGFSYDWNRE 186 (926)
Q Consensus 176 ~lgi~~Dw~~~ 186 (926)
++|+ ||++.
T Consensus 99 a~Gl--dp~k~ 107 (323)
T 2cyb_A 99 ALGL--DESRA 107 (323)
T ss_dssp HTTC--CTTTC
T ss_pred HhCC--Cccce
Confidence 9998 66563
No 87
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=78.95 E-value=1.1 Score=49.86 Aligned_cols=15 Identities=40% Similarity=0.359 Sum_probs=4.1
Q ss_pred ccccccCCC-ccCcch
Q 002411 682 HKMSKSRGN-VVNPDD 696 (926)
Q Consensus 682 ~KMSKSkGN-vv~p~e 696 (926)
.|||||.+| .|...|
T Consensus 265 ~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 265 TKMSASVQNSSIFVND 280 (393)
T ss_dssp --------CCCCBTTC
T ss_pred cCCCCCCCCCeEeccC
Confidence 799999998 666543
No 88
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=78.51 E-value=1.2 Score=49.93 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=43.6
Q ss_pred CCcEEEEcCCCCCCC-CCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSG-AGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFR 171 (926)
Q Consensus 93 ~~k~~v~~~~Pypng-~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 171 (926)
++++.++.|+= |+| . |||||..+. .++.+++..-|..+.+..| |.|.. .....+ .+.++++...+.
T Consensus 99 ~~p~~vy~G~~-PTg~~-lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia-D~~a~------l~~~~~-~e~i~~~~~~~~ 165 (406)
T 3tze_A 99 NRPFYLYTGRG-PSSKT-MHIGHTIPF---LLCKYMQDAFKIRLVIQIT-DDEKF------LWKSMR-LEDAMAYGRENI 165 (406)
T ss_dssp TCCEEEEEEEC-CCSSC-CBGGGHHHH---HHHHHHHHHHTCCEEEEEC-HHHHH------HHSSCC-HHHHHHHHHHHH
T ss_pred CCCeEEEEeeC-CCCCc-ccHHHHHHH---HHHHHHHHhcCCcEEEEee-ChHHH------cCCCCC-HHHHHHHHHHHH
Confidence 45577776654 555 5 999996654 3344456655777766444 32211 011222 344566666777
Q ss_pred HHHHHcCcccc
Q 002411 172 TQLKSLGFSYD 182 (926)
Q Consensus 172 ~~l~~lgi~~D 182 (926)
.++.++|+..+
T Consensus 166 ~~~lA~GlDp~ 176 (406)
T 3tze_A 166 KDIVTLGFDPK 176 (406)
T ss_dssp HHHHTTTCCGG
T ss_pred HHHHHcCCCcc
Confidence 77777777543
No 89
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=78.50 E-value=2.5 Score=46.09 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=23.7
Q ss_pred cccccccCCCccCcchhhhhcCchhhhHHhhhc
Q 002411 681 AHKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 713 (926)
Q Consensus 681 G~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~ 713 (926)
|+|||||.+|.|...+ .++.++=.++.+
T Consensus 203 G~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 203 GRKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp SSCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred ccccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 8899999999998887 788888777753
No 90
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=78.44 E-value=2.2 Score=47.18 Aligned_cols=77 Identities=21% Similarity=0.327 Sum_probs=47.9
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++|+|++|. -|+|. |||||..+.. -.+++...|++|.+..+ |.|-+- -......+..+.++..+..
T Consensus 68 gk~~~v~sG~-~PTG~-lHLGhyv~~~----~~~~lq~~~~~~~~~Ia-D~ha~t------~~~~~~~e~~r~~~~~~~~ 134 (372)
T 3a04_A 68 GERVAVLTGF-MPSGK-FHFGHKLTVD----QLIYLQKNGFKVFVAIA-DAEAFA------VRRIGREEAVRIAVEEYIA 134 (372)
T ss_dssp TCCCEEEEEE-CCCSC-CBHHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHHH------TTCCCHHHHHHHHHHTTHH
T ss_pred CCCCEEEeCc-CCCcH-hHHHHHHHHH----HHHHHHhCCCeEEEEEe-cchhhc------cCCCCCHHHHHHHHHHHHH
Confidence 3556676664 45897 9999987532 24455557999976654 444221 1122233445566677778
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 135 ~~lA~GlDP~ 144 (372)
T 3a04_A 135 NMIALGLDPK 144 (372)
T ss_dssp HHHHHTCCTT
T ss_pred HHHHcCCChH
Confidence 8889999665
No 91
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=78.27 E-value=1.3 Score=49.14 Aligned_cols=26 Identities=31% Similarity=0.188 Sum_probs=19.4
Q ss_pred ccccccC-CCccCcchhhhhcCchhhhHHhhh
Q 002411 682 HKMSKSR-GNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 682 ~KMSKSk-GNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
+|||||. +|.|...+= ++.+|=.++.
T Consensus 250 ~KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp HBGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred hcccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 8999999 788877653 6666666654
No 92
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=78.24 E-value=3.3 Score=46.20 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=11.5
Q ss_pred cccccccCCCc-cCcchhhhhcCchhhhHHhhh
Q 002411 681 AHKMSKSRGNV-VNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~KMSKSkGNv-v~p~eii~~yGaD~lRl~ll~ 712 (926)
|+|||||.+|. |...+= ++.+|=-++.
T Consensus 225 G~KMSKS~~ns~I~L~D~-----p~~i~kKI~k 252 (394)
T 2dlc_X 225 GGKMSASDPNSKIDLLEE-----PKQVKKKINS 252 (394)
T ss_dssp ---------CCSCBTTCC-----HHHHHHHHHH
T ss_pred CCcCCCCCCCCEEeccCC-----HHHHHHHHHH
Confidence 89999999996 877653 5666666664
No 93
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=77.90 E-value=0.66 Score=58.17 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=43.5
Q ss_pred cCccccCCCCeEEe-eccccchhhh--hhHHHHhhccCCCC-CcHHHHHHHHhhh
Q 002411 235 DGVSERGGHPVIRK-PMRQWMLKIT--EYADRLLDDLDDLD-WPESVKEMQRNWI 285 (926)
Q Consensus 235 ~~~~~~~~~~~~~~-~~~~~~l~l~--~y~~~l~~~l~~~~-~p~~~~~~~~~~i 285 (926)
.+.|++||.+++.+ ..+|||++++ ++++.+++.++++. +|+..++...+|+
T Consensus 446 ~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l 500 (967)
T 1wz2_A 446 KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAII 500 (967)
T ss_dssp SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHH
T ss_pred CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhh
Confidence 46788999999888 6999999998 59999999998877 7877887778887
No 94
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=77.86 E-value=1.2 Score=49.59 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=18.3
Q ss_pred c-cccccc-CCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 A-HKMSKS-RGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G-~KMSKS-kGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
| +||||| .+|.|...| .++.++=-++.
T Consensus 266 G~~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 266 GVTKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp CTTCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred CCCccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 6 499999 799997655 34555544443
No 95
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=77.17 E-value=1.5 Score=52.40 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=36.6
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHH-HHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDI-LARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di-~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
+.++.|+ -|+|. ||||| .++.-+ +.+++ ..|++|.+..| |-|++-. .+.|.++ +..+++...+.+++
T Consensus 41 ~~vy~G~-~PTg~-lHLG~---~v~~~~~~~~lQ-~~G~~~~~lIa-D~ha~~~----d~~~~~~-e~i~~~~~~~~~~~ 108 (690)
T 3p0j_A 41 IRCYDGF-EPSGR-MHIAQ---GIFKAVNVNKCT-AAGCEFVFWVA-DWFALMN----DKVGGEL-EKIRIVGRYLIEVW 108 (690)
T ss_dssp EEEEEEE-CCCSC-CBHHH---HHHHHHHHHHHH-HTTEEEEEEEC-CGGGGGG----CTTTTHH-HHHHHHHHHHHHHH
T ss_pred ceEEeee-cCCCc-chhHh---hHHHHHHHHHHH-HCCCcEEEEEe-eeEEEec----CCCcchH-HHHHHHHHHHHHHH
Confidence 4455453 35666 89999 333222 34444 45888876666 5555411 0111112 12334444555566
Q ss_pred HHcCcc
Q 002411 175 KSLGFS 180 (926)
Q Consensus 175 ~~lgi~ 180 (926)
.++|+.
T Consensus 109 lA~GlD 114 (690)
T 3p0j_A 109 KAAGMD 114 (690)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 666663
No 96
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=76.79 E-value=1.5 Score=48.04 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHH
Q 002411 95 KFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 95 k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
++.++.|+ -|+|. ||+||....+ -.+.++++ .|+++.+..| |.|++-. ...|.+ .+..+++...+.+++
T Consensus 40 ~~~vy~G~-~PTg~-lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~-D~~a~~~----~~~~~~-~e~i~~~~~~~~~~~ 108 (348)
T 2j5b_A 40 IFTAYNGF-EPSGR-IHIAQALITV--MNTNNMIE-CGGQMIIYIA-DWFAKMN----LKMNGD-INKIRELGRYFIEVF 108 (348)
T ss_dssp CEEEEEEE-CCCSS-CBHHHHHHHH--HHHHHHHH-TTEEEEEEEC-HHHHHHT----TGGGGC-HHHHHHHHHHHHHHH
T ss_pred CCEEEecc-CCCCC-CchhHHHHHH--HHHHHHHH-cCCcEEEEec-cchhhhC----CCCCCC-HHHHHHHHHHHHHHH
Confidence 34445554 24486 9999943332 23555554 5898877665 2233211 111222 334566777777788
Q ss_pred HHcCcccc
Q 002411 175 KSLGFSYD 182 (926)
Q Consensus 175 ~~lgi~~D 182 (926)
.++|+..+
T Consensus 109 la~Gldp~ 116 (348)
T 2j5b_A 109 KACGINLD 116 (348)
T ss_dssp HHTTCCGG
T ss_pred HHhcCCcc
Confidence 88887543
No 97
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=76.31 E-value=5.2 Score=45.14 Aligned_cols=111 Identities=16% Similarity=0.136 Sum_probs=63.8
Q ss_pred cccCCCchhhhHHHHHHHH-----------hCCCCCCCCC------CCCCCCcEEEEcCCCCCCCCCCCchhhhhhhHHH
Q 002411 60 VKRAYPFHEIEPKWQSYWE-----------NNRTFRTPDE------IDTSKPKFYVLDMFPYPSGAGLHVGHPLGYTATD 122 (926)
Q Consensus 60 ~~~~y~~~~iE~~~~~~W~-----------~~~~f~~~~~------~~~~~~k~~v~~~~Pypng~~lHiGH~~~~~~~D 122 (926)
+...|....|.+...++++ ..+++....+ .-..+++++++.|+=+..|. |||||..+. -
T Consensus 39 l~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTags-LHLGH~v~~---~ 114 (451)
T 3foc_A 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGA-LHLGHLLPF---I 114 (451)
T ss_dssp HHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSC-CBHHHHHHH---H
T ss_pred HHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCC-ccHHHHHHH---H
Confidence 4456666666665555443 4455422110 00133567787776544476 999996654 3
Q ss_pred HHHHHHHHcCCcccccccccccChHHHHHHHHh-CCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 123 ILARLKRMQGYNVLHPMGWDAFGLPAEQYAIET-GTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 123 i~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~-g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
.+.+++..-|..+.+..| .| + +.... ..+ .+.++++...+.+++.++|+..+
T Consensus 115 ~l~~lQ~~~g~~v~I~Ig-----D~-~-a~~~r~~lt-~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 115 FTKYLQDAFKCYVVIQIT-----DD-E-KFLRNRSLS-YAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp HHHHHHHHHTCEEEEEEC-----HH-H-HHHHCTTCC-HHHHHHHHHHHHHHHHTTTCCGG
T ss_pred HHHHHHHccCceEEEEee-----Cc-H-HhhcccCCC-HHHHHHHHHHHHHHHHHcCCCCC
Confidence 345566666887777544 33 1 11222 233 44566777788888999998544
No 98
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=75.72 E-value=2.1 Score=48.33 Aligned_cols=78 Identities=12% Similarity=0.122 Sum_probs=47.8
Q ss_pred CcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 94 PKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 94 ~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
+++++..|+=+..|. |||||....+. +.+++...|+++++..| |.|+.- . ....+ .+.+++++..+..+
T Consensus 101 ~~~~vy~G~dPTag~-LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-~----~~~~t-~e~i~~~~~~~~~~ 169 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDS-MHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-F----KHKLT-INDVKNFARENAKD 169 (432)
T ss_dssp CCCEEEEEECCCSSC-CBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-H----CTTCC-HHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCC-ccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-C----CCCCC-HHHHHHHHHHHHHH
Confidence 456666676544476 99999886542 34566557998887777 433321 0 11133 33456666667778
Q ss_pred HHHcCcccc
Q 002411 174 LKSLGFSYD 182 (926)
Q Consensus 174 l~~lgi~~D 182 (926)
+.++|+..+
T Consensus 170 ~lA~GlDp~ 178 (432)
T 2ip1_A 170 IIAVGFDPK 178 (432)
T ss_dssp HHTTTCCGG
T ss_pred HHHhCCCCC
Confidence 888887544
No 99
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=74.81 E-value=2.9 Score=47.75 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=47.9
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
+++++++.|+=+..|. |||||..+.+. ..++++..|++|++..|=. |+.-- . ..++ +.++++...+..
T Consensus 153 ~~~~~vy~G~dPTag~-LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D~-~a~ig-----d-~lt~-e~i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEA-MHVGHLIPFIF---TKWLQDVFNVPLVIQMTDD-EKYLW-----K-DLTL-DQAYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTC-CBGGGHHHHHH---HHHHHHHHTCCEEEEECHH-HHHHH-----S-SCCH-HHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCC-ccHHHHHHHHH---HHHHHHHhCCcEEEEEecc-eeeec-----C-CCCH-HHHHHHHHHHHH
Confidence 4567777776545576 99999887542 3345555799877766632 22110 1 2333 335666666777
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 221 ~~lA~GlDp~ 230 (477)
T 1r6t_A 221 DIIACGFDIN 230 (477)
T ss_dssp HHHTTCCCTT
T ss_pred HHHHhCCCCC
Confidence 8888887544
No 100
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=73.55 E-value=4.7 Score=43.45 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=19.0
Q ss_pred c-ccccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 A-HKMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G-~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
| +|||||.||.|...+= +|.+|==++.
T Consensus 201 G~~KMSKS~~~~I~L~d~-----~~~i~~KI~~ 228 (314)
T 2zp1_A 201 GEGKMSSSKGNFIAVDDS-----PEEIRAKIKK 228 (314)
T ss_dssp SSSBCCTTTTCSCBTTCC-----HHHHHHHHHH
T ss_pred cccccCCCCcceecCCCC-----HHHHHHHHHh
Confidence 7 7999999999987653 4444444443
No 101
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=72.06 E-value=6.2 Score=43.87 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=13.2
Q ss_pred cCCcccccccccccC
Q 002411 131 QGYNVLHPMGWDAFG 145 (926)
Q Consensus 131 ~G~~V~~~~G~D~~G 145 (926)
.|......+|+|..|
T Consensus 75 ~~~~~~vy~G~~PTg 89 (395)
T 3i05_A 75 SGQPFYLYTGRGPSS 89 (395)
T ss_dssp TTCCEEEEEEECCCS
T ss_pred cCCCeEEEEeecCCC
Confidence 688888999999888
No 102
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=71.17 E-value=2.1 Score=48.42 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=12.9
Q ss_pred eeecccchhhhhHHHhhhh
Q 002411 605 VYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 605 l~v~G~D~~~~HLly~rfw 623 (926)
+..+|.||. .|+..+|=.
T Consensus 290 ~VPvG~DQ~-~hlel~Rdi 307 (451)
T 3foc_A 290 LIASGIEQD-PYFRLARDL 307 (451)
T ss_dssp EEEECTTTH-HHHHHHHHH
T ss_pred eeeeecchH-HHHHHHHHH
Confidence 667899995 576666643
No 103
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=70.54 E-value=2.3 Score=47.21 Aligned_cols=70 Identities=17% Similarity=0.358 Sum_probs=39.0
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
|++|. -|+|. |||||..+.+.. +.+++ .|++|.+..+ |-|.+-. ..++ +..++++..+..++.+.
T Consensus 38 i~sG~-~PTG~-lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt~-------~~~~-~~lr~~~~~~aa~~lA~ 102 (388)
T 3prh_A 38 IFSGI-QPSGS-VTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAITV-------PQDR-LELRKNIRNLAALYLAV 102 (388)
T ss_dssp EEEEE-CCCSC-CBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHT
T ss_pred EEEee-CCCCc-chHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeeec-------CCCH-HHHHHHHHHHHHHHHHh
Confidence 55553 46687 899988776532 22233 4888766554 4444311 1223 23455556666677777
Q ss_pred Ccccc
Q 002411 178 GFSYD 182 (926)
Q Consensus 178 gi~~D 182 (926)
|+..+
T Consensus 103 GlDp~ 107 (388)
T 3prh_A 103 GLDPE 107 (388)
T ss_dssp TCCTT
T ss_pred CCChh
Confidence 77544
No 104
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=69.79 E-value=1.8 Score=47.27 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
|+|. |||||..+.+.+ +.+++. |+++.+..+ |-|.+-. ..++ +..+++...+..++.+.|+..+
T Consensus 15 PTG~-lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~ 78 (341)
T 3sz3_A 15 PSGE-LSIGNYLGALRQ--WQQMQD--DYDCQYCVV-DLHAITV-------RQDP-QALHEATLDALAICLAVGVDPK 78 (341)
T ss_dssp SSSC-CBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCc-ccHHHHHHHHHH--HHHHHh--cCeEEEEEe-cceeEcC-------CCCH-HHHHHHHHHHHHHHHHcCCChh
Confidence 5676 888887775422 334444 466655544 4343311 1223 3455556666667777777444
No 105
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=69.67 E-value=4.3 Score=45.78 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHH
Q 002411 93 KPKFYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRT 172 (926)
Q Consensus 93 ~~k~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~ 172 (926)
++++.+..|+=+..|. |||||....+. +.+++...|+++++..|= .|++-- . ..++ +.+.++...+..
T Consensus 106 ~~~~~vy~G~dPTag~-LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD-~ta~ig-----d-~lt~-e~i~~n~~~~~~ 173 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEA-MHVGHLIPFIF---TKWLQDVFNVPLVIQMTD-DEKYLW-----K-DLTL-DQAYGDAVENAK 173 (437)
T ss_dssp TCCEEEEEEECCCSSC-CBHHHHHHHHH---HHHHHHHHTCCEEEEECH-HHHHHH-----S-SCCH-HHHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCC-ccHHHHHHHHH---HHHHHHHhCCcEEEEEec-ceeeec-----C-CCCH-HHHHHHHHHHHH
Confidence 4567777776545576 99999887542 335555579888776663 222211 1 2333 335666666777
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 174 ~~lA~GlDp~ 183 (437)
T 1r6u_A 174 DIIACGFDIN 183 (437)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHhCCCcc
Confidence 8888887544
No 106
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=68.81 E-value=2.7 Score=45.96 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=16.7
Q ss_pred CCceeeecccchhhhhHHHhhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw 623 (926)
+-+|+..+|.||. .|+..+|=.
T Consensus 151 ~~ad~vpvG~DQ~-~hleltRdi 172 (346)
T 3n9i_A 151 YQTNQVPVGEDQK-QHLELSRDI 172 (346)
T ss_dssp TTCSEECCCGGGH-HHHHHHHHH
T ss_pred hCceEEEeccchH-HHHHHHHHH
Confidence 4789999999996 566666543
No 107
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=67.54 E-value=3.8 Score=44.46 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.1
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+-+|+..+|.||. .|+..+|=
T Consensus 136 ~~~~~vpvG~DQ~-~~iel~Rd 156 (328)
T 1i6k_A 136 YNTDIVPVGEDQK-QHIELTRD 156 (328)
T ss_dssp TTCSEEECCGGGH-HHHHHHHH
T ss_pred hCCCEEecccchH-HHHHHHHH
Confidence 5799999999996 56665543
No 108
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=67.17 E-value=3.3 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=16.2
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+-+|+..+|.||. .|+..+|=
T Consensus 146 ~~a~~vpvG~DQ~-~~lel~Rd 166 (348)
T 2yy5_A 146 YQPDIVPVGNDQK-QHLELTRD 166 (348)
T ss_dssp TCCSEEECCGGGH-HHHHHHHH
T ss_pred hCccEEEecccHH-HHHHHHHH
Confidence 5799999999996 56665653
No 109
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=66.95 E-value=3.5 Score=45.74 Aligned_cols=16 Identities=38% Similarity=0.287 Sum_probs=13.0
Q ss_pred cccccccC---CCccCcch
Q 002411 681 AHKMSKSR---GNVVNPDD 696 (926)
Q Consensus 681 G~KMSKSk---GNvv~p~e 696 (926)
++|||||. ||.|...|
T Consensus 224 ~~KMSKS~~~~~n~I~L~D 242 (388)
T 3prh_A 224 LKKMSKSDPNQKAYITLLD 242 (388)
T ss_dssp TSBCCTTCSSTTSCCBTTC
T ss_pred CCccCCCCCCCCCeeecCC
Confidence 47999999 89997643
No 110
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=65.49 E-value=8.3 Score=42.97 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=12.9
Q ss_pred cCCcccccccccccC
Q 002411 131 QGYNVLHPMGWDAFG 145 (926)
Q Consensus 131 ~G~~V~~~~G~D~~G 145 (926)
.|..+...+|+|..|
T Consensus 98 ~~~p~~vy~G~~PTg 112 (406)
T 3tze_A 98 NNRPFYLYTGRGPSS 112 (406)
T ss_dssp TTCCEEEEEEECCCS
T ss_pred cCCCeEEEEeeCCCC
Confidence 488888889999987
No 111
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=64.74 E-value=8.5 Score=41.84 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=22.3
Q ss_pred c-ccccccCCCccCcchhhhhcCchhhhHHhhhc
Q 002411 681 A-HKMSKSRGNVVNPDDVVTEYGADSLRLYEMFM 713 (926)
Q Consensus 681 G-~KMSKSkGNvv~p~eii~~yGaD~lRl~ll~~ 713 (926)
| +|||||.||.|...+= ++.++=.++.+
T Consensus 192 G~~KMSKS~~n~I~L~d~-----p~~i~~Ki~~a 220 (337)
T 2el7_A 192 GKAKMSKSLGNTIGLLEP-----EESIWQKIQHL 220 (337)
T ss_dssp SSSBCCTTTTCCCBSSSC-----HHHHHHHHHTC
T ss_pred CccccCCCCCCeeeCcCC-----HHHHHHHHHhC
Confidence 7 9999999998887763 77777777653
No 112
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=63.08 E-value=4.2 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=16.1
Q ss_pred CCceeeecccchhhhhHHHhhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rfw 623 (926)
+-+|+..+|.||- .|+..+|=.
T Consensus 199 l~ad~vpgG~DQ~-~~l~l~Rdl 220 (373)
T 3vgj_A 199 LNVDICQLGIDQR-KVNMLAREY 220 (373)
T ss_dssp TTCSEECCBGGGH-HHHHHHHHH
T ss_pred cCCcEEEcchhhH-HHHHHHHHH
Confidence 4689999999995 566656543
No 113
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=61.32 E-value=3.6 Score=45.74 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=38.8
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
.++.|+ -|+|..|||||... + -.+.++++ .|+++++..| |.||+ |-- +..++.....+...+++..+..+
T Consensus 66 ~vy~G~-dPTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg-D~haligdpsg-k~~~R~~~~~e~i~~n~~~i~~~ 138 (392)
T 1y42_X 66 GAYVGI-DPTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG-GSTAKIGDPTG-RLKSRDHLSSSDATMNMTKIHYQ 138 (392)
T ss_dssp EEEEEE-CCCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC-TTTTTTCCCCC------------CHHHHHHHHHHH
T ss_pred EEEEee-cCCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc-CceeEeCCCCC-cchhhccCCHHHHHHHHHHHHHH
Confidence 344443 24564499999773 2 23555654 5999877765 33333 210 01111111223456777888888
Q ss_pred HHHcC
Q 002411 174 LKSLG 178 (926)
Q Consensus 174 l~~lg 178 (926)
+.++|
T Consensus 139 ~~a~~ 143 (392)
T 1y42_X 139 LKKLW 143 (392)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88777
No 114
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=61.15 E-value=2 Score=46.05 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=5.1
Q ss_pred eecceeEeccCCccccccccccccccCCCc
Q 002411 662 KSGDFFVMKDNPNIRLIARAHKMSKSRGNV 691 (926)
Q Consensus 662 ~~~hG~vl~~~~~~~~~~~G~KMSKSkGNv 691 (926)
.| .+++++.+ |+|||||+||+
T Consensus 216 ~H-~pll~~~~--------g~KLSKR~g~~ 236 (298)
T 1nzj_A 216 IH-LPLALNPQ--------GAKLSKQNHAP 236 (298)
T ss_dssp EE-ECBCCC---------------------
T ss_pred EE-eeeeECCC--------CCcccccCCcc
Confidence 45 57776665 99999999998
No 115
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=58.60 E-value=9 Score=43.76 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=34.6
Q ss_pred EeecceeEeccCCccccccccccccccCCCccCcchhhhh-cCchhhhHHhhhcC
Q 002411 661 MKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVTE-YGADSLRLYEMFMG 714 (926)
Q Consensus 661 ~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~~-yGaD~lRl~ll~~~ 714 (926)
+.| ..++++.+ |+||||..|. ++..++.+. |.+++++=|++..+
T Consensus 251 f~H-lpLi~~~~--------g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 251 YAH-LPTVLNEQ--------GEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp EEE-ECCEECTT--------SSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred EEE-ecceeCCC--------CCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 444 56778776 9999999986 566777654 89999999998765
No 116
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=57.80 E-value=12 Score=40.94 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=13.9
Q ss_pred CceeeecccchhhhhHHHhh
Q 002411 602 PVDVYVGGAEHAVLHLLYAR 621 (926)
Q Consensus 602 PvDl~v~G~D~~~~HLly~r 621 (926)
-+|+..+|.||- .|+..+|
T Consensus 186 ~~~~~~~G~DQ~-~~i~l~R 204 (348)
T 2j5b_A 186 GIDICQLGIDQR-KVNMLAI 204 (348)
T ss_dssp CCSEECCBGGGH-HHHHHHH
T ss_pred CCcEEEeccChH-HHHHHHH
Confidence 578889999995 5555555
No 117
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=56.80 E-value=9.8 Score=45.48 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=14.7
Q ss_pred CCceeeecccchhhhhHHH
Q 002411 601 SPVDVYVGGAEHAVLHLLY 619 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly 619 (926)
+.+|+-++|.||...|++-
T Consensus 519 l~aDi~~gG~DQ~~~~~La 537 (690)
T 3p0j_A 519 LSVSHVISTSLDGHINAFA 537 (690)
T ss_dssp TTCSEEEECSTTTTTTHHH
T ss_pred cCCCEEecccccHHHHHHH
Confidence 4689999999997666543
No 118
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=55.55 E-value=5.5 Score=44.03 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=25.6
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCccccccc
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMG 140 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G 140 (926)
.|..|+- |+|. |||||.++.+. ..++++ .|+++++..|
T Consensus 37 ~vy~G~~-PTG~-lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 37 KIYWGTA-TTGK-PHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp EEEEEEC-CSSC-CBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred EEEeCcC-CCCc-ccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 4445554 6786 99999876543 444554 7888877665
No 119
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=51.19 E-value=10 Score=41.44 Aligned_cols=27 Identities=41% Similarity=0.382 Sum_probs=20.7
Q ss_pred cc-cccccCCCccCcchhhhhcCchhhhHHhhh
Q 002411 681 AH-KMSKSRGNVVNPDDVVTEYGADSLRLYEMF 712 (926)
Q Consensus 681 G~-KMSKSkGNvv~p~eii~~yGaD~lRl~ll~ 712 (926)
|+ |||||.||.|...+= ++.++=.++.
T Consensus 212 G~~KMSKS~~n~I~L~d~-----p~~i~~Ki~~ 239 (351)
T 1yi8_B 212 GQAKMSKSLGNAIALGDS-----ADEVARKVMG 239 (351)
T ss_dssp SSSCCCTTTTCCCBTTCC-----HHHHHHHHHT
T ss_pred CccccCCCCCCeecCCCC-----HHHHHHHHHh
Confidence 76 999999998876653 6777766664
No 120
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=50.02 E-value=14 Score=40.66 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=40.3
Q ss_pred EEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHH-HHHH----H
Q 002411 98 VLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNI-NRFR----T 172 (926)
Q Consensus 98 v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~-~~~~----~ 172 (926)
++.|+ -|+|. |||||.+..+. .+.++++ .|+++.+..| |.|++-. .+.|.+++ ..+++. ..+. .
T Consensus 36 vy~G~-~PTg~-lHlG~yl~~l~--~~~~lQ~-~G~~~~~~ia-D~ha~~~----~~~g~~~e-~i~~~~~~~~~~~~~~ 104 (375)
T 2cyc_A 36 HYIGF-EISGY-IHLGTGLMAGA--KIADFQK-AGIKTRVFLA-DWHSWIN----DKLGGDLE-VIQEVALKYFKVGMEK 104 (375)
T ss_dssp EEEEE-CCCSC-CBHHHHHHHHH--HHHHHHH-TTCBCEEEEC-HHHHHHT----TGGGGCHH-HHHHHHHHTHHHHHHH
T ss_pred EEeCC-CCCCC-cCchHHHHHHH--HHHHHHH-CCCcEEEEec-CcEEEcC----CCCCCCHH-HHHHHHHHHHHHHHHH
Confidence 44443 35586 99999555333 2555554 5998877666 2233211 11233333 233344 4444 7
Q ss_pred HHHHcCcccc
Q 002411 173 QLKSLGFSYD 182 (926)
Q Consensus 173 ~l~~lgi~~D 182 (926)
++.++|+..+
T Consensus 105 ~~la~G~dp~ 114 (375)
T 2cyc_A 105 SIEVMGGDPK 114 (375)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHhCCCcc
Confidence 8999998655
No 121
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=47.45 E-value=7.8 Score=42.76 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=13.0
Q ss_pred eeeecccchhhhhHHHhhhh
Q 002411 604 DVYVGGAEHAVLHLLYARFW 623 (926)
Q Consensus 604 Dl~v~G~D~~~~HLly~rfw 623 (926)
.+..-|.||. .|+..+|=.
T Consensus 210 ~~VPVG~DQ~-~hleltRdi 228 (372)
T 3a04_A 210 VVVPVGADQD-PHLRLTRDL 228 (372)
T ss_dssp EEEEEEGGGH-HHHHHHHHH
T ss_pred eecccchhhH-HHHHHHHHH
Confidence 3445599996 687777743
No 122
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=46.30 E-value=14 Score=40.09 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=15.6
Q ss_pred CCceeeecccchhhhhHHHhhh
Q 002411 601 SPVDVYVGGAEHAVLHLLYARF 622 (926)
Q Consensus 601 ~PvDl~v~G~D~~~~HLly~rf 622 (926)
+-+|+..+|.||. .|+..+|=
T Consensus 142 ~~ad~vpvG~DQ~-~hlel~Rd 162 (341)
T 3sz3_A 142 YGAHQVPVGSDQK-QHLELARD 162 (341)
T ss_dssp TTCSEECCCGGGH-HHHHHHHH
T ss_pred cCCCEEEeccchH-HHHHHHHH
Confidence 4688999999995 56666654
No 123
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=43.04 E-value=9.4 Score=41.63 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=40.6
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHHHHHHhCCCchHHHHHHHHHHHHHHHHcCcccc
Q 002411 104 YPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLRNINRFRTQLKSLGFSYD 182 (926)
Q Consensus 104 ypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 182 (926)
-|+|. |||||..+.+.+ +.+++ .++++.+..+ |-|.+-. ..+| +..++++..+..++.+.|+..+
T Consensus 23 ~PTG~-lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t~-------~~~~-~~~~~~~~~~~~~~lA~GlDp~ 87 (346)
T 3n9i_A 23 QPSGE-LTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAITA-------RQDP-ALLRKRTLDTLALYLACGIDPK 87 (346)
T ss_dssp CSCSC-CBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTTS-------CCCH-HHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCCc-ccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCcc
Confidence 46798 999998876422 22232 4788766554 4444311 2233 4456667778888889999766
No 124
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=37.94 E-value=14 Score=41.38 Aligned_cols=67 Identities=27% Similarity=0.340 Sum_probs=36.9
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
|+|+.|||||... --.+.+++ ..|+++++..|= .||+ |.- +..++..-..+...++...+++++.++
T Consensus 39 PTg~sLHlGh~v~---l~~l~~lQ-~~G~~~i~lIgd-~ta~igdpsg-k~~~R~~l~~e~i~~n~~~~~~q~~~~ 108 (419)
T 2ts1_A 39 PTADSLHIGHLAT---ILTMRRFQ-QAGHRPIALVGG-ATGLIGDPSG-KKSERTLNAKETVEAWSARIKEQLGRF 108 (419)
T ss_dssp CSSSSCBGGGHHH---HHHHHHHH-HTTCEEEEEECT-TGGGTCCCTT-CSSCCCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcC-ceeEecCCCC-ccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 4454499999662 22355555 469999887763 3333 210 000111112345667788888877764
No 125
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=35.27 E-value=14 Score=41.36 Aligned_cols=74 Identities=22% Similarity=0.288 Sum_probs=40.6
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccCh---HHHHHHHHhCCCchHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGL---PAEQYAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Gl---pie~~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
.+..|+= |+|+.|||||... --.+.+++ ..|+++++..|= .||+ |. -+..++..-..+...++...++++
T Consensus 34 ~iy~G~d-PTg~sLHlGh~v~---l~~~~~lQ-~~G~~~~~lIgd-~ta~igdp~-gk~~~R~~l~~e~i~~n~~~~~~~ 106 (420)
T 1jil_A 34 TLYCGAD-PTADSLHIGHLLP---FLTLRRFQ-EHGHRPIVLIGG-GTGMIGDPS-GKSEERVLQTEEQVDKNIEGISKQ 106 (420)
T ss_dssp EEEEEEC-CSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEECT-TGGGTCCCT-TCSSCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEeeC-CCCCCccHHHHHH---HHHHHHHH-HCCCcEEEEEcC-ceeEecCCC-ccccccccCCHHHHHHHHHHHHHH
Confidence 3444432 4454499999662 22355555 469999887763 3333 21 000011111234566788888888
Q ss_pred HHHc
Q 002411 174 LKSL 177 (926)
Q Consensus 174 l~~l 177 (926)
+.++
T Consensus 107 ~~~~ 110 (420)
T 1jil_A 107 MHNI 110 (420)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8877
No 126
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=34.97 E-value=15 Score=39.69 Aligned_cols=75 Identities=24% Similarity=0.344 Sum_probs=38.3
Q ss_pred EEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHH--HHHHhCCCchHHHHHHHHHHHHHH
Q 002411 97 YVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ--YAIETGTHPKITTLRNINRFRTQL 174 (926)
Q Consensus 97 ~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~--~a~~~g~~~~~~~~~~~~~~~~~l 174 (926)
.++.|+= |+|..|||||... --.+.+++ ..|+++++..| |-|++-... +-.++..-..+..+++.+.+++++
T Consensus 35 ~vy~G~~-PTg~slHlGh~l~---l~~~~~lQ-~~g~~~~~~i~-D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~ 108 (322)
T 2yxn_A 35 ALVCGFD-PTADSLHLGHLVP---LLCLKRFQ-QAGHKPVALVG-GATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQV 108 (322)
T ss_dssp EEEEEEC-CSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEEC-TTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEeec-CCCCcccHHHHHH---HHHHHHHH-HcCCcEEEEEc-cceeeecCCCCcccccccCCHHHHHHHHHHHHHHH
Confidence 3444432 4464499999662 22344554 45898877766 333431100 000111112345667777777777
Q ss_pred HHc
Q 002411 175 KSL 177 (926)
Q Consensus 175 ~~l 177 (926)
.++
T Consensus 109 ~~~ 111 (322)
T 2yxn_A 109 APF 111 (322)
T ss_dssp GGG
T ss_pred HHH
Confidence 665
No 127
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=31.68 E-value=20 Score=40.21 Aligned_cols=68 Identities=28% Similarity=0.346 Sum_probs=34.9
Q ss_pred CCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHH-HHHHhCCCchHHHHHHHHHHHHHHHHc
Q 002411 105 PSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ-YAIETGTHPKITTLRNINRFRTQLKSL 177 (926)
Q Consensus 105 png~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~-~a~~~g~~~~~~~~~~~~~~~~~l~~l 177 (926)
|+|+.||||| +.-+. .+.++++ .|+++++..| |.||+-..- +..++.....+...++...+++++.++
T Consensus 41 PTg~sLHLGh-lv~l~--~l~~lQ~-~G~~~i~lIg-D~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 41 PTAPSLHAGH-LVPLL--TLRRFQR-AGHRPIVLAG-GATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp CSSSSCBGGG-HHHHH--HHHHHHH-TTCEEEEEEC-HHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHH-HHHHH--HHHHHHH-CCCcEEEEEc-CcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 5563399999 33333 3555554 6999988776 333331100 000000011234566777777765554
No 128
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=29.40 E-value=24 Score=39.60 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCCCCCchhhhhhhHHHHHHHHHHHcCCcccccccccccChHHHH--HHHHhCCCchHHHHHHHHHHHHH
Q 002411 96 FYVLDMFPYPSGAGLHVGHPLGYTATDILARLKRMQGYNVLHPMGWDAFGLPAEQ--YAIETGTHPKITTLRNINRFRTQ 173 (926)
Q Consensus 96 ~~v~~~~Pypng~~lHiGH~~~~~~~Di~~Ry~r~~G~~V~~~~G~D~~Glpie~--~a~~~g~~~~~~~~~~~~~~~~~ 173 (926)
+.++.|+= |+|+.|||||... --.+.+++. .|+++++..| |.|++-... +..++.....+...+++..+..+
T Consensus 38 ~~vy~G~d-PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg-D~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q 111 (432)
T 1h3f_A 38 LTVKLGAD-PTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIG-DFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQ 111 (432)
T ss_dssp CEEEEEEC-TTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC-CCC---------------------HHHHHHHHHH
T ss_pred cEEEEccc-CCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEc-cceEEecCCCCcccccccCCHHHHHHHHHHHHHH
Confidence 34444543 4552399999762 233555554 5999877776 344431110 11111111133455566667766
Q ss_pred HHHcCc
Q 002411 174 LKSLGF 179 (926)
Q Consensus 174 l~~lgi 179 (926)
+. -|+
T Consensus 112 l~-~~l 116 (432)
T 1h3f_A 112 AG-KIL 116 (432)
T ss_dssp HT-TTS
T ss_pred HH-HHh
Confidence 64 444
No 129
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=28.20 E-value=74 Score=36.51 Aligned_cols=45 Identities=20% Similarity=0.354 Sum_probs=34.3
Q ss_pred EEeecceeEeccCCccccccccccccccCCCccCcchhhh-hcCchhhhHHhhhcC
Q 002411 660 VMKSGDFFVMKDNPNIRLIARAHKMSKSRGNVVNPDDVVT-EYGADSLRLYEMFMG 714 (926)
Q Consensus 660 v~~~~hG~vl~~~~~~~~~~~G~KMSKSkGNvv~p~eii~-~yGaD~lRl~ll~~~ 714 (926)
.+.| +.++++.+ |+|+||..|.. ...+..+ .|=+++|.=|++..+
T Consensus 259 ~y~H-~pli~~~~--------g~kLSKR~~~~-~v~~~~~~G~lPeAl~NyLalLG 304 (512)
T 4gri_A 259 IYCH-LPMVMGND--------GQKLSKRHGST-ALRQFIEDGYLPEAIINYVTLLG 304 (512)
T ss_dssp EEEE-ECCCBCTT--------SSBCCTTTSCC-BHHHHHHHTCCHHHHHHHHHHSS
T ss_pred eEEe-cchhcccc--------ccccCcccccc-cHHHHHHcCCChHHHHHHHHHhC
Confidence 3455 67888876 99999998864 5566655 489999998887665
No 130
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.00 E-value=36 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=22.8
Q ss_pred ccccCCCCcccCchhhc---cCccccCCCCeEE
Q 002411 218 VNWCPALGTVLANEEVV---DGVSERGGHPVIR 247 (926)
Q Consensus 218 v~wc~~~~t~ls~~ev~---~~~~~~~~~~~~~ 247 (926)
.+=|-+|++.++++|++ .-+|+.||..+..
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~ 35 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIF 35 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEE
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEE
Confidence 35589999999999996 2368899987654
No 131
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=20.87 E-value=31 Score=20.38 Aligned_cols=10 Identities=20% Similarity=1.016 Sum_probs=8.1
Q ss_pred CccCceEeCC
Q 002411 503 EPIPVVFLDG 512 (926)
Q Consensus 503 ~PIPv~~~~~ 512 (926)
-|+|++||+.
T Consensus 4 kpvpiiycnr 13 (21)
T 8tfv_A 4 KPVPIIYCNR 13 (26)
T ss_dssp CCCCCEEEEG
T ss_pred CcccEEEEcC
Confidence 4899999954
Done!