Query 002412
Match_columns 926
No_of_seqs 434 out of 2152
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 23:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2194 Aminopeptidases of the 100.0 3E-132 6E-137 1167.5 62.4 770 65-918 33-834 (834)
2 PRK10199 alkaline phosphatase 100.0 3.6E-26 7.7E-31 253.4 29.0 260 86-367 30-345 (346)
3 PF04389 Peptidase_M28: Peptid 99.9 2.8E-28 6.1E-33 248.5 9.1 170 180-350 1-179 (179)
4 KOG2195 Transferrin receptor a 99.9 9.9E-22 2.1E-26 234.4 16.6 204 159-372 335-552 (702)
5 KOG3946 Glutaminyl cyclase [Po 99.7 7.4E-17 1.6E-21 169.7 19.7 249 82-362 46-334 (338)
6 COG2234 Iap Predicted aminopep 99.7 3.1E-16 6.7E-21 181.7 14.5 191 161-362 183-392 (435)
7 TIGR03176 AllC allantoate amid 99.4 6.1E-13 1.3E-17 153.4 14.6 127 87-247 3-141 (406)
8 PRK08262 hypothetical protein; 99.4 1E-12 2.3E-17 154.8 16.6 170 43-246 2-201 (486)
9 PRK09133 hypothetical protein; 99.4 6.8E-12 1.5E-16 147.4 18.5 151 82-261 32-203 (472)
10 PRK12890 allantoate amidohydro 99.4 4.9E-12 1.1E-16 146.0 16.3 128 85-246 7-145 (414)
11 PRK12891 allantoate amidohydro 99.4 7.3E-12 1.6E-16 144.8 16.1 127 84-244 7-145 (414)
12 PRK09290 allantoate amidohydro 99.3 1.2E-11 2.7E-16 142.7 16.4 130 84-247 4-145 (413)
13 PRK13590 putative bifunctional 99.3 7.6E-12 1.6E-16 150.7 15.0 128 85-245 179-321 (591)
14 TIGR01879 hydantase amidase, h 99.3 1.2E-11 2.5E-16 142.5 15.5 126 88-247 2-139 (401)
15 PRK13799 unknown domain/N-carb 99.3 8.6E-12 1.9E-16 150.2 14.4 127 85-245 179-321 (591)
16 PRK08596 acetylornithine deace 99.3 4.6E-11 9.9E-16 138.4 17.6 144 87-262 13-178 (421)
17 PRK12893 allantoate amidohydro 99.3 3.6E-11 7.8E-16 138.6 15.8 130 84-247 7-148 (412)
18 PRK06133 glutamate carboxypept 99.3 8.1E-11 1.8E-15 135.9 18.5 145 85-262 35-197 (410)
19 PRK12892 allantoate amidohydro 99.3 4.5E-11 9.8E-16 137.8 16.2 129 84-247 7-146 (412)
20 PRK07473 carboxypeptidase; Pro 99.3 9.7E-11 2.1E-15 133.9 18.3 149 84-263 8-174 (376)
21 PRK08588 succinyl-diaminopimel 99.3 6.8E-11 1.5E-15 134.6 16.1 140 86-261 1-161 (377)
22 PRK07906 hypothetical protein; 99.2 6.1E-11 1.3E-15 137.4 14.3 127 90-247 2-154 (426)
23 TIGR01910 DapE-ArgE acetylorni 99.2 1.4E-10 3E-15 132.1 15.5 145 91-262 2-167 (375)
24 PRK07907 hypothetical protein; 99.2 2.3E-10 4.9E-15 133.7 17.2 144 85-262 16-184 (449)
25 TIGR01880 Ac-peptdase-euk N-ac 99.2 2.3E-10 5E-15 131.4 16.5 148 82-260 4-173 (400)
26 PRK07338 hypothetical protein; 99.2 2.7E-10 5.9E-15 130.9 17.0 157 86-262 16-190 (402)
27 PRK09104 hypothetical protein; 99.2 2.6E-10 5.6E-15 133.8 16.2 146 85-261 15-190 (464)
28 PRK08201 hypothetical protein; 99.2 4E-10 8.7E-15 131.8 16.5 147 85-262 12-183 (456)
29 PRK06446 hypothetical protein; 99.2 3.7E-10 7.9E-15 131.5 15.8 128 87-248 2-151 (436)
30 PRK04443 acetyl-lysine deacety 99.2 3.8E-10 8.1E-15 127.5 15.2 133 85-262 4-148 (348)
31 TIGR01893 aa-his-dipept aminoa 99.2 3.7E-10 8.1E-15 133.0 15.7 136 86-262 3-165 (477)
32 PRK13983 diaminopimelate amino 99.2 6.6E-10 1.4E-14 127.2 17.3 150 87-260 5-180 (400)
33 PRK13013 succinyl-diaminopimel 99.2 6.3E-10 1.4E-14 128.8 17.3 152 86-262 13-188 (427)
34 COG4882 Predicted aminopeptida 99.1 6.8E-10 1.5E-14 121.0 15.4 175 162-370 178-365 (486)
35 PF05450 Nicastrin: Nicastrin; 99.1 8.5E-10 1.8E-14 117.9 15.8 167 180-346 1-200 (234)
36 PF09940 DUF2172: Domain of un 99.1 1.5E-09 3.3E-14 120.5 17.6 180 167-366 122-308 (386)
37 PRK06915 acetylornithine deace 99.1 1.2E-09 2.6E-14 126.5 17.0 156 86-260 16-192 (422)
38 PRK07079 hypothetical protein; 99.1 9.5E-10 2E-14 129.3 16.2 149 84-261 14-190 (469)
39 PRK06837 acetylornithine deace 99.1 1.1E-09 2.4E-14 127.1 16.5 145 85-245 18-184 (427)
40 KOG2275 Aminoacylase ACY1 and 99.1 1.1E-09 2.4E-14 122.4 15.2 123 111-263 49-193 (420)
41 PRK05469 peptidase T; Provisio 99.1 9.1E-10 2E-14 127.0 15.2 125 87-244 2-184 (408)
42 PRK07522 acetylornithine deace 99.1 1.2E-09 2.5E-14 124.7 15.5 141 87-261 4-165 (385)
43 PRK13381 peptidase T; Provisio 99.1 1.3E-09 2.8E-14 125.6 15.8 125 89-246 3-184 (404)
44 TIGR01883 PepT-like peptidase 99.1 6.6E-10 1.4E-14 125.8 13.1 128 88-246 1-146 (361)
45 TIGR01892 AcOrn-deacetyl acety 99.1 1.3E-09 2.7E-14 123.3 14.9 135 92-261 2-156 (364)
46 PRK15026 aminoacyl-histidine d 99.1 2E-09 4.3E-14 127.0 17.1 138 84-262 7-171 (485)
47 PRK13007 succinyl-diaminopimel 99.1 2E-09 4.2E-14 121.4 16.0 133 86-261 6-155 (352)
48 COG1363 FrvX Cellulase M and r 99.1 1.1E-08 2.3E-13 114.9 21.5 225 87-365 2-348 (355)
49 PRK07205 hypothetical protein; 99.1 1.5E-09 3.2E-14 126.8 14.9 127 85-247 9-164 (444)
50 PRK06156 hypothetical protein; 99.1 3.5E-09 7.5E-14 126.2 18.2 136 85-261 44-213 (520)
51 PRK07318 dipeptidase PepV; Rev 99.1 1.6E-09 3.5E-14 127.2 14.8 127 86-248 13-167 (466)
52 PRK00466 acetyl-lysine deacety 99.0 2.1E-09 4.6E-14 121.2 15.0 129 86-263 9-149 (346)
53 PRK08652 acetylornithine deace 99.0 3.4E-09 7.4E-14 119.0 14.9 130 87-261 2-143 (347)
54 PRK05111 acetylornithine deace 99.0 5.3E-09 1.1E-13 119.4 16.0 128 87-247 5-157 (383)
55 PF01546 Peptidase_M20: Peptid 99.0 2.1E-09 4.6E-14 109.6 11.5 165 183-361 1-188 (189)
56 TIGR01882 peptidase-T peptidas 99.0 4.3E-09 9.4E-14 121.7 15.2 126 87-245 3-187 (410)
57 PRK13009 succinyl-diaminopimel 99.0 4.3E-09 9.3E-14 119.7 14.6 137 88-260 3-162 (375)
58 TIGR03106 trio_M42_hydro hydro 99.0 3.4E-08 7.3E-13 111.6 20.7 148 195-360 180-339 (343)
59 PRK08651 succinyl-diaminopimel 99.0 9.1E-09 2E-13 117.9 16.1 148 85-263 4-173 (394)
60 TIGR01886 dipeptidase dipeptid 99.0 6.1E-09 1.3E-13 122.5 14.7 125 86-248 12-166 (466)
61 COG0624 ArgE Acetylornithine d 99.0 8.3E-09 1.8E-13 119.0 15.5 145 87-261 13-180 (409)
62 PRK08554 peptidase; Reviewed 99.0 8.5E-09 1.9E-13 120.3 15.6 141 88-263 2-166 (438)
63 PRK13004 peptidase; Reviewed 98.9 1.2E-08 2.7E-13 117.3 16.0 136 86-261 14-171 (399)
64 TIGR01902 dapE-lys-deAc N-acet 98.9 1.1E-08 2.3E-13 115.1 13.8 125 92-263 2-138 (336)
65 TIGR01246 dapE_proteo succinyl 98.9 1.6E-08 3.5E-13 114.9 14.6 134 91-260 3-159 (370)
66 TIGR01900 dapE-gram_pos succin 98.9 1.9E-08 4.1E-13 114.9 14.7 134 93-262 2-170 (373)
67 KOG2526 Predicted aminopeptida 98.9 8.1E-08 1.8E-12 107.0 17.8 197 161-362 192-416 (555)
68 PRK09961 exoaminopeptidase; Pr 98.9 1.5E-07 3.2E-12 106.6 20.4 152 195-363 162-333 (344)
69 TIGR03107 glu_aminopep glutamy 98.9 2E-07 4.3E-12 105.6 21.4 150 197-364 176-342 (350)
70 TIGR01887 dipeptidaselike dipe 98.8 2.2E-08 4.8E-13 117.2 13.9 123 87-246 2-153 (447)
71 TIGR01891 amidohydrolases amid 98.8 6.8E-08 1.5E-12 109.8 14.5 132 91-262 3-151 (363)
72 TIGR03320 ygeY M20/DapE family 98.8 9.5E-08 2.1E-12 109.8 15.2 123 86-246 12-156 (395)
73 TIGR03526 selenium_YgeY putati 98.8 1.2E-07 2.5E-12 109.2 15.8 122 87-246 13-156 (395)
74 PRK09864 putative peptidase; P 98.7 5.7E-07 1.2E-11 101.9 20.0 148 197-363 173-341 (356)
75 PRK08737 acetylornithine deace 98.7 1.8E-07 3.8E-12 106.8 13.4 130 86-261 5-155 (364)
76 PLN02693 IAA-amino acid hydrol 98.5 1.8E-06 3.9E-11 101.0 16.0 122 88-247 48-183 (437)
77 PLN02280 IAA-amino acid hydrol 98.5 3.2E-06 6.9E-11 99.9 16.7 134 89-258 95-243 (478)
78 COG4187 RocB Arginine degradat 98.5 7.8E-07 1.7E-11 99.9 10.8 158 83-264 4-209 (553)
79 COG4310 Uncharacterized protei 98.3 3.2E-06 7E-11 91.3 11.4 171 178-366 177-356 (435)
80 KOG2276 Metalloexopeptidases [ 97.9 0.0001 2.2E-09 82.7 13.6 141 85-246 14-179 (473)
81 PF05343 Peptidase_M42: M42 gl 97.8 6.3E-05 1.4E-09 83.5 9.3 133 197-342 132-282 (292)
82 KOG2657 Transmembrane glycopro 97.3 0.0015 3.4E-08 75.3 11.7 187 161-349 156-374 (596)
83 PF04114 Gaa1: Gaa1-like, GPI 96.3 0.22 4.8E-06 59.6 19.3 185 161-367 2-229 (504)
84 COG2195 PepD Di- and tripeptid 95.7 0.019 4E-07 66.7 6.9 60 198-260 143-203 (414)
85 COG1473 AbgB Metal-dependent a 95.2 0.39 8.4E-06 55.7 15.3 125 102-261 24-164 (392)
86 PRK02813 putative aminopeptida 88.7 1.4 3E-05 51.9 8.4 141 195-347 230-415 (428)
87 PTZ00371 aspartyl aminopeptida 86.2 4.8 0.0001 48.0 11.1 157 195-361 247-453 (465)
88 PRK02256 putative aminopeptida 77.6 3.2 6.9E-05 49.3 5.3 47 194-244 255-301 (462)
89 KOG3566 Glycosylphosphatidylin 71.9 41 0.00089 40.7 12.2 93 161-264 119-228 (617)
90 PRK12821 aspartyl/glutamyl-tRN 61.3 2.8E+02 0.0061 33.0 16.0 33 581-614 316-350 (477)
91 PF10190 Tmemb_170: Putative t 44.8 2.1E+02 0.0046 27.4 9.7 50 420-470 31-80 (105)
92 PF05656 DUF805: Protein of un 35.7 2.8E+02 0.006 26.2 9.4 13 571-583 64-76 (120)
93 KOG3533 Inositol 1,4,5-trispho 35.5 1.3E+03 0.029 31.5 17.0 20 444-463 2261-2280(2706)
94 TIGR02921 PEP_integral PEP-CTE 33.9 1E+03 0.022 29.6 19.4 27 474-500 148-174 (952)
95 PF12911 OppC_N: N-terminal TM 32.5 48 0.001 27.2 3.1 35 652-686 9-43 (56)
96 PF10337 DUF2422: Protein of u 31.4 5.8E+02 0.013 30.4 13.1 31 586-616 188-218 (459)
97 PRK08651 succinyl-diaminopimel 27.7 1.1E+02 0.0023 35.1 6.0 56 306-366 338-393 (394)
98 PRK08126 hypothetical protein; 26.5 1.2E+03 0.025 27.9 15.7 53 181-234 355-409 (432)
99 PF05297 Herpes_LMP1: Herpesvi 26.4 22 0.00047 39.3 0.0 13 847-859 322-334 (381)
100 PRK07522 acetylornithine deace 26.3 1.6E+02 0.0035 33.6 7.1 74 276-364 311-384 (385)
101 PF05297 Herpes_LMP1: Herpesvi 25.3 24 0.00051 39.0 0.0 6 556-561 169-174 (381)
102 PF11947 DUF3464: Protein of u 23.2 1.1E+02 0.0024 31.2 4.3 11 38-48 58-68 (153)
103 PRK11007 PTS system trehalose( 23.0 1.4E+03 0.03 27.6 14.8 36 584-619 303-338 (473)
104 PRK08596 acetylornithine deace 21.4 1.5E+02 0.0032 34.7 5.6 56 306-366 363-418 (421)
105 PF06781 UPF0233: Uncharacteri 20.2 1.6E+02 0.0035 27.2 4.3 21 49-69 36-56 (87)
No 1
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.6e-132 Score=1167.49 Aligned_cols=770 Identities=31% Similarity=0.519 Sum_probs=667.7
Q ss_pred hcccCCCCCCC--ccccCCCCCCHHHHHHHHHHHHhcCCCCCCCHHHH-HHHHHHHHHHHHhccccCCc-eeEEEEEEec
Q 002412 65 YQYEHMPPPLT--ADQAGKRGFSEFEAIKHVKALTELGPHPVGSDALD-RALQYVFAAAQKIKETKHWE-VDVEVDFFHA 140 (926)
Q Consensus 65 ~~~~~lP~~~~--~~~~~~~~fs~erA~~~L~~L~~igpr~vGS~~~~-~a~~yL~~~l~~ig~~~~~~-~~ve~d~~~~ 140 (926)
+.+.++|.|++ .++..+++|+++||++++.+++++|||++||++|+ .+++|+.+|+++++++++.+ +++|+|.+..
T Consensus 33 ~~~~~~~~pl~~~~e~~~~~~f~~~rA~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~ 112 (834)
T KOG2194|consen 33 YLFDHLPEPLTQPQEQTLPSQFSEARALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSA 112 (834)
T ss_pred HHHhhccccCCCcchhcCchhhHHHHHHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeec
Confidence 44555555554 44445789999999999999999999999999998 99999999999999877654 4677776554
Q ss_pred cCCccccccccc--ccccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHcc
Q 002412 141 KSGANRLVSGAF--MGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWA 218 (926)
Q Consensus 141 ~~g~~~~~gg~~--~~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~ 218 (926)
+|.+ ++++.+|++.+||++|+.+|+ +.++.++|++||+||||++|||+||++|||+|||++|++.+..
T Consensus 113 --------sg~~~~~~~~~~Y~~i~NIvVki~~k~--~~~~~~lLlnaHfDSvpt~~gAtDDg~~va~mLe~lRv~s~~~ 182 (834)
T KOG2194|consen 113 --------SGSFILEGMTLVYQNISNIVVKISPKN--GNDKNALLLNAHFDSVPTGPGATDDGSGVASMLEALRVLSKSD 182 (834)
T ss_pred --------cceeeehhhhheeeeeeeEEEecCCCC--CCccceeeeeccccccCCCCCCCcchhHHHHHHHHHHHhhcCC
Confidence 3333 678899999999999999984 3445699999999999999999999999999999999999988
Q ss_pred CCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCCCCCCcceeecCCChhHHHHHHHHccCCCCcchhhh
Q 002412 219 HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQD 298 (926)
Q Consensus 219 ~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~~ 298 (926)
...+|+|+|+||++||.+++|||+|++||||+++++++||||++|+||++.+||+||++|+++.|.++++||+++++++|
T Consensus 183 ~~l~~~vVFLfNgaEE~~L~gsH~FItQH~w~~~~ka~INLea~GsGGreiLFQagp~~wl~k~Y~~~~phPf~stlgee 262 (834)
T KOG2194|consen 183 KLLTHSVVFLFNGAEESGLLGSHAFITQHPWSKNIKAVINLEAAGSGGREILFQAGPNHWLLKAYLQAAPHPFASTLGEE 262 (834)
T ss_pred CcccccEEEEecCcccchhhhcccceecChhhhhhheEEeccccCcccceeEEecCCchHHHHHHHhhCCCchhhhhHHH
Confidence 78899999999999999999999999999999999999999999999999999999977999999999999999999999
Q ss_pred hcccCCCCCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc
Q 002412 299 LFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASSTSLPKGNAMEKE 378 (926)
Q Consensus 299 ~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La~~~~l~~~~~~~~~ 378 (926)
+||+|+|||||||++|++++|+||+|+|+..|++.|||++|.++++.++++||+|+|++++++.++|+ ++.+ .
T Consensus 263 ~Fq~g~IpSdTDfrif~eyg~l~GLD~A~~~Ng~vYHTk~D~~~~i~~gs~q~tGen~L~~v~~lan~-el~~------~ 335 (834)
T KOG2194|consen 263 LFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGYVYHTKYDGIQYIPPGSLQHTGENILALVRSLANS-ELDN------S 335 (834)
T ss_pred hhhcCcCccccchHHHHHhCCcccceeeeeeccceEEeecccccccCcchhhhhhhHHHHHHHHHhch-hhcc------c
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 5532 3
Q ss_pred cCCCCCCeEEeeccCceEEEEechhHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002412 379 GKTVHETAVYFDILGTYMVLYRQGFANMLHNSVIVQSLLIWTASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFI 458 (926)
Q Consensus 379 ~~~~~~~~VyFd~~G~~~v~y~~~~~~~l~~~v~~~~l~l~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~ 458 (926)
++.+++ +||||++|++|+.|+++++++||+.++ +.++ ....+++...+++++++++.+++++++++++++++|++
T Consensus 336 ~~~~~g-~vyfdv~g~~~~~y~~~~~~iLNi~i~---~~i~-l~~~~~g~~~~~~f~~~~~~~i~s~~~~~~l~~~~a~~ 410 (834)
T KOG2194|consen 336 TERSKG-TVYFDVVGKYFLAYSESTGVILNITIC---ISIW-LMSLRSGSSQLGKFILACLLQILSIVVAIGLPVLVALF 410 (834)
T ss_pred cccCCC-ceehhhhhhhhheeehhhhhhhhhhhh---hhhh-hhhhcccchhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455667 999999999999999999999993322 2222 33444444458899999999999999999999999999
Q ss_pred hccCCCCCcceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 002412 459 LPQISSSPVPYVANPWLAVGLFAAPAFLGALTGQHLGYIILKAYLANMFSKRMQLSPIVQADLIKLEAERWLFKAGFLQW 538 (926)
Q Consensus 459 ~~~~~~~~~~~~s~~~l~igly~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~w 538 (926)
++.++ .+|+||++||+++|||.||+++|+.++|.++... .+ +.++ ..++.+++++|+ +|
T Consensus 411 l~~v~-l~~sw~s~p~l~~~ly~~p~~~gl~~~~~~y~~~----~~-----~~~~--------~~~~~~ql~~h~---~l 469 (834)
T KOG2194|consen 411 LDWVG-LPLSWFSNPWLLLGLYYLPSLFGLAILQALYAKR----SK-----RHSL--------EYLQHDQLLLHS---LL 469 (834)
T ss_pred hhccc-ccceeecchHHHHHHHHhHHHHHhhHHHHHHHhh----cc-----cccc--------chhhHHHHHHHH---HH
Confidence 99994 6999999999999999999999999999873211 11 1111 113556777886 78
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 002412 539 LILLALGNFYKIGSTFIALFWLVPPAFAYGFLEATLTPVRFPRPLKLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFD 618 (926)
Q Consensus 539 ~ll~~~~t~~~i~S~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~p~~gR~g 618 (926)
++|++++|+++|||+|++++|+++|+++ ++.++...+|.++..|..++++|++.|+.+.+|.+++++.+|+|||||+|
T Consensus 470 ~~l~~~~t~y~I~S~y~~~~~~~~~v~~--~~~~~~~~l~~~~~~~~~~~~i~~~~p~~~~ay~~~~~~~~fipm~Gr~g 547 (834)
T KOG2194|consen 470 SILLIIMTYYGIRSAYLPLLLLLFYVIS--YLLNTLTILHLCGTLYLITLLICQVGPFLFAAYSTYSLVRTFIPMMGRFG 547 (834)
T ss_pred HHHHHHheecccchhHHHHHHHHHHHHH--HHHhhceeeccCCceeeeeeeeeehHhHHHHHHHHHHHHHeeeccccccC
Confidence 8889999999999999999999999999 55778888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCC-CcceEEEEE
Q 002412 619 RNPGGTPEWLGNVILAVFIAVVLCLTLVYLLSYVHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSEDT-ARAVNVVHV 697 (926)
Q Consensus 619 ~~~~~~pd~l~d~~ia~~~a~~~~l~~~~l~P~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~pf~~~~-~~r~~~~h~ 697 (926)
.+. ||| .+||.++++++.+.++|++|++|+||+++.++.+++.++.+++.+++|.++|||++++ +||+.++|+
T Consensus 548 ~~~--nPd----~~i~~~~~~~~~l~~~f~i~l~~~fr~~~~i~~~l~~I~~~~~~i~~T~~~fPy~~~~~~~r~~~lH~ 621 (834)
T KOG2194|consen 548 NAS--NPD----LSISFLNAFGANLIVGFLIPLVHLFRRSKSIILGLFGITAVILIIASTSIGFPYRPKTTVQRVPVLHV 621 (834)
T ss_pred CCC--Cch----HHHHHHHHHHHHhhHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHhcCCcCCccccccceeEEEEec
Confidence 855 997 8999999999999999999999999999999998988888888778899999999875 579999999
Q ss_pred EeccCCCCCC---CCCcceeeccccCCC--------CchHHH---HhccCccccCCCccccccccceeeeeeeecCCCCc
Q 002412 698 VDASGKFGGK---QEPSSFIALYSTTPG--------KLTKEV---EQIKEGFVCGRDNVVDFVTLSMEYGCLTYDGTEGG 763 (926)
Q Consensus 698 ~~~~~~~d~~---~d~~~~~~l~~~~~~--------~l~~~~---~~c~~e~~Cg~~~~~~~~~~p~y~~~~~~~~~~~~ 763 (926)
+|++|+++|. +|+++++.+.|.... ++++++ .+|+.+++||+ |+|+ |.+.+.+++
T Consensus 622 ~rtf~~~~~~~~~~ds~~~i~~~D~r~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---------p~y~--w~~~~~~~~ 690 (834)
T KOG2194|consen 622 RRTFYDRDGTSSQNDSGYFINSQDRRGAEVLPFTKSNLTDLSSVQADCDDEMMCGM---------PVYN--WIKPREQSL 690 (834)
T ss_pred ccceecccCceeecccceeeeecccccccCCcchhhcccccccccccccccccCCc---------eeee--ccccCccce
Confidence 9999999966 788888887765432 233443 56899999999 7998 999999999
Q ss_pred ccCCCCCce-eeccCccccccccccCCCceEEEEEEeCCCCcEEEEEec---eeecceeeecCCcccccCCCCCCCCCcE
Q 002412 764 WSQSDVPTI-HVESEGFGIMDTKGNDNGRITKVSIDMKGSVRWSLAIDA---EEIEDFTFKEGSEELVPRDEKSGMDGWH 839 (926)
Q Consensus 764 W~p~~~P~l-~~~~~~~~~~~~~~~~~~~~~r~~f~~~g~~~~sl~i~p---~~i~~wSf~~~~~~~~~~~~~~~~~~~~ 839 (926)
|+|+++|.. +...+ ++++++ +..++++.|++|++.|++||++||+| +++.+|||.+. + ..+ + ..+|
T Consensus 691 ~vp~~~~v~~~~~~~-l~l~sk-~~~~~~~~r~~~~i~~~d~~s~~i~p~~d~~~~~wsf~~~---~--~~~--~-~~~~ 760 (834)
T KOG2194|consen 691 WVPNPEPVIGPYPPN-LKLLSK-TSLDNGNLRYEFSITGTDHISLFISPLNDVKVLDWSFTTS---P--LTE--N-KTPY 760 (834)
T ss_pred EecCCccccCCCCce-EEEeec-cccCCCceEEEEEEeccCceEEEEEecCCceEEEEeccCC---c--ccc--c-CCce
Confidence 999987632 33333 444444 54557789999999999999999999 59999999644 3 333 2 2269
Q ss_pred EEEEEcC-CCCceEEEEEEEeccCCcccccccccccCCCCeEEEe------ccccCCCHHHHHHHhcCCCccccccCCCC
Q 002412 840 IIQFSGG-KNAVSKFDLDLYWAKNSTESYHNANRKEKQRPLLKLR------TDFDRLTPKTERVLSKLPAWCSLFGKSTS 912 (926)
Q Consensus 840 ~i~~s~G-~~~P~~F~l~l~~~~~~~~~~~~~~~~~~~~p~~~l~------~~~~~~t~~~~~~l~~fP~wa~~~gk~~~ 912 (926)
+||++|| ++.|++||||+++. ++.+++| +|++ +|.+++||++++|+++||+||..++|++|
T Consensus 761 ~i~~~yg~~~~p~~F~lel~~~-----------~~~~~v~-~k~~~~~h~~~~~~~~t~~~~~~~~~lP~~~~~~~~~~~ 828 (834)
T KOG2194|consen 761 HIYFSYGLDSTPLNFWLELEKE-----------EGVTDVP-FKLGVSAHYIHDLELITPEYKEFLETLPSWAATVDWSTS 828 (834)
T ss_pred EEEEEeecCCCCceEEEEEeec-----------cCccCCc-eEEeeeeeeccchhhcCHHHHHHHHhCCchhhccccccc
Confidence 9999999 89999999999998 5578888 8888 47889999999999999999999999999
Q ss_pred cccccc
Q 002412 913 PQTLSF 918 (926)
Q Consensus 913 p~~l~~ 918 (926)
+....|
T Consensus 829 ~~~~~~ 834 (834)
T KOG2194|consen 829 YESWIF 834 (834)
T ss_pred hhheeC
Confidence 987654
No 2
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.95 E-value=3.6e-26 Score=253.40 Aligned_cols=260 Identities=20% Similarity=0.261 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccc-cccccc
Q 002412 86 EFEAIKHVKALTE-LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL-IYSDLN 163 (926)
Q Consensus 86 ~erA~~~L~~L~~-igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~-~y~~~~ 163 (926)
.+-|.+++++|+. +++|++||+++.++++||.++|+++|. +++.+.|..... .... .+..+ ......
T Consensus 30 ~~~a~~~~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~------~v~~q~f~~~~~-~~~~----~g~~~~~~~~g~ 98 (346)
T PRK10199 30 GDFANTQARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGY------QSDIRTFNSRYI-YTAR----DNRKNWHNVTGS 98 (346)
T ss_pred cchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCC------ceEeeeccccce-eecc----cccccccCCccc
Confidence 5567778888876 889999999999999999999999984 333333321000 0000 00000 011457
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC--------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEE
Q 002412 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (926)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (926)
|||++++|+ .++.|+++||+|||+. .+||+||++|||+|||++|.|++. +++++|+|++
T Consensus 99 nVIa~~~G~-----~~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~ 171 (346)
T PRK10199 99 TVIAAHEGK-----APQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVA 171 (346)
T ss_pred eEEEEECCC-----CCCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEE
Confidence 999999885 3468999999999852 379999999999999999999864 4788999999
Q ss_pred eCCcCCCCcchhHHhhcCCc--cCCceEEEEeccCCCCCCcceeecCCC-hhHH-----HHHHHHccCCCCcchh-----
Q 002412 230 NTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEAMGIGGKSGLFQAGPH-PWAV-----ENFAAAAKYPSGQVTA----- 296 (926)
Q Consensus 230 ~~~EE~gl~GS~~f~~~h~~--~~~v~a~iNLD~~G~gG~~~lfq~g~~-~~li-----~~~~~~a~~p~~~~l~----- 296 (926)
+++||.|+.||+.|+++.+. .+++.++||+|+++.+ ....+..|.+ +..+ +...+.+ ...|..+.
T Consensus 172 ~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a-~~~g~~~~~~~~~ 249 (346)
T PRK10199 172 TSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIA-RRHGIAATTNPGL 249 (346)
T ss_pred ECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHH-HHcCCccccCCCc
Confidence 99999999999999976543 4689999999999874 4344554442 2211 1111221 12222221
Q ss_pred hhhcccCCCCCCCChHHHhhcCCCeEEEEEe-------------------eCCCCCCC-CCCCCcCCCCH-------HHH
Q 002412 297 QDLFASGAITSATDFQVYKEVAGLSGLDFAY-------------------TDKSAVYH-TKNDKLDLLKP-------GSL 349 (926)
Q Consensus 297 ~~~f~~g~ips~TD~~~F~~~~GIPgld~a~-------------------~~~~~~YH-T~~Dt~d~id~-------~sl 349 (926)
+..|..| ....|||.+|.+ .|||.+.+.. +..+..|| |.+|+.++++. ..+
T Consensus 250 ~~~~p~g-~~~rSDH~~F~~-~GIP~l~~~a~n~~~g~~d~~~q~~~~~~~~~g~~~h~~~~d~~~~l~~~~pgri~~~~ 327 (346)
T PRK10199 250 NKNYPKG-TGCCNDAEVFDK-AGIPVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRC 327 (346)
T ss_pred cccccCC-CcCCcccHHHHh-cCCCeEEeeccccccCCcccceecccCccCCCCccccCcCcchHHHHHHhcchHHHHHH
Confidence 1223233 235799999999 9999998842 12355789 89999999987 356
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 002412 350 QHLGENMLAFLLQAASST 367 (926)
Q Consensus 350 q~~g~~~l~lv~~La~~~ 367 (926)
....+.++.++.+||++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~ 345 (346)
T PRK10199 328 RDVVRIMLPLVKELAKAS 345 (346)
T ss_pred HhHHHHHHHHHHHHhccC
Confidence 677889999999999863
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.95 E-value=2.8e-28 Score=248.49 Aligned_cols=170 Identities=31% Similarity=0.481 Sum_probs=131.0
Q ss_pred CEEEEeeeccccc------CCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhc-CCccCC
Q 002412 180 NAILVSSHIDTVF------AAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ-HPWSTT 252 (926)
Q Consensus 180 ~~VLl~AH~DSv~------~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~-h~~~~~ 252 (926)
++|+|+|||||++ .++||+||++|||+|||+||.|++.+.+++++|+|+|+++||.|+.||++|+++ +.+.++
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~~~~~~~ 80 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHDHEELDN 80 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHHHCHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhhhccccc
Confidence 4799999999988 899999999999999999999999777889999999999999999999999963 346689
Q ss_pred ceEEEEeccCCCCCCcceeecCC-ChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChHHHhhcCCCeEEEEEeeC-C
Q 002412 253 IRVAIDLEAMGIGGKSGLFQAGP-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTD-K 330 (926)
Q Consensus 253 v~a~iNLD~~G~gG~~~lfq~g~-~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~-~ 330 (926)
+.++||+|++|.+++....+..+ .++.++.+.+...++.+..+..+.......+..+||.+|.. .|||++.+.... .
T Consensus 81 ~~~~inlD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sD~~~F~~-~gip~~~~~~~~~~ 159 (179)
T PF04389_consen 81 IAAVINLDMIGSGDPTVYSEGSPSLPSRLEAYLSSFKQPYGSSLGPDVPPEKPTFGGSDHYPFSK-AGIPAVTLSSTDGY 159 (179)
T ss_dssp EEEEEEECSSBSSSSEEEEEEGGGHHHHHHHHHHHHHHHHHCHTSSECEEEESSTTSSTCHHHHT-TT-EEEEEEESSSS
T ss_pred ceeEEeccccccCcccceeeeeccccchhhhhhhhhhhhhhcccccccccccCCCCCCCcHhhhc-CCEeEEEEEecCCC
Confidence 99999999999988877776554 23434444333223333322333333334567899999997 999999999887 7
Q ss_pred CCCCCCCCCCcCCCCHHHHH
Q 002412 331 SAVYHTKNDKLDLLKPGSLQ 350 (926)
Q Consensus 331 ~~~YHT~~Dt~d~id~~slq 350 (926)
.+.|||+.||++++++++||
T Consensus 160 ~~~~Ht~~Dt~~~~~~~~l~ 179 (179)
T PF04389_consen 160 NPYYHTPEDTPDNLDPDTLQ 179 (179)
T ss_dssp GTTTTSTT-SGGGC-HHHH-
T ss_pred CCCCCCcccChhhcCCccCC
Confidence 78999999999999999987
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.87 E-value=9.9e-22 Score=234.44 Aligned_cols=204 Identities=22% Similarity=0.316 Sum_probs=159.4
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHH---ccCCCCccEEEEEeCCcCC
Q 002412 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQ---WAHGFKNAVIFLFNTGEEE 235 (926)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~---~~~~p~~~I~Flf~~~EE~ 235 (926)
-...+||+++|+|+ ++++++|+|++|.|||. .||.|+++|++.|+|++|.+.. .|++|+|+|+|++|+|||.
T Consensus 335 ~~ki~NIig~I~Gs---~epD~~ViigahrDSw~--~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWdAeEf 409 (702)
T KOG2195|consen 335 ETKIQNIIGKIEGS---EEPDRYVIIGAHRDSWT--FGAIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWDAEEF 409 (702)
T ss_pred eeeeeeEEEEEecC---cCCCeEEEEeccccccc--cCCcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEccchhc
Confidence 34789999999997 57999999999999995 8899999999999999999865 6899999999999999999
Q ss_pred CCcchhHHhhcCC--ccCCceEEEEeccCCCCCCcceeecCCChhHHHHH---HHHccCCCCcchhhhhcccCCCCCCCC
Q 002412 236 GLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENF---AAAAKYPSGQVTAQDLFASGAITSATD 310 (926)
Q Consensus 236 gl~GS~~f~~~h~--~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~---~~~a~~p~~~~l~~~~f~~g~ips~TD 310 (926)
|+.||..|+++|. ...++.++||+|+++.+....-.+ .+|.+.+.. .+..++|........+ .....+||
T Consensus 410 GliGStE~~E~~~~~L~~~av~yin~d~~~~~~~~l~~~--~~PlL~~li~~~~k~~~~p~~~~~~~~v---~~~g~~Sd 484 (702)
T KOG2195|consen 410 GLLGSTEWAEEYLKNLKSRAVVYINVDNAVLGDYTLHVK--TTPLLTDLIEEAAKSVLSPDKGDQSNRV---LSLGGGSD 484 (702)
T ss_pred cccccHHHHHHHHHHhhheeEEEEeccccccCCceeEEe--cCccHHHHHHHHHhccCCCCccccceeE---eccCCCCc
Confidence 9999999998885 357889999999999875433333 345444333 3444555543211111 12378999
Q ss_pred hHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCC----CH--HHHHHHHHHHHHHHHHHHcCCCCCCC
Q 002412 311 FQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLL----KP--GSLQHLGENMLAFLLQAASSTSLPKG 372 (926)
Q Consensus 311 ~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~i----d~--~slq~~g~~~l~lv~~La~~~~l~~~ 372 (926)
|..|..+.|||+++++|....+.|||.+||++.+ |+ ..+..++.+....+..+++.+.+|-+
T Consensus 485 ~~~F~~~~GIpsv~~~f~~~yP~yhs~~dt~~~~~k~~D~~~~~~~~~a~~~~~~~l~l~~d~llPfd 552 (702)
T KOG2195|consen 485 YASFLQFAGIPSVDFAFNRTYPFYHSTYDTYEWLDKLLDPKFKQHLAAAGVLGLELLILADDPLLPFD 552 (702)
T ss_pred chhhccccCcceeeeeecCCcceeecccCcHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCccccCc
Confidence 9999999999999999999889999999995544 33 34455666666677777776666643
No 5
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.4e-17 Score=169.71 Aligned_cols=249 Identities=19% Similarity=0.310 Sum_probs=183.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002412 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (926)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~ 161 (926)
+.-+..|.++.|..+- -||.+||+++.++++||.+.++.++ + .+|.|.|.... . ..+.+
T Consensus 46 ~~s~~~~~~~~L~p~l--v~Rvpgs~g~~~vr~~i~~~l~~l~----w--~ve~~~f~~~t--------p-----~g~~~ 104 (338)
T KOG3946|consen 46 PDSDWNRLWENLLPIL--VPRVPGSPGSRQVRRFIIQHLRNLG----W--AVETDAFTDNT--------P-----LGTRN 104 (338)
T ss_pred CCCCHHHHHHhhhhhh--ccccCCCCccHHHHHHHHHHHHhcC----c--eeeeccccccC--------c-----ceeee
Confidence 3456778888877775 4899999999999999999999996 2 57777765521 1 11346
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccCC----CCCCCchhHHHHHHHHHHHHHHcc----CCCCccEEEEEeCCc
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----EGAGDCSSCVAVMLELARAMSQWA----HGFKNAVIFLFNTGE 233 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s----pGA~Dd~sgva~~LE~ar~L~~~~----~~p~~~I~Flf~~~E 233 (926)
..||++++.+. ..+++++.|||||.-.. .||.|.+..||.||++++.+.+.- ..++-++.++|++||
T Consensus 105 f~nii~tl~~~-----A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 105 FNNLIATLDPN-----ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred eeeEEEecCCC-----cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 78999999764 57889999999996431 689999999999999999998732 245678999999999
Q ss_pred C--------CCCcchhHHhhcC------C-----ccCCceEEEEeccCCCCCCcc--eeecCCChhHHH--HH----HHH
Q 002412 234 E--------EGLNGAHSFVTQH------P-----WSTTIRVAIDLEAMGIGGKSG--LFQAGPHPWAVE--NF----AAA 286 (926)
Q Consensus 234 E--------~gl~GS~~f~~~h------~-----~~~~v~a~iNLD~~G~gG~~~--lfq~g~~~~li~--~~----~~~ 286 (926)
| ..+.||++.+++. + ..+++...+-+|-.|+.+++. .|.. ++.|..+ .. .++
T Consensus 180 EAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~p~f~~~~~~-t~~wF~Rl~~iE~~l~~~ 258 (338)
T KOG3946|consen 180 EAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPNPTFYNFFPN-TDRWFHRLQSIEGELALL 258 (338)
T ss_pred HHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCChhHhhcCcc-hHHHHHHHHHHHHHHHHH
Confidence 9 3679999998762 1 124677778888888877654 2222 2344422 11 111
Q ss_pred ---ccCCCCcchhhhhcccCCCC--CCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 002412 287 ---AKYPSGQVTAQDLFASGAIT--SATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 361 (926)
Q Consensus 287 ---a~~p~~~~l~~~~f~~g~ip--s~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~ 361 (926)
..++. -...|+.|... -+.||.+|.+ +|+|.+.+.-.....+|||+.|+..++|..+..|++..+-.++.
T Consensus 259 g~l~s~r~----~~~~Fq~~~~~~~veDDHiPFlr-rgVPVLHlI~~pFPsvWHt~dD~e~nldy~tt~~~~lilr~Fv~ 333 (338)
T KOG3946|consen 259 GLLASHRL----PPRYFQPGGLSSVVEDDHIPFLR-RGVPVLHLIPVPFPSVWHTPDDNERNLDYATTDNLALIIRVFVA 333 (338)
T ss_pred HHHHhccC----CchhccccCccccccCCcchhhh-cCCceEEecCCCCcccccCccchhhcCCchhHHHHHHHHHHHHH
Confidence 12221 11234443221 3789999998 99999999988888899999999999999999998887776665
Q ss_pred H
Q 002412 362 Q 362 (926)
Q Consensus 362 ~ 362 (926)
+
T Consensus 334 e 334 (338)
T KOG3946|consen 334 E 334 (338)
T ss_pred H
Confidence 4
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.67 E-value=3.1e-16 Score=181.75 Aligned_cols=191 Identities=25% Similarity=0.298 Sum_probs=135.7
Q ss_pred ccceEEEEEcCCCC-------CcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCc
Q 002412 161 DLNHIVLRIQPKYA-------SEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (926)
Q Consensus 161 ~~~NVi~~i~g~~~-------~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~E 233 (926)
...|+++++++... ....++.+++++|+|+++.++||+||++|+|++||++|.|+.. +|+++|+|+++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~--~p~~~v~f~~~~aE 260 (435)
T COG2234 183 TSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGN--PPKRTVRFVAFGAE 260 (435)
T ss_pred EEEEEeeeeecccccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcC--CCCceEEEEEecch
Confidence 44566666655410 1246788999999999999999999999999999999999975 49999999999999
Q ss_pred CCCCcchhHHhhcCC--ccCCceEEEEeccCCCCCCcceeecCC---C--hhHHHHHHHHccCCCCcchhhhhcccCCCC
Q 002412 234 EEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSGLFQAGP---H--PWAVENFAAAAKYPSGQVTAQDLFASGAIT 306 (926)
Q Consensus 234 E~gl~GS~~f~~~h~--~~~~v~a~iNLD~~G~gG~~~lfq~g~---~--~~li~~~~~~a~~p~~~~l~~~~f~~g~ip 306 (926)
|.|+.||++|+.++. ..+++.++||+||.|..++...++... + +.......+...++... .+. ....
T Consensus 261 E~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~ 334 (435)
T COG2234 261 ESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSPNPTPTLILYGNGLERVPPGLRAVAALIGRPVDP-----STV-QDFD 334 (435)
T ss_pred hhcccccHHHHhcCCcchhhhhheEEecccccCCCCCcceEEeccCCccccchHHHHHHHHHhhccc-----ccc-CCCC
Confidence 999999999996665 356788899999999976333233221 1 11222222222222211 011 1234
Q ss_pred CCCChHHHhhcCCCeEEEEEeeCC-----CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Q 002412 307 SATDFQVYKEVAGLSGLDFAYTDK-----SAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQ 362 (926)
Q Consensus 307 s~TD~~~F~~~~GIPgld~a~~~~-----~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~ 362 (926)
..+||.+|.. +|+|++.+..... ..++||..|+ ++ +..+++..+..+.+.+..
T Consensus 335 ~~sd~~~f~~-~gi~~~~~~~~~~~~~~~~~~~~t~~d~-~~-d~~~~~~~~~~~~~~~~~ 392 (435)
T COG2234 335 PRSDHYPFTE-AGIPSLFLFSGAPGGVEAVAWGHTAADT-DK-DLSTLDQHGDAVAATLVL 392 (435)
T ss_pred CCCcchhhhh-cCCcceeeeecCCccccccccccccccc-cc-chhhhcccchhhhhhhhh
Confidence 5799999998 9999998875433 3489999999 88 888888877555444433
No 7
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.45 E-value=6.1e-13 Score=153.39 Aligned_cols=127 Identities=20% Similarity=0.126 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccc
Q 002412 87 FEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIY 159 (926)
Q Consensus 87 erA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y 159 (926)
.|.+++|.+|++||. |...|++..++++|+.++++++|. ++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl------~v~~D----------------------- 53 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGL------ETRFD----------------------- 53 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCC------EEEEc-----------------------
Confidence 588999999999853 455688999999999999999983 45554
Q ss_pred cccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCC---
Q 002412 160 SDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG--- 236 (926)
Q Consensus 160 ~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~g--- 236 (926)
...||+++++|. +++.+.|++++|+||||. .|.-|+..||++.||++|.|++.+.+|+++|.++++.+||.+
T Consensus 54 -~~gN~~~~~~g~---~~~~~~i~~gsHlDtv~~-gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~ 128 (406)
T TIGR03176 54 -DVGNLYGRLVGT---EFPEETILTGSHIDTVVN-GGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFP 128 (406)
T ss_pred -CCCcEEEEecCC---CCCCCeEEEeccccCCCC-CCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCC
Confidence 457999999996 345689999999999994 689999999999999999999998899999999999999976
Q ss_pred --CcchhHHhhcC
Q 002412 237 --LNGAHSFVTQH 247 (926)
Q Consensus 237 --l~GS~~f~~~h 247 (926)
+.||+.+..+.
T Consensus 129 ~~~~Gs~~~~g~~ 141 (406)
T TIGR03176 129 YVFWGSKNIFGLA 141 (406)
T ss_pred cccccHHHHhCCC
Confidence 99999998533
No 8
>PRK08262 hypothetical protein; Provisional
Probab=99.45 E-value=1e-12 Score=154.77 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCccccCCCCCCHHHHHHHHHHHHhcCCCCCCCHHH-------HHHHHH
Q 002412 43 RSGLAWTVAFAAFVYATYGVYYYQYEHMPPPLTADQAGKRGFSEFEAIKHVKALTELGPHPVGSDAL-------DRALQY 115 (926)
Q Consensus 43 ~~~~~~l~~~ll~~~~~~~v~~~~~~~lP~~~~~~~~~~~~fs~erA~~~L~~L~~igpr~vGS~~~-------~~a~~y 115 (926)
|++++.|+.+++++..+++++++.|++.+..+++ ..+-.++.+++.+.|++|.+|. -+.+.+++ .+..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~lv~i~-S~s~~~~~~~~~~~~~~~~~~ 78 (486)
T PRK08262 2 RRILLGLLALLLLLAAVLAVRTFRFKSRQIDVPA--VAPVAVDEDAAAERLSEAIRFR-TISNRDRAEDDAAAFDALHAH 78 (486)
T ss_pred cchHHHHHHHHHHHHHhhhheeEEcccCCCCccc--cCCCcCCHHHHHHHHHHhcccc-eeccCCCCcccHHHHHHHHHH
Confidence 5666677777777888899999999877665542 2356789999999999999973 23332221 357888
Q ss_pred HHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC--
Q 002412 116 VFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-- 193 (926)
Q Consensus 116 L~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-- 193 (926)
|.+++++++. .++.. .. +..|+++.++|+ +...+.|++.+|+|+||.
T Consensus 79 L~~~~~~~g~------~~~~~--~~--------------------~~~~vv~~~~g~---~~~~~~ill~gH~DvVp~~~ 127 (486)
T PRK08262 79 LEESYPAVHA------ALERE--VV--------------------GGHSLLYTWKGS---DPSLKPIVLMAHQDVVPVAP 127 (486)
T ss_pred HHHhChhhhc------eeEEE--EE--------------------CCccEEEEEECC---CCCCCeEEEECcccccCCCC
Confidence 8888887763 22221 11 225888888775 123378999999999974
Q ss_pred ---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhc
Q 002412 194 ---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 194 ---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~ 246 (926)
++|+.||++|++++|.+++.|.+.+.+++++|.|+|..+||.|..|++.+++.
T Consensus 128 ~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~ 201 (486)
T PRK08262 128 GTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAEL 201 (486)
T ss_pred CCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHH
Confidence 36999999999999999999998777788999999999999988899988743
No 9
>PRK09133 hypothetical protein; Provisional
Probab=99.39 E-value=6.8e-12 Score=147.35 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002412 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (926)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~ 161 (926)
.+.+.+++.+.|++|.+|. -+.+..++.++.+|+.++|+++|.+. ..+++ +.. ..+
T Consensus 32 ~~~~~~~~~~~l~~Lv~i~-S~s~~~~e~~~~~~l~~~l~~~G~~~---~~~~~--~~~------------------~~~ 87 (472)
T PRK09133 32 PTADQQAARDLYKELIEIN-TTASTGSTTPAAEAMAARLKAAGFAD---ADIEV--TGP------------------YPR 87 (472)
T ss_pred cchhHHHHHHHHHHHhccC-CCCCCcchHHHHHHHHHHHHHcCCCc---eEEEe--ccC------------------CCC
Confidence 4688999999999999972 22223345689999999999998421 01221 110 014
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCC
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 221 (926)
..||+++++|+ .+.+.|++++|+|+||. ++|+.||++|++++|++++.|.+.+..+
T Consensus 88 ~~nli~~~~g~----~~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~ 163 (472)
T PRK09133 88 KGNLVARLRGT----DPKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKP 163 (472)
T ss_pred ceeEEEEecCC----CCCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCC
Confidence 57999999775 23467999999999984 4899999999999999999999877788
Q ss_pred CccEEEEEeCCcC-CCCcchhHHhhcCCccCCceEEEEecc
Q 002412 222 KNAVIFLFNTGEE-EGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 222 ~~~I~Flf~~~EE-~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
+++|.|++..+|| .|..|++.++++++..-+..++|+ |.
T Consensus 164 ~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~~~~i~-e~ 203 (472)
T PRK09133 164 KRDIILALTGDEEGTPMNGVAWLAENHRDLIDAEFALN-EG 203 (472)
T ss_pred CCCEEEEEECccccCccchHHHHHHHHhhccCeEEEEE-CC
Confidence 8999999999999 899999999977653234567787 64
No 10
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.38 E-value=4.9e-12 Score=146.01 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELG------PHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (926)
Q Consensus 85 s~erA~~~L~~L~~ig------pr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~ 158 (926)
+.+++++++.+|.+|+ .|+..|.++.++.+||.++|+++|. +++.+
T Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~------~~~~~---------------------- 58 (414)
T PRK12890 7 NGERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGL------EVRRD---------------------- 58 (414)
T ss_pred CHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCC------EEEEc----------------------
Confidence 5689999999999875 3456788888999999999999983 33331
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCC---
Q 002412 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE--- 235 (926)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~--- 235 (926)
...|++++++|+ ..+.+.|++++|+|+||. .|+.|+++|+|++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 59 --~~~nlia~~~g~---~~~~~~l~~~~H~DtVp~-~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~ 132 (414)
T PRK12890 59 --AAGNLFGRLPGR---DPDLPPLMTGSHLDTVPN-GGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRF 132 (414)
T ss_pred --CCCcEEEEeCCC---CCCCCEEEEeCcccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeccccccc
Confidence 235999999874 234578999999999995 57899999999999999999988878899999999999997
Q ss_pred --CCcchhHHhhc
Q 002412 236 --GLNGAHSFVTQ 246 (926)
Q Consensus 236 --gl~GS~~f~~~ 246 (926)
++.||+.+...
T Consensus 133 ~~~~~G~~~~~~~ 145 (414)
T PRK12890 133 GPSMIGSRALAGT 145 (414)
T ss_pred CCccccHHHHHcc
Confidence 67899888743
No 11
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.36 E-value=7.3e-12 Score=144.75 Aligned_cols=127 Identities=20% Similarity=0.218 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHhcC--C-----CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELG--P-----HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 84 fs~erA~~~L~~L~~ig--p-----r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
++.+|.++++..|.+|| | |+..|.++.++++||.++|++.|. +++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~------~v~~~-------------------- 60 (414)
T PRK12891 7 VDGERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGC------TVRVD-------------------- 60 (414)
T ss_pred cCHHHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCC------EEEEC--------------------
Confidence 46679999999999985 2 566788888999999999999983 34432
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCC
Q 002412 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG 236 (926)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~g 236 (926)
...||+++++|. +...+.|++++|+||||. .|..|+++||+++|++++.|.+.+.+++++|.|+++.+||.+
T Consensus 61 ----~~gNl~a~~~g~---~~~~~~l~~~~H~DtVp~-gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~ 132 (414)
T PRK12891 61 ----AMGNLFARRAGR---DPDAAPVMTGSHADSQPT-GGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGS 132 (414)
T ss_pred ----CCCCEEEEecCC---CCCCCeEEEEecccCCCC-CccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccC
Confidence 235999999875 234578999999999985 477899999999999999999988889999999999999975
Q ss_pred -----CcchhHHh
Q 002412 237 -----LNGAHSFV 244 (926)
Q Consensus 237 -----l~GS~~f~ 244 (926)
+.||+.+.
T Consensus 133 ~f~~~~~Gs~~~~ 145 (414)
T PRK12891 133 RFAPSMVGSGVFF 145 (414)
T ss_pred cCCcccccHHHHh
Confidence 57998775
No 12
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.34 E-value=1.2e-11 Score=142.72 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
.+.+++++++++|+++++ |+..|.++.++.+||.++|+++|. +++++
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~------~~~~~-------------------- 57 (413)
T PRK09290 4 IDAERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGL------TVRVD-------------------- 57 (413)
T ss_pred cCHHHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCC------EEEEc--------------------
Confidence 467999999999999854 556677778999999999999973 33331
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCC-
Q 002412 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE- 235 (926)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~- 235 (926)
+..|++++++|. ..+.+.|++++|+|+||. .|..|++.|+|+|+++++.|.+.+.+++++|+|+++.+||.
T Consensus 58 ----~~~nl~a~~~g~---~~~~~~l~l~gH~DtVp~-~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g 129 (413)
T PRK09290 58 ----AVGNLFGRLEGR---DPDAPAVLTGSHLDTVPN-GGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGS 129 (413)
T ss_pred ----CCCcEEEEecCC---CCCCCEEEEecCccCCCC-CCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccc
Confidence 236999999764 123568999999999985 46789999999999999999988877889999999999998
Q ss_pred ----CCcchhHHhhcC
Q 002412 236 ----GLNGAHSFVTQH 247 (926)
Q Consensus 236 ----gl~GS~~f~~~h 247 (926)
|+.|++.++.++
T Consensus 130 ~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 130 RFGPAMLGSRVFTGAL 145 (413)
T ss_pred cccCccccHHHHHccc
Confidence 578999887554
No 13
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.34 E-value=7.6e-12 Score=150.72 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccc
Q 002412 85 SEFEAIKHVKALTELGP----------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMG 154 (926)
Q Consensus 85 s~erA~~~L~~L~~igp----------r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~ 154 (926)
-.+|.++++..|++|+. |...|++..++++|+.++++++|.+ ++++|
T Consensus 179 ~~~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~-----~v~~D------------------ 235 (591)
T PRK13590 179 LGNDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFD-----EVHID------------------ 235 (591)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCC-----eeeEC------------------
Confidence 46899999999999743 2234888999999999999999830 34443
Q ss_pred ccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcC
Q 002412 155 RTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (926)
Q Consensus 155 ~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE 234 (926)
...||+++++|+ .+..+.|++++|+|||+. .|..|+..||+++||++|.|.+.+.+++++|.|++|.+||
T Consensus 236 ------~~GNl~~~~~g~---~~~~~~v~~gsHlDTV~~-gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EE 305 (591)
T PRK13590 236 ------AVGNVVGRYKGS---TPQAKRLLTGSHYDTVRN-GGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEE 305 (591)
T ss_pred ------CCCCEEEEecCC---CCCCCeEEEecccccCCC-CCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCc
Confidence 458999999986 234578999999999984 6889999999999999999999888889999999999999
Q ss_pred C-----CCcchhHHhh
Q 002412 235 E-----GLNGAHSFVT 245 (926)
Q Consensus 235 ~-----gl~GS~~f~~ 245 (926)
. ++.||+.+..
T Consensus 306 g~rF~~~~~GS~~~~G 321 (591)
T PRK13590 306 GQRYKATFLGSGALIG 321 (591)
T ss_pred cccCCccccchHHHhC
Confidence 7 5999998764
No 14
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.34 E-value=1.2e-11 Score=142.49 Aligned_cols=126 Identities=21% Similarity=0.179 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCC-------CCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002412 88 EAIKHVKALTELGPH-------PVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (926)
Q Consensus 88 rA~~~L~~L~~igpr-------~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~ 160 (926)
|.+++|..+.+++.. ..-|+++.++++||.+++++.|. +++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~~~~~G~------~~~~~------------------------ 51 (401)
T TIGR01879 2 RLWETLMWLGEVGADPAGGMTRLALSPEDREAQDLFKKRMRAAGL------EVRFD------------------------ 51 (401)
T ss_pred hHHHHHHHHhcccCCCCCceEeCCCCHHHHHHHHHHHHHHHHCCC------EEEEe------------------------
Confidence 678889999887543 33477788999999999999983 34432
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCC-----
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE----- 235 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~----- 235 (926)
+..||+++++|. ..+.+.|++++|+||||. .|..|+..|++++|++++.|++.+.+++++|.|+++.+||.
T Consensus 52 ~~~nl~a~~~g~---~~~~~~l~~~~H~DtV~~-gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~ 127 (401)
T TIGR01879 52 EVGNLIGRKEGT---EPPLEVVLSGSHIDTVVN-GGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPY 127 (401)
T ss_pred cCCcEEEEecCC---CCCCCEEEEecccccCCC-CCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCccc
Confidence 236999999875 223578999999999985 47899999999999999999998888999999999999997
Q ss_pred CCcchhHHhhcC
Q 002412 236 GLNGAHSFVTQH 247 (926)
Q Consensus 236 gl~GS~~f~~~h 247 (926)
++.||+.++.+.
T Consensus 128 ~~~Gs~~~~~~~ 139 (401)
T TIGR01879 128 GMWGSRNMVGLA 139 (401)
T ss_pred ccccHHHHhccc
Confidence 789999998544
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.33 E-value=8.6e-12 Score=150.17 Aligned_cols=127 Identities=15% Similarity=0.170 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHhcC-----C-----CCCCCHHHHHHHHHHHHHHHHhccccCCcee-EEEEEEeccCCcccccccccc
Q 002412 85 SEFEAIKHVKALTELG-----P-----HPVGSDALDRALQYVFAAAQKIKETKHWEVD-VEVDFFHAKSGANRLVSGAFM 153 (926)
Q Consensus 85 s~erA~~~L~~L~~ig-----p-----r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~-ve~d~~~~~~g~~~~~gg~~~ 153 (926)
..+|.+++|..|++|| + |...|++..++++|+.+++++.|. + +++|
T Consensus 179 ~~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl------~~v~~D----------------- 235 (591)
T PRK13799 179 IGADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGF------DEVEID----------------- 235 (591)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCC------CeEeEC-----------------
Confidence 6789999999999986 1 455688999999999999999983 3 5554
Q ss_pred cccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCc
Q 002412 154 GRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (926)
Q Consensus 154 ~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~E 233 (926)
...||+++++|+ +++.+.|++++|+|||+ ..|.-|+..||+++||++|.|.+.+.+++++|.++.|.+|
T Consensus 236 -------~~gNv~~~~~g~---~~~~p~v~~gSHlDTV~-~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~E 304 (591)
T PRK13799 236 -------AVGNVVGRYKAA---DDDAKTLITGSHYDTVR-NGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEE 304 (591)
T ss_pred -------CCCCEEEEcCCC---CCCCCeEEEeccccccC-CCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCC
Confidence 458999999886 24568999999999998 5899999999999999999999999999999999999999
Q ss_pred CC-----CCcchhHHhh
Q 002412 234 EE-----GLNGAHSFVT 245 (926)
Q Consensus 234 E~-----gl~GS~~f~~ 245 (926)
|. ++.||+.+..
T Consensus 305 Eg~rF~~~~~GS~~~~G 321 (591)
T PRK13799 305 EGQRFKATFLGSGALIG 321 (591)
T ss_pred CccCCCccccchHHHhC
Confidence 97 8999999974
No 16
>PRK08596 acetylornithine deacetylase; Validated
Probab=99.30 E-value=4.6e-11 Score=138.40 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 87 FEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS-~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
+++.+.|++|.+|. -+.+. .+..++.+||.++|+++|. +++.+ .. +.+..||
T Consensus 13 ~~~~~~l~~Lv~i~-S~s~~~~~e~~~a~~l~~~l~~~G~------~~~~~--~~------------------~~~~~nv 65 (421)
T PRK08596 13 DELLELLKTLVRFE-TPAPPARNTNEAQEFIAEFLRKLGF------SVDKW--DV------------------YPNDPNV 65 (421)
T ss_pred HHHHHHHHHHhcCC-CCCCCchhHHHHHHHHHHHHHHCCC------eEEEE--Ec------------------cCCCceE
Confidence 67889999999872 22222 2345789999999999983 33332 11 0134799
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
+++++|+. ....+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+.+.+++.+
T Consensus 66 ia~~~g~~--~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~ 143 (421)
T PRK08596 66 VGVKKGTE--SDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGD 143 (421)
T ss_pred EEEecCCC--CCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 99998751 112357999999999874 3899999999999999999999887778899
Q ss_pred EEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 225 I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
|.|+|..+||.|..|++.++++.. ....+|+.|..
T Consensus 144 v~~~~~~dEE~g~~G~~~~~~~~~---~~d~~i~~ep~ 178 (421)
T PRK08596 144 LIFQSVIGEEVGEAGTLQCCERGY---DADFAVVVDTS 178 (421)
T ss_pred EEEEEEeccccCCcCHHHHHhcCC---CCCEEEECCCC
Confidence 999999999999999999986543 34677777753
No 17
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.29 E-value=3.6e-11 Score=138.63 Aligned_cols=130 Identities=19% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELGP-------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 84 fs~erA~~~L~~L~~igp-------r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
.+.++++++|++|++|.. |..+|.++.++.+||.++|+++|. +++++
T Consensus 7 ~~~~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~------~~~~~-------------------- 60 (412)
T PRK12893 7 INGERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGL------TVSVD-------------------- 60 (412)
T ss_pred cCHHHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCC------EEEEc--------------------
Confidence 467899999999999762 334466777999999999999983 33331
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCC
Q 002412 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG 236 (926)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~g 236 (926)
+..|++++++|. ..+++.|++++|+|+||. .|..|++.|++++|++++.|.+.+.+++++|.|+|+.+||.|
T Consensus 61 ----~~~n~~a~~~g~---~~~~~~l~l~~H~DtVp~-~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g 132 (412)
T PRK12893 61 ----AIGNLFGRRAGT---DPDAPPVLIGSHLDTQPT-GGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGA 132 (412)
T ss_pred ----CCCcEEEEeCCC---CCCCCEEEEEecccCCCC-CCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEcccccc
Confidence 235999999874 123578999999999984 577899999999999999999887778999999999999985
Q ss_pred -----CcchhHHhhcC
Q 002412 237 -----LNGAHSFVTQH 247 (926)
Q Consensus 237 -----l~GS~~f~~~h 247 (926)
+.|+..+..++
T Consensus 133 ~~~~~~~G~~~~~~~~ 148 (412)
T PRK12893 133 RFAPAMLGSGVFTGAL 148 (412)
T ss_pred ccccccccHHHHhCcC
Confidence 88999887543
No 18
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=99.28 E-value=8.1e-11 Score=135.92 Aligned_cols=145 Identities=20% Similarity=0.283 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGSD-ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~-~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~ 163 (926)
..+++.+.|++|.+| |...+.+ ++.++.+||.++|+++|. +++.+. ... ....
T Consensus 35 ~~~~~~~~l~~lv~i-~S~s~~~~~~~~~~~~l~~~L~~~G~------~v~~~~--~~~-----------------~~~~ 88 (410)
T PRK06133 35 EQPAYLDTLKELVSI-ESGSGDAEGLKQVAALLAERLKALGA------KVERAP--TPP-----------------SAGD 88 (410)
T ss_pred hHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHHHHhCCC------eEEEEc--cCC-----------------CCCC
Confidence 446788899999987 3333332 345899999999999983 333321 100 0236
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC-----------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEE
Q 002412 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (926)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (926)
|++++++|. +.+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+++.+|.
T Consensus 89 ~lia~~~g~-----~~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~ 163 (410)
T PRK06133 89 MVVATFKGT-----GKRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLT 163 (410)
T ss_pred eEEEEECCC-----CCceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence 999999764 2467999999999984 379999999999999999999987767778999
Q ss_pred EEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 227 FLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 227 Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
|+|..+||.|..|++.++++.. .+...++++|..
T Consensus 164 ~~~~~dEE~g~~G~~~~~~~~~--~~~d~~i~~ep~ 197 (410)
T PRK06133 164 VLFNPDEETGSPGSRELIAELA--AQHDVVFSCEPG 197 (410)
T ss_pred EEEECCcccCCccHHHHHHHHh--ccCCEEEEeCCC
Confidence 9999999999899999996643 245677888743
No 19
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.28 E-value=4.5e-11 Score=137.77 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELGP------HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTL 157 (926)
Q Consensus 84 fs~erA~~~L~~L~~igp------r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~ 157 (926)
.+.+|+++.+++|++++. |+..+.++.++++||.++|+++|. +++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~------~~~~~--------------------- 59 (412)
T PRK12892 7 IDGQRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGL------AVRID--------------------- 59 (412)
T ss_pred ccHHHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCC------EEEEc---------------------
Confidence 467899999999999864 244566677999999999999983 33332
Q ss_pred cccccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCC--
Q 002412 158 IYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEE-- 235 (926)
Q Consensus 158 ~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~-- 235 (926)
+..|++++++|+ .+.+.|++++|+||||. .|..|+..|++++|++++.|.+.+.+++++|.|+++.+||.
T Consensus 60 ---~~~nl~a~~~g~----~~~~~l~l~gH~DtVp~-~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~ 131 (412)
T PRK12892 60 ---GIGNVFGRLPGP----GPGPALLVGSHLDSQNL-GGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSR 131 (412)
T ss_pred ---CCCcEEEEecCC----CCCCeEEEEccccCCCC-CCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCccccc
Confidence 235999999875 23378999999999985 46789999999999999999998888899999999999998
Q ss_pred ---CCcchhHHhhcC
Q 002412 236 ---GLNGAHSFVTQH 247 (926)
Q Consensus 236 ---gl~GS~~f~~~h 247 (926)
++.||+.++.++
T Consensus 132 ~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 132 FTPGFLGSRAYAGRL 146 (412)
T ss_pred ccCccccHHHHHcCC
Confidence 578999998543
No 20
>PRK07473 carboxypeptidase; Provisional
Probab=99.27 E-value=9.7e-11 Score=133.86 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELGPHPVGSDAL-DRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (926)
Q Consensus 84 fs~erA~~~L~~L~~igpr~vGS~~~-~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~ 162 (926)
++.+++.+.|++|.+|. -+.+.+++ .++.+|+.++|+++|. +++.. .... + ..
T Consensus 8 ~~~~~~~~~l~~Lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~------~-----------~~ 61 (376)
T PRK07473 8 FDSEAMLAGLRPWVECE-SPTWDAAAVNRMLDLAARDMAIMGA------TIERI--PGRQ------G-----------FG 61 (376)
T ss_pred cCHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHcCC------eEEEe--cCCC------C-----------CC
Confidence 56899999999999973 34444443 4788999999999883 33332 1100 0 12
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEeeecccccC-----------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccE
Q 002412 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (926)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (926)
.|+++++++. ....+.|++++|+|+|+. ++|+.|+++|++++|.+++.|.+.+.+++.+|
T Consensus 62 ~~~~~~~~~~---~~~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v 138 (376)
T PRK07473 62 DCVRARFPHP---RQGEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPI 138 (376)
T ss_pred CeEEEEeCCC---CCCCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCE
Confidence 5899998653 134578999999999952 48999999999999999999988765666789
Q ss_pred EEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCC
Q 002412 226 IFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 263 (926)
Q Consensus 226 ~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (926)
.|+|..+||.|..|++.+++++.. ...++|..|..+
T Consensus 139 ~~~~~~dEE~g~~g~~~~~~~~~~--~~d~~iv~ep~~ 174 (376)
T PRK07473 139 TVLFTPDEEVGTPSTRDLIEAEAA--RNKYVLVPEPGR 174 (376)
T ss_pred EEEEeCCcccCCccHHHHHHHhhc--cCCEEEEeCCCC
Confidence 999999999999999999965432 346778888654
No 21
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.26 E-value=6.8e-11 Score=134.63 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
++++.+.|++|.++ |-+. .++.++++||.++|+++|. +++.+. .. .+..|+
T Consensus 1 ~~~~~~~l~~Lv~i-~s~s--~~e~~~~~~l~~~l~~~G~------~~~~~~--~~------------------~~~~~l 51 (377)
T PRK08588 1 EEEKIQILADIVKI-NSVN--DNEIEVANYLQDLFAKHGI------ESKIVK--VN------------------DGRANL 51 (377)
T ss_pred ChHHHHHHHHHhcC-CCCC--CcHHHHHHHHHHHHHHCCC------ceEEEe--cC------------------CCCceE
Confidence 36788999999986 3233 3445899999999999983 333321 10 034699
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
++++ |. .++.|++.+|+|+||. ++|+.|++.|++++|++++.|.+.+..++.+
T Consensus 52 ~a~~-g~-----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 125 (377)
T PRK08588 52 VAEI-GS-----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGT 125 (377)
T ss_pred EEEe-CC-----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCc
Confidence 9998 42 1268999999999985 3789999999999999999999887778899
Q ss_pred EEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEecc
Q 002412 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 225 I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
|.|+|..+||.|..|++.++++ .+.++...++..|.
T Consensus 126 i~l~~~~dEE~g~~G~~~~~~~-~~~~~~d~~i~~ep 161 (377)
T PRK08588 126 IRLLATAGEEVGELGAKQLTEK-GYADDLDALIIGEP 161 (377)
T ss_pred EEEEEEcccccCchhHHHHHhc-CccCCCCEEEEecC
Confidence 9999999999999999999954 33445556666664
No 22
>PRK07906 hypothetical protein; Provisional
Probab=99.24 E-value=6.1e-11 Score=137.39 Aligned_cols=127 Identities=24% Similarity=0.333 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCCCCC-----CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002412 90 IKHVKALTELGPHPVG-----SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (926)
Q Consensus 90 ~~~L~~L~~igpr~vG-----S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (926)
.+.|++|.+|. .+. .+++.++++||.++++++|. +++.+. .. .+..|
T Consensus 2 ~~ll~~Lv~i~--S~s~~~~~~~~e~~~~~~l~~~l~~~G~------~~~~~~--~~------------------~~~~n 53 (426)
T PRK07906 2 VDLCSELIRID--TTNTGDGTGKGEREAAEYVAEKLAEVGL------EPTYLE--SA------------------PGRAN 53 (426)
T ss_pred hHHHHHHhccc--ccCCCCCCCchHHHHHHHHHHHHHhCCC------CeEEee--cC------------------CCceE
Confidence 46788888873 222 24566899999999999983 333321 10 13479
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
++++++|+ .+..+.|++++|+|+||. ++|+.||++|++++|++++.|++.+..++++
T Consensus 54 v~~~~~g~---~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~ 130 (426)
T PRK07906 54 VVARLPGA---DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRD 130 (426)
T ss_pred EEEEEeCC---CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999775 233468999999999985 3899999999999999999999888788999
Q ss_pred EEEEEeCCcCCC-CcchhHHhhcC
Q 002412 225 VIFLFNTGEEEG-LNGAHSFVTQH 247 (926)
Q Consensus 225 I~Flf~~~EE~g-l~GS~~f~~~h 247 (926)
|.|+|+.+||.| ..|++.+++++
T Consensus 131 i~~~~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 131 LVFAFVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred EEEEEecCcccchhhhHHHHHHHH
Confidence 999999999986 46999988654
No 23
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=99.22 E-value=1.4e-10 Score=132.15 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=105.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002412 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (926)
Q Consensus 91 ~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~ 170 (926)
+.|++|.++..-...+.++.++++||.++|+++|. +++.. ....+ ......|+++.+.
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~------~~~~~--~~~~~--------------~~~~~~~~~~~~~ 59 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGF------STDVI--EITDD--------------RLKVLGKVVVKEP 59 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCC------ceEEE--ecCch--------------hcccccceEEecc
Confidence 46778888622111244566899999999999983 33322 11000 0002246777777
Q ss_pred CCCCCcCCCCEEEEeeecccccCC---------------------CCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEE
Q 002412 171 PKYASEAAENAILVSSHIDTVFAA---------------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (926)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~s---------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (926)
|+ ...+.|++.+|+|+||.. +|+.|+++|+|++|++++.|.+.+.+++++|.|+|
T Consensus 60 g~----~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~ 135 (375)
T TIGR01910 60 GN----GNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQS 135 (375)
T ss_pred CC----CCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEE
Confidence 64 235789999999999863 69999999999999999999987767889999999
Q ss_pred eCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 230 NTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 230 ~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
+.+||.|..|++.++++ ...++...+|..|..
T Consensus 136 ~~~EE~g~~G~~~~~~~-~~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 136 VVDEESGEAGTLYLLQR-GYFKDADGVLIPEPS 167 (375)
T ss_pred EcCcccCchhHHHHHHc-CCCCCCCEEEECCCC
Confidence 99999999999999954 333345677777754
No 24
>PRK07907 hypothetical protein; Provisional
Probab=99.21 E-value=2.3e-10 Score=133.72 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGS----DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS----~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~ 160 (926)
..+++.+.|++|.+|.. ..+. .+..++.+||.++|+++|. . +++.. .. .
T Consensus 16 ~~~~~~~ll~~LV~ipS-~s~~~~~~~~~~~~~~~l~~~l~~~g~---~--~~~~~--~~-------------------~ 68 (449)
T PRK07907 16 LLPRVRADLEELVRIPS-VAADPFRREEVARSAEWVADLLREAGF---D--DVRVV--SA-------------------D 68 (449)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCccchhhHHHHHHHHHHHHHHcCC---c--eEEEE--ec-------------------C
Confidence 35688999999999722 2221 1235799999999999872 0 22221 11 0
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccC
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 219 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~ 219 (926)
+..||+++++|+ ...+.|++++|+|+||. ++|+.|+++|++++|++++.| +.
T Consensus 69 ~~~nl~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~ 141 (449)
T PRK07907 69 GAPAVIGTRPAP----PGAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GG 141 (449)
T ss_pred CCCEEEEEecCC----CCCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---cc
Confidence 347999999764 24578999999999985 379999999999999999999 23
Q ss_pred CCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 220 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 220 ~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
+++++|.|+++++||.|..|++.+++++....+..++|..|..
T Consensus 142 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~~ 184 (449)
T PRK07907 142 DLPVGVTVFVEGEEEMGSPSLERLLAEHPDLLAADVIVIADSG 184 (449)
T ss_pred CCCCcEEEEEEcCcccCCccHHHHHHhchHhhcCCEEEEecCC
Confidence 5678999999999999999999999765433344567766653
No 25
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=99.20 E-value=2.3e-10 Score=131.45 Aligned_cols=148 Identities=18% Similarity=0.241 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002412 82 RGFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (926)
Q Consensus 82 ~~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~ 161 (926)
.++-.+++.+.|++|.+|. -+.+..+..++.+|+.++|+++|. +++. +... ..
T Consensus 4 ~~~~~~~~~~~l~~lv~ip-S~~~~~~~~~~~~~l~~~l~~~G~------~~~~--~~~~------------------~g 56 (400)
T TIGR01880 4 SKWEEDIAVTRFREYLRIN-TVQPNPDYAACVDFLIKQADELGL------ARKT--IEFV------------------PG 56 (400)
T ss_pred cccchHHHHHHHHHHhccC-ccCCCccHHHHHHHHHHHHHhCCC------ceeE--EEec------------------CC
Confidence 3577889999999999982 222333346899999999999983 2221 1110 02
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCC
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHG 220 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~ 220 (926)
..|++++++|+ +...+.|++.+|+|+||. ++|+.|+++|++++|++++.|.+.+.+
T Consensus 57 ~~~l~~~~~g~---~~~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~ 133 (400)
T TIGR01880 57 KPVVVLTWPGS---NPELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFK 133 (400)
T ss_pred ceeEEEEEecC---CCCCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCC
Confidence 46999999774 122478999999999974 379999999999999999999987777
Q ss_pred CCccEEEEEeCCcCCCC-cchhHHhhcCCccCCceEEEEec
Q 002412 221 FKNAVIFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLE 260 (926)
Q Consensus 221 p~~~I~Flf~~~EE~gl-~GS~~f~~~h~~~~~v~a~iNLD 260 (926)
++++|.|+|..+||.|. .|++.++++.. .+.+.+.+.+|
T Consensus 134 ~~~~v~l~~~~dEE~g~~~G~~~~~~~~~-~~~~~~~~~~d 173 (400)
T TIGR01880 134 FKRTIHISFVPDEEIGGHDGMEKFAKTDE-FKALNLGFALD 173 (400)
T ss_pred CCceEEEEEeCCcccCcHhHHHHHHHhhh-ccCCceEEEEc
Confidence 88999999999999875 69999885422 22344555554
No 26
>PRK07338 hypothetical protein; Provisional
Probab=99.20 E-value=2.7e-10 Score=130.91 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002412 86 EFEAIKHVKALTELGPHPVGS-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS-~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (926)
.+++.+.|.+|.++. -..+. ++.+++.+||.++|+++|. +++.. ...... .. ...+....+....|
T Consensus 16 ~~~~~~~l~~lv~i~-S~s~~~~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~~~--~~--~~~~~~~~~~~~~n 82 (402)
T PRK07338 16 QAPMLEQLIAWAAIN-SGSRNLDGLARMAELLADAFAALPG------EIELI--PLPPVE--VI--DADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHhCCC------cEEEe--cCCccc--cc--cccccccccCcCCe
Confidence 567788899999872 22222 2345899999999999984 23321 110000 00 00000001123479
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC-----------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEE
Q 002412 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-----------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIF 227 (926)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-----------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~F 227 (926)
|+++++|. .++.|++++|+|+||. ++|+.|+++|++++|++++.|.+.+..++.+|.|
T Consensus 83 l~a~~~~~-----~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~ 157 (402)
T PRK07338 83 LHVSVRPE-----APRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDV 157 (402)
T ss_pred EEEEECCC-----CCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence 99999653 2245999999999974 3799999999999999999998877667789999
Q ss_pred EEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 228 LFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 228 lf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
+|..+||.|..|++.++.++.. +..+.+.+|..
T Consensus 158 ~~~~dEE~g~~g~~~~~~~~~~--~~~~~i~~ep~ 190 (402)
T PRK07338 158 LINPDEEIGSPASAPLLAELAR--GKHAALTYEPA 190 (402)
T ss_pred EEECCcccCChhhHHHHHHHhc--cCcEEEEecCC
Confidence 9999999999999999866542 34567777753
No 27
>PRK09104 hypothetical protein; Validated
Probab=99.19 E-value=2.6e-10 Score=133.77 Aligned_cols=146 Identities=17% Similarity=0.178 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGSD----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~----~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~ 160 (926)
..+++.+.|++|.+|.. ..+.+ +..++.+||.++|+++|. ++++. .. .
T Consensus 15 ~~~~~~~~L~~lv~i~S-vs~~~~~~~~~~~~~~~l~~~l~~~G~------~v~~~--~~-------------------~ 66 (464)
T PRK09104 15 NLDASLERLFALLRIPS-ISTDPAYAADCRKAADWLVADLASLGF------EASVR--DT-------------------P 66 (464)
T ss_pred hHHHHHHHHHHHhcCCC-CCCCccchHHHHHHHHHHHHHHHHCCC------eEEEE--ec-------------------C
Confidence 46788899999998722 22222 235789999999999983 33321 11 0
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------------CCCCCCchhHHHHHHHHHHHH
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------AEGAGDCSSCVAVMLELARAM 214 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------------spGA~Dd~sgva~~LE~ar~L 214 (926)
+..||++++.|+ ++..+.|++++|+|+||. ++|+.||+.|++++|++++.|
T Consensus 67 ~~~~l~a~~~g~---~~~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 67 GHPMVVAHHEGP---TGDAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CCCEEEEEecCC---CCCCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 236999999864 234678999999999863 368999999999999999999
Q ss_pred HHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEecc
Q 002412 215 SQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 215 ~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
.+.+..++.+|.|+|.++||.|..|.+.++.+.....+..++|+.|.
T Consensus 144 ~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~iv~E~ 190 (464)
T PRK09104 144 KAVTGSLPVRVTILFEGEEESGSPSLVPFLEANAEELKADVALVCDT 190 (464)
T ss_pred HHhcCCCCCcEEEEEECccccCCccHHHHHHhhHHhcCCCEEEEeCC
Confidence 98765677899999999999999999999865432224577888883
No 28
>PRK08201 hypothetical protein; Provisional
Probab=99.17 E-value=4e-10 Score=131.84 Aligned_cols=147 Identities=17% Similarity=0.164 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVG----SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vG----S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~ 160 (926)
..+++.+.|++|.+|.. ..+ ..++.++.+||.++|+++|.+ .++++. . .
T Consensus 12 ~~~~~~~~l~~LV~i~S-vs~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~~--~-------------------~ 64 (456)
T PRK08201 12 RREAHLEELKEFLRIPS-ISALSEHKEDVRKAAEWLAGALEKAGLE-----HVEIME--T-------------------A 64 (456)
T ss_pred HHHHHHHHHHHHhcCCC-CCCCCcchHHHHHHHHHHHHHHHHcCCC-----eEEEEe--c-------------------C
Confidence 34778899999998732 121 123457899999999998831 122221 1 0
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccC
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 219 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~ 219 (926)
+..||++++.|. .+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+.+.
T Consensus 65 ~~~~l~a~~~~~----~~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~ 140 (456)
T PRK08201 65 GHPIVYADWLHA----PGKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEG 140 (456)
T ss_pred CCCEEEEEecCC----CCCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcC
Confidence 236899988653 24578999999999874 38999999999999999999987655
Q ss_pred CCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 220 GFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 220 ~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
.++++|.|++..+||.|..|+..++++++..-+..++|+.|..
T Consensus 141 ~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~~~d~~ii~e~~ 183 (456)
T PRK08201 141 TLPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVVLISDTT 183 (456)
T ss_pred CCCCCEEEEEEcccccCCccHHHHHHhhHHhccCCEEEEeCCC
Confidence 6678999999999999999999998665321123566766643
No 29
>PRK06446 hypothetical protein; Provisional
Probab=99.16 E-value=3.7e-10 Score=131.53 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 87 FEAIKHVKALTELGPHPVGSD-ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~-~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
+++.+.|++|.+|.. +.+.. +..++.+||.++|+++|. +++.+ .. . +..|+
T Consensus 2 ~~~~~~l~eLV~i~S-~s~~~~~~~~~a~~l~~~l~~~G~------~ve~~--~~--------~-----------~~~~l 53 (436)
T PRK06446 2 DEELYTLIEFLKKPS-ISATGEGIEETANYLKDTMEKLGI------KANIE--RT--------K-----------GHPVV 53 (436)
T ss_pred hhHHHHHHHHhCCCC-CCCCcHhHHHHHHHHHHHHHHCCC------eEEEE--ec--------C-----------CCCEE
Confidence 467889999999732 22222 226899999999999883 34332 11 0 24799
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
++++.+ .+.+.|++++|+|+||. ++|+.|+++|++++|.+++.+.+.+ .++.+
T Consensus 54 ia~~~~-----~~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~ 127 (436)
T PRK06446 54 YGEINV-----GAKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVN 127 (436)
T ss_pred EEEecC-----CCCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCC
Confidence 999853 23568999999999874 3899999999999999999887654 56789
Q ss_pred EEEEEeCCcCCCCcchhHHhhcCC
Q 002412 225 VIFLFNTGEEEGLNGAHSFVTQHP 248 (926)
Q Consensus 225 I~Flf~~~EE~gl~GS~~f~~~h~ 248 (926)
|.|+|..+||.|..|++.++++++
T Consensus 128 i~~~~~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 128 VKFLYEGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred EEEEEEcccccCCHhHHHHHHHHH
Confidence 999999999999999999987764
No 30
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=99.16 E-value=3.8e-10 Score=127.49 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002412 85 SEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (926)
.++++.+.|++|.+| |-+ |.++.++.+|+.++|+++|. +++.+ +..|
T Consensus 4 ~~~~~~~~l~~Lv~i-~s~--s~~e~~~~~~l~~~l~~~G~------~~~~~------------------------~~~n 50 (348)
T PRK04443 4 SALEARELLKGLVEI-PSP--SGEEAAAAEFLVEFMESHGR------EAWVD------------------------EAGN 50 (348)
T ss_pred chHHHHHHHHHHHcC-CCC--CCChHHHHHHHHHHHHHcCC------EEEEc------------------------CCCc
Confidence 457899999999997 222 33456899999999999983 33322 2358
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCC
Q 002412 165 IVLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTG 232 (926)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~ 232 (926)
+++++.+ ..+.|++++|+|+||. ++|+.|+++|++++|++++.| + .+++++|.|++..+
T Consensus 51 ~i~~~~~------~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~--~~~~~~i~~~~~~d 121 (348)
T PRK04443 51 ARGPAGD------GPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-E--ALVRARVSFVGAVE 121 (348)
T ss_pred EEEEcCC------CCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-c--ccCCCCEEEEEEcc
Confidence 8998732 2368999999999974 599999999999999999999 3 46788999999999
Q ss_pred cCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 233 EEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 233 EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
||.|..|...++.+. . ...++|+.|..
T Consensus 122 EE~g~~~~~~~l~~~-~--~~d~~iv~Ept 148 (348)
T PRK04443 122 EEAPSSGGARLVADR-E--RPDAVIIGEPS 148 (348)
T ss_pred cccCChhHHHHHHhc-c--CCCEEEEeCCC
Confidence 999888777666443 2 35677777743
No 31
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.16 E-value=3.7e-10 Score=133.00 Aligned_cols=136 Identities=19% Similarity=0.328 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
.+|+++.|++|+++ |++ |.++.++++|+.++++++|. +++.+ +..|+
T Consensus 3 ~~~~~~~l~~l~~i-~s~--s~~e~~~~~~l~~~l~~~G~------~~~~~------------------------~~~n~ 49 (477)
T TIGR01893 3 PSRVFKYFEEISKI-PRP--SKNEKEVSNFIVNWAKKLGL------EVKQD------------------------EVGNV 49 (477)
T ss_pred HHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHHHHHcCC------eEEEe------------------------CCCeE
Confidence 47899999999998 555 45566899999999999983 34433 23699
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccCC------------------------CCCC---CchhHHHHHHHHHHHHHHcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFAA------------------------EGAG---DCSSCVAVMLELARAMSQWA 218 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~s------------------------pGA~---Dd~sgva~~LE~ar~L~~~~ 218 (926)
+++++|+. +.+..+.|++++|+|+||.. +|+. |++.|++++|++++. .
T Consensus 50 ~~~~~~~~-g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~- 124 (477)
T TIGR01893 50 LIRKPATP-GYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---N- 124 (477)
T ss_pred EEEEcCCC-CCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---C-
Confidence 99998742 11345789999999999842 5664 999999999999875 2
Q ss_pred CCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 219 HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 219 ~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
..++++|.++|+.+||.|+.||+.+..+. . .....+|.|..
T Consensus 125 ~~~~~~i~~~~~~dEE~g~~Gs~~l~~~~-~--~~~~~~~~d~~ 165 (477)
T TIGR01893 125 NLKHPPLELLFTVDEETGMDGALGLDENW-L--SGKILINIDSE 165 (477)
T ss_pred CCCCCCEEEEEEeccccCchhhhhcChhh-c--CCcEEEEecCC
Confidence 23566999999999999999999987422 2 33567888754
No 32
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=99.16 E-value=6.6e-10 Score=127.20 Aligned_cols=150 Identities=18% Similarity=0.188 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002412 87 FEAIKHVKALTELGPHPVGS---DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS---~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~ 163 (926)
+++.+.|++|.+|.. ..+. .++.++.+||.++|+++|.+ .++.. ..... ........
T Consensus 5 ~~~~~~l~~lv~i~s-~s~~~~~~~e~~~~~~l~~~l~~~G~~-----~~~~~--~~~~~------------~~~~~~~~ 64 (400)
T PRK13983 5 DEMIELLSELIAIPA-VNPDFGGEGEKEKAEYLESLLKEYGFD-----EVERY--DAPDP------------RVIEGVRP 64 (400)
T ss_pred HHHHHHHHHHhCcCC-CCCCCCCccHHHHHHHHHHHHHHcCCc-----eEEEE--ecCCc------------ccccCCCc
Confidence 578899999998722 1111 23568999999999999831 02221 11000 00000158
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCC
Q 002412 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 222 (926)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~ 222 (926)
|++++++|. .+.+.|++.+|+|+||. ++|+.||+.|++++|++++.|.+.+.+++
T Consensus 65 nl~~~~~g~----~~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~ 140 (400)
T PRK13983 65 NIVAKIPGG----DGKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPK 140 (400)
T ss_pred cEEEEecCC----CCCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCC
Confidence 999999774 23458999999999985 37899999999999999999998777888
Q ss_pred ccEEEEEeCCcCCCCc-chhHHhhcCCc-cCCceEEEEec
Q 002412 223 NAVIFLFNTGEEEGLN-GAHSFVTQHPW-STTIRVAIDLE 260 (926)
Q Consensus 223 ~~I~Flf~~~EE~gl~-GS~~f~~~h~~-~~~v~a~iNLD 260 (926)
++|.|+|..+||.|.. |++.++++++. .....+++..|
T Consensus 141 ~~v~~~~~~dEE~g~~~g~~~~~~~~~~~~~~~d~~i~~~ 180 (400)
T PRK13983 141 YNLGLAFVSDEETGSKYGIQYLLKKHPELFKKDDLILVPD 180 (400)
T ss_pred CcEEEEEEeccccCCcccHHHHHhhcccccCCCCEEEEec
Confidence 9999999999998874 89988866432 22344555444
No 33
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.15 E-value=6.3e-10 Score=128.84 Aligned_cols=152 Identities=17% Similarity=0.123 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhcCCCCCC-C-HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002412 86 EFEAIKHVKALTELGPHPVG-S-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vG-S-~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~ 163 (926)
.+++.+.|++|.++. .+. . .+..++.+||.++|+++|. +++........+ . ..+.+..
T Consensus 13 ~~~~~~~l~~Lv~i~--S~~~~g~~e~~~~~~l~~~l~~~G~------~~~~~~~~~~~~-----------~-~~~~~~~ 72 (427)
T PRK13013 13 RDDLVALTQDLIRIP--TLNPPGRAYREICEFLAARLAPRGF------EVELIRAEGAPG-----------D-SETYPRW 72 (427)
T ss_pred HHHHHHHHHHHhcCC--CcCCCCccHHHHHHHHHHHHHHCCC------ceEEEecCCCCc-----------c-cccCCcc
Confidence 467888899999872 222 1 2335899999999999983 333221000000 0 0112357
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
|++++++|+ .+++.|++.+|+|+||. ++|+.|+++|++++|.+++.|++.+.+++.+
T Consensus 73 nlia~~~g~----~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 148 (427)
T PRK13013 73 NLVARRQGA----RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGS 148 (427)
T ss_pred eEEEEecCC----CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCcc
Confidence 999999774 23578999999999984 3799999999999999999999877777889
Q ss_pred EEEEEeCCcCCCCc-chhHHhhcCCccC--CceEEEEeccC
Q 002412 225 VIFLFNTGEEEGLN-GAHSFVTQHPWST--TIRVAIDLEAM 262 (926)
Q Consensus 225 I~Flf~~~EE~gl~-GS~~f~~~h~~~~--~v~a~iNLD~~ 262 (926)
|.|+|..+||.|.. |.+.++ +....+ ++.++|..|..
T Consensus 149 v~~~~~~dEE~g~~~g~~~l~-~~~~~~~~~~d~~i~~ep~ 188 (427)
T PRK13013 149 IEISGTADEESGGFGGVAYLA-EQGRFSPDRVQHVIIPEPL 188 (427)
T ss_pred EEEEEEeccccCChhHHHHHH-hcCCccccCCCEEEEecCC
Confidence 99999999998766 455554 333222 45666766643
No 34
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=99.14 E-value=6.8e-10 Score=120.96 Aligned_cols=175 Identities=17% Similarity=0.211 Sum_probs=121.6
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCC----
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGL---- 237 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl---- 237 (926)
..|+|+-=. ..++.++++||.|||. -|+.||-.|++...|+++.|...+ ..+-++.+++||.|+
T Consensus 178 ~y~~Ia~~~------~en~vv~i~AH~DHW~--~G~tDN~lg~~~AV~~~~~lr~~~----~~~~lv~FtAEE~g~p~~~ 245 (486)
T COG4882 178 DYNVIAVDG------GENGVVLIGAHLDHWY--TGFTDNILGVAQAVETAGRLRGRG----LAAGLVVFTAEEHGMPGMA 245 (486)
T ss_pred EEEEEEecC------CCCCceEEeechhhhh--hcccchhhhHHHHHHHHHHHhhcC----cceeEEEEeccccCCCCCc
Confidence 356665422 2456899999999997 699999999999999999998754 456778889999876
Q ss_pred -----cchhHHhhcCCccCCceEEEEeccCCCCCCcceeecCCChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChH
Q 002412 238 -----NGAHSFVTQHPWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ 312 (926)
Q Consensus 238 -----~GS~~f~~~h~~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~ 312 (926)
.||+.|.++.+-.+.+.+.+|+|.+|.+... + ..-|.+.+...+..+....+ ++.+ .|-.
T Consensus 246 sfyWa~GSr~~lk~~k~~~~v~~~VN~Dv~g~~~lv-~---~~~P~L~e~~~~~g~~~ves---pe~y--------~Ds~ 310 (486)
T COG4882 246 SFYWAAGSRGLLKESKAAEEVEAYVNFDVAGYRCLV-A---SGAPQLVEHALEAGAVEVES---PEPY--------CDSI 310 (486)
T ss_pred ceeecccchHHHhhcCCchhhhheeccccccccchh-h---hcChHHHHHHHHhCCceecC---CCcc--------cchh
Confidence 4888888887778899999999999875432 1 23467777666542221111 2222 4555
Q ss_pred HHhhcCCCeEEEEEeeC---CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHc-CCCCC
Q 002412 313 VYKEVAGLSGLDFAYTD---KSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAAS-STSLP 370 (926)
Q Consensus 313 ~F~~~~GIPgld~a~~~---~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La~-~~~l~ 370 (926)
.+.. .|||.+.+.... .+..|||+.||+... . ..-+++.+..++++ ..+.|
T Consensus 311 ~y~~-aGiPS~Ti~SL~~~~~~e~yh~p~Dtpa~~-----~-n~~t~~d~a~r~v~~~ie~p 365 (486)
T COG4882 311 MYAW-AGIPSLTIHSLWCPGVQEAYHTPRDTPASW-----D-NAWTAVDAAVRTVTRGIEWP 365 (486)
T ss_pred hhhh-cCCCeeEeeeccCCCccceecCCCCCchhH-----H-HHHHHHHHHHHHHhcCCCCC
Confidence 5665 899999998765 345899999999532 2 22344444555553 34443
No 35
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.14 E-value=8.5e-10 Score=117.92 Aligned_cols=167 Identities=22% Similarity=0.330 Sum_probs=114.6
Q ss_pred CEEEEeeeccccc----CCCCCCCchhHHHHHHHHHHHHHHc---cCCCCccEEEEEeCCcCCCCcchhHHhhcCC---c
Q 002412 180 NAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQW---AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP---W 249 (926)
Q Consensus 180 ~~VLl~AH~DSv~----~spGA~Dd~sgva~~LE~ar~L~~~---~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~---~ 249 (926)
+.|++.|.+||.. .+|||.+..+|++++|++|+.|.+. ....+++|+|+|+.||..|..||+.|+.+.. +
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f 80 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNF 80 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcC
Confidence 5799999999974 3799999999999999999999864 2357899999999999999999999975421 1
Q ss_pred c-----------CCceEEEEeccCCCCCCcceeec--CC--Ch---hHHHHHHHHccCCCC--cchhhhhcccCCCCCCC
Q 002412 250 S-----------TTIRVAIDLEAMGIGGKSGLFQA--GP--HP---WAVENFAAAAKYPSG--QVTAQDLFASGAITSAT 309 (926)
Q Consensus 250 ~-----------~~v~a~iNLD~~G~gG~~~lfq~--g~--~~---~li~~~~~~a~~p~~--~~l~~~~f~~g~ips~T 309 (926)
. ++|..+|.++.+|..+...++.- ++ ++ .+.+.+.+..+.+.. ....+..-...-+|..+
T Consensus 81 ~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~LPPsS 160 (234)
T PF05450_consen 81 PSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIKKASSSNPPLPPSS 160 (234)
T ss_pred cccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhccccccceeccccCCCCCCcch
Confidence 1 58999999999998665334432 22 11 223333332222211 11111111122466656
Q ss_pred ChHHHhhcCCCeEEEEEeeCC---CCCCCCCCCCcCCCCH
Q 002412 310 DFQVYKEVAGLSGLDFAYTDK---SAVYHTKNDKLDLLKP 346 (926)
Q Consensus 310 D~~~F~~~~GIPgld~a~~~~---~~~YHT~~Dt~d~id~ 346 (926)
=++..++..++||+-++-++. ..+||+.+|+.++++.
T Consensus 161 ~~sFLr~~~~i~~vVLtd~~~~f~N~~y~S~~D~~~ni~~ 200 (234)
T PF05450_consen 161 LQSFLRKDPNIPGVVLTDHDSQFTNKYYNSILDDAENINF 200 (234)
T ss_pred HHHHHccCCCCCEEEecCCCcccccCCccCcccChhhhcC
Confidence 455455444899998886554 2479999999998876
No 36
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=99.12 E-value=1.5e-09 Score=120.49 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=109.5
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhc
Q 002412 167 LRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~ 246 (926)
..++|+ +++.|++++|.+|-. -|+||-||++++.+++|.|++. +.+.+..|+|-. +..||-.|+.+
T Consensus 122 ~~ipG~-----s~~EillsthiCHPs---mANdnLSG~~v~~~La~~L~~~--~~rytYRflf~P----eTIGsI~yLsk 187 (386)
T PF09940_consen 122 FVIPGE-----SDEEILLSTHICHPS---MANDNLSGPAVLTFLAKWLKQL--PNRYTYRFLFVP----ETIGSITYLSK 187 (386)
T ss_dssp EEE--S-----SS-EEEEEEE----S----TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE-----TTHHHHHHHHH
T ss_pred EEecCC-----CCCeEEEEEeccCcc---cccccccHHHHHHHHHHHHhcC--CcCceEEEEEcc----ccHHHHHHHHH
Confidence 345774 567899999999964 6999999999999999999975 455999999996 67999999988
Q ss_pred CCc--cCCceEEEEeccCCCCCCcceeecCC-ChhHHHH-HHHHccCCCCcchhhhhcccCCCCCCCChHHHhhcC-CCe
Q 002412 247 HPW--STTIRVAIDLEAMGIGGKSGLFQAGP-HPWAVEN-FAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVA-GLS 321 (926)
Q Consensus 247 h~~--~~~v~a~iNLD~~G~gG~~~lfq~g~-~~~li~~-~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~-GIP 321 (926)
|.. .+++++.++|.++|..|.-. ++.+. +...++. .....++-... ...+ ...|.++|.+.|..-+ ++|
T Consensus 188 n~~~l~~~v~~G~vLtcvGD~~~~s-yk~Sr~g~~~iDr~~~~vl~~~~~~---~~~~--~F~~~GsDERQfcSPG~dLP 261 (386)
T PF09940_consen 188 NLDELKKNVKAGLVLTCVGDDGAYS-YKRSRRGNTLIDRAAAHVLKHSGPN---FKIY--DFLPRGSDERQFCSPGFDLP 261 (386)
T ss_dssp -GGGGGG-EEEEEE--S--SSS-EE-EE--TTSSSHHHHHHHHHHHHSSS----EEEE-----S-SSTHHHHTSTTT---
T ss_pred CHHHHhhheeeeEEEEEecCCCCcc-eecCCCCCcHHHHHHHHHHHhcCCC---ceEe--cccccCCCcceeecCCcCCc
Confidence 864 35599999999999877544 44333 3334432 22221111110 0111 2567899999998621 356
Q ss_pred EEEEEee--CCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002412 322 GLDFAYT--DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (926)
Q Consensus 322 gld~a~~--~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La~~ 366 (926)
...+.-. +..+-|||..|+++.|+++.|+..-+.+..++..|-+.
T Consensus 262 v~~~~Rs~yg~ypEYHTS~Dnl~fi~p~~L~~s~~~~~~~i~~lE~n 308 (386)
T PF09940_consen 262 VGSLMRSKYGEYPEYHTSLDNLDFISPEGLEGSFEVLLEAIEILENN 308 (386)
T ss_dssp EEEEESS-TT--TTTTBTTSSGGG--HHHHHHHHHHHHHHHHHHHH-
T ss_pred eeeeecccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHhcC
Confidence 5554422 23458999999999999999999999999988888764
No 37
>PRK06915 acetylornithine deacetylase; Validated
Probab=99.11 E-value=1.2e-09 Score=126.47 Aligned_cols=156 Identities=22% Similarity=0.209 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
.+++.+.+++|.++ |-+ |.++.++.+||.++|+++|. ++++. ....... .....+......+.+..||
T Consensus 16 ~~~~~~~l~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G~------~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~nl 83 (422)
T PRK06915 16 EEEAVKLLKRLIQE-KSV--SGDESGAQAIVIEKLRELGL------DLDIW--EPSFKKL-KDHPYFVSPRTSFSDSPNI 83 (422)
T ss_pred HHHHHHHHHHHHhC-CCC--CcchHHHHHHHHHHHHhcCC------eeEEe--ecchhhh-hcccccCCcccccCCCceE
Confidence 46788999999986 322 44456889999999999983 23221 1100000 0000000000011245899
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
+++++|. .+.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+.+.+++.+
T Consensus 84 ia~~~g~----~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~ 159 (422)
T PRK06915 84 VATLKGS----GGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGD 159 (422)
T ss_pred EEEEcCC----CCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCc
Confidence 9999874 23478999999999985 3899999999999999999999877778889
Q ss_pred EEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEec
Q 002412 225 VIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 260 (926)
Q Consensus 225 I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD 260 (926)
|.|++..+||.|..|+...+.+ .+ +...++.-|
T Consensus 160 v~~~~~~dEE~g~~G~~~~~~~-~~--~~d~~i~~e 192 (422)
T PRK06915 160 VIFQSVIEEESGGAGTLAAILR-GY--KADGAIIPE 192 (422)
T ss_pred EEEEEecccccCCcchHHHHhc-Cc--CCCEEEECC
Confidence 9999999999988898877643 22 234455444
No 38
>PRK07079 hypothetical protein; Provisional
Probab=99.11 E-value=9.5e-10 Score=129.27 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHH----HHHHhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELGPHPVGSD-ALDRALQYVFA----AAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (926)
Q Consensus 84 fs~erA~~~L~~L~~igpr~vGS~-~~~~a~~yL~~----~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~ 158 (926)
++++++.+.|++|.+|. -..+.+ +...+++|+.+ .|+++|. +++. .....
T Consensus 14 ~~~~~~~~~L~~LV~ip-Svs~~~~~~~~~~~~l~~~~~~~l~~~G~------~~~~--~~~~~---------------- 68 (469)
T PRK07079 14 FDSGAFFADLARRVAYR-TESQNPDRAPALRAYLTDEIAPALAALGF------TCRI--VDNPV---------------- 68 (469)
T ss_pred hccHHHHHHHHHHhccC-CCCCCcccHHHHHHHHHHHHHHHHHHCCC------eEEE--EecCC----------------
Confidence 45568899999999972 222222 23356666654 5666652 3332 11100
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccC----------------------CCCCCCchhHHHHHHHHHHHHHH
Q 002412 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA----------------------AEGAGDCSSCVAVMLELARAMSQ 216 (926)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~----------------------spGA~Dd~sgva~~LE~ar~L~~ 216 (926)
..+..||++++.|. .+.+.|++++|+|+||. ++|+.|+++|++++|++++.|.+
T Consensus 69 ~~~~~~vva~~~~~----~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~ 144 (469)
T PRK07079 69 AGGGPFLIAERIED----DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLA 144 (469)
T ss_pred CCCCCEEEEEeCCC----CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHH
Confidence 01347999998553 34578999999999973 38999999999999999999875
Q ss_pred c-cCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEecc
Q 002412 217 W-AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 217 ~-~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
. +.+++++|.|++..+||.|..|++.++++++...+..++|+.|.
T Consensus 145 ~~~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~d~~iv~e~ 190 (469)
T PRK07079 145 ARGGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREALAADVLIASDG 190 (469)
T ss_pred hcCCCCCCCEEEEEECccccCCccHHHHHHHhHHhcCCCEEEEeCC
Confidence 3 36788899999999999999999999987642222455666553
No 39
>PRK06837 acetylornithine deacetylase; Provisional
Probab=99.11 E-value=1.1e-09 Score=127.10 Aligned_cols=145 Identities=19% Similarity=0.135 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccC-Ccccccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKS-GANRLVSGAFMGRTLIYSDLN 163 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~-g~~~~~gg~~~~~~~~y~~~~ 163 (926)
+.+++.+.|++|.+| +.+ |.++.++++||.++|+++|. +++.. ..+. ......+ .......+.+..
T Consensus 18 ~~~~~~~~l~~li~i--pS~-s~~e~~~~~~l~~~l~~~G~------~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~ 84 (427)
T PRK06837 18 GFDAQVAFTQDLVRF--PST-RGAEAPCQDFLARAFRERGY------EVDRW--SIDPDDLKSHPG--AGPVEIDYSGAP 84 (427)
T ss_pred hhHHHHHHHHHHhcc--CCC-CCcHHHHHHHHHHHHHHCCC------ceEEe--cCCHHHhhhccc--ccccccccCCCc
Confidence 346778889999987 222 34556899999999999984 22221 1100 0000000 000001123568
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCC
Q 002412 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 222 (926)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~ 222 (926)
||+++++|+ .++.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+.+.+++
T Consensus 85 nl~a~~~g~---~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~ 161 (427)
T PRK06837 85 NVVGTYRPA---GKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPA 161 (427)
T ss_pred eEEEEecCC---CCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCC
Confidence 999999874 234578999999999986 25999999999999999999998877788
Q ss_pred ccEEEEEeCCcCCCCcchhHHhh
Q 002412 223 NAVIFLFNTGEEEGLNGAHSFVT 245 (926)
Q Consensus 223 ~~I~Flf~~~EE~gl~GS~~f~~ 245 (926)
++|.|+|+.+||.+..|+...+.
T Consensus 162 ~~i~~~~~~dEE~~g~g~~~~~~ 184 (427)
T PRK06837 162 ARVHFQSVIEEESTGNGALSTLQ 184 (427)
T ss_pred CcEEEEEEeccccCCHhHHHHHh
Confidence 99999999999988778877653
No 40
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.10 E-value=1.1e-09 Score=122.45 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCCEEEEeeeccc
Q 002412 111 RALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDT 190 (926)
Q Consensus 111 ~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DS 190 (926)
..++|+.+..+.++... ..++.. + +..+++.+|.|+ +++.+.||+++|.|+
T Consensus 49 a~~~Fl~~~a~~l~l~~---~~i~~~----------------------p-~~~~~l~T~~GS---~P~L~silL~SH~DV 99 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTV---QKIESE----------------------P-GKYVLLYTWLGS---DPELPSILLNSHTDV 99 (420)
T ss_pred HHHHHHHHHHHhcCCce---eEEEec----------------------C-ceeEEEEEeeCC---CCCccceeeeccccc
Confidence 77999999999987421 111111 1 357899999997 467789999999999
Q ss_pred ccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCC-CcchhHHhhcCC
Q 002412 191 VFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEG-LNGAHSFVTQHP 248 (926)
Q Consensus 191 v~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~g-l~GS~~f~~~h~ 248 (926)
||. ++|+.|+++-++++||++|.|..+|.+|+|+|.+.|..+||.| ..|++.|+. +.
T Consensus 100 VP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~-~~ 178 (420)
T KOG2275|consen 100 VPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAK-TE 178 (420)
T ss_pred cCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhh-hh
Confidence 986 4899999999999999999999999999999999999999975 899999995 33
Q ss_pred ccCCceEEEEeccCC
Q 002412 249 WSTTIRVAIDLEAMG 263 (926)
Q Consensus 249 ~~~~v~a~iNLD~~G 263 (926)
..++....+.+|=-|
T Consensus 179 ~~~~l~~~filDEG~ 193 (420)
T KOG2275|consen 179 EFKKLNLGFILDEGG 193 (420)
T ss_pred hhcccceeEEecCCC
Confidence 334444555555433
No 41
>PRK05469 peptidase T; Provisional
Probab=99.10 E-value=9.1e-10 Score=127.04 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002412 87 FEAIKHVKALTELGPHPVGS--------DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS--------~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~ 158 (926)
+.+.+.|++|.+|..- .+. .+.+++.+||.++|+++|.+ .++++
T Consensus 2 ~~~~~~l~~~~~i~s~-s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~-----~~~~~---------------------- 53 (408)
T PRK05469 2 DKLLERFLRYVKIDTQ-SDENSTTVPSTEGQWDLAKLLVEELKELGLQ-----DVTLD---------------------- 53 (408)
T ss_pred chHHHHHHhhEEeecc-cCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC-----eEEEC----------------------
Confidence 4567889999887321 111 34578999999999999831 12222
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------------------------------
Q 002412 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------------------------- 193 (926)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------------------------------- 193 (926)
...||+++++|+. .++.+.|++.+|+|+||.
T Consensus 54 --~~~~v~~~~~g~~--~~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 129 (408)
T PRK05469 54 --ENGYVMATLPANV--DKDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLI 129 (408)
T ss_pred --CCeEEEEEecCCC--CCCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEE
Confidence 2358999998741 234588999999999964
Q ss_pred -CCCC----CCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHh
Q 002412 194 -AEGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 244 (926)
Q Consensus 194 -spGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~ 244 (926)
++|+ .|+++|+|+||.+++.|.+.+..++.+|+|+|..+||.| .|++.++
T Consensus 130 ~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~~~g~v~~~f~~dEE~g-~Ga~~~~ 184 (408)
T PRK05469 130 TTDGTTLLGADDKAGIAEIMTALEYLIAHPEIKHGDIRVAFTPDEEIG-RGADKFD 184 (408)
T ss_pred EcCCCEeecccchHHHHHHHHHHHHHHhCCCCCCCCEEEEEecccccC-CCHHHhh
Confidence 2365 999999999999999998766567789999999999998 8999886
No 42
>PRK07522 acetylornithine deacetylase; Provisional
Probab=99.09 E-value=1.2e-09 Score=124.69 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002412 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi 166 (926)
..+.+.|++|.+| |.+.+ .++.++.+||.++|+++|. +++.. .... .+..||+
T Consensus 4 ~~~~~~l~~lv~i-~S~s~-~~~~~~~~~l~~~l~~~G~------~~~~~--~~~~-----------------~~~~nv~ 56 (385)
T PRK07522 4 MSSLDILERLVAF-DTVSR-DSNLALIEWVRDYLAAHGV------ESELI--PDPE-----------------GDKANLF 56 (385)
T ss_pred hhHHHHHHHHhCC-CCcCC-CccHHHHHHHHHHHHHcCC------eEEEE--ecCC-----------------CCcccEE
Confidence 4578899999997 33332 2234889999999999983 33321 1100 1347999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEE
Q 002412 167 LRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (926)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (926)
+++.++ ..+.|++.+|+|+||. ++|+.|+++++|++|++++.|.+. +++++|.
T Consensus 57 a~~~~~-----~~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~ 129 (385)
T PRK07522 57 ATIGPA-----DRGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLH 129 (385)
T ss_pred EEeCCC-----CCCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEE
Confidence 998542 2468999999999973 489999999999999999999875 4678999
Q ss_pred EEEeCCcCCCCcchhHHhhcCCc-cCCceEEEEecc
Q 002412 227 FLFNTGEEEGLNGAHSFVTQHPW-STTIRVAIDLEA 261 (926)
Q Consensus 227 Flf~~~EE~gl~GS~~f~~~h~~-~~~v~a~iNLD~ 261 (926)
|+|..+||.|..|++.++++... ..+...+|..|.
T Consensus 130 ~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i~~ep 165 (385)
T PRK07522 130 LAFSYDEEVGCLGVPSMIARLPERGVKPAGCIVGEP 165 (385)
T ss_pred EEEEeccccCCccHHHHHHHhhhcCCCCCEEEEccC
Confidence 99999999988999999865322 122455555554
No 43
>PRK13381 peptidase T; Provisional
Probab=99.09 E-value=1.3e-09 Score=125.59 Aligned_cols=125 Identities=15% Similarity=0.238 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCC-------CCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002412 89 AIKHVKALTELGPHP-------VGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (926)
Q Consensus 89 A~~~L~~L~~igpr~-------vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~ 161 (926)
+.+.+.++.+|.... .++++++++++||.++|+++|.+ .+++| +
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~-----~~~~~------------------------~ 53 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLE-----DIVID------------------------E 53 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCC-----cEEEc------------------------C
Confidence 567788888763211 12345678999999999999841 11111 3
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccCC----------------------------------------------C
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFAA----------------------------------------------E 195 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~s----------------------------------------------p 195 (926)
..||+++++|+. +..+.|++++|+|+||.. +
T Consensus 54 ~~nvi~~~~g~~---~~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr 130 (404)
T PRK13381 54 HAIVTAKLPGNT---PGAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSD 130 (404)
T ss_pred CeEEEEEEecCC---CCCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCC
Confidence 369999998751 223789999999999743 4
Q ss_pred CC----CCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhc
Q 002412 196 GA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 196 GA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~ 246 (926)
|+ .|+++|+|++|.+++.|.+.+ .++.+|.|+|..+||.|..|++.++.+
T Consensus 131 G~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 131 GTSVLGADNKAAIAVVMTLLENLTENE-VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CccccccccHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccccccHHHHHHh
Confidence 67 999999999999999998764 457799999999999999999999744
No 44
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=99.09 E-value=6.6e-10 Score=125.75 Aligned_cols=128 Identities=25% Similarity=0.282 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002412 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (926)
Q Consensus 88 rA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~ 167 (926)
|.++.+++|.+|. .-|.++.++.+||.++|+++|. +++.+. ... .+.+..|+++
T Consensus 1 ~~~~~~~~l~~i~---s~s~~e~~~~~~l~~~l~~~g~------~~~~~~--~~~---------------~~~~~~~~~~ 54 (361)
T TIGR01883 1 RLKKYFLELIQID---SESGKEKAILTYLKKQITKLGI------PVSLDE--VPA---------------EVSNDNNLIA 54 (361)
T ss_pred ChHHHHHHHeecC---CCCCcHHHHHHHHHHHHHHcCC------EEEEec--ccc---------------ccCCCceEEE
Confidence 4678899999872 2234456899999999999983 333221 100 0113579999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccC--------------CCCC----CCchhHHHHHHHHHHHHHHccCCCCccEEEEE
Q 002412 168 RIQPKYASEAAENAILVSSHIDTVFA--------------AEGA----GDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (926)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA----~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (926)
+++|+ .+.+.|++.+|+|+||. ++|+ .|+++|++++|++++.|.+.+ .++++|.|+|
T Consensus 55 ~~~g~----~~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~ 129 (361)
T TIGR01883 55 RLPGT----VKFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIF 129 (361)
T ss_pred EEeCC----CCCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEE
Confidence 99875 23468999999999984 3677 899999999999999998765 5678999999
Q ss_pred eCCcCCCCcchhHHhhc
Q 002412 230 NTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 230 ~~~EE~gl~GS~~f~~~ 246 (926)
+.+||.|..|++.+...
T Consensus 130 ~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 130 TVKEELGLIGMRLFDES 146 (361)
T ss_pred EcccccCchhHhHhChh
Confidence 99999999999988743
No 45
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=99.08 E-value=1.3e-09 Score=123.30 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=98.2
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcC
Q 002412 92 HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 171 (926)
Q Consensus 92 ~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~g 171 (926)
.|++|.+|. -+.+. ++.++++||.++|+++|. +++.+. ...+ .+..||++++.|
T Consensus 2 ~l~~lv~i~-S~s~~-~~~~~~~~l~~~l~~~G~------~~~~~~--~~~~----------------~~~~nl~~~~~~ 55 (364)
T TIGR01892 2 ILTKLVAFD-STSFR-PNVDLIDWAQAYLEALGF------SVEVQP--FPDG----------------AEKSNLVAVIGP 55 (364)
T ss_pred hHHHhhCcC-CcCCc-cHHHHHHHHHHHHHHcCC------eEEEEe--CCCC----------------CccccEEEEecC
Confidence 577888872 22222 335899999999999983 343321 1100 135799999854
Q ss_pred CCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeC
Q 002412 172 KYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNT 231 (926)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~ 231 (926)
+ +.+.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. +.+++|.|+|..
T Consensus 56 ~-----~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~ 128 (364)
T TIGR01892 56 S-----GAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTA 128 (364)
T ss_pred C-----CCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEe
Confidence 3 2457999999999974 389999999999999999999874 357899999999
Q ss_pred CcCCCCcchhHHhhcCCccCCceEEEEecc
Q 002412 232 GEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 232 ~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
+||.|..|++.++++... +...++..|.
T Consensus 129 ~EE~g~~G~~~~~~~~~~--~~d~~i~~ep 156 (364)
T TIGR01892 129 DEEVGCTGAPKMIEAGAG--RPRHAIIGEP 156 (364)
T ss_pred ccccCCcCHHHHHHhcCC--CCCEEEECCC
Confidence 999999999999866542 2234444443
No 46
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.08 E-value=2e-09 Score=126.96 Aligned_cols=138 Identities=19% Similarity=0.277 Sum_probs=105.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccc
Q 002412 84 FSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLN 163 (926)
Q Consensus 84 fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~ 163 (926)
...++.++.+++|++| |++.+ ..+++.+|+.++++++|. +++.| ...
T Consensus 7 ~~~~~~~~~l~~Lv~i-ps~S~--~e~~~~~~l~~~~~~~G~------~~~~d------------------------~~g 53 (485)
T PRK15026 7 LSPQPLWDIFAKICSI-PHPSY--HEEQLAEYIVGWAKEKGF------HVERD------------------------QVG 53 (485)
T ss_pred cCHHHHHHHHHHHhCC-CCCCC--CHHHHHHHHHHHHHhCCC------EEEEE------------------------ecC
Confidence 4578899999999997 56654 445899999999999883 34443 236
Q ss_pred eEEEEEcCCCCCcCCCCEEEEeeecccccC------------------------CCCC---CCchhHHHHHHHHHHHHHH
Q 002412 164 HIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------AEGA---GDCSSCVAVMLELARAMSQ 216 (926)
Q Consensus 164 NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------------------spGA---~Dd~sgva~~LE~ar~L~~ 216 (926)
|+++++++.. +....+.|++.+|+|+|+. ++|+ .|+++|+|++|++++ +
T Consensus 54 nvi~~~~~~~-g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~---~ 129 (485)
T PRK15026 54 NILIRKPATA-GMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA---D 129 (485)
T ss_pred eEEEEEcCCC-CCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH---h
Confidence 8999886531 1134578999999999974 2787 499999999988763 3
Q ss_pred ccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 217 WAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 217 ~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
.+. ++.+|.++|+.+||.|+.||+.+.. . ..+.+++||+|..
T Consensus 130 ~~~-~~~~i~~l~t~dEE~G~~ga~~l~~--~-~~~~~~~i~~e~~ 171 (485)
T PRK15026 130 ENV-VHGPLEVLLTMTEEAGMDGAFGLQS--N-WLQADILINTDSE 171 (485)
T ss_pred CCC-CCCCEEEEEEcccccCcHhHHHhhh--c-cCCcCEEEEeCCC
Confidence 333 3678999999999999999999863 2 2467899999875
No 47
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=99.07 E-value=2e-09 Score=121.39 Aligned_cols=133 Identities=27% Similarity=0.298 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh-ccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKI-KETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~i-g~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (926)
.+++.+.+++|.++ |.+ |.++.++.+||.++|+++ + ++++. ...|
T Consensus 6 ~~~~~~~l~~li~i-ps~--s~~e~~~~~~l~~~l~~~~~------~~~~~-------------------------~~~~ 51 (352)
T PRK13007 6 AADLAELTAALVDI-PSV--SGDEKALADAVEAALRALPH------LEVIR-------------------------HGNS 51 (352)
T ss_pred HHHHHHHHHHHhcC-CCC--CchHHHHHHHHHHHHHhCcC------ceEEe-------------------------cCCe
Confidence 36788999999986 333 334568899999999986 4 12211 1258
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC--------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEe
Q 002412 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFN 230 (926)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~ 230 (926)
+++++.+. ..+.|++.+|+|+||. ++|+.|+++|+|++|.+++.|. +++++|.|+|.
T Consensus 52 ~~~~~~~~-----~~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~ 122 (352)
T PRK13007 52 VVARTDLG-----RPSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFY 122 (352)
T ss_pred EEEEccCC-----CCCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEE
Confidence 99998432 1246999999999985 4899999999999999999993 36789999999
Q ss_pred CCcCCCC--cchhHHhhcCCccCCceEEEEecc
Q 002412 231 TGEEEGL--NGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 231 ~~EE~gl--~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
++||.|. .|+..++.+++...+..++|+.|.
T Consensus 123 ~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep 155 (352)
T PRK13007 123 DCEEVEAEANGLGRLAREHPEWLAGDFAILLEP 155 (352)
T ss_pred ecccccCCcccHHHHHHhcccccCCCEEEEecC
Confidence 9999864 588888866554445678888875
No 48
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.1e-08 Score=114.94 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002412 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi 166 (926)
+...+.|++|+++ +-+.|.++ ++++|+.++|++++. +++.| +..||+
T Consensus 2 ~~~~~~LkeL~~~-~gpsG~E~--eVr~~~~~el~~~~~------ev~~D------------------------~lGnli 48 (355)
T COG1363 2 EELLELLKELLEA-PGPSGYEE--EVRDVLKEELEPLGD------EVEVD------------------------RLGNLI 48 (355)
T ss_pred hHHHHHHHHHHcC-CCCCCcHH--HHHHHHHHHHHHhCC------ceEEc------------------------CCCcEE
Confidence 3567889999985 45566544 589999999999973 34443 568999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccCC----------------------------------------------------
Q 002412 167 LRIQPKYASEAAENAILVSSHIDTVFAA---------------------------------------------------- 194 (926)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~s---------------------------------------------------- 194 (926)
++++|+ ...+.|++.||+|.+..-
T Consensus 49 a~~~g~----~g~~~imi~AHmDEiG~mV~~I~~~G~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~ 124 (355)
T COG1363 49 AKKGGK----NGPPKVMIAAHMDEIGFMVKEIEDDGFLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKE 124 (355)
T ss_pred EEecCC----CCCccEEEEeecceeeeeEEEECCCceEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCc
Confidence 999884 234559999999998530
Q ss_pred ---------------------------------------------------CCCCCchhHHHHHHHHHHHHHHccCCCCc
Q 002412 195 ---------------------------------------------------EGAGDCSSCVAVMLELARAMSQWAHGFKN 223 (926)
Q Consensus 195 ---------------------------------------------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~ 223 (926)
.=|-||..||++|||++|.| + +..++.
T Consensus 125 ~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~ 202 (355)
T COG1363 125 EAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFVVFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPA 202 (355)
T ss_pred cccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEEEEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCc
Confidence 12789999999999999999 4 567899
Q ss_pred cEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCCCCCC--------------cceeec--CC-ChhHHHHHHHH
Q 002412 224 AVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGIGGK--------------SGLFQA--GP-HPWAVENFAAA 286 (926)
Q Consensus 224 ~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~gG~--------------~~lfq~--g~-~~~li~~~~~~ 286 (926)
+++|+|+.-||.|+.||+....+ -+-..+|.+|..+++.. .+.+.. ++ ++.+.+...+.
T Consensus 203 ~vy~v~tvqEEVGlrGA~~~a~~----i~pd~aiavd~~~~~d~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~ 278 (355)
T COG1363 203 DVYFVASVQEEVGLRGAKTSAFR----IKPDIAIAVDVTPAGDTPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLEL 278 (355)
T ss_pred eEEEEEecchhhccchhhccccc----cCCCEEEEEecccccCCCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 99999999999999999987632 23457777777665332 222332 22 56676666554
Q ss_pred ccCCCCcchhhhhcccCCCC-CCCChHHHhhc-CCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHH
Q 002412 287 AKYPSGQVTAQDLFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAA 364 (926)
Q Consensus 287 a~~p~~~~l~~~~f~~g~ip-s~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La 364 (926)
|+. .+.. +|....| .+||-..+... .|+|...+..-- .+-|++. +.++.+.+.++.+.+.+++..+.
T Consensus 279 A~~-~~Ip-----~Q~~v~~~ggTDA~a~~~~g~gvpta~Igip~--ry~Hs~~---e~~~~~D~~~~~~Ll~~~i~~~~ 347 (355)
T COG1363 279 AEK-NNIP-----YQVDVSPGGGTDAGAAHLTGGGVPTALIGIPT--RYIHSPV---EVAHLDDLEATVKLLVAYLESLD 347 (355)
T ss_pred HHH-cCCC-----eEEEecCCCCccHHHHHHcCCCCceEEEeccc--ccccCcc---eeecHHHHHHHHHHHHHHHHhcc
Confidence 421 1111 2222334 58998887653 479988776421 2357654 55667788888888877777765
Q ss_pred c
Q 002412 365 S 365 (926)
Q Consensus 365 ~ 365 (926)
.
T Consensus 348 ~ 348 (355)
T COG1363 348 R 348 (355)
T ss_pred h
Confidence 4
No 49
>PRK07205 hypothetical protein; Provisional
Probab=99.06 E-value=1.5e-09 Score=126.76 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGS--------DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS--------~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
+.+++.+.|++|.+|.. ..+. ++-.++.+|+.++++++|. +++++ .
T Consensus 9 ~~~~~~~~l~~lv~i~S-~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~------~~~~~---~---------------- 62 (444)
T PRK07205 9 VQDACVAAIKTLVSYPS-VLNEGENGTPFGQAIQDVLEATLDLCQGLGF------KTYLD---P---------------- 62 (444)
T ss_pred hHHHHHHHHHHHccccc-ccCCCcCCCCCchhHHHHHHHHHHHHHhCCC------EEEEc---C----------------
Confidence 56788999999998732 1211 1225788999999999873 33332 0
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHH
Q 002412 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMS 215 (926)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~ 215 (926)
...++++++ |. .++.|++++|+|+||. ++|+.|++.|+|++|++++.|.
T Consensus 63 ----~~~~~~~~~-g~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~ 132 (444)
T PRK07205 63 ----KGYYGYAEI-GQ-----GEELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALL 132 (444)
T ss_pred ----CCeEEEEEe-cC-----CCcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHH
Confidence 112556655 32 2467999999999985 3899999999999999999999
Q ss_pred HccCCCCccEEEEEeCCcCCCCcchhHHhhcC
Q 002412 216 QWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQH 247 (926)
Q Consensus 216 ~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h 247 (926)
+.+.+++++|.|+|.++||.|..|++.|+...
T Consensus 133 ~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 133 DAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred HcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 98878889999999999999999999998643
No 50
>PRK06156 hypothetical protein; Provisional
Probab=99.06 E-value=3.5e-09 Score=126.16 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC--------HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGS--------DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS--------~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
..+++.+.|++|.+|. .++. ++.....+||.+++++.|. +++.
T Consensus 44 ~~~~~~~~l~~lv~i~--S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~------~~~~--------------------- 94 (520)
T PRK06156 44 YGAAAIESLRELVAFP--TVRVEGVPQHENPEFIGFKKLLKSLARDFGL------DYRN--------------------- 94 (520)
T ss_pred hHHHHHHHHHHhcCcC--cccCCCCCccCCccHHHHHHHHHHHHHHCCC------eEEe---------------------
Confidence 4567888999999873 2221 1223567999999998873 2211
Q ss_pred ccccccceEE-EEEcCCCCCcCCCCEEEEeeecccccC-------------------------CCCCCCchhHHHHHHHH
Q 002412 157 LIYSDLNHIV-LRIQPKYASEAAENAILVSSHIDTVFA-------------------------AEGAGDCSSCVAVMLEL 210 (926)
Q Consensus 157 ~~y~~~~NVi-~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------------spGA~Dd~sgva~~LE~ 210 (926)
...+|+ ++++|+ ..+.|++.+|+|+||. ++|+.|++.|+++++++
T Consensus 95 ----~~~~v~~~~~~g~-----~~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a 165 (520)
T PRK06156 95 ----VDNRVLEIGLGGS-----GSDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYA 165 (520)
T ss_pred ----cCCeEEEEEecCC-----CCCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHH
Confidence 012444 677653 2468999999999973 37999999999999999
Q ss_pred HHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEecc
Q 002412 211 ARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 211 ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
++.|.+.+.+++++|.|+|+.+||.|..|++.++.++. .....+|+|+
T Consensus 166 ~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~~~~~D~ 213 (520)
T PRK06156 166 MKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYT---PPDYNITLDA 213 (520)
T ss_pred HHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcC---CCCeEEeeCC
Confidence 99998887778889999999999999999999996543 2356677775
No 51
>PRK07318 dipeptidase PepV; Reviewed
Probab=99.05 E-value=1.6e-09 Score=127.20 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC---------CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 86 EFEAIKHVKALTELGPHPVG---------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vG---------S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
.+++.+.|++|.+|..-..+ -+++.++.+|+.++++++|. +++.
T Consensus 13 ~~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~------~~~~--------------------- 65 (466)
T PRK07318 13 KDDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGF------KTKN--------------------- 65 (466)
T ss_pred HHHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCC------EEEE---------------------
Confidence 46778899999987321111 12345899999999999873 2221
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHHc
Q 002412 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (926)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~ 217 (926)
..|+++++... ...+.|++.+|+|+||. ++|+.|+++|+++++.+++.|++.
T Consensus 66 -----~~n~~~~~~~~----~~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~ 136 (466)
T PRK07318 66 -----VDNYAGHIEYG----EGEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKEL 136 (466)
T ss_pred -----ecCccceEEEC----CCCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHc
Confidence 12455555421 13357999999999984 389999999999999999999988
Q ss_pred cCCCCccEEEEEeCCcCCCCcchhHHhhcCC
Q 002412 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (926)
Q Consensus 218 ~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~ 248 (926)
+.+++++|.|+|+.+||.|..|++.++++++
T Consensus 137 g~~~~~~i~l~~~~DEE~g~~G~~~l~~~~~ 167 (466)
T PRK07318 137 GLPLSKKVRFIVGTDEESGWKCMDYYFEHEE 167 (466)
T ss_pred CCCCCccEEEEEEcccccCchhHHHHHHhCC
Confidence 8778889999999999999999999997654
No 52
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=99.05 E-value=2.1e-09 Score=121.23 Aligned_cols=129 Identities=19% Similarity=0.174 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
.+++.+.|++|.+|.. .|.+++++.+||.++|+++|. +++.+ ...|+
T Consensus 9 ~~~~~~~l~~lv~i~s---~s~~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~ 55 (346)
T PRK00466 9 KQKAKELLLDLLSIYT---PSGNETNATKFFEKISNELNL------KLEIL------------------------PDSNS 55 (346)
T ss_pred HHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCC------eEEEe------------------------cCCCc
Confidence 3789999999999832 234456889999999999983 33332 11344
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~E 233 (926)
++ .|. +.|++++|+|+||. ++|+.|+++|+|++|++++.|.+.+ .++.|+|+.+|
T Consensus 56 ~~--~g~-------~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dE 122 (346)
T PRK00466 56 FI--LGE-------GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADE 122 (346)
T ss_pred Ee--cCC-------CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCc
Confidence 42 231 35999999999985 3999999999999999999998754 35899999999
Q ss_pred CCCCcchhHHhhcCCccCCceEEEEeccCC
Q 002412 234 EEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 263 (926)
Q Consensus 234 E~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (926)
|.|..|++.+++++ . +...++..|..+
T Consensus 123 E~g~~G~~~l~~~~-~--~~d~~i~~ep~~ 149 (346)
T PRK00466 123 ESTSIGAKELVSKG-F--NFKHIIVGEPSN 149 (346)
T ss_pred ccCCccHHHHHhcC-C--CCCEEEEcCCCC
Confidence 99989999998654 2 345666666543
No 53
>PRK08652 acetylornithine deacetylase; Provisional
Probab=99.01 E-value=3.4e-09 Score=118.99 Aligned_cols=130 Identities=26% Similarity=0.301 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002412 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi 166 (926)
|++.+.+++|.++ |-+ |.++.++.+||.++|+++|. +++.+. . + +..|++
T Consensus 2 ~~~~~~~~~lv~i-ps~--s~~e~~~~~~l~~~l~~~G~------~v~~~~--~--------~-----------~~~~~~ 51 (347)
T PRK08652 2 ERAKELLKQLVKI-PSP--SGQEDEIALHIMEFLESLGY------DVHIES--D--------G-----------EVINIV 51 (347)
T ss_pred hhHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCC------EEEEEe--c--------C-----------ceeEEE
Confidence 6889999999987 323 33456899999999999983 343321 1 0 235666
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcC
Q 002412 167 LRIQPKYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (926)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE 234 (926)
+ +. ++.|++.+|+|+||. ++|+.|+++|+|+||++++.|.+. .++.+|.|+|..+||
T Consensus 52 ~---~~------~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE 120 (347)
T PRK08652 52 V---NS------KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEE 120 (347)
T ss_pred c---CC------CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcc
Confidence 5 21 357999999999985 489999999999999999999854 346799999999999
Q ss_pred CCCcchhHHhhcCCccCCceEEEEecc
Q 002412 235 EGLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 235 ~gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
.|..|++.++++++ ...+|..|.
T Consensus 121 ~g~~G~~~~~~~~~----~d~~i~~ep 143 (347)
T PRK08652 121 EGGRGSALFAERYR----PKMAIVLEP 143 (347)
T ss_pred cCChhHHHHHHhcC----CCEEEEecC
Confidence 98899999986543 146666664
No 54
>PRK05111 acetylornithine deacetylase; Provisional
Probab=99.00 E-value=5.3e-09 Score=119.36 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002412 87 FEAIKHVKALTELGPHPVGSD-----ALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~-----~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~ 161 (926)
++..+.+++|.++. -..+.+ ++.++.+||.+.|+++|. +++.+. .. + ..+
T Consensus 5 ~~~i~~l~~lv~i~-s~s~~e~~~~~~~~~~~~~l~~~l~~~g~------~~~~~~--~~-------~---------~~~ 59 (383)
T PRK05111 5 PSFIEMYRALIATP-SISATDPALDQSNRAVIDLLAGWFEDLGF------NVEIQP--VP-------G---------TRG 59 (383)
T ss_pred hHHHHHHHHHhCcC-CcCCCCcccccchHHHHHHHHHHHHHCCC------eEEEEe--cC-------C---------CCC
Confidence 47889999999872 222221 235799999999999983 333321 10 0 013
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCC
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGF 221 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p 221 (926)
..|+++++ |. ..+.|++.+|+|+||. ++|+.|++++++++|++++.|.+. .+
T Consensus 60 ~~nvia~~-g~-----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~ 131 (383)
T PRK05111 60 KFNLLASL-GS-----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KL 131 (383)
T ss_pred CceEEEEe-CC-----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CC
Confidence 46999998 43 1236999999999973 489999999999999999999864 35
Q ss_pred CccEEEEEeCCcCCCCcchhHHhhcC
Q 002412 222 KNAVIFLFNTGEEEGLNGAHSFVTQH 247 (926)
Q Consensus 222 ~~~I~Flf~~~EE~gl~GS~~f~~~h 247 (926)
+++|+|+|..+||.|..|++.++++.
T Consensus 132 ~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 132 KKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred CCCeEEEEEeccccCcccHHHHHhcC
Confidence 68899999999999989999999654
No 55
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.00 E-value=2.1e-09 Score=109.65 Aligned_cols=165 Identities=26% Similarity=0.308 Sum_probs=113.9
Q ss_pred EEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCc-chhH
Q 002412 183 LVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN-GAHS 242 (926)
Q Consensus 183 Ll~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~-GS~~ 242 (926)
|+.+|+|+||. ++|+.|++.|+++++.+++.|++.+.+++++|+|+|+.+||.|.. |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999992 589999999999999999999988888999999999999999988 9999
Q ss_pred HhhcC-CccCCceEEEEeccCCCCCCcceeecCCChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChHHHhh--cCC
Q 002412 243 FVTQH-PWSTTIRVAIDLEAMGIGGKSGLFQAGPHPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKE--VAG 319 (926)
Q Consensus 243 f~~~h-~~~~~v~a~iNLD~~G~gG~~~lfq~g~~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~--~~G 319 (926)
++++. ....+....+..|..+.+.-. ...++.+++...++.+...+.. .....++..||...+.+ ..+
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~tD~~~~~~~~~~~ 151 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPTGKGGVG----SDNDPPLVQALQAAAQEVGGEP-----PEPVASGGGTDAGFLAEVKGLG 151 (189)
T ss_dssp HHHHCEEEEEEESEEEECECETTSEEE----HCTCHHHHHHHHHHHHHTTSSE-----EEEEEESSSSTHHHHHCHHHTT
T ss_pred hhhhccccccccccccccccccccccc----ccccHHHHHHHHHHHHHHhhcc-----ccccceeccccchhhhhhhccc
Confidence 99663 112335666666654433210 2235656666665543333211 11113567899999995 368
Q ss_pred CeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 002412 320 LSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 361 (926)
Q Consensus 320 IPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~ 361 (926)
+|.+.+.... ...|++... ++.+.+....+.+..+++
T Consensus 152 ~~~i~~G~~~--~~~H~~~E~---i~~~~l~~~~~~~~~~l~ 188 (189)
T PF01546_consen 152 IPAIGFGPGG--SNAHTPDEY---IDIEDLVKGAKIYAALLE 188 (189)
T ss_dssp EEEEEEESCE--ESTTSTT-E---EEHHHHHHHHHHHHHHHH
T ss_pred cceeeeCCCC--CCCCCCCcE---ecHHHHHHHHHHHHHHHh
Confidence 8887665433 578887654 456777777766666553
No 56
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.00 E-value=4.3e-09 Score=121.68 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCCCCC--------CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccc
Q 002412 87 FEAIKHVKALTELGPHPVG--------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLI 158 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vG--------S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~ 158 (926)
+|+.+.+-++++|.. +.+ +...++.++||.++|+++|.+ ++++|.
T Consensus 3 ~~~~~~f~~~~~i~s-~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~-----~v~~d~--------------------- 55 (410)
T TIGR01882 3 EELLPRFLTYVKVNT-RSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQ-----DAHYDE--------------------- 55 (410)
T ss_pred hHHHHHHHhhEEEec-ccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCc-----eEEEcC---------------------
Confidence 678888888888742 222 234457999999999999941 254440
Q ss_pred ccccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------------------------------
Q 002412 159 YSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------------------------------- 193 (926)
Q Consensus 159 y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------------------------------- 193 (926)
+..||+++++|.. ....+.|++.||+|||+.
T Consensus 56 --~~gnv~~~~~~~~--~~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 131 (410)
T TIGR01882 56 --KNGYVIATIPSNT--DKDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLI 131 (410)
T ss_pred --CceEEEEEecCCC--CCCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEE
Confidence 3589999998752 112388999999999973
Q ss_pred -C-----CCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhh
Q 002412 194 -A-----EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVT 245 (926)
Q Consensus 194 -s-----pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~ 245 (926)
+ -| .||++|+|+||++++.|.+.+..++.+|.|+|+.+||.| .|++.+..
T Consensus 132 ~~~g~~l~G-~D~KgglAa~l~A~~~L~e~~~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 132 TTDGTTLLG-ADDKAGIAEIMTAADYLINHPEIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred EcCCCEeec-ccCHHHHHHHHHHHHHHHhCCCCCCCCEEEEEECcccCC-cCcchhhh
Confidence 1 23 799999999999999998753345778999999999988 59988763
No 57
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.99 E-value=4.3e-09 Score=119.67 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002412 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (926)
Q Consensus 88 rA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~ 167 (926)
++.+.+++|.++ +.-|..+.++.+||.+.|+++|. +++.. .. .+..|+++
T Consensus 3 ~~~~~l~~Lv~i---ps~s~~e~~~~~~l~~~l~~~G~------~~~~~--~~-------------------~~~~n~~~ 52 (375)
T PRK13009 3 DVLELAQDLIRR---PSVTPDDAGCQDLLAERLEALGF------TCERM--DF-------------------GDVKNLWA 52 (375)
T ss_pred hHHHHHHHHhCC---CCCCCchhhHHHHHHHHHHHcCC------eEEEe--cc-------------------CCCcEEEE
Confidence 467788889885 23344556889999999999873 33221 11 13479999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEE
Q 002412 168 RIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVI 226 (926)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~ 226 (926)
++ |. +.+.|++.+|+|+||. ++|+.|+++|++++|++++.+.+.+.+++++|+
T Consensus 53 ~~-g~-----~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~ 126 (375)
T PRK13009 53 RR-GT-----EGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIA 126 (375)
T ss_pred Ee-cC-----CCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 87 42 3568999999999985 269999999999999999999887777889999
Q ss_pred EEEeCCcCCC-CcchhHHhhcCCc-cCCceEEEEec
Q 002412 227 FLFNTGEEEG-LNGAHSFVTQHPW-STTIRVAIDLE 260 (926)
Q Consensus 227 Flf~~~EE~g-l~GS~~f~~~h~~-~~~v~a~iNLD 260 (926)
|++..+||.+ ..|++.+++.... .....+++..|
T Consensus 127 ~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 162 (375)
T PRK13009 127 FLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVGE 162 (375)
T ss_pred EEEEeecccccccCHHHHHHHHHHcCcCCCEEEEcC
Confidence 9999999974 4699988743211 12345555555
No 58
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=98.97 E-value=3.4e-08 Score=111.60 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=89.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCCC--------CC
Q 002412 195 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI--------GG 266 (926)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~--------gG 266 (926)
++ .||++||+++++++|.|.+.+.+++.+|+|+|+..||.| .|+.. ....++..+|.+|.... .|
T Consensus 180 r~-~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~gaa~-----~i~pd~a~~i~vd~~~~~p~~~~lg~G 252 (343)
T TIGR03106 180 RH-LDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SGASH-----ALPPDVAELVSVDNGTVAPGQNSSEHG 252 (343)
T ss_pred Ee-cccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-ccchh-----cccHhhhccEEEEecccCCCCCcCCCC
Confidence 54 999999999999999999876678899999999999999 56321 11223333466663321 23
Q ss_pred Ccceee-cC-C-ChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCCCCCCcC
Q 002412 267 KSGLFQ-AG-P-HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKNDKLD 342 (926)
Q Consensus 267 ~~~lfq-~g-~-~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~Dt~d 342 (926)
+.+... .+ + ++.+.+...+.|+. .+...-.+++.. .+||-..+... .|+|...++.- -.+-|| .+
T Consensus 253 p~i~~~d~~~~~~~~l~~~l~~~A~~-~~Ip~Q~~~~~~----~gtDa~~~~~~~~Gi~t~~i~iP--~Ry~Hs----~e 321 (343)
T TIGR03106 253 VTIAMADSSGPFDYHLTRKLIRLCQD-HGIPHRRDVFRY----YRSDAASAVEAGHDIRTALVTFG--LDASHG----YE 321 (343)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHH-cCCCcEEEecCC----CCChHHHHHHcCCCCCEEEeecc--ccchhh----hh
Confidence 333122 12 2 56777666554421 111111123221 36776665442 68998877632 123477 66
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 002412 343 LLKPGSLQHLGENMLAFL 360 (926)
Q Consensus 343 ~id~~slq~~g~~~l~lv 360 (926)
.++.+.++++.+.+.+++
T Consensus 322 ~~~~~D~~~~~~Ll~~~~ 339 (343)
T TIGR03106 322 RTHIDALEALANLLVAYA 339 (343)
T ss_pred hccHHHHHHHHHHHHHHh
Confidence 777887877777665554
No 59
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.96 E-value=9.1e-09 Score=117.86 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCC-C-HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVG-S-DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDL 162 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vG-S-~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~ 162 (926)
..+++.+.|++|.+|. .+. + .++.++.+||.++|+++|. +++++. ...+. . ... ....
T Consensus 4 ~~~~~~~~l~~lv~i~--S~s~~~~~~~~~a~~l~~~l~~~G~------~~~~~~--~~~~~----~----~~~--~~~~ 63 (394)
T PRK08651 4 MMFDIVEFLKDLIKIP--TVNPPGENYEEIAEFLRDTLEELGF------STEIIE--VPNEY----V----KKH--DGPR 63 (394)
T ss_pred hHHHHHHHHHHHhcCC--ccCCCCcCHHHHHHHHHHHHHHcCC------eEEEEe--cCccc----c----ccc--cCCc
Confidence 4578899999999983 222 2 3345799999999999983 333321 11100 0 000 0124
Q ss_pred ceEEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCCC
Q 002412 163 NHIVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFK 222 (926)
Q Consensus 163 ~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~ 222 (926)
.|++++. +. .++.|++.+|+|+||. ++|+.|++.|++++|++++.+.+.+ +
T Consensus 64 ~~~~~~~-~~-----~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~ 134 (394)
T PRK08651 64 PNLIARR-GS-----GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---D 134 (394)
T ss_pred ceEEEEe-CC-----CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---C
Confidence 6888865 32 2378999999999975 2788999999999999999998754 7
Q ss_pred ccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCC
Q 002412 223 NAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMG 263 (926)
Q Consensus 223 ~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G 263 (926)
++|.|+|..+||.|..|++.++++... +...++..|..|
T Consensus 135 ~~v~~~~~~~EE~g~~G~~~~~~~~~~--~~d~~i~~~~~~ 173 (394)
T PRK08651 135 GNIELAIVPDEETGGTGTGYLVEEGKV--TPDYVIVGEPSG 173 (394)
T ss_pred CCEEEEEecCccccchhHHHHHhccCC--CCCEEEEecCCC
Confidence 899999999999988999999965532 245566666544
No 60
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=98.96 E-value=6.1e-09 Score=122.48 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC-----------CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccc
Q 002412 86 EFEAIKHVKALTELGPHPVG-----------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMG 154 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vG-----------S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~ 154 (926)
.+++.+.|++|.+|. .+. ..+..++.+|+.+.++++|. +++..
T Consensus 12 ~~~~~~~l~~lv~ip--S~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~------~~~~~------------------ 65 (466)
T TIGR01886 12 KDALLEDLEELLRID--SSEDLENATEEYPFGPGPVDALTKFLSFAERDGF------TTKNF------------------ 65 (466)
T ss_pred HHHHHHHHHHHhCCC--CcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCC------eEEEe------------------
Confidence 356788899998873 221 13445789999999999983 23211
Q ss_pred ccccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHH
Q 002412 155 RTLIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMS 215 (926)
Q Consensus 155 ~~~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~ 215 (926)
.|+++++.+. .+++.|++.+|+|+||. ++|+.||+.|++++|.+++.|+
T Consensus 66 --------~~~~~~~~~~----~~~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~ 133 (466)
T TIGR01886 66 --------DNYAGHVEYG----AGDERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILK 133 (466)
T ss_pred --------cCCceeEEec----CCCCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHH
Confidence 1222222221 23568999999999975 4999999999999999999999
Q ss_pred HccCCCCccEEEEEeCCcCCCCcchhHHhhcCC
Q 002412 216 QWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHP 248 (926)
Q Consensus 216 ~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~ 248 (926)
+.+.+++++|+|++..+||.|..|++.+++++.
T Consensus 134 ~~~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 134 ELGLPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred HhCCCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 888888999999999999999999999997654
No 61
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=98.96 E-value=8.3e-09 Score=118.99 Aligned_cols=145 Identities=20% Similarity=0.217 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002412 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi 166 (926)
+++.+.|++|.++.. +...+..++++|+.++|++++. .++.+.... . .+..|++
T Consensus 13 ~~~~~~l~~lv~~~s--~s~~~~~~~~~~l~~~l~~~g~------~~~~~~~~~----------------~--~~~~n~~ 66 (409)
T COG0624 13 DDILELLKELVRIPS--VSAGEEAEAAELLAEWLEELGF------EVEEDEVGP----------------G--PGRPNLV 66 (409)
T ss_pred HHHHHHHHHHhcCCC--CCcccchHHHHHHHHHHHHcCC------ceEEeecCC----------------C--CCceEEE
Confidence 455678888888622 2235667999999999999883 333332110 0 0346999
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccE
Q 002412 167 LRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (926)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (926)
+++.+. ..++.|++++|+|+||. ++|+.|++.++++++.+++.+.+.+..++.+|
T Consensus 67 ~~~~~~----~~~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v 142 (409)
T COG0624 67 ARLGGG----DGGPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDV 142 (409)
T ss_pred EEecCC----CCCCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEE
Confidence 999875 23389999999999986 38999999999999999999999777888999
Q ss_pred EEEEeCCcCCCCcchhHHhhcCCc--cCCceEEEEecc
Q 002412 226 IFLFNTGEEEGLNGAHSFVTQHPW--STTIRVAIDLEA 261 (926)
Q Consensus 226 ~Flf~~~EE~gl~GS~~f~~~h~~--~~~v~a~iNLD~ 261 (926)
.+++.++||.|..|+..++.++.. ..+..+.|..|.
T Consensus 143 ~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 143 RLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred EEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 999999999999999999866542 345677777776
No 62
>PRK08554 peptidase; Reviewed
Probab=98.95 E-value=8.5e-09 Score=120.32 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002412 88 EAIKHVKALTELGPHPVG---SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (926)
Q Consensus 88 rA~~~L~~L~~igpr~vG---S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (926)
++.+.|++|.+|.....+ ..+..++.+|+.+.++++|. +++. +.. .+..|
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~------~~~~--~~~-------------------~~~~~ 54 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGI------ESEL--IEK-------------------DGYYA 54 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCC------eEEE--Eec-------------------CCceE
Confidence 467788999887321111 12245899999999999883 2322 111 02368
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC--------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 165 IVLRIQPKYASEAAENAILVSSHIDTVFA--------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~--------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
+++++ |. .++.|++.+|+|+||. ++|+.|+++|++++|.+++.|.+. .++++
T Consensus 55 l~~~~-~~-----~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~ 126 (438)
T PRK08554 55 VYGEI-GE-----GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGK 126 (438)
T ss_pred EEEEe-CC-----CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCC
Confidence 88886 32 2357999999999975 399999999999999999999864 36788
Q ss_pred EEEEEeCCcCCCCcchhHHhhcCC-ccCCceEEEEeccCC
Q 002412 225 VIFLFNTGEEEGLNGAHSFVTQHP-WSTTIRVAIDLEAMG 263 (926)
Q Consensus 225 I~Flf~~~EE~gl~GS~~f~~~h~-~~~~v~a~iNLD~~G 263 (926)
|.|+|+.+||.|..++..+++... ......++|+.|..+
T Consensus 127 i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~~iv~Ept~ 166 (438)
T PRK08554 127 VIFAFTGDEEIGGAMAMHIAEKLREEGKLPKYMINADGIG 166 (438)
T ss_pred EEEEEEcccccCccccHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 999999999998877776664332 224568899999754
No 63
>PRK13004 peptidase; Reviewed
Probab=98.94 E-value=1.2e-08 Score=117.32 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
.+++.+.+++|.++ |-+ |.++.++.+||.++|+++|.+ ..+++ ...|+
T Consensus 14 ~~~~~~~l~~lv~i-ps~--s~~e~~~a~~l~~~l~~~G~~-----~~~~~------------------------~~~n~ 61 (399)
T PRK13004 14 KADMTRFLRDLIRI-PSE--SGDEKRVVKRIKEEMEKVGFD-----KVEID------------------------PMGNV 61 (399)
T ss_pred HHHHHHHHHHHhcC-CCC--CCchHHHHHHHHHHHHHcCCc-----EEEEc------------------------CCCeE
Confidence 46788999999986 222 334567899999999999831 11111 22589
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
++++.|. .+.|++.+|+|+||. ++|+.||++|++++|.+++.|.+.+..++.+
T Consensus 62 ~a~~~~~------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~ 135 (399)
T PRK13004 62 LGYIGHG------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYT 135 (399)
T ss_pred EEEECCC------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCe
Confidence 9988542 267999999999985 2689999999999999999999887778899
Q ss_pred EEEEEeCCcCC-CCcchhHHhhcCCccCCceEEEEecc
Q 002412 225 VIFLFNTGEEE-GLNGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 225 I~Flf~~~EE~-gl~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
|.|+|..+||. +..|++.++++... +...++..|.
T Consensus 136 i~~~~~~~EE~~~g~~~~~~~~~~~~--~~d~~i~~e~ 171 (399)
T PRK13004 136 LYVTGTVQEEDCDGLCWRYIIEEDKI--KPDFVVITEP 171 (399)
T ss_pred EEEEEEcccccCcchhHHHHHHhcCC--CCCEEEEccC
Confidence 99999999995 45677777754221 2344455443
No 64
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=98.91 E-value=1.1e-08 Score=115.06 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=94.3
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcC
Q 002412 92 HVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQP 171 (926)
Q Consensus 92 ~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~g 171 (926)
.|++|.++ |-+.| .++++.+||.++|+++|. +++.+ ...|+++.. +
T Consensus 2 ~l~~lv~i-~s~s~--~e~~~~~~l~~~l~~~g~------~~~~~------------------------~~~~~~~~~-~ 47 (336)
T TIGR01902 2 LLKDLLEI-YSPSG--KEANAAKFLEEISKDLGL------KLIID------------------------DAGNFILGK-G 47 (336)
T ss_pred hHHHHhcC-CCCCc--chHHHHHHHHHHHHHcCC------EEEEC------------------------CCCcEEEEe-C
Confidence 46788886 33333 346899999999999983 23211 224777764 2
Q ss_pred CCCCcCCCCEEEEeeecccccC------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcc
Q 002412 172 KYASEAAENAILVSSHIDTVFA------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNG 239 (926)
Q Consensus 172 ~~~~~~~~~~VLl~AH~DSv~~------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~G 239 (926)
. +.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+. ..+|+|++..+||.|..|
T Consensus 48 ~-----~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G 118 (336)
T TIGR01902 48 D-----GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKG 118 (336)
T ss_pred C-----CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCcc
Confidence 2 3478999999999973 489999999999999999999764 358999999999999999
Q ss_pred hhHHhhcCCccCCceEEEEeccCC
Q 002412 240 AHSFVTQHPWSTTIRVAIDLEAMG 263 (926)
Q Consensus 240 S~~f~~~h~~~~~v~a~iNLD~~G 263 (926)
++.+++++. . .++|..|..+
T Consensus 119 ~~~~~~~~~--~--~~~ii~ept~ 138 (336)
T TIGR01902 119 AREVIDKNY--P--FYVIVGEPSG 138 (336)
T ss_pred HHHHHhhcC--C--CEEEEecCCC
Confidence 999996643 1 2667777654
No 65
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=98.89 E-value=1.6e-08 Score=114.88 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002412 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (926)
Q Consensus 91 ~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~ 170 (926)
+.|++|.++ +.-|.++.++++||.++|+++|. +++.. .. + +..|++++.
T Consensus 3 ~~l~~lv~i---ps~s~~e~~~~~~i~~~l~~~G~------~~~~~--~~--------~-----------~~~~~~~~~- 51 (370)
T TIGR01246 3 ELAKELISR---PSVTPNDAGCQDIIAERLEKLGF------EIEWM--HF--------G-----------DTKNLWATR- 51 (370)
T ss_pred HHHHHHhcC---CCCCcchHHHHHHHHHHHHHCCC------EEEEE--ec--------C-----------CCceEEEEe-
Confidence 567888886 23344556899999999999983 33322 11 0 236899975
Q ss_pred CCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEE
Q 002412 171 PKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLF 229 (926)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf 229 (926)
|. ..+.|++.+|+|+||. ++|+.|++.|+++++++++.+.+.+.+++++|+|+|
T Consensus 52 g~-----~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~ 126 (370)
T TIGR01246 52 GT-----GEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLI 126 (370)
T ss_pred cC-----CCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 32 3468999999999975 278999999999999999999887767788999999
Q ss_pred eCCcCCCC-cchhHHhhcCCc-cCCceEEEEec
Q 002412 230 NTGEEEGL-NGAHSFVTQHPW-STTIRVAIDLE 260 (926)
Q Consensus 230 ~~~EE~gl-~GS~~f~~~h~~-~~~v~a~iNLD 260 (926)
..+||.+. .|++.+++.... ......++..|
T Consensus 127 ~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~e 159 (370)
T TIGR01246 127 TSDEEGTAIDGTKKVVETLMARDELIDYCIVGE 159 (370)
T ss_pred EeccccCCCcCHHHHHHHHHhcCCCCCEEEEcC
Confidence 99999864 699988743211 11345555545
No 66
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=98.88 E-value=1.9e-08 Score=114.92 Aligned_cols=134 Identities=24% Similarity=0.221 Sum_probs=96.4
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCC
Q 002412 93 VKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPK 172 (926)
Q Consensus 93 L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~g~ 172 (926)
|++|.+| |-+ |.++.++.+||.++|++++.. .++++. ...||++++.+.
T Consensus 2 l~~Lv~i-pS~--s~~e~~~~~~i~~~l~~~g~~-----~~~~~~-----------------------~~~nvva~~~~~ 50 (373)
T TIGR01900 2 LQQIMDI-FSP--SDHEGPIADEIEAALNNLELE-----GLEVFR-----------------------FGDNVLARTDFG 50 (373)
T ss_pred hHHHhCC-CCC--CchHHHHHHHHHHHHhhcccc-----CceEEE-----------------------ECCEEEEecCCC
Confidence 5778876 222 334457899999999987621 122221 013999987432
Q ss_pred CCCcCCCCEEEEeeecccccC-------------------------------CCCCCCchhHHHHHHHHHHHHHH--ccC
Q 002412 173 YASEAAENAILVSSHIDTVFA-------------------------------AEGAGDCSSCVAVMLELARAMSQ--WAH 219 (926)
Q Consensus 173 ~~~~~~~~~VLl~AH~DSv~~-------------------------------spGA~Dd~sgva~~LE~ar~L~~--~~~ 219 (926)
+.+.|++++|+|+||. ++|+.|+++|+|++|++++.|.+ .+.
T Consensus 51 -----~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~ 125 (373)
T TIGR01900 51 -----KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPET 125 (373)
T ss_pred -----CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhcccc
Confidence 2467999999999952 37999999999999999999954 344
Q ss_pred CCCccEEEEEeCCcCCCC--cchhHHhhcCCccCCceEEEEeccC
Q 002412 220 GFKNAVIFLFNTGEEEGL--NGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 220 ~p~~~I~Flf~~~EE~gl--~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
.++.+|.|+|..+||.|. .|++.++++++...+..++|..|..
T Consensus 126 ~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~~d~~iv~Ept 170 (373)
T TIGR01900 126 ELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLAADFAIIGEPT 170 (373)
T ss_pred CCCCCEEEEEEecccccCCCCCHHHHHHhCcccccCCEEEEECCC
Confidence 678899999999999853 6999998765432345677777643
No 67
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=98.85 E-value=8.1e-08 Score=107.04 Aligned_cols=197 Identities=18% Similarity=0.205 Sum_probs=132.9
Q ss_pred ccceEEEEEc-CCC--CCcCCCCEEEEeeecccccC----CCCCCCchhHHHHHHHHHHHHHHc----cCCCCccEEEEE
Q 002412 161 DLNHIVLRIQ-PKY--ASEAAENAILVSSHIDTVFA----AEGAGDCSSCVAVMLELARAMSQW----AHGFKNAVIFLF 229 (926)
Q Consensus 161 ~~~NVi~~i~-g~~--~~~~~~~~VLl~AH~DSv~~----spGA~Dd~sgva~~LE~ar~L~~~----~~~p~~~I~Flf 229 (926)
...||.+++. |-. ..++..+.|++.||||+... ++||+-||+|++++||++|.+++. ....++++.|+.
T Consensus 192 ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~l 271 (555)
T KOG2526|consen 192 KILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFIL 271 (555)
T ss_pred ccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEE
Confidence 6789999998 421 11345689999999999764 689999999999999999999872 345689999999
Q ss_pred eCCcCCCCcchhHHhhcCC--ccCCceEEEEeccCCCCCCcc-eeecCC--ChhHHHHHH----HHccCCCCcchhhhhc
Q 002412 230 NTGEEEGLNGAHSFVTQHP--WSTTIRVAIDLEAMGIGGKSG-LFQAGP--HPWAVENFA----AAAKYPSGQVTAQDLF 300 (926)
Q Consensus 230 ~~~EE~gl~GS~~f~~~h~--~~~~v~a~iNLD~~G~gG~~~-lfq~g~--~~~li~~~~----~~a~~p~~~~l~~~~f 300 (926)
++|--...+|++.|++-.. .++++..+|.+|++|.+.... |..+.| +...+..+- ..+++-.-... .
T Consensus 272 t~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mHvsKpP~dnt~i~qffr~l~svAek~~~~v~---~- 347 (555)
T KOG2526|consen 272 TAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMHVSKPPSDNTVIAQFFRRLNSVAEKKNIEVV---T- 347 (555)
T ss_pred ccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEEccCCCCcchHHHHHHHHhhhhchhcceEEE---E-
Confidence 9999999999999996332 357999999999999874443 333322 233443332 23333221100 0
Q ss_pred ccCCCCC-----CCChHHHhhcCCCeEEEEEeeCCC--CCCCCCC-CCcCCCCHHHHHHHHHHHHHHHHH
Q 002412 301 ASGAITS-----ATDFQVYKEVAGLSGLDFAYTDKS--AVYHTKN-DKLDLLKPGSLQHLGENMLAFLLQ 362 (926)
Q Consensus 301 ~~g~ips-----~TD~~~F~~~~GIPgld~a~~~~~--~~YHT~~-Dt~d~id~~slq~~g~~~l~lv~~ 362 (926)
+...|.- .=.|.-|.. ..+|++.+...... +.-.+.. |+...+|..+|-+..+.+.+.+..
T Consensus 348 khkkInla~s~lAWEHErFsi-kR~pAfTLS~l~Sprdp~rnsi~~d~rsrldedtLi~ntRlIaEAla~ 416 (555)
T KOG2526|consen 348 KHKKINLASSRLAWEHERFSI-KRMPAFTLSTLPSPRDPARNSILLDLRSRLDEDTLIDNTRLIAEALAG 416 (555)
T ss_pred EeeeEeeccchhhhhhhhhhh-hcccceeeccCCCCcchhhccccccchhhhhhhhhhhhhhHHHHHHHH
Confidence 0001111 123666765 67999999876432 2444555 889999998888665555544443
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=98.85 E-value=1.5e-07 Score=106.59 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=97.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCCC----------
Q 002412 195 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI---------- 264 (926)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~---------- 264 (926)
.-|-||..||++++|++|.+++. ++..+++|+|+..||.|+.||+..+.. . +...+|.+|..-.
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i--~pd~~I~vDv~~~~d~~~~~~~~ 235 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V--SPDVAIVLDTACWAKNFDYGAAN 235 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c--CCCEEEEEeccCCCCCCCCCCCc
Confidence 34789999999999999999754 467999999999999999999987632 2 2345777775432
Q ss_pred -----CCCcceee-cCC--ChhHHHHHHHHccCCCCcchhhhhcccCCC-CCCCChHHHhhc-CCCeEEEEEeeCCCCCC
Q 002412 265 -----GGKSGLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAI-TSATDFQVYKEV-AGLSGLDFAYTDKSAVY 334 (926)
Q Consensus 265 -----gG~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~i-ps~TD~~~F~~~-~GIPgld~a~~~~~~~Y 334 (926)
+|+.+-+. .++ ++.+.+...+.++.- +.. +|.... ..+||-..|... .|+|.+.+..- .. +-
T Consensus 236 ~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~-~Ip-----~Q~~~~~ggGTDa~~~~~~~~Giptv~ig~p-~r-y~ 307 (344)
T PRK09961 236 HRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEI-GIP-----LQADMFSNGGTDGGAVHLTGTGVPTVVMGPA-TR-HG 307 (344)
T ss_pred ccccCCCceEEEccCCcCCCHHHHHHHHHHHHHc-CCC-----cEEEecCCCcchHHHHHHhCCCCCEEEechh-hh-cc
Confidence 22222122 122 566666665544321 111 111111 246898877542 68999987643 22 34
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 002412 335 HTKNDKLDLLKPGSLQHLGENMLAFLLQA 363 (926)
Q Consensus 335 HT~~Dt~d~id~~slq~~g~~~l~lv~~L 363 (926)
||+. +.++.+.+.++.+.+.+++..+
T Consensus 308 Hs~~---E~v~~~D~~~~~~Ll~~~i~~l 333 (344)
T PRK09961 308 HCAA---SIADCRDILQMIQLLSALIQRL 333 (344)
T ss_pred cChh---heEEHHHHHHHHHHHHHHHHHc
Confidence 8875 4556777777777777776554
No 69
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=98.85 E-value=2e-07 Score=105.58 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=98.6
Q ss_pred CCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCCC------------
Q 002412 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI------------ 264 (926)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~------------ 264 (926)
|-||..||++++|++|.+++. +++.+++++|+.-||.|+.||+.-+.+ . +...+|.+|..-+
T Consensus 176 alDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i--~pD~aI~vDv~~~~d~~~~~~~~lg 249 (350)
T TIGR03107 176 AWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F--NPDIFFAVDCSPAGDIYGDQGGKLG 249 (350)
T ss_pred ccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C--CCCEEEEEecCCcCCCCCCCccccC
Confidence 889999999999999999864 577899999999999999999975532 2 2237777775422
Q ss_pred CCCcceee-cCC--ChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChH--HHhhcCCCeEEEEEeeCCCCCCCCCCC
Q 002412 265 GGKSGLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQ--VYKEVAGLSGLDFAYTDKSAVYHTKND 339 (926)
Q Consensus 265 gG~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~--~F~~~~GIPgld~a~~~~~~~YHT~~D 339 (926)
.|+.+.+. .++ ++.+.+...+.|+. .+-. .|. .. ...+||-. .+.. .|+|.+.++-- -.+-||+.-
T Consensus 250 ~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~I~-~Q~-~~---~~gGtDa~~~~~~~-~Gvpt~~i~ip--~Ry~Hs~~e 320 (350)
T TIGR03107 250 EGTLLRFFDPGHIMLPRMKDFLLTTAEE-AGIK-YQY-YV---AKGGTDAGAAHLKN-SGVPSTTIGVC--ARYIHSHQT 320 (350)
T ss_pred CCceEEEecCCCCCCHHHHHHHHHHHHH-cCCC-cEE-ec---CCCCchHHHHHHhC-CCCcEEEEccC--cccccChhh
Confidence 13433222 233 67777766655432 1111 111 11 12356666 5554 79999987632 124588754
Q ss_pred CcCCCCHHHHHHHHHHHHHHHHHHH
Q 002412 340 KLDLLKPGSLQHLGENMLAFLLQAA 364 (926)
Q Consensus 340 t~d~id~~slq~~g~~~l~lv~~La 364 (926)
.++.+.+.++.+.+.+++..+.
T Consensus 321 ---~i~~~D~~~~~~Ll~~~i~~l~ 342 (350)
T TIGR03107 321 ---LYSIDDFLAAQAFLQAIVKKLD 342 (350)
T ss_pred ---eeeHHHHHHHHHHHHHHHHhcC
Confidence 4567788888888888877653
No 70
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=98.85 E-value=2.2e-08 Score=117.20 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCCCCCC----------CHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccc
Q 002412 87 FEAIKHVKALTELGPHPVG----------SDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRT 156 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vG----------S~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~ 156 (926)
+.+.+.|++|.+|.. +.+ .++..++.+|+.++++++|. +++ .
T Consensus 2 ~~~i~ll~~Lv~ipS-~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~--~------------------- 53 (447)
T TIGR01887 2 DEILEDLKELIRIDS-VEDLEEAKEGAPFGEGPKKALDKFLELAKRDGF------TTE--N------------------- 53 (447)
T ss_pred hHHHHHHHHhcCcCc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCc------eEE--E-------------------
Confidence 356788888988632 111 12345899999999999873 222 1
Q ss_pred ccccccceEEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHHc
Q 002412 157 LIYSDLNHIVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQW 217 (926)
Q Consensus 157 ~~y~~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~ 217 (926)
..|++++.... ...+.|++++|+|+||. ++|+.|++.|+++++++++.|.+.
T Consensus 54 -----~~~~~~~~~~~----~~~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~ 124 (447)
T TIGR01887 54 -----VDNYAGYAEYG----QGEEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKEL 124 (447)
T ss_pred -----ecCceEEEEeC----CCCCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHc
Confidence 11333222211 12357999999999974 489999999999999999999988
Q ss_pred cCCCCccEEEEEeCCcCCCCcchhHHhhc
Q 002412 218 AHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 218 ~~~p~~~I~Flf~~~EE~gl~GS~~f~~~ 246 (926)
+.+++++|.|+|+.+||.|+.|++.++.+
T Consensus 125 ~~~~~~~i~~~~~~dEE~g~~g~~~~l~~ 153 (447)
T TIGR01887 125 GLKLKKKIRFIFGTDEETGWACIDYYFEH 153 (447)
T ss_pred CCCCCCcEEEEEECCcccCcHhHHHHHHh
Confidence 77788999999999999999999999854
No 71
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=98.78 E-value=6.8e-08 Score=109.79 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEc
Q 002412 91 KHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQ 170 (926)
Q Consensus 91 ~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~ 170 (926)
+.+++|.++ |.+.| .+.++.+||.++|+++|. +++.+ .. ...|+++++.
T Consensus 3 ~~~~~L~~i-ps~s~--~E~~~a~~l~~~l~~~g~------~~~~~--~~--------------------~~~~vva~~~ 51 (363)
T TIGR01891 3 DIRRHLHEH-PELSF--EEFKTSSLIAEALESLGI------EVRRG--VG--------------------GATGVVATIG 51 (363)
T ss_pred HHHHHHhcC-CCCCC--chHHHHHHHHHHHHHcCC------ceEec--CC--------------------CCcEEEEEEe
Confidence 567888886 55554 446899999999999983 22221 00 2379999987
Q ss_pred CCCCCcCCCCEEEEeeecccccCC-----------------CCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCc
Q 002412 171 PKYASEAAENAILVSSHIDTVFAA-----------------EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (926)
Q Consensus 171 g~~~~~~~~~~VLl~AH~DSv~~s-----------------pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~E 233 (926)
+. .+.+.|++++|+|+||.. +|+ .+++|+++.+++.|.+.+.+++++|.|+|+.+|
T Consensus 52 ~~----~~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dE 124 (363)
T TIGR01891 52 GG----KPGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLADLLEGTVRLIFQPAE 124 (363)
T ss_pred CC----CCCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhchhhCCceEEEEEeecC
Confidence 63 234789999999999841 333 367899999999998766667889999999999
Q ss_pred CCCCcchhHHhhcCCccCCceEEEEeccC
Q 002412 234 EEGLNGAHSFVTQHPWSTTIRVAIDLEAM 262 (926)
Q Consensus 234 E~gl~GS~~f~~~h~~~~~v~a~iNLD~~ 262 (926)
|.+ .|++.++++. +.+++.++++.|..
T Consensus 125 E~~-~G~~~~~~~~-~~~~~d~~i~~e~~ 151 (363)
T TIGR01891 125 EGG-GGATKMIEDG-VLDDVDAILGLHPD 151 (363)
T ss_pred cCc-chHHHHHHCC-CCCCcCEEEEECCC
Confidence 986 7999998553 33456778887753
No 72
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=98.76 E-value=9.5e-08 Score=109.81 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceE
Q 002412 86 EFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHI 165 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NV 165 (926)
.+++.+.+++|.++ |-+. ..+.++.+||.++|+++|.+ .++.+ ...|+
T Consensus 12 ~~~~~~~~~~lv~i-~s~s--~~e~~~~~~l~~~l~~~G~~-----~~~~~------------------------~~~n~ 59 (395)
T TIGR03320 12 RGDMIRFLRDLVAI-PSES--GDEKRVAERIKEEMEKLGFD-----KVEID------------------------PMGNV 59 (395)
T ss_pred HHHHHHHHHHHHcC-CCCC--CchHHHHHHHHHHHHHhCCc-----EEEEC------------------------CCCCE
Confidence 36788889999986 3332 23458899999999999831 11111 22588
Q ss_pred EEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCcc
Q 002412 166 VLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNA 224 (926)
Q Consensus 166 i~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~ 224 (926)
++++ |. ..+.|++.+|+|+||. ++|+.|++.|+|++|.+++.|.+.+..++.+
T Consensus 60 ~~~~-g~-----~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~ 133 (395)
T TIGR03320 60 LGYI-GH-----GPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYT 133 (395)
T ss_pred EEEe-CC-----CCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCce
Confidence 8887 42 2367999999999974 3899999999999999999999877667789
Q ss_pred EEEEEeCCcCCC-CcchhHHhhc
Q 002412 225 VIFLFNTGEEEG-LNGAHSFVTQ 246 (926)
Q Consensus 225 I~Flf~~~EE~g-l~GS~~f~~~ 246 (926)
|+|++..+||.+ -.|++.++.+
T Consensus 134 i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 134 LLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEEecccccccCchHHHHHHHh
Confidence 999999999964 2344555533
No 73
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=98.76 E-value=1.2e-07 Score=109.19 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEE
Q 002412 87 FEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIV 166 (926)
Q Consensus 87 erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi 166 (926)
+++.+.+++|.++ |-+. ..+.++.+||.++++++|.+ .++.+ ...|++
T Consensus 13 ~~~~~~l~~Lv~i-ps~s--~~e~~~~~~l~~~l~~~g~~-----~~~~~------------------------~~~~v~ 60 (395)
T TIGR03526 13 GDMIRFLRDLVAI-PSES--GDEGRVALRIKQEMEKLGFD-----KVEID------------------------PMGNVL 60 (395)
T ss_pred HHHHHHHHHHhcC-CCCC--CchHHHHHHHHHHHHHcCCc-----eEEEc------------------------CCCcEE
Confidence 5778889999886 3332 33457889999999998731 01111 225888
Q ss_pred EEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccE
Q 002412 167 LRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (926)
Q Consensus 167 ~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (926)
+++ |. ..+.|++.+|+|+||. ++|+.|++.|++++|.+++.|.+.+..++.++
T Consensus 61 ~~~-g~-----~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v 134 (395)
T TIGR03526 61 GYI-GH-----GPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTL 134 (395)
T ss_pred EEe-CC-----CCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceE
Confidence 887 42 2357999999999984 38999999999999999999998776677899
Q ss_pred EEEEeCCcCC-CCcchhHHhhc
Q 002412 226 IFLFNTGEEE-GLNGAHSFVTQ 246 (926)
Q Consensus 226 ~Flf~~~EE~-gl~GS~~f~~~ 246 (926)
.|++..+||. +..|++.++++
T Consensus 135 ~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 135 LVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred EEEEecccccCCcHhHHHHHhc
Confidence 9999999993 44566666643
No 74
>PRK09864 putative peptidase; Provisional
Probab=98.73 E-value=5.7e-07 Score=101.89 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=95.5
Q ss_pred CCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccCCC------------
Q 002412 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAMGI------------ 264 (926)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~G~------------ 264 (926)
|-||..||++++|++|.+.+ ++.+++|+|+.-||.|+.||+.-+.+. .. ..+|.+|..-+
T Consensus 173 alDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~i--~P--DiaIavDvt~~~d~p~~~~~~~~ 244 (356)
T PRK09864 173 ALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEHI--KP--DVVIVLDTAVAGDVPGIDNIKYP 244 (356)
T ss_pred eCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhcC--CC--CEEEEEecccCCCCCCCcccccc
Confidence 78999999999999999964 679999999999999999999876332 22 34777774321
Q ss_pred ----CCCcc-eeecCC--ChhHHHHHHHHccCCCCcchhhhhcccCCCC-CCCChHHHhhc-CCCeEEEEEeeCCCCCCC
Q 002412 265 ----GGKSG-LFQAGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAIT-SATDFQVYKEV-AGLSGLDFAYTDKSAVYH 335 (926)
Q Consensus 265 ----gG~~~-lfq~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ip-s~TD~~~F~~~-~GIPgld~a~~~~~~~YH 335 (926)
+|+.+ .+..++ ++.+.+...+.|+. .+.. +|....+ .+||-..+... .|+|...++.- . .+-|
T Consensus 245 ~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip-----~Q~~~~~~ggTDa~~i~~~~~Gvpt~~isiP-~-RY~H 316 (356)
T PRK09864 245 LKLGQGPGLMLFDKRYFPNQKLVAALKSCAAH-NDLP-----LQFSTMKTGATDGGRYNVMGGGRPVVALCLP-T-RYLH 316 (356)
T ss_pred cccCCCCeEEEccCCccCCHHHHHHHHHHHHH-cCCC-----ceEEEcCCCCchHHHHHHhCCCCcEEEEeec-c-CcCC
Confidence 23333 222233 57777666554421 1111 1211122 46777766542 68999877642 2 2468
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHH
Q 002412 336 TKNDKLDLLKPGSLQHLGENMLAFLLQA 363 (926)
Q Consensus 336 T~~Dt~d~id~~slq~~g~~~l~lv~~L 363 (926)
|+.- .++.+.++++.+.+.+++..+
T Consensus 317 s~~e---~~~~~D~e~~~~Ll~~~~~~l 341 (356)
T PRK09864 317 ANSG---MISKADYDALLTLIRDFLTTL 341 (356)
T ss_pred Ccce---EeEHHHHHHHHHHHHHHHHhc
Confidence 8765 455677777777777777665
No 75
>PRK08737 acetylornithine deacetylase; Provisional
Probab=98.66 E-value=1.8e-07 Score=106.79 Aligned_cols=130 Identities=20% Similarity=0.206 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccce
Q 002412 86 EFEAIKHVKALTELGPHP-VGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNH 164 (926)
Q Consensus 86 ~erA~~~L~~L~~igpr~-vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~N 164 (926)
.+++.+.|++|.+|.... .++.++.++.+|+.++|+ | ++++++. . + .+..|
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g------~~~~~~~--~--------~----------~~~~n 56 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--G------FQVEVID--H--------G----------AGAVS 56 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--C------CEEEEec--C--------C----------CCceE
Confidence 457889999999984321 122223688999999985 3 2344331 1 0 03468
Q ss_pred EEEEEcCCCCCcCCCCEEEEeeecccccC-------------------CCCCCCchhHHHHHHHHHHHHHHccCCCCccE
Q 002412 165 IVLRIQPKYASEAAENAILVSSHIDTVFA-------------------AEGAGDCSSCVAVMLELARAMSQWAHGFKNAV 225 (926)
Q Consensus 165 Vi~~i~g~~~~~~~~~~VLl~AH~DSv~~-------------------spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I 225 (926)
++++ .|+ +.|++++|+|+||. ++|+.|+++|+|+||.+++. ++.+|
T Consensus 57 li~~-~g~-------~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v 121 (364)
T PRK08737 57 LYAV-RGT-------PKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDA 121 (364)
T ss_pred EEEE-cCC-------CeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCE
Confidence 8886 331 36999999999984 37999999999999999874 35689
Q ss_pred EEEEeCCcCCCC-cchhHHhhcCCccCCceEEEEecc
Q 002412 226 IFLFNTGEEEGL-NGAHSFVTQHPWSTTIRVAIDLEA 261 (926)
Q Consensus 226 ~Flf~~~EE~gl-~GS~~f~~~h~~~~~v~a~iNLD~ 261 (926)
.|+|+.+||.|. .|++.++++.. +..++|..|.
T Consensus 122 ~~~~~~dEE~g~~~g~~~~~~~~~---~~~~~iv~Ep 155 (364)
T PRK08737 122 AFLFSSDEEANDPRCVAAFLARGI---PYEAVLVAEP 155 (364)
T ss_pred EEEEEcccccCchhhHHHHHHhCC---CCCEEEEcCC
Confidence 999999999987 68888886532 2345555543
No 76
>PLN02693 IAA-amino acid hydrolase
Probab=98.50 E-value=1.8e-06 Score=100.98 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002412 88 EAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (926)
Q Consensus 88 rA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~ 167 (926)
.+.+..++|-+ +|--|-++.++.+||.++|+++|. +++.. . ...|+++
T Consensus 48 ~~~~~r~~lh~---~PE~s~~E~~ta~~i~~~L~~~G~------~~~~~---~--------------------~~~~via 95 (437)
T PLN02693 48 WMVRIRRKIHE---NPELGYEEFETSKLIRSELDLIGI------KYRYP---V--------------------AITGIIG 95 (437)
T ss_pred HHHHHHHHHHh---CCCCCCchHHHHHHHHHHHHHCCC------eeEec---C--------------------CCcEEEE
Confidence 34455555555 344455556899999999999983 22211 0 2479999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccCC-----------CC---CCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCc
Q 002412 168 RIQPKYASEAAENAILVSSHIDTVFAA-----------EG---AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (926)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~s-----------pG---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~E 233 (926)
++.+. +.+.|++.+|+|+||.. +| +.|.++++|+++.+++.|++.+.+.+.+|.|+|..+|
T Consensus 96 ~~g~~-----~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdE 170 (437)
T PLN02693 96 YIGTG-----EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAE 170 (437)
T ss_pred EECCC-----CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcc
Confidence 98322 34789999999999852 12 6788889999999999998866566789999999999
Q ss_pred CCCCcchhHHhhcC
Q 002412 234 EEGLNGAHSFVTQH 247 (926)
Q Consensus 234 E~gl~GS~~f~~~h 247 (926)
| +..|++.++++.
T Consensus 171 E-~~~Ga~~~i~~g 183 (437)
T PLN02693 171 E-GLSGAKKMREEG 183 (437)
T ss_pred c-chhhHHHHHHCC
Confidence 9 457999998553
No 77
>PLN02280 IAA-amino acid hydrolase
Probab=98.46 E-value=3.2e-06 Score=99.89 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=91.0
Q ss_pred HHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEE
Q 002412 89 AIKHVKALTE-LGPHPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVL 167 (926)
Q Consensus 89 A~~~L~~L~~-igpr~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~ 167 (926)
..+.|++|.+ +-.+|.-+.++.++.+||.++|+++|. +++.. . ...|+++
T Consensus 95 ~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~------~~~~~---~--------------------~~~~vva 145 (478)
T PLN02280 95 TVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGI------MYRYP---L--------------------AKTGIRA 145 (478)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCC------eEEec---C--------------------CCCEEEE
Confidence 3444555544 212333344556899999999999983 33221 0 2369999
Q ss_pred EEcCCCCCcCCCCEEEEeeecccccCCC-----------C---CCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCc
Q 002412 168 RIQPKYASEAAENAILVSSHIDTVFAAE-----------G---AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGE 233 (926)
Q Consensus 168 ~i~g~~~~~~~~~~VLl~AH~DSv~~sp-----------G---A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~E 233 (926)
++ |+ ..++.|++.+|+|+||... | +.|...++|++|.+++.|.+.+.+++.+|+|+|..+|
T Consensus 146 ~~-g~----~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdE 220 (478)
T PLN02280 146 WI-GT----GGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAE 220 (478)
T ss_pred EE-CC----CCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccc
Confidence 98 53 1237899999999998521 1 2234459999999999998766677889999999999
Q ss_pred CCCCcchhHHhhcCCccCCceEEEE
Q 002412 234 EEGLNGAHSFVTQHPWSTTIRVAID 258 (926)
Q Consensus 234 E~gl~GS~~f~~~h~~~~~v~a~iN 258 (926)
|.| .|++.++++ ...+++.+++-
T Consensus 221 E~g-~Ga~~li~~-g~~~~~d~~~~ 243 (478)
T PLN02280 221 EAG-NGAKRMIGD-GALDDVEAIFA 243 (478)
T ss_pred ccc-chHHHHHHC-CCCcCCCEEEE
Confidence 997 499999854 33333444443
No 78
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=98.46 E-value=7.8e-07 Score=99.95 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhcc-ccCCceeEEEEEEeccCCcccccccccccccccccc
Q 002412 83 GFSEFEAIKHVKALTELGPHPVGSDALDRALQYVFAAAQKIKE-TKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSD 161 (926)
Q Consensus 83 ~fs~erA~~~L~~L~~igpr~vGS~~~~~a~~yL~~~l~~ig~-~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~ 161 (926)
..+.||+.+....|++ -|-..|++++..-.++|..-|.++-. +.++ .|.+..+ +. ...| +
T Consensus 4 ~is~e~v~~lt~~LV~-~~SvtgT~GE~a~ad~l~~vL~~~pYFqehp-----ed~~~~p-----i~-------nDpy-g 64 (553)
T COG4187 4 RISSERVRALTLSLVS-WPSVTGTPGEGAFADRLLGVLGELPYFQEHP-----EDLWLQP-----IH-------NDPY-G 64 (553)
T ss_pred hhhHHHHHHHHHHHee-ccccCCCcccccHHHHHHHHHhcCchhhhCh-----HhhcccC-----CC-------CCcc-c
Confidence 3568999999999998 47889999998889999999887742 1111 1222111 00 1123 5
Q ss_pred cceEEEEEcCCCCCcCCCCEEEEeeecccccC------------------------------------------CCCCCC
Q 002412 162 LNHIVLRIQPKYASEAAENAILVSSHIDTVFA------------------------------------------AEGAGD 199 (926)
Q Consensus 162 ~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~------------------------------------------spGA~D 199 (926)
..||.+-++|. ++++.|++.+|+|+|.. ++|+.|
T Consensus 65 R~nv~AlVrg~----~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~D 140 (553)
T COG4187 65 RRNVFALVRGG----TSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALD 140 (553)
T ss_pred cceeEEEEecC----CCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchh
Confidence 68999999985 57889999999999964 399999
Q ss_pred chhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCc-----cCCceEEEEeccCCC
Q 002412 200 CSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-----STTIRVAIDLEAMGI 264 (926)
Q Consensus 200 d~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~-----~~~v~a~iNLD~~G~ 264 (926)
+++|.|+-|..++.+++. ...+.+|.|+.+.+||....|.+.-+...+. .-...++||+|.++.
T Consensus 141 MKsGlav~la~L~~fa~~-~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~ 209 (553)
T COG4187 141 MKSGLAVHLACLEEFAAR-TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSD 209 (553)
T ss_pred hhhhhHHHHHHHHHHhhC-CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccC
Confidence 999999999999999886 4577899999999999888887776544331 235689999998875
No 79
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=98.33 E-value=3.2e-06 Score=91.27 Aligned_cols=171 Identities=18% Similarity=0.228 Sum_probs=128.6
Q ss_pred CCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCc-cCCceEE
Q 002412 178 AENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPW-STTIRVA 256 (926)
Q Consensus 178 ~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~-~~~v~a~ 256 (926)
.++.||+++|..+.. =|+||-||+|.+.-+++.|+.. +.+.+-.|+|.. +-.||-.|..+|.. .++++.-
T Consensus 177 ~~~eiLlst~lCHPS---maNdn~SG~all~~lak~l~~~--ktrysYRfvf~P----~TiGsi~wLsrnee~lkhvk~G 247 (435)
T COG4310 177 SKDEILLSTYLCHPS---MANDNLSGLALLTFLAKALKSL--KTRYSYRFVFAP----ETIGSIVWLSRNEECLKHVKHG 247 (435)
T ss_pred ccceeeeeecccChh---hccCccchHHHHHHHHHHHHhc--cceeeEEEEecc----cccchhhhHhcchhHHhhhhcc
Confidence 566799999999864 7899999999999999999874 467899999985 56899999988865 4799999
Q ss_pred EEeccCCCCCCcceeecCCChhHHHHHHHH-ccCCCCcchhhhhcccCCCCCCCChHHHhhcCCCeEEEEE-------ee
Q 002412 257 IDLEAMGIGGKSGLFQAGPHPWAVENFAAA-AKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFA-------YT 328 (926)
Q Consensus 257 iNLD~~G~gG~~~lfq~g~~~~li~~~~~~-a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a-------~~ 328 (926)
+.+-+.|.+|....-++.-...+++..+.. ..|-. +-. .++ ..+|.++|-+.|.. ||+++- -+
T Consensus 248 lVlsClGD~g~~nykrtrrgna~iDki~~~tl~~~~-s~~--~~~--dF~p~G~DERQf~s----Pg~NLpvg~~~Rs~y 318 (435)
T COG4310 248 LVLSCLGDGGGPNYKRTRRGNALIDKIALHTLKHCG-SNF--KAA--DFLPYGSDERQFCS----PGFNLPVGGLQRSRY 318 (435)
T ss_pred eEEEEecCCCCccceeccccchHHHHHHHHHHhcCC-cCc--eee--ecccCCCchhhccC----CCcCCchhhhhHhhc
Confidence 999999988766655543334555554432 22222 111 122 36899999999975 444443 24
Q ss_pred CCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002412 329 DKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (926)
Q Consensus 329 ~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La~~ 366 (926)
++-.-|||..|+.+.|+++.|..--+.++.++..+-+.
T Consensus 319 G~f~~YHtSaDnL~fi~~e~L~~s~~~~memI~~lE~N 356 (435)
T COG4310 319 GDFDGYHTSADNLDFISPEGLAGSFQMMMEMILNLEIN 356 (435)
T ss_pred CCCccccCccccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 44568999999999999998888888888888877664
No 80
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.94 E-value=0.0001 Score=82.72 Aligned_cols=141 Identities=21% Similarity=0.312 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCccccccccccccccccc
Q 002412 85 SEFEAIKHVKALTELGPHPVGS----DALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYS 160 (926)
Q Consensus 85 s~erA~~~L~~L~~igpr~vGS----~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~ 160 (926)
..++..+.|++..+|.. ...- .+-.+..+|+.++++++|.. ++. .+. |.....+| . +.
T Consensus 14 ~~de~~~~L~e~v~iqs-vs~dp~~r~~v~rm~~~~~~~l~~lG~~------~~l--~dl--g~q~~~~g----~---~v 75 (473)
T KOG2276|consen 14 NKDEFINTLREAVAIQS-VSADPTKRLEVRRMADWLRDYLTKLGAP------LEL--VDL--GYQSLPDG----Q---IV 75 (473)
T ss_pred cHHHHHHHHHHHhcccc-cccCccccHHHHHHHHHHHHHHHHhCCc------eee--eec--ccCCCCCC----c---cc
Confidence 45788889999988743 2222 23358899999999999932 221 111 10000010 0 11
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccC---------------------CCCCCCchhHHHHHHHHHHHHHHccC
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFA---------------------AEGAGDCSSCVAVMLELARAMSQWAH 219 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~---------------------spGA~Dd~sgva~~LE~ar~L~~~~~ 219 (926)
...-++--..|+ +++++.+++-.|||.+|. ++|++||+.-|+.-.++++++.+.|.
T Consensus 76 ~lPpvvl~~~Gs---dp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~ 152 (473)
T KOG2276|consen 76 PLPPVVLGVLGS---DPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGI 152 (473)
T ss_pred ccChhhhhcccC---CCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCc
Confidence 112222222354 467889999999999986 49999999999999999999999998
Q ss_pred CCCccEEEEEeCCcCCCCcchhHHhhc
Q 002412 220 GFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 220 ~p~~~I~Flf~~~EE~gl~GS~~f~~~ 246 (926)
.++.+|+|+|-+-||.|..|-...++.
T Consensus 153 ~lpvnv~f~~EgmEEsgS~~L~~l~~~ 179 (473)
T KOG2276|consen 153 DLPVNVVFVFEGMEESGSEGLDELIEK 179 (473)
T ss_pred cccceEEEEEEechhccCccHHHHHHH
Confidence 999999999999999998887776543
No 81
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.81 E-value=6.3e-05 Score=83.49 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=83.8
Q ss_pred CCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEeccC------CCC-----
Q 002412 197 AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLEAM------GIG----- 265 (926)
Q Consensus 197 A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD~~------G~g----- 265 (926)
+.||..||++++|++|.+++. ..+.+++|+|+..||.|+.||+..+.+. +...+|.+|.. |..
T Consensus 132 alDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~i----~PD~ai~vD~~~a~d~~~~~~~~~~ 205 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFRI----KPDIAIAVDVTPAGDTPGSDEKEQG 205 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHHH-----CSEEEEEEEEEESSSTTSTTTTSC
T ss_pred eCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeeccccc----CCCEEEEEeeeccCCCCCCchhhcc
Confidence 679999999999999999874 3559999999999999999999877431 23455555542 221
Q ss_pred ---CCcceee-cCC--ChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChHHHhhc-CCCeEEEEEeeCCCCCCCCCC
Q 002412 266 ---GKSGLFQ-AGP--HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEV-AGLSGLDFAYTDKSAVYHTKN 338 (926)
Q Consensus 266 ---G~~~lfq-~g~--~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~-~GIPgld~a~~~~~~~YHT~~ 338 (926)
|+.+.+. .++ ++.+.+...+.|+. .+...-.+.+. ..+||-..+... .|+|...++.- -.+.||+.
T Consensus 206 lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~-~~Ip~Q~~~~~----~ggTDa~~~~~~~~Gi~t~~i~iP--~ry~Hs~~ 278 (292)
T PF05343_consen 206 LGKGPVIRVGDSSMIPNPKLVDKLREIAEE-NGIPYQREVFS----GGGTDAGAIQLSGGGIPTAVISIP--CRYMHSPV 278 (292)
T ss_dssp TTS-EEEEEEETTEESHHHHHHHHHHHHHH-TT--EEEEEES----SSSSTHHHHHTSTTSSEEEEEEEE--EBSTTSTT
T ss_pred CCCCcEEEEccCCCCCCHHHHHHHHHHHHH-cCCCeEEEecC----CcccHHHHHHHcCCCCCEEEEecc--cccCCCcc
Confidence 2323222 222 45666666554431 11111112222 357998888752 58999887742 23579987
Q ss_pred CCcC
Q 002412 339 DKLD 342 (926)
Q Consensus 339 Dt~d 342 (926)
-+.+
T Consensus 279 e~~~ 282 (292)
T PF05343_consen 279 EVID 282 (292)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6655
No 82
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0015 Score=75.28 Aligned_cols=187 Identities=14% Similarity=0.181 Sum_probs=122.1
Q ss_pred ccceEEEEEcCCCCC---cCCCCEEEEeeeccccc----CCCCCCCchhHHHHHHHHHHHHHHcc--CCCCccEEEEEeC
Q 002412 161 DLNHIVLRIQPKYAS---EAAENAILVSSHIDTVF----AAEGAGDCSSCVAVMLELARAMSQWA--HGFKNAVIFLFNT 231 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~---~~~~~~VLl~AH~DSv~----~spGA~Dd~sgva~~LE~ar~L~~~~--~~p~~~I~Flf~~ 231 (926)
+.+||..-+++-... +...++++..+-+|+.. .++||.---.+....|.++|+|++.+ ...++++.|+|+.
T Consensus 156 ~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~r~pai~nl~rnV~f~~f~ 235 (596)
T KOG2657|consen 156 HSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALKRQPAINNLNRNVFFAFFN 235 (596)
T ss_pred CCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhccCcccccccceeEEEEee
Confidence 456777766553211 22367899999999964 37898888999999999999998742 3578999999999
Q ss_pred CcCCCCcchhHHhhcCC-----cc-CC---ceEEEEeccCCCC--CCcceeecCC-Ch----h---HHHHHHHH-ccCCC
Q 002412 232 GEEEGLNGAHSFVTQHP-----WS-TT---IRVAIDLEAMGIG--GKSGLFQAGP-HP----W---AVENFAAA-AKYPS 291 (926)
Q Consensus 232 ~EE~gl~GS~~f~~~h~-----~~-~~---v~a~iNLD~~G~g--G~~~lfq~g~-~~----~---li~~~~~~-a~~p~ 291 (926)
||-.+.+||..++-+.. .+ ++ +..++.+-.+|-+ ++-.++..+- .. . .++.+++. +.|++
T Consensus 236 get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv~nqtld~L~~~ekSlrs~~f 315 (596)
T KOG2657|consen 236 GETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSVKNQTLDVLDRIEKSLRSHAF 315 (596)
T ss_pred cceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhHHHHHHHHHHHHHhcccccCe
Confidence 99999999998874432 21 33 6777777776642 2222343221 11 1 22333332 12333
Q ss_pred CcchhhhhcccCCCCCCCChHHHhhcCCCeEEEEEeeCCC---CCCCCCCCCcCCCCHHHH
Q 002412 292 GQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKS---AVYHTKNDKLDLLKPGSL 349 (926)
Q Consensus 292 ~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~---~~YHT~~Dt~d~id~~sl 349 (926)
. .+.++- ++.-+|..+=++..+...++.++-++-++.. .+||+.+|+.++++...-
T Consensus 316 ~-ll~~s~-~s~~lPPsSlqsFlR~dpn~saVvLad~~~~f~NKyYhSilDdaeNin~sy~ 374 (596)
T KOG2657|consen 316 D-LLKPSG-SSDRLPPSSLQSFLRADPNVSAVVLADYGKEFENKYYHSILDDAENINDSYE 374 (596)
T ss_pred e-eecCCC-CCCCCChHHHHHHHhhCCCcceEEeccCCchhhhhhhhhhhcchhhccchhh
Confidence 2 111111 1224666666666665578999998876533 389999999999998654
No 83
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=96.27 E-value=0.22 Score=59.61 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=114.1
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcch
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS 240 (926)
++.|+.+.++... ....|.+++.+-+++.. | .-|..|++.+|.++|.+++... -.++|+|++.++| ..|.
T Consensus 2 ~G~nvy~i~rapR--~d~tEaivl~~~~~~~~---~-~~n~~~v~l~lal~~~~~~~~~-wsKDii~l~~~~~---~~g~ 71 (504)
T PF04114_consen 2 SGTNVYGILRAPR--GDGTEAIVLVVPWRDSD---G-EYNAGGVALALALARYFRRQSY-WSKDIIFLFTDDE---LAGM 71 (504)
T ss_pred CceEEEEEEecCC--CCCceeEEEEEecCCCC---c-ccchhhHHHHHHHHHHhhhchh-hhccEEEEecCCc---chHH
Confidence 4589999887643 35678899999988653 3 4459999999999999998653 3799999999765 4688
Q ss_pred hHHhhcCC-----------c---cCCceEEEEeccCCCCCCcc-eeecCCC-----hhHHHHHHHHccCC---CCcc---
Q 002412 241 HSFVTQHP-----------W---STTIRVAIDLEAMGIGGKSG-LFQAGPH-----PWAVENFAAAAKYP---SGQV--- 294 (926)
Q Consensus 241 ~~f~~~h~-----------~---~~~v~a~iNLD~~G~gG~~~-lfq~g~~-----~~li~~~~~~a~~p---~~~~--- 294 (926)
++|++++- . +..+++.+|+|-.+...... +.-.|.| -.+++...+.+.+. .+..
T Consensus 72 ~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~gi~~~~~~~~ 151 (504)
T PF04114_consen 72 QAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKEGIPMGVSLHL 151 (504)
T ss_pred HHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhcCCCccccccc
Confidence 88886641 1 23689999999887654333 2222433 35565544332211 0000
Q ss_pred -----------------hhhhhcccCCCCCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHH
Q 002412 295 -----------------TAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENML 357 (926)
Q Consensus 295 -----------------l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l 357 (926)
+..-+.+.+.-....+|..|.+ -+|.++.+.-.... .+ . .....+.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~~-y~I~aiTl~~~~~~------~~--~---~~~~~~~gr~~E 219 (504)
T PF04114_consen 152 QPSDWHSNSDYESRLKTLLRGMLNQALGGPTGPHGAFLR-YRIDAITLRGVKST------GP--G---PHDFTAFGRILE 219 (504)
T ss_pred cccccccccchHHHHHHHHHHHHHhccCCCCCCchhhhh-cCccEEEEecccCC------CC--C---CcCHHHHHHHHH
Confidence 0001111111113456888988 68999988322111 11 0 123557888888
Q ss_pred HHHHHHHcCC
Q 002412 358 AFLLQAASST 367 (926)
Q Consensus 358 ~lv~~La~~~ 367 (926)
.++|.+-|-.
T Consensus 220 ~~~RslNNLl 229 (504)
T PF04114_consen 220 GIFRSLNNLL 229 (504)
T ss_pred HHHHHHHHHH
Confidence 8888887743
No 84
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=95.74 E-value=0.019 Score=66.74 Aligned_cols=60 Identities=17% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCchhHHHHHHHHHHHHHHcc-CCCCccEEEEEeCCcCCCCcchhHHhhcCCccCCceEEEEec
Q 002412 198 GDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQHPWSTTIRVAIDLE 260 (926)
Q Consensus 198 ~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~Flf~~~EE~gl~GS~~f~~~h~~~~~v~a~iNLD 260 (926)
.||.+|++.++++++.+.... .-+..+|.+.|+++||.|+.|++.|.-. .-.+....++|
T Consensus 143 aD~kAGia~i~~al~~~~~~~~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a---~f~a~~ay~iD 203 (414)
T COG2195 143 ADDKAGIAEIMTALSVLREKHPEIPHGGIRGGFSPDEEIGGRGAANKDVA---RFLADFAYTLD 203 (414)
T ss_pred CcchhHHHHHHHHHHHHhhcCccccccCeEEEecchHHhhhhhhhhccHH---hhhcceeEecC
Confidence 488899999999999999653 3456789999999999999999988632 22455666777
No 85
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=95.22 E-value=0.39 Score=55.75 Aligned_cols=125 Identities=18% Similarity=0.278 Sum_probs=89.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccccCCceeEEEEEEeccCCcccccccccccccccccccceEEEEEcCCCCCcCCCCE
Q 002412 102 HPVGSDALDRALQYVFAAAQKIKETKHWEVDVEVDFFHAKSGANRLVSGAFMGRTLIYSDLNHIVLRIQPKYASEAAENA 181 (926)
Q Consensus 102 r~vGS~~~~~a~~yL~~~l~~ig~~~~~~~~ve~d~~~~~~g~~~~~gg~~~~~~~~y~~~~NVi~~i~g~~~~~~~~~~ 181 (926)
+|-=+-++.++.+||.+.|+++|. ++ ++ . .+ ..+-|++.++|. .+.+.
T Consensus 24 ~PEL~f~E~~Ta~~i~~~L~~~g~------~~-~~---~-------~~-----------~~TGvva~~~~g----~~g~t 71 (392)
T COG1473 24 HPELGFEEYRTAAYIAEKLEELGF------EV-VE---V-------GG-----------GKTGVVATLKGG----KPGPT 71 (392)
T ss_pred CCccchhHHHHHHHHHHHHHHcCC------ee-Ee---c-------cC-----------CceEEEEEEcCC----CCCCE
Confidence 455555667999999999999983 21 11 0 00 236789999865 34459
Q ss_pred EEEeeecccccC-----------CCC----CCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHhhc
Q 002412 182 ILVSSHIDTVFA-----------AEG----AGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFVTQ 246 (926)
Q Consensus 182 VLl~AH~DSv~~-----------spG----A~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~~~ 246 (926)
|.+-|-||-.|. .+| .+-| .=.+++|-+++.|++....++.+|+|+|-.+||.+- |++..+++
T Consensus 72 IalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~-Ga~~mi~~ 149 (392)
T COG1473 72 IALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGG-GAKAMIED 149 (392)
T ss_pred EEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccc-cHHHHHhc
Confidence 999999999984 244 2222 236888999999998656789999999999999876 89888854
Q ss_pred CCccCC-ceEEEEecc
Q 002412 247 HPWSTT-IRVAIDLEA 261 (926)
Q Consensus 247 h~~~~~-v~a~iNLD~ 261 (926)
-. .++ +.+++-+.-
T Consensus 150 G~-~~~~vD~v~g~H~ 164 (392)
T COG1473 150 GV-FDDFVDAVFGLHP 164 (392)
T ss_pred CC-ccccccEEEEecC
Confidence 32 334 667666654
No 86
>PRK02813 putative aminopeptidase 2; Provisional
Probab=88.66 E-value=1.4 Score=51.91 Aligned_cols=141 Identities=15% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCc---chhH-----------HhhcCC-----ccCCceE
Q 002412 195 EGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLN---GAHS-----------FVTQHP-----WSTTIRV 255 (926)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~---GS~~-----------f~~~h~-----~~~~v~a 255 (926)
.++-||-.||.+++|+++.+.. +.++++++++-||.|+. ||+. -..... ..-.-..
T Consensus 230 s~~lDnr~~~~~~l~al~~~~~-----~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~i~~s~ 304 (428)
T PRK02813 230 SGRLDNLSSCHAGLEALLAAAS-----DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRALARSF 304 (428)
T ss_pred EecchhHHHHHHHHHHHHhcCC-----CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHhhCCCe
Confidence 4678999999999999986532 67999999999999988 7774 110000 1123356
Q ss_pred EEEeccCCCC------------------CCcceee---c-CCChhHHHHHHH---HccCCCCcchhhhhcccCCCCCCCC
Q 002412 256 AIDLEAMGIG------------------GKSGLFQ---A-GPHPWAVENFAA---AAKYPSGQVTAQDLFASGAITSATD 310 (926)
Q Consensus 256 ~iNLD~~G~g------------------G~~~lfq---~-g~~~~li~~~~~---~a~~p~~~~l~~~~f~~g~ips~TD 310 (926)
+|.+|++-+. |..+-+. . .+++.....+.+ .+.-|+ |.....+-.|++||
T Consensus 305 ~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~-----Q~~v~~~d~~gGst 379 (428)
T PRK02813 305 LISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPY-----QEFVNRSDMPCGST 379 (428)
T ss_pred EEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCccH
Confidence 7777765321 2211111 0 123333333333 223332 22122234567899
Q ss_pred hHHHhh-cCCCeEEEEEeeCCCCCCCCCCCCcCCCCHH
Q 002412 311 FQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPG 347 (926)
Q Consensus 311 ~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~ 347 (926)
-.++.. ..|+|.+|+.-- --.-|++..+...-|..
T Consensus 380 ig~i~~s~~Gi~tvdiGiP--~l~MHS~~E~~~~~D~~ 415 (428)
T PRK02813 380 IGPITAARLGIRTVDVGAP--MLAMHSARELAGVKDHA 415 (428)
T ss_pred HHHHHHhCCCCcEEEeChh--hcccccHHHHccHHHHH
Confidence 888865 479999998631 12468888777655544
No 87
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=86.21 E-value=4.8 Score=47.97 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=88.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHcc-CCCCccEEEEEeCCcCCCCcchhHHhhcC-Cc-------cCCce-----------
Q 002412 195 EGAGDCSSCVAVMLELARAMSQWA-HGFKNAVIFLFNTGEEEGLNGAHSFVTQH-PW-------STTIR----------- 254 (926)
Q Consensus 195 pGA~Dd~sgva~~LE~ar~L~~~~-~~p~~~I~Flf~~~EE~gl~GS~~f~~~h-~~-------~~~v~----------- 254 (926)
.++.||-.||.+++|+++...... ..+....++++++-||.|..|++.-.... +. +....
T Consensus 247 s~rlDnr~~~~~~l~al~~~~~~~~~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~~~~~ 326 (465)
T PTZ00371 247 SPRLDNLGSSFCAFKALTEAVESLGENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDSFAKL 326 (465)
T ss_pred EecchhHHHHHHHHHHHHhccccccCCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhHHHHH
Confidence 467899999999999998764310 11334455555999999998887643211 11 01111
Q ss_pred ----EEEEeccCCC------------------CCCcceee----cCCChhHHHHHHHHc---cCCCCcchhhhhcccCCC
Q 002412 255 ----VAIDLEAMGI------------------GGKSGLFQ----AGPHPWAVENFAAAA---KYPSGQVTAQDLFASGAI 305 (926)
Q Consensus 255 ----a~iNLD~~G~------------------gG~~~lfq----~g~~~~li~~~~~~a---~~p~~~~l~~~~f~~g~i 305 (926)
.+|..|++-+ +|..+-+. ..+++.+...+.+.+ .-|+ |.....+-.
T Consensus 327 ~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~~~~a~i~~la~~~~Ip~-----Q~~~~~~d~ 401 (465)
T PTZ00371 327 MARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNGVTASLLKAIAKKANIPI-----QEFVVKNDS 401 (465)
T ss_pred HhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCHHHHHHHHHHHHHcCCCE-----EEEEecCCC
Confidence 7888886532 12222121 112444444444332 2332 221222346
Q ss_pred CCCCChHHHhh-cCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Q 002412 306 TSATDFQVYKE-VAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLL 361 (926)
Q Consensus 306 ps~TD~~~F~~-~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~ 361 (926)
|++||-.++.. ..|+|.+|+.-- --.-|++..+...-|.. ++.+.+.++..
T Consensus 402 ~~GsTig~i~~s~~Gi~tvDiGiP--~l~MHS~rE~~~~~D~~---~~~~l~~af~~ 453 (465)
T PTZ00371 402 PCGSTIGPILSSNLGIRTVDIGIP--QLAMHSIREMCGVVDIY---YLVKLIKAFFT 453 (465)
T ss_pred CCcchHHHHHHhCCCCcEEEechh--hcccccHHHHccHHHHH---HHHHHHHHHHH
Confidence 77888888865 479999998631 22469988877765554 33344444433
No 88
>PRK02256 putative aminopeptidase 1; Provisional
Probab=77.61 E-value=3.2 Score=49.32 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=39.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcchhHHh
Q 002412 194 AEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGAHSFV 244 (926)
Q Consensus 194 spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS~~f~ 244 (926)
+.++-||-.||.+++|+++... .++..+++++++-||.|+.|++.-.
T Consensus 255 ~s~rLDNr~~~~~~leal~~~~----~~~~~~~~~~~dqEEVGs~ga~gA~ 301 (462)
T PRK02256 255 GAYGQDDRVCAYTSLEALLELE----NPEKTAVVLLVDKEEIGSEGNTGAQ 301 (462)
T ss_pred eccccccHHHHHHHHHHHHhcc----cCCCeEEEEEEcccccCCcchhhhc
Confidence 3678999999999999998653 3567899999999999988776643
No 89
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.86 E-value=41 Score=40.73 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=67.0
Q ss_pred ccceEEEEEcCCCCCcCCCCEEEEeeecccccCCCCCCCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcCCCCcch
Q 002412 161 DLNHIVLRIQPKYASEAAENAILVSSHIDTVFAAEGAGDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEEEGLNGA 240 (926)
Q Consensus 161 ~~~NVi~~i~g~~~~~~~~~~VLl~AH~DSv~~spGA~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE~gl~GS 240 (926)
++.||.+.+++.. ....+.+++..-|+.-. |. |..|++.++..++.+++... -.++|+|+++++ ...|-
T Consensus 119 ~G~NvyGilRAPR--gdgtEsivl~vP~~~~~---~~--~~~~v~l~lsla~~f~r~~y-WsKDII~v~~d~---~~~g~ 187 (617)
T KOG3566|consen 119 SGENVYGILRAPR--GDGTESIVLVVPYGRSS---GS--NSASVALLLSLADYFSRWVY-WSKDIIFVFTDG---PALGL 187 (617)
T ss_pred CCceEEEEEecCC--CCCcceEEEEEecccCC---Cc--chhHHHHHHHHHHHhcCCee-ecccEEEEEeCC---ccccH
Confidence 4789999998753 34567888888888653 33 47899999999999987532 468999999987 45677
Q ss_pred hHHhhcCCc-----------------cCCceEEEEeccCCC
Q 002412 241 HSFVTQHPW-----------------STTIRVAIDLEAMGI 264 (926)
Q Consensus 241 ~~f~~~h~~-----------------~~~v~a~iNLD~~G~ 264 (926)
++|.+++-. +....+.+++|.-+.
T Consensus 188 ~AwLeaYhd~~s~~~~~~ep~~i~~ragal~aal~l~~se~ 228 (617)
T KOG3566|consen 188 DAWLEAYHDILSLTGISVEPDEIQARAGALAAALVLEVSEK 228 (617)
T ss_pred HHHHHHhhccccccccccccccccccccceeeEEEEEeccc
Confidence 778765421 123467888887743
No 90
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=61.28 E-value=2.8e+02 Score=33.01 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhh
Q 002412 581 RPLKLATLLLGLAVPVLVSAG--NFIRLANVIVAIV 614 (926)
Q Consensus 581 ~~~~~~~~~~~~~~P~l~~~~--~~~~~~~~~~p~~ 614 (926)
++-.|...-+ +..|+++... .++-.+.+.+|+|
T Consensus 316 ~y~~w~~~r~-~~~p~~~~~~~~vi~pi~~~~~p~~ 350 (477)
T PRK12821 316 TYAFWLLIRL-LFAPAIFLLDIIVIYPILLLLTPIM 350 (477)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333333 7888886543 3333445556665
No 91
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=44.78 E-value=2.1e+02 Score=27.37 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=34.9
Q ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccee
Q 002412 420 TASLVMGGYPAAVSLALTCLSAILMLVFSVSFAVVIAFILPQISSSPVPYV 470 (926)
Q Consensus 420 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~ 470 (926)
+..+.+.+.....++.+...+.+.....+...+.++|.++.+- +..|+++
T Consensus 31 ~~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~-~~~M~~~ 80 (105)
T PF10190_consen 31 FFTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAA-GFRMSTW 80 (105)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCcccHH
Confidence 3444444444456666666666677888888899999999865 6788875
No 92
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=35.66 E-value=2.8e+02 Score=26.25 Aligned_cols=13 Identities=8% Similarity=-0.169 Sum_probs=7.3
Q ss_pred HHhhcCCCCCCCh
Q 002412 571 EATLTPVRFPRPL 583 (926)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (926)
.....+.|+.+..
T Consensus 64 al~vRRlhD~G~s 76 (120)
T PF05656_consen 64 ALTVRRLHDIGRS 76 (120)
T ss_pred HHHhhhhhcCCCC
Confidence 3445566776544
No 93
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=35.48 E-value=1.3e+03 Score=31.47 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhccCC
Q 002412 444 MLVFSVSFAVVIAFILPQIS 463 (926)
Q Consensus 444 ~~~~~~~~~~~va~~~~~~~ 463 (926)
++-+++..-++||+++|...
T Consensus 2261 sFn~av~iN~lVAffYPf~~ 2280 (2706)
T KOG3533|consen 2261 SFNLAVIINALVAFFYPFPE 2280 (2706)
T ss_pred hhhHHHHHHHHHHhccCCCC
Confidence 55677788899999999653
No 94
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=33.87 E-value=1e+03 Score=29.59 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002412 474 WLAVGLFAAPAFLGALTGQHLGYIILK 500 (926)
Q Consensus 474 ~l~igly~~p~~~g~~~~~~~~~~~~~ 500 (926)
.++.|+|+...++-..+|.+.+|..+.
T Consensus 148 ml~~giy~~~~l~~~~ip~~~gff~l~ 174 (952)
T TIGR02921 148 MLLFGIYAAALLAFFAIPAAAGFFELL 174 (952)
T ss_pred HHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence 367788888777777777777766553
No 95
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.53 E-value=48 Score=27.20 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=21.9
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 002412 652 VHLSGAKRPIAIASCVLFVLSLILVLSGTVPPFSE 686 (926)
Q Consensus 652 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~pf~~ 686 (926)
..++++.|.-+.++.++.+++++.+..+...||++
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~~ 43 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPYDP 43 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45666666666566565555555566677778854
No 96
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=31.42 E-value=5.8e+02 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002412 586 ATLLLGLAVPVLVSAGNFIRLANVIVAIVVR 616 (926)
Q Consensus 586 ~~~~~~~~~P~l~~~~~~~~~~~~~~p~~gR 616 (926)
..+.-.++.|+++...+....-.++.|.++|
T Consensus 188 ~~l~~~ll~P~~ig~ai~~~vslliFP~sss 218 (459)
T PF10337_consen 188 YTLGKTLLKPFLIGIAIALVVSLLIFPESSS 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeecCCCch
Confidence 4455566788888777777666667777766
No 97
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=27.69 E-value=1.1e+02 Score=35.14 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=43.4
Q ss_pred CCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002412 306 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (926)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La~~ 366 (926)
...||...|.+ .|+|.+.+.-. +...-|++. ++++.+.+....+....++..|++.
T Consensus 338 ~g~tD~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~~~~l~~~~~i~~~~i~~l~~~ 393 (394)
T PRK08651 338 LGGTDARFFGA-KGIPTVVYGPG-ELELAHAPD---EYVEVKDVEKAAKVYEEVLKRLAKG 393 (394)
T ss_pred cCcccHHHHhh-CCCcEEEECCC-ChHhcCCCC---ceeEHHHHHHHHHHHHHHHHHhhcC
Confidence 46799999987 89999755321 223567765 7888999999999999999999874
No 98
>PRK08126 hypothetical protein; Provisional
Probab=26.53 E-value=1.2e+03 Score=27.92 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=33.3
Q ss_pred EEEEeeecccccCCCCC--CCchhHHHHHHHHHHHHHHccCCCCccEEEEEeCCcC
Q 002412 181 AILVSSHIDTVFAAEGA--GDCSSCVAVMLELARAMSQWAHGFKNAVIFLFNTGEE 234 (926)
Q Consensus 181 ~VLl~AH~DSv~~spGA--~Dd~sgva~~LE~ar~L~~~~~~p~~~I~Flf~~~EE 234 (926)
.|.|.+|.|+.|...|. ....-+.+=.-.+.+.|.+.|.++ ..|.....+..+
T Consensus 355 ~I~V~GHTD~~p~~s~~~~~N~~LS~~RA~aV~~~L~~~Gv~~-~ri~~~G~G~~~ 409 (432)
T PRK08126 355 KVTVTGHTDNQPIRSAQFASNLVLSEKRAAQVAQMLQSAGVPA-SRLEAVGKGDAQ 409 (432)
T ss_pred eEEEEEecCCCCccCCccchHHHHHHHHHHHHHHHHHHcCCCH-HHeEEEEecCcC
Confidence 69999999999754442 233445555666777777766543 346555555444
No 99
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=26.44 E-value=22 Score=39.29 Aligned_cols=13 Identities=8% Similarity=0.018 Sum_probs=0.0
Q ss_pred CCCceEEEEEEEe
Q 002412 847 KNAVSKFDLDLYW 859 (926)
Q Consensus 847 ~~~P~~F~l~l~~ 859 (926)
+..|-+-.=+.+.
T Consensus 322 dggPp~Lt~~ve~ 334 (381)
T PF05297_consen 322 DGGPPKLTEEVEN 334 (381)
T ss_dssp -------------
T ss_pred CCCCCcccccccc
Confidence 4555554444444
No 100
>PRK07522 acetylornithine deacetylase; Provisional
Probab=26.28 E-value=1.6e+02 Score=33.57 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHccCCCCcchhhhhcccCCCCCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHH
Q 002412 276 HPWAVENFAAAAKYPSGQVTAQDLFASGAITSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGEN 355 (926)
Q Consensus 276 ~~~li~~~~~~a~~p~~~~l~~~~f~~g~ips~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~ 355 (926)
+..+++.++++...+... ..+..||...|.. .|+|++.+... +....||+. ++++.+.+....+.
T Consensus 311 ~~~~v~~~~~~~~~~~~~----------~~~~~td~~~~~~-~gip~v~~Gpg-~~~~~H~~~---E~i~i~~l~~~~~~ 375 (385)
T PRK07522 311 DAAAARLVRALTGDNDLR----------KVAYGTEAGLFQR-AGIPTVVCGPG-SIEQAHKPD---EFVELAQLAACEAF 375 (385)
T ss_pred CcHHHHHHHHHhCCCCcc----------eEeeecchHHhcc-CCCCEEEECCC-ChhhCCCCC---ccccHHHHHHHHHH
Confidence 345777776654332210 1234799999986 89999755432 223678866 77889999999999
Q ss_pred HHHHHHHHH
Q 002412 356 MLAFLLQAA 364 (926)
Q Consensus 356 ~l~lv~~La 364 (926)
+..++..+|
T Consensus 376 ~~~~~~~~~ 384 (385)
T PRK07522 376 LRRLLASLA 384 (385)
T ss_pred HHHHHHHHh
Confidence 999988876
No 101
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.27 E-value=24 Score=39.04 Aligned_cols=6 Identities=50% Similarity=1.597 Sum_probs=0.0
Q ss_pred HHHHHH
Q 002412 556 ALFWLV 561 (926)
Q Consensus 556 ~~~~~~ 561 (926)
=++|++
T Consensus 169 dL~WL~ 174 (381)
T PF05297_consen 169 DLYWLL 174 (381)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 344443
No 102
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=23.15 E-value=1.1e+02 Score=31.16 Aligned_cols=11 Identities=9% Similarity=-0.003 Sum_probs=6.0
Q ss_pred chhhhHHHHHH
Q 002412 38 VRSAKRSGLAW 48 (926)
Q Consensus 38 ~~~~~~~~~~~ 48 (926)
-.|++|++...
T Consensus 58 s~RM~rRm~~~ 68 (153)
T PF11947_consen 58 SNRMLRRMAVF 68 (153)
T ss_pred HHHHHHHHHHH
Confidence 45666665533
No 103
>PRK11007 PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Probab=22.96 E-value=1.4e+03 Score=27.61 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 002412 584 KLATLLLGLAVPVLVSAGNFIRLANVIVAIVVRFDR 619 (926)
Q Consensus 584 ~~~~~~~~~~~P~l~~~~~~~~~~~~~~p~~gR~g~ 619 (926)
|....+++.+-|+++.+++=+.+.++.+....+.|.
T Consensus 303 ~ig~~i~g~~~~~lV~~G~H~~~~pi~~~~i~~~G~ 338 (473)
T PRK11007 303 PIGAALFGFLYAPLVITGVHQTTLAIDLQMIQSMGG 338 (473)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Confidence 456677778888888888888888888777666664
No 104
>PRK08596 acetylornithine deacetylase; Validated
Probab=21.42 E-value=1.5e+02 Score=34.68 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=44.6
Q ss_pred CCCCChHHHhhcCCCeEEEEEeeCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHcC
Q 002412 306 TSATDFQVYKEVAGLSGLDFAYTDKSAVYHTKNDKLDLLKPGSLQHLGENMLAFLLQAASS 366 (926)
Q Consensus 306 ps~TD~~~F~~~~GIPgld~a~~~~~~~YHT~~Dt~d~id~~slq~~g~~~l~lv~~La~~ 366 (926)
+..||...|.+ .|+|++.+.... ....|++. |+++.+.+.+..+.+..++..+...
T Consensus 363 ~g~tD~~~~~~-~gip~v~~Gpg~-~~~~H~~~---E~v~i~~~~~~~~~~~~~l~~~~~~ 418 (421)
T PRK08596 363 TTVTDGGWFAE-FGIPAVIYGPGT-LEEAHSVN---EKVEIEQLIEYTKVITAFIYEWCHT 418 (421)
T ss_pred eeecchhhhhh-cCCCEEEECCCc-ccccCCCC---ceEEHHHHHHHHHHHHHHHHHHhCC
Confidence 46789999987 899998765432 34678865 7888999999999999999888754
No 105
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=20.25 E-value=1.6e+02 Score=27.19 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhhhcccC
Q 002412 49 TVAFAAFVYATYGVYYYQYEH 69 (926)
Q Consensus 49 l~~~ll~~~~~~~v~~~~~~~ 69 (926)
+.+.++++-.+|+++.|....
T Consensus 36 ~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 36 LMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred HHHHHHHHHHHHHhhhhcccC
Confidence 333344444456666555443
Done!