Query 002413
Match_columns 926
No_of_seqs 530 out of 2449
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 23:27:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2082 K+/Cl- cotransporter K 100.0 7E-157 2E-161 1300.4 59.3 835 77-926 61-1075(1075)
2 TIGR00930 2a30 K-Cl cotranspor 100.0 3E-144 7E-149 1327.0 80.8 759 123-926 68-953 (953)
3 KOG1288 Amino acid transporter 100.0 2E-116 5E-121 972.0 47.2 739 132-918 66-938 (945)
4 KOG2083 Na+/K+ symporter [Inor 100.0 1.1E-77 2.4E-82 664.4 26.8 541 127-715 24-634 (643)
5 COG0833 LysP Amino acid transp 100.0 1.6E-55 3.5E-60 491.6 29.2 392 118-563 41-458 (541)
6 KOG1286 Amino acid transporter 100.0 4.4E-47 9.5E-52 440.5 29.1 403 117-563 26-453 (554)
7 PRK15049 L-asparagine permease 100.0 2.1E-43 4.6E-48 414.8 38.9 393 118-563 25-434 (499)
8 COG1113 AnsP Gamma-aminobutyra 100.0 1.5E-44 3.3E-49 396.0 26.4 379 117-550 9-402 (462)
9 PRK10746 putative transport pr 100.0 5.4E-43 1.2E-47 408.1 35.6 393 117-563 6-415 (461)
10 PRK10836 lysine transporter; P 100.0 2.3E-42 5.1E-47 406.5 36.8 393 117-563 11-429 (489)
11 PRK10238 aromatic amino acid t 100.0 7.7E-42 1.7E-46 398.4 36.2 391 117-563 8-413 (456)
12 PRK10249 phenylalanine transpo 100.0 8.8E-42 1.9E-46 398.1 36.5 391 117-563 17-422 (458)
13 PRK11387 S-methylmethionine tr 100.0 1.5E-41 3.3E-46 398.0 36.5 394 118-563 11-422 (471)
14 PRK10197 gamma-aminobutyrate t 100.0 2.5E-41 5.5E-46 393.0 37.7 374 146-563 6-395 (446)
15 KOG1287 Amino acid transporter 100.0 2.6E-41 5.5E-46 377.3 33.1 379 129-552 10-397 (479)
16 TIGR00906 2A0303 cationic amin 100.0 8.3E-41 1.8E-45 396.5 36.5 376 131-538 28-411 (557)
17 PF00324 AA_permease: Amino ac 100.0 4.6E-43 1E-47 412.2 13.9 370 139-538 2-392 (478)
18 TIGR00913 2A0310 amino acid pe 100.0 4.2E-40 9.1E-45 387.2 35.5 376 147-563 17-422 (478)
19 TIGR00908 2A0305 ethanolamine 100.0 9.9E-40 2.1E-44 380.3 37.4 365 151-563 25-398 (442)
20 TIGR01773 GABAperm gamma-amino 100.0 5E-40 1.1E-44 383.7 33.6 390 117-562 8-414 (452)
21 TIGR00911 2A0308 L-type amino 100.0 3.2E-39 6.9E-44 381.5 40.7 391 118-563 39-438 (501)
22 PRK10580 proY putative proline 100.0 2.3E-39 5.1E-44 378.3 36.7 374 145-563 22-413 (457)
23 PRK11357 frlA putative fructos 100.0 2.4E-39 5.3E-44 377.2 35.5 385 130-563 7-402 (445)
24 PRK11049 D-alanine/D-serine/gl 100.0 2.5E-39 5.5E-44 378.8 35.6 373 146-562 34-425 (469)
25 PRK10655 potE putrescine trans 100.0 5.4E-39 1.2E-43 373.7 36.3 380 130-563 5-399 (438)
26 PRK10644 arginine:agmatin anti 100.0 8.4E-39 1.8E-43 372.5 37.2 379 130-563 7-399 (445)
27 TIGR00909 2A0306 amino acid tr 100.0 2.9E-38 6.2E-43 366.9 35.5 390 131-563 3-401 (429)
28 TIGR00905 2A0302 transporter, 100.0 4.5E-38 9.7E-43 368.9 37.2 388 130-563 6-407 (473)
29 PRK10435 cadB lysine/cadaverin 100.0 3.7E-38 8.1E-43 365.7 36.0 376 130-563 4-398 (435)
30 PRK11021 putative transporter; 100.0 2.6E-37 5.6E-42 356.4 38.6 356 144-563 11-376 (410)
31 TIGR03428 ureacarb_perm permea 100.0 4.3E-37 9.2E-42 360.8 38.7 399 122-552 4-421 (475)
32 TIGR03810 arg_ornith_anti argi 100.0 6.9E-37 1.5E-41 358.4 37.1 387 132-563 2-402 (468)
33 TIGR00907 2A0304 amino acid pe 100.0 1.1E-36 2.4E-41 358.5 37.3 406 123-562 4-433 (482)
34 KOG1289 Amino acid transporter 100.0 5E-35 1.1E-39 326.5 30.2 427 115-577 32-495 (550)
35 TIGR03813 put_Glu_GABA_T putat 100.0 2.8E-33 6.1E-38 328.6 37.7 365 160-563 25-414 (474)
36 COG0531 PotE Amino acid transp 100.0 8.2E-33 1.8E-37 324.6 37.1 377 130-550 11-400 (466)
37 TIGR00910 2A0307_GadC glutamat 100.0 8.7E-33 1.9E-37 325.4 35.7 358 160-563 28-417 (507)
38 PF13520 AA_permease_2: Amino 100.0 2.1E-32 4.6E-37 317.5 35.0 367 147-563 14-397 (426)
39 PRK15238 inner membrane transp 100.0 7.4E-32 1.6E-36 318.1 36.4 371 160-563 32-450 (496)
40 TIGR00837 araaP aromatic amino 99.9 8.2E-20 1.8E-24 208.9 31.6 347 145-551 8-369 (381)
41 TIGR00912 2A0309 spore germina 99.6 6.7E-13 1.4E-17 150.7 33.8 269 145-468 14-293 (359)
42 TIGR00796 livcs branched-chain 99.6 1.1E-12 2.3E-17 147.4 33.6 341 148-559 9-374 (378)
43 PHA02764 hypothetical protein; 99.5 2.7E-12 5.9E-17 134.1 23.5 239 167-491 47-285 (399)
44 PF03222 Trp_Tyr_perm: Tryptop 99.3 3.7E-09 8.1E-14 120.7 35.2 273 148-467 17-301 (394)
45 TIGR00814 stp serine transport 99.3 1E-09 2.2E-14 125.1 29.3 237 144-426 13-257 (397)
46 PRK10483 tryptophan permease; 99.1 1.1E-07 2.5E-12 107.8 33.0 233 147-426 24-256 (414)
47 PRK15132 tyrosine transporter 99.1 1.3E-07 2.8E-12 107.8 32.6 228 149-426 18-245 (403)
48 COG0814 SdaC Amino acid permea 99.1 1.1E-07 2.3E-12 109.5 31.2 225 156-424 30-256 (415)
49 PRK09664 tryptophan permease T 99.0 3.9E-07 8.5E-12 103.4 30.5 234 147-426 22-257 (415)
50 PRK13629 threonine/serine tran 98.7 1.7E-05 3.6E-10 90.4 32.3 240 148-426 33-283 (443)
51 PF03845 Spore_permease: Spore 98.6 3.7E-05 8.1E-10 85.9 31.1 267 146-469 14-290 (320)
52 KOG1303 Amino acid transporter 98.4 0.00032 6.9E-09 80.7 31.8 244 131-421 36-286 (437)
53 PTZ00206 amino acid transporte 98.4 0.00019 4.1E-09 84.4 30.4 244 144-421 69-316 (467)
54 PF01235 Na_Ala_symp: Sodium:a 98.4 7.2E-05 1.6E-09 84.9 24.4 294 122-471 18-338 (416)
55 PLN03074 auxin influx permease 98.3 0.00089 1.9E-08 78.6 31.4 221 143-417 55-287 (473)
56 COG1115 AlsT Na+/alanine sympo 98.0 0.0042 9.1E-08 70.1 27.7 302 122-471 62-382 (452)
57 PF01490 Aa_trans: Transmembra 97.9 5.2E-07 1.1E-11 104.3 -4.5 347 147-539 16-375 (409)
58 TIGR00835 agcS amino acid carr 97.8 0.012 2.5E-07 67.6 28.3 272 157-471 70-365 (425)
59 KOG1304 Amino acid transporter 97.8 0.0085 1.8E-07 68.3 26.8 164 203-416 130-297 (449)
60 PF05525 Branch_AA_trans: Bran 97.7 0.016 3.5E-07 66.4 25.9 233 196-470 60-305 (427)
61 PF01566 Nramp: Natural resist 97.6 0.047 1E-06 62.1 28.2 249 168-471 15-285 (358)
62 COG1114 BrnQ Branched-chain am 97.4 0.086 1.9E-06 59.2 26.1 52 270-321 117-168 (431)
63 COG1457 CodB Purine-cytosine p 97.2 0.42 9.2E-06 55.0 29.4 119 166-314 52-171 (442)
64 PRK00701 manganese transport p 97.1 0.67 1.5E-05 54.0 30.6 58 184-241 79-137 (439)
65 PRK15433 branched-chain amino 97.1 0.23 5E-06 57.1 26.1 177 273-470 122-309 (439)
66 COG0733 Na+-dependent transpor 96.9 0.44 9.5E-06 54.4 26.2 307 133-470 8-330 (439)
67 PRK11017 codB cytosine permeas 96.9 1.3 2.7E-05 51.3 32.1 119 163-311 39-158 (404)
68 PRK11375 allantoin permease; P 96.8 1.7 3.7E-05 51.5 32.4 132 164-311 58-196 (484)
69 COG3949 Uncharacterized membra 96.7 1.1 2.3E-05 49.2 26.0 74 168-243 38-111 (349)
70 COG0591 PutP Na+/proline sympo 96.6 1.3 2.9E-05 52.5 28.3 113 129-244 36-152 (493)
71 TIGR00800 ncs1 NCS1 nucleoside 96.5 2.6 5.6E-05 49.4 31.9 74 164-241 45-119 (442)
72 TIGR02358 thia_cytX probable h 96.1 3.7 8.1E-05 47.1 34.4 124 163-311 26-150 (386)
73 COG1914 MntH Mn2+ and Fe2+ tra 94.9 9.7 0.00021 43.9 32.6 97 196-320 75-171 (416)
74 PRK09442 panF sodium/panthothe 94.4 14 0.0003 43.8 31.5 48 196-243 106-154 (483)
75 TIGR02119 panF sodium/pantothe 93.3 21 0.00046 42.1 31.3 82 384-466 258-345 (471)
76 KOG1305 Amino acid transporter 92.6 14 0.00031 42.7 21.2 58 362-419 194-252 (411)
77 PF00474 SSF: Sodium:solute sy 92.3 13 0.00029 42.8 21.0 38 437-477 290-327 (406)
78 TIGR00813 sss transporter, SSS 90.8 36 0.00079 39.3 30.6 47 197-243 65-112 (407)
79 PF02705 K_trans: K+ potassium 90.4 26 0.00056 41.7 20.3 158 367-530 206-369 (534)
80 KOG2082 K+/Cl- cotransporter K 89.8 0.006 1.3E-07 71.6 -9.6 60 864-925 943-1002(1075)
81 PRK15419 proline:sodium sympor 89.3 55 0.0012 39.0 32.3 32 439-473 325-356 (502)
82 PRK09395 actP acetate permease 89.1 60 0.0013 39.2 32.8 41 202-242 136-177 (551)
83 COG4147 DhlC Predicted symport 88.6 54 0.0012 38.1 28.8 47 364-414 236-288 (529)
84 TIGR02121 Na_Pro_sym sodium/pr 87.8 67 0.0014 38.1 31.9 31 440-473 319-349 (487)
85 PF00209 SNF: Sodium:neurotran 87.5 47 0.001 39.8 20.8 111 363-474 250-377 (523)
86 PRK12488 acetate permease; Pro 84.6 1E+02 0.0022 37.2 33.7 42 201-242 133-175 (549)
87 TIGR03648 Na_symport_lg probab 84.2 1.1E+02 0.0023 37.1 33.5 46 198-243 95-141 (552)
88 TIGR02711 symport_actP cation/ 84.0 1.1E+02 0.0023 37.0 33.4 25 287-311 195-219 (549)
89 PF02133 Transp_cyt_pur: Perme 83.8 94 0.002 36.2 21.2 77 164-244 40-117 (440)
90 PRK09928 choline transport pro 83.3 1.2E+02 0.0027 37.2 24.7 95 438-536 405-502 (679)
91 PLN00149 potassium transporter 82.3 64 0.0014 40.0 18.2 155 368-525 274-434 (779)
92 TIGR00794 kup potassium uptake 80.8 40 0.00087 41.3 15.8 151 367-526 243-402 (688)
93 PRK10745 trkD potassium transp 80.6 34 0.00075 41.2 14.9 150 368-526 218-376 (622)
94 COG3158 Kup K+ transporter [In 79.3 39 0.00085 39.9 14.3 25 274-298 149-173 (627)
95 PLN00148 potassium transporter 78.2 53 0.0011 40.7 15.7 110 368-483 273-383 (785)
96 COG1953 FUI1 Cytosine/uracil/t 77.5 1.6E+02 0.0034 34.8 32.5 42 274-315 171-213 (497)
97 KOG4303 Vesicular inhibitory a 77.2 7.8 0.00017 42.6 7.5 130 155-309 137-275 (524)
98 PLN00151 potassium transporter 77.2 39 0.00085 41.9 14.2 24 274-297 275-298 (852)
99 PLN00150 potassium ion transpo 73.6 53 0.0011 40.7 14.1 151 368-524 290-446 (779)
100 PRK10484 putative transporter; 69.3 2.5E+02 0.0055 33.6 31.7 29 438-466 326-354 (523)
101 COG4145 PanF Na+/panthothenate 59.4 3.1E+02 0.0067 31.1 19.4 38 206-243 115-152 (473)
102 TIGR00796 livcs branched-chain 58.5 2.2E+02 0.0048 32.6 14.7 91 202-317 259-350 (378)
103 cd01987 USP_OKCHK USP domain i 57.2 1.2E+02 0.0025 28.0 10.5 84 593-683 12-95 (124)
104 PF02028 BCCT: BCCT family tra 55.7 4.2E+02 0.0091 31.5 27.1 91 438-536 388-482 (485)
105 PF05525 Branch_AA_trans: Bran 52.2 1.6E+02 0.0036 34.2 12.4 91 203-318 266-357 (427)
106 PRK15433 branched-chain amino 45.8 2.6E+02 0.0056 32.7 12.7 91 202-318 269-360 (439)
107 KOG4812 Golgi-associated prote 34.1 4.3E+02 0.0094 28.0 10.7 70 168-239 174-245 (262)
108 COG3949 Uncharacterized membra 28.3 6.2E+02 0.014 28.4 11.4 37 431-467 71-107 (349)
109 TIGR00930 2a30 K-Cl cotranspor 27.5 1.5E+03 0.032 29.5 21.3 44 570-613 664-707 (953)
110 PF02554 CstA: Carbon starvati 23.7 9.9E+02 0.021 27.3 12.1 74 164-238 81-154 (376)
111 PRK10580 proY putative proline 23.0 1.9E+02 0.0042 33.8 7.1 25 117-141 5-29 (457)
112 cd00293 USP_Like Usp: Universa 22.8 5.5E+02 0.012 22.9 10.4 86 592-683 11-103 (130)
113 TIGR01197 nramp NRAMP (natural 22.7 1.2E+03 0.026 26.8 30.7 35 435-469 289-323 (390)
114 KOG2884 26S proteasome regulat 21.2 2E+02 0.0044 29.9 5.6 54 742-797 89-143 (259)
115 PRK09950 putative transporter; 20.4 1.5E+03 0.033 27.0 27.2 95 438-536 398-496 (506)
No 1
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-157 Score=1300.38 Aligned_cols=835 Identities=43% Similarity=0.758 Sum_probs=712.5
Q ss_pred cccccccccCccccccccccccCCCCCcCCCCCCCCCCCCCCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhh
Q 002413 77 ERDSKLELFGFDSLVNILGLRSMTGEQIVAPSSPREGRDGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRF 156 (926)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~ 156 (926)
++...+.+...|...+...+.+....+......+. ++++....-|+++..+.++|+++|||+||++||+|+++|+|+
T Consensus 61 ~kn~~l~~~~~dt~p~issl~s~la~ytn~t~g~~---e~e~~~~~~g~~~~~a~~mGt~mGVyLPclQnIlGVilFiRL 137 (1075)
T KOG2082|consen 61 DKNSALFEEEMDTRPMISSLLSKLANYTNLTPGPK---EHEEAEEHEGRRPAKAARMGTLMGVYLPCLQNILGVILFIRL 137 (1075)
T ss_pred CchhHHHHhhhccCcchHHHHHHHHhhccCCCCCC---chhhcccccCCCCCCccccceeeeeeHHHHHHHHHHHHHHHH
Confidence 34444444455555555555554444443333343 344444455677888899999999999999999999999999
Q ss_pred hhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 157 TWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAV 236 (926)
Q Consensus 157 g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~ 236 (926)
.|++|.||.+++++++++|++++++|++|++++||||.+.+||.|++|||++||+||.++|.+||++++++.|||++|.+
T Consensus 138 tWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaV 217 (1075)
T KOG2082|consen 138 TWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYILGAV 217 (1075)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhhhhHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 237 ETFLK-AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV 315 (926)
Q Consensus 237 e~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii 315 (926)
|.+.. ++|..++++..-+. .-.....++.++++++++++.++|.+.|||+..+++.++.++++++|+.+++
T Consensus 218 Ei~L~Yi~P~aaIf~~~~a~--------~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiya 289 (1075)
T KOG2082|consen 218 EIFLTYIFPAAAIFGAEDAH--------DEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYA 289 (1075)
T ss_pred HHHHHHHccHhhhcCccccc--------cchhhhhcceehHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99887 58887776531111 1123567888999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCC------------------------------------------------------------CCCccccccc
Q 002413 316 GILLASKDDP------------------------------------------------------------APGITGLKLK 335 (926)
Q Consensus 316 g~~~~~~~~~------------------------------------------------------------~~~~~g~~~~ 335 (926)
|.+....+.+ -.|++|+...
T Consensus 290 G~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g 369 (1075)
T KOG2082|consen 290 GGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASG 369 (1075)
T ss_pred hhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccccccccceeecCCcchhhh
Confidence 8775433210 1278899999
Q ss_pred ccccccccccccCC--------CCCCCCC------CCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHH
Q 002413 336 TFKDNWFSDYQKTN--------NAGIPDP------NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA 401 (926)
Q Consensus 336 ~~~~n~~~~~~~~~--------~~g~~~~------~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ 401 (926)
+|.+||+|.|...+ ..+.+.+ .+...++|...++++||++|||++++|+|||+|||||+||.||+.
T Consensus 370 ~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~ 449 (1075)
T KOG2082|consen 370 VFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIA 449 (1075)
T ss_pred hhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCCCCccccchhhcCchhhhH
Confidence 99999999984322 1122221 123457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccC----hhhh---ccchhhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCC
Q 002413 402 ATLTTTALYVISVLLFGAAAT----REEL---LTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (926)
Q Consensus 402 ai~~~~v~Yil~~~~~~~~v~----~~~l---~~~~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg 474 (926)
|++++..+|+..++++++++. +|.. ..+.++.+.++||.+|++.+|.++|+++++++++.++||+|||+|||+
T Consensus 450 AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~ 529 (1075)
T KOG2082|consen 450 AILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDD 529 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcC
Confidence 999999999999999999987 6665 445678888999999999999999999999999999999999999999
Q ss_pred CCCccccccc-cCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhH
Q 002413 475 ILPVLNYFKV-AEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWS 553 (926)
Q Consensus 475 ~lP~~~~~~~-~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~ 553 (926)
++|++..|+| .++|+|.+|++++.+||.+.+++|+++.++++.++|||+||.++|++|.+....+.|||||+|||+||.
T Consensus 530 IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~ 609 (1075)
T KOG2082|consen 530 IIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWS 609 (1075)
T ss_pred ccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhH
Confidence 9999999987 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc------------------------------------------------------cCCCCcccccceeEEE
Q 002413 554 LSLLGSVFCI------------------------------------------------------ANQVHPKNWYPIPLIF 579 (926)
Q Consensus 554 ~~~~g~i~c~------------------------------------------------------~~~~~~knw~P~~L~~ 579 (926)
++++|+.+|+ ..++|+||||||+|++
T Consensus 610 LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEykGAeKEWGDGiRGlsLtaArysLlrlEegpPH~KNWRPQlLVl 689 (1075)
T KOG2082|consen 610 LSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYKGAEKEWGDGIRGLSLSAARYSLLRLEEGPPHPKNWRPQLLVL 689 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhccchhhHHHHHHHHHHHhcccCCCCCCCCCceeeee
Confidence 9999999998 3578999999999999
Q ss_pred eCCCCCCCCCCCCchhHHHHHHHHHhcCceeEEEEEEEeCCCCCchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHH
Q 002413 580 CRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEG 659 (926)
Q Consensus 580 ~~~~~~~~~~~~~~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g 659 (926)
.+. .++..++||+|++|++|+| .|+|+.+++++++|++.+...+++++++++++.++..|+|+|+++++++++++|
T Consensus 690 l~~---~~~~~vk~p~ll~~asqlK-aGkGltIv~s~l~G~~~e~~~~a~~a~~t~~~~m~~~r~~Gf~q~vv~~~ir~g 765 (1075)
T KOG2082|consen 690 LRL---DEDIDVKHPRLLNFASQLK-AGKGLTIVGSVLQGTFLEDKGEAQRAEETIRTLMEAERVKGFAQTVVASNLREG 765 (1075)
T ss_pred ecc---cchhchhhhhHhhHHHHhh-cCCCeEEEEEeecCCchhhhHHHHHHHHHHHHHHhHHHhhhhhhhhcccchhhh
Confidence 873 3445678999999999998 789999999999999999888888999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCccEEEeeccchhcccccCCcchhHHHHHHHHHHhcccEEEEecCCCCcccccccCCceeeEEEecC
Q 002413 660 FRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRD 739 (926)
Q Consensus 660 ~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~d 739 (926)
+++++|++|||+|||||++++||+.||+++..+.+..|+++++++.+.++++++.||++.||.+.++..|+|||||++||
T Consensus 766 ~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~v~~~~a~~~al~v~K~i~~fP~~~er~~G~IDvwWIVhD 845 (1075)
T KOG2082|consen 766 ISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIETVRDTTAAHLALLVAKGIDDFPSNVERFSGHIDVWWIVHD 845 (1075)
T ss_pred hhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHHHHHhhccceeEEEecCcccCchhhhhhcCceeEEEEEec
Confidence 99999999999999999999999999999988889999999999999999999999999999999998999999999999
Q ss_pred CchHHHHHHHhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccCcEEEEEecCCcccccc---------CCCC
Q 002413 740 GGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQTE---------NGPQ 810 (926)
Q Consensus 740 GgL~lll~~lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~aev~vv~~~~~~~~~~---------~~~~ 810 (926)
||+++|+||||++|++||+||+|+|+++|.+++.++||++++++||++||+|||.||++.++|++++ ++++
T Consensus 846 GG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl~~flY~LRi~Aev~vVem~~~dis~~~~ertl~mE~rsq 925 (1075)
T KOG2082|consen 846 GGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDLQKFLYHLRIDAEVEVVEMHDSDISAYTYERTLMMEQRSQ 925 (1075)
T ss_pred CchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHHHHHHHhhcccceEEEEEecchhhhHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999873 1222
Q ss_pred ChhhHHHHHHHHHhH---hhh-------------------------hHHhhHhh-hhcCCC--CcCCCCc--cccCHHHH
Q 002413 811 QDESLDAFIAAQHRI---KNY-------------------------LAEMKAEA-QKSGTP--LMADGKP--VVVNEQQV 857 (926)
Q Consensus 811 ~~~~~~~~~~~~~~~---~~~-------------------------~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~~~ 857 (926)
..+.++.+++.+++. .+. .++.+++- ....++ .+...++ ..-.++..
T Consensus 926 ~~~~m~~~k~~~~r~~l~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t~~k~~~~~~~~~~~~~~~k~~~~~~~~~sn 1005 (1075)
T KOG2082|consen 926 MLRQMRLSKNERERAQLIHDRNAPRRPSSLHSDEARPFETAPTKVQMTWTRDKYMASTSNPAFSLSGFKDLFSMKPDQSN 1005 (1075)
T ss_pred HHHHHHhhhhhhhccccchhcCCccccccccccccccCCCCCcceechhhhhhHHHhccCCcchhccCCcccccChhhHH
Confidence 112222233322220 000 00000000 000000 1111111 11123445
Q ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEecCCCCCCC-CcccHHHHHHHhhcCCCceEEEccCCceeeeecC
Q 002413 858 EKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINH-PAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT 926 (926)
Q Consensus 858 ~~~~~~~~~lneli~~~S~~a~lv~~~LP~p~~~~-~~~~Ym~~l~~lt~~l~p~llVrG~~~~V~T~ys 926 (926)
.++|||++||||+|++||+||+||++|||.||+|. ...+||+|||+||++|||||||||.|+||||+||
T Consensus 1006 v~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~Ymeylevlte~l~Rvl~VrG~greViTi~s 1075 (1075)
T KOG2082|consen 1006 VRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDENYMEYLEVLTEGLPRVLLVRGGGREVITIYS 1075 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhhHHHHHHHHHcCCCeEEEEccCCceEEEecC
Confidence 57799999999999999999999999999999996 5689999999999999999999999999999998
No 2
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=3.4e-144 Score=1326.98 Aligned_cols=759 Identities=42% Similarity=0.738 Sum_probs=662.2
Q ss_pred CCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhh
Q 002413 123 YGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYY 202 (926)
Q Consensus 123 l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~ 202 (926)
.+.++...+++|++.||++||++||+|+++|+|+||++++||++.++++|++++++++++++|++|++|++.|++||.|+
T Consensus 68 ~~~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~ 147 (953)
T TIGR00930 68 KEKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYY 147 (953)
T ss_pred cCCCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHH
Q 002413 203 LIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTI 282 (926)
Q Consensus 203 ~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~ 282 (926)
|++|++||++||++||+|++++++++|++++|+++|+...++..+. .+.....++.+++++++++
T Consensus 148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~---------------~~~~~~~~~~~iia~i~l~ 212 (953)
T TIGR00930 148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS---------------KIMVDPINDIRIYGTVTVV 212 (953)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---------------ccccCccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999988764211 0011223445789999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchh
Q 002413 283 ILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDW 362 (926)
Q Consensus 283 l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~ 362 (926)
+++++|++|+|+++++|.+++++++++++.++++.+......+..++++++..++.+|+.|.|... ..
T Consensus 213 ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~------------~~ 280 (953)
T TIGR00930 213 VLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGP------------EG 280 (953)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCc------------cc
Confidence 999999999999999999999999999988877665544444456778887777777877655321 11
Q ss_pred HHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--c-----------
Q 002413 363 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--D----------- 429 (926)
Q Consensus 363 ~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~----------- 429 (926)
+|+++++++|++|+|+|+++++|||+|||+|+||||++.++++++++|++++++++.+++++.... +
T Consensus 281 ~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~ 360 (953)
T TIGR00930 281 GFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAAC 360 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchh
Confidence 388899999999999999999999999999999999999999999999999998888887654211 0
Q ss_pred ---------------hhhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccc--cCCCCchh
Q 002413 430 ---------------RLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV--AEGREPHI 492 (926)
Q Consensus 430 ---------------~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~--~~~g~P~~ 492 (926)
.+......+++++++.++++++++++++++++++||++|+|||||++|++++|++ +|+++|++
T Consensus 361 f~~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~ 440 (953)
T TIGR00930 361 FSECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLR 440 (953)
T ss_pred hhhhcccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHH
Confidence 1111122344678999999999999999999999999999999999997666653 67899999
Q ss_pred HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc---------
Q 002413 493 ATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI--------- 563 (926)
Q Consensus 493 Aill~~~i~~i~~lig~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~--------- 563 (926)
|++++++++++++++++++.++++++++|+++|+++|++|+++++.+.|+|||.||+++||++++|+++|+
T Consensus 441 Alllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i~w~ 520 (953)
T TIGR00930 441 AYLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLISWW 520 (953)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888999999999999999999999998
Q ss_pred ---------------------------------------------cCCCCcccccceeEEEeCCCCCCCCCCCCchhHHH
Q 002413 564 ---------------------------------------------ANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLAD 598 (926)
Q Consensus 564 ---------------------------------------------~~~~~~knw~P~~L~~~~~~~~~~~~~~~~~~L~~ 598 (926)
..++|+||||||+|++++++ ++||+|++
T Consensus 521 ~ali~~~i~~~ly~~~~~~~~~~~wg~~~~~~~~~~a~~~ll~l~~~~~h~knwrPqiLvl~~~p-------~~~~~Ll~ 593 (953)
T TIGR00930 521 AALVAMVIALFLYKYVTYKKPDVNWGSSTQALSYSLALYSLLRLEEVEDHVKNWRPQCLVLTGPP-------VCRPALLD 593 (953)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhccCCCCCccccCCeEEEEeCCC-------cCcHHHHH
Confidence 34689999999999999753 47899999
Q ss_pred HHHHHHhcCceeEEEEEEEeCCCCCchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHhhCCCCCCccEEE
Q 002413 599 FANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVV 678 (926)
Q Consensus 599 f~~~l~k~g~gl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~ 678 (926)
|++++| +|+|+++++||++||+++..++.+++++++++|++++|+|||+++++++|+++|+++|+|++|||+||||||+
T Consensus 594 f~~~l~-~~~gl~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~ 672 (953)
T TIGR00930 594 FASQFT-KGKGLMICGSVIQGPRLECVKEAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLV 672 (953)
T ss_pred HHHHhc-cCCcEEEEEEEecCchhhhHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEE
Confidence 999998 5689999999999998877777777888999999999999999999999999999999999999999999999
Q ss_pred eeccchhcccccCCcchhHHHHHHHHHHhcccEEEEecCCCCccc-----------------------------------
Q 002413 679 MRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNE----------------------------------- 723 (926)
Q Consensus 679 lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~----------------------------------- 723 (926)
||||++|++++. +.+++|+++++||+++++||+|+|+++.+|.+
T Consensus 673 lg~~~~w~~~~~-~~~~~y~~~i~~a~~~~~~v~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (953)
T TIGR00930 673 MGYKKDWRQAEP-RAWETYIGIIHDAFDAHLAVVVVRNSEGLPISVLQVQEELENDCSEDSIELNDGKISTQPDMHLEAS 751 (953)
T ss_pred ecCccchhhccc-hhHHHHHHHHHHHHHcCCcEEEEcccccCCchhhccccccccccccccccccccccccccccchhhh
Confidence 999999998764 44689999999999999999999998877744
Q ss_pred --c-ccc-CCceeeEEEecCCchHHHHHHHhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccCcEEEEEecC
Q 002413 724 --Y-QRQ-YGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMK 799 (926)
Q Consensus 724 --~-~~~-~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~aev~vv~~~ 799 (926)
+ +++ +|||||||++|||||||||||||++|+.||+||||||++++++++.+++|++|++||++|||+||+++|++
T Consensus 752 ~~~~~~~~~~~IDvwW~~~dggL~lll~~ll~~~~~W~~~kiRvf~~~~~~~~~~~~~~~~~~lL~~~RI~a~~~~v~~- 830 (953)
T TIGR00930 752 TQFQKKQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRIFVGAQKDDRSEQEKKDMATLLYKFRIDAEVIVVLM- 830 (953)
T ss_pred hhhhccCCCceEEEEEecCCCcHHHHHHHHHhcCccccCceEEEEEEecCCchHHHHHHHHHHHHHHhCCCCEEEEEec-
Confidence 2 233 48999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccccccCCCCChhhHHHHHHHHHhHhhhhHHhhHhhhhcCCCCcCCCCccccCHHH---HHHHHHHHHHHHHHHHhcCC
Q 002413 800 SWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQ---VEKFLYTTLKLNSTILRHSR 876 (926)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lneli~~~S~ 876 (926)
|+ +.+|++++++.|+++.++++...++.+..+ .++.+..++|+.++|++ .++.++|++||||+|+|||+
T Consensus 831 --di---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlneli~~~S~ 902 (953)
T TIGR00930 831 --DI---NAKPQTESMEAFEEMIRPFRLHKTEKDREA---KDPKMTWTKPWKITDAELQSNVRKSYRQVRLNELLLEYSR 902 (953)
T ss_pred --cC---CCCcchhHHHHHHHHHhhhhhccccccccc---ccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33 244888999999887655544332221111 23345556778887754 44557999999999999999
Q ss_pred CccEEEEecCCCCCC-CCcccHHHHHHHhhcCCCceEEEccCCceeeeecC
Q 002413 877 MAAVVLVSLPPPPIN-HPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT 926 (926)
Q Consensus 877 ~a~lv~~~LP~p~~~-~~~~~Ym~~l~~lt~~l~p~llVrG~~~~V~T~ys 926 (926)
+|+||++|||+||++ +++.+||+|||+||++|||||||||||+|||||||
T Consensus 903 ~a~lv~~~lp~p~~~~~~~~~Ym~~l~~lt~~l~p~llvrGn~~~vlt~~s 953 (953)
T TIGR00930 903 DAALVVLSLPVPRKGSISDELYMAWLEVLSEDLPPVLLVRGNHRNVLTFYS 953 (953)
T ss_pred CCcEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEecCCceeeeecC
Confidence 999999999999998 88899999999999999999999999999999998
No 3
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-116 Score=972.01 Aligned_cols=739 Identities=29% Similarity=0.497 Sum_probs=614.4
Q ss_pred cccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCc
Q 002413 132 KLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPE 211 (926)
Q Consensus 132 ~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~ 211 (926)
|+||+.|||+|+.+||+.+.+|+|+||++|+||...+++.+++++.+.++|.+|+++++|||..++||+||++||++|||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhh
Q 002413 212 VGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGG 291 (926)
Q Consensus 212 ~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~G 291 (926)
+|+++|.+|++++++.++|++.|++|.+.+.|+..+ .|....+.+ ....|+..+++++++.++++++++|
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a---------~g~sg~~~l-P~g~ww~fly~t~vl~l~~~vc~lG 215 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEA---------QGASGSQFL-PDGYWWRFLYTTLVLALCLIVCLLG 215 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccc---------cCCcccccC-CCCcchhhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999887432 111111222 2346677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCC--------------CCCcccccccccccccccccccCCCCCCCCC
Q 002413 292 VKIINRVAPTFLIPVLLSIFCIFVGILLASK-DDP--------------APGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (926)
Q Consensus 292 vk~~~~~~~~~~~~~ll~i~~iiig~~~~~~-~~~--------------~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~ 356 (926)
...++|..++.+++..+++..+.++++...+ ..+ ..+|+|++++++.+|+.++|+.+...
T Consensus 216 salfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~----- 290 (945)
T KOG1288|consen 216 SALFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTG----- 290 (945)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccC-----
Confidence 9999999999999999998888776544332 211 24689999999999999999876522
Q ss_pred CCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhhhhcc
Q 002413 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATI 436 (926)
Q Consensus 357 ~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~ 436 (926)
....+|...|+++|++.+|++++|+||||+|+|+|+|||||+.++..++++|+++++++++.+|+..+.++..+....
T Consensus 291 --~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~i 368 (945)
T KOG1288|consen 291 --GGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHI 368 (945)
T ss_pred --CCceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeec
Confidence 235679999999999999999999999999999999999999999999999999999999999999988885544444
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccc--cCCCCchhHHHHHHHHHhhhhhcccchhhh
Q 002413 437 AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV--AEGREPHIATFFTAFICIGCVIIGNLDLIT 514 (926)
Q Consensus 437 ~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~--~~~g~P~~Aill~~~i~~i~~lig~~~~l~ 514 (926)
+. +++++.+|++.+++++.++.+++++|+|.|+|||+++|.+..+.| .+.|.|+.|+++++++..++++.|++|.|+
T Consensus 369 sl-~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA 447 (945)
T KOG1288|consen 369 SL-HPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIA 447 (945)
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHH
Confidence 32 358999999999999999999999999999999999999877775 568999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc-------------------------------
Q 002413 515 PTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI------------------------------- 563 (926)
Q Consensus 515 ~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~------------------------------- 563 (926)
.+++++||++|+.+|++|+.++....||+||+|||++|.++++|+++|+
T Consensus 448 ~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvVd~~~A~~~~l~~~iLv~~lh~~~pp 527 (945)
T KOG1288|consen 448 SMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVVDRINASISFLLMGILVVVLHYFSPP 527 (945)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhheecchhhhHHHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999999999999999998
Q ss_pred -----------------------cCCCCcccccceeEEEeCCCCCCCCCCCCchhHHHHHHHHHhcCceeEEEEEEEeCC
Q 002413 564 -----------------------ANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD 620 (926)
Q Consensus 564 -----------------------~~~~~~knw~P~~L~~~~~~~~~~~~~~~~~~L~~f~~~l~k~g~gl~~~~~v~~~~ 620 (926)
.+++|+|+||||+|++++++ +....|++|||+|||+|+ .+++||..||
T Consensus 528 ~swG~VSQaLiyHQVRKYLL~ld~rkdhVKfWRPQILLlV~nP-------rss~~Lirf~N~LKKggL--YilGHV~~gd 598 (945)
T KOG1288|consen 528 KSWGDVSQALIYHQVRKYLLRLDVRKDHVKFWRPQILLLVSNP-------RSSCNLIRFCNDLKKGGL--YILGHVIVGD 598 (945)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhhhhcccccceEEEEecCC-------cccchHHHHHHhhcccce--EEEEEEEecc
Confidence 46799999999999987643 234469999999998765 5688999887
Q ss_pred CCC-chHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHhhCCCCCCccEEEeeccchhcc-----cc-----
Q 002413 621 YHE-CAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRR-----EN----- 689 (926)
Q Consensus 621 ~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~-----~~----- 689 (926)
... ..++.+++++.|..++++.++|||+|++.+||+++|+|||+..+|||+|||||+++||.+.-.. ++
T Consensus 599 ~~~~~~d~l~~q~~~W~s~vd~~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~~~pq~~~q~~~~~s~ 678 (945)
T KOG1288|consen 599 DFSASMDELQQQQRAWLSFVDDAGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDLEPPQDRFQNGLQKSS 678 (945)
T ss_pred ccccccchhhHHHHHHHHHHHHhhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecCCCchhhhhcCccccc
Confidence 544 3455667778899999999999999999999999999999999999999999999999763100 00
Q ss_pred -------------------------cCCcchhHHHHHHHHHHhcccEEEEecCCCCcccccc----cCCceeeEEEec--
Q 002413 690 -------------------------LTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR----QYGTIDLYWIVR-- 738 (926)
Q Consensus 690 -------------------------~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~~~~----~~g~IDvwW~~~-- 738 (926)
++-.|.+||++++|++.|+||||++||++..+.+..+ ++++||||.+.-
T Consensus 679 ~s~~~r~~~se~~s~~~P~~~~g~~~~~~pq~yVqil~D~l~m~kNv~var~f~~L~~~~~~r~~~~kkyIDvwPi~l~~ 758 (945)
T KOG1288|consen 679 FSKEDRSEESESDSNPFPTRKDGNEHDLNPQDYVQILEDMLVMSKNVCVARGFDRLDKPKLSRSCGQKKYIDVWPINLIS 758 (945)
T ss_pred cccCCccccccccccCCCcccCCChhhCCHHHHHHHHHHHHhcccceeeecccccCChhhhhcccCCceeEEeeeeeccc
Confidence 0123679999999999999999999999987765433 458999999841
Q ss_pred ----CC-------chHHHHHHHhhcCCCcCC-cceEEEEeecCch-hHHHHHHHHHHHHHHcccCcEEEEEecCCccccc
Q 002413 739 ----DG-------GLMLLLSQLLLTKESFES-CKIQVFCIAEEDS-DAEVLKADVKKFLYDLRMQAEVIVISMKSWDEQT 805 (926)
Q Consensus 739 ----dG-------gL~lll~~lL~~~~~W~~-~klRvf~v~~~~~-~~~~~~~~l~~lL~~~RI~aev~vv~~~~~~~~~ 805 (926)
++ -++|||++||.+.+.||. ||||||.+++.++ ..+.++++|+++|..|||+|||.|++........
T Consensus 759 p~~~~~~~~d~t~lfllQLa~IL~m~~~Wk~~~~LRvflcv~~~~~~~~~E~q~m~~mlq~lRI~aev~vv~~~~~~~~~ 838 (945)
T KOG1288|consen 759 PVGGEPGENDETYLFLLQLAWILHMVSDWKSGRRLRVFLCVEFEEREGTAERQSMKQMLQTLRIEAEVVVVCLDAMNVDA 838 (945)
T ss_pred cCCCCCCcchhHHHHHHHHHHHHHhhHHhhccceEEEEEEecchhhhhhhhHHHHHHHHHHheecceEEEEEeeceeeee
Confidence 12 268999999999999986 6799999998876 4455566699999999999999998754322211
Q ss_pred cCCCCChhhHHHHHHHHHhHhhhhHHhhHhhhhcCCCCcCCCCccccCHHHHHHH----HHHHHHHHHHHHhcCCCccEE
Q 002413 806 ENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKF----LYTTLKLNSTILRHSRMAAVV 881 (926)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lneli~~~S~~a~lv 881 (926)
+ .+.++ -.|+..- +.+. .+.++.. . -.+.|++.. +....+.||+.+++|.++++-
T Consensus 839 ~---e~~~~-~df~~~~---r~~~--~~a~~~~--~----------s~~~~v~~~~~rs~~y~s~~~e~~~~~~~~Tals 897 (945)
T KOG1288|consen 839 Q---EKGDP-IDFDYVD---RRYT--AKAEAVA--P----------SASPEVEALFTRSLKYDSGWQEEGKRRGMNTALS 897 (945)
T ss_pred e---eccCC-ccccccc---cccC--ccccccc--C----------CCChhhhccccccccccccchhhhhhcCcccccc
Confidence 1 11111 1232110 0111 0100000 0 001122211 123468899999999999999
Q ss_pred EEecCCCCCC--CC--cccHHHHHHHhhcCCCceEEEccCC
Q 002413 882 LVSLPPPPIN--HP--AYCYMEYMDLLVENVPRLLIVRGYR 918 (926)
Q Consensus 882 ~~~LP~p~~~--~~--~~~Ym~~l~~lt~~l~p~llVrG~~ 918 (926)
+++||.||+. .. ...||+-++.||.+|||+|+|||-.
T Consensus 898 ~~~l~~Pp~~sd~d~r~~sy~~~~~~lT~~L~ptLlvhgvt 938 (945)
T KOG1288|consen 898 LLYLPFPPRMSDPDFRSASYLELLPPLTVDLGPTLLVHGVT 938 (945)
T ss_pred ccccCCCccccCcccccHHHHHhhhhhcccCCCceeecccc
Confidence 9999999974 22 4689999999999999999999974
No 4
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-77 Score=664.39 Aligned_cols=541 Identities=32% Similarity=0.576 Sum_probs=485.3
Q ss_pred CCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHH
Q 002413 127 KPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR 206 (926)
Q Consensus 127 ~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr 206 (926)
.....+|||+.|||+.|++||||+++|+|+||++|+||.+.+++++.++.+++..|++|.+.+++++..++||.|++++|
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002413 207 ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCF 286 (926)
Q Consensus 207 ~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~ 286 (926)
++||++|+++|.+|.+++++++|++++||+|.+.+++...+. +-.+-++++.++++..
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~----------------------~~i~gi~~vt~~ill~ 161 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK----------------------EMIDGIGSVTVLILLA 161 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH----------------------HHhcchhHHHHHHHHH
Confidence 999999999999999999999999999999999998865421 1223378888889999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHH
Q 002413 287 IVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNA 366 (926)
Q Consensus 287 in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~ 366 (926)
||..|++|..|+|.+++++.++++.-+++|.+.... ....++.|++.+.+.+|+.|+|.+. .+|++
T Consensus 162 i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~-~~~~g~~~~~a~~~~~n~~~~~~~~-------------~tfF~ 227 (643)
T KOG2083|consen 162 INVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPN-EFSSGFFGYRADIFVENLNPDIDPG-------------YTFFS 227 (643)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHhhhhhccChh-hhcccccccchhhcccCCCCCcCCC-------------CceEe
Confidence 999999999999999999999999988888776554 4556889999999999999988643 26889
Q ss_pred HHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccch--------------hh
Q 002413 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDR--------------LL 432 (926)
Q Consensus 367 ~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~--------------~~ 432 (926)
+|+++||++||+.+++|++|++|+|+++||+|++.++.+++.+|+......|.++.++.+.... +.
T Consensus 228 vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~q 307 (643)
T KOG2083|consen 228 VFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQ 307 (643)
T ss_pred eeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888777642210 00
Q ss_pred hhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccc--cCCCCchhHHHHHHHHHhhhhhcccc
Q 002413 433 TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV--AEGREPHIATFFTAFICIGCVIIGNL 510 (926)
Q Consensus 433 ~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~--~~~g~P~~Aill~~~i~~i~~lig~~ 510 (926)
.......+.+.+.+|++.+.++++++++.++++++|++++|...|.+.++.+ ++..+|.++.+++..++...+.++++
T Consensus 308 v~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igel 387 (643)
T KOG2083|consen 308 VMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGEL 387 (643)
T ss_pred HHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEeccc
Confidence 0111123456889999999999999999999999999999999999777765 67899999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc---------------------------
Q 002413 511 DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI--------------------------- 563 (926)
Q Consensus 511 ~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~--------------------------- 563 (926)
|.++++.+.+++.+|+++|++|+..+....+.|||+|++++.|.+++|+++|+
T Consensus 388 n~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w~aaLi~~~~~~~Ly~yv~~ 467 (643)
T KOG2083|consen 388 NIIAPIISNFFLLSYALINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISWWAALITFSVLSALYLYVGR 467 (643)
T ss_pred ceeccchhhhhhhhhhccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999998
Q ss_pred ---------------------------cCCCCcccccceeEEEeCCCCCCCCCCCCchhHHHHHHHHHhcCceeEEEEEE
Q 002413 564 ---------------------------ANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSI 616 (926)
Q Consensus 564 ---------------------------~~~~~~knw~P~~L~~~~~~~~~~~~~~~~~~L~~f~~~l~k~g~gl~~~~~v 616 (926)
..+.|+||+|||++++++++ ..+|.+.+++++++| +.++++|+++
T Consensus 468 ~~pdvnwGsStqa~sy~~al~~~~~l~sles~v~~~~pq~l~lsG~p-------~~r~~l~d~~~~~tr-~~~l~icg~v 539 (643)
T KOG2083|consen 468 RKPDVNWGSSTQASSYLNALSHSLQLNSLESHVKNIRPQVLLLSGDP-------ASRPALVDPDHSITR-NYSLSICGHV 539 (643)
T ss_pred cCCCCCcCchHHHHHHHHHHHhhccccchhhhhhhcCcceeeecCCh-------hhcccccCcchhhhh-ccceeeecce
Confidence 23568999999999999864 258889999999996 5899999999
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHhhCCCCCCccEEEeeccchhcccccCCcchh
Q 002413 617 LDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPAT 696 (926)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~ 696 (926)
..++++....+.....++..+|++++++|+||..+.++++++|++.++|.. +||||++++||+++|++.++.+. ++
T Consensus 540 ~~~p~~~~~~~~~~~~~~~~~wl~~~~v~aFy~~v~~~~~~~G~~~l~q~~---r~kpn~~~~g~k~~w~~~~~~~~-~~ 615 (643)
T KOG2083|consen 540 EPLPYSRSYKELLKIDKQINDWLRKRKVKAFYAAVANTDFREGAQILLQAG---RMKPNILVLGYKTNWEKASPEEI-SE 615 (643)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhHHHHHHHHh---cCCCcEEEEeeccchhhCChhhH-hH
Confidence 999776666666667788999999999999999999999999999999997 99999999999999999877665 78
Q ss_pred HHHHHHHHHHhcccEEEEe
Q 002413 697 FVGIINDCIVANKAVVIVK 715 (926)
Q Consensus 697 ~~~~i~~~~~~~~~v~i~r 715 (926)
|.+++||+++.+.+|++.|
T Consensus 616 y~~~~~~afd~~~~v~i~r 634 (643)
T KOG2083|consen 616 YYGLLHDAFDFQVGVIIFR 634 (643)
T ss_pred HHhhhhhhhccccceEEEE
Confidence 9999999999999999999
No 5
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=491.64 Aligned_cols=392 Identities=16% Similarity=0.207 Sum_probs=338.5
Q ss_pred CccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002413 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (926)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~ 197 (926)
+++|+|+.||.+++.+|+.+ |++||+..|..+.+|||++++++|++.+++++++++|++||++. +|.+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~I-----------GTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~-~P~s 108 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAI-----------GTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVF-YPVS 108 (541)
T ss_pred hhhhhhhHHHHHHHHhcccc-----------ccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC
Confidence 59999999999999999966 56678999999999999999999999999999999999999997 9999
Q ss_pred CchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHH
Q 002413 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (926)
Q Consensus 198 GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 277 (926)
|++..|.+|..+|.+||++||+||+.|+++.|.+.+++...+..++|.. .+..+|.
T Consensus 109 GsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~------------------------v~~~~w~ 164 (541)
T COG0833 109 GSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT------------------------VPPWIWI 164 (541)
T ss_pred CchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC------------------------CChHHHH
Confidence 9999999999999999999999999999999999999987777666431 2335889
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCC
Q 002413 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCI-FVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (926)
Q Consensus 278 ~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~i-iig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~ 356 (926)
+++++++.++|++|+|.+|+.|+++..+|+++++.+ ++|+++..++.+.+++.|+ ++|+.+ ++
T Consensus 165 ~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~------~yw~~p----------g~ 228 (541)
T COG0833 165 AIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGF------NYWHDP----------GA 228 (541)
T ss_pred HHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcce------eeecCC----------CC
Confidence 999999999999999999999999999999999954 5588877777776777774 334321 11
Q ss_pred CCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh----------
Q 002413 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL---------- 426 (926)
Q Consensus 357 ~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l---------- 426 (926)
..+.+.++++++..+.|+|.|.|.++..|+|.+||+|+||||++..++++.++|++..++++.++|+++.
T Consensus 229 F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~ 308 (541)
T COG0833 229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGV 308 (541)
T ss_pred CCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCc
Confidence 1123788999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ccchhhhhc--cc-CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHh
Q 002413 427 LTDRLLTAT--IA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICI 502 (926)
Q Consensus 427 ~~~~~~~~~--~~-~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~ 502 (926)
..+|++.+. .+ ...++++|++++++++|++|+++|++||+||+||+||.+|+ .|. .+|+|+|++|++++.++++
T Consensus 309 ~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk--~f~~~~r~GvP~~al~vt~~fg~ 386 (541)
T COG0833 309 AASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPK--IFAKVDRRGVPLVALLVTLLFGL 386 (541)
T ss_pred cCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCch--HHHhhCCCCCchHHHHHHHHHHH
Confidence 233554332 22 34689999999999999999999999999999999999995 554 4799999999999999999
Q ss_pred hhhhccc------chhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CCcccc-hhHHHHHHHHHhc
Q 002413 503 GCVIIGN------LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWR----PRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 503 i~~lig~------~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~r----p~fk~~-~~~~~~~g~i~c~ 563 (926)
+.++..+ ++|+.++++++.+++|..++++++++|++-..+-| -+||.+ .+|.+++|+++|+
T Consensus 387 lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~ 458 (541)
T COG0833 387 LAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCI 458 (541)
T ss_pred HHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHH
Confidence 8887532 79999999999999999999999999995333333 367766 5688999999987
No 6
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-47 Score=440.45 Aligned_cols=403 Identities=17% Similarity=0.169 Sum_probs=329.4
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|.++.+|.+++.+|+.+ |+++|+..|.++.++||...++.|++++++++++++|++|+++. +|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~I-----------GtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~ 93 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTI-----------GTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPV 93 (554)
T ss_pred chhhccCCcccEEEEEeccee-----------ccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-ccc
Confidence 589999999999999999876 45568888889999999999999999999999999999999998 999
Q ss_pred -cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHH
Q 002413 197 -GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQI 275 (926)
Q Consensus 197 -~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 275 (926)
+||+|.|.+|.+||.+||++||+|++.|.++.|.++.+...++..+.. .... ....+..+...
T Consensus 94 ~aGs~~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~---------------~~~~~~~~~~~ 157 (554)
T KOG1286|consen 94 SAGSFYTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLI---------------GILVDTVNPGG 157 (554)
T ss_pred ccccceeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cccc---------------cccccCCCCCc
Confidence 599999999999999999999999999999999999999888877641 1000 00001111234
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhccCCCCCCC--CcccccccccccccccccccCCCCC
Q 002413 276 YGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFC-IFVGILLASKDDPAP--GITGLKLKTFKDNWFSDYQKTNNAG 352 (926)
Q Consensus 276 ~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~-iiig~~~~~~~~~~~--~~~g~~~~~~~~n~~~~~~~~~~~g 352 (926)
+..++++++.++|+.|++.+++++++..+.|+++++. +++++++..++.+.+ ++.|+ ++|+++ |
T Consensus 158 ~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~------~y~~~~-------g 224 (554)
T KOG1286|consen 158 WIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGF------RYWHDP-------G 224 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCc------cccCCC-------C
Confidence 5667888889999999999999999999999999994 455777777766554 66764 455542 1
Q ss_pred CCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhh--hccc-
Q 002413 353 IPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREE--LLTD- 429 (926)
Q Consensus 353 ~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~--l~~~- 429 (926)
...|.| +.+++++++..+|+|+|+|.++..+||+|||+|+||+|++.++++++++|+++.+++++++|+++ +.++
T Consensus 225 ~F~p~g--f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~ 302 (554)
T KOG1286|consen 225 AFFPFG--FKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA 302 (554)
T ss_pred CcCCCC--cceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC
Confidence 011222 66789999999999999999999999999999999999999999999999999999999999988 5443
Q ss_pred ----hhhhhccc---CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHh
Q 002413 430 ----RLLTATIA---WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICI 502 (926)
Q Consensus 430 ----~~~~~~~~---~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~ 502 (926)
++..+... ...++++++++++++++++|++++++||++++||+||++|+++... +|+|+|++|++++.+++.
T Consensus 303 ~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v-~~~g~P~~a~~v~~~~~~ 381 (554)
T KOG1286|consen 303 ALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARV-DRRGVPLVAVLVSGLFGA 381 (554)
T ss_pred ccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhc-CCCCCchhHHHHHHHHHH
Confidence 34322211 2346799999999999999999999999999999999999644333 455999999999999999
Q ss_pred hhhhcccc------hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CCcccc-hhHHHHHHHHHhc
Q 002413 503 GCVIIGNL------DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWR----PRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 503 i~~lig~~------~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~r----p~fk~~-~~~~~~~g~i~c~ 563 (926)
++.+..+. +|++++++++.+++|.+++++++++|+..+.+-+ -+||.+ .++.++++.+.|+
T Consensus 382 l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~ 453 (554)
T KOG1286|consen 382 LAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNI 453 (554)
T ss_pred HHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHH
Confidence 98887665 9999999999999999999999999985433222 234443 4677777777766
No 7
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=2.1e-43 Score=414.84 Aligned_cols=393 Identities=16% Similarity=0.177 Sum_probs=297.7
Q ss_pred CccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002413 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (926)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~ 197 (926)
+++|+++.+|...+.+|.+ +|+++|+..|.++..+||.. +++|++++++.+++++|++||+++ +|.+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~-----------IGsGiF~~~g~~~~~aGp~~-il~~li~~i~~~~v~~slaELas~-~P~a 91 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGA-----------IGTGLFLGAGARLQMAGPAL-ALVYLICGLFSFFILRALGELVLH-RPSS 91 (499)
T ss_pred hhhccCCHhHhHHHhhhcc-----------ccchHHHhhHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 4677777777666665554 47778999999999999964 679999999999999999999998 9999
Q ss_pred CchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHH
Q 002413 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (926)
Q Consensus 198 GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 277 (926)
||.|.|++|.+||.+||.+||.++++|....+....+.+.+.. .++..+ ..+..+++
T Consensus 92 Gg~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~-~~~~~~----------------------~~~~~~~~ 148 (499)
T PRK15049 92 GSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMH-YWGAFG----------------------GVPQWVFA 148 (499)
T ss_pred CCHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCC----------------------CCcHHHHH
Confidence 9999999999999999999999999998766655555555543 222110 11223567
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCCC-CCcccccccccccccccccccCCCCCCCC
Q 002413 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF-VGILLASKDDPA-PGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (926)
Q Consensus 278 ~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~ii-ig~~~~~~~~~~-~~~~g~~~~~~~~n~~~~~~~~~~~g~~~ 355 (926)
.+++++++++|++|+|+++++|+++.++|++.++.++ ++++....+.+. ....++ .++.++ +...
T Consensus 149 ~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f------~~~~~~-------~~~~ 215 (499)
T PRK15049 149 LAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGF------HLITDN-------GGFF 215 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc------ccccCC-------CCcc
Confidence 7788889999999999999999999999988887554 454332221111 111111 111100 0011
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhhh
Q 002413 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (926)
Q Consensus 356 ~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~~~~ 433 (926)
|.| +.+++..+...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+++..++|.+++.. +++..
T Consensus 216 p~g--~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~ 293 (499)
T PRK15049 216 PHG--LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVT 293 (499)
T ss_pred ccc--HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHH
Confidence 223 34455566678889999999999999999999999999999999999999999999999999887643 34332
Q ss_pred --hccc-CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc--
Q 002413 434 --ATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII-- 507 (926)
Q Consensus 434 --~~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li-- 507 (926)
...+ ...+.+++++++++.+++.++.+++++|++|+|||||.+|+ ++. .+|+++|++|++++.+++++.+++
T Consensus 294 ~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~--~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~ 371 (499)
T PRK15049 294 FFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPS--FMAKMSRQHVPYAGILATLVVYVVGVFLNY 371 (499)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCH--HHHHhCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1222 33567899999999999999999999999999999999995 444 358899999999998887654322
Q ss_pred ----ccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCcccc-hhHHHHHHHHHhc
Q 002413 508 ----GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA--PSWRPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 508 ----g~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~--p~~rp~fk~~-~~~~~~~g~i~c~ 563 (926)
..++++.++.+++.+++|.+++++++++|++.+ +..+++||.+ .++..+++++.|+
T Consensus 372 ~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~ 434 (499)
T PRK15049 372 LVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLL 434 (499)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHH
Confidence 228899999999999999999999999986422 2234578887 4566777766665
No 8
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=395.99 Aligned_cols=379 Identities=18% Similarity=0.214 Sum_probs=320.3
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|.++.||.+.+.+|..+ |+++|++.|..+..|||. .++.|+++++++++++-+++||... .|.
T Consensus 9 ~~l~rgL~~RHIqlIAiGGaI-----------GtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~ 75 (462)
T COG1113 9 QGLKRGLKNRHIQLIAIGGAI-----------GTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPV 75 (462)
T ss_pred hhhhhhhHHHHHHHHHHhhhh-----------hhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 468999999999999888744 788899999999999996 5669999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
+|++-.|+++.+||..||.+||.||+.|++.+..++++.+.|+..++|+.+ ..++
T Consensus 76 ~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP-------------------------~Wv~ 130 (462)
T COG1113 76 SGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP-------------------------QWVF 130 (462)
T ss_pred CCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------------------------HHHH
Confidence 999999999999999999999999999999999999999999999988632 2378
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCCC-CcccccccccccccccccccCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCI-FVGILLASKDDPAP-GITGLKLKTFKDNWFSDYQKTNNAGIP 354 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~i-iig~~~~~~~~~~~-~~~g~~~~~~~~n~~~~~~~~~~~g~~ 354 (926)
++++++++..+|+.++|.++++|+++..+|+++++.+ ++|++....+.+.+ +.+|+ +|++.+ |.-
T Consensus 131 al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~------snl~~h-------GGf 197 (462)
T COG1113 131 ALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGF------SNLWDH-------GGF 197 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc------cccccC-------CCc
Confidence 8889999999999999999999999999999999954 45765544322222 23443 454443 112
Q ss_pred CCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhc--cchhh
Q 002413 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRLL 432 (926)
Q Consensus 355 ~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~--~~~~~ 432 (926)
.|+| +.+++..+.+.+|+|.|+|.+...++|.|||+|++|||+-..++++.++|+...+++..+.|++++. .+|++
T Consensus 198 fP~G--~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV 275 (462)
T COG1113 198 FPNG--FLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV 275 (462)
T ss_pred CCCc--hHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence 3444 6788999999999999999999999999999999999999999999999999999999999999764 34665
Q ss_pred hh--ccc-CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc-
Q 002413 433 TA--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII- 507 (926)
Q Consensus 433 ~~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li- 507 (926)
.. ..+ ...+.++|+.++.+.+|+.|+.+|+.+|+||+||+||..|+ .+. .+|+|+|++|++++.+...+.+++
T Consensus 276 ~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk--~~~klsk~gVP~~ai~~s~~~~~~~V~Ln 353 (462)
T COG1113 276 TVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK--AFAKLSKRGVPVNAILLSAVVLLLGVVLN 353 (462)
T ss_pred HHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccH--hHhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence 43 233 23467899999999999999999999999999999999995 454 489999999999998888766554
Q ss_pred -----ccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCcccc
Q 002413 508 -----GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW-RPRWKFH 550 (926)
Q Consensus 508 -----g~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~-rp~fk~~ 550 (926)
..|+.+.++++..++..|+++.++++++|+.++.+- +++||.|
T Consensus 354 y~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~ 402 (462)
T COG1113 354 YILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMP 402 (462)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccccc
Confidence 238999999999999999999999999998322222 5678876
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=5.4e-43 Score=408.11 Aligned_cols=393 Identities=13% Similarity=0.115 Sum_probs=305.9
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|+++.+|...+.+|.. +|+++|+..|.++..+|| ..++.|+++++++++++++++||++. +|.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~-----------IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~ 72 (461)
T PRK10746 6 PELQRGLEARHIELIALGGT-----------IGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPV 72 (461)
T ss_pred hHHhccCcHHHHHHHHHHhh-----------hhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 56778888888877666654 488889999999999999 57899999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
+||.|.|++|.+||.+||.+||++|++|....+.++.+++.++..++|.. +...+
T Consensus 73 sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-------------------------~~~~~ 127 (461)
T PRK10746 73 TGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-------------------------AQWIP 127 (461)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------------------------chHHH
Confidence 99999999999999999999999999998888888888888876655532 12356
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-Hhhhcc-CCCCCCCCcccccccccccccccccccCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF-VGILLA-SKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIP 354 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~ii-ig~~~~-~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~ 354 (926)
.++++++++++|++|+|.++++|+++..+|++.++.++ +++... ....+.....++ +||.++- | .
T Consensus 128 ~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~------~~~~~~~------g-~ 194 (461)
T PRK10746 128 ALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGF------SNLTEHG------G-F 194 (461)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcc------ccccCCC------C-c
Confidence 66777888899999999999999999999998887444 344321 111111111121 3333210 0 0
Q ss_pred CCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhh
Q 002413 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLL 432 (926)
Q Consensus 355 ~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~~~ 432 (926)
.+.| +.++..++...+++|.|+|.++.++||+|||+|++|||++.+++++.++|++..+++..++|++++.. ++++
T Consensus 195 ~~~g--~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v 272 (461)
T PRK10746 195 FAGG--WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFV 272 (461)
T ss_pred Cccc--HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHH
Confidence 1122 45788888899999999999999999999999999999999999999999999999999999988753 2443
Q ss_pred hh--cccC-chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhh----
Q 002413 433 TA--TIAW-PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCV---- 505 (926)
Q Consensus 433 ~~--~~~~-~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~---- 505 (926)
.. ..+. ..+.++++.++++.++++|++++++||++++|||||.+|++.. +.+|+|+|++|++++.++.++..
T Consensus 273 ~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~-~~~~~g~P~~al~~~~~~~~l~~~~~~ 351 (461)
T PRK10746 273 LTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMA-KVSRHGVPVAGVAVSILILLVGSCLNY 351 (461)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHH-HhCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 22 2232 3457889999999999999999999999999999999996422 23688999999998865543322
Q ss_pred hcc----cchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCcccc-hhHHHHHHHHHhc
Q 002413 506 IIG----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW-RPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 506 lig----~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~-rp~fk~~-~~~~~~~g~i~c~ 563 (926)
... .++++.++.++..++.|.+++++++++|++.+.++ +++||.+ .++.++++.+.|+
T Consensus 352 ~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 415 (461)
T PRK10746 352 IIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLI 415 (461)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHH
Confidence 111 27899999999999999999999999997543332 4578765 3456666666665
No 10
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2.3e-42 Score=406.51 Aligned_cols=393 Identities=15% Similarity=0.175 Sum_probs=296.9
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|+++.++.....+|. ++|+++|+..|.++..+||...++.|++++++++++++|++||+++ +|.
T Consensus 11 ~~l~r~L~~~~~~~l~vG~-----------~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P~ 78 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGG-----------SIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MPV 78 (489)
T ss_pred ccccccCcHHHHHHHHHhh-----------hhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 4566666666655444444 5588889999999999999878999999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
+||.|.|+++.+||.+||.+||.+++.++...+....+...++..++|.. +...+
T Consensus 79 sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~-------------------------~~~~~ 133 (489)
T PRK10836 79 SGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT-------------------------PGWIW 133 (489)
T ss_pred CCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-------------------------chHHH
Confidence 99999999999999999999999999887776665544433333323211 11244
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCCcccccccccccccccccccCCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF-VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~ii-ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~ 355 (926)
+.+++++++++|++|+|.++++|+++.++|++.++.++ ++++............++ +||.+.. .+.
T Consensus 134 ~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~ 200 (489)
T PRK10836 134 SALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGW------SNWTIGD-------APF 200 (489)
T ss_pred HHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcc------ccCCCCC-------CCC
Confidence 66677778899999999999999999999998877544 344332211000000111 2332110 011
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhc---c----
Q 002413 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL---T---- 428 (926)
Q Consensus 356 ~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~---~---- 428 (926)
+.| +.++.......+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+.+...+|.++.. +
T Consensus 201 ~~g--~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~ 278 (489)
T PRK10836 201 AGG--FAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKD 278 (489)
T ss_pred ccc--HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhcccccc
Confidence 112 3345555566678999999999999999999999999999999999999999999888888865431 1
Q ss_pred ---chhhhh--ccc-CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHH
Q 002413 429 ---DRLLTA--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFIC 501 (926)
Q Consensus 429 ---~~~~~~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~ 501 (926)
+++... ..+ .....+++++++++.++++|+.++++||++|+|||||.+|+ ++. .+|+|+|++|++++.+++
T Consensus 279 ~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~--~~~kv~~~~~P~~All~~~~~~ 356 (489)
T PRK10836 279 ISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR--IFAKLSRGGVPRNALYATTVIA 356 (489)
T ss_pred ccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH--HHHhhCCCCCcHHHHHHHHHHH
Confidence 222211 111 23467889999999999999999999999999999999995 443 357899999999999998
Q ss_pred hhhhhcc------cchhhhhHHHHHHHHHHHHHHHHHHHHhhc---CCCCC-CCCcccch-hHHHHHHHHHhc
Q 002413 502 IGCVIIG------NLDLITPTITMFFLLCYSGVNLSCFLLDLL---DAPSW-RPRWKFHH-WSLSLLGSVFCI 563 (926)
Q Consensus 502 ~i~~lig------~~~~l~~i~s~~~ll~y~~i~la~~~~~~~---~~p~~-rp~fk~~~-~~~~~~g~i~c~ 563 (926)
+++.+.. .++++.++.++..++.|.+++++++++|++ +.|+. |++||.|. ++.++++.+.|+
T Consensus 357 ~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~ 429 (489)
T PRK10836 357 GLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCL 429 (489)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHH
Confidence 7766542 257889999999999999999999999874 35666 57999884 467888888886
No 11
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=7.7e-42 Score=398.42 Aligned_cols=391 Identities=13% Similarity=0.157 Sum_probs=302.0
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|+++.+|...+.+|.++ |+++|+..|.++..+|| ..++.|++++++.+++++|++|+++. +|.
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~I-----------GsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~ 74 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAI-----------GTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-EPV 74 (456)
T ss_pred hhhhccCcHHHHHHHHhhccc-----------cchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 457778888887776666544 77789999999999999 57889999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
+||.|+|+.|.+||.+||.+||.+++++.+..+.++.++++++..++|.. +...+
T Consensus 75 aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------------------------~~~~~ 129 (456)
T PRK10238 75 AGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI-------------------------PTWVS 129 (456)
T ss_pred CCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------------------------cHHHH
Confidence 99999999999999999999999999999998888888888876655421 11245
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~ 355 (926)
.++++++++++|++|+|.++++|.++.++|++.++.+++ +++....+...... . ..|++++ . + ..
T Consensus 130 ~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~-~------~~~~~~~---~---~-~~ 195 (456)
T PRK10238 130 AAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA-T------VSNLWDQ---G---G-FL 195 (456)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-c------ccccCCC---C---C-Cc
Confidence 667778899999999999999999999999988775443 54332221110000 0 0121110 0 0 01
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhhh
Q 002413 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (926)
Q Consensus 356 ~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~~~~ 433 (926)
+.| +.++..+++..+++|.|+|..++++||+|||+|++|||++.+++++.++|++..+.+....|++++.. +|+..
T Consensus 196 ~~g--~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~ 273 (456)
T PRK10238 196 PHG--FTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVL 273 (456)
T ss_pred ccc--HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHH
Confidence 222 34566677788899999999999999999999999999999999999999998887777888887643 34332
Q ss_pred h---cccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc--
Q 002413 434 A---TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII-- 507 (926)
Q Consensus 434 ~---~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li-- 507 (926)
. ........++++.++++.+++.+++++++||++++|||||.+|+ ++. .+|+++|++|++++.++++++.++
T Consensus 274 ~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~--~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~ 351 (456)
T PRK10238 274 IFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPK--ALASVDKRGVPVNTILVSALVTALCVLINY 351 (456)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCcCCCcHHHHHHHHHHHHHHHHHHh
Confidence 1 12233567889999999999999999999999999999999995 444 357899999999999998766553
Q ss_pred ----ccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCcccc-hhHHHHHHHHHhc
Q 002413 508 ----GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-WRPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 508 ----g~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~-~rp~fk~~-~~~~~~~g~i~c~ 563 (926)
..++++.++.+.+.+++|.+++++++++||.+.+. .+++|+.+ .++..++++++|+
T Consensus 352 ~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 413 (456)
T PRK10238 352 LAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMA 413 (456)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHH
Confidence 23789999999999999999999999999753322 12344442 4556666666655
No 12
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=8.8e-42 Score=398.14 Aligned_cols=391 Identities=15% Similarity=0.146 Sum_probs=304.1
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|+++.+|...+.+|.++ |+++|+..|.++..+||. +++.|++++++.+++++|++||++. +|.
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~I-----------GsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~-~P~ 83 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAI-----------GTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVE-EPV 83 (458)
T ss_pred hhhhccCcHhHhhhhhhhccc-----------chhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 357777777777777766643 777899999999999995 7789999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
+||.|.|+.|.+||.+||.+||.+|+++....+.+..+++.++..++|.. +..++
T Consensus 84 ~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------~~~~~ 138 (458)
T PRK10249 84 SGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-------------------------PTWIW 138 (458)
T ss_pred CCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-------------------------cHHHH
Confidence 99999999999999999999999999998877777777777766544421 12356
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCCcccccccccccccccccccCCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF-VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~ii-ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~ 355 (926)
+++++++++++|++|+|.++++|.++.++|++.++.++ ++++....+++. ...++ +|..++ .+ ..
T Consensus 139 ~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~-~~~~~------~~~~~~---~~----~~ 204 (458)
T PRK10249 139 AAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGG-EKASI------DNLWRY---GG----FF 204 (458)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCh------hhccCC---CC----CC
Confidence 77788889999999999999999999999988777443 344332221110 01111 111110 00 01
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhhh
Q 002413 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (926)
Q Consensus 356 ~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~~~~ 433 (926)
+.| +.++..++...+++|.|+|..++++||+|||+|++|||++.+++++.++|++..+.+..++|.+++.. +++..
T Consensus 205 ~~g--~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~ 282 (458)
T PRK10249 205 ATG--WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVM 282 (458)
T ss_pred CCc--HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHH
Confidence 123 34677888899999999999999999999999999999999999999999998888888888776533 24332
Q ss_pred ---hcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhcc-
Q 002413 434 ---ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVIIG- 508 (926)
Q Consensus 434 ---~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~lig- 508 (926)
...+.....++++.++++.+++.++++++++|++|+|||||.+|+ ++. .+|+++|++|++++.+++.++.++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~--~~~kv~~~~~P~~All~~~~i~~l~~l~~~ 360 (458)
T PRK10249 283 IFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPK--FLTRVSRRGVPINSLMLSGAITSLVVLINY 360 (458)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCH--HHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122334567888899999999999999999999999999999995 443 3578999999999999987665432
Q ss_pred -----cchhhhhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCcccc-hhHHHHHHHHHhc
Q 002413 509 -----NLDLITPTITMFFLLCYSGVNLSCFLLDLL-DAPSWRPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 509 -----~~~~l~~i~s~~~ll~y~~i~la~~~~~~~-~~p~~rp~fk~~-~~~~~~~g~i~c~ 563 (926)
.++++.++.+..++++|++++++++++|+. ++++..++||.+ .++..+++++.|+
T Consensus 361 ~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~ 422 (458)
T PRK10249 361 LLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLG 422 (458)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHH
Confidence 378999999999999999999999999873 445555678876 3456666666655
No 13
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.5e-41 Score=398.05 Aligned_cols=394 Identities=15% Similarity=0.151 Sum_probs=293.8
Q ss_pred CccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 002413 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (926)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~ 197 (926)
+++|+++.++.....+| +++|+++|+..|.+++.+||...++.|++++++.+++++|++||+++ +|.+
T Consensus 11 ~l~r~L~~~~~~~l~ig-----------~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~a 78 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLG-----------GVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPET 78 (471)
T ss_pred hhhhcCcHHHHHHHHHH-----------hhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 35555555554443333 36688899999999999999778999999999999999999999998 9999
Q ss_pred CchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHH
Q 002413 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (926)
Q Consensus 198 GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 277 (926)
||.|.|+++.+||.+||.+||.+|+++.+..+..+.+.+.++..++|.. +...+.
T Consensus 79 GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------------------------~~~~~~ 133 (471)
T PRK11387 79 GAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV-------------------------PVWPWC 133 (471)
T ss_pred CCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC-------------------------cHHHHH
Confidence 9999999999999999999999999998887776666655544333321 112444
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCC
Q 002413 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (926)
Q Consensus 278 ~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~ 356 (926)
++++++++++|++|+|.+++++.++.++|++.++.+++ +++......+... + +.....++|.+ . + ..+
T Consensus 134 ~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~--~-~~~~~~~~~~~----~---~-~~~ 202 (471)
T PRK11387 134 LLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQD--G-SPAPGLRNLTA----E---G-WFP 202 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--C-CCCCcccccCC----C---C-CCc
Confidence 55667788999999999999999999999988774443 4332111000000 0 00000111110 0 0 011
Q ss_pred CCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhc--cchhhh-
Q 002413 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRLLT- 433 (926)
Q Consensus 357 ~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~--~~~~~~- 433 (926)
.| ..+++.++...+++|.|+|.+++++||+|||+|++|||++.++.++.++|++..+++..++|.++.. .+++..
T Consensus 203 ~g--~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~ 280 (471)
T PRK11387 203 HG--GLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLV 280 (471)
T ss_pred cc--HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHH
Confidence 22 3467777778889999999999999999999999999999999999999999999888888877653 234322
Q ss_pred --hcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhcc--
Q 002413 434 --ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVIIG-- 508 (926)
Q Consensus 434 --~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~lig-- 508 (926)
...+.....+++++++++++++.+++++++||++++|||||.+|+ ++. .+|+++|++|++++.+++++..+..
T Consensus 281 ~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~--~f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~ 358 (471)
T PRK11387 281 FEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPA--CFARLTKRGIPLTALSVSMLGGLLALFSSVV 358 (471)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCH--HHHHhCCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 222344567889999999999999999999999999999999995 443 3578999999999877665443321
Q ss_pred ----cchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCCcccc-hhHHHHHHHHHhc
Q 002413 509 ----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS----WRPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 509 ----~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~----~rp~fk~~-~~~~~~~g~i~c~ 563 (926)
.++++.++.++.+++.|++++++++++|+++.+. .+++||.+ +++.++++++.|+
T Consensus 359 ~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (471)
T PRK11387 359 APDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCL 422 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHH
Confidence 1567888999999999999999999998754322 23578876 4567787877665
No 14
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=2.5e-41 Score=393.00 Aligned_cols=374 Identities=16% Similarity=0.158 Sum_probs=294.7
Q ss_pred hhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHH
Q 002413 146 NILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (926)
Q Consensus 146 ~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~ 225 (926)
+++|+++|+..|..++++||. .++.|++++++.++.+++++||+++ +|.+||.|.|++|.+||.+||.+||+++++++
T Consensus 6 ~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~-~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~ 83 (446)
T PRK10197 6 GVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVA-TPDTGSFSTYADKAIGRWAGYTIGWLYWWFWV 83 (446)
T ss_pred chhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 467999999999999999985 7889999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002413 226 VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP 305 (926)
Q Consensus 226 ~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~ 305 (926)
+..+.+..+.+.++..+.|. .+..+++++++++++++|++|+|.++++|.++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ 138 (446)
T PRK10197 84 LVIPLEANIAAMILHSWVPG-------------------------IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALC 138 (446)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------------------CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHH
Confidence 88888876666555443321 12346788888899999999999999999999999
Q ss_pred HHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhh
Q 002413 306 VLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNR 384 (926)
Q Consensus 306 ~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~ 384 (926)
|++.++.+++ +++...+..+.....++ .+.|.+ +. ..+.| +.+++.++...+++|.|+|..+.+
T Consensus 139 ki~~li~~ii~~~~~~~g~~~~~~~~~~-----~~~~~~----~~----~~p~g--~~~~~~a~~~~~faf~G~e~~~~~ 203 (446)
T PRK10197 139 KVIAILAFIFLGAVAISGFYPYAEVSGI-----SRLWDS----GG----FMPNG--FGAVLSAMLITMFSFMGAEIVTIA 203 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCcc-----hhcCCC----CC----CCccc--HHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9998875544 44432221111111111 011110 00 01222 447888889999999999999999
Q ss_pred cccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc---chhh--hhccc-CchHHHHHHHHHHHHHHHHHH
Q 002413 385 SASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT---DRLL--TATIA-WPFPAVIHIGIILSTLGAALQ 458 (926)
Q Consensus 385 s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~---~~~~--~~~~~-~~~~~ii~~~il~s~lss~~s 458 (926)
+||+|||+|++|||++.+++++.++|++..+++...+|+++... .++. ....+ .....+++++++++.+++.|+
T Consensus 204 a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~ 283 (446)
T PRK10197 204 AAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNS 283 (446)
T ss_pred HHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888875321 1211 12223 335678889999999999999
Q ss_pred HhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhcc------cchhhhhHHHHHHHHHHHHHHHH
Q 002413 459 SLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVIIG------NLDLITPTITMFFLLCYSGVNLS 531 (926)
Q Consensus 459 ~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~lig------~~~~l~~i~s~~~ll~y~~i~la 531 (926)
++++++|++|+|||||.+|+ ++. .+|+|+|++|++++.++++++++.. .++++.++.+..+++.|.+++++
T Consensus 284 ~~~~~sR~l~a~ardg~lP~--~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a 361 (446)
T PRK10197 284 ALYTASRMLYSLSRRGDAPA--VMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVS 361 (446)
T ss_pred HHHHHHHHHHHHHcCCCcCH--HHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 443 3688999999999988876655432 47899999999999999999999
Q ss_pred HHHHhhc-CCCCCCCCcccc-hhHHHHHHHHHhc
Q 002413 532 CFLLDLL-DAPSWRPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 532 ~~~~~~~-~~p~~rp~fk~~-~~~~~~~g~i~c~ 563 (926)
++++|++ +.++.+++||.+ .++.++++++.|+
T Consensus 362 ~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~ 395 (446)
T PRK10197 362 QLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFIT 395 (446)
T ss_pred HHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHH
Confidence 9999975 455555677776 5567777766664
No 15
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=377.25 Aligned_cols=379 Identities=20% Similarity=0.276 Sum_probs=316.2
Q ss_pred CcccccceEeeeccchhhhhHhHHhhhhhhHhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHH
Q 002413 129 SDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGI-GDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRA 207 (926)
Q Consensus 129 ~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~-~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~ 207 (926)
+++++|.+.|+++- +.||+|+|+|.....++.++|+ +.+++.|+++++++++.++||+|++|. +|++||.|.|+.++
T Consensus 10 ~~kkigll~~v~li-vg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~-ipksGgd~ayi~~a 87 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLI-VGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS-IPKSGGDYAYISEA 87 (479)
T ss_pred ccceeeeecceeEE-EEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcchhhHHHH
Confidence 45789999999641 3468899999999999999864 668888999999999999999999998 99999999999999
Q ss_pred hCCchhHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 002413 208 LGPEVGVSIGLCFFL-GNAVAGAMYVLGAVET-FLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILC 285 (926)
Q Consensus 208 lGp~~Gf~~Gw~~~l-~~~~~~a~~~~g~~e~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~ 285 (926)
+||.+||..+|.-++ ....+.|..++.|++| +...+|. ++++.+..++++++++++++
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--------------------c~~p~~~~~lla~~~l~~lt 147 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--------------------CDVPRVASKLLAAALLVLLT 147 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--------------------CCCchHHHHHHHHHHHHHHH
Confidence 999999999999555 4456668999999999 4444552 24456677899999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccc-cccCCCCCCCCCCCCchhH
Q 002413 286 FIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSD-YQKTNNAGIPDPNGAVDWS 363 (926)
Q Consensus 286 ~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~-~~~~~~~g~~~~~g~~~~~ 363 (926)
.+|+.++|+..++|.++++.|+++++++++ |+.....++ .+|+.++ |.+.. ...| .
T Consensus 148 ~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~-------------~~~~~~~~f~g~~-----~~~g----~ 205 (479)
T KOG1287|consen 148 LINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGS-------------TQNFENSEFEGSD-----TDVG----N 205 (479)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecc-------------cccccccccccCc-----CchH----H
Confidence 999999999999999999999999997766 654322211 1232222 22211 0012 2
Q ss_pred HHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhhhhcc----cCc
Q 002413 364 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATI----AWP 439 (926)
Q Consensus 364 f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~----~~~ 439 (926)
+.-+|-..+|+|.||+.....+||+|||+|++|||+..++.+++++|++..+....+++.|++..++.+++.+ ...
T Consensus 206 i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~ 285 (479)
T KOG1287|consen 206 IALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGV 285 (479)
T ss_pred HHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccc
Confidence 4445666778999999999999999999999999999999999999999999999999999998776655442 234
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHH
Q 002413 440 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITM 519 (926)
Q Consensus 440 ~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~ 519 (926)
+++++-+.+.++++|+.|+.++++||.++++||+|++|.+....+.++.+|+.|+++++.++++..+++|++++.+..++
T Consensus 286 ~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf 365 (479)
T KOG1287|consen 286 FAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSF 365 (479)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56899999999999999999999999999999999999866666767779999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCcccchh
Q 002413 520 FFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHW 552 (926)
Q Consensus 520 ~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~ 552 (926)
.+.+.+.+..++.+++| .|+|+..||+|.|-.
T Consensus 366 ~~~l~~~l~~~gll~lR-~k~p~~~rPiKvpl~ 397 (479)
T KOG1287|consen 366 AYWLFRGLSMAGLLWLR-WKHPPLPRPIKVPLF 397 (479)
T ss_pred HHHHHHHHHHHHHHHHH-hhCCCCCCCEeeeee
Confidence 99999988888888887 567889999999843
No 16
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=8.3e-41 Score=396.55 Aligned_cols=376 Identities=18% Similarity=0.193 Sum_probs=289.3
Q ss_pred ccccceEeeeccchhhhhHhHHhhhhhhHh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIV-GMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~-g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
+++|.+..+.+ .+..++|+++|...|.+. ..+||. .++.|++++++.+++++||+|+++. +|.+||.|.|+++.+|
T Consensus 28 r~L~~~~l~~l-~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sGg~Y~y~~~~~G 104 (557)
T TIGR00906 28 RCLTTWDLMAL-GIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAGSAYLYSYVTVG 104 (557)
T ss_pred hcCCHHHHHHH-HhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCcceeeHHHHhC
Confidence 44455444322 122356888888888775 468987 6789999999999999999999998 9999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccchhhhccCCCCCCCCCCCCC-CchhHHHHHHHHHHHHHH
Q 002413 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAA-GMFRETITKVNGTATPEPIQSPS-LHDLQIYGIIVTIILCFI 287 (926)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~i~l~l~~~i 287 (926)
+.+||.+||.+++++.++.+..+.+++.|+..++... +.+ .....+ +..+. .....+++++++++++++
T Consensus 105 ~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~---~~~~~~------~~~~~l~~~~~~~a~~ii~l~~~l 175 (557)
T TIGR00906 105 ELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQF---RRTYFK------LNYDGLAEYPDFFAVCLILLLAVL 175 (557)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cccccc------ccCCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999888888888887665321 000 000000 00000 112245677777888999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHH
Q 002413 288 VFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNA 366 (926)
Q Consensus 288 n~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~ 366 (926)
|++|+|.+++++.++.+++++.++++++ |++.... +||...+... .+...|.| +.+++.
T Consensus 176 n~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~----------------~~~~~~~~~~--~~~f~p~g--~~g~l~ 235 (557)
T TIGR00906 176 LSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADV----------------ANWSITEEKG--AGGFMPYG--FTGVLS 235 (557)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc----------------hhcccccccc--CCCCCCcc--hHHHHH
Confidence 9999999999999999999988775444 5432211 2332111000 00011222 356888
Q ss_pred HHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-hhhh--hccc-CchHH
Q 002413 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-RLLT--ATIA-WPFPA 442 (926)
Q Consensus 367 ~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-~~~~--~~~~-~~~~~ 442 (926)
+++..+|+|.|+|++++++||+|||+|++|||++.++++++++|++..+.+...+|++++..+ ++.. ...+ .+...
T Consensus 236 g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ 315 (557)
T TIGR00906 236 GAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKY 315 (557)
T ss_pred HHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHH
Confidence 888999999999999999999999999999999999999999999999999999998876543 3221 1222 23567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHH
Q 002413 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFL 522 (926)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~l 522 (926)
++.++++++.+++.++.+++.+|++++|||||.+|++....++|+++|++|++++++++.++.++.+++.+.++.+++.+
T Consensus 316 ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~l 395 (557)
T TIGR00906 316 IVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTL 395 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999644444678999999999999999888888889999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 002413 523 LCYSGVNLSCFLLDLL 538 (926)
Q Consensus 523 l~y~~i~la~~~~~~~ 538 (926)
++|.+++++++++|++
T Consensus 396 l~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 396 LAYSLVAACVLILRYQ 411 (557)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999854
No 17
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=4.6e-43 Score=412.17 Aligned_cols=370 Identities=21% Similarity=0.323 Sum_probs=295.5
Q ss_pred eeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHH
Q 002413 139 VFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGL 218 (926)
Q Consensus 139 v~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw 218 (926)
+...++.+++|+++|++.|++++++||..+++++++++++.++++.+++||+++ .|.+||.|.|++|.+||.+|+++||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~-~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRR-FPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhh-hccccchhhhhhhccCCcCCceeeH
Confidence 345567789999999999999999999888999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHH
Q 002413 219 CFFLGNAVAGAMYVLGAVETFLKA--VPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIIN 296 (926)
Q Consensus 219 ~~~l~~~~~~a~~~~g~~e~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~ 296 (926)
.|++.+++..+.+..++..++... ++... ....+. .+++++++++++++|++|+|.++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~~~~i~~~~~~~l~~~gv~~~~ 140 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLP-------------------STWVWG-ILIAIIFILLITLLNLFGVRVSG 140 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccccccc-------------------cccccc-chhhhhhhhhhhhhhhhhhhccc
Confidence 999999999988887776555443 22210 000110 15577888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hc-cCCCCCCCC-cccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhh
Q 002413 297 RVAPTFLIPVLLSIFCIFVGI-LL-ASKDDPAPG-ITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFP 373 (926)
Q Consensus 297 ~~~~~~~~~~ll~i~~iiig~-~~-~~~~~~~~~-~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~ 373 (926)
++|.++.+++++.++.+++.. +. ...+++.+. +.+.... +.+++.+.+.+ +.+..+.+++.++...++
T Consensus 141 ~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 211 (478)
T PF00324_consen 141 KIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGS-FANNFPPGFTD--------PSGGGFSGFFAALVFAFF 211 (478)
T ss_pred hHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccc-ccccccccccc--------ccccchhHHHHhhhhhhc
Confidence 999999999999998666543 22 222222222 2222222 22333333221 112245679999999999
Q ss_pred hhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-------hhhhh---cccCchHHH
Q 002413 374 AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-------RLLTA---TIAWPFPAV 443 (926)
Q Consensus 374 a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-------~~~~~---~~~~~~~~i 443 (926)
+|.|+|+++.++||+|||+|+||||++.++++++++|++.+++....+|++.+... ++... ......+.+
T Consensus 212 af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i 291 (478)
T PF00324_consen 212 AFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWI 291 (478)
T ss_pred ccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccce
Confidence 99999999999999999999999999999999999999999999999998875221 22221 223445789
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhccc------chhhhhHH
Q 002413 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGN------LDLITPTI 517 (926)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~------~~~l~~i~ 517 (926)
++++++++++++++++++++||++++|||||.+|+.....++|+|+|++|++++.+++++..++.. ++++..+.
T Consensus 292 ~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~ 371 (478)
T PF00324_consen 292 VNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNIS 371 (478)
T ss_pred ecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhh
Confidence 999999999999999999999999999999999943334468999999999999999988876543 46788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 002413 518 TMFFLLCYSGVNLSCFLLDLL 538 (926)
Q Consensus 518 s~~~ll~y~~i~la~~~~~~~ 538 (926)
++..++.|.+++++++++|+.
T Consensus 372 ~~~~l~~~~~~~~s~~~~r~~ 392 (478)
T PF00324_consen 372 TISNLIVYILINISYIRFRKK 392 (478)
T ss_pred hhhhhhHHHhhhhhhhhhhhh
Confidence 999999999999999988875
No 18
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=4.2e-40 Score=387.24 Aligned_cols=376 Identities=18% Similarity=0.201 Sum_probs=288.4
Q ss_pred hhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCchhhhHHHHhCCchhHHHHHHHHHHHH
Q 002413 147 ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (926)
Q Consensus 147 i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~-~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~ 225 (926)
++|+++|...+.+++.+||...++.|++++++.+++++|++||+++ +|. +||.|.|+++.+||.+||.+||.++++++
T Consensus 17 ~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~-~P~~gG~~~~~~~~~~g~~~gf~~gw~~~~~~~ 95 (478)
T TIGR00913 17 TIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATF-YPVVSGSFATYASRFVDPAFGFAVGWNYWLQWL 95 (478)
T ss_pred cccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 5578889999999999999888999999999999999999999998 995 55666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002413 226 VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP 305 (926)
Q Consensus 226 ~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~ 305 (926)
+..+.+..+.+.++..+.+.. ....+..+++++++++|++|+|..+++|+++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 96 IVLPLELVTASMTIQYWTDKV-------------------------NPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred HHHHHHHHHHHHHHHHcCCCC-------------------------CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 988888888877775443311 1123344566778899999999999999999999
Q ss_pred HHHHHHHHHH-hhhccCCCCCCCCccccccccccccccc--ccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHh
Q 002413 306 VLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFS--DYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS 382 (926)
Q Consensus 306 ~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~--~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a 382 (926)
|++.++.+++ ++.....+.+.....++ .+|.+ .|.+.. .+..+.++..++...+++|.|+|.++
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~af~G~e~~~ 217 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGF------RYWHDPGAFAGGT-------IGGRFKGVCSVFVTAAFSFGGTELVA 217 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcc------cccCCCCCCCCCC-------ccchHHHHHHHHHHHHhhhccHHHHH
Confidence 9888775443 44332221111111111 12211 111110 01124567888888899999999999
Q ss_pred hhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhh--hcc---------chhhh--hccc-CchHHHHHHHH
Q 002413 383 NRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREE--LLT---------DRLLT--ATIA-WPFPAVIHIGI 448 (926)
Q Consensus 383 ~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~--l~~---------~~~~~--~~~~-~~~~~ii~~~i 448 (926)
+++||+|||+|++|||++.+++++.++|++..+.+..++|.++ +.+ +++.. ...+ .....++.+++
T Consensus 218 ~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~ 297 (478)
T TIGR00913 218 LTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVI 297 (478)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHH
Confidence 9999999999999999999999999999999888888888664 222 23221 2222 34567889999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc-c-----cchhhhhHHHHHH
Q 002413 449 ILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII-G-----NLDLITPTITMFF 521 (926)
Q Consensus 449 l~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li-g-----~~~~l~~i~s~~~ 521 (926)
+++++++.++++++++|++++|||||.+|+ ++. .+|+++|++|++++++++++.++. + .++++.++.+..+
T Consensus 298 ~~s~~~~~~~~~~~~sR~l~a~ardg~lP~--~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~ 375 (478)
T TIGR00913 298 LISVLSAANSSLYASSRTLYALAHQGLAPK--IFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSG 375 (478)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCcccH--HHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 443 358899999999999988655442 2 2788999999999
Q ss_pred HHHHHHHHHHHHHHhhcC----CCCCCCCcccc-hhHHHHHHHHHhc
Q 002413 522 LLCYSGVNLSCFLLDLLD----APSWRPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 522 ll~y~~i~la~~~~~~~~----~p~~rp~fk~~-~~~~~~~g~i~c~ 563 (926)
++.|.+++++.+++|++. +|+.+++||.+ .++.++++++.|+
T Consensus 376 ~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 422 (478)
T TIGR00913 376 FFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNI 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHH
Confidence 999999999999988641 45556788887 4467777777776
No 19
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=9.9e-40 Score=380.29 Aligned_cols=365 Identities=16% Similarity=0.156 Sum_probs=285.7
Q ss_pred HHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHH
Q 002413 151 IYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAM 230 (926)
Q Consensus 151 ~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~ 230 (926)
+.|...+..+..+||...++.+++++++.++.+++++|++++ +|.+||.|.|+++.+||.+||.+||.+++++.+..+.
T Consensus 25 g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~-~P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~ 103 (442)
T TIGR00908 25 GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM-IPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPA 103 (442)
T ss_pred ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 456666667778899888899999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 002413 231 YVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSI 310 (926)
Q Consensus 231 ~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i 310 (926)
++.++++|+...+|.. +..+++++++++++++|++|+|.+++++.++.+++++.+
T Consensus 104 ~a~~~~~~l~~~~p~~-------------------------~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l 158 (442)
T TIGR00908 104 IACFIGAYCESLFPVG-------------------------PGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIAL 158 (442)
T ss_pred HHHHHHHHHHHHhccC-------------------------chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999987776532 112566677778899999999999999999998887765
Q ss_pred HHHHHhhhccCCCCCCCCcccccccccccccccc-cccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccch
Q 002413 311 FCIFVGILLASKDDPAPGITGLKLKTFKDNWFSD-YQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLK 389 (926)
Q Consensus 311 ~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~-~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~k 389 (926)
+.+++... .. ++. .|+.+. +.+.+ + ..+.| +.+++.++...+++|.|+|.+++++||+|
T Consensus 159 ~i~~~~~~--~~---------~~~----~~~~~~~~~~~~--~-~~~~~--~~~~~~~~~~~~~af~G~e~~~~~aeE~k 218 (442)
T TIGR00908 159 GVFIGAMV--PH---------FDS----ANLFNGPQTGAS--S-FLPGA--YVGVFAAIPFAIWFFLAVEGVAMAAEETK 218 (442)
T ss_pred HHHHHHHh--cc---------CCH----HHhccCCccCCC--C-CCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54432211 11 000 111110 00000 0 01111 34677777888899999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhh---hcccC--chHHHHHHHHHHHHHHHHHHHhhh
Q 002413 390 DTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLT---ATIAW--PFPAVIHIGIILSTLGAALQSLTG 462 (926)
Q Consensus 390 nP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~---~~~~~--~~~~ii~~~il~s~lss~~s~l~~ 462 (926)
||+|++|||++.++.++.++|++..++.....+.+++.++ +... ...+. ....++.+.++++.+++.++.+++
T Consensus 219 ~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~ 298 (442)
T TIGR00908 219 NPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYG 298 (442)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887776666777766432 3321 12221 234567777788899999999999
Q ss_pred hhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 002413 463 APRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS 542 (926)
Q Consensus 463 asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~ 542 (926)
++|++++|||||.+|++....| |+++|++|++++.++++++.+.++.+.+..+.++..++.|.+.+++++++|+ ++|+
T Consensus 299 ~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~-~~p~ 376 (442)
T TIGR00908 299 YSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRI-RRPD 376 (442)
T ss_pred HHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 9999999999999996333234 8999999999999999888888888889999999999999999999998885 5788
Q ss_pred CCCCcccch-hHHHHHHHHHhc
Q 002413 543 WRPRWKFHH-WSLSLLGSVFCI 563 (926)
Q Consensus 543 ~rp~fk~~~-~~~~~~g~i~c~ 563 (926)
.+|+||.|. ++.++++++.|+
T Consensus 377 ~~rp~~~p~~~~~~~l~~~~~~ 398 (442)
T TIGR00908 377 MERPYRTPGGILTPGVALVLAC 398 (442)
T ss_pred CCCCccCCCcchHHHHHHHHHH
Confidence 889999883 556666666665
No 20
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=5e-40 Score=383.73 Aligned_cols=390 Identities=15% Similarity=0.161 Sum_probs=294.2
Q ss_pred CCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
++++|+++.+|.....+|. ++|+++|+..|..+..+||. +++.|++++++.++++++++||++. +|.
T Consensus 8 ~~~~~~L~~~~~~~i~ig~-----------~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~-~P~ 74 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAG-----------VIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVA-NPD 74 (452)
T ss_pred HhHhCcCcHHHHHHHHHhh-----------hhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 3455555555554444443 55888899999999999986 5679999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
+||.|.|+++.+||.+||.+||.+++++.+..+.+...+++++..++|.. +..++
T Consensus 75 ~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~ 129 (452)
T TIGR01773 75 TGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-------------------------PLWLF 129 (452)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------------------------cHHHH
Confidence 99999999999999999999999999999998888888888877655431 12356
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~ 355 (926)
+++++++++++|++|+|..+++++++.++|++.++.+++ +++......+.....++ .|+.++ . + ..
T Consensus 130 ~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~---~---~-~~ 196 (452)
T TIGR01773 130 SLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGF------SNLTGK---G---G-FF 196 (452)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcc------ccccCC---C---C-cC
Confidence 777888889999999999999999999999988875544 44322211111111111 111110 0 0 01
Q ss_pred CCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhc--cc-hhh
Q 002413 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TD-RLL 432 (926)
Q Consensus 356 ~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~--~~-~~~ 432 (926)
+.| +.++..++...+++|.|+|..++++||+|||+|++|||++.+++++.++|++..+......|.++.. ++ ++.
T Consensus 197 ~~g--~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~ 274 (452)
T TIGR01773 197 PNG--IGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYV 274 (452)
T ss_pred ccc--HHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHH
Confidence 222 3468888889999999999999999999999999999999999999999999888777777765432 22 332
Q ss_pred h--hcc-cCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhcc
Q 002413 433 T--ATI-AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVIIG 508 (926)
Q Consensus 433 ~--~~~-~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~lig 508 (926)
. ... +.....+++++++++++++.++.+++++|++++|||||.+|+ +++ .+|+++|++|++++.+++++..++.
T Consensus 275 ~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~--~~~~v~~~~~P~~Ail~~~~~~~~~~l~~ 352 (452)
T TIGR01773 275 AVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPR--VFMKLNKKGVPVQAVLASTFFSFLTVVVN 352 (452)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCH--HHHhhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 2 122 234567888999999999999999999999999999999995 443 3588999999999999887665431
Q ss_pred ------cchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccc---hhHHHHHHHHHh
Q 002413 509 ------NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH---HWSLSLLGSVFC 562 (926)
Q Consensus 509 ------~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~---~~~~~~~g~i~c 562 (926)
.++++.++.+..+++.|.+++++++++|++ .|+.+++|+++ .++.++++++.+
T Consensus 353 ~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~-~~~~~~~~~~~~~~~p~~~~~~~~~~ 414 (452)
T TIGR01773 353 YFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKK-LKANGEAIKIRMWLYPWLTWLVIIFI 414 (452)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCccCCCccHHHHHHHHHH
Confidence 157888888989999999999999998864 34333344443 334454444443
No 21
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=3.2e-39 Score=381.47 Aligned_cols=391 Identities=17% Similarity=0.183 Sum_probs=297.0
Q ss_pred CccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHH-HHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 002413 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGD-SLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (926)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~-~li~~~i~~~i~~~~~ls~aElat~~~p~ 196 (926)
+++|+++..+.....+|.+ +|+++|...+.++..+|+.+ .++.|++++++.++++++++|+++. +|.
T Consensus 39 ~l~r~l~~~~~~~l~vg~i-----------iGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~-~P~ 106 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTI-----------IGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTT-IPK 106 (501)
T ss_pred ccCccccHhHhhHhheece-----------EEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 3444455554444444444 45556777777888888754 4678999999999999999999998 999
Q ss_pred cCchhhhHHHHhCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hcCCCCccchhhhccCCCCCCCCCCCCCCchhH
Q 002413 197 GGGPYYLIGRALGPEVGVSIGLCFFLGN-AVAGAMYVLGAVETFLK-AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQ 274 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~-~~~~a~~~~g~~e~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 274 (926)
+||.|.|++|.+||.+||..||..++.+ ....+..+..+++|+.. .++.. ..+.+...
T Consensus 107 sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--------------------~~~~~~~~ 166 (501)
T TIGR00911 107 SGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC--------------------EVPEWAIR 166 (501)
T ss_pred CCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------CCchHHHH
Confidence 9999999999999999999999877643 44456666666777643 33321 11234445
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCC
Q 002413 275 IYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGI 353 (926)
Q Consensus 275 ~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~ 353 (926)
+++++++++++++|++|+|..++++.++.+++++.++.+++ +++....++. ... +....|...
T Consensus 167 ~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~----~~~-------~~~~~f~~~----- 230 (501)
T TIGR00911 167 LVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGV----ESL-------NPKNAFEGT----- 230 (501)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccc-------CcccccCCC-----
Confidence 77788888999999999999999999999999988775544 4432222110 000 000011110
Q ss_pred CCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhh-
Q 002413 354 PDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLL- 432 (926)
Q Consensus 354 ~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~- 432 (926)
.....++..++...+++|.|+|.+++++||+|||+|++|||++.++++++++|++..+.+...+|.+++.++...
T Consensus 231 ----~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~ 306 (501)
T TIGR00911 231 ----ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVA 306 (501)
T ss_pred ----CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHH
Confidence 011346777788889999999999999999999999999999999999999999999888888888877554211
Q ss_pred ----hhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcc
Q 002413 433 ----TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG 508 (926)
Q Consensus 433 ----~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig 508 (926)
....+ ...+++.+.++++++++.++.+++++|++++|||||.+|+.....++|+++|++|++++++++++..+.+
T Consensus 307 ~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~ 385 (501)
T TIGR00911 307 VDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSG 385 (501)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccC
Confidence 11223 3456788888999999999999999999999999999997443346788999999999999988877788
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 509 NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 509 ~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
++.++..+.++.+++.|.+++++++++|+ ++|+++|+||.|. +.++++++.|+
T Consensus 386 ~~~~l~~~~~~~~~i~y~l~~~a~i~lR~-~~p~~~rp~r~p~-~~~~l~~~~~~ 438 (501)
T TIGR00911 386 DIYSLINLISFANWLFNALAVAGLLWLRY-KRPEMNRPIKVPL-FFPVFFLLSCL 438 (501)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHheec-cCCCCCCCccCch-HHHHHHHHHHH
Confidence 88888888999999999999999999985 6788888899875 35556666665
No 22
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=2.3e-39 Score=378.30 Aligned_cols=374 Identities=16% Similarity=0.186 Sum_probs=287.5
Q ss_pred hhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHH
Q 002413 145 QNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGN 224 (926)
Q Consensus 145 ~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~ 224 (926)
.+++|+++|...|.++..+||. .++.|++++++.++++++++|++++ +|.+||.|.|++|.+||.+||.+||.+++++
T Consensus 22 g~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 99 (457)
T PRK10580 22 GSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVH-NPAASSFSRYAQENLGPLAGYITGWTYCFEI 99 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3466999999999999999985 6889999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002413 225 AVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (926)
Q Consensus 225 ~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~ 304 (926)
.+..+.+..+++.+...++|.. +...+.++++++++.+|++|+|..+++|.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 100 LIVAIADVTAFGIYMGVWFPTV-------------------------PHWIWVLSVVLIICAVNLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-------------------------ChHHHHHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence 8877777777777776555431 112445566778899999999999999999999
Q ss_pred HHHHHHHHHHH-hhhc--cCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhH
Q 002413 305 PVLLSIFCIFV-GILL--ASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAG 381 (926)
Q Consensus 305 ~~ll~i~~iii-g~~~--~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~ 381 (926)
++++.++.+++ +++. ....+. ....++ .|. +.+.. ..+.| +.+++.++...+++|.|+|..
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~-~~~~~~------~~~---~~~~~----~~~~g--~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNG-GQPTGI------HNL---WSNGG----FFSNG--WLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC-CCCCCc------ccc---CCCCC----CCCcc--hHHHHHHHHHHHHHHhCHHHH
Confidence 99988775433 4321 111100 000000 111 11100 11222 346777888889999999999
Q ss_pred hhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhhh--hccc-CchHHHHHHHHHHHHHHHH
Q 002413 382 SNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT--ATIA-WPFPAVIHIGIILSTLGAA 456 (926)
Q Consensus 382 a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~~~~--~~~~-~~~~~ii~~~il~s~lss~ 456 (926)
++++||+|||+|++|||++.+++++.++|++..+.+....|.+++.. +++.. ...+ .+...++++.++++.+++.
T Consensus 219 ~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 298 (457)
T PRK10580 219 GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAI 298 (457)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888877643 23322 1223 3345778888899999999
Q ss_pred HHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc------ccchhhhhHHHHHHHHHHHHHH
Q 002413 457 LQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII------GNLDLITPTITMFFLLCYSGVN 529 (926)
Q Consensus 457 ~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li------g~~~~l~~i~s~~~ll~y~~i~ 529 (926)
++++++.+|++++|||||.+|+ +++ .+|+|+|++|++++.+++++..++ ..++++.++.++..+++|.+++
T Consensus 299 ~~~~~~~sR~~~~~ardg~lP~--~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~ 376 (457)
T PRK10580 299 NSDVFGVGRMLHGMAEQGSAPK--IFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMIL 376 (457)
T ss_pred HHHHHHHHHHHHHHHhCCCcCH--HHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 443 357899999999997765543322 1267899999999999999999
Q ss_pred HHHHHHhhcCCC-CC-CCCcccc-hhHHHHHHHHHhc
Q 002413 530 LSCFLLDLLDAP-SW-RPRWKFH-HWSLSLLGSVFCI 563 (926)
Q Consensus 530 la~~~~~~~~~p-~~-rp~fk~~-~~~~~~~g~i~c~ 563 (926)
++++++|++.++ .+ +++||.+ .++.+++++++|+
T Consensus 377 ~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 413 (457)
T PRK10580 377 LSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLV 413 (457)
T ss_pred HHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHH
Confidence 999999975433 33 3477776 4567777777775
No 23
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=2.4e-39 Score=377.20 Aligned_cols=385 Identities=14% Similarity=0.149 Sum_probs=294.2
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHh
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGG-IGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRAL 208 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG-~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~l 208 (926)
+|++|.+..+.+. ..+++|+++|...|.+...+| +...++.|++++++.++++++++|+++. +|++||.|.|+++.+
T Consensus 7 ~r~l~~~~~~~l~-vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~-~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 7 QRKLGFWAVLAIA-VGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTA-YPENGADYVYLKNAG 84 (445)
T ss_pred cccccHHHHHHHH-HHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCceeeHHHhc
Confidence 3455555444321 122457777888887776666 4567889999999999999999999998 999999999999999
Q ss_pred CCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002413 209 GPEVGVSIGLCFF-LGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFI 287 (926)
Q Consensus 209 Gp~~Gf~~Gw~~~-l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~i 287 (926)
||.+||.+||..+ .......+.++..+++|+...+|.. .....+++++++++++++
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l 141 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----------------------PLLGKFIAAGLIIAFMLL 141 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------------hHHHHHHHHHHHHHHHHH
Confidence 9999999999744 4556667777888888876544321 112245666777788899
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHH
Q 002413 288 VFGGVKIINRVAPTFLIPVLLSIFCIF-VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNA 366 (926)
Q Consensus 288 n~~Gvk~~~~~~~~~~~~~ll~i~~ii-ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~ 366 (926)
|++|+|..+++|.++.+++++.++.++ ++++...++ ||.++..... ...| .+.++..
T Consensus 142 n~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~----------------~~~~~~~~~~-----~~~g-~~~~~~~ 199 (445)
T PRK11357 142 HLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAE----------------NFAAPTTTAI-----GATG-SFMALLA 199 (445)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----------------cccCCCcccc-----cccc-hHHHHHH
Confidence 999999999999999999998776544 455432211 1111100000 0012 1345777
Q ss_pred HHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhhh-----cccCc
Q 002413 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLTA-----TIAWP 439 (926)
Q Consensus 367 ~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~~-----~~~~~ 439 (926)
++...+++|.|+|.+++++||+|||+|++|||++.++.+++++|++..+.+....|.+++..+ ++... ..+..
T Consensus 200 ~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~ 279 (445)
T PRK11357 200 GISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGST 279 (445)
T ss_pred HHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchH
Confidence 788889999999999999999999999999999999999999999999988888898887543 22211 12333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHH
Q 002413 440 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITM 519 (926)
Q Consensus 440 ~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~ 519 (926)
...++.++++++.+++.++.+++++|++++|||||.+|+.....|+|+++|++|+++++++++++.+.++++.+..+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~ 359 (445)
T PRK11357 280 AGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTL 359 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45677778888999999999999999999999999999644334678999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCcccch-hHHHHHHHHHhc
Q 002413 520 FFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHH-WSLSLLGSVFCI 563 (926)
Q Consensus 520 ~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~-~~~~~~g~i~c~ 563 (926)
.+++.|.+..++++++|+ + ++++|+||.|. +..++++++.|+
T Consensus 360 ~~~~~~~~~~~a~i~lr~-~-~~~~~~~k~p~~~~~~~~~~~~~~ 402 (445)
T PRK11357 360 VMCFKNTLTFGSIIWCRK-R-DDYKPLWRTPAFGLMTTLAIASSL 402 (445)
T ss_pred HHHHHHHHHHHHHheeec-C-CCCCCCcccCCchHHHHHHHHHHH
Confidence 999999888888887764 3 45677899884 466777777665
No 24
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=2.5e-39 Score=378.82 Aligned_cols=373 Identities=16% Similarity=0.243 Sum_probs=286.5
Q ss_pred hhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHH
Q 002413 146 NILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (926)
Q Consensus 146 ~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~ 225 (926)
+++|+++|+..|.++..+|| ..++.|++++++.+++++|++|++++ .|..||.|.|+++.+||.+||.+||.+++++.
T Consensus 34 ~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~~~~~~~ya~~~~g~~~gf~~gW~~~~~~~ 111 (469)
T PRK11049 34 GAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLEYKSFSDFASDLLGPWAGYFTGWTYWFCWV 111 (469)
T ss_pred hHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 36799999999999999999 56889999999999999999999997 89999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002413 226 VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP 305 (926)
Q Consensus 226 ~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~ 305 (926)
+..+.++.+++.|+..++|.. ....++.+++++++++|++|+|..+++|+++.++
T Consensus 112 ~~~~a~~~a~~~~~~~~~p~~-------------------------~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~ 166 (469)
T PRK11049 112 VTGIADVVAITAYAQFWFPDL-------------------------SDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMI 166 (469)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-------------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 777777777777776555421 1124556677788999999999999999999999
Q ss_pred HHHHHHHHHH-hhhccCCCC-CCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhh
Q 002413 306 VLLSIFCIFV-GILLASKDD-PAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSN 383 (926)
Q Consensus 306 ~ll~i~~iii-g~~~~~~~~-~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~ 383 (926)
|++.++.+++ +++....+. ...+. ..++.+.+... + ..|.| +.+++.++...+++|.|+|..++
T Consensus 167 kl~~l~~~ii~g~~~~~~~~~~~~~~--------~~~~~~~~~~~---~-~~p~g--~~~~~~~~~~~~~af~G~e~~~~ 232 (469)
T PRK11049 167 KIVAIVALIVVGLVMVAMHFQSPTGV--------EASFAHLWNDG---G-MFPKG--LSGFFAGFQIAVFAFVGIELVGT 232 (469)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCC--------CCcccccCCCC---C-CCccc--HHHHHHHHHHHHHHHhcHHHHHH
Confidence 9988885544 554322110 00000 00111111000 0 11223 34578888999999999999999
Q ss_pred hcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhh--hc-ccCchHHHHHHHHHHHHHHHHHH
Q 002413 384 RSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLT--AT-IAWPFPAVIHIGIILSTLGAALQ 458 (926)
Q Consensus 384 ~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~--~~-~~~~~~~ii~~~il~s~lss~~s 458 (926)
++||+|||+|++||+++.+.+.+.++|++..+.+....|.+++..+ ++.. .. .......++++.++++.+++.++
T Consensus 233 ~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~ 312 (469)
T PRK11049 233 TAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANS 312 (469)
T ss_pred HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888877543 3322 11 22335678899999999999999
Q ss_pred HhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhh---hhc-c----cchhhhhHHHHHHHHHHHHHH
Q 002413 459 SLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGC---VII-G----NLDLITPTITMFFLLCYSGVN 529 (926)
Q Consensus 459 ~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~---~li-g----~~~~l~~i~s~~~ll~y~~i~ 529 (926)
.+++.+|++++|||||.+|+ ++. .+|+|+|++|++++++++.+. .+. . .++++..+.++.+++.|.+++
T Consensus 313 ~~~~~sR~l~a~ardg~lP~--~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~ 390 (469)
T PRK11049 313 GVFSTSRMLFGLAQEGVAPK--AFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIIL 390 (469)
T ss_pred HHHHHHHHHHHHHhCCCCCH--HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 443 357799999999988765432 122 1 368888999999999999999
Q ss_pred HHHHHHhhcCCCCC-C-CCcccc-hhHHHHHHHHHh
Q 002413 530 LSCFLLDLLDAPSW-R-PRWKFH-HWSLSLLGSVFC 562 (926)
Q Consensus 530 la~~~~~~~~~p~~-r-p~fk~~-~~~~~~~g~i~c 562 (926)
++++++|++ .|++ | ++||.| .++.++++.+.|
T Consensus 391 ~a~~~lr~~-~p~~~~~~pf~~p~~~~~~~~~~~~~ 425 (469)
T PRK11049 391 CSYLVYRKQ-RPHLHEKSIYKMPLGKLMCWVCMAFF 425 (469)
T ss_pred HHHHHHHHh-hhhcCCCCCccCcCcchHHHHHHHHH
Confidence 999998864 5665 3 478876 334555555544
No 25
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=5.4e-39 Score=373.66 Aligned_cols=380 Identities=14% Similarity=0.173 Sum_probs=293.1
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
++++|.+..+.+ ...+|+|+++|...+.+ ..+|+. +++.|++++++.++.+++++|+++. +|++||.|.|++|.+|
T Consensus 5 ~~~l~~~~~~~l-~vg~~iGsGif~~p~~~-~~~G~~-~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~GG~y~y~~~~~G 80 (438)
T PRK10655 5 SNKMGVVQLTIL-TAVNMMGSGIIMLPTKL-AQVGTI-SILSWLVTAVGSMALAYAFAKCGMF-SRKSGGMGGYAEYAFG 80 (438)
T ss_pred cCcccHHHHHHH-HHHhhhhhHHHHhHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCchHHHHHHHcC
Confidence 345666665543 23558899999887764 467874 5789999999999999999999998 9999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 002413 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (926)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~ 289 (926)
|.+||.+||.+++++.+..+..+.++..|....+|.. ...+...++.++++++++++|+
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~ln~ 139 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT---------------------LSPVQICLATIGVLWLCTVANF 139 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------cchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988776666666677776666521 1123334566777788999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCC-chhHHHHH
Q 002413 290 GGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGA-VDWSFNAL 367 (926)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~-~~~~f~~~ 367 (926)
+|+|..++++.+..+++++.++.+++ +...... +|+.+.+.+ .+. .+.++...
T Consensus 140 ~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~----------------~~~~~~~~~---------~~~~~~~~~~~~ 194 (438)
T PRK10655 140 GGARITGQISSVTVWGVIIPVVGLSIIGWFWFSP----------------SLYVAAWNP---------HHLPFFSAVGSS 194 (438)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------ccccCCcCc---------cCCchHHHHHHH
Confidence 99999999999988888776665444 3322211 122121111 010 12356677
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhh---hhcccCchHH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLL---TATIAWPFPA 442 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~---~~~~~~~~~~ 442 (926)
+...+|+|.|+|.+++++||+|||+|++|||++.++.++.++|++..+....+.|.+++.++ ++. ....+.....
T Consensus 195 ~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~ 274 (438)
T PRK10655 195 IAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGK 274 (438)
T ss_pred HHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHH
Confidence 78889999999999999999999999999999999999999999988888888888877543 322 2234444567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc-------ccchhhh
Q 002413 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII-------GNLDLIT 514 (926)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li-------g~~~~l~ 514 (926)
++.++++++.+++.++++++++|+++++||||.+|+ ++. .+|+++|++|++++++++.++.+. ..++++.
T Consensus 275 ~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~--~~~~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~ 352 (438)
T PRK10655 275 IVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPK--IFSRVTKVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLV 352 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH--HHHhhCcCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 888888999999999999999999999999999995 443 257899999999998887654432 2478999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 515 PTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 515 ~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
++.++..++.|.+++++++++|+++ |+.+++||.+ ..++++|.+.|+
T Consensus 353 ~~~~~~~~i~y~~~~~~~~~lr~~~-~~~~~~~~~~-~~~~~~~~~~~~ 399 (438)
T PRK10655 353 NLAVVTNIIPYILSMAALVIIQKVA-NVPPSKAKVA-NFIAFVGALYSF 399 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-CCCcchhHHH-HHHHHHHHHHHH
Confidence 9999999999999999999988644 5555667754 356777777776
No 26
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=8.4e-39 Score=372.53 Aligned_cols=379 Identities=17% Similarity=0.215 Sum_probs=289.9
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
++++|.+..+.+ .+.+++|+++|...+.+... |+ ..++.|++++++.++++++++||++. +|.+||.|.|+++.+|
T Consensus 7 ~~~lg~~~~~~l-~vg~~iGsGif~~~~~~a~~-g~-~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 7 AHKVGLIPVTLM-VAGNIMGSGVFLLPANLAST-GG-IAIYGWLVTIIGALGLSMVYAKMSSL-DPSPGGSYAYARRCFG 82 (445)
T ss_pred CCCcCHHHHHHH-HHhhHhhhHHHhhHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHHHcC
Confidence 456777766654 23458899999998876554 54 36789999999999999999999998 9999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 002413 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (926)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~ 289 (926)
|.+||.+||.+|+++.++.+.....+..|....+|.. ...+...+++++++++++++|+
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ln~ 141 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---------------------KDPLVLTITCVVVLWIFVLLNI 141 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------CCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887666555555556665555421 1122334566777788999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHH
Q 002413 290 GGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV 368 (926)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~ 368 (926)
+|+|..+++|+++.+++++.++.+++ ++..... +++.+.+... + . ..+..+..++
T Consensus 142 ~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~----------------~~~~~~~~~~---~---~--~~~~~~~~~~ 197 (445)
T PRK10644 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG----------------ETYMAAWNVS---G---L--GTFGAIQSTL 197 (445)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------hhccCCcccc---c---c--chHHHHHHHH
Confidence 99999999999999998877664433 4332211 1111111100 0 0 0133566677
Q ss_pred HHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhh---hcccCchHHH
Q 002413 369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLT---ATIAWPFPAV 443 (926)
Q Consensus 369 ~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~---~~~~~~~~~i 443 (926)
...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+++..++|.+++..+ ++.. ...+.....+
T Consensus 198 ~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~ 277 (445)
T PRK10644 198 NVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAI 277 (445)
T ss_pred HHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHH
Confidence 7888999999999999999999999999999999999999999999999998988876432 3322 2234445567
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhcc-------cchhhhh
Q 002413 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVIIG-------NLDLITP 515 (926)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~lig-------~~~~l~~ 515 (926)
+.++++++++++.++.++.++|++++|||||.+|+ ++. .+|+++|++|++++++++.++.+.. .++++.+
T Consensus 278 v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~--~~~~v~~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~ 355 (445)
T PRK10644 278 VSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP--IFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSS 355 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCcCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 78888899999999999999999999999999995 443 2468999999999999987655431 3889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 516 TITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 516 i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
+.++..+++|++++++++++|++ +|++++++ .++.++++++.|+
T Consensus 356 ~~~~~~li~y~~~~~~~~~l~~~-~~~~~~p~---~~~~~~~~~~~~~ 399 (445)
T PRK10644 356 VSVIFTLVPYLYTCAALLLLGHG-HFGKARPA---YLAVTLIAFVYCI 399 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCcccccc---hhHHHHHHHHHHH
Confidence 99999999999999999998864 45443332 3567888888887
No 27
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2.9e-38 Score=366.87 Aligned_cols=390 Identities=18% Similarity=0.271 Sum_probs=304.9
Q ss_pred ccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCC
Q 002413 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP 210 (926)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp 210 (926)
+++|.+..+.+ ...+++|+++|...+.+.+.+|+. .++.|++++++.++++++++|++++ +|.+||.|.|++|.+||
T Consensus 3 r~l~~~~~~~~-~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 3 RELGLFDLTML-GIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAM-LPVAGSPYTYAYEAMGE 79 (429)
T ss_pred ccccHHHHHHH-HHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcceeeHHHHhCc
Confidence 55666666543 133477899999999888888875 5678999999999999999999998 99999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCC--CCCCchhHHHHHHHHHHHHHHH
Q 002413 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQ--SPSLHDLQIYGIIVTIILCFIV 288 (926)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~i~l~l~~~in 288 (926)
.+|+..||.+++++.+..+.++.++++++...++..+.. .+.... .+......+.+++++++++++|
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 148 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD-----------LPAVLTAKPGNGGVFNLPALLIVLFLTYIL 148 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CchhhhcCCcccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999988888887766521100 000000 0001111245677888999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHH
Q 002413 289 FGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNAL 367 (926)
Q Consensus 289 ~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~ 367 (926)
+.|+|..++++.++..++++.++.+++ +...... .||.+.+ +.+ ..++..+
T Consensus 149 ~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~----------------~~~~~~~----------~~~--~~~~~~~ 200 (429)
T TIGR00909 149 YLGAKESGKVNDILVVLKVAALLLFAALGAIHFAS----------------NNYTPFM----------PMG--FGGVGAA 200 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH----------------HhcCCCC----------CCc--HHHHHHH
Confidence 999999999999999999988775443 3321110 2232211 011 2356777
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhh---hhcccCchHH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLL---TATIAWPFPA 442 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~---~~~~~~~~~~ 442 (926)
+...+++|.|+|..++++||+|||+|++||+++.+++++.++|++..+......|.+++.++ +.. ....+.....
T Consensus 201 ~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR00909 201 TALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGL 280 (429)
T ss_pred HHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHH
Confidence 88888999999999999999999999999999999999999999999888888888876543 221 1123344567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHH
Q 002413 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFL 522 (926)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~l 522 (926)
++.++++++++++.++++++.+|+++++||||.+|+.....|+|+++|++|++++.++++++.+.++++.+.++.++.++
T Consensus 281 ~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~ 360 (429)
T TIGR00909 281 ILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTL 360 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999643333568999999999999999887777889999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCcccch-hHHHHHHHHHhc
Q 002413 523 LCYSGVNLSCFLLDLLDAPSWRPRWKFHH-WSLSLLGSVFCI 563 (926)
Q Consensus 523 l~y~~i~la~~~~~~~~~p~~rp~fk~~~-~~~~~~g~i~c~ 563 (926)
+.|.+++++++++|+ ++|+.+++||.+. +..+.++.+.|+
T Consensus 361 ~~y~~~~~a~~~lr~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (429)
T TIGR00909 361 IAFAAVNVAVIILRR-RRPDIQRAFRCPLVPVLPVLVVSYCI 401 (429)
T ss_pred HHHHHHHHHHHHHHh-hcCCCCCCCCCCcchHHHHHHHHHHH
Confidence 999999999999985 6788888899873 455555555554
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=4.5e-38 Score=368.91 Aligned_cols=388 Identities=17% Similarity=0.242 Sum_probs=298.9
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCchhhhHHHHh
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGGPYYLIGRAL 208 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~-~GG~Y~~isr~l 208 (926)
++++|.+..+++ ...+++|+++|...+.+...+|+...++.|++++++.++.+++++|++++ +|. +||.|.|+++.+
T Consensus 6 ~~~l~~~~~~~l-~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~-~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 6 SKKLGLFALTAL-VIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATK-KPELDGGIYAYAREGF 83 (473)
T ss_pred CCCccHHHHHHH-HHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCChhhhHHhHc
Confidence 356777666643 23448899999999888888899888999999999999999999999998 999 999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 002413 209 GPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIV 288 (926)
Q Consensus 209 Gp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in 288 (926)
||.+||.+||.+++++.+..+.+...+.+++...+|..+ ....+...+++++++++++.+|
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-------------------~~~~~~~~~~~~~~~~~~~~ln 144 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-------------------SGNPVPSILGASVLLWVFTFLV 144 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------------CCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887777777777777776665221 0112333466777778889999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHH
Q 002413 289 FGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNAL 367 (926)
Q Consensus 289 ~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~ 367 (926)
++|+|..+++|.++.+++++.++.+++ +++.... +.+..++.++..+ .. +..+.++..+
T Consensus 145 ~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~------------~~~~~~~~~~~~p-------~~-~~~~~~~~~~ 204 (473)
T TIGR00905 145 LRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKL------------DLFTADFWGHDVP-------SL-GSVFSQVKNT 204 (473)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------------hhcccccCccCCC-------cc-cchHHHHHHH
Confidence 999999999999999999988775554 4432211 0111122221110 00 1123467777
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhh----hhcccCchH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLL----TATIAWPFP 441 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~----~~~~~~~~~ 441 (926)
+...+++|.|+|.+++++||+|| +|++||+++.++.+++++|++..+......|.+++.++ +.. ....+....
T Consensus 205 ~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~ 283 (473)
T TIGR00905 205 MLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGA 283 (473)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHH
Confidence 88899999999999999999999 99999999999999999999998888888888877543 311 122344456
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhc-----ccchhhhhH
Q 002413 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----GNLDLITPT 516 (926)
Q Consensus 442 ~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~li-----g~~~~l~~i 516 (926)
.++.++++++++++.++.+.+.+|++|+|||||.+|++... .+++++|++|++++.+++.++.++ ++++++.++
T Consensus 284 ~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~~-v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~ 362 (473)
T TIGR00905 284 VLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGR-VNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSL 362 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHh-hCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 78888899999999999999999999999999999963222 246699999999999887654432 458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCcccchhHHHHHHHHHhc
Q 002413 517 ITMFFLLCYSGVNLSCFLLDLLD-APSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 517 ~s~~~ll~y~~i~la~~~~~~~~-~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
.++.+++.|.+++++.+++|+++ .|+.+ .+ ..+++++++.+.|+
T Consensus 363 ~~~~~~i~y~~~~~a~~~lr~~~~~~~~~--~~-~~~~~~~l~~~~~~ 407 (473)
T TIGR00905 363 AVVMILVPYLLSAAYLLKLAKVGTYPKIK--NR-KALIVGVIACVYSI 407 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccc--cc-hHHHHHHHHHHHHH
Confidence 99999999999999999998643 13311 11 24577888888877
No 29
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=3.7e-38 Score=365.69 Aligned_cols=376 Identities=15% Similarity=0.184 Sum_probs=286.8
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
++++|.+..+.+ ...+|+|+++|...+.. ..+|+. .++.|+++++..++.+++++||+++ +|.+||.|.|++| +|
T Consensus 4 ~~~lg~~~~~~l-~vg~~IGsGif~lp~~~-a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 4 AKKIGLFACTGV-VAGNMMGSGIALLPANL-ASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCcCCHHHHHHH-HHhhHHHHHHHHHHHHH-HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHH-HC
Confidence 356777766543 14568899999888865 567875 7789999999999999999999998 9999999999999 89
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 002413 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (926)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~ 289 (926)
|.+||.+||.||+++.+..+...+.++.|+..++|... ......+++++++++++++|+
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---------------------~~~~~~~~~~~i~~~~~~ln~ 137 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---------------------DPIPAGIACIAIVWVFTFVNM 137 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---------------------ChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987766666666667778777665321 012223556677778899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHH
Q 002413 290 GGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV 368 (926)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~ 368 (926)
+|+|..++++.+..+++++.++.+++ +..... ...+..||.+.. + ..+.+++.++
T Consensus 138 ~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~------------~~~~~~~~~~~~----------~--~~~~~~~~a~ 193 (435)
T PRK10435 138 LGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFD------------AATYAANWNTSD----------T--TDGHAIIKSI 193 (435)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------HHhhcccccCCC----------C--chHHHHHHHH
Confidence 99999999999888777665553332 322111 111112332210 1 1245788888
Q ss_pred HHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhh---hcccCchHHH
Q 002413 369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLT---ATIAWPFPAV 443 (926)
Q Consensus 369 ~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~---~~~~~~~~~i 443 (926)
...+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++..++....+|++++..+ ++.. ...+.....+
T Consensus 194 ~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~ 273 (435)
T PRK10435 194 LLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPL 273 (435)
T ss_pred HHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887432 4332 2234445778
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhh----c--------ccc
Q 002413 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVI----I--------GNL 510 (926)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~l----i--------g~~ 510 (926)
++++++++++++.++.++..+|..++|||||.+|+ ++. .+|+|+|++|++++.+++.++.+ + ..+
T Consensus 274 i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~--~f~k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 351 (435)
T PRK10435 274 VSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPK--VYGEVDKNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLF 351 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHH
Confidence 88889999999999999999999999999999996 443 36899999999998777644321 1 137
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 511 DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 511 ~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
+++.++.+...+++|++++++++++|+ +++|+++ ..+.++++.+.|+
T Consensus 352 ~~l~~~~~~~~l~~y~~~~~~~ir~~~---~~~~~~~---~~~~~~~~~~~~~ 398 (435)
T PRK10435 352 GELTGIAVLLTMLPYFYSCVDLIRFEG---VNIRNFV---SLICSVLGCVFCF 398 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHH---HHHHHHHHHHHHH
Confidence 899999999999999999999886652 3333222 2466777777776
No 30
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=2.6e-37 Score=356.40 Aligned_cols=356 Identities=16% Similarity=0.143 Sum_probs=272.9
Q ss_pred hhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHH
Q 002413 144 LQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLG 223 (926)
Q Consensus 144 ~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~ 223 (926)
+.+|+|+++|+..|.+.+.+|| .+++.|++++++.++.+++++|+++. +|++||.|.|+++.+||.+||.+||.+++.
T Consensus 11 ~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~-~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~ 88 (410)
T PRK11021 11 STSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH-FPHAGGPAHFVGMAFGPRLGRVTGWLFLSV 88 (410)
T ss_pred HHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHhHHHHhCchhHHHHHHHHHHH
Confidence 4568999999999999999998 56889999999999999999999998 999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002413 224 NAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFL 303 (926)
Q Consensus 224 ~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~ 303 (926)
+.+..+........++...++.. .+....++.+++++++++|++|+|..++++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 89 IPVGLPAALQIAAGFGQALFGWS-----------------------SWQLLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCC-----------------------CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 76665554444556666555421 1223456667778889999999999999999877
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhh
Q 002413 304 IPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSN 383 (926)
Q Consensus 304 ~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~ 383 (926)
++++..++.++ . ....+ ..++. +... .+. .+.++...+...+++|.|+|.+++
T Consensus 146 ~~~~~i~~~~~-~---~~~~~-------------~~~~~--~~~~------~~~--~~~~~~~~~~~~~~af~G~e~~~~ 198 (410)
T PRK11021 146 LLIVALVVAIW-W---AGDIK-------------PADIP--FPAP------GSI--EWSGLFAALGVMFWCFVGIEAFAH 198 (410)
T ss_pred HHHHHHHHHHH-H---HcCCc-------------hhcCC--CCCC------CCc--cHHHHHHHHHHHHHHHhcHHHHHh
Confidence 54433222111 1 11100 01110 0000 001 234677888999999999999999
Q ss_pred hcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chh---hhhcccCchHHHHHHHHHHHHHHHHHH
Q 002413 384 RSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRL---LTATIAWPFPAVIHIGIILSTLGAALQ 458 (926)
Q Consensus 384 ~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~~---~~~~~~~~~~~ii~~~il~s~lss~~s 458 (926)
++||+|||+|++|||++.+++++.++|++..+......+.++... .+. .....+.....++.+.++++++++.++
T Consensus 199 ~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~ 278 (410)
T PRK11021 199 LASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNI 278 (410)
T ss_pred hHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887766665544321 221 122334445677888889999999999
Q ss_pred HhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhc-----ccchhhhhHHHHHHHHHHHHHHHHHH
Q 002413 459 SLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----GNLDLITPTITMFFLLCYSGVNLSCF 533 (926)
Q Consensus 459 ~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~li-----g~~~~l~~i~s~~~ll~y~~i~la~~ 533 (926)
.+++.+|++++|||||.+|++... .+|+++|++|++++.+++.++.++ .+++.+..+.+..+++.|.+++++.+
T Consensus 279 ~~~~~sR~l~a~ardg~lP~~~~k-~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~ 357 (410)
T PRK11021 279 YTQSFARLVWSQAREGRPPSYLAR-LSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAAC 357 (410)
T ss_pred HHHHHHHHHHHHHccCCccHHHHh-hccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999963322 357899999999998887655432 46889999999999999999999999
Q ss_pred HHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 534 LLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 534 ~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
++++++ .++.+++|++.|+
T Consensus 358 ~l~~~~-----------~~~~~~~~~~~~~ 376 (410)
T PRK11021 358 KLLKGR-----------YRPLAVLGCLLCL 376 (410)
T ss_pred HHhccc-----------hHHHHHHHHHHHH
Confidence 887532 1467888888887
No 31
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=4.3e-37 Score=360.82 Aligned_cols=399 Identities=17% Similarity=0.225 Sum_probs=285.0
Q ss_pred cCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchh
Q 002413 122 TYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPY 201 (926)
Q Consensus 122 ~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y 201 (926)
++|++++.+|++|.+.-+.+.-.....++++|...+..+..+|| ..++.|++++++.++++++++||++. +|.+||.|
T Consensus 4 ~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aGG~Y 81 (475)
T TIGR03428 4 RFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISGAIY 81 (475)
T ss_pred hcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCHH
Confidence 36777778888888776644222222577889999999999999 57889999999999999999999998 99999999
Q ss_pred hhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCC-CCchhHHHHHHH
Q 002413 202 YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSP-SLHDLQIYGIIV 280 (926)
Q Consensus 202 ~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~ 280 (926)
+|++|.+||.+||.+||.+++++.+..+....++..++...++..... +. ...+..+ ..++..+++.++
T Consensus 82 ~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~ 151 (475)
T TIGR03428 82 QWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQII--------GE--DPTLTSPSGAANAVLLGSVL 151 (475)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--------cc--CccccCCCchHHHHHHHHHH
Confidence 999999999999999999999998777666665544443332211000 00 0000001 123445677778
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCc
Q 002413 281 TIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAV 360 (926)
Q Consensus 281 l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~ 360 (926)
+++++++|++|+|..++++.+..+++++.++++++..+.....++. + .+..++.+ ...+ .
T Consensus 152 ~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~-----~---~f~~~~~~-----------~~~~-~ 211 (475)
T TIGR03428 152 LVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPG-----V---VFDTSVTG-----------ASPG-Y 211 (475)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----e---eeecCCCC-----------CCcc-H
Confidence 8889999999999999999999999987777555433322211100 0 00011100 0011 1
Q ss_pred hhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccCh-hh--hccc--hhh-hh
Q 002413 361 DWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATR-EE--LLTD--RLL-TA 434 (926)
Q Consensus 361 ~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~-~~--l~~~--~~~-~~ 434 (926)
...|.......+++|+|+|..++++||+|||+|++|||++.++++++++|++..+......+. ++ ...+ +.. ..
T Consensus 212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 291 (475)
T TIGR03428 212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSA 291 (475)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHH
Confidence 345666666778899999999999999999999999999999999988888776665555443 21 1111 221 12
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc--ccCCCCchhHHHHHHHHHhhhhhc--c--
Q 002413 435 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK--VAEGREPHIATFFTAFICIGCVII--G-- 508 (926)
Q Consensus 435 ~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~--~~~~g~P~~Aill~~~i~~i~~li--g-- 508 (926)
..+.....++.+.++++.+++.+++++++||++|++||||.+|+.+++. ++|+++|++|++++.+++.++.++ +
T Consensus 292 ~~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~ 371 (475)
T TIGR03428 292 VLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNS 371 (475)
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcH
Confidence 2333334566677788999999999999999999999999999754554 468899999999999998766554 3
Q ss_pred -cchhhhhHHHHHHHHHHHHHHHHHHHHhhcC-CC---CC-CCCcccchh
Q 002413 509 -NLDLITPTITMFFLLCYSGVNLSCFLLDLLD-AP---SW-RPRWKFHHW 552 (926)
Q Consensus 509 -~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~-~p---~~-rp~fk~~~~ 552 (926)
.|+.+.++.++..+++|.++.++.+..|++. +| .+ +++|+...|
T Consensus 372 ~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~ 421 (475)
T TIGR03428 372 ALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRW 421 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchh
Confidence 3789999999999999988877777666432 11 12 456777643
No 32
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=6.9e-37 Score=358.39 Aligned_cols=387 Identities=18% Similarity=0.212 Sum_probs=291.5
Q ss_pred cccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CchhhhHHHHhCC
Q 002413 132 KLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG-GGPYYLIGRALGP 210 (926)
Q Consensus 132 ~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~-GG~Y~~isr~lGp 210 (926)
++|.+..+.+ .+.+++|+++|...+.+...+||...++.|++++++.++++++++|+++. +|.+ ||.|.|+++.+||
T Consensus 2 ~lgl~~~~~l-~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 2 KLGLGALTAL-VVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCHHHHHHH-HHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCChhhhHHhHcCc
Confidence 4455444432 24558899999999999999999888999999999999999999999998 9986 5999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhh
Q 002413 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (926)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~ 290 (926)
.+||.+||.+|+++.++.+.+......+....+|... ........+++.+++++++++|++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-------------------~~~~~~~~~~~~~~~~~~~~ln~~ 140 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-------------------GGNNPPSIIGASVLLWCVHFLVLR 140 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999877766666555566555555321 001112234566677788899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHH
Q 002413 291 GVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG 369 (926)
Q Consensus 291 Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~ 369 (926)
|+|..+++|.++.++|++.++.+++ +++....+. +..++.++..+ + .+.+.....+...+.
T Consensus 141 Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~------------~~~~~~~~~~~----~--~~~~~~~~~~~~~~~ 202 (468)
T TIGR03810 141 GVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDT------------FTNDFWGNANG----G--FSLGSVMTQVKNMML 202 (468)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhh------------cCccccccccc----c--CccccHHHHHHHHHH
Confidence 9999999999999999988875544 443322110 00111110000 0 001112334666778
Q ss_pred HHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--ch-hh---hhcccCchHHH
Q 002413 370 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DR-LL---TATIAWPFPAV 443 (926)
Q Consensus 370 i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~--~~-~~---~~~~~~~~~~i 443 (926)
..+|+|.|+|.++.++||.|| +|++||++..++.+++++|++..+......|.+++.+ ++ .. ....+.+...+
T Consensus 203 ~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~ 281 (468)
T TIGR03810 203 VTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVL 281 (468)
T ss_pred HHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHH
Confidence 888999999999999999998 7999999999999999999999888888888877643 23 11 22344556789
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc-----ccchhhhhHH
Q 002413 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII-----GNLDLITPTI 517 (926)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li-----g~~~~l~~i~ 517 (926)
++++++++++++.++++++++|++++|||||.+|+ ++. .+|+|+|++|++++.+++.++.++ ..++++.++.
T Consensus 282 i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~--~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~ 359 (468)
T TIGR03810 282 INIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPK--YFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLA 359 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999999999999999999999995 443 358899999999998888655432 3488999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 518 TMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 518 s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
+..++++|.+++++.+++|+++.++..+++ +...+.++.+.|+
T Consensus 360 ~~~~li~y~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~~ 402 (468)
T TIGR03810 360 TSAILVPYLWSAAYQVKLSWRGGQERGRRK---QLLIGLVALLYAV 402 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhh---hHHHHHHHHHHHH
Confidence 999999999999999999864421211222 3566777777776
No 33
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.1e-36 Score=358.49 Aligned_cols=406 Identities=13% Similarity=0.112 Sum_probs=278.4
Q ss_pred CCCCCCCcccccceEeeeccchhhhhH--hHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCch
Q 002413 123 YGPPKPSDVKLGTLMGVFIPCLQNILG--IIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGP 200 (926)
Q Consensus 123 l~~~~~~~~~lG~~~Gv~i~~~~~i~G--v~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~ 200 (926)
+++++..+|++|.+..+.+ ..+++| .++|...+..+..+||...++.|++++++.++++++++||+++ +|.+||.
T Consensus 4 ~g~~~~l~r~l~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~Gg~ 80 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGF--AFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSGGQ 80 (482)
T ss_pred cCCcceeecccchhHHHHH--HHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCccH
Confidence 3445555566666654432 112233 5667777777888999888999999999999999999999998 9999999
Q ss_pred hhhHHHHhC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHH
Q 002413 201 YYLIGRALG----PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (926)
Q Consensus 201 Y~~isr~lG----p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 276 (926)
|+|++|.+| +..||.+||.+++++...++....+++.++...+..... .....+..|...++
T Consensus 81 y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i 146 (482)
T TIGR00907 81 YFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTP--------------GREYIPTRWHIFGI 146 (482)
T ss_pred HHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CCCccccCchhhhh
Confidence 999999986 577999999999999888887777777776654321000 00001223444556
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCC
Q 002413 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (926)
Q Consensus 277 ~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~ 356 (926)
.++++++++++|++|+|..++++.++.+++++.++++++..+....+..... .+. .+++.++.. | ..+
T Consensus 147 ~~~~~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~--~~~----~~~~~~~~~-----g-~~~ 214 (482)
T TIGR00907 147 MIGIHLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDG--KFV----FTNFNNSTG-----G-WKP 214 (482)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCh--hhh----heeeeCCCC-----C-cCC
Confidence 6777888999999999999999999888887776644332222111100000 000 012221100 0 011
Q ss_pred CCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc-Chhhhcc----chh
Q 002413 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA-TREELLT----DRL 431 (926)
Q Consensus 357 ~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v-~~~~l~~----~~~ 431 (926)
.| +++..++....++|.|+|.+++++||+|||+|++|||++.++.+..++|++..+...... +.+++.+ +++
T Consensus 215 ~g---~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~ 291 (482)
T TIGR00907 215 GG---FAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPI 291 (482)
T ss_pred Cc---hhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChH
Confidence 12 245545555668999999999999999999999999999999888776665544443333 3443322 233
Q ss_pred hh---hcccC-chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc--ccCCCCchhHHHHHHHHHhhhh
Q 002413 432 LT---ATIAW-PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK--VAEGREPHIATFFTAFICIGCV 505 (926)
Q Consensus 432 ~~---~~~~~-~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~--~~~~g~P~~Aill~~~i~~i~~ 505 (926)
.. ...+. ....++.+.++++.+++++++++++||++++|||||.+|..+++. ++|+++|++|++++.+++.++.
T Consensus 292 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~ 371 (482)
T TIGR00907 292 AQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIG 371 (482)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHH
Confidence 21 12333 345677888899999999999999999999999999999433443 4567999999999999887655
Q ss_pred hcc-----cchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccch--hHHHHHHHHHh
Q 002413 506 IIG-----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHH--WSLSLLGSVFC 562 (926)
Q Consensus 506 lig-----~~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~--~~~~~~g~i~c 562 (926)
++. .++.+.++.+..++++|+++.++.++.| +++..+++||.+. ++...++++.+
T Consensus 372 ~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~--~~~~~~~~f~lg~~~~~~~~~~~~~~ 433 (482)
T TIGR00907 372 LLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKG--RNTIAPGPFWLGKYGFFVNAVAVAWT 433 (482)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcCCcchHHHHHHHHHHH
Confidence 442 4899999999999999998877665443 3344456788743 33444444433
No 34
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-35 Score=326.48 Aligned_cols=427 Identities=16% Similarity=0.211 Sum_probs=303.5
Q ss_pred CCCCccccCCCCCCCcccccceEeeeccchhhhhHhHHhhhhh--hHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 115 DGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFT--WIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATN 192 (926)
Q Consensus 115 ~~~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g--~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~ 192 (926)
+++++...+|++++.+|.|..+.-+.+ ..++.|...-++.. +-++.+|+...+++|++++++.+|+++|++|+|+.
T Consensus 32 ~d~~~L~~lgYkqef~R~fs~~s~fg~--sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa 109 (550)
T KOG1289|consen 32 SDEELLAELGYKQELKREFSLFSIFGI--SFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSA 109 (550)
T ss_pred CCHHHHHHcCCchhhhhhhhHHHHHHH--HHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 455667789999999999997765422 11222322222222 33455799999999999999999999999999998
Q ss_pred CccccCchhhhHHHH----hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCC
Q 002413 193 GAMKGGGPYYLIGRA----LGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSP 268 (926)
Q Consensus 193 ~~p~~GG~Y~~isr~----lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 268 (926)
+|.+||.|+|+... +||..++.+||..+++++...|+...+.++.+........ + . -.+
T Consensus 110 -~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n----------p-----~-y~~ 172 (550)
T KOG1289|consen 110 -MPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN----------P-----N-YEP 172 (550)
T ss_pred -CCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC----------C-----C-Ccc
Confidence 99999999999975 5566778889999999999999888888877766543210 0 0 023
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccC
Q 002413 269 SLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKT 348 (926)
Q Consensus 269 ~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~ 348 (926)
..+....+..+++++..++|+.+.|+..+++.+...+.++.+++.+|.+.....+.. ||+.. ++.+.+|++.
T Consensus 173 ~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~-----gFns~---~~iF~~f~N~ 244 (550)
T KOG1289|consen 173 TNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKT-----GFNSG---SFIFGKFNNY 244 (550)
T ss_pred cceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CCCCC---ceeeeccccc
Confidence 345556777788889999999999999999999998888888866665544443321 33321 1212223322
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccCh--hhh
Q 002413 349 NNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATR--EEL 426 (926)
Q Consensus 349 ~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~--~~l 426 (926)
+ |+ .+. .+.|+-.|....+.++|+|+.+|++||+|||+|++|||++.++.+..++-.+..+.+.++++. |.+
T Consensus 245 s--gw-~~~---G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v 318 (550)
T KOG1289|consen 245 S--GW-KNN---GWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAV 318 (550)
T ss_pred C--CC-Ccc---hHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 1 11 112 356665555555688999999999999999999999999999999999999999988888874 344
Q ss_pred ccc----hh---hhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccc--cCCCCchhHHHHH
Q 002413 427 LTD----RL---LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV--AEGREPHIATFFT 497 (926)
Q Consensus 427 ~~~----~~---~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~--~~~g~P~~Aill~ 497 (926)
.++ ++ +....+.-....++..++++.+.++.+++.++||+.|+.||||.+|..+++++ ++.++|.+|+++.
T Consensus 319 ~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~ 398 (550)
T KOG1289|consen 319 LNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLS 398 (550)
T ss_pred hcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHH
Confidence 443 22 22334443446778888899999999999999999999999999999887764 4459999999999
Q ss_pred HHHHhhhhhc--cc---chhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-Ccccc------hh----HHHHHHHHH
Q 002413 498 AFICIGCVII--GN---LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRP-RWKFH------HW----SLSLLGSVF 561 (926)
Q Consensus 498 ~~i~~i~~li--g~---~~~l~~i~s~~~ll~y~~i~la~~~~~~~~~p~~rp-~fk~~------~~----~~~~~g~i~ 561 (926)
.+++.++.++ ++ ++.+.++..++.+++|+...++-+.+.| + ++|| ||... ++ |..+.-.++
T Consensus 399 ~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r--~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil 475 (550)
T KOG1289|consen 399 CIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGR--D-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVIL 475 (550)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecc--c-ccCCCCccccccccchHHHHHHHHHHHHHHH
Confidence 9998666543 33 8999999999999999666444444332 2 4544 33322 11 344444555
Q ss_pred hccCCC----CcccccceeE
Q 002413 562 CIANQV----HPKNWYPIPL 577 (926)
Q Consensus 562 c~~~~~----~~knw~P~~L 577 (926)
|+.... ..-||.+.++
T Consensus 476 ~fP~~~pvT~~~MNya~VV~ 495 (550)
T KOG1289|consen 476 CFPSVYPVTADNMNYACVVY 495 (550)
T ss_pred hCCcccCCCcccCceEEEee
Confidence 553322 2347776543
No 35
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=2.8e-33 Score=328.62 Aligned_cols=365 Identities=16% Similarity=0.227 Sum_probs=251.7
Q ss_pred hhccchHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 160 VGMGGIGDSLLVVAFCGSCT-FLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVET 238 (926)
Q Consensus 160 ~g~aG~~~~li~~~i~~~i~-~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~ 238 (926)
.+.+|+ .+++.|++++++. ++++++++||++. +|.+||.|.|++|++||.+||..||.+|+++++..+......+..
T Consensus 25 ~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~-~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~ 102 (474)
T TIGR03813 25 EAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATA-WPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVS 102 (474)
T ss_pred HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345675 4566788887765 5799999999998 999999999999999999999999999999977655433322222
Q ss_pred HHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHH-HHHHh
Q 002413 239 FLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP-VLLSIF-CIFVG 316 (926)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~-~ll~i~-~iiig 316 (926)
+....+.... ...+ ....+....+.++++++++++|++|+|.+++++.+...+ +++.++ +++++
T Consensus 103 ~~~~~~~~~~-------------~~~~-~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~ 168 (474)
T TIGR03813 103 LAFIGPEATV-------------DESL-AGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILG 168 (474)
T ss_pred HHHhcCcccc-------------Cccc-ccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111000 0000 011222234556666778899999999999999886544 344433 33334
Q ss_pred hhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchh
Q 002413 317 ILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIP 396 (926)
Q Consensus 317 ~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP 396 (926)
++....+++.. .++++ +++.|++. + +..+.. .+..+++|.|+|.++..+||+|||+|++|
T Consensus 169 ~~~~~~g~~~~--~~~~~----~~~~p~~~-----------~--~~~~~~-~~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 169 ISYLLTGGESQ--IPLRW----DDAFPDFT-----------N--FDNVVL-AASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHcCCCCC--CCCCH----HHhCCCcc-----------c--cccHHH-HHHHHHHHhchhHhHHHHHhccCcccchh
Confidence 43322221110 11111 11122110 1 112222 22356799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-hh----hh--hccc-CchHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 002413 397 IGTLAATLTTTALYVISVLLFGAAATREELLTD-RL----LT--ATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLA 468 (926)
Q Consensus 397 ~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-~~----~~--~~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~l~ 468 (926)
||++.+++++.++|++..+.+..++|.+++..+ +. .. ...+ .....++.+.++++++++.++.+++.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888776432 21 11 1112 2345677788888999999999999999999
Q ss_pred HHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhh----ccc----chhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 002413 469 AIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVI----IGN----LDLITPTITMFFLLCYSGVNLSCFLLDLLD 539 (926)
Q Consensus 469 alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~l----ig~----~~~l~~i~s~~~ll~y~~i~la~~~~~~~~ 539 (926)
++||||.+|+ ++. .+|+|+|++|++++.+++.++.+ ..+ ++++.++.+..+++.|++++++.+++|+ +
T Consensus 309 a~ardg~lP~--~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~-~ 385 (474)
T TIGR03813 309 AVAKAGYLPT--FFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRY-S 385 (474)
T ss_pred HHhhcCCCCH--HHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 9999999995 443 36889999999999887543222 122 6789999999999999999999888884 5
Q ss_pred CCCCCCCcccch-----hHHHHHHHHHhc
Q 002413 540 APSWRPRWKFHH-----WSLSLLGSVFCI 563 (926)
Q Consensus 540 ~p~~rp~fk~~~-----~~~~~~g~i~c~ 563 (926)
+|+.+++||.|. |....++.+.|+
T Consensus 386 ~~~~~rpf~~p~g~~g~~~~~~~~~~~~~ 414 (474)
T TIGR03813 386 QPDRPRPYRIPGGLAGMWFIGGLGFVGSA 414 (474)
T ss_pred CCCCCCCeEecCCccchhHHHHHHHHHHH
Confidence 567778888863 445666666655
No 36
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-33 Score=324.60 Aligned_cols=377 Identities=20% Similarity=0.296 Sum_probs=290.8
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
.+++|.+..+......++.|.++|...+.....+ +...+. |++++++.++++++++|+++. +|++||.|.|+++.+|
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~-~li~~~~~~~~a~~~~el~~~-~p~~GG~y~~~~~~~g 87 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILA-WLIAGIIILFLALSYAELSSA-IPSAGGAYAYAKRALG 87 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHH-HHHHHHHHHHHHHHHHHHHhc-CCCCCCeeeehhhhcC
Confidence 3566666655433344556677777777666555 344444 899999999999999999996 9999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 002413 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (926)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~ 289 (926)
|.+|+.+||.+++++....+.....++.++...++..+.+ ..+ .+...+++.+++++++++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~~~~~ln~ 150 (466)
T COG0531 88 PRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL----------------SIG-PLLIILIALALIALLTLLNL 150 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh----------------cCC-chHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888887777643110 001 14556788899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHH
Q 002413 290 GGVKIINRVAPTFLIPVLLSIFCIFVG-ILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV 368 (926)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~ll~i~~iiig-~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~ 368 (926)
+|+|..++++.+..+++++.++.+.+. .+...... .+....+.. .++....+...+
T Consensus 151 ~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~--------------~~~~~~~~~---------~~~~~~~~~~~~ 207 (466)
T COG0531 151 RGIKASAKINSIITILKIIILLIFIILGLFAFGFSN--------------GNLFAPFNP---------GGGSFGGILAAI 207 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--------------cccCCCccc---------ccchHHHHHHHH
Confidence 999999999999999999988866554 43222111 011111100 011223577788
Q ss_pred HHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhhhh---cccCchH
Q 002413 369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT----DRLLTA---TIAWPFP 441 (926)
Q Consensus 369 ~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~----~~~~~~---~~~~~~~ 441 (926)
...+++|.|+|.+++++||+|||+|++|||++.+++.++++|++..+.+....+.+++.. .+.... ..+....
T Consensus 208 ~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~ 287 (466)
T COG0531 208 LLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGA 287 (466)
T ss_pred HHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHH
Confidence 888999999999999999999999999999999999999999999999999998865443 333211 1223567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhh-hhhcc----cchhhhhH
Q 002413 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIG-CVIIG----NLDLITPT 516 (926)
Q Consensus 442 ~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i-~~lig----~~~~l~~i 516 (926)
.++.+.++++++++.+++..+.+|.+++|||||.+|+.....|+++++|++|++++.+++.+ ..... .++.+..+
T Consensus 288 ~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~ 367 (466)
T COG0531 288 IIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL 367 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 88999999999999999999999999999999999973333356788999999999999983 33222 36899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccc
Q 002413 517 ITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH 550 (926)
Q Consensus 517 ~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~ 550 (926)
.+..+++.|.+.+++.+.+|++ .|+.++++|.+
T Consensus 368 ~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~ 400 (466)
T COG0531 368 ASVAFLIAYLLVALALLVLRRK-KPDLKRPFRLP 400 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccc
Confidence 9999999999999999988864 56555655554
No 37
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=8.7e-33 Score=325.41 Aligned_cols=358 Identities=19% Similarity=0.247 Sum_probs=246.5
Q ss_pred hhccchHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcc-ccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHH---HHH
Q 002413 160 VGMGGIGDSLLVVAFCGSC-TFLTSISLSAIATNGAM-KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMY---VLG 234 (926)
Q Consensus 160 ~g~aG~~~~li~~~i~~~i-~~~~~ls~aElat~~~p-~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~---~~g 234 (926)
.+..|+. ++..|++++++ .++++++++||+++ +| .+||.|.|++|++||.+||..+|.+|+.+.+..+.. ..+
T Consensus 28 ~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~-~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~ 105 (507)
T TIGR00910 28 FATSGFH-LVFFLLLGGILWFIPVALCAAEMATV-DGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILG 105 (507)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455743 34445555554 57799999999998 86 899999999999999999999999999887544332 223
Q ss_pred HHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HH-H
Q 002413 235 AVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLS-IF-C 312 (926)
Q Consensus 235 ~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~-i~-~ 312 (926)
+..|+.. ++.. ....+...+..++++++++++|+.|+|..++++.+..++.++. ++ +
T Consensus 106 ~~~y~~~-~~~~--------------------~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~~il 164 (507)
T TIGR00910 106 ALSYILK-FPAL--------------------NEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFIL 164 (507)
T ss_pred HHHHHhc-Cchh--------------------ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 1111 0112223345556777889999999999999998765543333 22 2
Q ss_pred HHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhc
Q 002413 313 IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQ 392 (926)
Q Consensus 313 iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~ 392 (926)
++++.+....+++... .++. +++.|++.. .+....+..+.++|.|+|..++++||+|||+
T Consensus 165 i~l~~~~~~~g~~~~~--~~~~----~~~~p~~~~--------------~~~~~~~~~~~faf~G~E~~a~~a~E~knP~ 224 (507)
T TIGR00910 165 FALAAAYFHGGAPIAI--EIDS----HAFFPDFSK--------------VGTLVVFVAFIGAYMGVEASASHINELENPG 224 (507)
T ss_pred HHHHHHHHhCCCcccc--CCcH----HhcCCCccc--------------ccHHHHHHHHHHHHhcHHHHHHHHHHccCCc
Confidence 2233332222221100 0000 112222211 1233344445779999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-hhhh------hccc---CchHHHHHHHHHHHHHHHHHHHhhh
Q 002413 393 RSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-RLLT------ATIA---WPFPAVIHIGIILSTLGAALQSLTG 462 (926)
Q Consensus 393 rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-~~~~------~~~~---~~~~~ii~~~il~s~lss~~s~l~~ 462 (926)
|++|||++.+++++.++|++..+.++.++|.+++..+ .... ...+ .+...++.+.++++.+++.++++++
T Consensus 225 r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~ 304 (507)
T TIGR00910 225 RDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVG 304 (507)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888888888775422 1111 1111 1234577788888999999999999
Q ss_pred hhHHHHHHHhCCCCCccccccc-cCCCCchhHHHHHHHHHhhhhhc----c-----cchhhhhHHHHHHHHHHHHHHHHH
Q 002413 463 APRLLAAIANDDILPVLNYFKV-AEGREPHIATFFTAFICIGCVII----G-----NLDLITPTITMFFLLCYSGVNLSC 532 (926)
Q Consensus 463 asR~l~alArDg~lP~~~~~~~-~~~g~P~~Aill~~~i~~i~~li----g-----~~~~l~~i~s~~~ll~y~~i~la~ 532 (926)
.+|+++++||||.+|+ ++.+ +|+|+|++|++++++++.++.++ + .++.+.++.++.+++.|.++.++.
T Consensus 305 ~sR~l~~~ardg~lP~--~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~ 382 (507)
T TIGR00910 305 PSRGMFAAAQKGLLPA--AFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGY 382 (507)
T ss_pred HHHHHHHhcccCCcCH--HHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 4443 68899999999999988654321 1 246677788999999999999999
Q ss_pred HHHhhcCCCCCCCCcccch-----hHHHHHHHHHhc
Q 002413 533 FLLDLLDAPSWRPRWKFHH-----WSLSLLGSVFCI 563 (926)
Q Consensus 533 ~~~~~~~~p~~rp~fk~~~-----~~~~~~g~i~c~ 563 (926)
+++|+ ++|+.+|+||.|. +....+|++.|+
T Consensus 383 i~lr~-k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~ 417 (507)
T TIGR00910 383 FVLIL-KHPDLKRTFNIPGGIGGKLIIAGIGFLLSI 417 (507)
T ss_pred HHHHH-hcCCCCCCeEecCCccchhhHHHHHHHHHH
Confidence 99875 5677888898862 345566666555
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2.1e-32 Score=317.48 Aligned_cols=367 Identities=19% Similarity=0.287 Sum_probs=277.4
Q ss_pred hhHhHHhhhhhhHhhccchHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHH
Q 002413 147 ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCT-FLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (926)
Q Consensus 147 i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~-~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~ 225 (926)
++|++.|... ..+.+|+. .++.+++++++. ++.+++++|+++. +|++||.|.|+++.+||.+|+..||.+++++.
T Consensus 14 ~~g~gi~~~~--~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~ 89 (426)
T PF13520_consen 14 IIGSGIFFSP--AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYI 89 (426)
T ss_dssp HHTTTTTTHH--HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcCeeeehhhhcccccchhcccceeEEEee
Confidence 5677766644 56678886 566777777777 8999999999998 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002413 226 VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP 305 (926)
Q Consensus 226 ~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~ 305 (926)
...+.....+++++...+... . .+..+...+++++++++++++|++|+|..++++.++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 150 (426)
T PF13520_consen 90 LSLASVASSFASYLLSLFGPD-L------------------NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVI 150 (426)
T ss_dssp HHHHHHHHHHHHHHTTTTTGG-G------------------TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhccccc-c------------------ccccchheeeeecccccceEeeechhhhhhhhhhhhhhh
Confidence 988888888888887655321 0 112334567788889999999999999999999999999
Q ss_pred HH-HHHHHHH-HhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhh
Q 002413 306 VL-LSIFCIF-VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSN 383 (926)
Q Consensus 306 ~l-l~i~~ii-ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~ 383 (926)
++ ..+++++ +++.....+ ++... ...+.+ + .+.++ ..++.++...+++|.|+|+.++
T Consensus 151 ~i~~~l~~~i~~~~~~~~~~-------~~~~~--~~~~~~-~---------~~~~~--~~~~~~~~~~~~~~~G~e~~~~ 209 (426)
T PF13520_consen 151 KIVIPLLVLIILGIVSFSFS-------GFNSL--SFSLST-F---------FPSGW--PGFLAGFSVAFFAFSGFEAIAS 209 (426)
T ss_dssp HHHHHHHHHHHHHHHSTTCC-------HHH------SHSC-S---------SCSSS--SHHHHHHHHHGGGGTTTTHHHH
T ss_pred hhhhhhhhheeEEEeeeccc-------ccccc--cccccc-c---------CCccc--cchhhHHHHHHhhccccccccc
Confidence 99 4555444 354433211 11000 000100 1 11121 2366788889999999999999
Q ss_pred hcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-h------hh-hhcccCchHHHHHHHHHHHHHHH
Q 002413 384 RSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-R------LL-TATIAWPFPAVIHIGIILSTLGA 455 (926)
Q Consensus 384 ~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-~------~~-~~~~~~~~~~ii~~~il~s~lss 455 (926)
++||.|| |++|||++.++++..++|++..+.+....|.++...+ + .. ....+.+...++.++++++++++
T Consensus 210 ~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 287 (426)
T PF13520_consen 210 LAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGS 287 (426)
T ss_dssp GGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred ccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccc
Confidence 9999777 8999999999999999999999999999998876432 1 11 22234567789999999999999
Q ss_pred HHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhh-c-----ccchhhhhHHHHHHHHHHHHHH
Q 002413 456 ALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI-I-----GNLDLITPTITMFFLLCYSGVN 529 (926)
Q Consensus 456 ~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~l-i-----g~~~~l~~i~s~~~ll~y~~i~ 529 (926)
.++.+.+++|++++|||||.+|+..... +|+++|++|+++.++++.++.+ . .+++.+.++.++.+++.|.+..
T Consensus 288 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~-~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (426)
T PF13520_consen 288 INAFIFGASRLLYAMARDGVLPKWFAKV-NKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVI 366 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSGGGGTT-SSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred cchhhcchhhcccccccccchhhhhhhc-cccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999533223 4999999999999999955432 2 2578999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 530 LSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 530 la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
++++++|++ +|+.+| +.+.+...+++.+.++
T Consensus 367 ~~~~~~~~~-~~~~~r--~~~~~~~~i~~~~~~~ 397 (426)
T PF13520_consen 367 LAVLFLRRK-RPDLKR--IPYRPPVGIIGIIIIL 397 (426)
T ss_dssp HHHHHTHHH-SCSSGH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-cCCcCC--CCcchHHHHHHHHHHH
Confidence 999988864 454433 1112455666555554
No 39
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=7.4e-32 Score=318.06 Aligned_cols=371 Identities=13% Similarity=0.148 Sum_probs=247.3
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002413 160 VGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVE- 237 (926)
Q Consensus 160 ~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~-~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e- 237 (926)
...+|+...++.++.+.+..++++++++|++++ +|. +||.|+|+++.+||.+||..||.++.+++...+........
T Consensus 32 ~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~-~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~ 110 (496)
T PRK15238 32 FYLMGYSAIPWYILSAILFFIPFALMMAEYGSA-FKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIP 110 (496)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456787655544444445568899999999998 997 89999999999999999999999888876544332211111
Q ss_pred HHHHhcCCCCccchhhhccCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HHHH
Q 002413 238 TFLKAVPAAGMFRETITKVNGTATPEPIQSPSLH-DLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFV 315 (926)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~-~iii 315 (926)
.....++..... .+ ........ ...+++++++++++++|++|+|..++++++..+++++..+ .+++
T Consensus 111 ~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~ii~ 178 (496)
T PRK15238 111 FSTFIFGKDTTQ--------TW----HFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLLLV 178 (496)
T ss_pred HHHHHcCcchhh--------hh----hhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112211000 00 00000011 1124455566688999999999999999987776654432 2222
Q ss_pred h--hhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhcc
Q 002413 316 G--ILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQR 393 (926)
Q Consensus 316 g--~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~r 393 (926)
+ .+...++.... .++. .+|.+... +......+++..+...+++|.|+|..++++||+|||+|
T Consensus 179 ~~~~~~~~~~~~~~---~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 179 SIIILILNGGHFAQ---PIGV----SSFVTSPN---------PAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHcCCCccc---cccH----hhcccCCC---------CccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 1 11111111100 1110 11111000 00001245777777888899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--------hhhh-hc------------------ccCchHHHHHH
Q 002413 394 SIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--------RLLT-AT------------------IAWPFPAVIHI 446 (926)
Q Consensus 394 sIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--------~~~~-~~------------------~~~~~~~ii~~ 446 (926)
++|||++.+++++.++|++..+.++...|+++...+ +++. .. .+.....++++
T Consensus 243 ~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~ 322 (496)
T PRK15238 243 NFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTLGVWFARITGL 322 (496)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH
Confidence 999999999999999999998888888887765431 1110 00 01122336678
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc---cc------chhhhhH
Q 002413 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII---GN------LDLITPT 516 (926)
Q Consensus 447 ~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li---g~------~~~l~~i 516 (926)
+++++.+++.++.+++.+|.++++++||.+|+ ++. .+|+|+|++|++++.+++.+++++ +. |+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~--~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l 400 (496)
T PRK15238 323 SMFLAYTGAFFTLSYSPLKQLIEGTPKALWPK--KMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLM 400 (496)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhCccCcccH--HHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 88999999999999999999999999999996 443 358999999999998887655322 21 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccc-h----hHHHHHHHHHhc
Q 002413 517 ITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-H----WSLSLLGSVFCI 563 (926)
Q Consensus 517 ~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~-~----~~~~~~g~i~c~ 563 (926)
.++.++++|++++++++++|| +|+.+|+|+.+ . ++.++++.+.++
T Consensus 401 ~~~~~li~y~~~~~a~i~~r~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 450 (496)
T PRK15238 401 ANVSMTLPYLFLAGAFPFFKK--KKDIDRPFVVFKTKKSTLIATIVVVLVVG 450 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--ccCCCCCceecCCcceehhHHHHHHHHHH
Confidence 999999999999999999875 47776666553 2 344444444444
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.87 E-value=8.2e-20 Score=208.88 Aligned_cols=347 Identities=12% Similarity=0.063 Sum_probs=242.1
Q ss_pred hhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHH
Q 002413 145 QNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGN 224 (926)
Q Consensus 145 ~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~ 224 (926)
.+++|+++|...+...+. |...+++.++++++++++++++++|++++ +|.+||.|.|.++.+|+..|+.+||.+++..
T Consensus 8 gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~-~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~ 85 (381)
T TIGR00837 8 GTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLT-YPGGASFNTIAKDLLGKTGNIIAGLSLLFVL 85 (381)
T ss_pred hhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 447799999888765554 44455667788899999999999999998 9999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002413 225 AVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (926)
Q Consensus 225 ~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~ 304 (926)
....+.++.+.++++...++.... ...+..+..+++.+++..+|+.|+|..++++.++..
T Consensus 86 ~~~~~ay~~~~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~ 145 (381)
T TIGR00837 86 YILTYAYISGGGSILSRLIGEYFG--------------------FPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIF 145 (381)
T ss_pred HHHHHHHHHccHHHHHHHHHHhcC--------------------CCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 777788888777777776653200 012234566677778889999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhh-hHhh
Q 002413 305 PVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIM-AGSN 383 (926)
Q Consensus 305 ~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e-~~a~ 383 (926)
++++.++.+++..+... + .+|+.|.... +.+ ...+..++...+++| |++ ..+.
T Consensus 146 ~~l~~l~~~ii~~~~~~-----------~----~~~~~~~~~~--------~~~--~~~~~~a~~~~~~~f-g~~~~i~~ 199 (381)
T TIGR00837 146 GKIIAFALVFSGLLPHV-----------K----GDLLLDVALD--------TSY--WPYILSALPVCLTSF-GFHGNVPS 199 (381)
T ss_pred HHHHHHHHHHHHHHhhc-----------c----HHHHhcCccc--------ccc--HHHHHHHHHHHHHHH-HcccccHH
Confidence 98887775554322110 0 0233321000 001 234566777777777 565 5778
Q ss_pred hcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--------hh---hhhccc-CchHHHHHHHHHHH
Q 002413 384 RSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--------RL---LTATIA-WPFPAVIHIGIILS 451 (926)
Q Consensus 384 ~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--------~~---~~~~~~-~~~~~ii~~~il~s 451 (926)
..+|.++++|++||+++.+..+++++|++..+.....+|++++.+. +. .....+ +....++.++.+++
T Consensus 200 ~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~a 279 (381)
T TIGR00837 200 LYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFA 279 (381)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 8999987899999999999999999999999999999998876421 11 111122 33457788888889
Q ss_pred HHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHHHHHH
Q 002413 452 TLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLS 531 (926)
Q Consensus 452 ~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ll~y~~i~la 531 (926)
..++.++...+.++-+..+=+ . .+++++ |..+.+++.+..+++........+..+...+++.++..+.+.
T Consensus 280 l~tS~~g~~l~~~d~l~~~~~--------~-~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p 349 (381)
T TIGR00837 280 LASSFLGVTLGLFDYLADLFK--------F-DDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIP 349 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhC--------C-CcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887755443211 1 112333 567777777777666554444455556566666776666666
Q ss_pred HHHHhh--cCCCCCCCCcccch
Q 002413 532 CFLLDL--LDAPSWRPRWKFHH 551 (926)
Q Consensus 532 ~~~~~~--~~~p~~rp~fk~~~ 551 (926)
++...+ ++.|+ ++||.|.
T Consensus 350 ~l~~~~~r~~~~~--~~~~~~~ 369 (381)
T TIGR00837 350 ALLAWKARKKFPN--AGYRVWG 369 (381)
T ss_pred HHHHHHHHhcCCC--CCccccC
Confidence 655522 22243 4788774
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.62 E-value=6.7e-13 Score=150.69 Aligned_cols=269 Identities=14% Similarity=0.101 Sum_probs=190.5
Q ss_pred hhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHH
Q 002413 145 QNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGN 224 (926)
Q Consensus 145 ~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~ 224 (926)
.+++|++++...+...+.+|. .+++++++++++.++.+++++|++++ +|.. |.|.|..+.+|+.+|+..+|.|++..
T Consensus 14 ~~~iG~gil~~P~~~~~~a~~-~~wi~~ll~~~~~~~~~~~~~~l~~~-~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~~~ 90 (359)
T TIGR00912 14 STMIGSGLLTLPALVSQSAGQ-DGWISIILGGLIIIFLLCLMIKIMSK-FPEK-NFSEILSKYLGKILGRLLSILFILYF 90 (359)
T ss_pred HHHHHHHHHhhhHHHHhccCC-CeeHHHHHHHHHHHHHHHHHHHHHHH-CCCC-CHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 447799988888888877775 46789999999999999999999998 8976 79999999999999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002413 225 AVAGAMYVLGAVETFLKAV-PAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFL 303 (926)
Q Consensus 225 ~~~~a~~~~g~~e~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~ 303 (926)
...++.....+++++...+ |. .+..++++++++++..++..|++..+|++.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~-------------------------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~ 145 (359)
T TIGR00912 91 FLIAAYLIRIFADFIKTYLLPR-------------------------TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILL 145 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-------------------------CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 7776666666677765432 21 122356667777788889999999999999998
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHH-HHHhhhhhhhhhHh
Q 002413 304 IPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV-GLFFPAVTGIMAGS 382 (926)
Q Consensus 304 ~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~-~i~f~a~tG~e~~a 382 (926)
.++++..+.+++... .... . .+|+.|-+.. | ...+.... ...+++|.|+|...
T Consensus 146 ~~~i~~~~~il~~~~-~~~~-------~------~~~l~P~~~~----------g--~~~~~~~~~~~~~~~f~g~~i~~ 199 (359)
T TIGR00912 146 IIFLILFILVLILLA-PKLG-------N------IKNLLPVLEN----------G--LSPILKGAYPVVTFAFGEIEIFF 199 (359)
T ss_pred HHHHHHHHHHHHHHh-cccc-------c------HHHccCcccc----------C--cHHHHhhhhHHhhhhhHHHHHHH
Confidence 877665322222211 1100 0 1455443321 1 12333333 25667899999999
Q ss_pred hhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhhh--cccCc-----hHHHHHHHHHHHHH
Q 002413 383 NRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLTA--TIAWP-----FPAVIHIGIILSTL 453 (926)
Q Consensus 383 ~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~~--~~~~~-----~~~ii~~~il~s~l 453 (926)
...++.|||+ ++||++..++++++++|++..+......+++..... |.... ....+ ...++...-+.+.+
T Consensus 200 ~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f 278 (359)
T TIGR00912 200 LLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIF 278 (359)
T ss_pred HHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999975 699999999999999999998888888888766543 22211 11111 12333444445566
Q ss_pred HHHHHHhhhhhHHHH
Q 002413 454 GAALQSLTGAPRLLA 468 (926)
Q Consensus 454 ss~~s~l~~asR~l~ 468 (926)
.....+++.+.+.+.
T Consensus 279 ~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 279 VKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677788877764
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.61 E-value=1.1e-12 Score=147.38 Aligned_cols=341 Identities=14% Similarity=0.101 Sum_probs=224.8
Q ss_pred hHhHHhhhhhhHhhccch--HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHH
Q 002413 148 LGIIYYIRFTWIVGMGGI--GDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (926)
Q Consensus 148 ~Gv~lFl~~g~i~g~aG~--~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~ 225 (926)
+|.+-++..+.+-.++|- ..++++|+++++..-+.++. + .|++||.|.+..+.+||.+|+..+|..++...
T Consensus 9 fGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------a-v~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iG 81 (378)
T TIGR00796 9 FGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------A-LALVGGGYDSLSARIGKVFGILFTVILYLTIG 81 (378)
T ss_pred HhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------e-eeecCCCHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 477777777767667763 45677888888877766655 4 78999999999999999999999999776543
Q ss_pred HHHHH--HHHHHHH-HHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002413 226 VAGAM--YVLGAVE-TFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTF 302 (926)
Q Consensus 226 ~~~a~--~~~g~~e-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~ 302 (926)
-..+. .+....| .+..++|.. .......++.+++..+..++|+.+.|...+++.++
T Consensus 82 P~~aiPRtaa~s~e~~i~p~~~~~---------------------~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~L 140 (378)
T TIGR00796 82 PLFAIPRTATVSFEMGIAPLLHSP---------------------TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFL 140 (378)
T ss_pred hchhhhHHHHHHHHHHHHhccCcc---------------------cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHH
Confidence 22211 1111112 122223220 01122345677777788889999999999999999
Q ss_pred HHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhh-----
Q 002413 303 LIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVT----- 376 (926)
Q Consensus 303 ~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~t----- 376 (926)
+-++++.++.+++ |++. +.+.... . ..+|.. + ..|..++--.+..+.
T Consensus 141 TP~lLi~l~~lii~g~~~-p~g~~~~------------~-~~~~~~----------~---~~f~~g~l~GY~TmD~laal 193 (378)
T TIGR00796 141 TPALLVTLLALIIKALLW-PAGPILA------------A-SGAYAS----------Q---QAFSKGFLEGYLTMDALAAL 193 (378)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCcCC------------c-cccccc----------c---cHHHHHHHHHHHHHHHHHHH
Confidence 9999999886665 5543 2211100 0 000110 0 012233333333333
Q ss_pred --hhhhHhhhcc-cchhhccchhhHHHHHH-HHHHHHHHHHHHHHHhccChhhhcc---c-h----hhhhcccCchHHHH
Q 002413 377 --GIMAGSNRSA-SLKDTQRSIPIGTLAAT-LTTTALYVISVLLFGAAATREELLT---D-R----LLTATIAWPFPAVI 444 (926)
Q Consensus 377 --G~e~~a~~s~-E~knP~rsIP~a~~~ai-~~~~v~Yil~~~~~~~~v~~~~l~~---~-~----~~~~~~~~~~~~ii 444 (926)
|+-...++.+ |.|||++..|+.++.++ ..+.+.|+...+.+....+.+.+.. . . ......|..+..++
T Consensus 194 ~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll 273 (378)
T TIGR00796 194 VFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLL 273 (378)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHH
Confidence 6666666666 99999999999999998 6666677777776666665543321 1 1 12334566677899
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHH
Q 002413 445 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLC 524 (926)
Q Consensus 445 ~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ll~ 524 (926)
.+.++++|++++++-+.+.++.+..+ ++| .|+++.++...+...++....+|.+..+..-...+.
T Consensus 274 ~i~v~lACLtT~iGli~~~a~~f~~~-------------~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~ 338 (378)
T TIGR00796 274 GLIITLACLTTAVGLTTACSEYFHKL-------------VPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMII 338 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999999999998876654321 122 899999998888888887888999999888888887
Q ss_pred HHHHHHHHHH--HhhcCCCCCCCCcccchhHHHHHHH
Q 002413 525 YSGVNLSCFL--LDLLDAPSWRPRWKFHHWSLSLLGS 559 (926)
Q Consensus 525 y~~i~la~~~--~~~~~~p~~rp~fk~~~~~~~~~g~ 559 (926)
|-......++ +| ++.|+.+++||.+-....+++.
T Consensus 339 YP~~i~lill~ll~-~~~~~~~~~y~~~~~~~~~~~~ 374 (378)
T TIGR00796 339 YPLAIVLILLSFLR-KLWDSKRAVYQITLIVALLFSI 374 (378)
T ss_pred HHHHHHHHHHHHHH-HhcCCCCCeeehHHHHHHHHHH
Confidence 7554444443 44 4567778888877554444443
No 43
>PHA02764 hypothetical protein; Provisional
Probab=99.51 E-value=2.7e-12 Score=134.11 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002413 167 DSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAA 246 (926)
Q Consensus 167 ~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~ 246 (926)
..+++|+++++++++.+++++|++++ +|++||.|.|++|++||.+|+..||.+|+.+.++.+... =-+.+ + +.-
T Consensus 47 nlLLAWLLGGLlALPgAL~YAELGSA-mPrAGGdYVYISRAFGP~~GFLvG~a~WLtl~~G~Pal~--~l~~~-~-~~i- 120 (399)
T PHA02764 47 NLLFAILIGAVFEIPLLLMYYKLTTK-FPLNGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPILG--DLVLL-N-FNI- 120 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCceEEEhHHhhCccHHHHHHHHHHHHHHhhcchhh--heeee-e-eee-
Confidence 36789999999999999999999998 999999999999999999999999999999877655422 10110 0 000
Q ss_pred CccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 002413 247 GMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPA 326 (926)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~ 326 (926)
.+..-...+.... ..+..+-..|.+.+.|.-.++ .+.-.+++++...+
T Consensus 121 --------------------~~~~~~f~~~~s~--~~i~~~i~~~~~~~~~~v~il------~~a~~i~aif~~~~---- 168 (399)
T PHA02764 121 --------------------QNQFEQFLIVESL--FPIVLLIIANKKIYAKIVDIL------AIAQIIIAIFIAFK---- 168 (399)
T ss_pred --------------------HHHHHHHHHHHHH--HHHHHHHHcccHHHHHHHHHH------HHHHHHHHHHhhcc----
Confidence 0000011111111 112222334677787765552 23322233332221
Q ss_pred CCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHH
Q 002413 327 PGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTT 406 (926)
Q Consensus 327 ~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~ 406 (926)
.++.. .+| |+-. .....+.-....+|.=+++....++|.||-+|+.-.|-..+...+
T Consensus 169 ----s~n~~--~~~----f~~s-------------nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~ 225 (399)
T PHA02764 169 ----SFNFQ--YQN----FTIS-------------NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIV 225 (399)
T ss_pred ----ceeEE--Ecc----eeeh-------------HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHH
Confidence 11000 011 2111 123333333344677789999999999999999988888877776
Q ss_pred HHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccC
Q 002413 407 TALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE 486 (926)
Q Consensus 407 ~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~ 486 (926)
.++-+..+ +..+ .+..+....-.+|-..-..--.||+.++||-|+.+|. .|.|-+
T Consensus 226 ~~~~ii~s--------y~n~---------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe--~f~k~~ 280 (399)
T PHA02764 226 AILSIIDS--------YSNL---------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPE--KFSKIN 280 (399)
T ss_pred HHHHHHHh--------hhhH---------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchH--HHhccC
Confidence 66544422 1110 1222223333444444455568999999999999995 455556
Q ss_pred CCCch
Q 002413 487 GREPH 491 (926)
Q Consensus 487 ~g~P~ 491 (926)
.++|.
T Consensus 281 ~nv~~ 285 (399)
T PHA02764 281 PNVLL 285 (399)
T ss_pred CCcee
Confidence 77887
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.33 E-value=3.7e-09 Score=120.69 Aligned_cols=273 Identities=14% Similarity=0.142 Sum_probs=193.6
Q ss_pred hHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHH
Q 002413 148 LGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVA 227 (926)
Q Consensus 148 ~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~ 227 (926)
+|.|+ +.++...+.+|...+++..+++..+++.+++.++|+..+ .++.-+.-..+++.+|+..+..++..|++..-..
T Consensus 17 IGAGm-LaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~-~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~l 94 (394)
T PF03222_consen 17 IGAGM-LALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLN-TPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYAL 94 (394)
T ss_pred HhHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 35543 234556788898889999999999999999999999998 8888889999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002413 228 GAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVL 307 (926)
Q Consensus 228 ~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~l 307 (926)
...|+.+.++.+.+.++... ....+.....+++.+++..+.+.|.|...|++.++...++
T Consensus 95 l~AYisg~g~~~~~~l~~~~--------------------~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 95 LVAYISGGGSILSSLLGNQL--------------------GTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHccHHHHHHHHHHhc--------------------CCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77899998888888775431 0122334566667777777888999999999999999888
Q ss_pred HHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhccc
Q 002413 308 LSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSAS 387 (926)
Q Consensus 308 l~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E 387 (926)
++++.+++..+-. .+. +|+.. ..+ ........+..+.+.+++|.-...+..+...
T Consensus 155 ~~~~~l~~~~~p~-----------~~~----~~L~~-~~~---------~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~ 209 (394)
T PF03222_consen 155 ISFIILVVYLIPH-----------WNP----SNLLD-APP---------SPSDWSYILPALPVLVFSFGFHNIVPSLVKY 209 (394)
T ss_pred HHHHHHHHHHhhh-----------cCH----HHhhc-ccc---------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8877665544311 111 12111 000 0112334567788888888888888999888
Q ss_pred chhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----c----hhh---hhcc-cCchHHHHHHHHHHHHHHH
Q 002413 388 LKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT----D----RLL---TATI-AWPFPAVIHIGIILSTLGA 455 (926)
Q Consensus 388 ~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~----~----~~~---~~~~-~~~~~~ii~~~il~s~lss 455 (926)
.++-+|.+.|+++.+..+..++|++-.+.+.+.+|+++..+ + ... .... ++....+..+..+++..+|
T Consensus 210 ~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TS 289 (394)
T PF03222_consen 210 LGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATS 289 (394)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 88778889999999999999999998888888888876421 1 111 1112 2223444555556666666
Q ss_pred HHHHhhhhhHHH
Q 002413 456 ALQSLTGAPRLL 467 (926)
Q Consensus 456 ~~s~l~~asR~l 467 (926)
-++...+....+
T Consensus 290 FlGv~lgl~d~l 301 (394)
T PF03222_consen 290 FLGVYLGLFDFL 301 (394)
T ss_pred HHHHHHHHHHHH
Confidence 666655555544
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.31 E-value=1e-09 Score=125.11 Aligned_cols=237 Identities=12% Similarity=0.088 Sum_probs=171.2
Q ss_pred hhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCchhhhHHHHhCCchhHHHHHHHHH
Q 002413 144 LQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGGPYYLIGRALGPEVGVSIGLCFFL 222 (926)
Q Consensus 144 ~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~-~GG~Y~~isr~lGp~~Gf~~Gw~~~l 222 (926)
..+.+|++++.... .+++.|....+++.+++..+++.....+.|.... .+. +++.+.++++.+|+.+|...++.|++
T Consensus 13 ~gt~IGaGiL~LP~-~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~-~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~ 90 (397)
T TIGR00814 13 YGTAIGAGVLFLPI-QAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLS-SKNPCEDITEVVEEHFGKNWGILITLLYFF 90 (397)
T ss_pred HHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHcCHHHHHHHHHHHHH
Confidence 44567888765554 4677787777777777777777777778888665 554 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002413 223 GNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTF 302 (926)
Q Consensus 223 ~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~ 302 (926)
.....+..|+.+..+.+.+++...- ..+.....+.++++++++..++..|.|...|++.++
T Consensus 91 ~~~~i~~aY~~~~~~~~~~fl~~~~-------------------~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il 151 (397)
T TIGR00814 91 AIYPILLIYSVAITNDSASFLVNQL-------------------GTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPL 151 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------------------CCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 9988888888888777766654310 011112225566667777888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHh
Q 002413 303 LIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS 382 (926)
Q Consensus 303 ~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a 382 (926)
...+++.++.+.+..+ +. ++. +|+... . . .+......+.+..+.+++|.|+|..+
T Consensus 152 ~~~~ii~l~~l~~~li--p~---------~~~----~~L~~~-p--------~-~~~~~~~i~~alpv~~~SF~~~~iIs 206 (397)
T TIGR00814 152 VFPLVLILVLLSLYLI--PH---------WNG----ANLTTF-P--------S-FNGFLKTLWLTIPVMVFSFNHSPIIS 206 (397)
T ss_pred HHHHHHHHHHHHHHHH--HH---------cCH----HHHhcC-C--------c-ccchHHHHHHHHHHHHHHHHccccch
Confidence 8877766665444332 10 111 222110 0 0 01123457778899999999999999
Q ss_pred hhc----ccchhh---ccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 002413 383 NRS----ASLKDT---QRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (926)
Q Consensus 383 ~~s----~E~knP---~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l 426 (926)
.++ +|.+|| .|.+-|.+..+..+..++|+...+.+....+++++
T Consensus 207 sl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~ 257 (397)
T TIGR00814 207 SFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEA 257 (397)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 998 666655 57778899999999999999988888888888775
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.12 E-value=1.1e-07 Score=107.78 Aligned_cols=233 Identities=14% Similarity=0.132 Sum_probs=164.5
Q ss_pred hhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHH
Q 002413 147 ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAV 226 (926)
Q Consensus 147 i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~ 226 (926)
.+|.+++ .++.+.+.+|-..+++..+++.+++..+++.+.|...+ .|.+-+.-.++.+.+|+.+....+..+++-.-.
T Consensus 24 ~IGaGML-aLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~-~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~ 101 (414)
T PRK10483 24 IIGAGMF-SLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLN-YRIGSSFDTITKDLLGKGWNVVNGISIAFVLYI 101 (414)
T ss_pred hHhHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 4465543 35567778898888999999999999999999999998 888888899999999998666555555444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002413 227 AGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPV 306 (926)
Q Consensus 227 ~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ 306 (926)
....|+.+.++.+.+.++..+. ..+..+-++++.+++..+.+.|.|...|++.++...+
T Consensus 102 Ll~AYisg~g~il~~~l~~~~~---------------------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~ 160 (414)
T PRK10483 102 LTYAYISASGSILHHTFAEMSL---------------------NVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHhCcHHHHHHHHHhcCC---------------------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667788888888777653211 1123356677888888889999999999999999998
Q ss_pred HHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcc
Q 002413 307 LLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSA 386 (926)
Q Consensus 307 ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~ 386 (926)
+++++..+.+.+-... . +|+.+. ... .+......+..+.+.+++|.=...++.+..
T Consensus 161 i~~f~~~~~~l~~~i~-----------~----~~L~~~-~~~--------~~~~~~~~~~alPvl~~SFgfh~iIPsl~~ 216 (414)
T PRK10483 161 VITFFLTFGSLLGHVQ-----------P----ATLFNV-AES--------NASYAPYLLMTLPFCLASFGYHGNVPSLMK 216 (414)
T ss_pred HHHHHHHHHHHHhhcC-----------H----HHHhcc-ccc--------cchhHHHHHHHHHHHHhhccCCCcchHHHH
Confidence 8887766555431110 0 121110 000 000011244556666666655566777766
Q ss_pred cchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 002413 387 SLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (926)
Q Consensus 387 E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l 426 (926)
..++-.|.+.|+++.+..+..++|++-.+.+...+|++++
T Consensus 217 y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~ 256 (414)
T PRK10483 217 YYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEF 256 (414)
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 6665445999999999999999999988888888888774
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.10 E-value=1.3e-07 Score=107.75 Aligned_cols=228 Identities=11% Similarity=0.054 Sum_probs=163.4
Q ss_pred HhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHH
Q 002413 149 GIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAG 228 (926)
Q Consensus 149 Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~ 228 (926)
|.|+ +.++-..+.+|...+++..+++..++..+++-++|...+ .|.+-+...++.+.+|+..+..+++.|++..-...
T Consensus 18 GAGm-LaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~-~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll 95 (403)
T PRK15132 18 GAGM-LAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH-VPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALT 95 (403)
T ss_pred hHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4443 234556778899888988899998888999999998776 78778889999999999999999999988887788
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002413 229 AMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLL 308 (926)
Q Consensus 229 a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll 308 (926)
..|+.+.++.+.+.++..- .. ..+.....+++.++...+.+.|.|...|++.++...+++
T Consensus 96 ~AYisg~g~il~~~l~~~~-------------------~~-~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 96 AAYISGAGELLASSISDWT-------------------GI-SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKII 155 (403)
T ss_pred HHHHhCcHHHHHHHHHHhc-------------------cC-CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 8889987776666553210 00 001124555566666667888999999999999888887
Q ss_pred HHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccc
Q 002413 309 SIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASL 388 (926)
Q Consensus 309 ~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~ 388 (926)
.++..++..+ +. ++. +|+... + ...+ ..+..+.+++++|.=-..++.+..-.
T Consensus 156 ~~~~~~~~l~--p~---------~~~----~~L~~~--~-------~~~~----~~~~~iPvl~~SFgfh~iIpsl~~y~ 207 (403)
T PRK15132 156 FLVVMLALMM--PH---------IHK----VNLLTL--P-------LQQG----LALSAIPVIFTSFGFHGSVPSIVSYM 207 (403)
T ss_pred HHHHHHHHHH--Hh---------cCH----HHHhcC--C-------cccc----HHHHHHHHHHHHhhCCcccHHHHHHh
Confidence 7664444332 10 111 222110 0 0001 24456677777776666777777777
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 002413 389 KDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (926)
Q Consensus 389 knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l 426 (926)
++-.|.+.|+++.+..+..++|++-.+.+.+..|++++
T Consensus 208 ~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~ 245 (403)
T PRK15132 208 GGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTF 245 (403)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77778999999999999999999998888888888764
No 48
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.08 E-value=1.1e-07 Score=109.52 Aligned_cols=225 Identities=14% Similarity=0.165 Sum_probs=174.3
Q ss_pred hhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-chhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHH
Q 002413 156 FTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGG-GPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLG 234 (926)
Q Consensus 156 ~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~G-G~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g 234 (926)
++...+.+|...+++..++++.++++..+.++|.... .|+.. +.+..+++.+||.++..++..+.+........|.++
T Consensus 30 lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~ 108 (415)
T COG0814 30 LPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLS-SPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVG 108 (415)
T ss_pred hhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778899999999999999999999999999998 88885 999999999999999999999999888888888988
Q ss_pred HHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002413 235 AVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF 314 (926)
Q Consensus 235 ~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~ii 314 (926)
.++.+...++.... .. ..+..+..+++.+++..+.+.|.+..-|...++...+++.++++.
T Consensus 109 ~g~~l~~~~~~~~~------------------~~-~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~ 169 (415)
T COG0814 109 IGNLLASFLGNQFG------------------LN-PLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV 169 (415)
T ss_pred chhHHHHHHHhhcc------------------cC-CcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777664210 00 034456777777888889999999999999988888777776655
Q ss_pred HhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhccc
Q 002413 315 VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRS 394 (926)
Q Consensus 315 ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rs 394 (926)
+..+..... ++... ... ........++..+.+++++|++.-....+..|.+++.+.
T Consensus 170 ~~~~~~~~~---------------~~l~~-~~~--------~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~ 225 (415)
T COG0814 170 VYLIPHWNP---------------ANLFA-LPS--------ASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKK 225 (415)
T ss_pred HHHhcccCH---------------HHHhc-ccc--------cchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhH
Confidence 544321110 11100 000 000112357788999999999999999999999988777
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHhccChh
Q 002413 395 -IPIGTLAATLTTTALYVISVLLFGAAATRE 424 (926)
Q Consensus 395 -IP~a~~~ai~~~~v~Yil~~~~~~~~v~~~ 424 (926)
++|+++.+..+..++|++..+....+.+.+
T Consensus 226 ~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~ 256 (415)
T COG0814 226 AVRKAILIGSLIALVLYILVGFFVFGCFGSL 256 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999888777777665
No 49
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.00 E-value=3.9e-07 Score=103.37 Aligned_cols=234 Identities=9% Similarity=0.031 Sum_probs=162.1
Q ss_pred hhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHH
Q 002413 147 ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAV 226 (926)
Q Consensus 147 i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~ 226 (926)
.+|.+++ .++.+.+.+|-..+.+..+++.+++..+++.+.|...+ +|.+-+.-.++.+.+|+.+-...+..+++-.-.
T Consensus 22 ~IGAGML-aLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~-~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~ 99 (415)
T PRK09664 22 VIGGGMF-ALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLN-YPVGSSFNTITKDLIGNTWNIISGITVAFVLYI 99 (415)
T ss_pred cHhHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 3465543 35567778898888999999999999999999999998 898888999999999997666555555444444
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 002413 227 AGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPV 306 (926)
Q Consensus 227 ~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ 306 (926)
....|+.+.++.+.+.++... ....+....++++.+++..+.+.|.|...+++.++...+
T Consensus 100 Ll~AYisggG~il~~~l~~~~--------------------~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 100 LTYAYISANGAIISETISMNL--------------------GYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHhccHHHHHHHHhhhc--------------------cCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 556778888888877765310 001122356677888888899999999999999999888
Q ss_pred HHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCC--chhHHHHHHHHHhhhhhhhhhHhhh
Q 002413 307 LLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGA--VDWSFNALVGLFFPAVTGIMAGSNR 384 (926)
Q Consensus 307 ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~--~~~~f~~~~~i~f~a~tG~e~~a~~ 384 (926)
+++++..+.+..-.. +. +|+... .. ..+. .....+..+.+++++|.=-..++.+
T Consensus 160 ii~f~~~~~~l~~~i-----------~~----~~L~~~-~~--------~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl 215 (415)
T PRK09664 160 IISFVIVFGSFFFQV-----------DY----SILRDA-TS--------TTAGTSYFPYIFMALPVCLASFGFHGNIPSL 215 (415)
T ss_pred HHHHHHHHHHHhhcc-----------cH----HHHhcC-cc--------ccccchHHHHHHHHHHHHHHhhhCCCcchHH
Confidence 877775544432111 11 121110 00 0000 0112444566666666545556666
Q ss_pred cccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 002413 385 SASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (926)
Q Consensus 385 s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l 426 (926)
..-.++-.|.+.|+++.+..+..++|++-..++...+|++++
T Consensus 216 ~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~ 257 (415)
T PRK09664 216 IICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESF 257 (415)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 666666568899999999999999999988888888888775
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.75 E-value=1.7e-05 Score=90.43 Aligned_cols=240 Identities=14% Similarity=0.161 Sum_probs=161.2
Q ss_pred hHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHH
Q 002413 148 LGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVA 227 (926)
Q Consensus 148 ~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~ 227 (926)
+|.|+.. ++-..|.+|....++..+++..+++.+.+.++|....+.|.+.+.-..+++.+|+.+|...+..|++..-..
T Consensus 33 IGAGmLf-LPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~l 111 (443)
T PRK13629 33 IGAGVLF-FPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPL 111 (443)
T ss_pred HhHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 3554322 344678889999999999999999999999999998733666778889999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002413 228 GAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVL 307 (926)
Q Consensus 228 ~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~l 307 (926)
...|..+..+.+.+++... +..+ ..+..+.++++.+++..+...|.|..-|+..++...++
T Consensus 112 l~aY~~~itn~l~sfl~~q------------------l~~~-~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 112 LWIYGVTITNTFMTFWENQ------------------LGFA-PLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred HHHHHHHHHHHHHHHHHhh------------------cCcC-CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7888877766665543211 0000 11234677888888889999999999999999999888
Q ss_pred HHHHHHHHhhhccCCCCCCCCccccccccccccccc-ccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcc
Q 002413 308 LSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFS-DYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSA 386 (926)
Q Consensus 308 l~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~-~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~ 386 (926)
+.++.+.+..+-.. +. +|+.. +....... +..+ .....+..+.+.+++|.=.-..+.++-
T Consensus 173 ~~l~~l~~~LiP~w-----------~~----~~L~~~~~~~~~~~---~~~~-~~~~l~~~iPv~v~SF~f~~iIssl~~ 233 (443)
T PRK13629 173 ASLVLISLSLIPYW-----------NS----AVIDQVDLGSLSLT---GHDG-ILVTVWLGISIMVFSFNFSPIVSSFVV 233 (443)
T ss_pred HHHHHHHHHHHHHc-----------CH----HHHhcCcccccccc---cccc-HHHHHHHHHHHHHHHHhccccchHHHH
Confidence 88776665543111 11 12110 00000000 0001 111234445555554432223333332
Q ss_pred c----c------hhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhh
Q 002413 387 S----L------KDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (926)
Q Consensus 387 E----~------knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l 426 (926)
. . ++..|.+-|+++.+..+..++|++-.+.+.+..+++++
T Consensus 234 y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l 283 (443)
T PRK13629 234 SKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNM 283 (443)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 2 2 33457888999999999999999999998888898876
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.64 E-value=3.7e-05 Score=85.92 Aligned_cols=267 Identities=15% Similarity=0.119 Sum_probs=182.2
Q ss_pred hhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHH
Q 002413 146 NILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (926)
Q Consensus 146 ~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~ 225 (926)
.++|++.....+..+..+| .+++..++++++..+.++.+..++.. +|. -..+.+..+.+|+.+|...+..|.+...
T Consensus 14 ~~~g~~~l~~p~~l~~~~~--d~Wi~~ll~~~~~l~~~~l~~~l~~~-~p~-~~l~~~~~~~~Gk~lg~ii~~~~~l~~l 89 (320)
T PF03845_consen 14 SIIGTGILFLPAILAEQAG--DAWISVLLGGLIGLLLALLIYYLLKR-FPG-KTLVEISEKLFGKWLGKIINLLYILYFL 89 (320)
T ss_pred HHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHH-CCC-CCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4668877777777777774 67788899999999999999999997 665 5678999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHh-cCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 002413 226 VAGAMYVLGAVETFLKA-VPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (926)
Q Consensus 226 ~~~a~~~~g~~e~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~ 304 (926)
...+...-.+++.+... +|+- +..++...+++++......|.+..+|...++..
T Consensus 90 ~~~~~~lr~~~~~i~~~~lp~T-------------------------P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~ 144 (320)
T PF03845_consen 90 LISALVLREFSEFIKTYLLPET-------------------------PIWVIILLFLLVAAYAARKGIEVIARVAEILFP 144 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCcC-------------------------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888765 3331 223556666777777888999999996666665
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhh
Q 002413 305 PVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNR 384 (926)
Q Consensus 305 ~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~ 384 (926)
+.++.++.+.+... .. ++ .+|+.|-+.. | ...++.......+.+.|++.....
T Consensus 145 ~~~i~~~~i~~~~~--~~---------~~----~~~l~P~~~~----------g--~~~i~~~~~~~~~~~~~~~~~l~~ 197 (320)
T PF03845_consen 145 IFLILLLLILLLSI--PN---------ID----WDNLLPVLES----------G--IKPILKGSLVISFPFGGIEILLFL 197 (320)
T ss_pred HHHHHHHHHHHHhc--cc---------CC----HHHeeCcccC----------C--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444333221 11 00 1444443321 1 233444455555678999999999
Q ss_pred cccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhhhh--c--cc---CchHHHHHHHHHHHHHHH
Q 002413 385 SASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLTA--T--IA---WPFPAVIHIGIILSTLGA 455 (926)
Q Consensus 385 s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~~~--~--~~---~~~~~ii~~~il~s~lss 455 (926)
..-+|||+ ...|....+.+.++++|.+..+...++...+..... |.... . .+ .-...++...-+.+.+..
T Consensus 198 ~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~ 276 (320)
T PF03845_consen 198 FPFVKDKK-KLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIK 276 (320)
T ss_pred HHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999975 468999999999999999988777777666544322 22111 1 11 011233444444555666
Q ss_pred HHHHhhhhhHHHHH
Q 002413 456 ALQSLTGAPRLLAA 469 (926)
Q Consensus 456 ~~s~l~~asR~l~a 469 (926)
....++++.+.+..
T Consensus 277 ~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 277 ISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777776643
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.44 E-value=0.00032 Score=80.73 Aligned_cols=244 Identities=16% Similarity=0.148 Sum_probs=144.9
Q ss_pred ccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCc-----hhhhHH
Q 002413 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGG-----PYYLIG 205 (926)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG-----~Y~~is 205 (926)
+.-+++..++- ++..+.|.+ .+.+++++.+.|....++..++.+++++-|+.-++..-.. .+.-.| .-....
T Consensus 36 ~~~s~~~a~~~-~i~~~~G~g-vLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~-~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 36 RGGSWWQAAFH-IINALIGAG-VLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEM-HEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred CCCcceehhhh-eehhhhhhh-hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCccCCChHHHHH
Confidence 33455555542 122244554 5667799999998887888888999999888778888776 666666 445666
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 002413 206 RALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILC 285 (926)
Q Consensus 206 r~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~ 285 (926)
+++|+..-..+++..++-....+..+.+..++.+...++...... ..+ + ......+++.+.+.+..
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~------------~~l-~-~~~f~iif~~i~~~~s~ 178 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND------------NSL-D-KQYFIIIFGLIVLPLSQ 178 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------------ccc-c-ceehhhhHHHHHHHHHH
Confidence 799988866778887777666666777777788877776532100 000 0 01111222333322222
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCCCCcccccccccccccccccccCCCCCCCCCCCCchhHH
Q 002413 286 FIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKD-DPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSF 364 (926)
Q Consensus 286 ~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~-~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f 364 (926)
+=|+-..++..-+..++.. ..+.+.+.+|.....+. .+..+ +... .+ ...
T Consensus 179 lp~~~~l~~~S~~~avmS~--~~a~~~~~~g~~~g~~~~~~~~~----------------~~~~------~~-----~~~ 229 (437)
T KOG1303|consen 179 LPNFHSLSYLSLVGAVMST--LYAVILIVLGIADGVGFCAPSGG----------------YLDL------GT-----IPT 229 (437)
T ss_pred CCCcchhHHHHHHHHHHHH--HHHHHHHHHhhccccccCCcccC----------------cccC------CC-----Ccc
Confidence 2233333333322222221 11122233333221111 00000 0000 00 111
Q ss_pred -HHHHHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002413 365 -NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA 421 (926)
Q Consensus 365 -~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v 421 (926)
+.+++...|+|.|--...++=.++|+|++ .+|+.+.+..+++++|+.+++.-....
T Consensus 230 ~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aF 286 (437)
T KOG1303|consen 230 VFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAF 286 (437)
T ss_pred hhhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 46788889999999888999999999998 999999999999999999877544443
No 53
>PTZ00206 amino acid transporter; Provisional
Probab=98.42 E-value=0.00019 Score=84.42 Aligned_cols=244 Identities=9% Similarity=0.058 Sum_probs=130.1
Q ss_pred hhh-hhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHH
Q 002413 144 LQN-ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFL 222 (926)
Q Consensus 144 ~~~-i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l 222 (926)
+.| ++|+++. .++++..++|....++..++.++++..+..-+.+.+.. +..-.........+||.....+.+..++
T Consensus 69 L~~~~iGaGIL-sLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~--~~~~sY~~la~~~~G~~g~~~v~~~~~~ 145 (467)
T PTZ00206 69 IASSTVGAGIV-GLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK--TNIRTYEGVARVLLGPWGSYYVAATRAF 145 (467)
T ss_pred HHHHHHhHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHhCHHHHHHHHHHHHH
Confidence 444 7788754 47778888998877777777777776666556655543 3333344455557899999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHH
Q 002413 223 GNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFI-VFGGVKIINRVAPT 301 (926)
Q Consensus 223 ~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~i-n~~Gvk~~~~~~~~ 301 (926)
.....+..|.+..++.+...++..... + .+.....+. .++.++.++++.-+ -...++..+.+..+
T Consensus 146 ~~~G~cv~YlIiigd~l~~~l~~~~~~-~------------~~~~~~~~r-~~~~~i~~~i~lPLs~~r~i~~L~~~S~i 211 (467)
T PTZ00206 146 HGFSACVAYVISVGDILSATLKGTNAP-D------------FLKQKSGNR-LLTSLMWLCFMLPLVIPRHIDSLRYVSTI 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-c------------hhhhccCcE-EeeeehhhhHhhhcccccchHHHHHHHHH
Confidence 777778888888888777666432110 0 000000000 01111111111111 12233333333222
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCCccccccccc-ccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhh
Q 002413 302 FLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTF-KDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMA 380 (926)
Q Consensus 302 ~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~-~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~ 380 (926)
..+..+..++.+++-.+. .+.+ .+....+.... ..++. .|. ....+..+++++.++|.+.-.
T Consensus 212 ~~~~i~~~vi~ivi~~~~--~~~~-~~~~~~~~~~~~~~~~~-~f~-------------~~~~~~~algi~~faF~~h~~ 274 (467)
T PTZ00206 212 AVSFMVYLVIVIVVHSCM--NGLP-ENIKNVSVGKDDNAEII-LFN-------------SGNRAIEGLGVFIFAYVFQIT 274 (467)
T ss_pred HHHHHHHHHhhhhhhhhc--ccCc-ccccccccCCCCCCceE-Eec-------------CchHHHhhhhHHHhhhhhhhh
Confidence 211111111111111110 0000 00000000000 00000 010 012466788999999999999
Q ss_pred Hhhhcccchhhc-cchhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002413 381 GSNRSASLKDTQ-RSIPIGTLAATLTTTALYVISVLLFGAAA 421 (926)
Q Consensus 381 ~a~~s~E~knP~-rsIP~a~~~ai~~~~v~Yil~~~~~~~~v 421 (926)
....-.|+|||. ++..+.+..++.+.+++|.+..++-....
T Consensus 275 ~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~f 316 (467)
T PTZ00206 275 AYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDF 316 (467)
T ss_pred hHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999874 67888888999999999998776544443
No 54
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.38 E-value=7.2e-05 Score=84.90 Aligned_cols=294 Identities=18% Similarity=0.168 Sum_probs=154.7
Q ss_pred cCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------
Q 002413 122 TYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM------ 195 (926)
Q Consensus 122 ~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p------ 195 (926)
++++.|.....++.-.|+. ||.|+. -++..+||+..+|+|+.+.+.+ .+.++=+-|+-.|..
T Consensus 18 ~iS~fqA~~~ala~~vG~G-----NI~GVa------~AI~~GGPGAiFWMWi~a~~Gm-atk~~E~~La~~yR~~~~~G~ 85 (416)
T PF01235_consen 18 GISPFQALCTALAGTVGTG-----NIAGVA------TAIAIGGPGAIFWMWISALLGM-ATKYAEVTLAQKYREKDEDGE 85 (416)
T ss_pred CcChHHHHHHHHHhccCcc-----hHHHHH------HHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHheEECCCCC
Confidence 3445555556666666643 455652 2445679999999998776543 333333334444332
Q ss_pred ccCchhhhHHHHhCCchhHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCC
Q 002413 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAG--A---MYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSL 270 (926)
Q Consensus 196 ~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~--a---~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 270 (926)
-.||..||++|.+|.++- ++.|.+..+++. . ...-..++.+...++
T Consensus 86 ~~GGP~yyi~~gl~~k~l---a~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-------------------------- 136 (416)
T PF01235_consen 86 YRGGPMYYIEKGLGSKWL---AILFAIFLIIAFGIGFNMVQANSIADALSSAFG-------------------------- 136 (416)
T ss_pred EeecHHHHHHHHhccchH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc--------------------------
Confidence 348999999999997752 333332211110 0 111111122221111
Q ss_pred chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCC
Q 002413 271 HDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNN 350 (926)
Q Consensus 271 ~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~ 350 (926)
.+..+.++++.+++.++.+-|+|..+++...+.=+..+..+...+.++....++ . ...+..=+...|++...
T Consensus 137 i~~~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~----i----p~~~~~If~~AF~~~aa 208 (416)
T PF01235_consen 137 IPPWITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQ----I----PAAFSLIFSSAFTPKAA 208 (416)
T ss_pred ccHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----H----HHHHHHHHHHHcCCccc
Confidence 122356667777777778889998887765543322222222222222111111 0 01111223333433221
Q ss_pred CCCCCCCCCchhH--H----HHHHHHHhh---hhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 002413 351 AGIPDPNGAVDWS--F----NALVGLFFP---AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA 421 (926)
Q Consensus 351 ~g~~~~~g~~~~~--f----~~~~~i~f~---a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v 421 (926)
.| | +.+ + ..++.=..| +=.|....++.+.|.++|.|.==.+++-.++-+.++-.++.+++...-
T Consensus 209 ~G-----G--~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG 281 (416)
T PF01235_consen 209 FG-----G--FAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTG 281 (416)
T ss_pred hh-----h--HHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccC
Confidence 11 1 111 1 111111112 446777788888999999988777777766666665555555444433
Q ss_pred Chh---hhccchh----hhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002413 422 TRE---ELLTDRL----LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIA 471 (926)
Q Consensus 422 ~~~---~l~~~~~----~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alA 471 (926)
.+. .+....+ +....+...++++.+++++-.+++.+++.+.+-+.+.-+-
T Consensus 282 ~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 282 VWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred CCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 221 1111122 2223444567889999999999999999999998887665
No 55
>PLN03074 auxin influx permease; Provisional
Probab=98.28 E-value=0.00089 Score=78.61 Aligned_cols=221 Identities=12% Similarity=0.050 Sum_probs=112.8
Q ss_pred chhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHH----HHHhcCccccCch--------hhhHHHHhCC
Q 002413 143 CLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLS----AIATNGAMKGGGP--------YYLIGRALGP 210 (926)
Q Consensus 143 ~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~a----Elat~~~p~~GG~--------Y~~isr~lGp 210 (926)
...+.+|+++. .++++..++|....++..++.++++.-++.-++ |...+ .+..+-. +....+.+||
T Consensus 55 l~~~~vG~GIL-aLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r-~~~~~~~~~~~~~~~~e~~~~~~G~ 132 (473)
T PLN03074 55 CASNQVAQVLL-TLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRAR-KEREKVDFKNHVIQWFEVLDGLLGP 132 (473)
T ss_pred HHHHHHhHHHH-hHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcCCCchhHHHHHHHHHHHHhcCh
Confidence 34556787754 488889999988777766666666555555444 45555 5553321 2234457899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhh
Q 002413 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (926)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~ 290 (926)
.++.......++.....+..+.+..++.+....+.. +...| ..+++.+.+.+..+-+
T Consensus 133 ~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~--------------------~~~~~-~~i~~~v~~~~~~i~s-- 189 (473)
T PLN03074 133 YWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--------------------DKRTW-TYIFGACCATTVFIPS-- 189 (473)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc--------------------CCCeE-EeehHHHHHHHHHccC--
Confidence 887777554444444444444444333222211100 00011 1122222222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHH
Q 002413 291 GVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGL 370 (926)
Q Consensus 291 Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i 370 (926)
.+....+..+...+.+...+.++++.+.... . . + +... .+ ..+..++.+++.
T Consensus 190 -l~~l~~~S~ig~~~tl~~av~i~i~~i~~~~-~--~---~-------------~~~~------~~--~~~~~~f~~~~~ 241 (473)
T PLN03074 190 -FHNYRIWSFLGLLMTTYTAWYMTIAALSHGQ-V--E---G-------------VKHS------GP--TKLVLYFTGATN 241 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--C---C-------------CCCC------Cc--hhHHHHHHHHHH
Confidence 3333333222222212221222222221110 0 0 0 0000 00 013345556666
Q ss_pred HhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 002413 371 FFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLF 417 (926)
Q Consensus 371 ~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~ 417 (926)
..++|.|.-....+-.|+|||++ .++....+....+++|+...++.
T Consensus 242 i~faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~g 287 (473)
T PLN03074 242 ILYTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPSAAAV 287 (473)
T ss_pred HHHHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHHHHee
Confidence 78899999999999999999974 88887777777777777765543
No 56
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.00 E-value=0.0042 Score=70.11 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=152.9
Q ss_pred cCCCCCCCcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------
Q 002413 122 TYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM------ 195 (926)
Q Consensus 122 ~l~~~~~~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p------ 195 (926)
+.++.+.....++.-.|+. ||.|+. -++..+||+..+|+|+.+.+- ..+.++=+-++..|..
T Consensus 62 ~vS~FqAl~~sla~~VGtG-----NIaGVA------tAI~~GGPGAvFWMWi~Al~G-mat~f~E~~La~~Yr~kd~~G~ 129 (452)
T COG1115 62 GVSSFQALMTSLAARVGTG-----NIAGVA------TAIALGGPGAVFWMWIVALFG-MATKFAESTLAQKYRVKDKDGE 129 (452)
T ss_pred CcChHHHHHHHHHhccCcc-----hHHHHH------HHHHcCCCccHHHHHHHHHHH-HHHHHHHHHHHhheeEeCCCCC
Confidence 3444555556666655543 555652 234556999999999887654 3444444446665443
Q ss_pred ccCchhhhHHHHhCCch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchh
Q 002413 196 KGGGPYYLIGRALGPEV-GVSIGLCFFLGNA-VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDL 273 (926)
Q Consensus 196 ~~GG~Y~~isr~lGp~~-Gf~~Gw~~~l~~~-~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 273 (926)
-.||.-||+.+.+|-+| |...+....++.. +......-..++.+.+.++ .+.
T Consensus 130 ~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------------------------~~~ 183 (452)
T COG1115 130 YRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------------------------IPP 183 (452)
T ss_pred CcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------------------------CcH
Confidence 23788899999998443 3333322111111 1111112222333333332 123
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCC
Q 002413 274 QIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGI 353 (926)
Q Consensus 274 ~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~ 353 (926)
.+.++++.++..++-+-|+|-.+++.....=+..+.-++..+.++....+. ..+ .+..-+.+.|......|
T Consensus 184 ~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~----iP~----~i~~If~sAF~~~aa~G- 254 (452)
T COG1115 184 LVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQ----IPA----VIALIFSSAFGPKAAAG- 254 (452)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----hHH----HHHHHHHhcCCchhhhh-
Confidence 467777777778888889998777664432211111111111111111100 000 11111222232221111
Q ss_pred CCCCCCc-hhHHHHHHHHHhh---hhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhc--
Q 002413 354 PDPNGAV-DWSFNALVGLFFP---AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL-- 427 (926)
Q Consensus 354 ~~~~g~~-~~~f~~~~~i~f~---a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~-- 427 (926)
+.-|.. ...+...+.=..| +=.|....++.+.++++|.|.==..++..++=+.++--.+.+++...-.++...
T Consensus 255 -G~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~ 333 (452)
T COG1115 255 -GFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGL 333 (452)
T ss_pred -hhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCC
Confidence 000100 0011111111111 334555566677888999887655555555545555555555444444332211
Q ss_pred cc-hh----hhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002413 428 TD-RL----LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIA 471 (926)
Q Consensus 428 ~~-~~----~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alA 471 (926)
+. .+ .....+....+++.+++++-.+++.+++.+.+-|.+.-+.
T Consensus 334 ~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 334 SGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred chHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 22 2334555678999999999999999999999999887665
No 57
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=97.95 E-value=5.2e-07 Score=104.30 Aligned_cols=347 Identities=13% Similarity=0.083 Sum_probs=176.8
Q ss_pred hhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---ccCchhhhHHHHhCCchhHHHHHHHHHH
Q 002413 147 ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM---KGGGPYYLIGRALGPEVGVSIGLCFFLG 223 (926)
Q Consensus 147 i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p---~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~ 223 (926)
++|+++ +.++++..++|....++..++.++++..+..-+.+.+.. .+ +.-..-....+.+||..+..+....++.
T Consensus 16 ~iG~G~-L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~-~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~ 93 (409)
T PF01490_consen 16 IIGAGI-LSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANA-MPNGTGRRSYGDLARRAFGPKGKWFVDICIFIY 93 (409)
T ss_pred HHhHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccc-cccccccccccccccccccccccccccchheec
Confidence 778774 457888889999888888888888888888888888875 54 3333334556789999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 002413 224 NAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFL 303 (926)
Q Consensus 224 ~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~ 303 (926)
....+..|.+..++.+...++... .........+.++..+++..+++. |-...+..+..
T Consensus 94 ~~g~~v~y~i~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~i~~~i~~pls~~--~~l~~l~~~s~ 152 (409)
T PF01490_consen 94 LFGSCVAYLIIIGDSLSSLIPSFF-------------------GDLFISRYVWIIIFALIVLPLSFL--KNLKSLRYLSI 152 (409)
T ss_pred cccccceeEEEeeeeeeccccccc-------------------cccccccccccccccccccccccc--chhhHHHHHhh
Confidence 665555555555555555444310 000111112222222222222222 22222222211
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhh
Q 002413 304 IPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSN 383 (926)
Q Consensus 304 ~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~ 383 (926)
+..+..+..+.+..+.........+ .+.... . ........++...++++.++|.+......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~--------~~~~~~~~~~~~~~~i~~faf~~~~~~~~ 213 (409)
T PF01490_consen 153 LGLFSIFYFIVIVVIYIISYGPGEP----------SGVPSP-P--------VWPFISFSGFFSAFGIIIFAFSCHPNLPP 213 (409)
T ss_pred hhhhccceeeeeecceeeeeecccc----------cccccc-c--------ccccchhhHHHHhhhhhhhhhhcccccce
Confidence 1111111101111111100000000 000000 0 00011245688889999999999999999
Q ss_pred hcccchhhcc--chhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhhhhcccC-chHHHHHHHHHHHHHHHHHHHh
Q 002413 384 RSASLKDTQR--SIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAW-PFPAVIHIGIILSTLGAALQSL 460 (926)
Q Consensus 384 ~s~E~knP~r--sIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~-~~~~ii~~~il~s~lss~~s~l 460 (926)
+..|+|+|++ ++-++...++.+++++|++..+........+ . ++......... +...+..+...++.+.+..-.+
T Consensus 214 i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~-~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~ 291 (409)
T PF01490_consen 214 IQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDS-V-QGNILLNLPNDDVLIIIARILLVISLLLSYPLQL 291 (409)
T ss_pred eeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeee-e-cchhhhcCCCcccccccccccchhhhhhcccccc
Confidence 9999999885 5679999999999999999777554443221 1 11111111111 1223334444444444433344
Q ss_pred hhhhHHHHHHHhCC-----CCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHH--HHHHHHHHHHHH
Q 002413 461 TGAPRLLAAIANDD-----ILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFF--LLCYSGVNLSCF 533 (926)
Q Consensus 461 ~~asR~l~alArDg-----~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~--ll~y~~i~la~~ 533 (926)
+.+.+.+...-... ..++ ... .++...-...+++..+..++.+.+.+++.+.++.+... .++|.+.++.++
T Consensus 292 ~p~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~ 369 (409)
T PF01490_consen 292 FPARNSLENLLFKRAASSRDSPK-NTP-SSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYL 369 (409)
T ss_pred chhHhhhhhheeccccccccccc-ccc-ccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHH
Confidence 44444444443321 1110 000 00000011111122222223344567777777765443 577777777777
Q ss_pred HHhhcC
Q 002413 534 LLDLLD 539 (926)
Q Consensus 534 ~~~~~~ 539 (926)
..++.+
T Consensus 370 ~~~~~~ 375 (409)
T PF01490_consen 370 KLFKRK 375 (409)
T ss_pred Hhhccc
Confidence 766543
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.84 E-value=0.012 Score=67.55 Aligned_cols=272 Identities=15% Similarity=0.171 Sum_probs=141.5
Q ss_pred hhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------ccCchhhhHHHHhC-CchhHHHHHHHHHHH-HHHH
Q 002413 157 TWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM------KGGGPYYLIGRALG-PEVGVSIGLCFFLGN-AVAG 228 (926)
Q Consensus 157 g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p------~~GG~Y~~isr~lG-p~~Gf~~Gw~~~l~~-~~~~ 228 (926)
.-++..+||+..+|+|+.+.+.+ .+..+-+-++..+.- -.||.-+|+.+.++ +.+|...+.. ++.+ .+..
T Consensus 70 a~Ai~~GGpGAvFWMWI~allGm-~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~ 147 (425)
T TIGR00835 70 ATAIAIGGPGAVFWMWVTAFIGM-ATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGN 147 (425)
T ss_pred HHHHHhcCCCchHHHHHHHHHHH-HHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHHHH-HHHHHhhhH
Confidence 44566779999898887765433 344444444544331 12455588999877 5556555544 3333 2222
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002413 229 AMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLL 308 (926)
Q Consensus 229 a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll 308 (926)
....-..++.+...++ .+..+.++++.++...+.+-|+|..+++...+.-+..+
T Consensus 148 ~~Q~nsi~~~~~~~~~--------------------------~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~ 201 (425)
T TIGR00835 148 MVQANAIASALSNAFN--------------------------VPKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMAL 201 (425)
T ss_pred HHHHHHHHHHHHHHcC--------------------------CcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 3333333444442221 11235555666666666666999988887766554444
Q ss_pred HHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhH--H----HHHHHHHhh---hhhhhh
Q 002413 309 SIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWS--F----NALVGLFFP---AVTGIM 379 (926)
Q Consensus 309 ~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~--f----~~~~~i~f~---a~tG~e 379 (926)
..+...+.+......+ .. ..+..=+...|....-.| | +.+ + ..++.=..| +=.|..
T Consensus 202 ~Y~~~~l~ii~~n~~~----lp----~~~~~If~~AF~~~a~~G-----G--~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa 266 (425)
T TIGR00835 202 LYVIMALYIIIMNIEQ----LP----AVISLIFRSAFGGDAAAG-----G--FAGSTVAQAIMIGVKRGLFSNEAGMGSA 266 (425)
T ss_pred HHHHHHHHHHHHhHHH----HH----HHHHHHHHHhCCchhhHh-----H--HHHHHHHHHHHHhhHHHHhccccccCcH
Confidence 3332222222111100 00 011111222232221111 1 111 1 011111111 446777
Q ss_pred hHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChh---hhccchh----hhhcccCchHHHHHHHHHHHH
Q 002413 380 AGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATRE---ELLTDRL----LTATIAWPFPAVIHIGIILST 452 (926)
Q Consensus 380 ~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~---~l~~~~~----~~~~~~~~~~~ii~~~il~s~ 452 (926)
..++.+.++++|.|.==.+++-.++=+.++-.++.+++.....++ .+....+ .....+..+++++.+.+++-.
T Consensus 267 ~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFa 346 (425)
T TIGR00835 267 PIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFA 346 (425)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 778888999999987766666666655555555444444333222 1111111 122234346789999999999
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 002413 453 LGAALQSLTGAPRLLAAIA 471 (926)
Q Consensus 453 lss~~s~l~~asR~l~alA 471 (926)
+++.+++.+.+-+.+.-+-
T Consensus 347 ftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 347 FSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999988877663
No 59
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.84 E-value=0.0085 Score=68.33 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=102.5
Q ss_pred hHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHH
Q 002413 203 LIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTI 282 (926)
Q Consensus 203 ~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~ 282 (926)
| -|.+||...+++-....+.+...++.|.+-.++-+.+.+... ....++.+++..+.+.
T Consensus 130 ~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------------------~~~~~s~~~~i~~~~~ 188 (449)
T KOG1304|consen 130 W-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------------------SPGVLSVRLYILIQLP 188 (449)
T ss_pred H-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------------------CCCCccHHHHHHHHHH
Confidence 5 778999999999988888888888888877777777665421 1234566777777777
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCch
Q 002413 283 ILCFIVFG-GVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVD 361 (926)
Q Consensus 283 l~~~in~~-Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~ 361 (926)
.+..+|++ -.|+.+-+..+..++.++++++++.=.+....+ . ++ .+.+ .+ .
T Consensus 189 ~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~--~------------~~-~~~~-----------~~--~ 240 (449)
T KOG1304|consen 189 PLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPP--T------------SD-LPAV-----------TG--W 240 (449)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCC--c------------cc-cccc-----------cc--h
Confidence 77777754 344444444443443344433332211100000 0 00 0001 11 1
Q ss_pred hHHHHHHHHHhhhhhhhhhHhhhcccchhhccchh---hHHHHHHHHHHHHHHHHHHH
Q 002413 362 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIP---IGTLAATLTTTALYVISVLL 416 (926)
Q Consensus 362 ~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~rsIP---~a~~~ai~~~~v~Yil~~~~ 416 (926)
.++-..++.+.|||-|+-.+--+=+++|+|+ +.| ...-.++.+++++|+..-++
T Consensus 241 ~~~~lf~GtaifafEGig~VLPlEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~ 297 (449)
T KOG1304|consen 241 SGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFF 297 (449)
T ss_pred hhhHHHHHHHHHHhccceEEEehhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHH
Confidence 2344457888889999877777788999997 455 88888899999999886554
No 60
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.66 E-value=0.016 Score=66.39 Aligned_cols=233 Identities=16% Similarity=0.219 Sum_probs=119.9
Q ss_pred ccCchhhhHHHHhCCchhHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHhcCCCCccchhhhccCCCCCCCCCCCCCCch
Q 002413 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGN--AVAGAMYVLGAVET-FLKAVPAAGMFRETITKVNGTATPEPIQSPSLHD 272 (926)
Q Consensus 196 ~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~--~~~~a~~~~g~~e~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 272 (926)
+.||.+.=..+..||.+|.......+++- ..+.+=.+...-|. +...++. ...+.
T Consensus 60 ~~~~~~~~l~~~v~~~f~~if~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~----------------------~~~~~ 117 (427)
T PF05525_consen 60 KSGGGIEDLASRVGPKFALIFTILIYLSIGPLFAIPRTAAVSFEMGIAPFFPE----------------------NSNIS 117 (427)
T ss_pred hcCCCHHHHhcccCcHHHHHHHHHHHHHHHhcccCcchhhhhHHHhhhccCCc----------------------ccccc
Confidence 44656666667799999988877655443 22222111111121 1111221 12334
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCC
Q 002413 273 LQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNA 351 (926)
Q Consensus 273 ~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~ 351 (926)
..++.+++..+...+.+..-|..-++..+++=+.++.++.+++ +++ .+.+........+....+.+-+...|+.
T Consensus 118 ~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~-~p~g~~~~~~~~y~~~~f~~Gf~eGY~T---- 192 (427)
T PF05525_consen 118 LLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIF-SPIGPPQAPSGAYASNPFFKGFLEGYQT---- 192 (427)
T ss_pred hhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCccccchhhhhhHHHHHHHHHHhh----
Confidence 4577888888888888888888888888887777777775555 444 3332211110011111111111111111
Q ss_pred CCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcc---cchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccCh-hhhc
Q 002413 352 GIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSA---SLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATR-EELL 427 (926)
Q Consensus 352 g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~---E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~-~~l~ 427 (926)
++ +++-. .|..+-..+-... |-|+-.|..-++-+.+.....++|.....+-...... ....
T Consensus 193 ----------MD---~laal--~Fg~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~ 257 (427)
T PF05525_consen 193 ----------MD---ALAAL--AFGIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDI 257 (427)
T ss_pred ----------hh---HHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCC
Confidence 11 12222 2233222222222 2333344555555566666666676655533322221 1111
Q ss_pred c-c----hhhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002413 428 T-D----RLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 470 (926)
Q Consensus 428 ~-~----~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~al 470 (926)
+ . .......|..+..++.+.++++|+.++.+-+.+++..+..+
T Consensus 258 ~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~ 305 (427)
T PF05525_consen 258 NGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL 305 (427)
T ss_pred CHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 12233466666788888999999999999999888876554
No 61
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.57 E-value=0.047 Score=62.08 Aligned_cols=249 Identities=14% Similarity=0.149 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 002413 168 SLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAG 247 (926)
Q Consensus 168 ~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~ 247 (926)
.++..+++.++.++.-...+.++. ..+-|...-+.+.+|+.++...+....++.......+..+.+..+..+++ .
T Consensus 15 Llw~lll~~~~~~~~q~~~~R~~~---~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-~- 89 (358)
T PF01566_consen 15 LLWVLLLSNLLKYVFQEMAARLGI---VTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-I- 89 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-
Confidence 344445555554444333333333 24455666667788888888887777777776666666666555543331 1
Q ss_pred ccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 002413 248 MFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAP 327 (926)
Q Consensus 248 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~ 327 (926)
+..+++.+..+++.++-++..+.|.++|.++.++..+..+++++..+...++.
T Consensus 90 ------------------------~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~--- 142 (358)
T PF01566_consen 90 ------------------------PLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDW--- 142 (358)
T ss_pred ------------------------CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhH---
Confidence 11233333333333333323556888898888877777666665554433211
Q ss_pred Ccccccccccccccc-cccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhh---ccc------------chhh
Q 002413 328 GITGLKLKTFKDNWF-SDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNR---SAS------------LKDT 391 (926)
Q Consensus 328 ~~~g~~~~~~~~n~~-~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~---s~E------------~knP 391 (926)
....+.+. |.... .+ .+..++++.-......+...+- .++ +|.-
T Consensus 143 -------~~~~~g~~~P~~p~---------~~----~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~ 202 (358)
T PF01566_consen 143 -------GEVARGLVVPSIPG---------PG----SLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYA 202 (358)
T ss_pred -------HHHhhhccCCCCcc---------hh----HHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHH
Confidence 11112222 22111 01 2222233332222222222221 111 2222
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-----hhhhhccc-CchHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002413 392 QRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-----RLLTATIA-WPFPAVIHIGIILSTLGAALQSLTGAPR 465 (926)
Q Consensus 392 ~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-----~~~~~~~~-~~~~~ii~~~il~s~lss~~s~l~~asR 465 (926)
+++.=.++..+.+++..+++..+..+. +.+....+ ..+....| .....++.++++.+.+++......+.++
T Consensus 203 ~~D~~~g~~~~~li~~ai~i~~A~~l~---~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~ 279 (358)
T PF01566_consen 203 RFDTIIGMIVSFLINVAILIVAAAVLY---PGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAY 279 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccce
Confidence 233333333333333333333222221 11110111 22334566 4667889999999999999999999988
Q ss_pred HHHHHH
Q 002413 466 LLAAIA 471 (926)
Q Consensus 466 ~l~alA 471 (926)
.+...-
T Consensus 280 ~~~~~~ 285 (358)
T PF01566_consen 280 VLADFL 285 (358)
T ss_pred ehHhhh
Confidence 876554
No 62
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.40 E-value=0.086 Score=59.16 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=39.5
Q ss_pred CchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 002413 270 LHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLAS 321 (926)
Q Consensus 270 ~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~ 321 (926)
.....++.+++..+..++.+..-|..-++..+++=++++.++.+++..+..+
T Consensus 117 ~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p 168 (431)
T COG1114 117 LPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPP 168 (431)
T ss_pred chHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC
Confidence 3445678888888889999999999999988888887777776665444433
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.42 Score=55.00 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHH-HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002413 166 GDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVP 244 (926)
Q Consensus 166 ~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr-~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~ 244 (926)
..++++.+++.++-...+..+++++. +.|=.-...+| .+|..-+.....+.++.++-..+.....+++....
T Consensus 52 ~~si~aillG~llG~i~~A~~s~~Ga----~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~--- 124 (442)
T COG1457 52 GQSLLAILLGNLLGGIFMAYFSYQGA----RTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS--- 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----ccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc---
Confidence 34555555555554444444454443 34444444445 56665555444444444433333333333332110
Q ss_pred CCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002413 245 AAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF 314 (926)
Q Consensus 245 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~ii 314 (926)
....+..++.+++.+++++..++|.|...+++.+.....++..+..+
T Consensus 125 -----------------------~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~ 171 (442)
T COG1457 125 -----------------------GTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLL 171 (442)
T ss_pred -----------------------CCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223335556666678888899999999999888776655554333
No 64
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.08 E-value=0.67 Score=54.05 Aligned_cols=58 Identities=12% Similarity=-0.035 Sum_probs=36.2
Q ss_pred HHHHHHHhcC-ccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 184 ISLSAIATNG-AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (926)
Q Consensus 184 ls~aElat~~-~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~ 241 (926)
..+-|++.+. ...+=|.-..+++.+|+.+++.......+++......+..|.+-.+..
T Consensus 79 ~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~l 137 (439)
T PRK00701 79 MLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKL 137 (439)
T ss_pred HHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555542 223337888888889988877766666666666666666666554443
No 65
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.08 E-value=0.23 Score=57.09 Aligned_cols=177 Identities=15% Similarity=0.190 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCccc-ccccccccccccccccCCC
Q 002413 273 LQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITG-LKLKTFKDNWFSDYQKTNN 350 (926)
Q Consensus 273 ~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g-~~~~~~~~n~~~~~~~~~~ 350 (926)
..++.+++..+..++.+..-|..-++..+++=+.++.++.+++ +++. +.+.... -++ +..+.+.+-+...|+
T Consensus 122 ~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~-p~g~~~~-~~~~y~~~~f~~Gf~eGY~---- 195 (439)
T PRK15433 122 LFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVW-PAGSIST-ATEAYQNAAFSNGFVNGYL---- 195 (439)
T ss_pred HHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-cchhhhhhhHHHHHHhhHH----
Confidence 3467778888888888888888888888887777777765554 5543 3222100 001 111111111111111
Q ss_pred CCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhc---cchhhHHHHHHHHHHHHHHHHHHHHHhccC-hhhh
Q 002413 351 AGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQ---RSIPIGTLAATLTTTALYVISVLLFGAAAT-REEL 426 (926)
Q Consensus 351 ~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~---rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~-~~~l 426 (926)
-+.+++-. +|..+-..+-.....+|++ |..=++-+.+.....++|.....+-..... .++.
T Consensus 196 -------------TMDalaal--~Fg~iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~ 260 (439)
T PRK15433 196 -------------TMDTLGAM--VFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQS 260 (439)
T ss_pred -------------HHHHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCC
Confidence 11222222 2233222233333344433 334445555555666667665554332222 1111
Q ss_pred ccc-h----hhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002413 427 LTD-R----LLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 470 (926)
Q Consensus 427 ~~~-~----~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~al 470 (926)
.+. . ......+..+..+..+.++++|+.++.+.+++.++-+..+
T Consensus 261 ~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 261 ANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred CcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 011 1 2233456667788888999999999999999998876543
No 66
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.93 E-value=0.44 Score=54.40 Aligned_cols=307 Identities=19% Similarity=0.171 Sum_probs=143.1
Q ss_pred ccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC-Cc
Q 002413 133 LGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG-PE 211 (926)
Q Consensus 133 lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG-p~ 211 (926)
.++-.|..+.++.+-+|-+=.-|+++.+++-|-+.=++.|++.. +..-.-+-++|.+- |.- +++.-.=+-|.+. +.
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~-l~~GiPlli~Ef~i-Gr~-~~~~~~~a~~~l~~~~ 84 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFL-LLVGIPLLLAEFAI-GRR-GRKNAVGAFRKLAPKK 84 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHH-HHHhHHHHHHHHHh-hhh-cCCChhHHHHHhccCc
Confidence 44444555555666667777888898888776444444444443 33344456788886 332 2222222333333 35
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhc-CCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002413 212 VGVSIGLCFFLGNAVAGAMYVLGAV---ETFLKAV-PAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFI 287 (926)
Q Consensus 212 ~Gf~~Gw~~~l~~~~~~a~~~~g~~---e~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~i 287 (926)
..-.+||.-.++..+..+.|.+-.+ .|+...+ +..+.-++...... .+. ..+.+....+-++++++..++
T Consensus 85 ~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f----~~~--~~~~~~~~~~~~~~~~lt~~i 158 (439)
T COG0733 85 KWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLF----GQT--ISNPGLAVIFHLLFLVLTALI 158 (439)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHH----HHH--hcCchHHHHHHHHHHHHHHHH
Confidence 6666777765555555555544221 2221111 11100000000000 000 000122223334555566666
Q ss_pred HhhhhHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHH
Q 002413 288 VFGGVKI-INRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNA 366 (926)
Q Consensus 288 n~~Gvk~-~~~~~~~~~~~~ll~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~ 366 (926)
...|++- .-|...++.=...+.++.+.+=.+..+ +. ..|+ .-.+.|+|..-. ....+..
T Consensus 159 v~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLp--GA---~~G~-----~f~l~PD~s~l~----------~~~v~~~ 218 (439)
T COG0733 159 VSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLP--GA---MEGL-----KFLFKPDFSKLT----------DPKVWLA 218 (439)
T ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCc--cH---HHHH-----HHHhcCCHHHcC----------chhhHHH
Confidence 6778775 444444443322222222222111111 11 1121 223555554321 0234778
Q ss_pred HHHHHhhhh-hhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc---Chhhhccch------hhhhcc
Q 002413 367 LVGLFFPAV-TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA---TREELLTDR------LLTATI 436 (926)
Q Consensus 367 ~~~i~f~a~-tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v---~~~~l~~~~------~~~~~~ 436 (926)
++++.||+. .|+-.....|.=++ .+.++|+......+..+.+-++.-+++...+ ..+ ....+ +.....
T Consensus 219 AlGQ~FFsLSlG~g~mitYsSYL~-k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-~~~GpgL~Fi~LP~if~ 296 (439)
T COG0733 219 ALGQAFFSLSLGFGIMITYSSYLS-KKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD-ASQGPGLVFIVLPAVFN 296 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeeehhHHHHHHH
Confidence 899999865 45555455555444 4678888888777776666655433222211 111 11111 111111
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 002413 437 AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 470 (926)
Q Consensus 437 ~~~~~~ii~~~il~s~lss~~s~l~~asR~l~al 470 (926)
.-|...++.+..+++.+-+++++..+-=-.+-+.
T Consensus 297 ~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~ 330 (439)
T COG0733 297 QMPLGTLFGILFFLLLLFAALTSAISMLEVLVAA 330 (439)
T ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235566666666666666666665554444443
No 67
>PRK11017 codB cytosine permease; Provisional
Probab=96.92 E-value=1.3 Score=51.34 Aligned_cols=119 Identities=15% Similarity=0.067 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHH-HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 163 GGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (926)
Q Consensus 163 aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr-~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~ 241 (926)
-+..++++..+++.++......-.+-.+ ++.|=.+...+| .+|..-+...+.+..+..+.-.+......+..+..
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G----~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~ 114 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIG----AKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVK 114 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3566777777777665544333333333 345555555555 67876555555544333332223232222233322
Q ss_pred hcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002413 242 AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF 311 (926)
Q Consensus 242 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~ 311 (926)
.++. +.....+++.++.+.+.++|.|...+++.+...+.++.++
T Consensus 115 ~~~~--------------------------~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~ 158 (404)
T PRK11017 115 ATGL--------------------------DINLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGG 158 (404)
T ss_pred HhCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2210 0012333444555666778888888888876655544333
No 68
>PRK11375 allantoin permease; Provisional
Probab=96.83 E-value=1.7 Score=51.50 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchh-hhHHHHhCCchhHHHHHHHH-HHHHHHHHHHHHHHHHH---
Q 002413 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPY-YLIGRALGPEVGVSIGLCFF-LGNAVAGAMYVLGAVET--- 238 (926)
Q Consensus 164 G~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y-~~isr~lGp~~Gf~~Gw~~~-l~~~~~~a~~~~g~~e~--- 238 (926)
+...+++..+++.++..+.+.-.+-++. +.|=.+ ...+..+|..-+...+.+.. +..+...+......++.
T Consensus 58 s~~~ai~ai~lG~~i~~~~~~l~g~~G~----~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~ 133 (484)
T PRK11375 58 STFSIMLAIILSAFFIAAVMVLNGAAGS----KYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLI 133 (484)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccc----ccCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666766666555444333333333 444444 45555788765455555442 22222222222222222
Q ss_pred -HHHhcCCCCccchhhhccCCCCCCCCCCC-CCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002413 239 -FLKAVPAAGMFRETITKVNGTATPEPIQS-PSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF 311 (926)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~ 311 (926)
+...+|....+. ..+.. .......+..+++.++.+.+.+.|.|...+++.+...+.++.++
T Consensus 134 ~l~~i~~~~~~~~------------~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~ 196 (484)
T PRK11375 134 LIGKIWPGFLTLG------------GDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFG 196 (484)
T ss_pred HHHHhcccccccc------------cccccCCCcHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 334444321100 00000 00111123333445556666778889888888776665544433
No 69
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.73 E-value=1.1 Score=49.15 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 168 SLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (926)
Q Consensus 168 ~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~ 243 (926)
+.++.++++++..+.+.-..+++.+ -++...-.++.+..||.++-..=....+.-...+.....|.+..+.+.+
T Consensus 38 s~~gIivs~vlf~~~g~vim~ig~~--f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~ 111 (349)
T COG3949 38 SILGIILSTVLFTLSGAVIMTIGKK--FNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMF 111 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh
Confidence 5667888888888888888999986 4777778899999999998776544333332222222333343444444
No 70
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.57 E-value=1.3 Score=52.50 Aligned_cols=113 Identities=9% Similarity=-0.029 Sum_probs=69.3
Q ss_pred CcccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHH---HHHHHHHHHHHHHHHHHhcCccccCchhhhHH
Q 002413 129 SDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVA---FCGSCTFLTSISLSAIATNGAMKGGGPYYLIG 205 (926)
Q Consensus 129 ~~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~---i~~~i~~~~~ls~aElat~~~p~~GG~Y~~is 205 (926)
-.|++|++ -.......+..+...|++.+...-..|....++... .+.+..++.+-=+-+++ . ....=-.+.|..
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~-~~~~~T~~d~l~ 112 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-K-ARGATTIPDFLE 112 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-ccCCccHHHHHH
Confidence 45677776 222222223344445555554444456554443333 33334444445555666 3 455667888999
Q ss_pred HHhC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002413 206 RALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVP 244 (926)
Q Consensus 206 r~lG-p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~ 244 (926)
+.+| +......+....+..+.-+++...+.+..+...++
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 9999 88888888888888888888888888777654443
No 71
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.50 E-value=2.6 Score=49.37 Aligned_cols=74 Identities=11% Similarity=-0.100 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchh-hhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPY-YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (926)
Q Consensus 164 G~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y-~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~ 241 (926)
+..++++..+++.++......-.+.++. +.|=.+ ...+..+|..-+...+.+..+..+...+..+...++++..
T Consensus 45 s~~~ailai~lG~~i~~~~~~l~~~~G~----r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~ 119 (442)
T TIGR00800 45 SWWQSVIAIILGNLLGGIFVALNSRAGA----KYGLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVAL 119 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHH----HhCCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4556666666665554433333333333 444444 4445578877666666665555554445555545444433
No 72
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.10 E-value=3.7 Score=47.13 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHH-HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 163 GGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (926)
Q Consensus 163 aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr-~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~ 241 (926)
-+..++++..+++.++......-.+.+ =++.|=.+...+| .+|..-....+.+..+..+.-.+......++.+..
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~----G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~ 101 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVI----GADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASL 101 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655544333333333 3445544554555 78877666666665555555555555555555554
Q ss_pred hcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 002413 242 AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF 311 (926)
Q Consensus 242 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~ 311 (926)
..+.. + | ... ..+..+++.++..++.++|.|...+++.+...+.++..+
T Consensus 102 ~~~~~--~--------~----------~~~-~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~ 150 (386)
T TIGR02358 102 LGGRL--F--------G----------EES-PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATL 150 (386)
T ss_pred HHHHh--c--------C----------CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43211 0 0 000 112223334456666778999988888887665555444
No 73
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=94.88 E-value=9.7 Score=43.95 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=52.7
Q ss_pred ccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHH
Q 002413 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQI 275 (926)
Q Consensus 196 ~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 275 (926)
.+-|--.-+++.++|.+++..-..-.++.+...-.+..|.+-.+..++.. ...
T Consensus 75 TG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i---------------------------p~~ 127 (416)
T COG1914 75 TGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI---------------------------PLI 127 (416)
T ss_pred hCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------------------------hHH
Confidence 44456667777788887776655555555544444455554444433321 123
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 002413 276 YGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLA 320 (926)
Q Consensus 276 ~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~ 320 (926)
++.++..+..++-+.+- .+.+++.+...+.++.++++....+..
T Consensus 128 ~g~iItav~~~iil~~~-~~r~~E~~v~~l~~~~~i~~~~~~~~~ 171 (416)
T COG1914 128 IGAVITAVDVLIILLLK-GYRLLERVVLILGLVLVILFVYVAFVA 171 (416)
T ss_pred HHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444333322 566778777777666666665544443
No 74
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=94.45 E-value=14 Score=43.83 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=26.5
Q ss_pred ccCchhhhHHHHhCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 196 KGGGPYYLIGRALGPE-VGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (926)
Q Consensus 196 ~~GG~Y~~isr~lGp~-~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~ 243 (926)
..=-.+.|+.+.+|.. .....+....+......+....+.+..+...+
T Consensus 106 ~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~ 154 (483)
T PRK09442 106 NAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT 154 (483)
T ss_pred CCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344667888888855 45555554444444444555555555554443
No 75
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=93.31 E-value=21 Score=42.08 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=40.3
Q ss_pred hcccchhhccchhhHHHHHHHHHHHHHHHHHHH--HHhccChhhhccc---hhh-hhcccCchHHHHHHHHHHHHHHHHH
Q 002413 384 RSASLKDTQRSIPIGTLAATLTTTALYVISVLL--FGAAATREELLTD---RLL-TATIAWPFPAVIHIGIILSTLGAAL 457 (926)
Q Consensus 384 ~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~--~~~~v~~~~l~~~---~~~-~~~~~~~~~~ii~~~il~s~lss~~ 457 (926)
..--.||+ |+..|+.+.+.+...++++...+. .+....++....+ +.. .........-++.++++.+.+|++.
T Consensus 258 R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~ 336 (471)
T TIGR02119 258 RCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVN 336 (471)
T ss_pred HHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Confidence 44445654 566777777766555554443221 1111111111112 222 2223333445666777777777777
Q ss_pred HHhhhhhHH
Q 002413 458 QSLTGAPRL 466 (926)
Q Consensus 458 s~l~~asR~ 466 (926)
+.+.+.+=+
T Consensus 337 s~l~~~ss~ 345 (471)
T TIGR02119 337 SLLLQSSST 345 (471)
T ss_pred HHHHHHHHH
Confidence 777666543
No 76
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=92.63 E-value=14 Score=42.67 Aligned_cols=58 Identities=21% Similarity=0.078 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhhhhhhhhhHhhhcccchhhc-cchhhHHHHHHHHHHHHHHHHHHHHHh
Q 002413 362 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQ-RSIPIGTLAATLTTTALYVISVLLFGA 419 (926)
Q Consensus 362 ~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~-rsIP~a~~~ai~~~~v~Yil~~~~~~~ 419 (926)
++++.++.+++++|+....+.-+-.|+|||. |++-+....++....++|+...+.--.
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL 252 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYL 252 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4677889999999999999999999999997 578888899999999999887664333
No 77
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=92.33 E-value=13 Score=42.82 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=25.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCC
Q 002413 437 AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP 477 (926)
Q Consensus 437 ~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP 477 (926)
..+..-++.++++.+..|++.+.+.+.+=+ +++|=+-|
T Consensus 290 p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~---~~~Di~~~ 327 (406)
T PF00474_consen 290 PPGLAGLFLAGILAAIMSTADSLLLAISSI---FSRDIYKP 327 (406)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCC
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHhhhhhh---hhHHhhhc
Confidence 344556777788888888888888777654 46675544
No 78
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=90.82 E-value=36 Score=39.25 Aligned_cols=47 Identities=6% Similarity=-0.111 Sum_probs=31.1
Q ss_pred cCchhhhHHHHhCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 197 GGGPYYLIGRALGPE-VGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (926)
Q Consensus 197 ~GG~Y~~isr~lGp~-~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~ 243 (926)
.=..+.|+.+.+|+. .....++...+......+....+.+..+...+
T Consensus 65 ~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~ 112 (407)
T TIGR00813 65 AYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT 112 (407)
T ss_pred CCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888888874 55555666666666666777777766665544
No 79
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=90.37 E-value=26 Score=41.68 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=73.7
Q ss_pred HHHHHhhhhhhhhhHhhhcccchhhccchhhHHHH-HHHHHHHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHH
Q 002413 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIH 445 (926)
Q Consensus 367 ~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~-ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~ 445 (926)
.++-.+-+.||-|+--.=-|-. .+|+|-++-.. ..-...+-|+.-...+.. -| +-..+++....-.|. .+.+.
T Consensus 206 ~LG~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~-~p--~~~~npFf~~~P~~~-~~p~~ 279 (534)
T PF02705_consen 206 VLGAVFLCVTGAEALYADMGHF--GRKPIRIAWFFLVFPALLLNYFGQGALLLS-HP--EAVSNPFFLLIPEWL-LWPMV 279 (534)
T ss_pred hcchHHHHHhhHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHccHHHHHHc-Cc--chhhhHHHHHhHHHH-HHHHH
Confidence 4555566899999765422322 35666655554 233333334432222111 11 122445543332221 12222
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccccc--CCC---CchhHHHHHHHHHhhhhhcccchhhhhHHHHH
Q 002413 446 IGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA--EGR---EPHIATFFTAFICIGCVIIGNLDLITPTITMF 520 (926)
Q Consensus 446 ~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~--~~g---~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~ 520 (926)
+...++++-+.-+.+.++--+....-+-|.+|+.+....+ +.| .|..--++......+.+...+-+.+++..+++
T Consensus 280 ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiA 359 (534)
T PF02705_consen 280 ILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIA 359 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHH
Confidence 2222222323333344444455555678999986554322 222 35433333222223333356677888877777
Q ss_pred HHHHHHHHHH
Q 002413 521 FLLCYSGVNL 530 (926)
Q Consensus 521 ~ll~y~~i~l 530 (926)
...+..+..+
T Consensus 360 Vt~tM~iTT~ 369 (534)
T PF02705_consen 360 VTGTMLITTI 369 (534)
T ss_pred HHHHHHHHHH
Confidence 6666654443
No 80
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=89.81 E-value=0.006 Score=71.58 Aligned_cols=60 Identities=8% Similarity=-0.144 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCccEEEEecCCCCCCCCcccHHHHHHHhhcCCCceEEEccCCceeeeec
Q 002413 864 TLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLF 925 (926)
Q Consensus 864 ~~~lneli~~~S~~a~lv~~~LP~p~~~~~~~~Ym~~l~~lt~~l~p~llVrG~~~~V~T~y 925 (926)
....|+.++..|.+++..-.+=|.|.+-.....|+++++.++++ ++++.+|..+.+++.+
T Consensus 943 ~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t~~k~~~~~~~~--~~~~~~~k~~~~~~~~ 1002 (1075)
T KOG2082|consen 943 IHDRNAPRRPSSLHSDEARPFETAPTKVQMTWTRDKYMASTSNP--AFSLSGFKDLFSMKPD 1002 (1075)
T ss_pred chhcCCccccccccccccccCCCCCcceechhhhhhHHHhccCC--cchhccCCcccccChh
Confidence 34556777777888888777722222324456899999999887 8999999998888765
No 81
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=89.27 E-value=55 Score=39.02 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC
Q 002413 439 PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 473 (926)
Q Consensus 439 ~~~~ii~~~il~s~lss~~s~l~~asR~l~alArD 473 (926)
...-++.++++.+..|++.+.+.+.+=+ +++|
T Consensus 325 ~l~gl~~a~ilAA~mST~~s~l~a~ss~---~~~D 356 (502)
T PRK15419 325 WIAGILLSAILAAVMSTLSCQLLVCSSA---ITED 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3445677788888888888887777643 4555
No 82
>PRK09395 actP acetate permease; Provisional
Probab=89.13 E-value=60 Score=39.23 Aligned_cols=41 Identities=10% Similarity=-0.101 Sum_probs=22.1
Q ss_pred hhHHHHhC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002413 202 YLIGRALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (926)
Q Consensus 202 ~~isr~lG-p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~ 242 (926)
.|..+.+| +......+....+......+....+.+..+...
T Consensus 136 d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~ 177 (551)
T PRK09395 136 DVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL 177 (551)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777 456666666655544444444455554444433
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=88.62 E-value=54 Score=38.09 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhhhhhhHhhh------cccchhhccchhhHHHHHHHHHHHHHHHHH
Q 002413 364 FNALVGLFFPAVTGIMAGSNR------SASLKDTQRSIPIGTLAATLTTTALYVISV 414 (926)
Q Consensus 364 f~~~~~i~f~a~tG~e~~a~~------s~E~knP~rsIP~a~~~ai~~~~v~Yil~~ 414 (926)
....+++.|--..|+-.-.|. .-+.|+.|||+ .++.+.+.++|+..-
T Consensus 236 ~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv----~wA~~fIg~fYi~~~ 288 (529)
T COG4147 236 PIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSV----FWATGFIGIFYILTP 288 (529)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 344455555455666555554 57788888776 455667777887743
No 84
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=87.78 E-value=67 Score=38.15 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhC
Q 002413 440 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 473 (926)
Q Consensus 440 ~~~ii~~~il~s~lss~~s~l~~asR~l~alArD 473 (926)
..-++.++++.+..|++.+.+.+.+=+ +++|
T Consensus 319 l~gl~~a~ilaA~mST~~s~l~s~ss~---~~~D 349 (487)
T TIGR02121 319 IAGILLAAILAAIMSTISSQLLVSSSA---LTED 349 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 345667777778888887777776644 3455
No 85
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=87.48 E-value=47 Score=39.81 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhh-hhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhcc---------Chhhhccc-hh
Q 002413 363 SFNALVGLFFPAV-TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAA---------TREELLTD-RL 431 (926)
Q Consensus 363 ~f~~~~~i~f~a~-tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v---------~~~~l~~~-~~ 431 (926)
.+..+++..|++. .|+-.....+.=.|. +.+++|-.........++.++..+++..++ +.++...+ +-
T Consensus 250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~ 328 (523)
T PF00209_consen 250 VWIAALGQVFFSLSIGFGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPG 328 (523)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHH
T ss_pred HHHHHHHHHhhccCCCcceEEEEcCcCCC-CccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCC
Confidence 4677888888855 344444444544443 568888777776666666655332222221 11111111 10
Q ss_pred ------hhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCC
Q 002413 432 ------LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (926)
Q Consensus 432 ------~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg 474 (926)
..+...-|.+.+..+..++..+-+++++..+.--.+-+.-.|.
T Consensus 329 L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~ 377 (523)
T PF00209_consen 329 LAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDE 377 (523)
T ss_dssp HHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeec
Confidence 1111122345555555555666666666665555554444454
No 86
>PRK12488 acetate permease; Provisional
Probab=84.58 E-value=1e+02 Score=37.24 Aligned_cols=42 Identities=10% Similarity=-0.044 Sum_probs=22.3
Q ss_pred hhhHHHHhC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002413 201 YYLIGRALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (926)
Q Consensus 201 Y~~isr~lG-p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~ 242 (926)
+.|..+.+| +......+....+....-.+....+.+..+...
T Consensus 133 ~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l 175 (549)
T PRK12488 133 ADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL 175 (549)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666 556666666555444444444455554444443
No 87
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=84.22 E-value=1.1e+02 Score=37.13 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=28.5
Q ss_pred CchhhhHHHHhC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 198 GGPYYLIGRALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (926)
Q Consensus 198 GG~Y~~isr~lG-p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~ 243 (926)
=-.|.|..+.+| +......++...+......+....+.+..+...+
T Consensus 95 ~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~ 141 (552)
T TIGR03648 95 YTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFL 141 (552)
T ss_pred ccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888887 4467777766666655555555555555554443
No 88
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=83.98 E-value=1.1e+02 Score=37.04 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=14.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 002413 287 IVFGGVKIINRVAPTFLIPVLLSIF 311 (926)
Q Consensus 287 in~~Gvk~~~~~~~~~~~~~ll~i~ 311 (926)
..+-|.+.....+.+=.++.+++.+
T Consensus 195 t~~GGm~av~~td~iQ~~im~~g~i 219 (549)
T TIGR02711 195 VLFGGMLATTWVQIIKAVLLLFGAT 219 (549)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455777777776666655544433
No 89
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=83.78 E-value=94 Score=36.20 Aligned_cols=77 Identities=10% Similarity=0.016 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHH-HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002413 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (926)
Q Consensus 164 G~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr-~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~ 242 (926)
+...+++..+++.++..+.....+-++ |+.|=.+...+| .||..-....+.+..+..+...+......++.+...
T Consensus 40 ~~~~ailai~~G~~l~~i~~~~~~~~G----~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~ 115 (440)
T PF02133_consen 40 SFWQAILAILIGNLLGAILVALMGIIG----PRTGLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAAL 115 (440)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTHHH----HCC---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccc----cccCCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665544433333333 456666666666 788766666666666665555566555556666555
Q ss_pred cC
Q 002413 243 VP 244 (926)
Q Consensus 243 ~~ 244 (926)
++
T Consensus 116 ~~ 117 (440)
T PF02133_consen 116 LG 117 (440)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 90
>PRK09928 choline transport protein BetT; Provisional
Probab=83.34 E-value=1.2e+02 Score=37.21 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=52.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhh---h
Q 002413 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLI---T 514 (926)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l---~ 514 (926)
-|++.++.+..++.++-...++.-+++-++-.++..|.-|.- .-++..+=.+++++ +++++++++.|.++.+ +
T Consensus 405 lP~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~---~pp~~~RifW~v~i-g~la~~LL~~GGL~aLQt~s 480 (679)
T PRK09928 405 YPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS---DAPNWLRVFWSVAI-GLLTLGMLMTNGISALQNTT 480 (679)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC---CCCcceeeHHHHHH-HHHHHHHHHhcCHHHHHHHH
Confidence 355566666655555556666666777777777776653310 11233344556655 4444455555656544 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 002413 515 PTITMFFLLCYSGVNLSCFLLD 536 (926)
Q Consensus 515 ~i~s~~~ll~y~~i~la~~~~~ 536 (926)
-+.++.|.+...+++++.++..
T Consensus 481 ii~alPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 481 VIMGLPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444
No 91
>PLN00149 potassium transporter; Provisional
Probab=82.26 E-value=64 Score=40.03 Aligned_cols=155 Identities=13% Similarity=0.056 Sum_probs=64.9
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHH-HHHHHHHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHHH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~-ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~~ 446 (926)
++-.+-++||-|+--.=-|- =.+|+|-+|-.. ..-...+-|+.-...+.-......-..+++....-.|...+.+.+
T Consensus 274 LGgV~L~iTG~EALyADlGH--F~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~~P~~vl 351 (779)
T PLN00149 274 LGGILLCITGSEAMFADLGH--FSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLRWPVLVI 351 (779)
T ss_pred ecchhhcccchhhhhhcccC--CCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhHHHHHHH
Confidence 34445588999875443332 335666665543 333334445553332221111001122355444333322222222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccC--CC---CchhHHHHHHHHHhhhhhcccchhhhhHHHHHH
Q 002413 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE--GR---EPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (926)
Q Consensus 447 ~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~--~g---~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ 521 (926)
+.+.+.++ .-+.+.++=-+....-+-|.+|+.+.....+ .| .|..--++......+.+.+.+-+.+++..+++.
T Consensus 352 AtlAaIIA-SQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 430 (779)
T PLN00149 352 AILAAVVG-SQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAV 430 (779)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhh
Confidence 22222222 2222333333344444679999866553322 22 343222222111122222355566666655544
Q ss_pred HHHH
Q 002413 522 LLCY 525 (926)
Q Consensus 522 ll~y 525 (926)
..+.
T Consensus 431 ~~vM 434 (779)
T PLN00149 431 ITVM 434 (779)
T ss_pred ehHH
Confidence 4333
No 92
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=80.78 E-value=40 Score=41.25 Aligned_cols=151 Identities=11% Similarity=0.149 Sum_probs=67.8
Q ss_pred HHHHHhhhhhhhhhHhhhcccchhhccchhhHHH-HHHHHHHHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHH
Q 002413 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTL-AATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIH 445 (926)
Q Consensus 367 ~~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~-~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~ 445 (926)
+++-.+-++||-|+--.=-|-. .+|+|-.+-. ...-...+-|+.-...+. .-| + -..+++....-.| +..
T Consensus 243 ~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll-~~p-~-~~~NpFf~~~P~~----~~~ 313 (688)
T TIGR00794 243 SLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLS-KHP-E-AIKNPFFLSIPDW----ALW 313 (688)
T ss_pred eccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHh-cCc-c-hhcCcHHHhCchH----HHH
Confidence 3455556899988765433333 3566666555 333334444554322221 112 2 2345555443222 222
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHHHHHHhCCCCCcccccccc---CCC--CchhHHHHHHHHHhhhhhcccchhhhhHH
Q 002413 446 IGIILSTLGAALQS---LTGAPRLLAAIANDDILPVLNYFKVA---EGR--EPHIATFFTAFICIGCVIIGNLDLITPTI 517 (926)
Q Consensus 446 ~~il~s~lss~~s~---l~~asR~l~alArDg~lP~~~~~~~~---~~g--~P~~Aill~~~i~~i~~lig~~~~l~~i~ 517 (926)
-.++++++++..++ +.++=-+....-+-|++|+.+....+ +++ .|..--++......+.+.+.+-+.+++..
T Consensus 314 p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AY 393 (688)
T TIGR00794 314 PLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAY 393 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHh
Confidence 23333333333322 33333344444578999986654322 222 34322222222212222245566777666
Q ss_pred HHHHHHHHH
Q 002413 518 TMFFLLCYS 526 (926)
Q Consensus 518 s~~~ll~y~ 526 (926)
+++-..+..
T Consensus 394 GiaVt~tM~ 402 (688)
T TIGR00794 394 GIAVTGTFL 402 (688)
T ss_pred hhhhhhhhH
Confidence 655544443
No 93
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=80.61 E-value=34 Score=41.18 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=68.5
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHH-HHHHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHHH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATL-TTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~-~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~~ 446 (926)
++-.+-+.||-|+--.=-|- =.+|+|-++-...++ ...+-|+.-...+.. .++ -..+++....-.| +..-
T Consensus 218 LG~V~L~vTGaEALYADmGH--FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~--~p~-~~~NpFf~~~P~~----~~~p 288 (622)
T PRK10745 218 LGAVVLAITGVEALYADMGH--FGKFPIRLAWFTVVLPSLVLNYFGQGALLLK--NPE-AIKNPFFLLAPDW----ALIP 288 (622)
T ss_pred ecceeeeccchHHHhhccCC--CCccceeeeehhhHHHHHHHHhcchHHHHhc--Cch-hhcCcHHHhCChh----HHHH
Confidence 45555688998875443332 346677666554333 444556553322221 112 2345554433222 2222
Q ss_pred HHHHHHHHHHHHH---hhhhhHHHHHHHhCCCCCcccccccc---CCC--CchhHHHHHHHHHhhhhhcccchhhhhHHH
Q 002413 447 GIILSTLGAALQS---LTGAPRLLAAIANDDILPVLNYFKVA---EGR--EPHIATFFTAFICIGCVIIGNLDLITPTIT 518 (926)
Q Consensus 447 ~il~s~lss~~s~---l~~asR~l~alArDg~lP~~~~~~~~---~~g--~P~~Aill~~~i~~i~~lig~~~~l~~i~s 518 (926)
.++++++++..++ +.++=-+....-+-|++|+.+....+ +++ .|..--++......+.+.+.+-+.+++..+
T Consensus 289 ~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYG 368 (622)
T PRK10745 289 LLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYG 368 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhh
Confidence 2333444433322 33333344444578999986654322 222 343222222221122223456667776666
Q ss_pred HHHHHHHH
Q 002413 519 MFFLLCYS 526 (926)
Q Consensus 519 ~~~ll~y~ 526 (926)
++-..+..
T Consensus 369 iAVt~tM~ 376 (622)
T PRK10745 369 IAVTGTMV 376 (622)
T ss_pred hhheeHhH
Confidence 55444443
No 94
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=79.32 E-value=39 Score=39.90 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Q 002413 274 QIYGIIVTIILCFIVFGGVKIINRV 298 (926)
Q Consensus 274 ~~~~~i~l~l~~~in~~Gvk~~~~~ 298 (926)
..+++++++.+..+.-+|....+++
T Consensus 149 vpitl~IL~~LF~iQ~~GT~~Vg~~ 173 (627)
T COG3158 149 VPITLIILVLLFLIQRFGTGRVGKL 173 (627)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhh
Confidence 4567777778888888888777764
No 95
>PLN00148 potassium transporter; Provisional
Probab=78.20 E-value=53 Score=40.70 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=48.7
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHH-HHHHHHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHHH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAA-TLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~a-i~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~~ 446 (926)
++-.+-++||-|+--.=-|- =.+|+|-++-... .-...+-|+.-...+. .-| ++ ..+++....-.+...+.+.+
T Consensus 273 LGgV~L~iTGaEALyADlGH--Fg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll-~~p-~~-~~npFf~~iP~~~~~P~~vl 347 (785)
T PLN00148 273 LGGILLSITGTEAMFADLGH--FTAASIRLAFATVIYPCLVVQYMGQAAFLS-KNI-PS-IPNSFYDSIPDPVFWPVFVI 347 (785)
T ss_pred ecchheeccchhhhhhhccC--CCccceEEeeeehHHHHHHHHHcchHHHHh-cCc-cc-ccCcHHHhCCchhHHHHHHH
Confidence 44445588999875543332 2356666554422 2333344444322221 112 22 34455544333322222222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc
Q 002413 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK 483 (926)
Q Consensus 447 ~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~ 483 (926)
+.+ +++-+.-+.+.++=-+....-+-|.+|+.+...
T Consensus 348 Atl-AtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvh 383 (785)
T PLN00148 348 ATL-AAIVGSQAVITATFSIVKQCHALGCFPRVKVVH 383 (785)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEe
Confidence 222 222222222333333444444679999866553
No 96
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=77.55 E-value=1.6e+02 Score=34.79 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=27.5
Q ss_pred HHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 274 QIYGIIVTI-ILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV 315 (926)
Q Consensus 274 ~~~~~i~l~-l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iii 315 (926)
.+++.++.+ +...+-..|++...|++.+-..++.++.+.+.+
T Consensus 171 ~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~I 213 (497)
T COG1953 171 ELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAI 213 (497)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHH
Confidence 344444443 444455689999999998888777666664444
No 97
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=77.25 E-value=7.8 Score=42.58 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=73.2
Q ss_pred hhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-------chhhhHHHH-hCCchhH-HHHHHHHHHHH
Q 002413 155 RFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGG-------GPYYLIGRA-LGPEVGV-SIGLCFFLGNA 225 (926)
Q Consensus 155 ~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~G-------G~Y~~isr~-lGp~~Gf-~~Gw~~~l~~~ 225 (926)
+++.++-.+|.++...++.++.++.+..-+- +.+-|.+..- -.|.=+..+ ++|.+|+ .+-..-.+-..
T Consensus 137 gLP~AvlhGGyw~i~amvg~A~vCcyTGk~L---i~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELl 213 (524)
T KOG4303|consen 137 GLPIAVLHGGYWSIGAMVGVAYVCCYTGKLL---IECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELL 213 (524)
T ss_pred ccceeeeEcchhHHHHHHhhhhhhhccchhh---hhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHH
Confidence 4455666778777666666666655432221 1222222222 356666665 8898884 44444555566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 002413 226 VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP 305 (926)
Q Consensus 226 ~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~ 305 (926)
..+-+|++..+..+..-||..+. +...| .++..++++-+.++ -..|...++.++.++-
T Consensus 214 mTCIlYvVv~gdLl~~~fP~~sv------------------d~~sW--m~i~~a~LLpc~FL--k~Lk~VS~lSf~ct~s 271 (524)
T KOG4303|consen 214 MTCILYVVVAGDLLQSCFPGLSV------------------DKASW--MMITSASLLPCSFL--KDLKIVSRLSFFCTIS 271 (524)
T ss_pred HHHHhhhheechhhhccCCCCCc------------------cccch--hhhhhHHHhhhHHH--HHHHHHHHHHHHHHHH
Confidence 67778888777887777775421 01111 23444444433333 3567788888877766
Q ss_pred HHHH
Q 002413 306 VLLS 309 (926)
Q Consensus 306 ~ll~ 309 (926)
+++.
T Consensus 272 H~vi 275 (524)
T KOG4303|consen 272 HLVI 275 (524)
T ss_pred HHHH
Confidence 6554
No 98
>PLN00151 potassium transporter; Provisional
Probab=77.23 E-value=39 Score=41.91 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHH
Q 002413 274 QIYGIIVTIILCFIVFGGVKIINR 297 (926)
Q Consensus 274 ~~~~~i~l~l~~~in~~Gvk~~~~ 297 (926)
..+++++++++..+.-+|....++
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~ 298 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGF 298 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhh
Confidence 456777777778888888765554
No 99
>PLN00150 potassium ion transporter family protein; Provisional
Probab=73.59 E-value=53 Score=40.69 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=64.0
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHH-HHHHHHHHHHHHHHHHHHhccChhhhccchhhhhcccCchHHHHHH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTL-AATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~-~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ii~~ 446 (926)
++-.+-++||-|+--.=-|- =.+|+|-++-. ...-...+-|+.-...+.. -| + -..+++....-.|...+.+.+
T Consensus 290 LG~V~L~iTGaEALyADlGH--Fg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~-~p-~-~~~npFf~~iP~~~~~P~~vl 364 (779)
T PLN00150 290 LGGIVLCMTGTEAMFADLGH--FTVKSMQIAFTSLVYPCLLLTYLGQAAYLVK-HM-E-DVNDPFYRSLPKPIYWPIFVL 364 (779)
T ss_pred ecceeeeecchhhhhccccC--CCccceeeeehhhHHHHHHHHHcchHHHHhc-Cc-c-cccCcHHHhCCchhHHHHHHH
Confidence 44445588998875433232 33566666554 2333333344443222211 11 1 234455444332322222222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccC--CC---CchhHHHHHHHHHhhhhhcccchhhhhHHHHHH
Q 002413 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE--GR---EPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (926)
Q Consensus 447 ~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~--~g---~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ 521 (926)
..+ +++-+.-+.+.++=-+....-+-|.+|+.+.....+ .| .|..--++......+.+.+.+-+.+++..+++.
T Consensus 365 Atl-AtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 443 (779)
T PLN00150 365 ATC-SAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAV 443 (779)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhhe
Confidence 222 222222222333333444444679999866553222 22 343222222222122222455566666655544
Q ss_pred HHH
Q 002413 522 LLC 524 (926)
Q Consensus 522 ll~ 524 (926)
..+
T Consensus 444 ~~v 446 (779)
T PLN00150 444 VGV 446 (779)
T ss_pred ehh
Confidence 333
No 100
>PRK10484 putative transporter; Provisional
Probab=69.31 E-value=2.5e+02 Score=33.58 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002413 438 WPFPAVIHIGIILSTLGAALQSLTGAPRL 466 (926)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~ 466 (926)
.+..-++.++++.+..|++.+.+.+++=+
T Consensus 326 ~~l~Gl~~a~ilAA~mST~~s~l~s~st~ 354 (523)
T PRK10484 326 VPLVGFFAAVLFGAILSTFNGFLNSASTL 354 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777787777777666543
No 101
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=59.44 E-value=3.1e+02 Score=31.15 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=21.8
Q ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 206 RALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (926)
Q Consensus 206 r~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~ 243 (926)
|.-++..-+..+....+...........|.+..+....
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~ 152 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL 152 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33455666666666655555555555666666655543
No 102
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=58.46 E-value=2.2e+02 Score=32.59 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=55.4
Q ss_pred hhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHH
Q 002413 202 YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVT 281 (926)
Q Consensus 202 ~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l 281 (926)
..+.+.+|+.=+...+....++...++--.+.+++|++...++. .....+.++..
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------------------~~y~~~v~~~~ 313 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------------------LSYKTWVIVFT 313 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------------CCHHHHHHHHH
Confidence 56677899888888888888887666655666788888876553 12334555555
Q ss_pred HHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 002413 282 IILCFIVFGGVKIINRV-APTFLIPVLLSIFCIFVGI 317 (926)
Q Consensus 282 ~l~~~in~~Gvk~~~~~-~~~~~~~~ll~i~~iiig~ 317 (926)
++..++...|....-++ ..++.++--++++.+++++
T Consensus 314 l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~l 350 (378)
T TIGR00796 314 LFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSF 350 (378)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666676654443 3333333334444444444
No 103
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=57.21 E-value=1.2e+02 Score=28.01 Aligned_cols=84 Identities=8% Similarity=0.050 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHhcCceeEEEEEEEeCCCCCchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHhhCCCCC
Q 002413 593 HPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNL 672 (926)
Q Consensus 593 ~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l 672 (926)
..++++.+-.+.+....-+.++||.+.+.....++.++..+.+.+..++.++. ..++...+..+++....+..
T Consensus 12 s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~I~~~~~~~----- 84 (124)
T cd01987 12 AERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAE--VVTLPGDDVAEAIVEFAREH----- 84 (124)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCE--EEEEeCCcHHHHHHHHHHHc-----
Confidence 44678888877765445566778887654322233333334444444444432 33555677888888887664
Q ss_pred CccEEEeeccc
Q 002413 673 KPNIVVMRYPE 683 (926)
Q Consensus 673 ~PNtv~lg~~~ 683 (926)
+.+.++||...
T Consensus 85 ~~dllviG~~~ 95 (124)
T cd01987 85 NVTQIVVGKSR 95 (124)
T ss_pred CCCEEEeCCCC
Confidence 46899999874
No 104
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=55.74 E-value=4.2e+02 Score=31.49 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=50.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCC-CCCccccccccCCCCchhHHHHHHHHHhhhhhcccch---hh
Q 002413 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD-ILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLD---LI 513 (926)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg-~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~---~l 513 (926)
-|+..++.+..++.++....++.-+++.++-.++.+| .=|. +..+=.++++ .++++.++++.|.++ .+
T Consensus 388 lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~-------~~~ri~W~~~-~~~~a~~ll~~ggl~~lq~~ 459 (485)
T PF02028_consen 388 LPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPP-------RWLRIFWGLI-IGALAIVLLLIGGLDALQSA 459 (485)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS--------HHHHHHHHHH-HHHHHHHHHHHHSSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCc-------hHHHHHHHHH-HHHHHHHHHHhCCHHHHHHH
Confidence 3556666666666666666777777777787877765 1121 1111122332 234444444556665 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 002413 514 TPTITMFFLLCYSGVNLSCFLLD 536 (926)
Q Consensus 514 ~~i~s~~~ll~y~~i~la~~~~~ 536 (926)
..+.++.+.+...+++++.++.-
T Consensus 460 ~ii~~lP~~~v~~~~~~~~~k~l 482 (485)
T PF02028_consen 460 SIIGGLPFSFVMLLMCISFIKAL 482 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666665544
No 105
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=52.25 E-value=1.6e+02 Score=34.17 Aligned_cols=91 Identities=19% Similarity=0.352 Sum_probs=58.1
Q ss_pred hHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHH
Q 002413 203 LIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTI 282 (926)
Q Consensus 203 ~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~ 282 (926)
.+.+.+|+.-....|.+..++...++---..+++||+...++.. ..+.+.+++.+
T Consensus 266 i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki-------------------------sY~~~v~i~~i 320 (427)
T PF05525_consen 266 IANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI-------------------------SYKVWVIIFTI 320 (427)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------ChHHHHHHHHH
Confidence 44557888878888888877776555555667789988877632 23567777777
Q ss_pred HHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 002413 283 ILCFIVFGGVKIINRVA-PTFLIPVLLSIFCIFVGIL 318 (926)
Q Consensus 283 l~~~in~~Gvk~~~~~~-~~~~~~~ll~i~~iiig~~ 318 (926)
+..++..+|+...-++. .++.++-=+++++++++++
T Consensus 321 ~S~~ian~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~ 357 (427)
T PF05525_consen 321 FSFIIANLGLDQIIKISVPILMFIYPVAIVLILLNLF 357 (427)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77788888876544433 3334433344445555543
No 106
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=45.82 E-value=2.6e+02 Score=32.67 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=59.8
Q ss_pred hhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHH
Q 002413 202 YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVT 281 (926)
Q Consensus 202 ~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l 281 (926)
.++.+.+|+......+...+++...++.-...+++|++...++ ...+.+.+++.
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------------------isY~~~v~i~~ 322 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------------------LSYRTLVFILG 322 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------------------CcHHHHHHHHH
Confidence 3566789999999999998888877766667788899877654 12346667777
Q ss_pred HHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 002413 282 IILCFIVFGGVKIINRV-APTFLIPVLLSIFCIFVGIL 318 (926)
Q Consensus 282 ~l~~~in~~Gvk~~~~~-~~~~~~~~ll~i~~iiig~~ 318 (926)
++...+..+|....-+. -.++..+-=+++++++++++
T Consensus 323 l~S~~lSn~G~~~II~~s~PiL~~iYP~~IvLill~l~ 360 (439)
T PRK15433 323 GFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFT 360 (439)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77777777786644333 33333333344444555543
No 107
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=34.09 E-value=4.3e+02 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 002413 168 SLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIG--LCFFLGNAVAGAMYVLGAVETF 239 (926)
Q Consensus 168 ~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~G--w~~~l~~~~~~a~~~~g~~e~~ 239 (926)
-+++|++..+++.-.+-=|++++--|....+ |.+|.|.-...-++.-| |+.|+-.+++..+.+.++..|+
T Consensus 174 nwIGFlltycl~tT~agRYGA~~GfGLsLik--wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~~i~Yi 245 (262)
T KOG4812|consen 174 NWIGFLLTYCLTTTHAGRYGAISGFGLSLIK--WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRGFINYI 245 (262)
T ss_pred HHHHHHHHHHHHhhHhhhhhhhhccchhhhe--eeEEeecccccccccccchHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455555555554445556666655555445 88888866666666663 3333333344445555565655
No 108
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=28.28 E-value=6.2e+02 Score=28.36 Aligned_cols=37 Identities=32% Similarity=0.377 Sum_probs=27.2
Q ss_pred hhhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002413 431 LLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLL 467 (926)
Q Consensus 431 ~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l 467 (926)
......++.++.+..+.+++..++.+...+.+++-++
T Consensus 71 ~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~ 107 (349)
T COG3949 71 ILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLL 107 (349)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 3444455567788999999999998888777776544
No 109
>TIGR00930 2a30 K-Cl cotransporter.
Probab=27.46 E-value=1.5e+03 Score=29.52 Aligned_cols=44 Identities=5% Similarity=-0.089 Sum_probs=19.4
Q ss_pred ccccceeEEEeCCCCCCCCCCCCchhHHHHHHHHHhcCceeEEE
Q 002413 570 KNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIF 613 (926)
Q Consensus 570 knw~P~~L~~~~~~~~~~~~~~~~~~L~~f~~~l~k~g~gl~~~ 613 (926)
-.-||..+++.-+.+...++.......++..+...+.+++++++
T Consensus 664 G~l~PNtv~lg~~~~w~~~~~~~~~~y~~~i~~a~~~~~~v~i~ 707 (953)
T TIGR00930 664 GRMKPNTLVMGYKKDWRQAEPRAWETYIGIIHDAFDAHLAVVVV 707 (953)
T ss_pred CCCCCCEEEecCccchhhccchhHHHHHHHHHHHHHcCCcEEEE
Confidence 44678877775321100011111123344444444566776653
No 110
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=23.72 E-value=9.9e+02 Score=27.26 Aligned_cols=74 Identities=16% Similarity=0.096 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVET 238 (926)
Q Consensus 164 G~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~ 238 (926)
|+.-+++..++++++.- -.--|..+-..-.-++=+.-..+++.+|+..+....+..++..+...+..+...+..
T Consensus 81 GwlPa~lWI~~G~if~G-aVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 81 GWLPALLWIVFGCIFAG-AVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred cchHHHHHHHHccHHHH-HHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444433344444333 333444443321333444556777788888888877776666665555544444333
No 111
>PRK10580 proY putative proline-specific permease; Provisional
Probab=23.02 E-value=1.9e+02 Score=33.80 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=21.3
Q ss_pred CCccccCCCCCCCcccccceEeeec
Q 002413 117 EDAPITYGPPKPSDVKLGTLMGVFI 141 (926)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i 141 (926)
++++|+++.++.....+|.++|+.+
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gi 29 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGL 29 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999998844
No 112
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=22.81 E-value=5.5e+02 Score=22.86 Aligned_cols=86 Identities=9% Similarity=0.070 Sum_probs=45.3
Q ss_pred CchhHHHHHHHHHhcCceeEEEEEEEeCCCCCc----hHHHHHHHHHHHHHHHh---hcccceEEEEecCChHHHHHHHH
Q 002413 592 CHPKLADFANCMKKKGRGMSIFVSILDGDYHEC----AEDAKTACKQLATYIDY---KRCEGVAEIVVAPNMSEGFRGIV 664 (926)
Q Consensus 592 ~~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~f~~~~~a~~~~~g~~~l~ 664 (926)
...++++++..+.|...+=+.+.++........ .....+.++.+.++.+. .++..-..+...+ ..+++....
T Consensus 11 ~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 89 (130)
T cd00293 11 ESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD-PAEAILEAA 89 (130)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC-CHHHHHHHH
Confidence 345788888888766444445566665432211 11222333344444432 3444333443333 355666665
Q ss_pred HhhCCCCCCccEEEeeccc
Q 002413 665 QTMGLGNLKPNIVVMRYPE 683 (926)
Q Consensus 665 q~~GlG~l~PNtv~lg~~~ 683 (926)
+. -+++.+++|...
T Consensus 90 ~~-----~~~dlvvig~~~ 103 (130)
T cd00293 90 EE-----LGADLIVMGSRG 103 (130)
T ss_pred HH-----cCCCEEEEcCCC
Confidence 55 448999999864
No 113
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=22.73 E-value=1.2e+03 Score=26.79 Aligned_cols=35 Identities=3% Similarity=0.087 Sum_probs=25.7
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 002413 435 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAA 469 (926)
Q Consensus 435 ~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~a 469 (926)
..|.....+..++.+.+.++|...+-++..=++..
T Consensus 289 ~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 289 LFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445567888899999999988888876655544
No 114
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.23 E-value=2e+02 Score=29.88 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccC-cEEEEEe
Q 002413 742 LMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQ-AEVIVIS 797 (926)
Q Consensus 742 L~lll~~lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~-aev~vv~ 797 (926)
=.+++++|.-+|++=|+.|.||.+.+.+. .++.|+.|-++-+++.=+ ..|.+|.
T Consensus 89 ~~i~iA~lalkhRqnk~~~~riVvFvGSp--i~e~ekeLv~~akrlkk~~Vaidii~ 143 (259)
T KOG2884|consen 89 TGIQIAQLALKHRQNKNQKQRIVVFVGSP--IEESEKELVKLAKRLKKNKVAIDIIN 143 (259)
T ss_pred HHHHHHHHHHHhhcCCCcceEEEEEecCc--chhhHHHHHHHHHHHHhcCeeEEEEE
Confidence 36789999999999988777776655442 233344555554444322 3444443
No 115
>PRK09950 putative transporter; Provisional
Probab=20.37 E-value=1.5e+03 Score=27.05 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=52.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhccc-chhh---
Q 002413 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGN-LDLI--- 513 (926)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~-~~~l--- 513 (926)
-|++.++.+..++.++....++.-+++-++-.++..|.-+.- .-++..+=.+++++ ++++..+++.|. ++.+
T Consensus 398 lP~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~---~P~~~~ri~W~i~~-g~ia~~Ll~~gG~l~~lQ~~ 473 (506)
T PRK09950 398 LPAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGD---DPDRGLRLFWCVVI-TLIPLSILFTGASLDTMKTT 473 (506)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCC---CCCcchhHHHHHHH-HHHHHHHHHhCCcHHHHHHH
Confidence 356667666666666666777777778888788776653310 01122334455544 344444445544 6544
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 002413 514 TPTITMFFLLCYSGVNLSCFLLD 536 (926)
Q Consensus 514 ~~i~s~~~ll~y~~i~la~~~~~ 536 (926)
+.+.++.+.+...+++++.++..
T Consensus 474 ~ii~alP~~~i~~l~~~s~~k~l 496 (506)
T PRK09950 474 VVLTALPFLVILLIKVYGFIRWL 496 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444
Done!