Query 002413
Match_columns 926
No_of_seqs 530 out of 2449
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 01:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 100.0 1.3E-39 4.5E-44 378.1 35.0 372 130-563 5-384 (444)
2 3l1l_A Arginine/agmatine antip 100.0 1E-39 3.5E-44 379.0 33.7 379 130-563 7-399 (445)
3 4djk_A Probable glutamate/gamm 100.0 3.4E-38 1.2E-42 372.9 29.5 358 160-563 35-424 (511)
4 3g40_A Na-K-CL cotransporter; 100.0 2.3E-35 7.8E-40 307.6 19.9 257 566-920 13-281 (294)
5 2jln_A MHP1; hydantoin, transp 97.9 0.0086 2.9E-07 69.6 32.1 253 165-470 58-329 (501)
6 2a65_A Leutaa, Na(+):neurotran 95.1 3.9 0.00013 47.1 25.3 317 133-475 8-371 (519)
7 3dh4_A Sodium/glucose cotransp 92.1 21 0.00072 41.2 26.1 40 435-477 316-355 (530)
8 2xq2_A Sodium/glucose cotransp 88.0 43 0.0015 39.1 23.0 37 438-477 348-384 (593)
9 3twe_A Alpha4H; unknown functi 32.6 26 0.00089 21.7 1.9 17 772-788 9-25 (27)
10 3ctr_A Poly(A)-specific ribonu 27.5 20 0.00067 31.3 1.1 17 673-689 5-21 (101)
11 1whv_A Poly(A)-specific ribonu 25.8 27 0.00091 30.4 1.7 19 671-689 13-31 (100)
12 3ab8_A Putative uncharacterize 25.8 5E+02 0.017 25.7 15.4 112 671-796 107-220 (268)
13 3loq_A Universal stress protei 22.2 6.2E+02 0.021 25.5 15.3 182 593-796 35-235 (294)
14 3mt0_A Uncharacterized protein 21.4 6.4E+02 0.022 25.4 18.8 182 593-796 20-221 (290)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.3e-39 Score=378.09 Aligned_cols=372 Identities=16% Similarity=0.229 Sum_probs=303.8
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
++++|.+..+++ ...+++|+++|...+.+++.+|+ .+++.|++++++.++++++++|++++ +|.+||.|+|++|.+|
T Consensus 5 ~r~l~~~~~~~l-~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~-~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 5 NKKLSLWEAVSM-AVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAK-IVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCBCHHHHHHH-HHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTT-CCCTTTHHHHHHHHHC
T ss_pred CCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcHHHhHHHHhC
Confidence 456777776654 23447899999999999999998 67889999999999999999999998 9999999999999999
Q ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 002413 210 PEV-GVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIV 288 (926)
Q Consensus 210 p~~-Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in 288 (926)
|.+ ++.+||.+++++.+..+.++.++++++...++.. +..+...+++++++++++++|
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~in 140 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP---------------------INTFNIAITEIGIVAFFTALN 140 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------------CchHHHHHHHHHHHHHHHHHH
Confidence 974 6778999999999999999999999998877532 112334577888889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHH
Q 002413 289 FGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNAL 367 (926)
Q Consensus 289 ~~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~ 367 (926)
+.|+|..++++.++..++++.++.+++ ++..... +|+.+.+.+. .+.+++.+
T Consensus 141 ~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~----------------~~~~~~~~~~-----------g~~~~~~~ 193 (444)
T 3gia_A 141 FFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHP----------------SYVIPDLAPS-----------AVSGMIFA 193 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG----------------GGTSCCCSHH-----------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh----------------hhcCCCCCCc-----------chHHHHHH
Confidence 999999999999999999998886554 4432211 2333322111 13467778
Q ss_pred HHHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc---hhh---hhcccCchH
Q 002413 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD---RLL---TATIAWPFP 441 (926)
Q Consensus 368 ~~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~---~~~---~~~~~~~~~ 441 (926)
+...+++|+|+|++++++||+|||+|++|||++.++++++++|++..+.+....|++++.++ ++. ....+....
T Consensus 194 ~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~ 273 (444)
T 3gia_A 194 SAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGF 273 (444)
T ss_dssp HHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHH
Confidence 88889999999999999999999999999999999999999999999998888898876432 111 111233445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCccccccccCCCCchhHHHHHHHHHhhhhhcccchhhhhHHHHHH
Q 002413 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (926)
Q Consensus 442 ~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~i~~lig~~~~l~~i~s~~~ 521 (926)
.++.++++++++++++++++++||++++|||||.+|+ .+.+.++++|.+|+++++++++++.++.+++.+.++.++++
T Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~--~f~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (444)
T 3gia_A 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPE--FFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVF 351 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCS--SCCTTSCCSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHhCCCCCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999995 45443356799999999999998888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 522 LLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 522 ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
+++|.+++++++++|+++ |+ .++.+++|++.|+
T Consensus 352 ~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~~~~~~~ 384 (444)
T 3gia_A 352 MVIYLFVILSHYILIDEV-GG--------RKEIVIFSFIVVL 384 (444)
T ss_dssp HHHHHHHHHHHHHTHHHH-CC--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcC-CC--------cchHHHHHHHHHH
Confidence 999999999999988643 22 1366777777776
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=1e-39 Score=378.99 Aligned_cols=379 Identities=16% Similarity=0.199 Sum_probs=300.8
Q ss_pred cccccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhhhHHHHhC
Q 002413 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (926)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~~isr~lG 209 (926)
++++|.+..+++ .+.+++|+++|...+. +..+|+. +++.|++++++.++++++++|++++ +|.+||.|+|++|.+|
T Consensus 7 ~r~l~~~~~~~l-~ig~~iG~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 7 AHKVGLIPVTLM-VSGAIMGSGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPSPGGSYAYARRCFG 82 (445)
T ss_dssp CCCBCHHHHHHH-HHHHHCSSHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCCTTTHHHHHHHHSC
T ss_pred CCcccHHHHHHH-HHHhHHhhhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCchhhHHhHcC
Confidence 467787777754 3455789999998776 5568885 6889999999999999999999998 9999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHh
Q 002413 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (926)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~ 289 (926)
|.+|+.+||.+++++.+..+.+..++++++...+|... ..++..+++++++++++++|+
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~in~ 141 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---------------------DPWVLTITCVVVLWIFVLLNI 141 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888776555320 123456778888899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHH
Q 002413 290 GGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV 368 (926)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~ 368 (926)
.|+|..++++.++..++++.++.+++ ++..... +++.+++.+.+ .....++..++
T Consensus 142 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~--------~~~~~~~~~~~ 197 (445)
T 3l1l_A 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG----------------ETYMAAWNVSG--------LGTFGAIQSTL 197 (445)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC----------------CCCCCC-------------------HHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----------------hhcccccCccC--------CccHHHHHHHH
Confidence 99999999999999999888775554 3321111 11212221110 00134577788
Q ss_pred HHHhhhhhhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc--hhh---hhcccCchHHH
Q 002413 369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLL---TATIAWPFPAV 443 (926)
Q Consensus 369 ~i~f~a~tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~--~~~---~~~~~~~~~~i 443 (926)
...+++|+|+|.+++++||+|||+|++|||++.++++++++|++..+.+....|++++.++ ++. ....+.....+
T Consensus 198 ~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~ 277 (445)
T 3l1l_A 198 NVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAI 277 (445)
T ss_dssp HHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHH
Confidence 8899999999999999999999999999999999999999999999998888888876433 322 22344556788
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHhhhhhc-------ccchhhhh
Q 002413 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICIGCVII-------GNLDLITP 515 (926)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~i~~li-------g~~~~l~~ 515 (926)
+.++++++++++.++.+++++|++++|||||.+|+ .+. .+|+++|++|++++++++.++.++ ..++++.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~--~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (445)
T 3l1l_A 278 VSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP--IFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSS 355 (445)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCG--GGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcH--HHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99999999999999999999999999999999995 443 357899999999999987665543 34899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccchhHHHHHHHHHhc
Q 002413 516 TITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCI 563 (926)
Q Consensus 516 i~s~~~ll~y~~i~la~~~~~~~~~p~~rp~fk~~~~~~~~~g~i~c~ 563 (926)
+.++.++++|.+++++++++|+ ++| |++++ ..++.+++|++.|+
T Consensus 356 ~~~~~~~~~y~~~~~~~~~~r~-~~~--~~r~~-~~~~~~~~~~~~~~ 399 (445)
T 3l1l_A 356 VSVIFTLVPYLYTCAALLLLGH-GHF--GKARP-AYLAVTTIAFLYCI 399 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-SSS--GGGCT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-cCc--ccccc-hhHHHHHHHHHHHH
Confidence 9999999999999999999985 445 44443 24677888888887
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=3.4e-38 Score=372.85 Aligned_cols=358 Identities=17% Similarity=0.246 Sum_probs=262.7
Q ss_pred hhccchHHHHHHHHHHHHH-HHHHHHHHHHHHh--cCccccCchhhhHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 002413 160 VGMGGIGDSLLVVAFCGSC-TFLTSISLSAIAT--NGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAV 236 (926)
Q Consensus 160 ~g~aG~~~~li~~~i~~~i-~~~~~ls~aElat--~~~p~~GG~Y~~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~ 236 (926)
.+.+|+...+ .+++++++ .++++++++|+++ + +| +||.|+|++|.+||.+||.+||.+++++++..+.+..+++
T Consensus 35 ~~~~G~~~~~-~~~i~~~~~~l~~al~~ael~s~~~-~P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~ 111 (511)
T 4djk_A 35 FATSGFSLVF-FLLLGGILWFIPVGLCAAEMATVDG-WE-EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVL 111 (511)
T ss_dssp HHTTTTHHHH-HHHHHHHHTHHHHHHHHHHHHTTSC-C----CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHccccc-CC-CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567876544 44444444 4569999999999 9 99 9999999999999999999999999999988888888777
Q ss_pred HHHHHhc--CCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHH-
Q 002413 237 ETFLKAV--PAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLS-IFC- 312 (926)
Q Consensus 237 e~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~-i~~- 312 (926)
+++...+ |.. .+..|...+++++++++++++|++|+|..++++.++..++++. +++
T Consensus 112 ~~~~~~~~~p~~--------------------~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (511)
T 4djk_A 112 GALSYILKWPAL--------------------NEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFIL 171 (511)
T ss_dssp HHHHTTTTCGGG--------------------TSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCccc--------------------ccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776542 221 1234556678888999999999999999999999988775443 333
Q ss_pred HHHhhhccCCCCCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHHhhhhhhhhhHhhhcccchhhc
Q 002413 313 IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQ 392 (926)
Q Consensus 313 iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~tG~e~~a~~s~E~knP~ 392 (926)
++++++....+++. ++.. -.+++.|++.. .+++..+...+++|+|+|++++++||+|||+
T Consensus 172 i~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~--------------~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~ 231 (511)
T 4djk_A 172 IALAAIYLHSGAPV----AIEM--DSKTFFPDFSK--------------VGTLVVFVAFILSYMGVEASATHVNEMSNPG 231 (511)
T ss_dssp HHHHHHHTC------------------CCCCCTTS--------------TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT
T ss_pred HHHHHHHHhcCCcc----cccC--cccccCCCccc--------------chHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Confidence 33354333222111 1000 01222222211 1122345667889999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-h----hhh--hccc---CchHHHHHHHHHHHHHHHHHHHhhh
Q 002413 393 RSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-R----LLT--ATIA---WPFPAVIHIGIILSTLGAALQSLTG 462 (926)
Q Consensus 393 rsIP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~-~----~~~--~~~~---~~~~~ii~~~il~s~lss~~s~l~~ 462 (926)
|++|||++.++++++++|++..+++..++|.+++..+ + +.. ...+ .+...++.+++++++++++++++++
T Consensus 232 k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
T 4djk_A 232 RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVG 311 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988776433 1 111 1223 3456788999999999999999999
Q ss_pred hhHHHHHHHhCCCCCcccccc-ccCCCCchhHHHHHHHHHh-hhhhccc--------chhhhhHHHHHHHHHHHHHHHHH
Q 002413 463 APRLLAAIANDDILPVLNYFK-VAEGREPHIATFFTAFICI-GCVIIGN--------LDLITPTITMFFLLCYSGVNLSC 532 (926)
Q Consensus 463 asR~l~alArDg~lP~~~~~~-~~~~g~P~~Aill~~~i~~-i~~lig~--------~~~l~~i~s~~~ll~y~~i~la~ 532 (926)
+||++++|||||.+|+ ++. .+|+++|++|++++.++.. +++++++ ++++.++.+++++++|+++++++
T Consensus 312 ~sR~l~a~ardg~lP~--~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~ 389 (511)
T 4djk_A 312 PSRGMYVTAQKNLLPA--AFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGY 389 (511)
T ss_dssp HHHHTCHHHHGGGCSS--SCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCcccH--HHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 444 3578999999999855443 3334444 78999999999999999999999
Q ss_pred HHHhhcCCCCCCCCcccc--h---hHHHHHHHHHhc
Q 002413 533 FLLDLLDAPSWRPRWKFH--H---WSLSLLGSVFCI 563 (926)
Q Consensus 533 ~~~~~~~~p~~rp~fk~~--~---~~~~~~g~i~c~ 563 (926)
+++|++ +|+.+++||.+ . |...++|++.|+
T Consensus 390 ~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (511)
T 4djk_A 390 IVLVLK-HPDLKRTFNIPGGKGVKLVVAIVGLLTSI 424 (511)
T ss_dssp HHHHHH-CCSCCCSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHh-CCCCCCCeecCCCchHHHHHHHHHHHHHH
Confidence 999864 45566678887 2 446677777766
No 4
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.3e-35 Score=307.60 Aligned_cols=257 Identities=13% Similarity=0.159 Sum_probs=198.4
Q ss_pred CCCcccccceeEEEeCCCCCCCCCCCCchhHHHHHHHHHhcCceeEEEEEEEeCCCCCchHHHHHHHHHHHHHHHhhccc
Q 002413 566 QVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCE 645 (926)
Q Consensus 566 ~~~~knw~P~~L~~~~~~~~~~~~~~~~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (926)
..++|||||++|++++.+ ..++.|++|++.++ +++|++.+++|+..+-.+... ++ .+.++++++++++.
T Consensus 13 ~~~~knWrP~iLV~sg~p-------~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~~~l~--~q-l~~l~~~l~~r~v~ 81 (294)
T 3g40_A 13 SSSERTWKANLLVPVEDP-------RELMGTFDFLRDIT-YPKGSVKLLGLAGNTDKENLL--SQ-LPSISEGFQEEGVF 81 (294)
T ss_dssp ------CCCEEEEEESCH-------HHHHHHHHHHHHHH-TTTCEEEEEECC---CTTCHH--HH-HHHHHHHHHHTTCE
T ss_pred CCCccCCCCcEEEecCCc-------hhhhhHHHHHHHhc-cCceeEEEEEEccCCCccHHH--HH-HHHHHHHHHhCCce
Confidence 367899999999999753 35789999999999 779999999987444222211 22 37789999999999
Q ss_pred ceEEEEecCChHHHHHHHHHhhCCCCCCccEEEeeccchhcccccCCcchhHHHHHHHHHHhcccEEEEecCCCCccccc
Q 002413 646 GVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQ 725 (926)
Q Consensus 646 ~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~~~ 725 (926)
+|+.++.++++.+|+.+++|++|+|++|||||+||||+.+. ..++|+++|+.+.++++||+++|.- |+...
T Consensus 82 a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e------~~~~y~~~i~~~~~~~~nVlil~~~---~~~~f 152 (294)
T 3g40_A 82 SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD------RDEEIREIIRKASMYRMGVLLFSKH---PQAGL 152 (294)
T ss_dssp EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG------GHHHHHHHHHHHHHTTCEEEEEECC---TTTTT
T ss_pred eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh------hhHHHHHHHHHHHHhCceEEEEecC---CccCC
Confidence 99999999999999999999999999999999999997632 2368999999999999999999842 33333
Q ss_pred ccCCceeeE-------E----EecCCchHHHHHHHhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccCcEEE
Q 002413 726 RQYGTIDLY-------W----IVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVI 794 (926)
Q Consensus 726 ~~~g~IDvw-------W----~~~dGgL~lll~~lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~aev~ 794 (926)
.++++|||| | ...||+||+++||+|+++ | +++||+.+|++++++.++.++.|++|++++||.|+..
T Consensus 153 g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~ 229 (294)
T 3g40_A 153 GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKM 229 (294)
T ss_dssp TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 456889999 7 257999999999999886 8 9999999999999999999999999999999999987
Q ss_pred EEecCCccccccCCCCChhhHHHHHHHHHhHhhhhHHhhHhhhhcCCCCcCCCCccccCHHHHHHHHHHHHHHHHHHHhc
Q 002413 795 VISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRH 874 (926)
Q Consensus 795 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lneli~~~ 874 (926)
+|. .++ .++|++
T Consensus 230 vv~-~~F------------------------------------------------------------------~~il~~- 241 (294)
T 3g40_A 230 QVL-REN------------------------------------------------------------------PIKSSK- 241 (294)
T ss_dssp EEE-SSC------------------------------------------------------------------TTTSSS-
T ss_pred Eec-Cch------------------------------------------------------------------HHHHhh-
Confidence 663 211 122334
Q ss_pred CCCccEEEEecCCCCCCCCcccHHHHHHHhhcCC-CceEEEccCCce
Q 002413 875 SRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENV-PRLLIVRGYRRD 920 (926)
Q Consensus 875 S~~a~lv~~~LP~p~~~~~~~~Ym~~l~~lt~~l-~p~llVrG~~~~ 920 (926)
|++|+|+|+.||.-|+ .++++.|++.. .-.||||++|+|
T Consensus 242 s~~ADL~flGl~~~~d-------f~~~~~~~~~~~ssc~f~~dsg~e 281 (294)
T 3g40_A 242 LPFASLHIFSLDPNPD-------LDLARHLMEKAGSSCIFALDSGEE 281 (294)
T ss_dssp CCCCSEEEEECCSSCC-------HHHHHHHHHHHTSEEEEEECCSCC
T ss_pred CcCCCEEEEcCCCCCc-------HHHHHHHHHhcCCeEEEEecCchh
Confidence 5789999999965552 45555555555 477899999987
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.91 E-value=0.0086 Score=69.59 Aligned_cols=253 Identities=10% Similarity=0.030 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCchhh-hHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002413 165 IGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYY-LIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (926)
Q Consensus 165 ~~~~li~~~i~~~i~~~~~ls~aElat~~~p~~GG~Y~-~isr~lGp~~Gf~~Gw~~~l~~~~~~a~~~~g~~e~~~~~~ 243 (926)
...+++..+++.++..+...-.+.++ ++.|-.|. +.+..+|...+....++..+..+...+......++.+...+
T Consensus 58 ~~~a~lai~lG~li~~~~~~l~~~~G----~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~ 133 (501)
T 2jln_A 58 VWQVIVAIAAGCTIAVILLFFTQSAA----IRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEIT 133 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH----HHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH----hhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655544333333333 34455565 45558898888877776655544444444444444444332
Q ss_pred CCCCccchhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 002413 244 PAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKD 323 (926)
Q Consensus 244 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~l~l~~~in~~Gvk~~~~~~~~~~~~~ll~i~~iiig~~~~~~~ 323 (926)
... + | ..+..+..+++.++.+++.++|.+...+++.+...+.++.++.+.+-.+...
T Consensus 134 ~~~--~--------g-----------~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~-- 190 (501)
T 2jln_A 134 RLL--T--------G-----------FTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGA-- 190 (501)
T ss_dssp HHH--H--------C-----------CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHh--c--------C-----------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 100 0 0 0011233444556677778899999999988877666555543333222111
Q ss_pred CCCCCcccccccccccccccccccCCCCCCCCCCCCchhHHHHHHHHH-hhhhhhhhhHhhhcccchhhccc--------
Q 002413 324 DPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLF-FPAVTGIMAGSNRSASLKDTQRS-------- 394 (926)
Q Consensus 324 ~~~~~~~g~~~~~~~~n~~~~~~~~~~~g~~~~~g~~~~~f~~~~~i~-f~a~tG~e~~a~~s~E~knP~rs-------- 394 (926)
|++. .+..+ .. +.+ ..++|..++... .+..++.-..+..+...|+++..
T Consensus 191 -------g~~~----~~~~~---~~-------~~~-~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (501)
T 2jln_A 191 -------DVSL----GEVMS---MG-------GEN-PGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKA 248 (501)
T ss_dssp -------TCCH----HHHTT---CC-------CSS-CCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHH
T ss_pred -------CCcc----hhhhc---cC-------Ccc-chHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhc
Confidence 0000 00000 00 000 123455444432 22223334456677778776541
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHhccChhhhccch--hhhhcc-cCch-HHHHH-HHHHHHHHHHHH-HHhhhhhH
Q 002413 395 ---IPIGTLAATLTTTALYVISVLLFGAAATREELLTDR--LLTATI-AWPF-PAVIH-IGIILSTLGAAL-QSLTGAPR 465 (926)
Q Consensus 395 ---IP~a~~~ai~~~~v~Yil~~~~~~~~v~~~~l~~~~--~~~~~~-~~~~-~~ii~-~~il~s~lss~~-s~l~~asR 465 (926)
.=.+...+..+..++..+..+++..... ..++ .+.... ++.. ..+.. +.+++++++... +++|+++-
T Consensus 249 ~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~----~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~ 324 (501)
T 2jln_A 249 DARYATAQWLGMVPASIIFGFIGAASMVLVG----EWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAY 324 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334433333333222222222221111 1122 122212 3332 45666 777788888777 48999988
Q ss_pred HHHHH
Q 002413 466 LLAAI 470 (926)
Q Consensus 466 ~l~al 470 (926)
.++.+
T Consensus 325 ~l~~~ 329 (501)
T 2jln_A 325 TLCST 329 (501)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88776
No 6
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.10 E-value=3.9 Score=47.09 Aligned_cols=317 Identities=17% Similarity=0.149 Sum_probs=149.0
Q ss_pred ccceEeeeccchhhhhHhHHhhhhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----cccCchhhhHHHH
Q 002413 133 LGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGA-----MKGGGPYYLIGRA 207 (926)
Q Consensus 133 lG~~~Gv~i~~~~~i~Gv~lFl~~g~i~g~aG~~~~li~~~i~~~i~~~~~ls~aElat~~~-----p~~GG~Y~~isr~ 207 (926)
.+.-.|..+.|+.+.+|.+=.-|+++..++-|-+.=++.|+++.++. -.-+-+.|++- |. -+.|..-.| +.
T Consensus 8 W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~-GiPll~~E~al-Gq~~~~~~r~~~i~a~--~~ 83 (519)
T 2a65_A 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLV-GIPLMWIEWAM-GRYGGAQGHGTTPAIF--YL 83 (519)
T ss_dssp CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHT-HHHHHHHHHHH-HHHHHTTTCCSHHHHH--HH
T ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHh-cccchhccCCCHHHHH--HH
Confidence 33334555556666778888899999988766454455555544332 23345677765 33 223333322 22
Q ss_pred hCCc-hhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcC---CCC------------ccchhhhccCCCCCCCC
Q 002413 208 LGPE-VGVSIGLCFFLGNAVAGAMYVLGA-------VETFLKAVP---AAG------------MFRETITKVNGTATPEP 264 (926)
Q Consensus 208 lGp~-~Gf~~Gw~~~l~~~~~~a~~~~g~-------~e~~~~~~~---~~~------------~~~~~~~~~~g~~~~~~ 264 (926)
+.|. ..-.+||.-.+...+....|.+-. ...+...+| ... .+.+.+....+ ...
T Consensus 84 l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~---~~~ 160 (519)
T 2a65_A 84 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKG---DEP 160 (519)
T ss_dssp HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSS---SSC
T ss_pred hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCC---ccc
Confidence 3343 223355554444333333333221 111222222 000 11111100000 000
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCCCCCcccccccccccccc
Q 002413 265 IQSPSLHDLQIYGIIVTIILCFIVFGGV-KIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWF 342 (926)
Q Consensus 265 ~~~~~~~~~~~~~~i~l~l~~~in~~Gv-k~~~~~~~~~~~~~ll~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~ 342 (926)
. ....|...++-+++.++..++...|+ |..+|+..++.-+..+.++++++ ++- .+++. .....|+ .-.+.
T Consensus 161 ~-g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~lt-LpGp~-~~A~~Gl-----~~~~~ 232 (519)
T 2a65_A 161 I-LKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFL-LETPN-GTAADGL-----NFLWT 232 (519)
T ss_dssp B-CCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTT-CEETT-EEHHHHH-----HHHHS
T ss_pred c-cCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCc-hhHHHHH-----HHHhc
Confidence 0 11123334444555666667778899 77888887776555444444333 322 11100 0001121 12344
Q ss_pred cccccCCCCCCCCCCCCchhHHHHHHHHHhhhh-hhhhhHhhhcccchhhccchhhHHHHHHHHHHHHHHHHHHH----H
Q 002413 343 SDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAV-TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLL----F 417 (926)
Q Consensus 343 ~~~~~~~~~g~~~~~g~~~~~f~~~~~i~f~a~-tG~e~~a~~s~E~knP~rsIP~a~~~ai~~~~v~Yil~~~~----~ 417 (926)
|+|..-. ....+..+++..||+. .|+-.....+.=.| .+.|++|-.+.....-+.+-++..++ +
T Consensus 233 Pd~s~L~----------~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~-~~~n~~~~a~~v~~~n~~~sllaG~~IF~~l 301 (519)
T 2a65_A 233 PDFEKLK----------DPGVWIAAVGQIFFTLSLGFGAIITYASYVR-KDQDIVLSGLTAATLNEKAEVILGGSISIPA 301 (519)
T ss_dssp CCTTSTT----------CHHHHHHHHHHHHHHHTTTSSHHHHHHTTSC-TTSCCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCHHHhC----------CHHHHHHHHHHHHHHhHHHHhHHhhhhcccC-CCcChHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543211 1235778889999865 35444444444333 46688887777766666655542111 1
Q ss_pred Hh---ccC-hhhh-ccc-hh------hhhcccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCC
Q 002413 418 GA---AAT-REEL-LTD-RL------LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDI 475 (926)
Q Consensus 418 ~~---~v~-~~~l-~~~-~~------~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~ 475 (926)
+. -.+ .++. ... +- ..+...-|++.+..+..++..+-+++++..+.--..-+.-.|..
T Consensus 302 gf~a~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~ 371 (519)
T 2a65_A 302 AVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL 371 (519)
T ss_dssp HHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhcCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 11 112 1111 111 11 11112234556666666666666777777666666666666664
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=92.08 E-value=21 Score=41.19 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=27.4
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCC
Q 002413 435 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP 477 (926)
Q Consensus 435 ~~~~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP 477 (926)
.......-++.++++.+..|++.+.+.+.+-+ +++|=+-|
T Consensus 316 ~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~---~~~Diy~~ 355 (530)
T 3dh4_A 316 FLPVGVKGVVFAALAAAIVSSLASMLNSTATI---FTMDIYKE 355 (530)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTCCC
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHhHHHHH
Confidence 33444566777888888888888888877765 35665554
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=88.02 E-value=43 Score=39.10 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhCCCCC
Q 002413 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP 477 (926)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~l~alArDg~lP 477 (926)
.+..-++.++++.+..|++.+.+.+.+-++ ++|=+-|
T Consensus 348 ~~l~gl~~a~llaA~mST~~s~l~a~st~~---~~Diy~~ 384 (593)
T 2xq2_A 348 VGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIYKE 384 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 334556777777788888777777766543 4554433
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.57 E-value=26 Score=21.72 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHcc
Q 002413 772 DAEVLKADVKKFLYDLR 788 (926)
Q Consensus 772 ~~~~~~~~l~~lL~~~R 788 (926)
+.|..+++++++.+++|
T Consensus 9 eledlqerlrklrkklr 25 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46777888888888887
No 10
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=27.52 E-value=20 Score=31.30 Aligned_cols=17 Identities=12% Similarity=0.690 Sum_probs=14.6
Q ss_pred CccEEEeeccchhcccc
Q 002413 673 KPNIVVMRYPEIWRREN 689 (926)
Q Consensus 673 ~PNtv~lg~~~~w~~~~ 689 (926)
|+..+.++||..|++.+
T Consensus 5 R~HV~~l~FP~ewKt~D 21 (101)
T 3ctr_A 5 SDHVLHVTFPKEWKTSD 21 (101)
T ss_dssp EEEEEEEECCTTCCHHH
T ss_pred CCeEEEEeCChhhhhHH
Confidence 68889999999998754
No 11
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=25.85 E-value=27 Score=30.39 Aligned_cols=19 Identities=11% Similarity=0.611 Sum_probs=15.6
Q ss_pred CCCccEEEeeccchhcccc
Q 002413 671 NLKPNIVVMRYPEIWRREN 689 (926)
Q Consensus 671 ~l~PNtv~lg~~~~w~~~~ 689 (926)
+=|+..+.++||..|++.+
T Consensus 13 p~r~HVf~l~FP~ewKt~D 31 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSD 31 (100)
T ss_dssp CCCCSEEEEECCTTCCHHH
T ss_pred CCCCeEEEEeCChhhhhHH
Confidence 3478899999999998764
No 12
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=25.76 E-value=5e+02 Score=25.74 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=55.0
Q ss_pred CCCccEEEeeccchhcccccCCcchhHHH-HHHHH-HHhcccEEEEecCCCCcccccccCCceeeEEEecCCchHHHHHH
Q 002413 671 NLKPNIVVMRYPEIWRRENLTEIPATFVG-IINDC-IVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQ 748 (926)
Q Consensus 671 ~l~PNtv~lg~~~~w~~~~~~~~~~~~~~-~i~~~-~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~lll~~ 748 (926)
..+...++||-..... .... .+++ +.+.+ ...++.|+++|.-.. ..++|=+=|...+... -.+.+
T Consensus 107 ~~~~dliV~G~~g~~~--~~~~---~~~Gs~~~~v~~~a~~PVlvv~~~~~-------~~~~ilv~~d~s~~~~-~al~~ 173 (268)
T 3ab8_A 107 ARAADLLVLGRSGEAH--GDGF---GGLGSTADRVLRASPVPVLLAPGEPV-------ELEGALLGYDASESAV-RALHA 173 (268)
T ss_dssp HTTCSEEEEESSCTTS--CTTC---CSCCHHHHHHHHHCSSCEEEECSSCC-------CCCEEEEECCSCHHHH-HHHHH
T ss_pred ccCCCEEEEeccCCCc--cccc---cccchhHHHHHHhCCCCEEEECCCCC-------CCCEEEEEECCCHHHH-HHHHH
Confidence 5679999999764210 1111 0111 11222 236789999884211 1234434332111111 12333
Q ss_pred HhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccCcEEEEE
Q 002413 749 LLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVI 796 (926)
Q Consensus 749 lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~aev~vv 796 (926)
....-+. .+++++++.+.+..++.++..+++.+.|.+.-++.+..+.
T Consensus 174 a~~la~~-~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 220 (268)
T 3ab8_A 174 LAPLARA-LGLGVRVVSVHEDPARAEAWALEAEAYLRDHGVEASALVL 220 (268)
T ss_dssp HHHHHHH-HTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhhhc-CCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 2222111 2689999998876544444445556666655555555443
No 13
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=22.20 E-value=6.2e+02 Score=25.53 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHhcCceeEEEEEEEeCCCC---------Cch-HHH-HHHHHHH---HHHHHhhcccceEEEEe-cCChH
Q 002413 593 HPKLADFANCMKKKGRGMSIFVSILDGDYH---------ECA-EDA-KTACKQL---ATYIDYKRCEGVAEIVV-APNMS 657 (926)
Q Consensus 593 ~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~---------~~~-~~~-~~~~~~~---~~~~~~~~~~~f~~~~~-a~~~~ 657 (926)
....+++|-.+.+....-+.+.+|+..+.. +.. ++. +++++.+ .+.++..+++.-...+. ..+..
T Consensus 35 s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~ 114 (294)
T 3loq_A 35 SFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPV 114 (294)
T ss_dssp GGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCCEECHH
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeeccCChh
Confidence 446778888887664444555677654321 000 111 1222233 33333333321110123 55676
Q ss_pred HHHHHHHHhhCCCCCCccEEEeeccchhcccccCCcchhHHH-HHHHH-HHhcccEEEEecCCCCcccccccCCceeeEE
Q 002413 658 EGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVG-IINDC-IVANKAVVIVKGLDEWPNEYQRQYGTIDLYW 735 (926)
Q Consensus 658 ~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~~~-~i~~~-~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW 735 (926)
+.+ ..+. .+...++||..... ...+.+++ ..+.+ ....+.|++++.-..+ ....++|=+=|
T Consensus 115 ~~I--~a~~-----~~~DliV~G~~g~~------~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~----~~~~~~Ilv~~ 177 (294)
T 3loq_A 115 VEI--IKAS-----ENYSFIAMGSRGAS------KFKKILLGSVSEGVLHDSKVPVYIFKHDMVV----NSLFDRVLVAY 177 (294)
T ss_dssp HHH--HHHH-----TTSSEEEEECCCCC------HHHHHHHCCHHHHHHHHCSSCEEEECCCTTT----TCTTSEEEEEC
T ss_pred Hhe--eecc-----CCCCEEEEcCCCCc------cccceeeccHHHHHHhcCCCCEEEecCcccc----CccCCEEEEEE
Confidence 666 3333 45899999986421 00011111 11222 2367889998853221 12234444444
Q ss_pred EecCCch--HHHHHHHhhcCCCcCCcceEEEEeecCchhHHHHHHHHHHHHHHcccCcEEEEE
Q 002413 736 IVRDGGL--MLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVI 796 (926)
Q Consensus 736 ~~~dGgL--~lll~~lL~~~~~W~~~klRvf~v~~~~~~~~~~~~~l~~lL~~~RI~aev~vv 796 (926)
||.= .-.+.+.+..-+. .+++|+++.+.+.+. .++..+++.+.|.+.-++.+..+.
T Consensus 178 ---d~s~~s~~al~~a~~la~~-~~~~l~ll~v~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~ 235 (294)
T 3loq_A 178 ---DFSKWADRALEYAKFVVKK-TGGELHIIHVSEDGD-KTADLRVMEEVIGAEGIEVHVHIE 235 (294)
T ss_dssp ---CSSHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSC-CHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---CCCHHHHHHHHHHHHHhhh-cCCEEEEEEEccCch-HHHHHHHHHHHHHHcCCcEEEEEe
Confidence 3321 1112222222211 268999999887654 344455666677766666665544
No 14
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=21.36 E-value=6.4e+02 Score=25.39 Aligned_cols=182 Identities=9% Similarity=0.015 Sum_probs=91.4
Q ss_pred chhHHHHHHHHHhcCceeEEEEEEEeCCCCCchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHhhCCCCC
Q 002413 593 HPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNL 672 (926)
Q Consensus 593 ~~~L~~f~~~l~k~g~gl~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l 672 (926)
....+++|-.+.+....-+.+.|+... .+. ++..++..+.++..+++.-..+....+..+.+....+..+
T Consensus 20 s~~al~~A~~la~~~~a~l~ll~v~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~---- 89 (290)
T 3mt0_A 20 EGLALKRAQLIAGVTQSHLHLLVCEKR--RDH----SAALNDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEG---- 89 (290)
T ss_dssp CCHHHHHHHHHHHHHCCEEEEEEECSS--SCC----HHHHHHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHT----
T ss_pred chHHHHHHHHHHHhcCCeEEEEEeeCc--HHH----HHHHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcC----
Confidence 346778887776543333445566641 111 1222333344445555533334435677777777766543
Q ss_pred CccEEEeeccchhcccccCCcchhHHHHHHHHHHhcccEEEEecCCCCcccccccCCceeeEEEecCCc------hHHHH
Q 002413 673 KPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGG------LMLLL 746 (926)
Q Consensus 673 ~PNtv~lg~~~~w~~~~~~~~~~~~~~~i~~~~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGg------L~lll 746 (926)
...++||....-.-... ..-..--.+++ ...+.|++++.-..+ ..++|=+=|...+.. =.-.+
T Consensus 90 -~dliV~G~~~~~~~~~~-~~gs~~~~vl~---~~~~PVlvv~~~~~~------~~~~Ilva~D~s~~~~~~~~~s~~al 158 (290)
T 3mt0_A 90 -CGLIIKQHFPDNPLKKA-ILTPDDWKLLR---FAPCPVLMTKTARPW------TGGKILAAVDVGNNDGEHRSLHAGII 158 (290)
T ss_dssp -CSEEEEECCCSCTTSTT-SCCHHHHHHHH---HCSSCEEEECCCSCS------TTCEEEEEECTTCCSHHHHHHHHHHH
T ss_pred -CCEEEEecccCCchhhc-ccCHHHHHHHh---cCCCCEEEecCCCCC------CCCeEEEEECCCCcchhhhHHHHHHH
Confidence 78999998743110100 01111112222 368899999842221 234555555433320 11223
Q ss_pred HHHhhcCCCcCCcceEEEEeecCch-------------hHHHHHHHHHHHHHHcccC-cEEEEE
Q 002413 747 SQLLLTKESFESCKIQVFCIAEEDS-------------DAEVLKADVKKFLYDLRMQ-AEVIVI 796 (926)
Q Consensus 747 ~~lL~~~~~W~~~klRvf~v~~~~~-------------~~~~~~~~l~~lL~~~RI~-aev~vv 796 (926)
.+.+..-+. .+++|+++.+.+... ..++.++.+++++.++-++ .+..+.
T Consensus 159 ~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~ 221 (290)
T 3mt0_A 159 SHAYDIAGL-AKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIE 221 (290)
T ss_dssp HHHHHHHHH-TTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEE
T ss_pred HHHHHHHHH-cCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEe
Confidence 333322222 269999998876421 1334566777788777664 344444
Done!