BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002414
(926 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 134 bits (338), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/121 (52%), Positives = 86/121 (71%)
Query: 466 VPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSF 525
VPLF+N+D + LD IC LKP L+ E+S++V EGD ++ MLF++RG+L S T GGR F
Sbjct: 11 VPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70
Query: 526 QSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELS 585
+ L GD+ G+EL++WALDP S LP S+RTV+A TEVEAF L++D L+ V S+
Sbjct: 71 YNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130
Query: 586 R 586
R
Sbjct: 131 R 131
Score = 134 bits (336), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/121 (53%), Positives = 90/121 (74%), Gaps = 4/121 (3%)
Query: 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG 754
++PLF+++D + LD IC LKP L+ +KS++ REG PV++ LFI++G+L+S+T++ G
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTD----G 65
Query: 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
GF+N + L GD CG+ELLTWALDP+S P+STRTV A TEVEAFAL D+LK V
Sbjct: 66 GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125
Query: 815 A 815
A
Sbjct: 126 A 126
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D++QK+ +Y ++ + + K D EN+L+ L L+ I +
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRY-QGKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
+PLF N D + + S L+ ++ +I+ EG M F+ G T
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSK 135
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M L+ G Y+GE + L RT VRA T + L DN
Sbjct: 136 EMK------LTDGSYFGEICL-----------LTKGRRTASVRADTYCRLYSLSVDNFNE 178
Query: 580 VTSE 583
V E
Sbjct: 179 VLEE 182
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + LK ++ +I+ EG M F+ G + T
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 135
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M LS G Y+GE + L RT VRA T + L DN
Sbjct: 136 EMK------LSDGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 178
Query: 580 VTSE 583
V E
Sbjct: 179 VLEE 182
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG- 754
MPLF + D + + LK +++ +I REG K FI G + +T N
Sbjct: 80 MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKL 139
Query: 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
+ G +F G++C LLT T +V A T ++L+ D+ V
Sbjct: 140 SDGSYF-------GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 179
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 26/198 (13%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + LK ++ +I+ EG M F+ G + T
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 134
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M LS G Y+GE IS L RT VRA T + L DN
Sbjct: 135 EMK------LSDGSYFGE--IS---------LLTRGRRTASVRADTYSRLYSLSVDNFNE 177
Query: 580 VTSELSRRLCYKQLHHAF 597
V E Y + AF
Sbjct: 178 VLEE------YPMMRRAF 189
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 687 RKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSM 746
RK++ + MPLF + D + + LK +++ +I REG K FI G + +
Sbjct: 73 RKLVAS---MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVL 129
Query: 747 TSNN 750
T N
Sbjct: 130 TKGN 133
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + LK ++ +I+ EG M F+ G + T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 132
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M LS G Y+GE + L RT VRA T + L DN
Sbjct: 133 EMK------LSDGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 175
Query: 580 VTSE 583
V E
Sbjct: 176 VLEE 179
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG- 754
MPLF + D + + LK +++ +I REG K FI G + +T N
Sbjct: 77 MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKL 136
Query: 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
+ G +F G++C LLT T +V A T ++L+ D+ V
Sbjct: 137 SDGSYF-------GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 176
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + LK ++ +I+ EG M F+ G + T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 132
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M LS G Y+GE + L RT VRA T + L DN
Sbjct: 133 EMK------LSDGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 175
Query: 580 VTSE 583
V E
Sbjct: 176 VLEE 179
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG- 754
MPLF + D + + LK +++ +I REG K FI G + +T N
Sbjct: 77 MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKL 136
Query: 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
+ G +F G++C LLT T +V A T ++L+ D+ V
Sbjct: 137 SDGSYF-------GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 176
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + LK ++ +I+ EG M F+ G + T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 132
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M LS G Y+GE + L RT VRA T + L DN
Sbjct: 133 EMK------LSDGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 175
Query: 580 VTSE 583
V E
Sbjct: 176 VLEE 179
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG- 754
MPLF + D + + LK +++ +I REG K FI G + +T N
Sbjct: 77 MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKL 136
Query: 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
+ G +F G++C LLT T +V A T ++L+ D+ V
Sbjct: 137 SDGSYF-------GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 176
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + LK ++ +I+ EG M F+ G + T
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 130
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
M LS G Y+GE + L RT VRA T + L DN
Sbjct: 131 EMK------LSDGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 173
Query: 580 VTSE 583
V E
Sbjct: 174 VLEE 177
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 21/120 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG- 754
MPLF + D + + LK +++ +I REG K FI G + +T N
Sbjct: 75 MPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKL 134
Query: 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
+ G +F G++C LLT T +V A T ++L+ D+ V
Sbjct: 135 SDGSYF-------GEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 174
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +Q++ +Y ++ + + K D E++L L L+ I +
Sbjct: 17 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNXRK 75
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + L+ ++ +I+ EG M F+ G + S G
Sbjct: 76 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 134
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
+ + L+ G Y+GE + L RT VRA T + L DN
Sbjct: 135 KET-----KLADGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 178
Query: 580 VTSE 583
V E
Sbjct: 179 VLEE 182
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
MPLF + D + + L+ +++ +I REG K FI G + +T N
Sbjct: 80 MPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKL 139
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
G + G++C LLT T +V A T ++L+ D+ V
Sbjct: 140 ADGSY------FGEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 179
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +Q++ +Y ++ + + K D E++L L L+ I +
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRK 69
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + L+ ++ +I+ EG M F+ G + S G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
+ + L+ G Y+GE + L RT VRA T + L DN
Sbjct: 129 KET-----KLADGSYFGEICL-----------LTRGRRTARVRADTYCRLYSLSVDNFNE 172
Query: 580 VTSE 583
V E
Sbjct: 173 VLEE 176
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 19/119 (15%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
MPLF + D + + L+ +++ +I REG K FI G + +T N
Sbjct: 74 MPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKL 133
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
G + G++C LLT T V A T ++L+ D+ V
Sbjct: 134 ADGSY------FGEIC---LLTRG----------RRTARVRADTYCRLYSLSVDNFNEV 173
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+M F KL D +Q++ +Y ++ + + K D E++L L L+ I +
Sbjct: 11 KYKQVEQYMSFHKLPPDTRQRIHDYYEHRY-QGKMFDEESILGELSEPLREEIINFNCRK 69
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
++PLF N D + + + L+ ++ +I+ EG M F+ G + S G
Sbjct: 70 LVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 128
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
+ + L+ G Y+GE + L RT VRA T + L DN
Sbjct: 129 KET-----KLADGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 172
Query: 580 VTSE 583
V E
Sbjct: 173 VLEE 176
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
MPLF + D + + L+ +++ +I REG K FI G + +T N
Sbjct: 74 MPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKL 133
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAV 814
G + G++C LLT T +V A T ++L+ D+ V
Sbjct: 134 ADGSY------FGEIC---LLTRG----------RRTASVRADTYCRLYSLSVDNFNEV 173
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 20/184 (10%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
K +++EQ+ F KL D +QK+ +Y ++ + + K D +++L L L+ I +
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRY-QGKXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521
+ PLF N D + + LK ++ +I+ EG F+ G + + + G
Sbjct: 73 LVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVV--SVLTKG 130
Query: 522 RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRT--VRAATEVEAFVLMSDNLRA 579
+ LS G Y+GE + L RT VRA T + L DN
Sbjct: 131 NKEXK----LSDGSYFGEICL-----------LTRGRRTASVRADTYCRLYSLSVDNFNE 175
Query: 580 VTSE 583
V E
Sbjct: 176 VLEE 179
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 402 KGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSXXXXX 461
+ ++++ ++ +L + L Q++ Q W G+DV LL + P +L+ +I +
Sbjct: 17 RTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADI-AMHLNK 75
Query: 462 XXXNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKL 513
+PLF++ L + +K A ++ +GD + + FV G +
Sbjct: 76 ELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 33/142 (23%)
Query: 636 QGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMTDFK 695
Q W+ GI S +P A +A N+ LL +
Sbjct: 43 QTTWSVNNGIDVSELLKDFPDELRAD--IAMHLNKELL---------------------Q 79
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLF+S L + + +K ++ R+G + F+ G ++ + N +
Sbjct: 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDNTV---- 135
Query: 756 LGGFFNLAHLGTGDLCGEELLT 777
LA LG GDL G + LT
Sbjct: 136 ------LAILGKGDLIGSDSLT 151
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 233 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 292
Query: 756 LGGFFNLAHLGTGD 769
G FF L +G+
Sbjct: 293 -GAFFGEMALISGE 305
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
+FQ ++ + + L+PV + + +F EG P D+ I+ GK+ I
Sbjct: 35 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV------KIGRRAPD 88
Query: 758 GFFN-LAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKA 813
G N L +G D+ GE S F P T + TEV A ++ D L++
Sbjct: 89 GRENLLTIMGPSDMFGE---------LSIFDPGPRTSSATTITEVRAVSMDRDALRS 136
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
+FQ ++ + + L+PV + + +F EG P D+ I+ GK+ I
Sbjct: 35 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV------KIGRRAPD 88
Query: 758 GFFNLAHL-GTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKA 813
G NL + G D+ GE S F P T + TEV A ++ D L++
Sbjct: 89 GRENLLTIXGPSDMFGE---------LSIFDPGPRTSSATTITEVRAVSMDRDALRS 136
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
+FQ +D ++++ ++ V + + + IF EG P D+ I GK+ L
Sbjct: 33 IFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDGRENL- 91
Query: 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
L +G D+ GE S F P T + V TEV A + +D L+
Sbjct: 92 ----LTIMGPSDMFGE---------LSIFDPGPRTSSAVCVTEVHAATMNSDMLR 133
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
+FQ ++ + + L+PV + + +F EG P D+ I+ GK+ I
Sbjct: 13 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV------KIGRRAPD 66
Query: 758 GFFNLAH-LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKA 813
G NL +G D+ GE S F P T + TEV A ++ D L++
Sbjct: 67 GRENLLTIMGPSDMFGE---------LSIFDPGPRTSSATTITEVRAVSMDRDALRS 114
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
+FQ ++ + + L+PV + + +F EG P D+ I+ GK+ I
Sbjct: 11 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV------KIGRRAPD 64
Query: 758 GFFNLAH-LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKA 813
G NL +G D+ GE S F P T + TEV A ++ D L++
Sbjct: 65 GRENLLTIMGPSDMFGE---------LSIFDPGPRTSSATTITEVRAVSMDRDALRS 112
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 37.0 bits (84), Expect = 0.057, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757
+FQ ++ + + L+PV + + +F EG P D+ I+ GK+ I
Sbjct: 10 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKV------KIGRRAPD 63
Query: 758 GFFNLAH-LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKA 813
G NL +G D+ GE S F P T + TEV A ++ D L++
Sbjct: 64 GRENLLTIMGPSDMFGE---------LSIFDPGPRTSSATTITEVRAVSMDRDALRS 111
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 36.6 bits (83), Expect = 0.067, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 18 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 77
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
G FF L +G +P+S+ TV A T V +L + D +
Sbjct: 78 -GAFFGEMALISG------------EPESA--------TVSAATTVSLLSLHSADFQ 113
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 16 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 75
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
G FF L +G +P+S+ TV A T V +L + D +
Sbjct: 76 -GAFFGEMALISG------------EPRSA--------TVSAATTVSLLSLHSADFQ 111
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 16 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 75
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
G FF L +G +P+S+ TV A T V +L + D +
Sbjct: 76 -GAFFGEMALISG------------EPRSA--------TVSAATTVSLLSLHSADFQ 111
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 36.2 bits (82), Expect = 0.090, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 20 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 79
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
G FF L +G +P+S+ TV A T V +L + D +
Sbjct: 80 -GAFFGEMALISG------------EPRSA--------TVSAATTVSLLSLHSADFQ 115
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 36.2 bits (82), Expect = 0.091, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 18 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 77
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
G FF L +G +P+S+ TV A T V +L + D +
Sbjct: 78 -GAFFGEMALISG------------EPRSA--------TVSAATTVSLLSLHSADFQ 113
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+PLFQ L L +I L+ + I R G P D+ F+++G + T N + G
Sbjct: 18 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPVELGP 77
Query: 756 LGGFFNLAHLGTGD 769
G FF L +G+
Sbjct: 78 -GAFFGEMALISGE 90
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 697 PLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLD-SMTSNNINGGT 755
PLF +LD + ++ V + +F EG P D+ + +GK+ TS +
Sbjct: 11 PLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPD----- 65
Query: 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLK 812
G LA +G +L GE S F P T T A TEV+ AL DL+
Sbjct: 66 -GRENXLAVVGPSELIGE---------LSLFDPGPRTATGTALTEVKLLALGHGDLQ 112
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+P FQSL + L + L+ YE +I R+G D I +GK++ ++ N
Sbjct: 162 VPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP 221
Query: 756 LGGFFNLAHLGTGDLCGEELL 776
+ L LG GD GE+ L
Sbjct: 222 V----FLRTLGKGDWFGEKAL 238
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 465 NVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKL 513
+VP FQ+L + L + L+ Y +I+ +G R D + +GK+
Sbjct: 161 SVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 26/131 (19%)
Query: 475 KTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV----GGRMSFQSGFY 530
K LD + ++ Y +S I+ GDR + + F+++G S T++ GR Y
Sbjct: 4 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKG---SVTILIEDDDGREMIIG--Y 58
Query: 531 LSAGDYYGE-----------ELISWALDPNSSHYLPISSRTVRAATEVEAFVL------M 573
L++GD++GE E +W IS R ++ ++ +L M
Sbjct: 59 LNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQM 118
Query: 574 SDNLRAVTSEL 584
+D LR T ++
Sbjct: 119 ADRLRKTTRKV 129
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755
+P F D+ + + L+ +++ ++ +EG D+ FI QG +D + S+ + +
Sbjct: 76 VPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATS 135
Query: 756 L--GGFFNLAHLGTGDLC 771
L G +F G++C
Sbjct: 136 LSDGSYF-------GEIC 146
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 635 LQGEWAAGGGITSSLG--ATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLM- 691
+ EWA G S G A IY + AA + A++N L R ++R++LM
Sbjct: 91 VNNEWATSVGEGGSFGELALIYGTPRAAT--VKAKTNVKLWGID------RDSYRRILMG 142
Query: 692 ---------TDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQ 740
+F K+ + +SLD + L+PV +E I +G P D+ I++
Sbjct: 143 STLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILE 202
Query: 741 GKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGE 773
G + + N F + LG D GE
Sbjct: 203 GSAAVLQRRSEN----EEFVEVGRLGPSDYFGE 231
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 635 LQGEWAAGGGITSSLG--ATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLM- 691
+ EWA G S G A IY + AA + A++N L R ++R++LM
Sbjct: 93 VNNEWATSVGEGGSFGELALIYGTPRAAT--VKAKTNVKLWGID------RDSYRRILMG 144
Query: 692 ---------TDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQ 740
+F K+ + +SLD + L+PV +E I +G P D+ I++
Sbjct: 145 STLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILE 204
Query: 741 GKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGE 773
G + + N F + LG D GE
Sbjct: 205 GSAAVLQRRSEN----EEFVEVGRLGPSDYFGE 233
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 635 LQGEWAAGGGITSSLG--ATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLM- 691
+ EWA G S G A IY + AA + A++N L R ++R++LM
Sbjct: 95 VNNEWATSVGEGGSFGELALIYGTPRAAT--VKAKTNVKLWGID------RDSYRRILMG 146
Query: 692 ---------TDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQ 740
+F K+ + +SLD + L+PV +E I +G P D+ I++
Sbjct: 147 STLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILE 206
Query: 741 GKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGE 773
G + + N F + LG D GE
Sbjct: 207 GSAAVLQRRSEN----EEFVEVGRLGPSDYFGE 235
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 489 YAEESHIVLEGDRIDGMLFVMRGKLWSATMV----GGRMSFQSGFYLSAGDYYGE----- 539
Y +S ++ +G++ + + ++++G + A ++ G M FYL+ GD+ GE
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSV--AVLIKDEEGKEMIL---FYLNQGDFIGELGLFE 78
Query: 540 ---ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRL 588
E +W + IS + R +V +LM ++++++RRL
Sbjct: 79 EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR-----LSAQMARRL 125
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 696 MPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLD----SMTSNNI 751
+PLF+SL+ I + +Y+ I +G D I G++ S T +N
Sbjct: 165 VPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILIRSKTKSNK 224
Query: 752 NGGTLGGFFNLAHLGTGDLCGE 773
NGG +AH G GE
Sbjct: 225 NGGNQE--VEIAHCHKGQYFGE 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,000,690
Number of Sequences: 62578
Number of extensions: 966378
Number of successful extensions: 2026
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1949
Number of HSP's gapped (non-prelim): 79
length of query: 926
length of database: 14,973,337
effective HSP length: 108
effective length of query: 818
effective length of database: 8,214,913
effective search space: 6719798834
effective search space used: 6719798834
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)