Query 002414
Match_columns 926
No_of_seqs 754 out of 4741
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 23:28:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2E-104 4E-109 919.3 49.3 571 67-924 64-639 (727)
2 PLN03192 Voltage-dependent pot 100.0 1.1E-65 2.3E-70 636.3 50.3 436 66-584 47-486 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 1E-63 2.2E-68 538.3 28.0 451 67-584 204-658 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 5.4E-62 1.2E-66 523.1 37.8 418 85-584 4-423 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.6E-56 5.7E-61 483.5 28.8 426 70-598 217-649 (815)
6 KOG0614 cGMP-dependent protein 99.9 1.4E-27 3.1E-32 258.2 14.1 250 453-827 146-396 (732)
7 KOG1113 cAMP-dependent protein 99.9 3.6E-25 7.8E-30 231.4 15.8 234 460-823 121-354 (368)
8 KOG0498 K+-channel ERG and rel 99.6 6.4E-15 1.4E-19 173.1 16.2 149 528-685 484-640 (727)
9 PRK09392 ftrB transcriptional 99.6 8.8E-14 1.9E-18 148.0 18.4 136 688-841 7-142 (236)
10 KOG3713 Voltage-gated K+ chann 99.5 3.2E-13 6.9E-18 148.9 16.7 193 119-394 240-435 (477)
11 PRK11753 DNA-binding transcrip 99.5 2E-12 4.3E-17 135.1 18.8 120 700-832 6-125 (211)
12 PRK09392 ftrB transcriptional 99.5 2.1E-12 4.6E-17 137.4 18.2 114 460-584 6-119 (236)
13 KOG2968 Predicted esterase of 99.4 1.7E-12 3.6E-17 149.5 16.5 215 491-833 393-613 (1158)
14 PRK11161 fumarate/nitrate redu 99.4 3.6E-12 7.7E-17 135.6 16.4 123 695-832 17-140 (235)
15 PLN03192 Voltage-dependent pot 99.4 2.7E-12 5.8E-17 160.2 16.7 139 680-833 361-501 (823)
16 cd00038 CAP_ED effector domain 99.4 8.2E-12 1.8E-16 115.7 14.0 114 698-825 1-114 (115)
17 PF00520 Ion_trans: Ion transp 99.4 2.4E-12 5.3E-17 132.3 10.3 192 123-385 1-200 (200)
18 smart00100 cNMP Cyclic nucleot 99.3 2.2E-11 4.9E-16 113.4 14.8 118 698-827 1-118 (120)
19 COG0664 Crp cAMP-binding prote 99.3 4.4E-11 9.6E-16 124.5 18.1 126 695-834 4-129 (214)
20 PF00027 cNMP_binding: Cyclic 99.3 1.4E-11 3E-16 109.7 11.5 90 717-820 2-91 (91)
21 PRK10402 DNA-binding transcrip 99.3 3.4E-11 7.4E-16 127.2 15.6 109 709-831 26-134 (226)
22 KOG0500 Cyclic nucleotide-gate 99.3 6.7E-11 1.4E-15 129.5 16.9 123 695-828 311-433 (536)
23 PRK11753 DNA-binding transcrip 99.3 1.5E-10 3.2E-15 120.9 18.9 110 470-595 6-116 (211)
24 KOG0614 cGMP-dependent protein 99.3 6.3E-12 1.4E-16 137.7 7.1 118 458-584 269-387 (732)
25 KOG1113 cAMP-dependent protein 99.3 1.5E-11 3.2E-16 129.9 9.6 152 677-850 111-264 (368)
26 PRK13918 CRP/FNR family transc 99.2 7.5E-11 1.6E-15 122.3 14.2 104 713-837 5-110 (202)
27 PRK09391 fixK transcriptional 99.2 1.2E-10 2.6E-15 123.3 14.5 109 709-834 33-141 (230)
28 KOG0499 Cyclic nucleotide-gate 99.2 3.5E-11 7.6E-16 133.2 10.5 116 695-823 531-646 (815)
29 cd00038 CAP_ED effector domain 99.2 1.8E-10 3.9E-15 106.6 13.9 107 468-584 1-107 (115)
30 TIGR03697 NtcA_cyano global ni 99.2 1.1E-10 2.4E-15 120.0 13.2 100 722-833 1-100 (193)
31 PLN02868 acyl-CoA thioesterase 99.2 1.6E-10 3.4E-15 132.9 14.4 114 685-818 5-118 (413)
32 KOG2968 Predicted esterase of 99.2 3.9E-10 8.4E-15 130.5 16.9 104 478-584 109-212 (1158)
33 PF00027 cNMP_binding: Cyclic 99.2 2.5E-10 5.4E-15 101.5 11.3 88 487-584 2-89 (91)
34 PRK11161 fumarate/nitrate redu 99.2 8.2E-10 1.8E-14 117.4 17.1 110 463-584 15-126 (235)
35 smart00100 cNMP Cyclic nucleot 99.1 8.6E-10 1.9E-14 102.6 14.8 109 468-584 1-109 (120)
36 PRK10402 DNA-binding transcrip 99.1 5E-10 1.1E-14 118.3 14.6 96 478-584 25-121 (226)
37 KOG1545 Voltage-gated shaker-l 99.1 1.1E-11 2.4E-16 129.7 1.7 51 337-387 394-444 (507)
38 COG0664 Crp cAMP-binding prote 99.1 1.5E-09 3.2E-14 113.0 17.8 110 464-584 3-113 (214)
39 PLN02868 acyl-CoA thioesterase 99.0 1.9E-09 4.2E-14 124.0 14.8 112 460-584 7-118 (413)
40 COG2905 Predicted signal-trans 99.0 2.9E-09 6.2E-14 119.2 14.6 121 685-826 4-124 (610)
41 KOG1419 Voltage-gated K+ chann 99.0 2.1E-09 4.5E-14 119.0 12.4 91 332-429 265-355 (654)
42 COG2905 Predicted signal-trans 99.0 4.8E-09 1E-13 117.5 14.9 119 460-598 6-124 (610)
43 PRK09391 fixK transcriptional 99.0 1.1E-08 2.3E-13 108.4 15.0 94 478-584 32-125 (230)
44 PF07885 Ion_trans_2: Ion chan 98.9 5.3E-09 1.2E-13 90.8 10.2 56 335-390 23-78 (79)
45 TIGR03697 NtcA_cyano global ni 98.9 2.8E-08 6.1E-13 102.1 14.6 84 492-584 1-85 (193)
46 PRK13918 CRP/FNR family transc 98.8 8.9E-08 1.9E-12 99.2 15.7 83 483-577 5-90 (202)
47 KOG1420 Ca2+-activated K+ chan 98.7 1.2E-08 2.7E-13 112.4 5.2 131 333-471 285-418 (1103)
48 KOG0501 K+-channel KCNQ [Inorg 98.7 2E-08 4.3E-13 111.3 5.4 132 681-829 536-669 (971)
49 KOG4390 Voltage-gated A-type K 98.5 8.8E-09 1.9E-13 108.9 -3.4 54 336-389 356-413 (632)
50 KOG3542 cAMP-regulated guanine 98.4 8.3E-07 1.8E-11 99.8 9.5 315 447-818 23-391 (1283)
51 PRK10537 voltage-gated potassi 98.1 5E-05 1.1E-09 86.1 14.1 54 336-389 168-221 (393)
52 PF08412 Ion_trans_N: Ion tran 97.9 2.9E-06 6.3E-11 71.8 -0.1 46 55-102 20-71 (77)
53 PF01007 IRK: Inward rectifier 97.8 7.1E-05 1.5E-09 82.7 9.7 56 335-390 83-140 (336)
54 KOG3684 Ca2+-activated K+ chan 97.8 0.00052 1.1E-08 75.8 16.0 93 333-433 284-376 (489)
55 KOG1418 Tandem pore domain K+ 97.0 0.0012 2.6E-08 76.5 7.3 60 336-395 115-174 (433)
56 KOG3542 cAMP-regulated guanine 96.8 0.0016 3.5E-08 74.1 6.0 117 453-584 273-391 (1283)
57 PRK11832 putative DNA-binding 96.7 0.045 9.7E-07 55.9 14.9 107 706-846 14-121 (207)
58 PRK11832 putative DNA-binding 96.6 0.06 1.3E-06 55.0 14.9 95 476-584 14-109 (207)
59 PF04831 Popeye: Popeye protei 96.4 0.14 3.1E-06 49.1 14.8 110 702-825 15-126 (153)
60 PF04831 Popeye: Popeye protei 96.2 0.15 3.3E-06 48.9 13.8 112 471-598 14-127 (153)
61 KOG2302 T-type voltage-gated C 96.0 0.19 4E-06 60.5 16.3 83 70-178 1104-1201(1956)
62 KOG4404 Tandem pore domain K+ 95.4 0.071 1.5E-06 57.0 9.0 58 337-394 187-252 (350)
63 KOG3827 Inward rectifier K+ ch 95.3 0.054 1.2E-06 59.2 8.0 60 335-394 111-172 (400)
64 KOG4404 Tandem pore domain K+ 94.4 0.008 1.7E-07 63.9 -1.0 53 330-382 74-126 (350)
65 PLN03223 Polycystin cation cha 94.1 3.5 7.6E-05 52.5 19.9 25 117-141 1211-1235(1634)
66 KOG1418 Tandem pore domain K+ 91.1 0.055 1.2E-06 62.6 -0.6 48 335-382 241-296 (433)
67 KOG3193 K+ channel subunit [In 89.1 0.75 1.6E-05 52.1 6.2 38 337-374 218-255 (1087)
68 KOG2301 Voltage-gated Ca2+ cha 82.8 8.4 0.00018 51.2 11.9 47 117-182 870-917 (1592)
69 COG4709 Predicted membrane pro 77.1 11 0.00023 37.8 7.8 73 401-475 5-81 (195)
70 PF00612 IQ: IQ calmodulin-bin 76.1 3.8 8.2E-05 25.5 2.9 17 841-857 3-19 (21)
71 PF07883 Cupin_2: Cupin domain 75.5 4.8 0.0001 33.3 4.5 44 487-537 3-47 (71)
72 KOG2301 Voltage-gated Ca2+ cha 75.2 40 0.00087 45.2 14.6 49 117-185 471-520 (1592)
73 KOG3676 Ca2+-permeable cation 67.7 1.2E+02 0.0027 37.2 15.1 75 349-424 601-682 (782)
74 TIGR00870 trp transient-recept 64.9 3.6E+02 0.0078 33.8 19.8 33 361-393 587-619 (743)
75 PF07883 Cupin_2: Cupin domain 64.7 11 0.00023 31.1 4.3 45 717-772 3-48 (71)
76 PRK13290 ectC L-ectoine syntha 63.6 32 0.00068 32.6 7.6 70 485-573 38-107 (125)
77 PF05899 Cupin_3: Protein of u 62.0 12 0.00026 31.8 4.1 42 489-538 14-55 (74)
78 TIGR03037 anthran_nbaC 3-hydro 61.8 33 0.00072 33.7 7.6 75 484-576 29-105 (159)
79 PF08006 DUF1700: Protein of u 58.6 48 0.001 33.4 8.6 56 400-457 4-63 (181)
80 smart00015 IQ Short calmodulin 57.8 14 0.00031 24.2 3.1 19 839-857 3-21 (26)
81 KOG2302 T-type voltage-gated C 54.2 5.7E+02 0.012 32.5 20.7 76 80-181 81-160 (1956)
82 PF08763 Ca_chan_IQ: Voltage g 52.2 19 0.00041 25.7 2.9 19 840-858 10-28 (35)
83 PF13314 DUF4083: Domain of un 52.0 75 0.0016 25.4 6.5 27 385-411 27-56 (58)
84 PF00060 Lig_chan: Ligand-gate 50.7 16 0.00035 35.1 3.5 76 332-413 40-115 (148)
85 TIGR03037 anthran_nbaC 3-hydro 45.1 54 0.0012 32.3 6.0 58 731-809 47-104 (159)
86 PF05899 Cupin_3: Protein of u 44.5 31 0.00067 29.2 3.8 30 733-772 26-55 (74)
87 COG1917 Uncharacterized conser 44.1 54 0.0012 30.9 5.9 50 484-540 45-95 (131)
88 smart00835 Cupin_1 Cupin. This 43.7 66 0.0014 31.1 6.6 55 713-772 31-86 (146)
89 PRK13290 ectC L-ectoine syntha 43.6 1.1E+02 0.0024 28.9 7.7 48 715-772 38-86 (125)
90 PF14377 DUF4414: Domain of un 43.1 39 0.00085 31.0 4.6 44 414-457 52-105 (108)
91 PRK13264 3-hydroxyanthranilate 37.0 61 0.0013 32.5 5.1 70 490-577 42-112 (177)
92 PRK13264 3-hydroxyanthranilate 35.0 88 0.0019 31.4 5.8 61 730-811 52-112 (177)
93 PF10011 DUF2254: Predicted me 34.6 1.9E+02 0.004 33.0 9.3 62 333-394 97-158 (371)
94 PF00520 Ion_trans: Ion transp 34.4 2.7E+02 0.0058 27.4 9.8 22 119-140 31-52 (200)
95 COG3837 Uncharacterized conser 33.7 97 0.0021 30.3 5.6 53 709-772 32-93 (161)
96 COG0662 {ManC} Mannose-6-phosp 33.3 1.1E+02 0.0024 28.9 6.1 48 483-537 37-85 (127)
97 KOG4440 NMDA selective glutama 32.9 78 0.0017 37.4 5.7 56 335-390 612-667 (993)
98 COG0662 {ManC} Mannose-6-phosp 31.8 1.1E+02 0.0024 28.8 5.9 48 713-771 37-85 (127)
99 COG3718 IolB Uncharacterized e 30.3 1.3E+02 0.0029 31.3 6.2 76 713-810 30-112 (270)
100 PF08016 PKD_channel: Polycyst 30.1 2.8E+02 0.006 32.1 10.0 22 159-180 231-253 (425)
101 smart00835 Cupin_1 Cupin. This 29.6 1.6E+02 0.0035 28.4 6.7 53 484-538 32-86 (146)
102 KOG2378 cAMP-regulated guanine 29.5 43 0.00094 38.0 2.9 43 533-584 1-44 (573)
103 KOG3609 Receptor-activated Ca2 29.4 7E+02 0.015 31.2 13.0 55 337-391 554-609 (822)
104 COG1917 Uncharacterized conser 29.3 98 0.0021 29.2 5.1 49 713-772 44-93 (131)
105 PHA03029 hypothetical protein; 29.1 2.7E+02 0.0058 23.4 6.6 39 360-398 2-40 (92)
106 PF07697 7TMR-HDED: 7TM-HD ext 28.9 1.7E+02 0.0038 30.1 7.4 58 445-503 147-207 (222)
107 PF12973 Cupin_7: ChrR Cupin-l 26.9 1.3E+02 0.0029 26.3 5.1 64 483-571 25-88 (91)
108 COG3837 Uncharacterized conser 25.3 1.4E+02 0.0031 29.2 5.2 48 486-540 46-95 (161)
109 PF02037 SAP: SAP domain; Int 24.6 1.4E+02 0.003 21.3 3.8 26 402-427 5-35 (35)
110 PF12973 Cupin_7: ChrR Cupin-l 24.5 1.1E+02 0.0024 26.8 4.2 64 713-805 25-88 (91)
111 COG3450 Predicted enzyme of th 23.1 1.9E+02 0.0041 27.0 5.4 43 487-537 50-92 (116)
112 PF01484 Col_cuticle_N: Nemato 22.7 3.6E+02 0.0078 20.7 6.8 42 365-406 8-49 (53)
113 PRK04190 glucose-6-phosphate i 22.7 3.2E+02 0.007 27.9 7.6 51 485-537 71-130 (191)
114 CHL00038 psbL photosystem II p 22.6 1E+02 0.0022 22.2 2.7 10 338-347 15-24 (38)
115 PRK04190 glucose-6-phosphate i 21.7 3.5E+02 0.0076 27.6 7.7 52 715-772 71-131 (191)
116 PRK06771 hypothetical protein; 21.3 4.2E+02 0.0092 23.6 6.8 38 378-415 14-51 (93)
117 PF02419 PsbL: PsbL protein; 20.2 1.5E+02 0.0032 21.4 3.0 8 339-346 15-22 (37)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-104 Score=919.30 Aligned_cols=571 Identities=40% Similarity=0.671 Sum_probs=492.7
Q ss_pred cccceeeCCCCcc---hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhcee
Q 002414 67 LYLKIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTK 143 (926)
Q Consensus 67 ~~~~~ii~P~s~~---Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~ 143 (926)
+...+||+|+|+| ||++++++|+|+++++|++++|+..++...| .|..+...+.+++.++|+||++||++|||||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 3337899999999 9999999999999999999999999999999 8889999999999999999999999999999
Q ss_pred EecCCCCCCCCeEeccHHHHHHHHhhhhhhhHHHhhccHhHHHhhhhhcccCCcchhhc-hhhhHHHHHHHHHHHHHhhh
Q 002414 144 SFAPCWEYPQRSLNEYAQEITRKYLLFFLPIDLLAILPLPQVVVSVIIQTTRGSKVLSG-LKLLKFFVIFQYVPRLIRIY 222 (926)
Q Consensus 144 y~~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~llr~~~l~~yl~rllri~ 222 (926)
|+++++ -++|.||++||+||+++||++|++|++|+++++.+.++ ++..... ...+..+.+++||+||.|++
T Consensus 142 yv~~~s----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~ 213 (727)
T KOG0498|consen 142 YVDPSS----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVI 213 (727)
T ss_pred EECCCC----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999974 37999999999999999999999999999999988765 1122222 22455566677799999999
Q ss_pred hhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCccccc
Q 002414 223 PLFTNVTRTSCKLDESKFFKAAFNLLLYMVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKD 302 (926)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~i~~ll~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~ 302 (926)
++++.+++..++..+++|++.+.++++|||++||.||+||++|+++...||.++ +|+..
T Consensus 214 ~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~ 272 (727)
T KOG0498|consen 214 PLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGS 272 (727)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------ccccc
Confidence 999999999999999999997788889999999999999999999999998754 34433
Q ss_pred cCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002414 303 FCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLI 382 (926)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~ii 382 (926)
.+...++.+..|+||+|. ++.+|++|+||+++||||+|||+++|+|..|++|+|++|++|+++||++|
T Consensus 273 l~~~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lI 340 (727)
T KOG0498|consen 273 LGRLLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLI 340 (727)
T ss_pred cccccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHH
Confidence 211111223336777654 45699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHH
Q 002414 383 GNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLEL 462 (926)
Q Consensus 383 g~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 462 (926)
|||++++|+++.+.++|+.|++++++||++++||++||+||++|++|+|+.++|+||+++|++||++||+||.+|+|.++
T Consensus 341 GNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~l 420 (727)
T KOG0498|consen 341 GNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDL 420 (727)
T ss_pred hhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhh
Q 002414 463 LLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELI 542 (926)
Q Consensus 463 L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~l 542 (926)
++++|+|+++|++++.+||.+++++.|+||++|++|||+.++||||.+|.+++.+.+|
T Consensus 421 v~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~---------------------- 478 (727)
T KOG0498|consen 421 VRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDG---------------------- 478 (727)
T ss_pred HhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccC----------------------
Confidence 9999999999999999999999998888888888888888888888888877654332
Q ss_pred hhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHH
Q 002414 543 SWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSIQAAWRRYKRR 622 (926)
Q Consensus 543 l~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~q~~~~~~~~~ 622 (926)
T Consensus 479 -------------------------------------------------------------------------------- 478 (727)
T KOG0498|consen 479 -------------------------------------------------------------------------------- 478 (727)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhhhccCCccccCC
Q 002414 623 NLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMTDFKMPLFQSL 702 (926)
Q Consensus 623 ~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~~~l~~plF~~l 702 (926)
T Consensus 479 -------------------------------------------------------------------------------- 478 (727)
T KOG0498|consen 479 -------------------------------------------------------------------------------- 478 (727)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCC
Q 002414 703 DAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDP 782 (926)
Q Consensus 703 ~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~ 782 (926)
|++.+.+.|+|||+|||++++|+++
T Consensus 479 ------------------------------------------------------g~~~~~~~L~~Gd~~GeEl~~~~~~- 503 (727)
T KOG0498|consen 479 ------------------------------------------------------GGFFVVAILGPGDFFGEELLTWCLD- 503 (727)
T ss_pred ------------------------------------------------------CceEEEEEecCCCccchHHHHHHhc-
Confidence 3444567788888888888888854
Q ss_pred CCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 783 QSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWAACSIQAAWSQYKLQKLQREKE 862 (926)
Q Consensus 783 ~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~r~~~~~~~~~~~ 862 (926)
. |+++||+|+|.|++++|+++||+++++++|++++++++|++|+||++||+||+|+||++|+||++|+...+..
T Consensus 504 -----~-p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~ 577 (727)
T KOG0498|consen 504 -----L-PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELA 577 (727)
T ss_pred -----C-CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhh
Confidence 2 4599999999999999999999999999999999999999999999999999999999999999999754443
Q ss_pred hhhhhhHHHhhcCCCCCCchhHHHHHhhhhhhccCcchh-hhccccCCCCCCCCCCCCCCCCc
Q 002414 863 NRVQLQDTLAKAGGSSPSSEATLFVSRLFATDAPRSGAR-KTRLLEKVPAVPNLKPVEPSTAE 924 (926)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 924 (926)
++.........+.+++..++++.+|++ +++|..++... ..+.......+..+||.||||.+
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~ 639 (727)
T KOG0498|consen 578 LEEEESAIRGDDRGSKSLLRAGILASR-FAANGRPPLHTAASRGSSDCALLLLQKPADPDFSD 639 (727)
T ss_pred hhcchhhhccccccchhhhhccccccc-ccccCCCccccccccCccccccccCCCCCCCCccc
Confidence 332222222356677788999999999 79998875432 22333334455678999999853
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.1e-65 Score=636.26 Aligned_cols=436 Identities=18% Similarity=0.266 Sum_probs=362.9
Q ss_pred ccccceeeCCCCcc---hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhce
Q 002414 66 MLYLKIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRT 142 (926)
Q Consensus 66 ~~~~~~ii~P~s~~---Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t 142 (926)
.+...++|+|++++ ||.+++++++|+++++|+.++|.. ......+.+++.++|++|++||+++|+|
T Consensus 47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~-----------~~~~~~~~~~d~i~~~~F~iDi~l~f~~ 115 (823)
T PLN03192 47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLN-----------ASPKRGLEIADNVVDLFFAVDIVLTFFV 115 (823)
T ss_pred cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeC-----------CCCCCCeeeHHHHHHHHHHHHHHhheeE
Confidence 45558999999998 999999999999999999876531 1122357789999999999999999999
Q ss_pred eEecCCCCCCCCeEeccHHHHHHHHhhhhhhhHHHhhccHhHHHhhhhhcccCCcchhhchhhhHHHHHHHHHHHHHhhh
Q 002414 143 KSFAPCWEYPQRSLNEYAQEITRKYLLFFLPIDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIY 222 (926)
Q Consensus 143 ~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l~~yl~rllri~ 222 (926)
||+++. .|.+|.||++|++||+++||++|++|++|++++..... . ........++|+++| +.|+.|+.
T Consensus 116 ay~d~~----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~---~~~~~~~~~~l~llr----l~Rl~ri~ 183 (823)
T PLN03192 116 AYIDPR----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-G---TVKLNLSYSLLGLLR----FWRLRRVK 183 (823)
T ss_pred EEEeCC----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-C---CccchHHHHHHHHHH----HHHHHHHH
Confidence 999975 68999999999999999999999999999987754321 1 111111223344333 44444444
Q ss_pred hhhhhhhccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCcccc
Q 002414 223 PLFTNVTRTSCKLDESKFFKAAFNLLLY-MVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVK 301 (926)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~~~~i~~ll~~-~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~ 301 (926)
+++..+++.. ........+.+++++ ++++||+||+||+++.. + ...+.+|+.
T Consensus 184 ~~~~~le~~~---~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~-------------------~-----~~~~~~Wi~ 236 (823)
T PLN03192 184 QLFTRLEKDI---RFSYFWIRCARLLSVTLFLVHCAGCLYYLIADR-------------------Y-----PHQGKTWIG 236 (823)
T ss_pred HHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------c-----CCCCCchHH
Confidence 4444444322 222223456666655 45799999999999821 0 123568985
Q ss_pred ccCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHH
Q 002414 302 DFCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYL 381 (926)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~i 381 (926)
.... + ..+.+++.+|++|+||+++|||||||||++|.|..|++|++++|++|+++|||+
T Consensus 237 ~~~~---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ 295 (823)
T PLN03192 237 AVIP---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYL 295 (823)
T ss_pred Hhhh---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3110 0 236789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHH
Q 002414 382 IGNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLE 461 (926)
Q Consensus 382 ig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~ 461 (926)
||+|++++.+.+.+..+|+++++.+++||++++||++||+||++|+++.|+. ...+++++++.||+.||.++..+++.+
T Consensus 296 ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~ 374 (823)
T PLN03192 296 IGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLP 374 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 568899999999999999999999999
Q ss_pred HhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhh
Q 002414 462 LLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEEL 541 (926)
Q Consensus 462 ~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ 541 (926)
.++++++|++++++++.+++..++.+.|+|||.|+.|||.++++|||.+|+|+++..+++.+. ++..+++|++|||.+
T Consensus 375 ~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~--~l~~l~~Gd~FGE~~ 452 (823)
T PLN03192 375 VVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKER--VVGTLGCGDIFGEVG 452 (823)
T ss_pred HHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcce--eeEEccCCCEecchH
Confidence 999999999999999999999999999999999999999999999999999999876555433 378999999999998
Q ss_pred hhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 542 ISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 542 ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++. .. ++++|++|.++|+++.|++++|.++++++
T Consensus 453 ~l~---~~------p~~~t~ra~~~s~ll~l~~~~f~~ll~~~ 486 (823)
T PLN03192 453 ALC---CR------PQSFTFRTKTLSQLLRLKTSTLIEAMQTR 486 (823)
T ss_pred Hhc---CC------CCCCeEEEcccEEEEEEEHHHHHHHHHHh
Confidence 852 22 37899999999999999999999999999
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-63 Score=538.29 Aligned_cols=451 Identities=18% Similarity=0.274 Sum_probs=376.8
Q ss_pred cccceeeCCCCcc---hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhcee
Q 002414 67 LYLKIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTK 143 (926)
Q Consensus 67 ~~~~~ii~P~s~~---Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~ 143 (926)
|-.+.||..++.| ||++++++.+|+++++||.++|--- ......|.+++.++|++|++||++||+|.
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk----------~~~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNK----------QRNNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccc----------ccCceeEEEecchhhhhhhhhhhhhccee
Confidence 3337799999999 9999999999999999999876422 12345788999999999999999999999
Q ss_pred EecCCCCCCCCeEeccHHHHHHHHhhhhhhhHHHhhccHhHHHhhhhhcccCCcchhhchhhhHHHHHHHHHHHHHhhhh
Q 002414 144 SFAPCWEYPQRSLNEYAQEITRKYLLFFLPIDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYP 223 (926)
Q Consensus 144 y~~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l~~yl~rllri~~ 223 (926)
|+.| .|++|.||+.|..||+|+||+||++|++|++++..+-.. +...-.....|+ +.||+|+.|
T Consensus 274 FVGP-----gGEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~----degI~SLFSaLK-------VVRLLRLGR 337 (971)
T KOG0501|consen 274 FVGP-----GGEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERD----DEGIGSLFSALK-------VVRLLRLGR 337 (971)
T ss_pred eecC-----CCceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcc----cccHHHHHHHHH-------HHHHHHHHH
Confidence 9998 699999999999999999999999999999987764321 222333344555 667777777
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCcccccc
Q 002414 224 LFTNVTRTSCKLDESKFFKAAFNLLLYMVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKDF 303 (926)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~i~~ll~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~~ 303 (926)
+.+++.++.++ ..+..++.+..|++++||+||+||.||-.+- ...-.+....++|+...
T Consensus 338 VaRKLD~YlEY----GAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~~~~~n~i~~dsWL~kL 396 (971)
T KOG0501|consen 338 VARKLDHYLEY----GAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------RDEMDNTIQPDSWLWKL 396 (971)
T ss_pred HHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------ecccccccccchHHHHH
Confidence 77888776532 1222233334578999999999999993210 00011123457898654
Q ss_pred CCCCCCCCCCCcchhhHhhhhcCc-cccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002414 304 CPTKPQNTSIFDFGIFQDALQSGI-VEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLI 382 (926)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~ii 382 (926)
.. ..+.+|+|..- ..|. +..++-...|+.|+||.++.|||||+|++.|.|..|++|++++||+|.++||-++
T Consensus 397 a~---~~~tpY~~~~s----~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIF 469 (971)
T KOG0501|consen 397 AN---DIGTPYNYNLS----NKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIF 469 (971)
T ss_pred Hh---hcCCCceeccC----CCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 32 23455665310 1222 3456778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHH
Q 002414 383 GNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLEL 462 (926)
Q Consensus 383 g~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 462 (926)
|+|++|+|+|.+....|+++++.+.+||+-..+|+.|.+||.+|.--.|..++|+|.+++|...|+++|.||-.|++++.
T Consensus 470 G~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKV 549 (971)
T KOG0501|consen 470 GHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKV 549 (971)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhh
Q 002414 463 LLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELI 542 (926)
Q Consensus 463 L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~l 542 (926)
.+.+|.|+-.++.++++|+..++.....||+.|++.|+..|.++||++|+++|...+. ++++|+.||.||+...
T Consensus 550 FnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE------VVAILGKGDVFGD~FW 623 (971)
T KOG0501|consen 550 FNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE------VVAILGKGDVFGDEFW 623 (971)
T ss_pred hccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc------EEEEeecCccchhHHh
Confidence 9999999999999999999999999999999999999999999999999999987554 3699999999999854
Q ss_pred hhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 543 SWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 543 l~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
- +. ....+.++|+|+|.|.+..|.++.+.+++.-|
T Consensus 624 K---~~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 624 K---EN----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred h---hh----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 1 11 12246889999999999999999999999988
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-62 Score=523.06 Aligned_cols=418 Identities=24% Similarity=0.346 Sum_probs=358.5
Q ss_pred HHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEeccHHHHH
Q 002414 85 LISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEYAQEIT 164 (926)
Q Consensus 85 ~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d~~~Ia 164 (926)
.+.++|++++++.+++|+.++ ......|..+|+++|++|++||++++||||++ +|.+|.|-.+..
T Consensus 4 s~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle------qGllV~~~~Kl~ 68 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE------QGLLVKDTSKLR 68 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh------cCeeehhhHHHH
Confidence 356789999999877666542 23346789999999999999999999999999 899999999999
Q ss_pred HHHhhh-hhhhHHHhhccHhHHHhhhhhcccCCcchhhchhhhHHHHHHHHHHHHHhhhhhhhhhhccccccchhHHHHH
Q 002414 165 RKYLLF-FLPIDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYPLFTNVTRTSCKLDESKFFKA 243 (926)
Q Consensus 165 ~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l~~yl~rllri~~l~~~~~~~~~~~~~~~~~~~ 243 (926)
+||+++ .|.+|++|.+|++++.++. ++. -+.| +.||+|++|++..+.+++...+ ...+..
T Consensus 69 ~hY~~s~~f~lD~l~liP~D~l~~~~------~~~-----~~~r-------~nRllk~yRl~~F~~rTetrT~-~Pn~fr 129 (536)
T KOG0500|consen 69 KHYVHSTQFKLDVLSLIPLDLLLFKD------GSA-----SLER-------LNRLLKIYRLFEFFDRTETRTT-YPNAFR 129 (536)
T ss_pred HHHHHhhhhhhhhhhhcchhHHhhcC------Ccc-----hHHH-------HHHHHHHHHHHHHHHHhccccC-CchHHH
Confidence 999998 8999999999999988753 121 1233 5667777778788887764322 123445
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCccccccCCCCCCCCCCCcchhhHhh
Q 002414 244 AFNLLLYM-VASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKDFCPTKPQNTSIFDFGIFQDA 322 (926)
Q Consensus 244 i~~ll~~~-l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~ 322 (926)
+.+|+.++ ++.||.||++|+|+.. .+.+.++|+...- .||. |+ .
T Consensus 130 i~~lv~~~~ilfHWNaClYf~iS~~------------------------~g~~~d~wvY~~i--~d~~-----~~---~- 174 (536)
T KOG0500|consen 130 ISKLVHYCLILFHWNACLYFLISKA------------------------IGFTTDDWVYPKI--NDPE-----FA---T- 174 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHh------------------------cCccccccccCCc--cCcc-----cc---c-
Confidence 78888775 4699999999999842 1356677986321 1111 11 0
Q ss_pred hhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q 002414 323 LQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLK 402 (926)
Q Consensus 323 ~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~ 402 (926)
....++..+|++|+||+..||||+|. --+|.+..|.+|.|+-.++|+++||.++|++++++.++++...+|+.+
T Consensus 175 -----c~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~ 248 (536)
T KOG0500|consen 175 -----CDAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAK 248 (536)
T ss_pred -----cchhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHH
Confidence 11246899999999999999999996 456889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHh
Q 002414 403 GQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICS 482 (926)
Q Consensus 403 ~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~ 482 (926)
|+.+++||+.|++|+.|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|+++++|+++++.++.+++.
T Consensus 249 mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVL 328 (536)
T KOG0500|consen 249 MDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVL 328 (536)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVR 562 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~ 562 (926)
.++++.|.|||+|+++||.+.+||||.+|.++|...||+.. ...+++|++|||+++++ ++++. +..+|+++|+
T Consensus 329 klk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIln-i~g~~--~gNRRtanvr 401 (536)
T KOG0500|consen 329 KLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISILN-IKGNK--NGNRRTANVR 401 (536)
T ss_pred HhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEEE-EcCcc--cCCcceeeee
Confidence 99999999999999999999999999999999998877653 68999999999999964 44433 4557999999
Q ss_pred EcceEEEEEEeHHHHHHHHHHh
Q 002414 563 AATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 563 A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++..+.+++|+++|+-+.+++|
T Consensus 402 SvGYSDlfvLskdDl~~aL~eY 423 (536)
T KOG0500|consen 402 SVGYSDLFVLSKDDLWEALSEY 423 (536)
T ss_pred eeccceeeEeeHHHHHHHHHhC
Confidence 9999999999999999999999
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-56 Score=483.55 Aligned_cols=426 Identities=18% Similarity=0.312 Sum_probs=365.1
Q ss_pred ceeeCCCC-cc---hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHH-hhhceeE
Q 002414 70 KIVLSPHG-PL---WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVI-FRLRTKS 144 (926)
Q Consensus 70 ~~ii~P~s-~~---Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~-l~f~t~y 144 (926)
+..|||++ ++ |-+++.++..|++|++|+...||+.+..+ ...|.+.++++|++|++||+ ++=|.-|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------IHYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------chhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 78999999 65 99999999999999999999999875432 34689999999999999985 6777888
Q ss_pred ecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHhhccHhHHHhhhhhcccCCcchhhchhhhHHHHHHHHHHHHHhhhh
Q 002414 145 FAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYP 223 (926)
Q Consensus 145 ~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l~~yl~rllri~~ 223 (926)
.- .|.+|.|.+...+||+++ .|-+|++|++|+++++..+ +...++ | ++|++++..
T Consensus 288 vr------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~-----G~~p~w------R-------~~R~lK~~s 343 (815)
T KOG0499|consen 288 VR------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF-----GFNPMW------R-------ANRMLKYTS 343 (815)
T ss_pred ee------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh-----ccchhh------h-------hhhHHHHHH
Confidence 87 799999999999999998 8999999999999988754 222333 3 333333333
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCccccc
Q 002414 224 LFTNVTRTSCKLDESKFFKAAFNLLLYMV-ASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKD 302 (926)
Q Consensus 224 l~~~~~~~~~~~~~~~~~~~i~~ll~~~l-~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~ 302 (926)
++........+ ...++..++.+.+.||+ ++|+.||+||..+-+ - +.+.+.|+.+
T Consensus 344 F~e~~~~Le~i-~s~~y~~RV~rT~~YmlyilHinacvYY~~Say--------------------q----glG~~rWVyd 398 (815)
T KOG0499|consen 344 FFEFNHHLESI-MSKAYIYRVIRTTGYLLYILHINACVYYWASAY--------------------Q----GLGTTRWVYD 398 (815)
T ss_pred HHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhh--------------------c----ccccceeEEc
Confidence 33222222222 23467777888888875 689999999998732 1 3567889852
Q ss_pred cCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002414 303 FCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLI 382 (926)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~ii 382 (926)
+....|++|+|||+.|++|+| |.-.|.|..|++|..+--+.|+++||.+|
T Consensus 399 -----------------------------g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslli 448 (815)
T KOG0499|consen 399 -----------------------------GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLI 448 (815)
T ss_pred -----------------------------CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 123569999999999999999 67889999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHH
Q 002414 383 GNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLEL 462 (926)
Q Consensus 383 g~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~ 462 (926)
|.|-.++...+..+++||..|++.-.||++.+||.+.|.||+.+|+|.|++++..||++++..||..||.+++..++..+
T Consensus 449 GQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~ 528 (815)
T KOG0499|consen 449 GQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSI 528 (815)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhh
Q 002414 463 LLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELI 542 (926)
Q Consensus 463 L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~l 542 (926)
|.++.+|++++.+.+..++.+++.+.|-|||+|+++||.|.+||||..|.|+|..-.++.. ++.+|++|+.|||++|
T Consensus 529 lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~---Vl~tL~~GsVFGEISL 605 (815)
T KOG0499|consen 529 LSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTK---VLVTLKAGSVFGEISL 605 (815)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCCE---EEEEecccceeeeeee
Confidence 9999999999999999999999999999999999999999999999999999987655553 5799999999999998
Q ss_pred hhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002414 543 SWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFR 598 (926)
Q Consensus 543 l~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~ 598 (926)
+ +..+ ..+||++|+|.+.|.+++|+++|+.+++..| |+-|...+
T Consensus 606 L-aigG-----~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y------P~sq~iLr 649 (815)
T KOG0499|consen 606 L-AIGG-----GNRRTANVVAHGFANLFVLDKKDLNEILVHY------PDSQRILR 649 (815)
T ss_pred e-eecC-----CCccchhhhhcccceeeEecHhHHHHHHHhC------ccHHHHHH
Confidence 5 2322 2369999999999999999999999999999 66555433
No 6
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.95 E-value=1.4e-27 Score=258.16 Aligned_cols=250 Identities=23% Similarity=0.336 Sum_probs=216.7
Q ss_pred HHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeC
Q 002414 453 NIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLS 532 (926)
Q Consensus 453 ~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~ 532 (926)
.-..++..+.++...+.++++...+.+++..|.+..|.+|+.|++|||+++.+|++.+|+++|... +. .+..++
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~--g~----ll~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE--GK----LLGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC--Ce----eeeccC
Confidence 334566788889999999999999999999999999999999999999999999999999999763 32 378999
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHH
Q 002414 533 AGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSI 612 (926)
Q Consensus 533 ~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~ 612 (926)
+|..|||+++++++ .|+++|+|+++|.+|+|+|+-|+.+++.. -.
T Consensus 220 ~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~t------g~-------------------- 264 (732)
T KOG0614|consen 220 AGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRT------GL-------------------- 264 (732)
T ss_pred CchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHH------HH--------------------
Confidence 99999999998654 39999999999999999999999998866 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhhh
Q 002414 613 QAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMT 692 (926)
Q Consensus 613 q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~~ 692 (926)
+. +....+||+
T Consensus 265 ----------------~r----------------------------------------------------~~~~~~fLr- 275 (732)
T KOG0614|consen 265 ----------------ER----------------------------------------------------HEQYMNFLR- 275 (732)
T ss_pred ----------------HH----------------------------------------------------HHHHHHHHH-
Confidence 00 014567899
Q ss_pred ccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 693 DFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 693 ~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
++|+|+++|++.+..+++.+....|..|++|+|||+.++.+|+|-+|.|.+...++ + .+.+..+..++.||+||
T Consensus 276 --sv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e---~-~~q~~~lr~l~kGd~FG 349 (732)
T KOG0614|consen 276 --SVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDE---G-STQPQELRTLNKGDYFG 349 (732)
T ss_pred --hhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCC---C-CCchhHHhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999998774 2 26678899999999999
Q ss_pred hhhhhhccCCCCCCCCCCCccEEEEccc-eEEEEEcHHHHHHHHHHcHHHHHHHHH
Q 002414 773 EELLTWALDPQSSFRPPNSTRTVVARTE-VEAFALTTDDLKAVASKSRRLRSKLLR 827 (926)
Q Consensus 773 E~~L~~~l~~~s~~~~~~~~~tv~Al~~-~e~~~l~~~dl~~l~~~~p~l~~~~l~ 827 (926)
|.+|... ..|++++.|..+ ++|+.|+++.|+.++....++..+...
T Consensus 350 E~al~~e---------dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~ 396 (732)
T KOG0614|consen 350 ERALLGE---------DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYG 396 (732)
T ss_pred HHHhhcc---------CccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhcc
Confidence 9987632 268999999887 999999999999998887776654433
No 7
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.93 E-value=3.6e-25 Score=231.43 Aligned_cols=234 Identities=19% Similarity=0.245 Sum_probs=201.7
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.+.+++.-+|.+++++.+.++...|..+.++.|+.|+.|||.++.+|+|.+|+++|+..+. .+..+++|.+|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~------~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT------YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe------EEeeeCCCCchhh
Confidence 5677888899999999999999999999999999999999999999999999999998522 2689999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHHHHHHHHH
Q 002414 540 ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSIQAAWRRY 619 (926)
Q Consensus 540 ~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~q~~~~~~ 619 (926)
++|++ .++|.+||+|.+++.+|.|++..|..++... -.
T Consensus 195 lALmy---------n~PRaATv~a~t~~klWgldr~SFrrIi~~s------~~--------------------------- 232 (368)
T KOG1113|consen 195 LALMY---------NPPRAATVVAKSLKKLWGLDRTSFRRIIMKS------CI--------------------------- 232 (368)
T ss_pred hHhhh---------CCCcccceeeccccceEEEeeceeEEEeecc------ch---------------------------
Confidence 99974 2359999999999999999999998877655 00
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhhhccCCccc
Q 002414 620 KRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMTDFKMPLF 699 (926)
Q Consensus 620 ~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~~~l~~plF 699 (926)
.+| .-...+|. ++|++
T Consensus 233 kkr-------------------------------------------------------------kMy~~~l~---s~pil 248 (368)
T KOG1113|consen 233 KKR-------------------------------------------------------------KMYEPFLE---SVPIL 248 (368)
T ss_pred hhh-------------------------------------------------------------hhhhhhhh---cchhh
Confidence 000 12334677 99999
Q ss_pred cCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhc
Q 002414 700 QSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWA 779 (926)
Q Consensus 700 ~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~ 779 (926)
+.++..+...+++.+.++.|++|+.|+.+|++++.+|+|.+|+|.+.... +| +.+ .+++||+|||.+|...
T Consensus 249 ~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~------~~--v~v-kl~~~dyfge~al~~~ 319 (368)
T KOG1113|consen 249 ESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR------DG--VEV-KLKKGDYFGELALLKN 319 (368)
T ss_pred HHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc------CC--eEE-EechhhhcchHHHHhh
Confidence 99999999999999999999999999999999999999999999998653 12 445 9999999999976522
Q ss_pred cCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHH
Q 002414 780 LDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRS 823 (926)
Q Consensus 780 l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~ 823 (926)
.|+.+||.|.++..|..++++.|+.|+.....+..
T Consensus 320 ---------~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dilk 354 (368)
T KOG1113|consen 320 ---------LPRAATVVAKGRLKCAKLDKPRFERLLGPCQDILK 354 (368)
T ss_pred ---------chhhceeeccCCceeeeeChHHHHHHhhHHHHHHH
Confidence 38999999999999999999999999998665544
No 8
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.61 E-value=6.4e-15 Score=173.08 Aligned_cols=149 Identities=52% Similarity=0.770 Sum_probs=120.1
Q ss_pred eeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhH
Q 002414 528 GFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTW 607 (926)
Q Consensus 528 v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~ 607 (926)
+..|++||+|||..++|+++ .| +++||+|+|.|+++.|++++|+.++++| +.+++..++|+|++|+++||+|
T Consensus 484 ~~~L~~Gd~~GeEl~~~~~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f-~~~~~~~l~~~~r~~s~~~r~~ 555 (727)
T KOG0498|consen 484 VAILGPGDFFGEELLTWCLD------LP-QTRTVRALTYCELFRLSADDLKEVLQQF-RRLGSKFLQHTFRYYSHLWRTW 555 (727)
T ss_pred EEEecCCCccchHHHHHHhc------CC-CCceeehhhhhhHHhccHHHHHHHHHHh-HHHHHHHHHhHHHHhhhhhhhh
Confidence 58999999999776667664 22 5899999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhccc--------ccCCCCCC
Q 002414 608 AACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRS--------LLLQKPAE 679 (926)
Q Consensus 608 ~~~~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~--------~~~~kp~~ 679 (926)
+++.+|++|+++++++....+...+...... ....+....+++..++++++.|..+.++...+ ..+++|.+
T Consensus 556 aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (727)
T KOG0498|consen 556 AACFIQAAWRRHIKRKGEEELALEEEESAIR-GDDRGSKSLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPAD 634 (727)
T ss_pred hhhhHHHHHHHHHHhhccchhhhhcchhhhc-cccccchhhhhcccccccccccCCCccccccccCccccccccCCCCCC
Confidence 9999999999999999877666553322111 13345567788889999999998776654322 56677888
Q ss_pred cchhHH
Q 002414 680 PDFRLA 685 (926)
Q Consensus 680 pd~~~~ 685 (926)
||+..+
T Consensus 635 p~f~~~ 640 (727)
T KOG0498|consen 635 PDFSDA 640 (727)
T ss_pred CCcccc
Confidence 877643
No 9
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.56 E-value=8.8e-14 Score=148.00 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=117.7
Q ss_pred HhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCC
Q 002414 688 KMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGT 767 (926)
Q Consensus 688 ~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~ 767 (926)
..|. ..|+|+.+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++... +|++.++..+++
T Consensus 7 ~~l~---~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~------~~~~~~i~~~~~ 77 (236)
T PRK09392 7 IRLR---NLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS------QDRETTLAILRP 77 (236)
T ss_pred HHHh---cCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC------CCceEEEEEeCC
Confidence 4666 9999999999999999999999999999999999999999999999999999764 256788999999
Q ss_pred CCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHH
Q 002414 768 GDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWA 841 (926)
Q Consensus 768 Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~ 841 (926)
|++||+..+. +. .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+...++...
T Consensus 78 g~~~g~~~~~---~~------~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~ 142 (236)
T PRK09392 78 VSTFILAAVV---LD------APYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLK 142 (236)
T ss_pred CchhhhHHHh---CC------CCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998665 22 27789999999999999999999999999999998888776655544443333
No 10
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.2e-13 Score=148.95 Aligned_cols=193 Identities=17% Similarity=0.224 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHhhccHhHHHhhhhhcccCCc
Q 002414 119 TAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLAILPLPQVVVSVIIQTTRGS 197 (926)
Q Consensus 119 ~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~ 197 (926)
..+..++.++-++|-+.++++|.. .|+ ..+++|+ -=+||++|++||++=+........+..
T Consensus 240 p~l~~vE~vCi~WFT~E~llR~~~---~P~---------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~ 301 (477)
T KOG3713|consen 240 PILTYVETVCIAWFTFEYLLRFLV---APN---------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLK 301 (477)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHc---Cch---------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHH
Confidence 458889999999999999999964 333 4567777 459999999999765433221110011
Q ss_pred chhhchhhhHHHHHHHHHHHHHhhhhhhhhhhccccc-cchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHhHHh
Q 002414 198 KVLSGLKLLKFFVIFQYVPRLIRIYPLFTNVTRTSCK-LDESKFFKAAFNLLLYMV-ASHVFGALWYFFAIVREVACWKS 275 (926)
Q Consensus 198 ~~~~~~~llr~~~l~~yl~rllri~~l~~~~~~~~~~-~~~~~~~~~i~~ll~~~l-~~H~~aC~w~~i~~~~~~~~w~~ 275 (926)
..-+....+|++| +.|++|+++|-++-.-...+ .+..+....+..|++|+. .+-+++.+-|++-..
T Consensus 302 ~l~~~~~vvrvlR----~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~-------- 369 (477)
T KOG3713|consen 302 ELENAGLVVRVLR----VLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKD-------- 369 (477)
T ss_pred HHhhhhhhHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Confidence 1111112333222 34444444443322211000 011122223444445543 355666666655311
Q ss_pred hhcccCCCCcccccccCCCCCCccccccCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCc
Q 002414 276 ACINHTGCSHASFYCHDTAGNNTFVKDFCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNL 355 (926)
Q Consensus 276 ~~~~~~~c~~~y~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGd 355 (926)
..++ .+..--.|+|||+.|||||||||
T Consensus 370 ---------------------------------~~~~--------------------~FtSIPa~~WWaiVTMTTVGYGD 396 (477)
T KOG3713|consen 370 ---------------------------------EPDT--------------------KFTSIPAGFWWAVVTMTTVGYGD 396 (477)
T ss_pred ---------------------------------CCCC--------------------CCccccchhheeeEEEeeecccC
Confidence 0000 02223368999999999999999
Q ss_pred cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 356 QTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 356 i~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
.+|.|...++++..+++.|+++.|+-|..|.+-+.....
T Consensus 397 m~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 397 MVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYS 435 (477)
T ss_pred ccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHH
Confidence 999999999999999999999999987655554444433
No 11
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.47 E-value=2e-12 Score=135.06 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=105.2
Q ss_pred cCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhc
Q 002414 700 QSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWA 779 (926)
Q Consensus 700 ~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~ 779 (926)
+.+++++++.+++.++.+.|++|++|+++||+++++|+|++|.++++..+. +|++..+..++|||+||+..+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~-----~g~~~~~~~~~~g~~~g~~~~~-- 78 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDE-----EGKEMILSYLNQGDFIGELGLF-- 78 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECC-----CCCEEEEEEcCCCCEEeehhhc--
Confidence 458999999999999999999999999999999999999999999997764 4889999999999999988654
Q ss_pred cCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHH
Q 002414 780 LDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRF 832 (926)
Q Consensus 780 l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~ 832 (926)
... +++..+++|.++|+++.|+.++|.+++.++|++...+++...+.
T Consensus 79 -~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~ 125 (211)
T PRK11753 79 -EEG-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARR 125 (211)
T ss_pred -cCC-----CCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 111 36788999999999999999999999999999987776655443
No 12
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.45 E-value=2.1e-12 Score=137.35 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=102.2
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.+.++.+++|..++++.++.++...+.+.|++|++|+++||+++.+|+|.+|.|+++...+++.. .+..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~--~i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRET--TLAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceE--EEEEeCCCchhhh
Confidence 46789999999999999999999999999999999999999999999999999999876554432 4789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 540 ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 540 ~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.+++ +.. ++.++++|.++|+++.+++++|.+++.++
T Consensus 84 ~~~~---~~~------~~~~~~~A~~~~~~~~i~~~~~~~l~~~~ 119 (236)
T PRK09392 84 AAVV---LDA------PYLMSARTLTRSRVLMIPAELVREAMSED 119 (236)
T ss_pred HHHh---CCC------CCceEEEEcCceEEEEEeHHHHHHHHHHC
Confidence 9873 322 27889999999999999999999999999
No 13
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=99.43 E-value=1.7e-12 Score=149.54 Aligned_cols=215 Identities=21% Similarity=0.238 Sum_probs=165.9
Q ss_pred CCCEEEccCCccCeEEEEEeeEEEEEEeeCCee-----eeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 002414 491 EESHIVLEGDRIDGMLFVMRGKLWSATMVGGRM-----SFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAAT 565 (926)
Q Consensus 491 ~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~-----~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t 565 (926)
..++|.++|+....+|+|.+|.+.++...-..+ .-..+..+++|+.+|..+++.+ . ++..+++|.+
T Consensus 393 eitiiv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~---e------~S~~tirArs 463 (1158)
T KOG2968|consen 393 EITIIVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTN---E------PSFITIRARS 463 (1158)
T ss_pred ceEEEEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcC---C------cceEEEEEec
Confidence 445589999999999999999998775321111 0023567899999999998631 1 2788999999
Q ss_pred eEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC
Q 002414 566 EVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGI 645 (926)
Q Consensus 566 ~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~ 645 (926)
+|.+..+++.+|.+++.++ |.+--
T Consensus 464 dt~v~~isrs~l~~~~~~~------p~I~L-------------------------------------------------- 487 (1158)
T KOG2968|consen 464 DTRVLFISRSDLERFLDAE------PLIYL-------------------------------------------------- 487 (1158)
T ss_pred ceEEEEeeHHHHHHHHHhC------ceEEE--------------------------------------------------
Confidence 9999999999999999988 32100
Q ss_pred CCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEE
Q 002414 646 TSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWI 725 (926)
Q Consensus 646 ~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I 725 (926)
+++.. .+. . ++ ..+..+-..+.+..+.+|+.+
T Consensus 488 -----------~ia~s---------------------------vl~---~------ls-p~lr~~D~AldWv~l~~g~al 519 (1158)
T KOG2968|consen 488 -----------RIAHS---------------------------VLR---R------LS-PFLRKLDFALDWVRLEPGQAL 519 (1158)
T ss_pred -----------ehhhH---------------------------HHH---h------cC-HHHhhhhhhcceEEeccccHH
Confidence 00000 011 1 11 123445566789999999999
Q ss_pred EccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhh-hhhccCCCCCCCCCCCccEEEEccceEEE
Q 002414 726 FREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEEL-LTWALDPQSSFRPPNSTRTVVARTEVEAF 804 (926)
Q Consensus 726 ~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~-L~~~l~~~s~~~~~~~~~tv~Al~~~e~~ 804 (926)
+++||..|++|+|++|+++...... .|+..++..++.||.+|+.. |+. .+|..|+.|+-++++.
T Consensus 520 yrqgD~Sd~iyvVl~GRlRsv~~~~-----~~k~~i~~EygrGd~iG~~E~lt~----------~~R~tTv~AvRdSela 584 (1158)
T KOG2968|consen 520 YRQGDSSDSIYVVLNGRLRSVIRQS-----GGKKEIVGEYGRGDLIGEVEMLTK----------QPRATTVMAVRDSELA 584 (1158)
T ss_pred HhcCCccCcEEEEecCeehhhhhcc-----CccchhhhhccCcceeehhHHhhc----------CCccceEEEEeehhhh
Confidence 9999999999999999999986642 14555889999999999984 552 2889999999999999
Q ss_pred EEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 805 ALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 805 ~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
.||..-|..+..++|.+..+..+..++.+
T Consensus 585 riPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 585 RIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred hccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999998888877766
No 14
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.41 E-value=3.6e-12 Score=135.55 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=104.3
Q ss_pred CCccccCCCHHHHHHHHhhcc-eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehh
Q 002414 695 KMPLFQSLDAKTLDDICIYLK-PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGE 773 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~-~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE 773 (926)
+.+.|..+++++++.|..... .+.|++|++|+++||+++++|+|.+|.|+++..+. +|++.++.++.|||+||+
T Consensus 17 ~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~-----~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 17 QLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITE-----QGDEQITGFHLAGDLVGF 91 (235)
T ss_pred ccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECC-----CCCEEEEEeccCCceecc
Confidence 445555799999999998886 46899999999999999999999999999998864 488999999999999997
Q ss_pred hhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHH
Q 002414 774 ELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRF 832 (926)
Q Consensus 774 ~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~ 832 (926)
..+. +. +...+++|+++++++.|++++|.+++.++|.+....++...+.
T Consensus 92 ~~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~ 140 (235)
T PRK11161 92 DAIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGE 140 (235)
T ss_pred cccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 6543 11 3345899999999999999999999999999988877665543
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.40 E-value=2.7e-12 Score=160.25 Aligned_cols=139 Identities=15% Similarity=0.165 Sum_probs=120.8
Q ss_pred cchhHHHHHhhhhcc--CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCC
Q 002414 680 PDFRLAFRKMLMTDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757 (926)
Q Consensus 680 pd~~~~i~~~L~~~l--~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g 757 (926)
+.++.+|..++...+ ++|+|++++++.+..|+..++.+.|++|+.|+.|||+++.+|||++|.|++...+ ++
T Consensus 361 ~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~------~~ 434 (823)
T PLN03192 361 KSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSE------GE 434 (823)
T ss_pred HHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEec------CC
Confidence 356667766654333 9999999999999999999999999999999999999999999999999998643 26
Q ss_pred CeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 758 ~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
++.++..+++||+|||..+... .|++.|++|.+.|+++.|++++|.++++++|+....++++..+..
T Consensus 435 ~e~~l~~l~~Gd~FGE~~~l~~---------~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~ 501 (823)
T PLN03192 435 KERVVGTLGCGDIFGEVGALCC---------RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHH 501 (823)
T ss_pred cceeeEEccCCCEecchHHhcC---------CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7788999999999999976522 378999999999999999999999999999999888888777643
No 16
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.37 E-value=8.2e-12 Score=115.70 Aligned_cols=114 Identities=26% Similarity=0.404 Sum_probs=101.8
Q ss_pred cccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhh
Q 002414 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLT 777 (926)
Q Consensus 698 lF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~ 777 (926)
+|+.++++.+..++..++...+++|+.|+.+|++++++|+|.+|.++++..+. +|++..+..+.+|++||+..+.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~-----~g~~~~~~~~~~g~~~g~~~~~ 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDE-----DGREQIVGFLGPGDLFGELALL 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECC-----CCcEEEEEecCCccCcChHHHh
Confidence 47889999999999999999999999999999999999999999999998764 3778899999999999988654
Q ss_pred hccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHH
Q 002414 778 WALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKL 825 (926)
Q Consensus 778 ~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~ 825 (926)
.. .++..+++|.++|+++.|+.++|..++.++|.+..++
T Consensus 76 ---~~------~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 76 ---GN------GPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred ---cC------CCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 11 2678899999999999999999999999999876653
No 17
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.35 E-value=2.4e-12 Score=132.31 Aligned_cols=192 Identities=19% Similarity=0.326 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHhhccHhHHHhhhhhcccCCcchhh
Q 002414 123 FLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLAILPLPQVVVSVIIQTTRGSKVLS 201 (926)
Q Consensus 123 ~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~ 201 (926)
+++.+++++|.+|+++++.+.... +++|+++ |.++|+++++|........... ..+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-----------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~-- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-----------------RRRYFRSWWNWFDFISVIPSIVSVILRSYG---SASA-- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG------------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HH--
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-----------------HHHHhcChhhcccccccccccccccccccc---cccc--
Confidence 468899999999999999864331 6779998 7789999999996655432111 1100
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhhhhhhccccccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHhHHhhhccc
Q 002414 202 GLKLLKFFVIFQYVPRLIRIYPLFTNVTRTSCKLDESKFFKAAFNLLL-YMVASHVFGALWYFFAIVREVACWKSACINH 280 (926)
Q Consensus 202 ~~~llr~~~l~~yl~rllri~~l~~~~~~~~~~~~~~~~~~~i~~ll~-~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~ 280 (926)
..++++.++++ +.|++|+.+..+.+.+...... .....+.++++ ++++.|+.||+++.+.-.....|+
T Consensus 59 -~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~------- 127 (200)
T PF00520_consen 59 -QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI--RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCC------- 127 (200)
T ss_dssp -CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred -cceEEEEEeec-cccccccccccccccccccccc--cccccccccccccccccccccchhheeccccccccc-------
Confidence 12333333333 4445555554444443322111 11223444443 456789999999888632111110
Q ss_pred CCCCcccccccCCCCCCccccccCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccC-
Q 002414 281 TGCSHASFYCHDTAGNNTFVKDFCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSS- 359 (926)
Q Consensus 281 ~~c~~~y~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~- 359 (926)
. ..+... + .....+....|..|+||+++++|+.|+||..+.
T Consensus 128 ---~------------~~~~~~--------~---------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~ 169 (200)
T PF00520_consen 128 ---D------------PTWDSE--------N---------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSC 169 (200)
T ss_dssp ------------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHH
T ss_pred ---c------------cccccc--------c---------------ccccccccccccccccccccccccCCcccccccc
Confidence 0 000000 0 011334567799999999999999999999986
Q ss_pred ----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 002414 360 ----YFWENFFA-IVITISGLVFFLYLIGNI 385 (926)
Q Consensus 360 ----~~~E~~~~-i~~~i~G~~~fa~iig~i 385 (926)
+..+.++. +++.+.+.++++.++|.|
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 170 MSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 88999999 667777779999999875
No 18
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2.2e-11 Score=113.41 Aligned_cols=118 Identities=27% Similarity=0.331 Sum_probs=103.0
Q ss_pred cccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhh
Q 002414 698 LFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLT 777 (926)
Q Consensus 698 lF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~ 777 (926)
+|.+++++.++.++..++.+.+++|++|+++||+++++|+|.+|.++++..+. +|++..+..+++|++||+..+.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~-----~g~~~~~~~~~~g~~~g~~~~~ 75 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLE-----DGREQILGILGPGDFFGELALL 75 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECC-----CCceEEEEeecCCceechhhhc
Confidence 47899999999999999999999999999999999999999999999998763 3778899999999999998654
Q ss_pred hccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHH
Q 002414 778 WALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLR 827 (926)
Q Consensus 778 ~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~ 827 (926)
.. .. .+...+++|.++++++.++.+++......++.+..+.+.
T Consensus 76 ~~-~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 76 TN-SR------RAASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred cC-CC------cccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 11 11 267889999999999999999999999998887766653
No 19
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.33 E-value=4.4e-11 Score=124.49 Aligned_cols=126 Identities=26% Similarity=0.348 Sum_probs=109.9
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
..+.|..++++....+......+.+++|++|+++||+++.+|+|.+|.++++.... +|++.++..++|||+|||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~-----~G~~~~~~~~~~g~~fg~~ 78 (214)
T COG0664 4 ENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTE-----DGREIILGFLGPGDFFGEL 78 (214)
T ss_pred cccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECC-----CCcEEEEEEecCCchhhhH
Confidence 56777778888888888899999999999999999999999999999999998874 4889999999999999999
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
.+... .++..+++|+++++++.+++++|.+++.+.|.+...+++...+.+.
T Consensus 79 ~l~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~ 129 (214)
T COG0664 79 ALLGG---------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLR 129 (214)
T ss_pred HHhcC---------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 76621 2689999999999999999999999888878888887777666544
No 20
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.32 E-value=1.4e-11 Score=109.74 Aligned_cols=90 Identities=28% Similarity=0.405 Sum_probs=80.8
Q ss_pred EEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEE
Q 002414 717 VLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVV 796 (926)
Q Consensus 717 ~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~ 796 (926)
++|++|++|+++|++++++|||++|.++++..+. +++..++..+++|++||+..+... .++..+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~-----~~~~~~~~~~~~g~~~g~~~~~~~---------~~~~~~~~ 67 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINE-----DGKEQIIFFLGPGDIFGEIELLTG---------KPSPFTVI 67 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETT-----TSEEEEEEEEETTEEESGHHHHHT---------SBBSSEEE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEecee-----cceeeeecceeeeccccceeecCC---------CccEEEEE
Confidence 6899999999999999999999999999998874 366778999999999999965522 26799999
Q ss_pred EccceEEEEEcHHHHHHHHHHcHH
Q 002414 797 ARTEVEAFALTTDDLKAVASKSRR 820 (926)
Q Consensus 797 Al~~~e~~~l~~~dl~~l~~~~p~ 820 (926)
|.++|+++.|++++|.++++++|+
T Consensus 68 a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 68 ALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp ESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred EccCEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999999985
No 21
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.30 E-value=3.4e-11 Score=127.16 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=95.7
Q ss_pred HHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCC
Q 002414 709 DICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRP 788 (926)
Q Consensus 709 ~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~ 788 (926)
.|...++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..+.|||+|||..+. +.
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~-----~G~e~~~~~~~~g~~~G~~~~~---~~------ 91 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLA-----NGKVSLIDFFAAPCFIGEIELI---DK------ 91 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECC-----CCCEeeeeecCCCCeEEeehhh---cC------
Confidence 466788899999999999999999999999999999998764 4889999999999999998654 22
Q ss_pred CCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 789 PNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 789 ~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
.+++.+++|+++|+++.+++++|..++.++|.+...+++...+
T Consensus 92 ~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~ 134 (226)
T PRK10402 92 DHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSH 134 (226)
T ss_pred CCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3778999999999999999999999999999888876665443
No 22
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.29 E-value=6.7e-11 Score=129.53 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=107.8
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
++++|+...+..+.++...++++.|.||++|+|.||.+.+||+|.+|.+++...| |+ .....+++|++|||.
T Consensus 311 kV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD-------g~-t~~~~L~~G~~FGEi 382 (536)
T KOG0500|consen 311 KVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD-------GV-TVFVTLKAGSVFGEI 382 (536)
T ss_pred hhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC-------Cc-EEEEEecCCceeeee
Confidence 9999999999999999999999999999999999999999999999999999765 22 357889999999999
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHH
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRH 828 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~ 828 (926)
.+.+. +...+...|+++|+.+.-+.+++|+++|+-++++.+|+-...++++
T Consensus 383 sIlni---~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 383 SILNI---KGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred EEEEE---cCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 76644 2223445789999999999999999999999999999876666644
No 23
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.28 E-value=1.5e-10 Score=120.89 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=93.8
Q ss_pred ccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCC
Q 002414 470 QNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDP 548 (926)
Q Consensus 470 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~ 548 (926)
+.++++.++.++..++.+.|++|++|+.+|++++.+|+|++|.++++..+. ++. ..+..+++|++||+..++ ..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~--~~~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKE--MILSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEEeehhhc---cC
Confidence 457999999999999999999999999999999999999999999987542 332 246889999999999874 21
Q ss_pred CCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHH
Q 002414 549 NSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHH 595 (926)
Q Consensus 549 ~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~ 595 (926)
.+++.++++|.++|+++.+++++|.+++.++ |.+..
T Consensus 81 -----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------p~~~~ 116 (211)
T PRK11753 81 -----GQERSAWVRAKTACEVAEISYKKFRQLIQVN------PDILM 116 (211)
T ss_pred -----CCCceEEEEEcCcEEEEEEcHHHHHHHHHHC------HHHHH
Confidence 1236789999999999999999999999999 66554
No 24
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=6.3e-12 Score=137.73 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=105.9
Q ss_pred HHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 458 LGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 458 l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
-+.++|+++|+|.++|++.+..+++.++...|..|++|++||+.++.+|+|.+|.|.|...+.+..+...+..++.||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 45789999999999999999999999999999999999999999999999999999999877654444458999999999
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcce-EEEEEEeHHHHHHHHHHh
Q 002414 538 GEELISWALDPNSSHYLPISSRTVRAATE-VEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 538 Ge~~ll~~l~~~~~~~~~~r~~tv~A~t~-~~ll~L~~~~f~~ll~~~ 584 (926)
||-+|+ . ...|++++.|... ++++.|+++.|..++...
T Consensus 349 GE~al~---~------edvRtAniia~~~gv~cl~lDresF~~liG~l 387 (732)
T KOG0614|consen 349 GERALL---G------EDVRTANIIAQAPGVECLTLDRESFKKLIGDL 387 (732)
T ss_pred hHHHhh---c------cCccchhhhccCCCceEEEecHHHHHHhcccH
Confidence 999985 1 1248999999997 999999999999999988
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=1.5e-11 Score=129.95 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=120.1
Q ss_pred CCCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCC
Q 002414 677 PAEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTL 756 (926)
Q Consensus 677 p~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~ 756 (926)
|-+++-++.+.+.++ +.-+|++|+++++..+.+.+..+.+++|+.|++|||.++.||+|-+|+++++..+.
T Consensus 111 pKd~e~~~~L~~a~r---~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~------ 181 (368)
T KOG1113|consen 111 PKDDETRRRLEEAFR---KNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT------ 181 (368)
T ss_pred CCCHHHHHHHHHHHH---hccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe------
Confidence 444445556777777 88999999999999999999999999999999999999999999999999996531
Q ss_pred CCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH--H
Q 002414 757 GGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY--S 834 (926)
Q Consensus 757 g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~--s 834 (926)
.+..++||..|||.+|... +||.+||.|.+++.+|.|++..|..++-.......+++...++-. -
T Consensus 182 ----~v~~~~~g~sFGElALmyn---------~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil 248 (368)
T KOG1113|consen 182 ----YVTTYSPGGSFGELALMYN---------PPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPIL 248 (368)
T ss_pred ----EEeeeCCCCchhhhHhhhC---------CCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhh
Confidence 5788999999999987633 599999999999999999999998877665555555554443311 1
Q ss_pred hhhhhHHHHHHHHHHH
Q 002414 835 QQWRTWAACSIQAAWS 850 (926)
Q Consensus 835 ~~~~~~~~~~~q~~~~ 850 (926)
...++|+++-+-.+.-
T Consensus 249 ~~l~k~er~kv~dal~ 264 (368)
T KOG1113|consen 249 ESLEKLERAKVADALG 264 (368)
T ss_pred HHHHHHHHHhhhcccc
Confidence 1345555555544443
No 26
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.25 E-value=7.5e-11 Score=122.27 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=85.5
Q ss_pred hcceEEeCCCCEEEccCC--CCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCC
Q 002414 713 YLKPVLYEKKSWIFREGR--PVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPN 790 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd--~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~ 790 (926)
.++...|++|++|++||| +++++|+|++|.|+++..+. +|++.++..++|||+|||..+. + .+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~-----~G~e~~l~~~~~Gd~~G~~~~~---~-------~~ 69 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDD-----EGNALTLRYVRPGEYFGEEALA---G-------AE 69 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECC-----CCCEEEEEEecCCCeechHHhc---C-------CC
Confidence 457889999999999999 77999999999999998864 4899999999999999987553 1 25
Q ss_pred CccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhh
Q 002414 791 STRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQW 837 (926)
Q Consensus 791 ~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~ 837 (926)
++.+++|+++|+++.|+.++| .|.+...++++..+..++..
T Consensus 70 ~~~~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~ 110 (202)
T PRK13918 70 RAYFAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAY 110 (202)
T ss_pred CCceEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHH
Confidence 678999999999999999987 46666666666655544433
No 27
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.22 E-value=1.2e-10 Score=123.33 Aligned_cols=109 Identities=19% Similarity=0.123 Sum_probs=94.8
Q ss_pred HHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCC
Q 002414 709 DICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRP 788 (926)
Q Consensus 709 ~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~ 788 (926)
.++...+.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..+.|||+||+...
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~-----~G~e~i~~~~~~Gd~fG~~~~------------ 95 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLS-----DGRRQIGAFHLPGDVFGLESG------------ 95 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECC-----CCcEEEEEEecCCceecccCC------------
Confidence 445677889999999999999999999999999999998764 478889999999999995311
Q ss_pred CCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 789 PNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 789 ~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
.++..+++|+++|+++.|+.++|..++..+|.+...+++.+.+.+.
T Consensus 96 ~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~ 141 (230)
T PRK09391 96 STHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLR 141 (230)
T ss_pred CcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 2567899999999999999999999999999999988887666443
No 28
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.22 E-value=3.5e-11 Score=133.22 Aligned_cols=116 Identities=25% Similarity=0.349 Sum_probs=104.3
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
++.+|++.+.+.+..+..+++.+.|-+|++|++.||.+.+||+|..|.|+|. ||..++.++..|.+|.+|||+
T Consensus 531 KVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVl-------GGp~~~~Vl~tL~~GsVFGEI 603 (815)
T KOG0499|consen 531 KVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVL-------GGPDGTKVLVTLKAGSVFGEI 603 (815)
T ss_pred HHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEe-------cCCCCCEEEEEecccceeeee
Confidence 8899999999999999999999999999999999999999999999999998 334677889999999999999
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHH
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRS 823 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~ 823 (926)
.|....... .|+++|+|..-|.+|+|+++||.+++..+|.-..
T Consensus 604 SLLaigG~n------RRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~ 646 (815)
T KOG0499|consen 604 SLLAIGGGN------RRTANVVAHGFANLFVLDKKDLNEILVHYPDSQR 646 (815)
T ss_pred eeeeecCCC------ccchhhhhcccceeeEecHhHHHHHHHhCccHHH
Confidence 765442222 6899999999999999999999999999996443
No 29
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.22 E-value=1.8e-10 Score=106.58 Aligned_cols=107 Identities=27% Similarity=0.395 Sum_probs=92.9
Q ss_pred ccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcC
Q 002414 468 LFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALD 547 (926)
Q Consensus 468 lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~ 547 (926)
+|..++++.+..++..++.+.+.+|++|+.+|++.+.+|+|.+|.+.++..+.+... ..+..+.+|++||+..++ .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~-~~~~~~~~g~~~g~~~~~---~ 76 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGRE-QIVGFLGPGDLFGELALL---G 76 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcE-EEEEecCCccCcChHHHh---c
Confidence 478899999999999999999999999999999999999999999999876543211 236889999999999873 2
Q ss_pred CCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 548 PNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 548 ~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.. ++..+++|.++|.++.|+.++|.+++.+.
T Consensus 77 ~~------~~~~~~~a~~~~~~~~i~~~~~~~~~~~~ 107 (115)
T cd00038 77 NG------PRSATVRALTDSELLVLPRSDFRRLLQEY 107 (115)
T ss_pred CC------CCCceEEEcCceEEEEEeHHHHHHHHHHC
Confidence 22 26789999999999999999999999998
No 30
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.21 E-value=1.1e-10 Score=120.02 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=85.2
Q ss_pred CCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccce
Q 002414 722 KSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEV 801 (926)
Q Consensus 722 g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~ 801 (926)
|+.|+++||+++++|+|++|.|+++..++ +|++.++..++|||+||+..+. ... ..++..+++|+++|
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~-----~G~e~~l~~~~~g~~~G~~~~~---~~~----~~~~~~~~~A~~~~ 68 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYE-----SGEEITVALLRENSVFGVLSLI---TGH----RSDRFYHAVAFTRV 68 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCC-----CCcEeeeEEccCCCEeeeeeec---cCC----CCccceEEEEecce
Confidence 78999999999999999999999998764 4889999999999999988654 111 01345789999999
Q ss_pred EEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 802 EAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 802 e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
+++.+++++|.+++.++|.+...+++...+..
T Consensus 69 ~v~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l 100 (193)
T TIGR03697 69 ELLAVPIEQVEKAIEEDPDLSMLLLQGLSSRI 100 (193)
T ss_pred EEEEeeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 99999999999999999999998888765543
No 31
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.19 E-value=1.6e-10 Score=132.95 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=100.9
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEe
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAH 764 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~ 764 (926)
.+..+|. ++|+|++|++++++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+. +| +.++..
T Consensus 5 ~~~~~L~---~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~-----~g-e~~l~~ 75 (413)
T PLN02868 5 SVVEFLG---SVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAE-----EE-SRPEFL 75 (413)
T ss_pred HHHHHHh---cCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECC-----CC-cEEEEE
Confidence 5667788 99999999999999999999999999999999999999999999999999998763 24 678899
Q ss_pred cCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHc
Q 002414 765 LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKS 818 (926)
Q Consensus 765 l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~ 818 (926)
+++||+||+. +. . .++..+++|.++|+++.|++++|..+....
T Consensus 76 l~~Gd~fG~~-l~----~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 76 LKRYDYFGYG-LS----G------SVHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred eCCCCEeehh-hC----C------CCcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 9999999975 32 1 267899999999999999999998876653
No 32
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=99.18 E-value=3.9e-10 Score=130.48 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=83.8
Q ss_pred HHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCc
Q 002414 478 DDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPIS 557 (926)
Q Consensus 478 ~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r 557 (926)
-+++++++...+..|++|++.|++.+.+|.+.+|.++|...++.... ..+..+.+|+.|-...-+ +|..+....+.+
T Consensus 109 l~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~-~llk~V~~G~~~tSllSi--Ld~l~~~ps~~~ 185 (1158)
T KOG2968|consen 109 LELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKE-YLLKTVPPGGSFTSLLSI--LDSLPGFPSLSR 185 (1158)
T ss_pred eeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCce-eeEeeccCCCchHhHHHH--HHhccCCCcccc
Confidence 34458888889999999999999999999999999999887755443 357899999888765321 333333333457
Q ss_pred ceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 558 SRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 558 ~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+..++|.++|.+..++...|..+...+
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~ 212 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKN 212 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccC
Confidence 888999999999999999999999999
No 33
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.16 E-value=2.5e-10 Score=101.51 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=77.0
Q ss_pred EEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcce
Q 002414 487 VLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATE 566 (926)
Q Consensus 487 ~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~ 566 (926)
+.|++|++|+++|++++++|||++|.++++..+.+.... .+..+++|++||+.+++. . . ++..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~--~-~------~~~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQ-IIFFLGPGDIFGEIELLT--G-K------PSPFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEE-EEEEEETTEEESGHHHHH--T-S------BBSSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceee-eecceeeeccccceeecC--C-C------ccEEEEEEccC
Confidence 689999999999999999999999999999877554322 468999999999998852 1 1 37899999999
Q ss_pred EEEEEEeHHHHHHHHHHh
Q 002414 567 VEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 567 ~~ll~L~~~~f~~ll~~~ 584 (926)
|+++.|++++|.++++++
T Consensus 72 ~~~~~i~~~~~~~~~~~~ 89 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQD 89 (91)
T ss_dssp EEEEEEEHHHHHHHHHHS
T ss_pred EEEEEEeHHHHHHHHHhC
Confidence 999999999999999998
No 34
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.16 E-value=8.2e-10 Score=117.41 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=90.6
Q ss_pred hcCCcccccCCHHHHHHHHhhcEE-EEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechh
Q 002414 463 LLNVPLFQNLDAKTLDDICSYLKP-VLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEE 540 (926)
Q Consensus 463 L~~i~lF~~l~~~~l~~l~~~l~~-~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~ 540 (926)
+++.+.|..++++.++.|....+. ..|++|++|+++||+++++|+|.+|.|+++..+. |+.. .+..+.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~--i~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQ--ITGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEE--EEEeccCCceeccc
Confidence 445555557999999999988864 6799999999999999999999999999998653 3332 36778999999987
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 541 LISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 541 ~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++. +.. ...+++|.++|+++.|++++|.+++.++
T Consensus 93 ~~~---~~~-------~~~~~~a~~~~~i~~ip~~~f~~l~~~~ 126 (235)
T PRK11161 93 AIG---SGQ-------HPSFAQALETSMVCEIPFETLDDLSGKM 126 (235)
T ss_pred ccc---CCC-------CcceEEEeccEEEEEEEHHHHHHHHHHC
Confidence 652 211 3458999999999999999999999999
No 35
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.15 E-value=8.6e-10 Score=102.61 Aligned_cols=109 Identities=24% Similarity=0.330 Sum_probs=92.6
Q ss_pred ccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcC
Q 002414 468 LFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALD 547 (926)
Q Consensus 468 lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~ 547 (926)
+|.+++++.+..++..++.+.+++|++|+++|++.+.+|+|.+|.++++..+.+... ..+..+.+|++||+..++. .
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~-~~~~~~~~g~~~g~~~~~~--~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGRE-QILGILGPGDFFGELALLT--N 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCce-EEEEeecCCceechhhhcc--C
Confidence 478899999999999999999999999999999999999999999999976433222 2478999999999998731 1
Q ss_pred CCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 548 PNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 548 ~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.. .+...+++|.++|+++.++.+++...+..+
T Consensus 78 ~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 109 (120)
T smart00100 78 SR-----RAASATAVALELATLLRIDFRDFLQLLQEN 109 (120)
T ss_pred CC-----cccceEEEEEeeEEEEccCHHHHHHHHHHh
Confidence 11 136788999999999999999999999888
No 36
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.15 E-value=5e-10 Score=118.28 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=82.0
Q ss_pred HHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCC
Q 002414 478 DDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPI 556 (926)
Q Consensus 478 ~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~ 556 (926)
..+....+.+.|++|++|+.+||+++.+|+|.+|.|+++..+. |+.. .+..+.+|++||+.+++ +.. +
T Consensus 25 ~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~--~~~~~~~g~~~G~~~~~---~~~------~ 93 (226)
T PRK10402 25 FDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVS--LIDFFAAPCFIGEIELI---DKD------H 93 (226)
T ss_pred HHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEe--eeeecCCCCeEEeehhh---cCC------C
Confidence 3577778889999999999999999999999999999987643 3332 36889999999998863 322 3
Q ss_pred cceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 557 SSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 557 r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++++++|.++|+++.+++++|.+++.+.
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~ 121 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLND 121 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcC
Confidence 7889999999999999999999999998
No 37
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.1e-11 Score=129.71 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQI 387 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~ 387 (926)
--.+||||+.|||||||||..|.|...+++..++.|.|++-.|.-+--+.+
T Consensus 394 IPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVs 444 (507)
T KOG1545|consen 394 IPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVS 444 (507)
T ss_pred CcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEe
Confidence 346899999999999999999999999999999999999888876544443
No 38
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.14 E-value=1.5e-09 Score=112.98 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=93.5
Q ss_pred cCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCC-eeeeeeeeEeCCCCeechhhh
Q 002414 464 LNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG-RMSFQSGFYLSAGDYYGEELI 542 (926)
Q Consensus 464 ~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~-~~~~~~v~~l~~G~~FGe~~l 542 (926)
...+.|..++.+....+......+.+++|++|+++||+++.+|+|.+|.++++....+ +.. .+..+++|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREI--ILGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEE--EEEEecCCchhhhHHH
Confidence 4556777778888888889999999999999999999999999999999999987543 332 3688999999999998
Q ss_pred hhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 543 SWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 543 l~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+ ... +++++++|+++|+++.+++++|.+++.+.
T Consensus 81 ~---~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 113 (214)
T COG0664 81 L---GGD------PRSASAVALTDVEVLEIPRKDFLELLAES 113 (214)
T ss_pred h---cCC------CccceEEEcceEEEEEecHHHHHHHHhhC
Confidence 4 211 37899999999999999999999998873
No 39
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.04 E-value=1.9e-09 Score=123.99 Aligned_cols=112 Identities=26% Similarity=0.433 Sum_probs=97.4
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.+.++++++|++++++.+..++..++.+.|++|++|+++||..+.+|+|++|.|+++..+++.. ..+..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge--~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEES--RPEFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCc--EEEEEeCCCCEeeh
Confidence 4678899999999999999999999999999999999999999999999999999988764432 24788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 540 ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 540 ~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
. + ... ++.++++|.++|+++.|++++|..+...+
T Consensus 85 ~-l----~~~------~~~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 85 G-L----SGS------VHSADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred h-h----CCC------CcccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 5 3 122 37899999999999999999998877655
No 40
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.03 E-value=2.9e-09 Score=119.22 Aligned_cols=121 Identities=23% Similarity=0.317 Sum_probs=106.3
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEe
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAH 764 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~ 764 (926)
.+++|+. +.|+|+.++++++++|...+....|.+|+.|+..|.|..++|+|.+|.|++...+ ++ .+..
T Consensus 4 ~~~~Fl~---~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~--------g~-v~~~ 71 (610)
T COG2905 4 EPDQFLQ---QHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG--------GE-VLDR 71 (610)
T ss_pred CHHHHHh---cCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC--------Ce-eeee
Confidence 4678999 9999999999999999999999999999999999999999999999999998553 22 7899
Q ss_pred cCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHH
Q 002414 765 LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLL 826 (926)
Q Consensus 765 l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l 826 (926)
+..||.||-..|. +.. +....+.|.+|+-++.|+++.|.+++.++|.++.=+.
T Consensus 72 ~~~gdlFg~~~l~---~~~------~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~ 124 (610)
T COG2905 72 LAAGDLFGFSSLF---TEL------NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFL 124 (610)
T ss_pred eccCccccchhhc---ccC------CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHH
Confidence 9999999988765 222 3456788889999999999999999999998876444
No 41
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.01 E-value=2.1e-09 Score=119.04 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHh
Q 002414 332 DFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMG 411 (926)
Q Consensus 332 ~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~ 411 (926)
+-+.-|..|+||++.|+|||||||.+|.|...++++.++.++|..+||.--|.+++=+.-+-. ++.+ =++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq~R-----QKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQHR-----QKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HHHH-----HHHHHh
Confidence 456779999999999999999999999999999999999999999999988887775542211 1112 246777
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 002414 412 FRKLSRDLQQKLRNYRQY 429 (926)
Q Consensus 412 ~~~lp~~L~~ri~~y~~~ 429 (926)
.++.--.|.+-.-+||.-
T Consensus 338 rr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hcchHHHHHHHHHHHHhc
Confidence 888888888888888763
No 42
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.00 E-value=4.8e-09 Score=117.47 Aligned_cols=119 Identities=18% Similarity=0.248 Sum_probs=104.4
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.+++.++|.|+.++++.+.+|...+....|.+||.|+..|.+..++|+|.+|.|+++..+|. .+..+..||.||-
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~-----v~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGE-----VLDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCe-----eeeeeccCccccc
Confidence 47889999999999999999999999999999999999999999999999999999886665 2689999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002414 540 ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFR 598 (926)
Q Consensus 540 ~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~ 598 (926)
.+++ +..+ ....+.|.+++.+|.|+++.|.++++++ |.++..|.
T Consensus 81 ~~l~---~~~~------~~~~~~aeedsl~y~lp~s~F~ql~~~n------~~f~~ff~ 124 (610)
T COG2905 81 SSLF---TELN------KQRYMAAEEDSLCYLLPKSVFMQLMEEN------PEFADFFL 124 (610)
T ss_pred hhhc---ccCC------CcceeEeeccceEEecCHHHHHHHHHhC------cHHHHHHH
Confidence 9884 2221 2456788889999999999999999999 77766554
No 43
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.95 E-value=1.1e-08 Score=108.38 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=78.0
Q ss_pred HHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCc
Q 002414 478 DDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPIS 557 (926)
Q Consensus 478 ~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r 557 (926)
..++.....+.|++|++|+.+||+++.+|+|++|.|+++..+.++.. ..+..+.+|++||+..- . ++
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e-~i~~~~~~Gd~fG~~~~------~------~~ 98 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRR-QIGAFHLPGDVFGLESG------S------TH 98 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcE-EEEEEecCCceecccCC------C------cC
Confidence 35567788899999999999999999999999999999976432222 23678899999996421 1 25
Q ss_pred ceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 558 SRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 558 ~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
..+++|+++|+++.+++++|.+++..+
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~ 125 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATD 125 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhC
Confidence 789999999999999999999999999
No 44
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.95 E-value=5.3e-09 Score=90.83 Aligned_cols=56 Identities=13% Similarity=0.263 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQ 390 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 390 (926)
..|..++||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999999999998875
No 45
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.88 E-value=2.8e-08 Score=102.08 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEE
Q 002414 492 ESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAF 570 (926)
Q Consensus 492 ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll 570 (926)
|+.|+++||+.+.+|+|.+|.|+++..+. |++ ..+..+++|++||+.+++ ...+ .++..+++|.++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e--~~l~~~~~g~~~G~~~~~---~~~~----~~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEE--ITVALLRENSVFGVLSLI---TGHR----SDRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcE--eeeEEccCCCEeeeeeec---cCCC----CccceEEEEecceEEE
Confidence 78999999999999999999999987643 333 247899999999998874 2211 1245789999999999
Q ss_pred EEeHHHHHHHHHHh
Q 002414 571 VLMSDNLRAVTSEL 584 (926)
Q Consensus 571 ~L~~~~f~~ll~~~ 584 (926)
.+++++|++++.++
T Consensus 72 ~i~~~~~~~l~~~~ 85 (193)
T TIGR03697 72 AVPIEQVEKAIEED 85 (193)
T ss_pred EeeHHHHHHHHHHC
Confidence 99999999999999
No 46
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.81 E-value=8.9e-08 Score=99.19 Aligned_cols=83 Identities=23% Similarity=0.274 Sum_probs=68.8
Q ss_pred hcEEEEeCCCCEEEccCC--ccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcce
Q 002414 483 YLKPVLYAEESHIVLEGD--RIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSR 559 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd--~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~ 559 (926)
.++.+.|++|++|+++|| +++.+|+|++|.|+++..+. |+.. .+..+.+|++||+.++. + . +++.
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~--~l~~~~~Gd~~G~~~~~---~-~------~~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNAL--TLRYVRPGEYFGEEALA---G-A------ERAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCeechHHhc---C-C------CCCc
Confidence 467789999999999999 77999999999999988653 3332 47889999999997652 2 1 2678
Q ss_pred EEEEcceEEEEEEeHHHH
Q 002414 560 TVRAATEVEAFVLMSDNL 577 (926)
Q Consensus 560 tv~A~t~~~ll~L~~~~f 577 (926)
+++|.++|+++.|++++|
T Consensus 73 ~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM 90 (202)
T ss_pred eEEEcCceEEEEEEHHHc
Confidence 899999999999999887
No 47
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.70 E-value=1.2e-08 Score=112.40 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhc
Q 002414 333 FPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGF 412 (926)
Q Consensus 333 ~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~ 412 (926)
..-.|..|+|+-+.||+||||||+..+|...++|.+|.++.|+.+||-.+..+..++.+-.+-.-+|+..-.. +|
T Consensus 285 hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgk-----kh 359 (1103)
T KOG1420|consen 285 HRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGK-----KH 359 (1103)
T ss_pred ccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCC-----ee
Confidence 3456999999999999999999999999999999999999999999999999999998776555444332100 00
Q ss_pred CCCC-HHHHHHHHHHHHHHHHh-hcCCC-HHHHHhcCChhHHHHHHHHHHHHHhcCCccccc
Q 002414 413 RKLS-RDLQQKLRNYRQYVWRE-TKGVD-VENLLNNLPSDLKRNIKSELGLELLLNVPLFQN 471 (926)
Q Consensus 413 ~~lp-~~L~~ri~~y~~~~~~~-~~~~~-e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~ 471 (926)
.-+= .-..+.|..|++-...+ ...+| |--.+...||+|.-+ -++.....++.+|++
T Consensus 360 ivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 360 IVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred EEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 0000 11123333343322222 23344 334567788887543 344555667777764
No 48
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2e-08 Score=111.26 Aligned_cols=132 Identities=20% Similarity=0.316 Sum_probs=115.2
Q ss_pred chhHHHHHhhhhcc--CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCC
Q 002414 681 DFRLAFRKMLMTDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGG 758 (926)
Q Consensus 681 d~~~~i~~~L~~~l--~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~ 758 (926)
|.+++|.-||.... ..|-|+--++.-+.+|+..++..+..+|+.|+..||.+|.+.||++|.+++.+.++
T Consensus 536 DMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-------- 607 (971)
T KOG0501|consen 536 DMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-------- 607 (971)
T ss_pred ccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCc--------
Confidence 77778888887666 88999999999999999999999999999999999999999999999999998774
Q ss_pred eEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 002414 759 FFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHT 829 (926)
Q Consensus 759 ~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~ 829 (926)
++++||+||+||++.-- +. ....+.++|+|++.|.+-.|.++.+..++.-+..+++-+-++.
T Consensus 608 --VVAILGKGDVFGD~FWK---~~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl 669 (971)
T KOG0501|consen 608 --VVAILGKGDVFGDEFWK---EN----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNL 669 (971)
T ss_pred --EEEEeecCccchhHHhh---hh----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhce
Confidence 78999999999987532 11 1235789999999999999999999999999998888776663
No 49
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.48 E-value=8.8e-09 Score=108.93 Aligned_cols=54 Identities=13% Similarity=0.279 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYL----IGNIQIYL 389 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~i----ig~i~~il 389 (926)
..-.+||+.+.||||+||||..|.|...++|..++.+.|+++.|.- ++|...|.
T Consensus 356 sIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 356 SIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred cCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 3447899999999999999999999999999999999999988874 45555554
No 50
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=98.41 E-value=8.3e-07 Score=99.81 Aligned_cols=315 Identities=16% Similarity=0.200 Sum_probs=172.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeee
Q 002414 447 PSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQ 526 (926)
Q Consensus 447 p~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~ 526 (926)
|+.+|.-.........|.....|+++-...++.+|...+++.++...++|+.|+.+.+.||+++|.|-|..
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g--------- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG--------- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec---------
Confidence 34444333332223567788899999999999999999999999999999999999999999999997643
Q ss_pred eeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHH--HHHHHhhHhHhHHHHHHHHHhhchhh
Q 002414 527 SGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLR--AVTSELSRRLCYKQLHHAFRVYSHQW 604 (926)
Q Consensus 527 ~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~--~ll~~~~~~l~~~~l~~~f~~~s~~~ 604 (926)
..+-|-.+||... . . .|+.++-.+++++..+++...=- ..++ |+....++.|.++
T Consensus 94 --qi~mp~~~fgkr~-----g----~---~r~~nclllq~semivid~~~e~q~n~ms---~~~p~rq~~~~~~------ 150 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT-----G----Q---NRTHNCLLLQESEMIVIDYPTEPQSNGMS---PRTPPRQIHHSGE------ 150 (1283)
T ss_pred --ceecCcccccccc-----c----c---ccccceeeecccceeeeecCCCccccccC---CCCCcccccccCC------
Confidence 3445556777642 1 1 27888888999999988543221 1111 1222222222222
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhhhhcCCCC---CCCcccccccchHHHHHHHHH-Hhccc----
Q 002414 605 RTWAACSIQAAWRRYKRRNLEEFLNAE-----ENRLQGEWAAGGGI---TSSLGATIYPSRFAAHALLAA-QSNRS---- 671 (926)
Q Consensus 605 ~~~~~~~~q~~~~~~~~~~~~~~l~~~-----e~r~~~~~~~~~~~---~~~~~~~~~as~~~~~~~~~~-~~~~~---- 671 (926)
.+ -|..=+... .......... -.++.-.....|.. +.+-+...+++---.+.+-.+ ++..+
T Consensus 151 -~v----~~k~erks~-~~~~~~~a~~slPad~tklhLt~~phPqvthvSSS~SgcSi~sdsGsSsLsdiyqatEsevGd 224 (1283)
T KOG3542|consen 151 -PV----HQKTERKSA-PNMSVDIAMPSLPADPTKLHLTQTPHPQVTHVSSSSSGCSINSDSGSSSLSDIYQATESEVGD 224 (1283)
T ss_pred -cc----ccccccccC-CccchhccCCCCCCCcccccCCCCCCCCCceeccCCCCCceeCCCCchHHHHHHHHhhccccc
Confidence 00 000000000 0000000000 00000000000000 000000011111000011100 00000
Q ss_pred ----ccCCCCCC----------------c----ch-------------hHHHHHhhhhccCCccccCCCHHHHHHHHhhc
Q 002414 672 ----LLLQKPAE----------------P----DF-------------RLAFRKMLMTDFKMPLFQSLDAKTLDDICIYL 714 (926)
Q Consensus 672 ----~~~~kp~~----------------p----d~-------------~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~ 714 (926)
.++..|.+ | |. -.+|.+.|...-++|-|.+|+-....+||..+
T Consensus 225 idl~rLpEtavDSedDe~e~e~ierssdplm~RD~VReCLEKeP~drtddDieqLLeFMhqlpAFAnmtMSvrReLC~vM 304 (1283)
T KOG3542|consen 225 IDLARLPETAVDSEDDEGEMESIERSSDPLMDRDSVRECLEKEPSDRTDDDIEQLLEFMHQLPAFANMTMSVRRELCLVM 304 (1283)
T ss_pred cccccCCCCCCCcccccccchhhhhcCCCccchHHHHHHHhcCCcccchHHHHHHHHHHHhchHhhcccHHHHHHHHHHH
Confidence 11111100 0 11 11344333322299999999999999998876
Q ss_pred ce-EEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCcc
Q 002414 715 KP-VLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTR 793 (926)
Q Consensus 715 ~~-~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~ 793 (926)
.. ..=.+|++|+..|+..|..++|++|+|++++.+ |+ ...+.-|+-||-+--. +.. -...
T Consensus 305 vFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd-------Gk---~e~l~mGnSFG~~PT~---dkq------ym~G 365 (1283)
T KOG3542|consen 305 VFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD-------GK---REELKMGNSFGAEPTP---DKQ------YMIG 365 (1283)
T ss_pred HHHHHhhcCeEEecCCcccceeEEEecceEEEecCC-------Cc---eEEeecccccCCCCCc---chh------hhhh
Confidence 64 334689999999999999999999999999886 33 3456779999944210 000 0011
Q ss_pred EE-EEccceEEEEEcHHHHHHHHHHc
Q 002414 794 TV-VARTEVEAFALTTDDLKAVASKS 818 (926)
Q Consensus 794 tv-~Al~~~e~~~l~~~dl~~l~~~~ 818 (926)
-+ +-+.||+..+|...|+-.++.+.
T Consensus 366 ~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 366 EMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred hhheecccceEEEeehhhHHHHHHHH
Confidence 11 34789999999999999887763
No 51
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.05 E-value=5e-05 Score=86.10 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYL 389 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 389 (926)
.+..|+||++.|+|||||||+.|.+...++++++++++|..+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999998877644
No 52
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.87 E-value=2.9e-06 Score=71.79 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=36.7
Q ss_pred Ccccccccccccccc---ceeeCCCCcc---hHHHHHHHHHHHHhhccceeeec
Q 002414 55 PKSRYGIVGKSMLYL---KIVLSPHGPL---WNWIFLISCLIAISLDPLFLYIP 102 (926)
Q Consensus 55 ~~~~~~~~~e~~~~~---~~ii~P~s~~---Wd~~~~i~~i~~~~~~P~~~~~~ 102 (926)
|+++ +..|..+.. .+||||+|+| ||++|+++++++++++|+.++|.
T Consensus 20 S~~a--i~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 20 SKKA--IEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred cHHH--HHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 4445 545544433 6899999999 99999999999999999987653
No 53
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.82 E-value=7.1e-05 Score=82.70 Aligned_cols=56 Identities=16% Similarity=0.387 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhhhccCCCc--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNL--QTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQ 390 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGd--i~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 390 (926)
..+..+|+|++.|+||+|||. ++|....-.++.++-+++|+++.|+++|.+-+=++
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~s 140 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFS 140 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999998 67888888888889999999999999988766443
No 54
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00052 Score=75.84 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhc
Q 002414 333 FPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGF 412 (926)
Q Consensus 333 ~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~ 412 (926)
....|+.++|....|..++||||+.|.|...+..+++.-++|+++.|.+|+-++.-+. ...--..+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 5667999999999999999999999999999999999999999999999987776553 33333468899998
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 002414 413 RKLSRDLQQKLRNYRQYVWRE 433 (926)
Q Consensus 413 ~~lp~~L~~ri~~y~~~~~~~ 433 (926)
.++.+++++-..+=++..|.-
T Consensus 356 tqLTk~~KnAAA~VLqeTW~i 376 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWLI 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877753
No 55
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0012 Score=76.46 Aligned_cols=60 Identities=17% Similarity=0.366 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIR 395 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 395 (926)
-+..|+|++.+++||+|||++.|.|...++++|+..++|+-++..++++++..+...-..
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999988765443
No 56
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.84 E-value=0.0016 Score=74.14 Aligned_cols=117 Identities=15% Similarity=0.258 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEe-CCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEe
Q 002414 453 NIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLY-AEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYL 531 (926)
Q Consensus 453 ~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~-~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l 531 (926)
+-..+...+++.+.|-|.+++-....+||..|....+ .+|.+|...|+.-|..++|++|.|+|...+|.. ..+
T Consensus 273 ddDieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l 346 (1283)
T KOG3542|consen 273 DDDIEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EEL 346 (1283)
T ss_pred hHHHHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEe
Confidence 3334455789999999999999999999999876655 689999999999999999999999999998876 577
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcceEE-EEcceEEEEEEeHHHHHHHHHHh
Q 002414 532 SAGDYYGEELISWALDPNSSHYLPISSRTV-RAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 532 ~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv-~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.-|+.||...- .+.+. -.--+ .-+.+|+..+|...||-.++...
T Consensus 347 ~mGnSFG~~PT---~dkqy------m~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 347 KMGNSFGAEPT---PDKQY------MIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred ecccccCCCCC---cchhh------hhhhhheecccceEEEeehhhHHHHHHHH
Confidence 88999996532 12111 00111 34689999999999999998766
No 57
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.73 E-value=0.045 Score=55.92 Aligned_cols=107 Identities=9% Similarity=0.102 Sum_probs=78.0
Q ss_pred HHHHHHhhcceEEeCCCCEE-EccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCC
Q 002414 706 TLDDICIYLKPVLYEKKSWI-FREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQS 784 (926)
Q Consensus 706 ~l~~l~~~~~~~~~~~g~~I-~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s 784 (926)
..+.+....++..+++|..+ .-+....+.+++|.+|.|.+...+ + ..+....+.-+||=.... .+.
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d-------~--ll~~t~~aP~IlGl~~~~---~~~- 80 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREE-------N--VLIGITQAPYIMGLADGL---MKN- 80 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecC-------C--eEEEeccCCeEeeccccc---CCC-
Confidence 44566778888999999997 544444477999999999994221 2 577788888899922111 121
Q ss_pred CCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002414 785 SFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWAACSIQ 846 (926)
Q Consensus 785 ~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q 846 (926)
......+|.++|+++.++.+++.+++.+ -+-|+.++.+.+.
T Consensus 81 -----~~~~~l~ae~~c~~~~i~~~~~~~iie~----------------~~LW~~~~~~l~~ 121 (207)
T PRK11832 81 -----DIPYKLISEGNCTGYHLPAKQTITLIEQ----------------NQLWRDAFYWLAW 121 (207)
T ss_pred -----CceEEEEEcCccEEEEeeHHHHHHHHHH----------------hchHHHHHHHHHH
Confidence 2346899999999999999999999998 5566666665544
No 58
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.62 E-value=0.06 Score=55.04 Aligned_cols=95 Identities=7% Similarity=-0.039 Sum_probs=70.3
Q ss_pred HHHHHHhhcEEEEeCCCCEE-EccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCC
Q 002414 476 TLDDICSYLKPVLYAEESHI-VLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYL 554 (926)
Q Consensus 476 ~l~~l~~~l~~~~~~~ge~I-~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~ 554 (926)
..+.+.....+..+++|..+ +.+....+.+++|.+|.|.+.. .++- .+.+...-..||-.... .+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~l----l~~t~~aP~IlGl~~~~---~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EENV----LIGITQAPYIMGLADGL---MKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCCe----EEEeccCCeEeeccccc---CCCC----
Confidence 45566667778899999997 4444444679999999999953 3332 35677777888865432 2221
Q ss_pred CCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 555 PISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 555 ~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
....++|.++|+++.++.++|.+++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~ 109 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQN 109 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHh
Confidence 3468999999999999999999999988
No 59
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.38 E-value=0.14 Score=49.10 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=81.3
Q ss_pred CCHHHHHHHHhh-cceEEeCCCCEEEccC-CCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhc
Q 002414 702 LDAKTLDDICIY-LKPVLYEKKSWIFREG-RPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWA 779 (926)
Q Consensus 702 l~~~~l~~l~~~-~~~~~~~~g~~I~~eG-d~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~ 779 (926)
.+......|+.. .+.....+|+.---|| .+.|.+-++++|++++...+ . .+..+.|-+|..-= -|.
T Consensus 15 Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g--------~--fLH~I~p~qFlDSP--EW~ 82 (153)
T PF04831_consen 15 VSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG--------R--FLHYIYPYQFLDSP--EWE 82 (153)
T ss_pred CCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC--------E--eeEeecccccccCh--hhh
Confidence 567777788766 7789999999998888 66799999999999999543 2 56667888776511 111
Q ss_pred cCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHH
Q 002414 780 LDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKL 825 (926)
Q Consensus 780 l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~ 825 (926)
.... .....-..|++|.++|..+.-+++.|+.++...|.+..-+
T Consensus 83 s~~~--s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF 126 (153)
T PF04831_consen 83 SLRP--SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVF 126 (153)
T ss_pred cccc--CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHH
Confidence 0000 1112347899999999999999999999999988665433
No 60
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.17 E-value=0.15 Score=48.85 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHhh-cEEEEeCCCCEEEccCC-ccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCC
Q 002414 471 NLDAKTLDDICSY-LKPVLYAEESHIVLEGD-RIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDP 548 (926)
Q Consensus 471 ~l~~~~l~~l~~~-l~~~~~~~ge~I~~eGd-~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~ 548 (926)
+.+....+.|+.. .+...+.+|+.-.-||. +.|.+-++++|.+.|... +. .+..+.|-++......- ...+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~----fLH~I~p~qFlDSPEW~-s~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GR----FLHYIYPYQFLDSPEWE-SLRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CE----eeEeecccccccChhhh-cccc
Confidence 4578888888877 66778999999888885 778999999999998763 22 25677777776654431 1111
Q ss_pred CCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHH
Q 002414 549 NSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFR 598 (926)
Q Consensus 549 ~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~ 598 (926)
.. ...-..|+.|.++|..++.+|+.+..++... |-++..|.
T Consensus 87 s~---~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~------~~L~~vF~ 127 (153)
T PF04831_consen 87 SE---DDKFQVTITAEEDCRYLCWPREKLYLLLAKD------PFLAAVFS 127 (153)
T ss_pred CC---CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC------HHHHHHHH
Confidence 11 1124679999999999999999999999988 66666555
No 61
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.01 E-value=0.19 Score=60.50 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=54.2
Q ss_pred ceeeCCCCcc------------hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchH-HHHHHHHHHHHHHHH
Q 002414 70 KIVLSPHGPL------------WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAA-IFLRSFLDFFHIIYV 136 (926)
Q Consensus 70 ~~ii~P~s~~------------Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~f~iDi 136 (926)
..++.|+++| +|.+++++++.+++++.+.- |.++ .......+ .+-++|+-.+|++++
T Consensus 1104 ~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer--p~i~--------~~s~EriFltlsnyIFtaIfV~Em 1173 (1956)
T KOG2302|consen 1104 KYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER--PAIV--------EGSTERIFLTLSNYIFTAIFVVEM 1173 (1956)
T ss_pred HHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc--cccc--------cCcceEEEEEecchHHHHHHHHHH
Confidence 6789999988 78888888888888776641 1111 11122222 333588999999999
Q ss_pred Hhhhc-eeEecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHh
Q 002414 137 IFRLR-TKSFAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLA 178 (926)
Q Consensus 137 ~l~f~-t~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls 178 (926)
.++-. .|.+- | -..|+++ |=.+|.+-
T Consensus 1174 ~lKVVALGl~f-------g---------e~aYl~ssWN~LDgfl 1201 (1956)
T KOG2302|consen 1174 TLKVVALGLYF-------G---------EQAYLRSSWNVLDGFL 1201 (1956)
T ss_pred HHHHHhhhhcc-------c---------hHHHHHHHHHhhhHHH
Confidence 88766 34332 2 2469987 87777543
No 62
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.071 Score=56.96 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhccCCCccccC-------chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSS-------YFWEN-FFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~-------~~~E~-~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
|+.|+|+.+.|+||+|+||..+- +-.+. .++.+.+++|+.+++-+++-+.--+..++.
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999998763 23344 455666788988888777666555544443
No 63
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.054 Score=59.22 Aligned_cols=60 Identities=15% Similarity=0.352 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhhhccCCCcccc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTS--SYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p--~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
.-+..||-|++-|=||+|||--.+ .-..-++..++-+|+|+++-|+++|.+-+=+..-.+
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkK 172 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKK 172 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 346678899999999999997543 345556666777899999999999988776654433
No 64
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.43 E-value=0.008 Score=63.94 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=44.4
Q ss_pred cCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 002414 330 VTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLI 382 (926)
Q Consensus 330 ~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~ii 382 (926)
....-.++.-||||+.+.+||+|||-.+|.|...++|+|+..++|+-+--..+
T Consensus 74 ~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmF 126 (350)
T KOG4404|consen 74 KAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMF 126 (350)
T ss_pred ccccccccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHH
Confidence 34455578889999999999999999999999999999999999875544333
No 65
>PLN03223 Polycystin cation channel protein; Provisional
Probab=94.06 E-value=3.5 Score=52.45 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhc
Q 002414 117 LGTAAIFLRSFLDFFHIIYVIFRLR 141 (926)
Q Consensus 117 ~~~~~~~~~~~~d~~f~iDi~l~f~ 141 (926)
....|.++++++-++-+.=|++-|.
T Consensus 1211 FKSfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1211 FLSGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888887777777776553
No 66
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=91.06 E-value=0.055 Score=62.56 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhH--------HHHHHHHHHHHHHHHHHH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWEN--------FFAIVITISGLVFFLYLI 382 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~--------~~~i~~~i~G~~~fa~ii 382 (926)
.-|+.|+|+++.++||||+||+.|.+.... .+..+..++|...++.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 458899999999999999999999988755 577778888888877766
No 67
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=89.12 E-value=0.75 Score=52.07 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISG 374 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G 374 (926)
.+.|+|+.+.|++||||||..|....-.++.++++-+.
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icva 255 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVA 255 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHH
Confidence 35788999999999999999998666655544433333
No 68
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.82 E-value=8.4 Score=51.18 Aligned_cols=47 Identities=4% Similarity=0.139 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHhhccH
Q 002414 117 LGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLAILPL 182 (926)
Q Consensus 117 ~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~ 182 (926)
...++...|.+.-.+|.+.++++... .|-.. |+++ |.++|++-++-.
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia----------~Gf~~---------y~rn~w~~lDf~Vv~vs 917 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA----------YGFFF---------YFRNAWNWLDFVVVIVS 917 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----------hHHHH---------HHhhHHhhhhHHHhhhH
Confidence 34567888999999999999997642 23222 9998 999999876554
No 69
>COG4709 Predicted membrane protein [Function unknown]
Probab=77.11 E-value=11 Score=37.78 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--hcCCCHHHHHhcC--ChhHHHHHHHHHHHHHhcCCcccccCCHH
Q 002414 401 LKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRE--TKGVDVENLLNNL--PSDLKRNIKSELGLELLLNVPLFQNLDAK 475 (926)
Q Consensus 401 ~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~--~~~~~e~~ll~~L--p~~Lr~~i~~~l~~~~L~~i~lF~~l~~~ 475 (926)
+-++++++|++ ++|++.+..+..||+-++.+ ..|.+|+++..+| |.++-.|+..+.-.+-.+.-|-+.+.+..
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 45678888984 89999999999999877765 3677899999998 77777777776666666666666665543
No 70
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=76.05 E-value=3.8 Score=25.53 Aligned_cols=17 Identities=41% Similarity=0.540 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002414 841 AACSIQAAWSQYKLQKL 857 (926)
Q Consensus 841 ~~~~~q~~~~r~~~~~~ 857 (926)
|++.||+.||.|..|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78999999999987764
No 71
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=75.51 E-value=4.8 Score=33.26 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=32.8
Q ss_pred EEeCCCCEEEccCCccC-eEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 487 VLYAEESHIVLEGDRID-GMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 487 ~~~~~ge~I~~eGd~~~-~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
..++||+.+-..-.+.. ++++|++|++.+. .++.. ..+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~~~------~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDGER------VELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETTEE------EEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-EccEE------eEccCCEEE
Confidence 56788887665555555 9999999999987 44432 688898875
No 72
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.20 E-value=40 Score=45.17 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHhhccHhHH
Q 002414 117 LGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLAILPLPQV 185 (926)
Q Consensus 117 ~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i 185 (926)
........+.++-.+|.+++.+.... .+ -+.|+++ |-++|.+=+. +..+
T Consensus 471 ~~~~l~~~~~vF~~lF~~Em~~ki~a--l~-----------------~~~yF~~~~n~fD~~iv~-l~~~ 520 (1592)
T KOG2301|consen 471 RNYLLYLGNVVFTGLFTVEMILKIYA--LG-----------------PRNYFRRGWNIFDLIIVL-LSLL 520 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--cC-----------------cHHHHhhhcchheEEEEe-hhhH
Confidence 34566777788888888888887641 22 2457776 8899988877 5443
No 73
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.68 E-value=1.2e+02 Score=37.16 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=52.8
Q ss_pred hccCCCccccCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHHHHhcCCCCHHHHH
Q 002414 349 SCFGQNLQTSSY------FWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRS-EEMRLKGQEIEQWMGFRKLSRDLQQ 421 (926)
Q Consensus 349 ttvGyGdi~p~~------~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 421 (926)
.|+|+||..... ..-.+|.+++.++.+.++-.+|+-|++......... ++.+.+. ...-.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~-A~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW-AATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 679999986432 345666777777788888888888888887776666 4444443 33445667899999888
Q ss_pred HHH
Q 002414 422 KLR 424 (926)
Q Consensus 422 ri~ 424 (926)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 743
No 74
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=64.87 E-value=3.6e+02 Score=33.82 Aligned_cols=33 Identities=15% Similarity=0.015 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002414 361 FWENFFAIVITISGLVFFLYLIGNIQIYLQSKT 393 (926)
Q Consensus 361 ~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 393 (926)
.+-.+|.+++.+..+++.-.+|+-|....+...
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~ 619 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIA 619 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555555555555555556655555555443
No 75
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=64.67 E-value=11 Score=31.13 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=33.2
Q ss_pred EEeCCCCEEEccCCCCC-eEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 717 VLYEKKSWIFREGRPVD-KTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 717 ~~~~~g~~I~~eGd~~~-~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
..+++|+..-..-.+.. .+++|++|++.+. .+ + ....+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-------~---~~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-------G---ERVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-------T---EEEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-------c---EEeEccCCEEEE
Confidence 45778887766666666 9999999999998 33 1 256789998643
No 76
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=63.57 E-value=32 Score=32.57 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=43.1
Q ss_pred EEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEc
Q 002414 485 KPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAA 564 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~ 564 (926)
....++||..+-..-....++++|++|++.+...++++ ...|.+||.+--.+ . ..-.+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~-------~-------~~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDK-------H-------DRHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECC-------C-------CcEEEEcC
Confidence 44578888755332112247999999999987333233 27899999875322 1 12344545
Q ss_pred ceEEEEEEe
Q 002414 565 TEVEAFVLM 573 (926)
Q Consensus 565 t~~~ll~L~ 573 (926)
++++++++-
T Consensus 99 e~~~~l~v~ 107 (125)
T PRK13290 99 EDMRLVCVF 107 (125)
T ss_pred CCEEEEEEE
Confidence 787777653
No 77
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=62.05 E-value=12 Score=31.79 Aligned_cols=42 Identities=17% Similarity=0.167 Sum_probs=29.2
Q ss_pred eCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 489 YAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 489 ~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
..||..-..-. .+++.+|++|+|.+...+|.. ..+++||.|=
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~~G~~------~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDEDGET------VTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEETTTEE------EEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEECCCCE------EEEcCCcEEE
Confidence 45665443322 288999999999987654433 7889999873
No 78
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=61.78 E-value=33 Score=33.73 Aligned_cols=75 Identities=9% Similarity=0.251 Sum_probs=45.7
Q ss_pred cEEEEe-CCCCEE-EccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEE
Q 002414 484 LKPVLY-AEESHI-VLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTV 561 (926)
Q Consensus 484 l~~~~~-~~ge~I-~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv 561 (926)
++...+ .||+.- ++..+ .+++|++++|.+.+...++++. ....+++||+|= +.+.. ..+-
T Consensus 29 ~~v~~vgGpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~---~~v~L~eGd~fl-------vP~gv-------pHsP 90 (159)
T TIGR03037 29 FMVTVVGGPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKR---EDVPIREGDIFL-------LPPHV-------PHSP 90 (159)
T ss_pred EEEEEeCCCCCCcccccCC-CceEEEEEcceEEEEEEcCCcE---EEEEECCCCEEE-------eCCCC-------Cccc
Confidence 333344 444443 55533 7899999999999987776542 237889999873 22111 1233
Q ss_pred EEcceEEEEEEeHHH
Q 002414 562 RAATEVEAFVLMSDN 576 (926)
Q Consensus 562 ~A~t~~~ll~L~~~~ 576 (926)
++..+|.++.|.+..
T Consensus 91 ~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 91 QRPAGSIGLVIERKR 105 (159)
T ss_pred ccCCCcEEEEEEeCC
Confidence 445667777776553
No 79
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=58.58 E-value=48 Score=33.44 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--hcCCCHHHHHhcC--ChhHHHHHHHH
Q 002414 400 RLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRE--TKGVDVENLLNNL--PSDLKRNIKSE 457 (926)
Q Consensus 400 ~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~--~~~~~e~~ll~~L--p~~Lr~~i~~~ 457 (926)
++-+++++++++ ++|++-++++.+||+-+..+ ..|.+|++++++| |.++-+++..+
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 345677888886 59999999999999988875 4577899999998 66666666544
No 80
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=57.83 E-value=14 Score=24.21 Aligned_cols=19 Identities=53% Similarity=0.602 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 002414 839 TWAACSIQAAWSQYKLQKL 857 (926)
Q Consensus 839 ~~~~~~~q~~~~r~~~~~~ 857 (926)
+-++..||+.||+|..|+.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578999999999987764
No 81
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.15 E-value=5.7e+02 Score=32.54 Aligned_cols=76 Identities=13% Similarity=0.290 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhhccceeeeccccCccccccccc--cccchHHHHHHHHHHHHHHHHHhhhc-eeEecCCCCCCCCeE
Q 002414 80 WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDN--KLGTAAIFLRSFLDFFHIIYVIFRLR-TKSFAPCWEYPQRSL 156 (926)
Q Consensus 80 Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~f~iDi~l~f~-t~y~~~~~~~~~g~l 156 (926)
++.+-+++++.++...-.| +.|-.++- ..-..+.+++-++-+||.++|++++. .|.+.
T Consensus 81 fe~vsmlvillncvtlgmf---------rpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifg---------- 141 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMF---------RPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFG---------- 141 (1956)
T ss_pred HHHHHHHHHHHhhhhhccc---------ccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 4666677777777664433 22332221 11246788888999999999999987 56665
Q ss_pred eccHHHHHHHHhhh-hhhhHHHhhcc
Q 002414 157 NEYAQEITRKYLLF-FLPIDLLAILP 181 (926)
Q Consensus 157 V~d~~~Ia~~Yl~~-~F~iDlls~lP 181 (926)
.|-||-. |=-+|+.-++.
T Consensus 142 -------kkcylgdtwnrldffiv~a 160 (1956)
T KOG2302|consen 142 -------KKCYLGDTWNRLDFFIVMA 160 (1956)
T ss_pred -------ccccccCchhhhhhhheeh
Confidence 3457754 76677655544
No 82
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=52.15 E-value=19 Score=25.67 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002414 840 WAACSIQAAWSQYKLQKLQ 858 (926)
Q Consensus 840 ~~~~~~q~~~~r~~~~~~~ 858 (926)
.|+..||.-|+++++|+..
T Consensus 10 YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988864
No 83
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=51.98 E-value=75 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=16.0
Q ss_pred HHHHHHhhhHh---HHHHHHHHHHHHHHHh
Q 002414 385 IQIYLQSKTIR---SEEMRLKGQEIEQWMG 411 (926)
Q Consensus 385 i~~il~~~~~~---~~~~~~~~~~i~~~m~ 411 (926)
+-.++++.+.. ..++++|++++-+.+.
T Consensus 27 IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 27 IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 44444443332 2358888888877664
No 84
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=50.72 E-value=16 Score=35.06 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=51.4
Q ss_pred ChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHh
Q 002414 332 DFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMG 411 (926)
Q Consensus 332 ~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~ 411 (926)
........++|+.+.+++. +-++..|.+...+++.+++.++++++.+..-|++++++..... ...++.+++..+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~-----~~~i~sl~dL~~ 113 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY-----EPPIDSLEDLAN 113 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----TSS-SSHHHHHT
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----CCCCCCHHHHHH
Confidence 3455677888888888876 4457889999999999999999999999999999999875432 223444555554
Q ss_pred cC
Q 002414 412 FR 413 (926)
Q Consensus 412 ~~ 413 (926)
..
T Consensus 114 ~~ 115 (148)
T PF00060_consen 114 SG 115 (148)
T ss_dssp HS
T ss_pred CC
Confidence 44
No 85
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=45.10 E-value=54 Score=32.30 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=38.8
Q ss_pred CCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHH
Q 002414 731 PVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTD 809 (926)
Q Consensus 731 ~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~ 809 (926)
+.++++++++|.+.+...+ ++++....+++||+|= -|. ....+-++..++.++.|.+.
T Consensus 47 ~tdE~FyqleG~~~l~v~d-------~g~~~~v~L~eGd~fl--------vP~------gvpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 47 PGEEFFYQLKGEMYLKVTE-------EGKREDVPIREGDIFL--------LPP------HVPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred CCceEEEEEcceEEEEEEc-------CCcEEEEEECCCCEEE--------eCC------CCCcccccCCCcEEEEEEeC
Confidence 3799999999999998665 2334467899999864 222 11233444567777777665
No 86
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=44.49 E-value=31 Score=29.24 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=23.6
Q ss_pred CeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 733 DKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 733 ~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+++.+|++|++.+...+ | ....++|||.|=
T Consensus 26 ~E~~~vleG~v~it~~~-------G---~~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITDED-------G---ETVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEETT-------T---EEEEEETTEEEE
T ss_pred CEEEEEEEeEEEEEECC-------C---CEEEEcCCcEEE
Confidence 88999999999998543 2 246789999865
No 87
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=44.06 E-value=54 Score=30.94 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=39.5
Q ss_pred cEEEEeCCCCEEEccCCc-cCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechh
Q 002414 484 LKPVLYAEESHIVLEGDR-IDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEE 540 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~-~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~ 540 (926)
+....+.||+.+-.--.+ .+...+|++|.+.+... +.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g~~------~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-GEK------KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec-CCc------eEecCCCEEEEC
Confidence 446678999998776666 77999999999998775 332 788999998654
No 88
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=43.66 E-value=66 Score=31.08 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=40.4
Q ss_pred hcceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 713 YLKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.+....+++|...-..--+ .+++++|++|+..+...+. ++++.....+.+||.+=
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~-----~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDP-----NGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeC-----CCCeEEEEEecCCCEEE
Confidence 3455677888876555433 6789999999999986542 24567788899999754
No 89
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=43.58 E-value=1.1e+02 Score=28.94 Aligned_cols=48 Identities=6% Similarity=0.102 Sum_probs=32.4
Q ss_pred ceEEeCCCCEEEccCCCCCeEEEEEeeEEEEE-EeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIFREGRPVDKTLFIMQGKLDSM-TSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~-~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
....+++|+.+-..-....++++|++|++.+. ..+ + ....|++||.+-
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~-------g---~~~~L~aGD~i~ 86 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT-------G---EVHPIRPGTMYA 86 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC-------C---EEEEeCCCeEEE
Confidence 34577888765333222247999999999998 322 1 246799999866
No 90
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=43.13 E-value=39 Score=31.00 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHHHh----------hcCCCHHHHHhcCChhHHHHHHHH
Q 002414 414 KLSRDLQQKLRNYRQYVWRE----------TKGVDVENLLNNLPSDLKRNIKSE 457 (926)
Q Consensus 414 ~lp~~L~~ri~~y~~~~~~~----------~~~~~e~~ll~~Lp~~Lr~~i~~~ 457 (926)
-||+++|..|..++.-.-.. ....|.-.++..||++||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 58999999999988765332 233456789999999999998654
No 91
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=36.95 E-value=61 Score=32.48 Aligned_cols=70 Identities=10% Similarity=0.213 Sum_probs=43.9
Q ss_pred CCCC-EEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEE
Q 002414 490 AEES-HIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVE 568 (926)
Q Consensus 490 ~~ge-~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ 568 (926)
-||+ .-++- ++.+++|++++|.+.+...++++.. ...+++||+|= +.+.. ..+-++..+|.
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl-------lP~gv-------pHsP~r~~~tv 103 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL-------LPPHV-------PHSPQREAGSI 103 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE-------eCCCC-------CcCCccCCCeE
Confidence 5553 33344 5678999999999998887665321 37889999873 22211 11223457777
Q ss_pred EEEEeHHHH
Q 002414 569 AFVLMSDNL 577 (926)
Q Consensus 569 ll~L~~~~f 577 (926)
.+.+.+..-
T Consensus 104 ~LviE~~r~ 112 (177)
T PRK13264 104 GLVIERKRP 112 (177)
T ss_pred EEEEEeCCC
Confidence 777765543
No 92
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=35.03 E-value=88 Score=31.40 Aligned_cols=61 Identities=8% Similarity=0.142 Sum_probs=41.3
Q ss_pred CCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHH
Q 002414 730 RPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTD 809 (926)
Q Consensus 730 d~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~ 809 (926)
++.++++++++|.+.+...+ ++++....+++||+|= -|. .-..+-++..+|.++.|.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d-------~g~~~~v~L~eGd~fl--------lP~------gvpHsP~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE-------DGKRRDVPIREGEMFL--------LPP------HVPHSPQREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEc-------CCceeeEEECCCCEEE--------eCC------CCCcCCccCCCeEEEEEEeC
Confidence 56799999999999998765 2233457799999864 222 11223345688888888766
Q ss_pred HH
Q 002414 810 DL 811 (926)
Q Consensus 810 dl 811 (926)
.-
T Consensus 111 r~ 112 (177)
T PRK13264 111 RP 112 (177)
T ss_pred CC
Confidence 43
No 93
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=34.60 E-value=1.9e+02 Score=32.99 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 333 FPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 333 ~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
..--|+-+|-+++..+.+++-++....-..=..+++++.+++++.|-+.|..++..++--+.
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~i 158 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNI 158 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 45578889999999998888877633222238888888888999999999888887764443
No 94
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=34.38 E-value=2.7e+02 Score=27.43 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhh
Q 002414 119 TAAIFLRSFLDFFHIIYVIFRL 140 (926)
Q Consensus 119 ~~~~~~~~~~d~~f~iDi~l~f 140 (926)
.+|.++|.++-+...++.++..
T Consensus 31 ~~~~~~d~~~~~~~~~~~~~~~ 52 (200)
T PF00520_consen 31 SWWNWFDFISVIPSIVSVILRS 52 (200)
T ss_dssp SHHHHHHHHHHHHHCCHHCCHC
T ss_pred Chhhcccccccccccccccccc
Confidence 4667777777666666665544
No 95
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=33.74 E-value=97 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHhhcceEEeCCCCEEEccC---------CCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 709 DICIYLKPVLYEKKSWIFREG---------RPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 709 ~l~~~~~~~~~~~g~~I~~eG---------d~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.|-+.+-...|--+=.++.+| ...++|+.|++|+..+...+ ....++|||+.|
T Consensus 32 ~lG~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~-----------~e~~lrpGD~~g 93 (161)
T COG3837 32 RLGDALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDG-----------GETRLRPGDSAG 93 (161)
T ss_pred hhhhhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECC-----------eeEEecCCceee
Confidence 344444444444555555555 44689999999999988543 245799999988
No 96
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.27 E-value=1.1e+02 Score=28.87 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=34.7
Q ss_pred hcEEEEeCCCCEE-EccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 483 YLKPVLYAEESHI-VLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 483 ~l~~~~~~~ge~I-~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
.+....+++|+-+ .+--...+++|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 4556678888885 55455578999999999998764 32 2577888775
No 97
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=32.88 E-value=78 Score=37.42 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQ 390 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 390 (926)
-..-.++||+-..|..-|-|.-+|.+..-+++.+++.=+.+++-|--.+|+++.+-
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 34557899998899999999999999999999998887777777777777777653
No 98
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=31.81 E-value=1.1e+02 Score=28.81 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=33.9
Q ss_pred hcceEEeCCCCEE-EccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCee
Q 002414 713 YLKPVLYEKKSWI-FREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLC 771 (926)
Q Consensus 713 ~~~~~~~~~g~~I-~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~f 771 (926)
..+...+++|+-+ .+--...+.+|+|++|+..+...+ ....+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-----------~~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-----------EEVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-----------EEEEecCCCEE
Confidence 4556667777775 333444799999999999998653 24567888864
No 99
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=30.31 E-value=1.3e+02 Score=31.33 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=49.7
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhh----hhhccCCC---CC
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEEL----LTWALDPQ---SS 785 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~----L~~~l~~~---s~ 785 (926)
.++...+.+|+..-.+-...+.+++++.|++.+.... +.||++. .+ +.. +.
T Consensus 30 GF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g-------------------~~f~~iG~R~SvF---e~~p~~~v 87 (270)
T COG3718 30 GFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG-------------------STFGEIGTRMSVF---ERKPPDSV 87 (270)
T ss_pred EEEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc-------------------chHhhcccccccc---cCCCCCeE
Confidence 3566778899998888888889999999999998543 2233221 11 110 00
Q ss_pred CCCCCCccEEEEccceEEEEEcHHH
Q 002414 786 FRPPNSTRTVVARTEVEAFALTTDD 810 (926)
Q Consensus 786 ~~~~~~~~tv~Al~~~e~~~l~~~d 810 (926)
.--.-++.+++|.+++++..-.+..
T Consensus 88 Yvp~g~~~~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 88 YVPAGSAFSVTATTDLEVAVCSAPG 112 (270)
T ss_pred EecCCceEEEEeecceEEEEEeCCC
Confidence 0001468899999999887766654
No 100
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=30.10 E-value=2.8e+02 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=16.0
Q ss_pred cHHHHHHHHhhh-hhhhHHHhhc
Q 002414 159 YAQEITRKYLLF-FLPIDLLAIL 180 (926)
Q Consensus 159 d~~~Ia~~Yl~~-~F~iDlls~l 180 (926)
+-++..++|+++ |-++|++.++
T Consensus 231 ~i~~~g~~y~~~~WN~~e~~ii~ 253 (425)
T PF08016_consen 231 KIRREGRAYFKSFWNWLELLIIL 253 (425)
T ss_pred HHHHhhhHHhhhcCcHHHHHHHH
Confidence 334445789998 8899988765
No 101
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=29.58 E-value=1.6e+02 Score=28.38 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=35.9
Q ss_pred cEEEEeCCCCEEEccCCc-cCeEEEEEeeEEEEEEeeCC-eeeeeeeeEeCCCCeec
Q 002414 484 LKPVLYAEESHIVLEGDR-IDGMLFVMRGKLWSATMVGG-RMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~-~~~ly~I~~G~v~v~~~~~~-~~~~~~v~~l~~G~~FG 538 (926)
+....+.||...-..-.+ .+++++|++|+..+...+.+ .. .....+++||.+=
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~--~~~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNK--VYDARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCe--EEEEEecCCCEEE
Confidence 445677888876544333 57899999999998765431 11 1247889999764
No 102
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=29.51 E-value=43 Score=37.99 Aligned_cols=43 Identities=9% Similarity=0.171 Sum_probs=34.7
Q ss_pred CCCeechhhhhhhcCCCCCCCCCCcceEEEEcc-eEEEEEEeHHHHHHHHHHh
Q 002414 533 AGDYYGEELISWALDPNSSHYLPISSRTVRAAT-EVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 533 ~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t-~~~ll~L~~~~f~~ll~~~ 584 (926)
+||-||..++. |..+|.+|+...+ +|.++.+++.+|..++.+-
T Consensus 1 eGddfgklalv---------nd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALV---------NDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccc---------cccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 58999999884 3334778876655 6999999999999999876
No 103
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.41 E-value=7e+02 Score=31.17 Aligned_cols=55 Identities=13% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhccCCCccc-cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002414 337 FSHCFLWGLQNLSCFGQNLQT-SSYFWENFFAIVITISGLVFFLYLIGNIQIYLQS 391 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~-p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 391 (926)
=..+++|++-.++-++--++. -+...|.+..++.-+-.+++...+++-+.+++.+
T Consensus 554 S~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnn 609 (822)
T KOG3609|consen 554 SSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSN 609 (822)
T ss_pred HHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHh
Confidence 356899999877665544443 2345555555444444444444455544444443
No 104
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=29.30 E-value=98 Score=29.16 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=39.8
Q ss_pred hcceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 713 YLKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
......+.+|+.+-..--+ .+...+|++|++++.... ....+.+||++-
T Consensus 44 ~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g-----------~~~~l~~Gd~i~ 93 (131)
T COG1917 44 SVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG-----------EKKELKAGDVII 93 (131)
T ss_pred EEEEEEECCCcccccccCCCcceEEEEEecEEEEEecC-----------CceEecCCCEEE
Confidence 3457889999999888887 789999999999998652 245689999877
No 105
>PHA03029 hypothetical protein; Provisional
Probab=29.10 E-value=2.7e+02 Score=23.41 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=28.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 002414 360 YFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEE 398 (926)
Q Consensus 360 ~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~ 398 (926)
+..|.+|-++..++=.++.--+||.+-.++-+.++-...
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888877777777777788887777777654433
No 106
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=28.87 E-value=1.7e+02 Score=30.10 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=37.8
Q ss_pred cCChhHHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHhhcEEEE--eCCCCEEEccCCccC
Q 002414 445 NLPSDLKRNIKSELGLELLLNVPLF-QNLDAKTLDDICSYLKPVL--YAEESHIVLEGDRID 503 (926)
Q Consensus 445 ~Lp~~Lr~~i~~~l~~~~L~~i~lF-~~l~~~~l~~l~~~l~~~~--~~~ge~I~~eGd~~~ 503 (926)
.+|+. ...+...+...++.-.-.| ...++....+......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 44444 3333344444433322233 3456778888889999988 999999999999764
No 107
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.92 E-value=1.3e+02 Score=26.33 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=43.1
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVR 562 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~ 562 (926)
......+.||..+-...-.+.+..+|++|.+. ++. ..+.+|++.=+.. -+..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~----d~~-------~~~~~G~~~~~p~--------------g~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELS----DGD-------GRYGAGDWLRLPP--------------GSSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEE----ETT-------CEEETTEEEEE-T--------------TEEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEE----ECC-------ccCCCCeEEEeCC--------------CCccccC
Confidence 45567788998888767777888899999986 222 3457777753321 1456777
Q ss_pred EcceEEEEE
Q 002414 563 AATEVEAFV 571 (926)
Q Consensus 563 A~t~~~ll~ 571 (926)
+.+.|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888998875
No 108
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=25.26 E-value=1.4e+02 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=34.8
Q ss_pred EEEeCCCC--EEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechh
Q 002414 486 PVLYAEES--HIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEE 540 (926)
Q Consensus 486 ~~~~~~ge--~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~ 540 (926)
...++||. ...+-....+++++|++|+..+.. ++++ ..+++||+.|--
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~-d~~e------~~lrpGD~~gFp 95 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE-DGGE------TRLRPGDSAGFP 95 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEE-CCee------EEecCCceeecc
Confidence 44566664 345566777899999999998765 4443 688999998854
No 109
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.56 E-value=1.4e+02 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q 002414 402 KGQEIEQWMGFRKLS-----RDLQQKLRNYR 427 (926)
Q Consensus 402 ~~~~i~~~m~~~~lp-----~~L~~ri~~y~ 427 (926)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999998 67888888874
No 110
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=24.55 E-value=1.1e+02 Score=26.82 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=44.8
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCc
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNST 792 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~ 792 (926)
......+.+|..+=...-++....+|++|.+..- . ..+.+||++= .| +-+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~----------~-----~~~~~G~~~~--------~p------~g~~ 75 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG----------D-----GRYGAGDWLR--------LP------PGSS 75 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET----------T-----CEEETTEEEE--------E-------TTEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC----------C-----ccCCCCeEEE--------eC------CCCc
Confidence 4567888999999887788889999999998832 1 2358898854 11 2456
Q ss_pred cEEEEccceEEEE
Q 002414 793 RTVVARTEVEAFA 805 (926)
Q Consensus 793 ~tv~Al~~~e~~~ 805 (926)
.+..+-++|.++.
T Consensus 76 h~~~s~~gc~~~v 88 (91)
T PF12973_consen 76 HTPRSDEGCLILV 88 (91)
T ss_dssp EEEEESSCEEEEE
T ss_pred cccCcCCCEEEEE
Confidence 6777888888775
No 111
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=23.09 E-value=1.9e+02 Score=26.98 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=30.4
Q ss_pred EEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 487 VLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 487 ~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
-...||..=..-++ +++.-|++|.+.+...+ ++ ...+++||.|
T Consensus 50 We~TpG~~r~~y~~--~E~chil~G~v~~T~d~-Ge-----~v~~~aGD~~ 92 (116)
T COG3450 50 WECTPGKFRVTYDE--DEFCHILEGRVEVTPDG-GE-----PVEVRAGDSF 92 (116)
T ss_pred EEecCccceEEccc--ceEEEEEeeEEEEECCC-Ce-----EEEEcCCCEE
Confidence 34566666444444 78999999999876544 44 3788999986
No 112
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=22.74 E-value=3.6e+02 Score=20.71 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Q 002414 365 FFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEI 406 (926)
Q Consensus 365 ~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i 406 (926)
.++.+..+..++....+...+..+-..+....++++..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666667777666777777776665554
No 113
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=22.66 E-value=3.2e+02 Score=27.88 Aligned_cols=51 Identities=6% Similarity=-0.109 Sum_probs=32.6
Q ss_pred EEEEeCCCCEE---------EccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 485 KPVLYAEESHI---------VLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 485 ~~~~~~~ge~I---------~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
-...+.||.+. +++.....++|+|++|+..+...+.... .....+++|+.+
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~--~~~~~v~pGd~v 130 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE--ARWIEMEPGTVV 130 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc--EEEEEECCCCEE
Confidence 34556788753 3333334599999999998876543211 113678999875
No 114
>CHL00038 psbL photosystem II protein L
Probab=22.55 E-value=1e+02 Score=22.15 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=7.5
Q ss_pred HHHHHHHHHh
Q 002414 338 SHCFLWGLQN 347 (926)
Q Consensus 338 ~~s~ywa~~t 347 (926)
-+|+||++..
T Consensus 15 RTSLy~GLLl 24 (38)
T CHL00038 15 RTSLYWGLLL 24 (38)
T ss_pred hhhHHHHHHH
Confidence 3799999753
No 115
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=21.73 E-value=3.5e+02 Score=27.62 Aligned_cols=52 Identities=10% Similarity=0.016 Sum_probs=34.2
Q ss_pred ceEEeCCCCEE---------EccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWI---------FREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I---------~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
-...+.+|.+. +.+.....++|+|++|+..+...+. .++.....++|||.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~------~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDP------EGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecC------CCcEEEEEECCCCEEE
Confidence 34556666642 3343345699999999999886542 2234567789999754
No 116
>PRK06771 hypothetical protein; Provisional
Probab=21.30 E-value=4.2e+02 Score=23.62 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCC
Q 002414 378 FLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKL 415 (926)
Q Consensus 378 fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~l 415 (926)
|-|+...+..+.+.++.+....+.+++.+...+..-..
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34556666777778888888888888888777755444
No 117
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=20.22 E-value=1.5e+02 Score=21.41 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=6.2
Q ss_pred HHHHHHHH
Q 002414 339 HCFLWGLQ 346 (926)
Q Consensus 339 ~s~ywa~~ 346 (926)
+|+||++.
T Consensus 15 TSLY~GLl 22 (37)
T PF02419_consen 15 TSLYWGLL 22 (37)
T ss_dssp CHHHHHHH
T ss_pred HhHHHHHH
Confidence 68899874
Done!