Query 002414
Match_columns 926
No_of_seqs 754 out of 4741
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 01:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3shr_A CGMP-dependent protein 100.0 1.1E-31 3.9E-36 294.3 27.1 267 440-831 18-284 (299)
2 3beh_A MLL3241 protein; transm 100.0 1.2E-32 4.2E-37 309.6 17.5 336 73-597 3-341 (355)
3 2qcs_B CAMP-dependent protein 100.0 7.1E-30 2.4E-34 278.7 30.9 255 452-831 30-284 (291)
4 3tnp_B CAMP-dependent protein 100.0 4.9E-30 1.7E-34 293.9 26.8 263 451-830 135-398 (416)
5 3of1_A CAMP-dependent protein 100.0 1E-29 3.5E-34 269.8 25.4 236 459-824 5-240 (246)
6 4din_B CAMP-dependent protein 100.0 7.4E-30 2.5E-34 289.4 23.4 259 451-834 120-378 (381)
7 3bpz_A Potassium/sodium hyperp 100.0 1.8E-28 6E-33 253.0 22.7 179 390-584 2-180 (202)
8 2ptm_A Hyperpolarization-activ 100.0 3.9E-28 1.3E-32 249.5 23.0 186 391-597 2-187 (198)
9 3ukn_A Novel protein similar t 100.0 7.4E-29 2.5E-33 257.8 17.1 185 386-584 1-185 (212)
10 1o7f_A CAMP-dependent RAP1 gua 100.0 2.3E-27 7.8E-32 277.0 26.8 345 445-828 26-458 (469)
11 4f7z_A RAP guanine nucleotide 99.9 1.8E-25 6.3E-30 283.9 29.9 338 442-817 24-447 (999)
12 1orq_C Potassium channel; volt 99.9 9E-22 3.1E-26 205.9 17.3 212 78-391 8-220 (223)
13 2r9r_B Paddle chimera voltage 99.7 8.9E-18 3E-22 195.7 16.6 237 74-395 174-434 (514)
14 4f8a_A Potassium voltage-gated 99.7 4.6E-17 1.6E-21 160.1 17.5 139 439-596 5-143 (160)
15 3mdp_A Cyclic nucleotide-bindi 99.7 4.1E-17 1.4E-21 157.0 15.3 131 689-836 7-140 (142)
16 3gyd_A CNMP-BD protein, cyclic 99.7 1.2E-16 4.2E-21 162.1 19.3 141 681-838 32-172 (187)
17 2pqq_A Putative transcriptiona 99.7 5.5E-16 1.9E-20 150.2 16.1 128 687-831 4-131 (149)
18 4ev0_A Transcription regulator 99.7 1.5E-15 5.2E-20 157.2 20.4 143 695-851 3-145 (216)
19 2z69_A DNR protein; beta barre 99.7 6.3E-16 2.2E-20 150.8 16.3 133 685-833 9-141 (154)
20 3ukn_A Novel protein similar t 99.7 3E-16 1E-20 162.5 14.4 143 680-839 63-206 (212)
21 3dn7_A Cyclic nucleotide bindi 99.7 5.6E-16 1.9E-20 157.8 16.2 126 695-834 11-137 (194)
22 3idb_B CAMP-dependent protein 99.7 3.7E-16 1.3E-20 154.2 13.8 126 682-825 32-157 (161)
23 2ptm_A Hyperpolarization-activ 99.7 4.7E-16 1.6E-20 159.1 14.9 134 680-831 58-193 (198)
24 3e97_A Transcriptional regulat 99.6 1.4E-15 4.6E-20 159.5 16.2 131 687-834 5-135 (231)
25 3dv8_A Transcriptional regulat 99.6 4.2E-15 1.4E-19 154.3 19.4 131 689-836 4-136 (220)
26 3ocp_A PRKG1 protein; serine/t 99.6 6.6E-16 2.3E-20 148.3 12.3 125 445-584 7-131 (139)
27 1wgp_A Probable cyclic nucleot 99.6 1.4E-16 4.6E-21 152.6 7.3 126 689-823 7-134 (137)
28 3fx3_A Cyclic nucleotide-bindi 99.6 1.7E-15 5.8E-20 159.4 16.3 133 685-834 8-140 (237)
29 3d0s_A Transcriptional regulat 99.6 1.3E-15 4.6E-20 159.1 15.2 133 687-836 5-137 (227)
30 3bpz_A Potassium/sodium hyperp 99.6 1.4E-15 4.7E-20 156.3 14.6 133 680-831 59-193 (202)
31 3gyd_A CNMP-BD protein, cyclic 99.6 5E-15 1.7E-19 150.1 18.4 135 439-584 13-152 (187)
32 3ocp_A PRKG1 protein; serine/t 99.6 1.5E-15 5.2E-20 145.8 13.8 127 677-825 12-138 (139)
33 4f8a_A Potassium voltage-gated 99.6 2.9E-15 1E-19 147.2 16.0 133 680-829 14-148 (160)
34 3iwz_A CAP-like, catabolite ac 99.6 6.3E-15 2.2E-19 154.1 18.8 132 687-834 10-146 (230)
35 3dn7_A Cyclic nucleotide bindi 99.6 3.4E-15 1.2E-19 152.0 16.1 156 460-643 6-163 (194)
36 3dkw_A DNR protein; CRP-FNR, H 99.6 1.1E-15 3.8E-20 159.5 12.4 135 685-836 6-141 (227)
37 2gau_A Transcriptional regulat 99.6 5.1E-15 1.7E-19 155.2 16.7 134 695-842 14-147 (232)
38 3idb_B CAMP-dependent protein 99.6 5.5E-15 1.9E-19 145.8 15.8 123 451-584 28-150 (161)
39 1zyb_A Transcription regulator 99.6 2.7E-15 9.3E-20 157.5 14.0 133 685-833 15-149 (232)
40 3mdp_A Cyclic nucleotide-bindi 99.6 6E-15 2.1E-19 141.7 14.9 115 460-584 5-122 (142)
41 2pqq_A Putative transcriptiona 99.6 1.1E-14 3.9E-19 140.9 16.5 114 460-584 4-118 (149)
42 1vp6_A CNBD, cyclic-nucleotide 99.6 6.5E-15 2.2E-19 140.9 14.6 124 686-833 9-132 (138)
43 1wgp_A Probable cyclic nucleot 99.6 1.6E-15 5.3E-20 145.2 9.6 124 461-584 6-129 (137)
44 3pna_A CAMP-dependent protein 99.6 7.5E-15 2.6E-19 143.7 14.1 123 680-824 30-152 (154)
45 3ryp_A Catabolite gene activat 99.6 2.2E-14 7.6E-19 147.7 17.5 125 697-834 2-126 (210)
46 4ev0_A Transcription regulator 99.6 4.9E-14 1.7E-18 145.8 20.2 111 463-584 1-112 (216)
47 2oz6_A Virulence factor regula 99.6 4.8E-14 1.7E-18 144.8 18.1 125 702-836 1-125 (207)
48 2fmy_A COOA, carbon monoxide o 99.6 1.7E-14 5.7E-19 150.0 13.3 140 688-852 4-143 (220)
49 2z69_A DNR protein; beta barre 99.6 4E-14 1.4E-18 137.9 14.8 121 460-596 11-132 (154)
50 1o5l_A Transcriptional regulat 99.5 2.1E-14 7.3E-19 148.5 13.4 126 695-833 3-128 (213)
51 3dv8_A Transcriptional regulat 99.5 1.6E-13 5.6E-18 142.2 20.0 113 461-584 3-118 (220)
52 4ava_A Lysine acetyltransferas 99.5 3.4E-14 1.2E-18 157.6 15.6 129 687-834 12-140 (333)
53 3pna_A CAMP-dependent protein 99.5 3.9E-14 1.3E-18 138.5 13.9 113 457-584 34-146 (154)
54 3d0s_A Transcriptional regulat 99.5 5.5E-14 1.9E-18 146.7 15.9 114 460-584 5-119 (227)
55 3fx3_A Cyclic nucleotide-bindi 99.5 7.9E-14 2.7E-18 146.6 16.5 115 459-584 9-124 (237)
56 1vp6_A CNBD, cyclic-nucleotide 99.5 6E-14 2E-18 134.1 13.9 115 460-597 10-124 (138)
57 3e97_A Transcriptional regulat 99.5 1.8E-13 6.3E-18 143.1 18.4 114 460-584 5-119 (231)
58 2a9h_A Voltage-gated potassium 99.5 3.2E-14 1.1E-18 138.2 11.4 65 334-398 82-146 (155)
59 2d93_A RAP guanine nucleotide 99.5 7.5E-15 2.6E-19 140.0 6.3 123 447-584 2-126 (134)
60 1ft9_A Carbon monoxide oxidati 99.5 3.4E-14 1.2E-18 147.9 11.9 121 695-837 4-124 (222)
61 3kcc_A Catabolite gene activat 99.5 1.6E-13 5.6E-18 146.6 17.2 122 700-834 55-176 (260)
62 3shr_A CGMP-dependent protein 99.5 1.6E-13 5.4E-18 149.8 17.1 130 676-827 27-156 (299)
63 2d93_A RAP guanine nucleotide 99.5 2.4E-14 8.3E-19 136.5 8.5 118 680-819 8-127 (134)
64 2gau_A Transcriptional regulat 99.5 3E-13 1E-17 141.7 17.2 117 464-597 13-130 (232)
65 1zyb_A Transcription regulator 99.5 1.5E-13 5E-18 144.2 14.6 122 460-597 17-141 (232)
66 2qcs_B CAMP-dependent protein 99.5 3.3E-13 1.1E-17 146.4 17.6 131 679-831 30-160 (291)
67 3dkw_A DNR protein; CRP-FNR, H 99.5 1.6E-13 5.5E-18 143.1 14.5 115 460-584 8-123 (227)
68 3iwz_A CAP-like, catabolite ac 99.5 7.9E-13 2.7E-17 138.1 19.5 115 460-584 10-125 (230)
69 3tnp_B CAMP-dependent protein 99.5 3.4E-13 1.2E-17 154.1 17.2 129 679-825 136-264 (416)
70 3of1_A CAMP-dependent protein 99.5 1.3E-13 4.3E-18 145.6 12.1 125 685-831 4-128 (246)
71 2fmy_A COOA, carbon monoxide o 99.5 5.6E-13 1.9E-17 138.4 15.1 106 461-584 4-109 (220)
72 4din_B CAMP-dependent protein 99.5 3.2E-13 1.1E-17 152.6 14.2 134 676-831 118-251 (381)
73 3e6c_C CPRK, cyclic nucleotide 99.4 3.6E-13 1.2E-17 142.9 13.3 124 695-835 13-136 (250)
74 4ava_A Lysine acetyltransferas 99.4 5.3E-13 1.8E-17 147.9 15.0 113 460-584 12-124 (333)
75 3ryp_A Catabolite gene activat 99.4 2.3E-12 8E-17 132.4 18.1 108 467-584 2-110 (210)
76 3vou_A ION transport 2 domain 99.4 1.5E-12 5E-17 126.3 15.3 86 337-422 53-148 (148)
77 2oz6_A Virulence factor regula 99.4 4.5E-12 1.5E-16 130.0 19.1 106 472-584 1-107 (207)
78 4h33_A LMO2059 protein; bilaye 99.4 2.1E-13 7E-18 130.1 8.2 92 337-428 44-135 (137)
79 2bgc_A PRFA; bacterial infecti 99.4 3.4E-12 1.2E-16 134.3 17.3 123 700-836 2-128 (238)
80 1ft9_A Carbon monoxide oxidati 99.4 1.3E-12 4.3E-17 136.0 13.7 105 462-584 1-105 (222)
81 3la7_A Global nitrogen regulat 99.4 2.9E-12 9.8E-17 135.4 16.5 117 704-833 30-150 (243)
82 2ih3_C Voltage-gated potassium 99.4 1.2E-12 4.2E-17 122.2 11.4 60 335-394 60-119 (122)
83 1o7f_A CAMP-dependent RAP1 gua 99.4 2.2E-12 7.4E-17 150.1 15.7 137 675-827 29-165 (469)
84 1o5l_A Transcriptional regulat 99.4 2.6E-12 9E-17 132.7 14.2 109 466-584 4-113 (213)
85 3kcc_A Catabolite gene activat 99.4 8.3E-12 2.8E-16 133.3 17.8 106 469-584 54-160 (260)
86 4f7z_A RAP guanine nucleotide 99.3 8.4E-12 2.9E-16 158.4 17.6 126 682-823 36-161 (999)
87 3e6c_C CPRK, cyclic nucleotide 99.3 1.6E-11 5.4E-16 130.2 14.2 109 462-584 10-119 (250)
88 3eff_K Voltage-gated potassium 99.2 2.5E-11 8.5E-16 116.4 11.2 59 335-393 39-97 (139)
89 3b02_A Transcriptional regulat 99.2 3.4E-11 1.2E-15 122.4 12.6 96 717-833 2-97 (195)
90 2bgc_A PRFA; bacterial infecti 99.2 2.3E-10 7.9E-15 120.2 17.5 105 470-584 2-110 (238)
91 3la7_A Global nitrogen regulat 99.2 2.1E-10 7.1E-15 121.0 16.9 102 474-584 30-135 (243)
92 3beh_A MLL3241 protein; transm 99.2 1.8E-12 6.3E-17 145.0 -0.2 121 688-832 228-348 (355)
93 3cf6_E RAP guanine nucleotide 99.2 6.2E-11 2.1E-15 143.1 12.7 116 685-821 29-146 (694)
94 3cf6_E RAP guanine nucleotide 99.2 9.6E-11 3.3E-15 141.5 13.0 130 440-584 12-143 (694)
95 2zcw_A TTHA1359, transcription 99.1 1.3E-10 4.4E-15 118.8 11.5 100 710-831 1-102 (202)
96 3rvy_A ION transport protein; 99.1 2.2E-10 7.7E-15 123.9 10.9 61 334-394 178-244 (285)
97 2q67_A Potassium channel prote 99.1 8.8E-10 3E-14 101.3 12.3 60 337-396 50-109 (114)
98 2k1e_A Water soluble analogue 99.0 5.8E-11 2E-15 107.4 2.8 59 336-394 40-98 (103)
99 3ouf_A Potassium channel prote 99.0 1.8E-09 6.3E-14 96.2 11.5 56 337-392 33-88 (97)
100 3b02_A Transcriptional regulat 99.0 2.7E-09 9.4E-14 108.2 13.1 80 487-578 2-82 (195)
101 3ldc_A Calcium-gated potassium 98.9 2.3E-09 7.7E-14 92.4 7.7 53 337-389 29-81 (82)
102 3pjs_K KCSA, voltage-gated pot 98.8 2.1E-10 7.1E-15 113.3 -1.7 64 335-398 66-129 (166)
103 2zcw_A TTHA1359, transcription 98.8 1.5E-08 5.1E-13 103.3 10.8 86 480-578 1-89 (202)
104 1xl4_A Inward rectifier potass 98.7 2E-08 6.9E-13 108.2 9.3 56 335-390 81-136 (301)
105 1p7b_A Integral membrane chann 98.7 1.4E-08 4.9E-13 110.5 5.6 57 336-392 96-152 (333)
106 3um7_A Potassium channel subfa 98.6 8.5E-08 2.9E-12 102.8 10.1 57 336-392 115-171 (309)
107 2qks_A KIR3.1-prokaryotic KIR 98.5 1.5E-07 5.3E-12 102.1 7.4 57 336-392 78-134 (321)
108 3sya_A G protein-activated inw 98.4 9.1E-07 3.1E-11 96.0 11.5 59 336-394 91-151 (340)
109 4gx0_A TRKA domain protein; me 98.3 1.8E-06 6E-11 102.5 11.6 54 337-390 52-106 (565)
110 3spc_A Inward-rectifier K+ cha 98.3 2E-06 6.9E-11 93.4 10.8 59 335-393 93-153 (343)
111 3ukm_A Potassium channel subfa 98.3 1.1E-06 3.8E-11 92.8 8.1 56 336-391 93-148 (280)
112 3um7_A Potassium channel subfa 98.2 4.4E-07 1.5E-11 97.3 4.3 60 337-396 225-290 (309)
113 4dxw_A Navrh, ION transport pr 98.2 1.3E-05 4.5E-10 83.3 13.2 74 80-182 14-88 (229)
114 3ukm_A Potassium channel subfa 98.1 1.6E-06 5.5E-11 91.5 5.4 56 337-392 202-264 (280)
115 1lnq_A MTHK channels, potassiu 98.0 5.8E-07 2E-11 99.4 -2.0 56 337-392 46-101 (336)
116 2kyh_A KVAP, voltage-gated pot 97.5 0.00023 8E-09 68.0 8.0 78 80-186 23-100 (147)
117 1ors_C Potassium channel; volt 97.4 0.00029 1E-08 66.2 7.2 80 78-186 6-85 (132)
118 2l53_B CAM, voltage-gated sodi 92.8 0.094 3.2E-06 35.1 3.3 21 837-857 4-24 (31)
119 2kxw_B Sodium channel protein 92.0 0.12 4.1E-06 33.5 2.9 18 838-855 5-22 (27)
120 2qnk_A 3-hydroxyanthranilate 3 87.0 28 0.00097 36.0 17.5 69 714-808 209-277 (286)
121 3fjs_A Uncharacterized protein 63.7 28 0.00095 30.7 8.7 68 713-805 37-104 (114)
122 3rns_A Cupin 2 conserved barre 62.8 21 0.00071 36.0 8.6 69 713-806 38-106 (227)
123 3fjs_A Uncharacterized protein 60.9 31 0.0011 30.4 8.4 67 484-571 38-104 (114)
124 3lwc_A Uncharacterized protein 60.8 17 0.00059 32.5 6.7 46 485-538 43-88 (119)
125 2ozj_A Cupin 2, conserved barr 56.5 32 0.0011 29.9 7.8 67 715-806 41-107 (114)
126 3rns_A Cupin 2 conserved barre 56.1 37 0.0013 34.1 9.1 70 483-573 38-107 (227)
127 4dck_A Sodium channel protein 54.5 10 0.00035 36.3 4.1 27 838-864 129-155 (168)
128 2ozj_A Cupin 2, conserved barr 53.4 40 0.0014 29.3 7.9 45 486-537 42-86 (114)
129 3kg2_A Glutamate receptor 2; I 53.0 13 0.00043 45.4 5.8 55 336-391 563-617 (823)
130 3lwc_A Uncharacterized protein 52.8 25 0.00087 31.4 6.4 46 715-772 43-88 (119)
131 1o5u_A Novel thermotoga mariti 52.3 34 0.0012 29.6 6.9 47 484-538 33-79 (101)
132 1yhf_A Hypothetical protein SP 51.8 56 0.0019 28.2 8.6 68 714-806 42-109 (115)
133 2pfw_A Cupin 2, conserved barr 51.7 74 0.0025 27.5 9.4 68 484-572 36-103 (116)
134 3es4_A Uncharacterized protein 49.7 16 0.00053 32.8 4.3 46 486-538 46-91 (116)
135 1yhf_A Hypothetical protein SP 48.4 67 0.0023 27.7 8.5 68 484-572 42-109 (115)
136 3h8u_A Uncharacterized conserv 48.2 22 0.00076 31.6 5.3 48 484-537 41-89 (125)
137 3bcw_A Uncharacterized protein 48.0 15 0.0005 33.3 4.0 46 486-538 53-98 (123)
138 2pfw_A Cupin 2, conserved barr 46.2 70 0.0024 27.6 8.3 68 714-806 36-103 (116)
139 1yfu_A 3-hydroxyanthranilate-3 44.8 31 0.0011 33.1 5.8 36 500-538 53-88 (174)
140 3d0j_A Uncharacterized protein 43.2 54 0.0019 30.2 6.9 64 729-809 47-110 (140)
141 1dgw_A Canavalin; duplicated s 43.1 36 0.0012 32.8 6.2 52 484-538 43-94 (178)
142 1yfu_A 3-hydroxyanthranilate-3 42.7 35 0.0012 32.7 5.7 35 731-772 54-88 (174)
143 1zvf_A 3-hydroxyanthranilate 3 42.4 86 0.0029 30.0 8.3 88 705-809 12-114 (176)
144 3d0j_A Uncharacterized protein 42.1 51 0.0017 30.4 6.5 65 496-575 44-110 (140)
145 2fqp_A Hypothetical protein BP 41.9 16 0.00055 31.1 3.1 49 485-538 21-70 (97)
146 3es1_A Cupin 2, conserved barr 41.3 25 0.00086 33.8 4.7 49 483-537 80-128 (172)
147 2gu9_A Tetracenomycin polyketi 40.8 42 0.0014 28.7 5.9 48 714-772 23-73 (113)
148 4e2g_A Cupin 2 conserved barre 40.1 40 0.0014 29.8 5.7 49 713-772 42-90 (126)
149 1zvf_A 3-hydroxyanthranilate 3 39.5 34 0.0011 32.8 5.0 64 499-576 51-115 (176)
150 1o5u_A Novel thermotoga mariti 38.9 39 0.0013 29.2 5.1 46 715-772 34-79 (101)
151 1v70_A Probable antibiotics sy 38.8 50 0.0017 27.6 5.9 48 714-772 30-78 (105)
152 4b29_A Dimethylsulfoniopropion 37.9 45 0.0015 33.3 5.9 46 487-538 137-182 (217)
153 4e2g_A Cupin 2 conserved barre 37.8 64 0.0022 28.4 6.7 47 484-537 43-89 (126)
154 2gu9_A Tetracenomycin polyketi 37.4 50 0.0017 28.2 5.8 47 484-537 23-72 (113)
155 2bnm_A Epoxidase; oxidoreducta 36.1 42 0.0014 32.5 5.6 50 486-538 121-173 (198)
156 1v70_A Probable antibiotics sy 35.8 57 0.002 27.2 5.8 47 484-537 30-77 (105)
157 2q30_A Uncharacterized protein 35.1 1.3E+02 0.0045 25.3 8.2 47 485-537 36-84 (110)
158 1n2d_C IQ2 and IQ3 motifs from 34.6 41 0.0014 24.5 3.9 19 838-856 27-45 (48)
159 1dgw_A Canavalin; duplicated s 33.7 52 0.0018 31.6 5.7 53 713-772 42-94 (178)
160 2pyt_A Ethanolamine utilizatio 33.4 39 0.0013 30.9 4.4 44 486-538 61-104 (133)
161 2i45_A Hypothetical protein; n 32.9 41 0.0014 28.9 4.3 69 489-577 35-103 (107)
162 2ix7_C Myosin-5A; contractIle 32.5 1.1E+02 0.0036 23.2 6.2 19 840-858 29-47 (58)
163 3ibm_A Cupin 2, conserved barr 32.0 61 0.0021 30.7 5.8 48 714-772 58-105 (167)
164 4e2q_A Ureidoglycine aminohydr 30.2 88 0.003 32.3 6.9 52 710-772 184-236 (266)
165 3es4_A Uncharacterized protein 30.1 37 0.0013 30.4 3.5 46 716-772 46-91 (116)
166 3h8u_A Uncharacterized conserv 29.8 50 0.0017 29.1 4.5 50 713-772 40-90 (125)
167 3ibm_A Cupin 2, conserved barr 29.6 69 0.0024 30.4 5.7 47 484-537 58-104 (167)
168 3bcw_A Uncharacterized protein 29.3 31 0.001 31.2 2.9 45 717-772 54-98 (123)
169 3bu7_A Gentisate 1,2-dioxygena 29.1 43 0.0015 36.8 4.5 48 485-538 126-173 (394)
170 4axo_A EUTQ, ethanolamine util 27.9 52 0.0018 30.9 4.3 30 501-537 83-112 (151)
171 3i7d_A Sugar phosphate isomera 26.3 60 0.002 30.6 4.5 48 484-538 45-94 (163)
172 3kgz_A Cupin 2 conserved barre 26.3 56 0.0019 30.7 4.3 46 716-772 48-93 (156)
173 2bnm_A Epoxidase; oxidoreducta 25.8 70 0.0024 30.9 5.1 50 716-772 121-173 (198)
174 1y9q_A Transcriptional regulat 25.7 1E+02 0.0035 29.6 6.3 46 716-772 108-155 (192)
175 3jzv_A Uncharacterized protein 25.5 58 0.002 31.0 4.3 46 716-772 57-102 (166)
176 2q1z_B Anti-sigma factor CHRR, 25.5 1.1E+02 0.0036 30.0 6.3 66 483-573 126-193 (195)
177 3l2h_A Putative sugar phosphat 25.4 60 0.0021 30.3 4.4 47 484-537 48-96 (162)
178 1o4t_A Putative oxalate decarb 25.3 75 0.0026 28.6 4.9 47 715-772 60-107 (133)
179 3lag_A Uncharacterized protein 25.3 21 0.00072 30.7 1.0 50 484-537 19-69 (98)
180 2pyt_A Ethanolamine utilizatio 25.0 60 0.002 29.6 4.1 44 716-772 61-104 (133)
181 3dvk_B Voltage-dependent R-typ 24.9 37 0.0013 21.0 1.6 16 840-855 7-22 (23)
182 2vpv_A Protein MIF2, MIF2P; nu 24.7 51 0.0018 31.4 3.6 31 731-772 109-139 (166)
183 2f4p_A Hypothetical protein TM 24.7 1.1E+02 0.0038 28.1 6.0 49 484-538 50-98 (147)
184 1lr5_A Auxin binding protein 1 24.6 81 0.0028 29.4 5.2 54 484-537 43-98 (163)
185 2b8m_A Hypothetical protein MJ 24.5 76 0.0026 27.5 4.7 45 486-537 31-76 (117)
186 1y9q_A Transcriptional regulat 24.1 1.5E+02 0.0051 28.4 7.1 45 486-537 108-154 (192)
187 3jzv_A Uncharacterized protein 23.8 64 0.0022 30.7 4.2 46 485-537 56-101 (166)
188 4i4a_A Similar to unknown prot 23.8 87 0.003 27.6 5.0 78 715-817 37-118 (128)
189 1fi2_A Oxalate oxidase, germin 23.8 1.4E+02 0.0047 29.1 6.8 56 714-772 74-130 (201)
190 2opk_A Hypothetical protein; p 23.5 75 0.0026 27.7 4.4 34 500-538 51-84 (112)
191 3kgz_A Cupin 2 conserved barre 23.4 68 0.0023 30.1 4.3 45 486-537 48-92 (156)
192 2o1q_A Putative acetyl/propion 23.3 1E+02 0.0035 28.4 5.4 52 483-539 45-96 (145)
193 2fqp_A Hypothetical protein BP 23.2 46 0.0016 28.1 2.8 49 715-772 21-70 (97)
194 3c3v_A Arachin ARAH3 isoform; 22.9 1.2E+02 0.0043 34.3 7.0 60 708-772 368-428 (510)
195 2d5f_A Glycinin A3B4 subunit; 22.9 1.4E+02 0.0048 33.8 7.4 61 707-772 362-423 (493)
196 3d82_A Cupin 2, conserved barr 22.8 1.2E+02 0.0042 25.1 5.6 51 732-807 50-100 (102)
197 3es1_A Cupin 2, conserved barr 22.7 68 0.0023 30.8 4.1 49 713-771 80-128 (172)
198 4axo_A EUTQ, ethanolamine util 22.6 70 0.0024 30.0 4.1 31 731-772 83-113 (151)
199 3fz3_A Prunin; TREE NUT allerg 22.6 1.5E+02 0.0051 33.7 7.4 61 707-772 389-450 (531)
200 3i7d_A Sugar phosphate isomera 22.2 80 0.0028 29.7 4.6 47 715-772 46-94 (163)
201 1o4t_A Putative oxalate decarb 22.2 1E+02 0.0035 27.7 5.1 46 485-537 60-106 (133)
202 1vj2_A Novel manganese-contain 22.2 69 0.0023 28.5 3.9 47 715-772 51-97 (126)
203 2cav_A Protein (canavalin); vi 22.0 1.1E+02 0.0036 34.3 6.1 54 482-538 86-139 (445)
204 1uij_A Beta subunit of beta co 21.9 91 0.0031 34.5 5.6 53 482-537 49-101 (416)
205 1fi2_A Oxalate oxidase, germin 21.8 1.7E+02 0.0057 28.5 7.0 52 484-538 74-130 (201)
206 3h7j_A Bacilysin biosynthesis 21.8 1.1E+02 0.0038 30.7 5.9 48 483-537 35-82 (243)
207 4i4a_A Similar to unknown prot 21.8 1E+02 0.0035 27.1 5.0 46 485-537 37-82 (128)
208 1fxz_A Glycinin G1; proglycini 21.8 1.4E+02 0.0046 33.7 7.0 56 712-772 338-394 (476)
209 1sfn_A Conserved hypothetical 21.8 98 0.0034 31.3 5.5 50 712-772 165-215 (246)
210 2b8m_A Hypothetical protein MJ 21.3 61 0.0021 28.2 3.3 47 716-772 31-77 (117)
211 2ea7_A 7S globulin-1; beta bar 21.1 1E+02 0.0035 34.3 5.7 54 482-538 61-114 (434)
212 1vj2_A Novel manganese-contain 21.0 87 0.003 27.8 4.3 46 485-537 51-96 (126)
213 2f4p_A Hypothetical protein TM 20.9 98 0.0034 28.4 4.8 49 714-772 50-98 (147)
214 1sfn_A Conserved hypothetical 20.9 1E+02 0.0035 31.2 5.4 50 482-538 165-215 (246)
215 2q1z_B Anti-sigma factor CHRR, 20.6 1E+02 0.0034 30.1 5.0 66 712-806 125-192 (195)
216 3myx_A Uncharacterized protein 20.4 85 0.0029 31.8 4.4 45 487-538 172-216 (238)
217 3d82_A Cupin 2, conserved barr 20.2 1.8E+02 0.0061 24.0 6.1 54 500-574 48-101 (102)
No 1
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=100.00 E-value=1.1e-31 Score=294.26 Aligned_cols=267 Identities=22% Similarity=0.328 Sum_probs=231.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee
Q 002414 440 ENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV 519 (926)
Q Consensus 440 ~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~ 519 (926)
.....++|+..|.+...++..++++++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|||++|.|++.. +
T Consensus 18 ~~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-~ 96 (299)
T 3shr_A 18 RGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E 96 (299)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE-T
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE-C
Confidence 345668999999999999999999999999999999999999999999999999999999999999999999999854 3
Q ss_pred CCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHh
Q 002414 520 GGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRV 599 (926)
Q Consensus 520 ~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~ 599 (926)
| . .+..+.+|++|||.+++. .. +|++||+|.++|+++.|++++|..++..+ |..+.
T Consensus 97 g-~----~~~~~~~G~~fGe~~ll~---~~------~~~~tv~a~~~~~l~~i~~~~~~~i~~~~------~~~~~---- 152 (299)
T 3shr_A 97 G-V----KLCTMGPGKVFGELAILY---NC------TRTATVKTLVNVKLWAIDRQCFQTIMMRT------GLIKH---- 152 (299)
T ss_dssp T-E----EEEEECTTCEESCSGGGT---TT------BCCSEEEESSCEEEEEECHHHHHHHHHHH------HHHHH----
T ss_pred C-E----EEEEeCCCCeeeHhHHhc---CC------CCCcEEEEcCCeEEEEEcHHHHHHHhhHh------HHHHH----
Confidence 3 2 368999999999998852 22 38999999999999999999999999988 32111
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCC
Q 002414 600 YSHQWRTWAACSIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAE 679 (926)
Q Consensus 600 ~s~~~~~~~~~~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~ 679 (926)
T Consensus 153 -------------------------------------------------------------------------------- 152 (299)
T 3shr_A 153 -------------------------------------------------------------------------------- 152 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCe
Q 002414 680 PDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGF 759 (926)
Q Consensus 680 pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~ 759 (926)
..+..++. ++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|++|.|+++..+. .+|++
T Consensus 153 ----~~~~~~l~---~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~----~~g~~ 221 (299)
T 3shr_A 153 ----TEYMEFLK---SVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDS----PNEDP 221 (299)
T ss_dssp ----HHHHHHHT---TSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCS----SSCCC
T ss_pred ----HHHHHHHh---hCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecC----CCCcc
Confidence 02334566 89999999999999999999999999999999999999999999999999998752 14788
Q ss_pred EEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 760 FNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 760 ~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
..+..+++||+|||..+. .. .|+++||+|.++|+++.|++++|..++.++|.+..++++...+
T Consensus 222 ~~~~~l~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~ 284 (299)
T 3shr_A 222 VFLRTLGKGDWFGEKALQ---GE------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEA 284 (299)
T ss_dssp EEEEEEETTCEECGGGGS---SS------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred eEEEEcCCCCEeChHHHh---CC------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhh
Confidence 999999999999999765 22 2789999999999999999999999999999888777766544
No 2
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=1.2e-32 Score=309.56 Aligned_cols=336 Identities=20% Similarity=0.215 Sum_probs=130.5
Q ss_pred eCCCCcchHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCC
Q 002414 73 LSPHGPLWNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYP 152 (926)
Q Consensus 73 i~P~s~~Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~ 152 (926)
+.|+|+..+.+++++++.+++++-+..+ +.. .......+..++.++-++|.+|+++++..+ .+
T Consensus 3 ~~p~s~~f~~~~~~~i~ls~~~~~~~t~-~~~---------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~-~~------ 65 (355)
T 3beh_A 3 VLPFLRIYAPLNAVLAAPGLLAVAALTI-PDM---------SGRSRLALAALLAVIWGAYLLQLAATLLKR-RA------ 65 (355)
T ss_dssp ----CCSSSSHHHHHHHHHHHHHHHHTS-SSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CS------
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHcc-cch---------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc-cc------
Confidence 5788888666777777777766555421 110 111112334445555556889999988432 11
Q ss_pred CCeEeccHHHHHHHHhhh-hhhhHHHhh-ccHhHHHhhhhhcccCCcchhhchhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 002414 153 QRSLNEYAQEITRKYLLF-FLPIDLLAI-LPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYPLFTNVTR 230 (926)
Q Consensus 153 ~g~lV~d~~~Ia~~Yl~~-~F~iDlls~-lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l~~yl~rllri~~l~~~~~~ 230 (926)
...|.++ |.++|++++ +|+..++. .+... .|++|++| +.|++|..+..+.+.+
T Consensus 66 -----------~~~~~~~~~~i~Dl~~i~~p~~~~~~-------~~~~~---~r~lr~~R----~lrl~r~~~~~~~l~~ 120 (355)
T 3beh_A 66 -----------GVVRDRTPKIAIDVLAVLVPLAAFLL-------DGSPD---WSLYCAVW----LLKPLRDSTFFPVLGR 120 (355)
T ss_dssp -----------CSSCCCHHHHHHHHHHHHHHHHHHHS-------CCSGG---GGGGGGGG----GSHHHHTCSSHHHHHH
T ss_pred -----------cceeccCcchHHHHHHHHHHHHHHHh-------ccchh---HHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 1124444 899999999 69865432 11122 23333222 3444444333333322
Q ss_pred cccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCccccccCCCCCC
Q 002414 231 TSCKLDESKFFKAAFNLL-LYMVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKDFCPTKPQ 309 (926)
Q Consensus 231 ~~~~~~~~~~~~~i~~ll-~~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~~~~~~~~ 309 (926)
.. . .....+..++ +++++.|+.||++|.+.- |.
T Consensus 121 ~l---~--~~~~~l~~~~~~~~~~~~~~a~~~~~~e~--------------------------------~~--------- 154 (355)
T 3beh_A 121 VL---A--NEARNLIGVTTLFGVVLFAVALAAYVIER--------------------------------DI--------- 154 (355)
T ss_dssp HH---H--HTHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------------------------TT---------
T ss_pred HH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------------------------CC---------
Confidence 21 0 0111233333 345668999999998751 00
Q ss_pred CCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 310 NTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYL 389 (926)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 389 (926)
+++.+..|..|+||+++|||||||||++|.|..++++++++|++|++++++.+|.+++.+
T Consensus 155 --------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 214 (355)
T 3beh_A 155 --------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214 (355)
T ss_dssp --------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111234588999999999999999999999999999999999999999999999998877
Q ss_pred HhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhcCCccc
Q 002414 390 QSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLF 469 (926)
Q Consensus 390 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF 469 (926)
.....+ +++.+ ..+.++++|+|
T Consensus 215 ~~~~~~----------------------------~~~~~------------------------------~~~~l~~~~lf 236 (355)
T 3beh_A 215 YQEVRR----------------------------GDFVR------------------------------NWQLVAAVPLF 236 (355)
T ss_dssp HHHHHH----------------------------HHHHH------------------------------HHC--------
T ss_pred HHHHHH----------------------------Hhhcc------------------------------cchhhhccccc
Confidence 532110 00000 24678899999
Q ss_pred ccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCC
Q 002414 470 QNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPN 549 (926)
Q Consensus 470 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~ 549 (926)
++++++.++.++..++.+.++|||+|+++||+++++|+|.+|.|+++..+ . ..+++|++|||.+++ .+.
T Consensus 237 ~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~------~~l~~G~~fGe~~~l---~~~ 305 (355)
T 3beh_A 237 QKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMALI---SGE 305 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--e------eEECCCCEEeehHHh---CCC
Confidence 99999999999999999999999999999999999999999999998764 1 578999999999874 222
Q ss_pred CCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHH
Q 002414 550 SSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAF 597 (926)
Q Consensus 550 ~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f 597 (926)
+++++++|.++|+++.+++++|.++++++ |.+.+.+
T Consensus 306 ------~~~~~~~A~~~~~l~~i~~~~f~~ll~~~------p~~~~~l 341 (355)
T 3beh_A 306 ------PRSATVSAATTVSLLSLHSADFQMLCSSS------PEIAEIF 341 (355)
T ss_dssp ------------------------------------------------
T ss_pred ------CcceEEEECccEEEEEEeHHHHHHHHHHC------HHHHHHH
Confidence 37899999999999999999999999999 6655533
No 3
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.97 E-value=7.1e-30 Score=278.67 Aligned_cols=255 Identities=20% Similarity=0.264 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEe
Q 002414 452 RNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYL 531 (926)
Q Consensus 452 ~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l 531 (926)
..-..+.+.+.|+++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|+|++|.|+++. +| . .+..+
T Consensus 30 s~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~g-~----~~~~l 103 (291)
T 2qcs_B 30 DYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-NN-E----WATSV 103 (291)
T ss_dssp CHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-TT-E----EEEEE
T ss_pred CHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-CC-e----EEEEc
Confidence 344455667899999999999999999999999999999999999999999999999999999987 33 2 36899
Q ss_pred CCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHH
Q 002414 532 SAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACS 611 (926)
Q Consensus 532 ~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~ 611 (926)
++|++|||.+++ ... +++++++|.++|+++.|++++|.+++.++ |.+...
T Consensus 104 ~~G~~fGe~~l~---~~~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~------~~~~~~--------------- 153 (291)
T 2qcs_B 104 GEGGSFGELALI---YGT------PRAATVKAKTNVKLWGIDRDSYRRILMGS------TLRKRK--------------- 153 (291)
T ss_dssp CTTCEECGGGGT---CCC------BCSSEEEESSCEEEEEEEHHHHHHHHHHH------HHHHHH---------------
T ss_pred CCCCccchHHHh---cCC------CCceEEEECCCEEEEEEEhHHHHHHHhhh------HHHHHH---------------
Confidence 999999999884 222 38999999999999999999999999888 432221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhh
Q 002414 612 IQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLM 691 (926)
Q Consensus 612 ~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~ 691 (926)
.+..++.
T Consensus 154 -------------------------------------------------------------------------~~~~~l~ 160 (291)
T 2qcs_B 154 -------------------------------------------------------------------------MYEEFLS 160 (291)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHh
Confidence 1123455
Q ss_pred hccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCee
Q 002414 692 TDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLC 771 (926)
Q Consensus 692 ~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~f 771 (926)
++++|..++++.+..++..++...|++|++|+++||+++.+|+|++|.|+++....+ .+++..+..+++||+|
T Consensus 161 ---~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~----~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 161 ---KVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE----NEEFVEVGRLGPSDYF 233 (291)
T ss_dssp ---TCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECST----TSCEEEEEEECTTCEE
T ss_pred ---hchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCC----CCccEEEEEeCCCCEe
Confidence 889999999999999999999999999999999999999999999999999976531 1356889999999999
Q ss_pred hhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 772 GEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 772 GE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
||..+. .. .|+++||+|.++|+++.|++++|..++.++|.+..+.++....
T Consensus 234 Ge~~ll---~~------~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~ 284 (291)
T 2qcs_B 234 GEIALL---MN------RPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS 284 (291)
T ss_dssp CSGGGT---CC------CCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred cHHHHc---CC------CCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999765 22 2789999999999999999999999999999988877765544
No 4
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.97 E-value=4.9e-30 Score=293.90 Aligned_cols=263 Identities=15% Similarity=0.186 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeE
Q 002414 451 KRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFY 530 (926)
Q Consensus 451 r~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~ 530 (926)
|.+-..+...+.|+++++|++++++.+..|+..++.+.|++|++|+++||.++.+|||++|.|+++...++... .+..
T Consensus 135 ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~--~v~~ 212 (416)
T 3tnp_B 135 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGN 212 (416)
T ss_dssp CCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEE--EEEE
T ss_pred CCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEE--EEEE
Confidence 44455666788999999999999999999999999999999999999999999999999999999985555443 3789
Q ss_pred eCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHH
Q 002414 531 LSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAAC 610 (926)
Q Consensus 531 l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~ 610 (926)
+.+|++|||.+++. .. +|++||+|.++|+++.|++++|..++.++ +.....
T Consensus 213 l~~G~~fGe~all~---~~------pr~atv~A~~d~~l~~i~r~~f~~ll~~~------~~~~~~-------------- 263 (416)
T 3tnp_B 213 YDNRGSFGELALMY---NT------PKAATITATSPGALWGLDRVTFRRIIVKN------NAKKRK-------------- 263 (416)
T ss_dssp EESCCEECGGGGTS---CC------CCSSEEEESSSEEEEEEEHHHHHHHHHHH------HHHHSS--------------
T ss_pred ecCCCEEeeHHHhc---CC------CcccEEEEccCeEEEEEeehhhhhhhhcc------hhHHHH--------------
Confidence 99999999999852 22 38999999999999999999999999887 321110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhh
Q 002414 611 SIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKML 690 (926)
Q Consensus 611 ~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L 690 (926)
.+..++
T Consensus 264 --------------------------------------------------------------------------~~~~~L 269 (416)
T 3tnp_B 264 --------------------------------------------------------------------------MYESFI 269 (416)
T ss_dssp --------------------------------------------------------------------------SSSSSG
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 112345
Q ss_pred hhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCC-CCCCCCeEEEEecCCCC
Q 002414 691 MTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNIN-GGTLGGFFNLAHLGTGD 769 (926)
Q Consensus 691 ~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~-~~~~g~~~~~~~l~~Gd 769 (926)
. ++++|..++++++..++..++.+.|++|++|+++||+++.+|||++|.|+++..+..+ +...|++..+..+++|+
T Consensus 270 ~---~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~ 346 (416)
T 3tnp_B 270 E---SLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQ 346 (416)
T ss_dssp G---GCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTC
T ss_pred h---hchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCC
Confidence 5 8899999999999999999999999999999999999999999999999999765310 00126678899999999
Q ss_pred eehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHH
Q 002414 770 LCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTY 830 (926)
Q Consensus 770 ~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~ 830 (926)
+|||..+. .. .++++||+|+++|+++.|++++|..++..+|.+..+.++...
T Consensus 347 ~fGE~all---~~------~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~ 398 (416)
T 3tnp_B 347 YFGELALV---TN------KPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYE 398 (416)
T ss_dssp EESGGGGT---CC------SCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----
T ss_pred EecHHHHh---CC------CCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999765 22 278999999999999999999999999999988766554433
No 5
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=269.82 Aligned_cols=236 Identities=19% Similarity=0.206 Sum_probs=204.8
Q ss_pred HHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 459 GLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 459 ~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
..+.|+++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|+|++|.|+++. ++.. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-~~~~-----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-NDNK-----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-TTSC-----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-CCEE-----EEecCCCCeee
Confidence 35789999999999999999999999999999999999999999999999999999886 3322 58999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHHHHHHHH
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSIQAAWRR 618 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~q~~~~~ 618 (926)
|.+++. .. +++++++|.++|+++.|++++|..++.++ |..+..
T Consensus 79 e~~l~~---~~------~~~~tv~a~~~~~~~~i~~~~~~~~~~~~------~~~~~~---------------------- 121 (246)
T 3of1_A 79 ELALMY---NS------PRAATVVATSDCLLWALDRLTFRKILLGS------SFKKRL---------------------- 121 (246)
T ss_dssp HHHHHH---TC------CCSSEEEESSCEEEEEEEHHHHHHTTTTT------TSHHHH----------------------
T ss_pred hhHHhc---CC------CCCcEEEECCCeEEEEEEhHHHHHHHHHh------HHHHHH----------------------
Confidence 999863 22 37899999999999999999999998877 221110
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhhhhccCCcc
Q 002414 619 YKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKMLMTDFKMPL 698 (926)
Q Consensus 619 ~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L~~~l~~pl 698 (926)
....++. ++|+
T Consensus 122 ------------------------------------------------------------------~~~~~l~---~~~~ 132 (246)
T 3of1_A 122 ------------------------------------------------------------------MYDDLLK---SMPV 132 (246)
T ss_dssp ------------------------------------------------------------------HSHHHHH---HCGG
T ss_pred ------------------------------------------------------------------HHHHHHh---hChh
Confidence 1123455 8899
Q ss_pred ccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhh
Q 002414 699 FQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTW 778 (926)
Q Consensus 699 F~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~ 778 (926)
|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+. + .+..+++||+|||..+..
T Consensus 133 f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~------~---~~~~l~~g~~fGe~~~~~ 203 (246)
T 3of1_A 133 LKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ------G---VINKLKDHDYFGEVALLN 203 (246)
T ss_dssp GTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT------E---EEEEEETTCEECHHHHHH
T ss_pred hhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC------c---eEEEcCCCCcccHHHHhC
Confidence 9999999999999999999999999999999999999999999999997641 1 789999999999997652
Q ss_pred ccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHH
Q 002414 779 ALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSK 824 (926)
Q Consensus 779 ~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~ 824 (926)
. .|+.+||+|+++|+++.|++++|..++..+|++..+
T Consensus 204 ~---------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 204 D---------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp T---------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred C---------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 2 378999999999999999999999999999887654
No 6
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=289.39 Aligned_cols=259 Identities=20% Similarity=0.266 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeE
Q 002414 451 KRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFY 530 (926)
Q Consensus 451 r~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~ 530 (926)
|.+-.++...+.|+++++|.+++++.+..|+..++.+.|++|++|+++||+++.+|+|.+|.|+++. + +. .+..
T Consensus 120 ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-~-~~----~v~~ 193 (381)
T 4din_B 120 KDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-N-GE----WVTN 193 (381)
T ss_dssp CCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-T-TE----EEEE
T ss_pred CCHHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-C-Ce----Eeee
Confidence 3344445567899999999999999999999999999999999999999999999999999999986 2 32 2688
Q ss_pred eCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHH
Q 002414 531 LSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAAC 610 (926)
Q Consensus 531 l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~ 610 (926)
+++|++|||.+++. .. +|++|++|.++|+++.|++++|..++.++ +.....
T Consensus 194 l~~G~~fGe~all~---~~------~r~atv~A~~~~~l~~i~~~~f~~ll~~~------~~~~~~-------------- 244 (381)
T 4din_B 194 ISEGGSFGELALIY---GT------PRAATVKAKTDLKLWGIDRDSYRRILMGS------TLRKRK-------------- 244 (381)
T ss_dssp EESSCCBCGGGGTS---CC------BCSSEEEESSSCEEEEEEHHHHHHHHHHH------HHHHHH--------------
T ss_pred CCCCCEEEchHHhc---CC------CcceEEEECCCEEEEEEchHHHHHhhhhh------hHHHHH--------------
Confidence 99999999999852 22 38999999999999999999999999988 332210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccccchHHHHHHHHHHhcccccCCCCCCcchhHHHHHhh
Q 002414 611 SIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSLGATIYPSRFAAHALLAAQSNRSLLLQKPAEPDFRLAFRKML 690 (926)
Q Consensus 611 ~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~~~~~~as~~~~~~~~~~~~~~~~~~~kp~~pd~~~~i~~~L 690 (926)
.+..++
T Consensus 245 --------------------------------------------------------------------------~~~~~L 250 (381)
T 4din_B 245 --------------------------------------------------------------------------MYEEFL 250 (381)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHh
Confidence 122355
Q ss_pred hhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCe
Q 002414 691 MTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDL 770 (926)
Q Consensus 691 ~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~ 770 (926)
. ++++|..+++.++..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+ .+++..+..+++||+
T Consensus 251 ~---~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~----~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 251 S---KVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSP----NEEYVEVGRLGPSDY 323 (381)
T ss_dssp H---HCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSS----SSCCCEEEEECTTCE
T ss_pred h---hhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCC----CCceEEEEEeCCCCE
Confidence 5 889999999999999999999999999999999999999999999999999977531 134677999999999
Q ss_pred ehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 771 CGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 771 fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
|||..+. .. .|+++||+|+++|+++.|++++|..++..+|.+..+.+++.-++.+
T Consensus 324 fGe~all---~~------~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l~ 378 (381)
T 4din_B 324 FGEIALL---LN------RPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFIS 378 (381)
T ss_dssp ECTTGGG---SC------CBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHHT
T ss_pred echHHHh---CC------CCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 9999766 22 2789999999999999999999999999999998888776655543
No 7
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.96 E-value=1.8e-28 Score=252.99 Aligned_cols=179 Identities=26% Similarity=0.371 Sum_probs=164.7
Q ss_pred HhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhcCCccc
Q 002414 390 QSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLF 469 (926)
Q Consensus 390 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF 469 (926)
++++.+..+|+++++.+++||++++||++|+.||++||+|.|+. ++.+++++++.||+.||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 57889999999999999999999999999999999999999974 88999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCC
Q 002414 470 QNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPN 549 (926)
Q Consensus 470 ~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~ 549 (926)
.+++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++..+|.. ..+++|++|||.+++. ..
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~g~~------~~l~~G~~fGe~~~~~---~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKE------MKLSDGSYFGEICLLT---RG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTTSCC------EEEETTCEECHHHHHH---CS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECCCeE------EEEcCCCEeccHHHhc---CC
Confidence 99999999999999999999999999999999999999999999998644332 5789999999998852 12
Q ss_pred CCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 550 SSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 550 ~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+++++|+|.++|+++.|++++|.++++++
T Consensus 152 ------~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 180 (202)
T 3bpz_A 152 ------RRTASVRADTYCRLYSLSVDNFNEVLEEY 180 (202)
T ss_dssp ------BCSSEEEESSCEEEEEEEHHHHHHHHHHS
T ss_pred ------CcccEEEEeeEEEEEEEEHHHHHHHHHHC
Confidence 37899999999999999999999999999
No 8
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.96 E-value=3.9e-28 Score=249.54 Aligned_cols=186 Identities=22% Similarity=0.369 Sum_probs=169.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhcCCcccc
Q 002414 391 SKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLNVPLFQ 470 (926)
Q Consensus 391 ~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~ 470 (926)
+++.+..+|+++++.+++||+++++|++|+.||++||+|.|+ .++.+++++++.||++||.++..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 678899999999999999999999999999999999999998 4889999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCC
Q 002414 471 NLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNS 550 (926)
Q Consensus 471 ~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~ 550 (926)
+++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++..+|. .+..+++|++|||.+++. ..
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~-----~~~~l~~G~~fGe~~~~~---~~- 151 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV-----IATSLSDGSYFGEICLLT---RE- 151 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSC-----EEEEECTTCEESCHHHHH---SS-
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCe-----EEEEecCCCEechHHHcC---CC-
Confidence 999999999999999999999999999999999999999999999874443 268999999999998852 22
Q ss_pred CCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHH
Q 002414 551 SHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAF 597 (926)
Q Consensus 551 ~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f 597 (926)
+++++++|.++|+++.|++++|.++++++ |.+...+
T Consensus 152 -----~~~~~~~a~~~~~l~~i~~~~f~~ll~~~------p~~~~~~ 187 (198)
T 2ptm_A 152 -----RRVASVKCETYCTLFSLSVQHFNQVLDEF------PAMRKTM 187 (198)
T ss_dssp -----CCSSEEEESSCEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_pred -----ccceEEEEeeEEEEEEEeHHHHHHHHHHC------hHHHHHH
Confidence 37899999999999999999999999999 6655533
No 9
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.96 E-value=7.4e-29 Score=257.77 Aligned_cols=185 Identities=22% Similarity=0.368 Sum_probs=161.6
Q ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcCCCHHHHHhcCChhHHHHHHHHHHHHHhcC
Q 002414 386 QIYLQSKTIRSEEMRLKGQEIEQWMGFRKLSRDLQQKLRNYRQYVWRETKGVDVENLLNNLPSDLKRNIKSELGLELLLN 465 (926)
Q Consensus 386 ~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~ri~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~l~~~~L~~ 465 (926)
++|+++++.+.++|+++|+.+++||++++||++|+.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999998877 7
Q ss_pred CcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhh
Q 002414 466 VPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWA 545 (926)
Q Consensus 466 i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~ 545 (926)
+|+|++++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++. ++ . .+..+++|++|||.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-~~-~----~~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-DN-T----VLAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-SS-C----EEEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-CC-e----EEEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999986 23 2 37899999999999874
Q ss_pred cCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 546 LDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 546 l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
... .++++++|+|.++|+++.|++++|.++++++
T Consensus 152 -~~~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~ 185 (212)
T 3ukn_A 152 -KEQ----VIKTNANVKALTYCDLQYISLKGLREVLRLY 185 (212)
T ss_dssp -SSS----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred -cCC----CCCcceEEEEcccEEEEEEeHHHHHHHHHHC
Confidence 211 1148999999999999999999999999999
No 10
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.95 E-value=2.3e-27 Score=276.96 Aligned_cols=345 Identities=14% Similarity=0.098 Sum_probs=228.8
Q ss_pred cCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCee-
Q 002414 445 NLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRM- 523 (926)
Q Consensus 445 ~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~- 523 (926)
..|+..|.+...+...+.|+++++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|++|.|+++..+.+..
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 3577788888888889999999999999999999999999999999999999999999999999999999997653321
Q ss_pred eeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHH-hhch
Q 002414 524 SFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFR-VYSH 602 (926)
Q Consensus 524 ~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~-~~s~ 602 (926)
....+..+++|++|||.+ +. .. +++++++|.++|+++.|++++|.+++.++ |.+...+. ..+.
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l~---~~------~~~~tv~A~~~~~l~~i~~~~~~~l~~~~------p~~~~~l~~~~~~ 169 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-LD---NT------PRHATIVTRESSELLRIEQEDFKALWEKY------RQYMAGLLAPPYG 169 (469)
T ss_dssp GCEEEEEECTTCEECGGG-GG---TC------BCSSEEEESSSEEEEEEEHHHHHHHHHHH------GGGTTTTSCTTTS
T ss_pred cceEEEEccCCCCcchhh-hC---CC------CccceEEEccceeEEEEcHHHHHHHHHhC------HHHHHHHHHHHHH
Confidence 112478999999999988 52 11 37899999999999999999999999999 33322211 1111
Q ss_pred hhHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCc------------cccc-ccchHHH-
Q 002414 603 QWRTWAAC--------SIQAAWRRYKRRNLEEFLNAEENRLQGEWAAGGGITSSL------------GATI-YPSRFAA- 660 (926)
Q Consensus 603 ~~~~~~~~--------~~q~~~~~~~~~~~~~~l~~~e~r~~~~~~~~~~~~~~~------------~~~~-~as~~~~- 660 (926)
..+.+... ....+..+...+.....+........+.. .......+ |.+- -.||...
T Consensus 170 ~l~~~~~~~~l~~~~~~~~~~~~~~~~rla~~Ll~~~~~~~~~~~--~~~~~~~~~~t~~ela~~llg~~~~t~SR~~~~ 247 (469)
T 1o7f_A 170 VMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRK--YHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAV 247 (469)
T ss_dssp CSCC------------CCCSHHHHHHHHHHHHHHHHCGGGSEEEE--CSSCEEEEEEEHHHHHHHHHHSSSCCSCHHHHH
T ss_pred HHHhccCcccCCCcCCCchHHHHHHHHHHHHHHHhcCCcceeecc--ccceEeeeeccccchHHHHHhcCCCCCCHHHHH
Confidence 11111110 00001111111111111111110000000 00000000 0000 0011100
Q ss_pred HHHHHHHhcc-----------------------------------------------------------cccCCCCC---
Q 002414 661 HALLAAQSNR-----------------------------------------------------------SLLLQKPA--- 678 (926)
Q Consensus 661 ~~~~~~~~~~-----------------------------------------------------------~~~~~kp~--- 678 (926)
..+..+.+.+ ...+.+|+
T Consensus 248 ~~l~~L~~~G~I~~~~~~i~i~d~~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~r 327 (469)
T 1o7f_A 248 GMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQR 327 (469)
T ss_dssp HHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHHHHhccceeeccccceeeecceEEEEehhhhccCCCcchhhhhhhhHHHHHHHHHHhhcCchHHHHHHHcCCchhc
Confidence 0000011000 01112222
Q ss_pred CcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcce-EEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCC
Q 002414 679 EPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKP-VLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757 (926)
Q Consensus 679 ~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~-~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g 757 (926)
..+-...+..+|. ++|+|..++++.++.++..+.. +.|++|++|+++||+++.+|||++|.|+++..+
T Consensus 328 ~~~~~~~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~-------- 396 (469)
T 1o7f_A 328 TVDDLEIIYDELL---HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG-------- 396 (469)
T ss_dssp CHHHHHHHHHHHT---TCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETT--------
T ss_pred CHHHHHHHHHHHh---cCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcC--------
Confidence 1222334566777 9999999999999999999985 599999999999999999999999999998642
Q ss_pred CeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEcc-ceEEEEEcHHHHHHHHHHcHHHHHHHHHH
Q 002414 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVART-EVEAFALTTDDLKAVASKSRRLRSKLLRH 828 (926)
Q Consensus 758 ~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~-~~e~~~l~~~dl~~l~~~~p~l~~~~l~~ 828 (926)
+ ..+..+++||+|||..+. .. .|+++||+|++ +|+++.|++++|..++.++|.+..++.++
T Consensus 397 ~-~~~~~l~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 397 K-GVVCTLHEGDDFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp T-EEEEEEETTCEECGGGGT---CC------SCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred C-eeEEEecCCCEEEEehhh---cC------CCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 1 278999999999999765 22 27899999998 79999999999999999999877665544
No 11
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.94 E-value=1.8e-25 Score=283.86 Aligned_cols=338 Identities=15% Similarity=0.102 Sum_probs=216.4
Q ss_pred HHhcCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCC
Q 002414 442 LLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGG 521 (926)
Q Consensus 442 ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~ 521 (926)
.|+.-| .-|.+-..++....|+++++|+++++..+.+||..|+++.|++|++||++||+++++|+|++|+|.|+..+.+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 444444 4465555667778899999999999999999999999999999999999999999999999999999875321
Q ss_pred -eeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhh
Q 002414 522 -RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVY 600 (926)
Q Consensus 522 -~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~ 600 (926)
......+..+++|++||| ++++ +. +|++||+|.++|++++|++++|+.++.++ |+.......-
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all~--------n~-pRtaTv~a~~~s~l~~l~r~~F~~i~~~~------~e~~~~~~~~ 166 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SILD--------NT-PRHATIVTRESSELLRIEQEDFKALWEKY------RQYMAGLLAP 166 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGGG--------TC-CCSSEEEESSSEEEEEEEHHHHHHHHHHH------HHHHTTTSCT
T ss_pred CCCCceeEEEecCCcchhh-hhcc--------CC-CcceEEEeccceEEEEEEHHHHHHHHHhC------hHHHHHHHHH
Confidence 111134789999999999 6643 22 39999999999999999999999999998 4322211100
Q ss_pred ch-hhHhH---HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcC--CCCCCC--c-----------ccccccchHHH
Q 002414 601 SH-QWRTW---AACSIQAAWRRYKRRNLEEFLNAEEN-RLQGEWAAG--GGITSS--L-----------GATIYPSRFAA 660 (926)
Q Consensus 601 s~-~~~~~---~~~~~q~~~~~~~~~~~~~~l~~~e~-r~~~~~~~~--~~~~~~--~-----------~~~~~as~~~~ 660 (926)
.. ..... .............-......+..... +........ ...... . ......++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~ 246 (999)
T 4f7z_A 167 PYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQA 246 (999)
T ss_dssp TTSCSCCSSCC------CCSCCHHHHHHHHHHHHHHHHHCGGGSEEEEETTEEEEEEEEHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHhhhhhhhcCcccccCchhhcccccccccchhccccccccccccccccccccccccccccccccccCccccccccc
Confidence 00 00000 00000000000000000001111100 000000000 000000 0 00000000000
Q ss_pred -------------------------------------------------------HHHHHHHhcc-----cccCCCC---
Q 002414 661 -------------------------------------------------------HALLAAQSNR-----SLLLQKP--- 677 (926)
Q Consensus 661 -------------------------------------------------------~~~~~~~~~~-----~~~~~kp--- 677 (926)
+....+.+.. ...+.++
T Consensus 247 ~~~~q~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~l~k~~~~ 326 (999)
T 4f7z_A 247 VGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKPPGQ 326 (999)
T ss_dssp HHHHHHHHHTTSEEETTCCSSCCSSSCEEEEGGGGSTTCCCCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred chhhhhhccccccccchhccccccchhhhhhhccccccccccccccccchhhhhhhhhhhhcccccchhhhhhhcCCccc
Confidence 0000000000 0111111
Q ss_pred CCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEE-eCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCC
Q 002414 678 AEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVL-YEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTL 756 (926)
Q Consensus 678 ~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~-~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~ 756 (926)
...+-...+..+|. ++|.|+.|+...+..|+..+.... +++|++|++|||+++.+|||++|+|+|+...
T Consensus 327 rt~ed~e~l~e~L~---~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~------- 396 (999)
T 4f7z_A 327 RTVDDLEIIYDELL---HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYG------- 396 (999)
T ss_dssp CCHHHHHHHHHHHT---TCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETT-------
T ss_pred ccHHHHHHHHHHHH---hhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcC-------
Confidence 12233345666777 999999999999999999998654 5789999999999999999999999998532
Q ss_pred CCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccc-eEEEEEcHHHHHHHHHH
Q 002414 757 GGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTE-VEAFALTTDDLKAVASK 817 (926)
Q Consensus 757 g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~-~e~~~l~~~dl~~l~~~ 817 (926)
+..++.|++||+|||++|. .. .||.+||+|.++ |++++|+++||.+++.+
T Consensus 397 --~~~v~~L~~Gd~FGElALL---~~------~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 397 --KGVVCTLHEGDDFGKLALV---ND------APRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp --TEEEEEEETTCEECGGGGT---CS------CBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred --CcceEEecCCCcccchhhc---cC------CCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 2257889999999999865 22 389999999985 99999999999999876
No 12
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=9e-22 Score=205.94 Aligned_cols=212 Identities=11% Similarity=0.129 Sum_probs=142.4
Q ss_pred cchHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEe
Q 002414 78 PLWNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLN 157 (926)
Q Consensus 78 ~~Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV 157 (926)
+.||.+++++.+++++++++.... ..+......+..+|.+++++|.+|++++|.++. +
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~~~----------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-~----------- 65 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVECTM----------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSG-D----------- 65 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHH----------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS-C-----------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc----------ccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc-c-----------
Confidence 348999999999988877765321 122334567889999999999999999999752 1
Q ss_pred ccHHHHHHHHhhhhhhhHHHhhccHhHHHhhhhhcccCCcchhhchhhhHHHHHHHHHHHHHhhhhhhhhhhccccccch
Q 002414 158 EYAQEITRKYLLFFLPIDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVIFQYVPRLIRIYPLFTNVTRTSCKLDE 237 (926)
Q Consensus 158 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l~~yl~rllri~~l~~~~~~~~~~~~~ 237 (926)
.++|+++ +++|+++++|++...... .+.+.. +.+|++|++| +.|++|+.+..+...+. +..
T Consensus 66 ------~~~y~~~-~iiDllailP~~~~~~~~-----~~~~~~---~~lr~lRllR-llR~~r~~~~~~~~~~~---l~~ 126 (223)
T 1orq_C 66 ------PAGYVKK-TLYEIPALVPAGLLALIE-----GHLAGL---GLFRLVRLLR-FLRILLIISRGSKFLSA---IAD 126 (223)
T ss_dssp ------HHHHHHH-HHHHCTTHHHHHHHHHHH-----HHHHTT---TCHHHHHHHH-HHHHHHHHHSCSSHHHH---HHH
T ss_pred ------HHHHHHH-hHHHHHHHHHHHHHHHHh-----cchhHH---HHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHH
Confidence 4799998 999999999998655310 000011 2333333222 33444433322111111 111
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCcccccccCCCCCCccccccCCCCCCCCCCCcc
Q 002414 238 SKFFKAAFNLLL-YMVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFYCHDTAGNNTFVKDFCPTKPQNTSIFDF 316 (926)
Q Consensus 238 ~~~~~~i~~ll~-~~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~~~~~~~~~sWi~~~~~~~~~~~~~~~~ 316 (926)
.-....+..++. .+++.|+.||++|.+.- .+
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------~~--------------------- 158 (223)
T 1orq_C 127 AADKIRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------PD--------------------- 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------SS---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CC---------------------
Confidence 000112333333 34568999999876530 00
Q ss_pred hhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002414 317 GIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQS 391 (926)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 391 (926)
+++....|..|+||+++|||||||||++|.|..|+++++++|++|.+++|+.+|.+++.+++
T Consensus 159 -------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 159 -------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp -------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123468999999999999999999999999999999999999999999999999998875
No 13
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.75 E-value=8.9e-18 Score=195.71 Aligned_cols=237 Identities=13% Similarity=0.166 Sum_probs=145.1
Q ss_pred CCCCcc----hHHHHHHHHHHHHhhccceeeeccccCcccccc-----------------ccccccchHHHHHHHHHHHH
Q 002414 74 SPHGPL----WNWIFLISCLIAISLDPLFLYIPVISDEKKCLR-----------------LDNKLGTAAIFLRSFLDFFH 132 (926)
Q Consensus 74 ~P~s~~----Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~d~~f 132 (926)
+|.+.. |+.+++++++.++++..+.-+ |.......-.+ ........+.+++.++.++|
T Consensus 174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF 252 (514)
T 2r9r_B 174 YPESSGPARIIAIVSVMVILISIVSFCLETL-PIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF 252 (514)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhhhcc-ccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 577643 888888888888877666421 21110000000 00123457889999999999
Q ss_pred HHHHHhhhceeEecCCCCCCCCeEeccHHHHHHHHhhh-hhhhHHHhhccHhHHHhhhhhcccCCcchhhchhhhHHHHH
Q 002414 133 IIYVIFRLRTKSFAPCWEYPQRSLNEYAQEITRKYLLF-FLPIDLLAILPLPQVVVSVIIQTTRGSKVLSGLKLLKFFVI 211 (926)
Q Consensus 133 ~iDi~l~f~t~y~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llr~~~l 211 (926)
.+|++++|.++-. .++|+++ |.++|+++++|+.+.+...... ..+.........+|++|
T Consensus 253 tiE~ilR~~~~~~------------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~-~~~~~~~~~~~~lrvlR- 312 (514)
T 2r9r_B 253 SFEFLVRFFACPS------------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESN-KSVLQFQNVRRVVQIFR- 312 (514)
T ss_dssp HHHHHHHHHHSSC------------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTS-CSHHHHHTTHHHHHHHH-
T ss_pred HHHHHHHHHhCCc------------------HHHHHhchhHHHHHHHHHHHHHHHHhhhcc-ccchhhhhHHHHHHHHH-
Confidence 9999999986411 2479998 8999999999997554322110 00100011123344333
Q ss_pred HHHHHHHHhhhhhhhhhhccccccc-hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHhHHhhhcccCCCCccccc
Q 002414 212 FQYVPRLIRIYPLFTNVTRTSCKLD-ESKFFKAAFNLLLY-MVASHVFGALWYFFAIVREVACWKSACINHTGCSHASFY 289 (926)
Q Consensus 212 ~~yl~rllri~~l~~~~~~~~~~~~-~~~~~~~i~~ll~~-~l~~H~~aC~w~~i~~~~~~~~w~~~~~~~~~c~~~y~~ 289 (926)
+.|++|++++.+.......+.. .......+..++++ ++.++++||++|++. .
T Consensus 313 ---llRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e--~--------------------- 366 (514)
T 2r9r_B 313 ---IMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--A--------------------- 366 (514)
T ss_dssp ---HHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH--T---------------------
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheee--c---------------------
Confidence 4444444444443222111000 00111223333333 234677777776442 0
Q ss_pred ccCCCCCCccccccCCCCCCCCCCCcchhhHhhhhcCccccCChhhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHH
Q 002414 290 CHDTAGNNTFVKDFCPTKPQNTSIFDFGIFQDALQSGIVEVTDFPQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIV 369 (926)
Q Consensus 290 ~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~ 369 (926)
.. ..+.+..|..|+||++.|||||||||+.|.+..+++++++
T Consensus 367 ----~~----------------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~ 408 (514)
T 2r9r_B 367 ----DE----------------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSL 408 (514)
T ss_dssp ----TC----------------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred ----cC----------------------------------CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehh
Confidence 00 1122345789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHh
Q 002414 370 ITISGLVFFLYLIGNIQIYLQSKTIR 395 (926)
Q Consensus 370 ~~i~G~~~fa~iig~i~~il~~~~~~ 395 (926)
+|++|++++++.+|.+.+.++....+
T Consensus 409 ~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 409 CAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887766553
No 14
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.73 E-value=4.6e-17 Score=160.12 Aligned_cols=139 Identities=24% Similarity=0.337 Sum_probs=115.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEe
Q 002414 439 VENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATM 518 (926)
Q Consensus 439 e~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~ 518 (926)
.+++++.||+++|.++..+++.++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999772
Q ss_pred eCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHH
Q 002414 519 VGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHA 596 (926)
Q Consensus 519 ~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~ 596 (926)
+. .+..+++|++||+.+++ ... ..++.++++|.++|+++.|++++|.++++++ |.+...
T Consensus 85 --~~----~~~~~~~G~~fG~~~~~---~~~----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------p~~~~~ 143 (160)
T 4f8a_A 85 --DE----VVAILGKGDVFGDVFWK---EAT----LAQSCANVRALTYCDLHVIKRDALQKVLEFY------TAFSHS 143 (160)
T ss_dssp --TE----EEEEEETTCEEECCTTT---CSS----CCBCSSEEEESSCEEEEEEEHHHHHHHHHHC------HHHHHH
T ss_pred --CE----EEEEecCCCEeCcHHHh---cCc----ccceEEEEEECCceEEEEEcHHHHHHHHHHH------HHHHHH
Confidence 22 36899999999999874 221 0237899999999999999999999999999 665553
No 15
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.73 E-value=4.1e-17 Score=156.96 Aligned_cols=131 Identities=20% Similarity=0.296 Sum_probs=113.7
Q ss_pred hhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEE---EEec
Q 002414 689 MLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFN---LAHL 765 (926)
Q Consensus 689 ~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~---~~~l 765 (926)
.|+ ++|+|++++++.++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.. +..+
T Consensus 7 ~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~~~ 78 (142)
T 3mdp_A 7 RLR---VYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNG-----GAGSAANSTVCSV 78 (142)
T ss_dssp GGG---GSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC--------------CEEEEE
T ss_pred HHh---hCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECC-----CCCceEeeeEEEe
Confidence 566 99999999999999999999999999999999999999999999999999997664 367777 9999
Q ss_pred CCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 002414 766 GTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQ 836 (926)
Q Consensus 766 ~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~ 836 (926)
+|||+|||..+. .. .++..+++|+++|+++.|++++|..++.++|.+...+++...+..+++
T Consensus 79 ~~G~~fG~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~r 140 (142)
T 3mdp_A 79 VPGAIFGVSSLI---KP------YHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLAR 140 (142)
T ss_dssp CTTCEECGGGSS---TT------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred cCCCEechHHHc---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHh
Confidence 999999988765 22 277899999999999999999999999999999999999988877754
No 16
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.72 E-value=1.2e-16 Score=162.11 Aligned_cols=141 Identities=19% Similarity=0.344 Sum_probs=125.9
Q ss_pred chhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeE
Q 002414 681 DFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFF 760 (926)
Q Consensus 681 d~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~ 760 (926)
.....+..+|. ++|+|++++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+. +|++.
T Consensus 32 ~~~~~~~~~L~---~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~-----~g~~~ 103 (187)
T 3gyd_A 32 KYFEEILEIVN---KIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIP-----NKGIQ 103 (187)
T ss_dssp GGHHHHHHHHT---TCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEET-----TTEEE
T ss_pred HHHHHHHHHHh---cCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECC-----CCCeE
Confidence 34457788899 99999999999999999999999999999999999999999999999999998864 37889
Q ss_pred EEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhh
Q 002414 761 NLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWR 838 (926)
Q Consensus 761 ~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~ 838 (926)
++..++||++|||..+.. . .++.++++|+++|+++.|++++|..++.++|.+...+++...+..+++.+
T Consensus 104 ~~~~~~~G~~fGe~~~l~---~------~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~ 172 (187)
T 3gyd_A 104 TIAKVGAGAIIGEMSMID---G------MPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLTARFR 172 (187)
T ss_dssp EEEEEETTCEESHHHHHH---C------CCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCCeeeeHHHhC---C------CCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997652 2 27789999999999999999999999999999999998887776665443
No 17
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.68 E-value=5.5e-16 Score=150.20 Aligned_cols=128 Identities=30% Similarity=0.386 Sum_probs=114.2
Q ss_pred HHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecC
Q 002414 687 RKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLG 766 (926)
Q Consensus 687 ~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~ 766 (926)
...+. +.|+|..++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+. +|++..+..++
T Consensus 4 ~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~ 75 (149)
T 2pqq_A 4 DDVLR---RNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSP-----DGRENMLAVVG 75 (149)
T ss_dssp GGGGT---SSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECT-----TSSEEEEEEEC
T ss_pred HHHhh---hChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECC-----CCcEEEEEEcC
Confidence 34566 99999999999999999999999999999999999999999999999999998764 38889999999
Q ss_pred CCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 767 TGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 767 ~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
||++|||..+. .. .++..+++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 76 ~g~~~G~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 131 (149)
T 2pqq_A 76 PSELIGELSLF---DP------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR 131 (149)
T ss_dssp TTCEESGGGGT---SC------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred CcCEechHHhc---CC------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999998665 22 2778999999999999999999999999999988877665444
No 18
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.68 E-value=1.5e-15 Score=157.22 Aligned_cols=143 Identities=24% Similarity=0.254 Sum_probs=120.6
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
++|+|+++++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..++|||+|||.
T Consensus 3 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~~g~~~G~~ 77 (216)
T 4ev0_A 3 GSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHL-----GGQERTLALLGPGELFGEM 77 (216)
T ss_dssp -CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECS-----SSCEEEEEEECTTCEECHH
T ss_pred CChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECC-----CCCEEEEEEecCCCEEeeh
Confidence 78999999999999999999999999999999999999999999999999998764 4889999999999999998
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWAACSIQAAWSQ 851 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~~~~r 851 (926)
.+.. . .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+....+.........+-.|
T Consensus 78 ~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~R 145 (216)
T 4ev0_A 78 SLLD---E------GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARRLREADLELDLLSFEEARNR 145 (216)
T ss_dssp HHHH---C------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcC---C------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 6652 2 267899999999999999999999999999999988887776655444433333333333333
No 19
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.67 E-value=6.3e-16 Score=150.78 Aligned_cols=133 Identities=17% Similarity=0.229 Sum_probs=115.0
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEe
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAH 764 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~ 764 (926)
++..+|. ++|+|..++++.++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..
T Consensus 9 ~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~ 80 (154)
T 2z69_A 9 VHQQLLQ---SHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTP-----EGQEKILEV 80 (154)
T ss_dssp HHHHHHT---TSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC----------CCEE
T ss_pred hHHHHhh---cChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECC-----CCCEEEEEE
Confidence 5667888 99999999999999999999999999999999999999999999999999997653 377889999
Q ss_pred cCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 765 LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 765 l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
+++||+|||..+. ... +++..+++|+++|+++.|++++|..++.++|.+...+++...+.+
T Consensus 81 ~~~G~~~G~~~~~---~~~-----~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl 141 (154)
T 2z69_A 81 TNERNTFAEAMMF---MDT-----PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 141 (154)
T ss_dssp ECTTEEESGGGGG---SSC-----SBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCeeccHhhc---cCC-----CCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 9999999999765 222 238999999999999999999999999999999998887766544
No 20
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.67 E-value=3e-16 Score=162.47 Aligned_cols=143 Identities=21% Similarity=0.336 Sum_probs=124.6
Q ss_pred cchhHHHHHhhhhcc-CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCC
Q 002414 680 PDFRLAFRKMLMTDF-KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGG 758 (926)
Q Consensus 680 pd~~~~i~~~L~~~l-~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~ 758 (926)
++++.++..++...+ ++|+|++++++.+..++..++...|++|++|+++||+++++|||.+|.|+++.. |
T Consensus 63 ~~L~~~i~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~--------~- 133 (212)
T 3ukn_A 63 DELRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKD--------N- 133 (212)
T ss_dssp HHHHHHHHTTCCCGGGGSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESS--------S-
T ss_pred HHHHHHHHHHHHHHHHhcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEEC--------C-
Confidence 567778887777666 899999999999999999999999999999999999999999999999999952 2
Q ss_pred eEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhh
Q 002414 759 FFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWR 838 (926)
Q Consensus 759 ~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~ 838 (926)
.++..+++||+|||..+... . .+++++||+|+++|+++.|++++|..++.++|.+...+++...+.++.+.|
T Consensus 134 -~~~~~l~~G~~fGe~~~~~~---~----~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr 205 (212)
T 3ukn_A 134 -TVLAILGKGDLIGSDSLTKE---Q----VIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205 (212)
T ss_dssp -CEEEEECTTCEEECSCCSSS---S----CCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECB
T ss_pred -eEEEEecCCCCcCcHHhccC---C----CCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccccc
Confidence 47899999999999865521 1 017899999999999999999999999999999999999988887766554
Q ss_pred h
Q 002414 839 T 839 (926)
Q Consensus 839 ~ 839 (926)
.
T Consensus 206 ~ 206 (212)
T 3ukn_A 206 E 206 (212)
T ss_dssp C
T ss_pred c
Confidence 3
No 21
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.67 E-value=5.6e-16 Score=157.78 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=112.8
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
.+|.|.++++++++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..++|||+|||.
T Consensus 11 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~-----~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 11 HIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDE-----KGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECT-----TSCEEEEEEEETTCEECCH
T ss_pred HHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECC-----CCCEEEEEEccCCcEEeeh
Confidence 77899999999999999999999999999999999999999999999999998764 4889999999999999987
Q ss_pred -hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 775 -LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 775 -~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
.+.. . .|+..+++|+++|+++.|++++|.+++.++|.+....++...+.+.
T Consensus 86 ~~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~ 137 (194)
T 3dn7_A 86 MAFQK---Q------QPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFA 137 (194)
T ss_dssp HHHHH---T------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHhc---C------CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 4441 1 2778999999999999999999999999999998877766655443
No 22
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.67 E-value=3.7e-16 Score=154.17 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=113.0
Q ss_pred hhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEE
Q 002414 682 FRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFN 761 (926)
Q Consensus 682 ~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~ 761 (926)
-...+..+|. ++|+|+.++++.++.++..++.+.|++|++|+++||+++++|+|++|.|+++... +|++..
T Consensus 32 ~~~~~~~~l~---~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~------~g~~~~ 102 (161)
T 3idb_B 32 QRNRLQEACK---DILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC------DGVGRC 102 (161)
T ss_dssp HHHHHHHHHT---TCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEE------TTEEEE
T ss_pred HHHHHHHHHh---CCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcC------CCCeEE
Confidence 3445777888 9999999999999999999999999999999999999999999999999999833 378899
Q ss_pred EEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHH
Q 002414 762 LAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKL 825 (926)
Q Consensus 762 ~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~ 825 (926)
+..+++|++|||..+. .. .++.++++|+++|+++.|++++|..++.++|.+..++
T Consensus 103 ~~~~~~G~~fGe~~~~---~~------~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 157 (161)
T 3idb_B 103 VGNYDNRGSFGELALM---YN------TPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 157 (161)
T ss_dssp EEEEESCCEECGGGGT---CC------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC
T ss_pred EEEcCCCCEechHHHH---cC------CCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 9999999999999765 22 2789999999999999999999999999999876543
No 23
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.67 E-value=4.7e-16 Score=159.13 Aligned_cols=134 Identities=21% Similarity=0.330 Sum_probs=114.5
Q ss_pred cchhHHHHHhhhhcc--CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCC
Q 002414 680 PDFRLAFRKMLMTDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757 (926)
Q Consensus 680 pd~~~~i~~~L~~~l--~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g 757 (926)
++++.++..++...+ ++|+|++++++.++.++..++...|++|++|+++||+++++|||.+|.|+++..+ |
T Consensus 58 ~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~-------g 130 (198)
T 2ptm_A 58 ESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSD-------G 130 (198)
T ss_dssp HHHHHHHHHHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTT-------S
T ss_pred HHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecC-------C
Confidence 456666655444333 9999999999999999999999999999999999999999999999999999632 3
Q ss_pred CeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 758 ~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
+ .+..+++||+|||..+... .++++||+|+++|+++.|++++|..++.++|.+...+++...+
T Consensus 131 ~--~~~~l~~G~~fGe~~~~~~---------~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (198)
T 2ptm_A 131 V--IATSLSDGSYFGEICLLTR---------ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVR 193 (198)
T ss_dssp C--EEEEECTTCEESCHHHHHS---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred e--EEEEecCCCEechHHHcCC---------CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 3 7889999999999965522 2789999999999999999999999999999998877665443
No 24
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.65 E-value=1.4e-15 Score=159.49 Aligned_cols=131 Identities=14% Similarity=0.159 Sum_probs=116.8
Q ss_pred HHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecC
Q 002414 687 RKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLG 766 (926)
Q Consensus 687 ~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~ 766 (926)
..+|. ++|+|..+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..++
T Consensus 5 ~~~L~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~ 76 (231)
T 3e97_A 5 LDDLK---RSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSL-----GGRERVLGDIY 76 (231)
T ss_dssp HHHHH---TSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC-------CEEEEEEEE
T ss_pred HHHHh---cChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECC-----CCceEEEEecC
Confidence 45677 99999999999999999999999999999999999999999999999999998764 48899999999
Q ss_pred CCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 767 TGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 767 ~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
|||+|||..+. .. .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+.
T Consensus 77 ~g~~~G~~~~~---~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 135 (231)
T 3e97_A 77 APGVVGETAVL---AH------QERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVT 135 (231)
T ss_dssp SSEEESTTTTT---CC------CCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCEEeeHHHh---CC------CCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 99999998765 22 2789999999999999999999999999999999888877666443
No 25
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.64 E-value=4.2e-15 Score=154.32 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=116.3
Q ss_pred hhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCC
Q 002414 689 MLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTG 768 (926)
Q Consensus 689 ~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~G 768 (926)
+|. ++|+|+.+++++++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..++||
T Consensus 4 ~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~G~~~~~~~~~~G 75 (220)
T 3dv8_A 4 FEN---YFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSD-----EGREITLYRLFDM 75 (220)
T ss_dssp -CC---SCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECT-----TSCEEEEEEECTT
T ss_pred hHH---hChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECC-----CCCEEEEEecCCC
Confidence 566 99999999999999999999999999999999999999999999999999998764 4889999999999
Q ss_pred Ce--ehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 002414 769 DL--CGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQ 836 (926)
Q Consensus 769 d~--fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~ 836 (926)
|+ |||..+. +. .|+..+++|+++|+++.|++++|..++.++|.+....++...+.+...
T Consensus 76 ~~~~~g~~~~~---~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 136 (220)
T 3dv8_A 76 DMCLLSASCIM---RS------IQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDV 136 (220)
T ss_dssp CEESGGGGGGC---TT------CCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CeeehhHHHHh---CC------CCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 99 7888765 22 278899999999999999999999999999999988877766655443
No 26
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.64 E-value=6.6e-16 Score=148.30 Aligned_cols=125 Identities=22% Similarity=0.312 Sum_probs=112.8
Q ss_pred cCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeee
Q 002414 445 NLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMS 524 (926)
Q Consensus 445 ~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~ 524 (926)
.+|..+|.+...+...++|+++++|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|++.. ++ .
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~g-~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-EG-V-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-TT-E--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-CC-E--
Confidence 5788899999999999999999999999999999999999999999999999999999999999999999954 33 2
Q ss_pred eeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 525 FQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 525 ~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.+..+++|++|||.+++. .. ++.++++|.++|+++.|++++|.++++++
T Consensus 83 --~~~~~~~G~~fGe~~~l~---~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 131 (139)
T 3ocp_A 83 --KLCTMGPGKVFGELAILY---NC------TRTATVKTLVNVKLWAIDRQCFQTIMMRT 131 (139)
T ss_dssp --EEEEECTTCEESCHHHHH---CC------CCSSEEEESSCEEEEEEEHHHHHHHHTC-
T ss_pred --EEEEeCCCCEeccHHHHC---CC------CcceEEEECcceEEEEEcHHHHHHHHhhC
Confidence 368999999999998752 22 37899999999999999999999999999
No 27
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.64 E-value=1.4e-16 Score=152.58 Aligned_cols=126 Identities=51% Similarity=0.812 Sum_probs=104.7
Q ss_pred hhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEE--ecC
Q 002414 689 MLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLA--HLG 766 (926)
Q Consensus 689 ~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~--~l~ 766 (926)
+|+ ++|+|+.+++++++.++..++.+.|++|++|+++||+++.+|||++|.|++. .+. +|++.++. .++
T Consensus 7 ~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~-----~g~~~~~~~~~l~ 77 (137)
T 1wgp_A 7 GVR---RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTD-----GGRSGFYNRSLLK 77 (137)
T ss_dssp SCS---SCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCS-----SCSSSSSCEEECC
T ss_pred HHH---cCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcC-----CCcceeeeeeeec
Confidence 456 9999999999999999999999999999999999999999999999999965 332 36666666 999
Q ss_pred CCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHH
Q 002414 767 TGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRS 823 (926)
Q Consensus 767 ~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~ 823 (926)
+||+|||..+.+.++.......++++++++|+++|+++.|++++|.+++.++|.+++
T Consensus 78 ~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 78 EGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp TTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred CCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 999999997522224332122225689999999999999999999999999887654
No 28
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.64 E-value=1.7e-15 Score=159.40 Aligned_cols=133 Identities=13% Similarity=0.152 Sum_probs=119.8
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEe
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAH 764 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~ 764 (926)
+...+|. ++|+|..+++++++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..
T Consensus 8 ~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~G~~~~~~~ 79 (237)
T 3fx3_A 8 AQKAIAR---NSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTP-----TGSEAVVSV 79 (237)
T ss_dssp HHHHHHT---TSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECT-----TSCEEEEEE
T ss_pred HHHHHHh---CCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECC-----CCCEEEEEE
Confidence 4567888 99999999999999999999999999999999999999999999999999998764 488999999
Q ss_pred cCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 765 LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 765 l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
++|||+|||..+.. . .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+.
T Consensus 80 ~~~G~~~G~~~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 140 (237)
T 3fx3_A 80 FTRGESFGEAVALR---N------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGHLH 140 (237)
T ss_dssp EETTEEECHHHHHH---T------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred eCCCCEechHHHhc---C------CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 99999999997652 2 2778999999999999999999999999999999888777666543
No 29
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.64 E-value=1.3e-15 Score=159.08 Aligned_cols=133 Identities=25% Similarity=0.384 Sum_probs=119.0
Q ss_pred HHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecC
Q 002414 687 RKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLG 766 (926)
Q Consensus 687 ~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~ 766 (926)
...|. ++|+|..+++++++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..++
T Consensus 5 ~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~ 76 (227)
T 3d0s_A 5 DEILA---RAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAP-----DGRENLLTIMG 76 (227)
T ss_dssp HHHHT---TSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECT-----TSCEEEEEEEC
T ss_pred HHHHh---cChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECC-----CCcEEEEEEec
Confidence 45677 99999999999999999999999999999999999999999999999999998764 48899999999
Q ss_pred CCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 002414 767 TGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQ 836 (926)
Q Consensus 767 ~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~ 836 (926)
|||+|||..+. +. .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+...
T Consensus 77 ~G~~~G~~~~~---~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 137 (227)
T 3d0s_A 77 PSDMFGELSIF---DP------GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRT 137 (227)
T ss_dssp TTCEESCHHHH---SC------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeeHHHc---CC------CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 99999999765 22 278899999999999999999999999999999988887766655433
No 30
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.64 E-value=1.4e-15 Score=156.25 Aligned_cols=133 Identities=23% Similarity=0.305 Sum_probs=111.6
Q ss_pred cchhHHHHHhhhhcc--CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCC
Q 002414 680 PDFRLAFRKMLMTDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757 (926)
Q Consensus 680 pd~~~~i~~~L~~~l--~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g 757 (926)
++++.++..++...+ ++|+|.+++++.++.++..++...|++|++|+++||+++.+|||.+|.|+++..+ |
T Consensus 59 ~~L~~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-------g 131 (202)
T 3bpz_A 59 GPLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-------N 131 (202)
T ss_dssp HHHHHHHHHHHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-------S
T ss_pred HHHHHHHHHHHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-------C
Confidence 456666655444333 9999999999999999999999999999999999999999999999999997432 3
Q ss_pred CeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 758 ~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
++. .+++||+|||..+... .+++++|+|+++|+++.|++++|..++.++|.+...+.+...+
T Consensus 132 ~~~---~l~~G~~fGe~~~~~~---------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 132 KEM---KLSDGSYFGEICLLTR---------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp CCE---EEETTCEECHHHHHHC---------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred eEE---EEcCCCEeccHHHhcC---------CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 333 5899999999865522 2779999999999999999999999999999988777665444
No 31
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.64 E-value=5e-15 Score=150.14 Aligned_cols=135 Identities=20% Similarity=0.270 Sum_probs=114.0
Q ss_pred HHHHHhcCChhH----HHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEE
Q 002414 439 VENLLNNLPSDL----KRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLW 514 (926)
Q Consensus 439 e~~ll~~Lp~~L----r~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~ 514 (926)
+..+.+.++|++ +.+...+...++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445555555553 3444555567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEee-CCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 515 SATMV-GGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 515 v~~~~-~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++..+ ++... .+..+++|++||+.+++ ... ++.++++|.++|+++.|++++|.+++.++
T Consensus 93 v~~~~~~g~~~--~~~~~~~G~~fGe~~~l---~~~------~~~~~v~A~~~~~v~~i~~~~~~~l~~~~ 152 (187)
T 3gyd_A 93 VIKDIPNKGIQ--TIAKVGAGAIIGEMSMI---DGM------PRSASCVASLPTDFAVLSRDALYQLLANM 152 (187)
T ss_dssp EEEEETTTEEE--EEEEEETTCEESHHHHH---HCC------CCSSEEEEEEEEEEEEEEHHHHHHHHHHC
T ss_pred EEEECCCCCeE--EEEEccCCCeeeeHHHh---CCC------CeeEEEEECCCeEEEEEcHHHHHHHHHHC
Confidence 99875 33332 47899999999999874 222 37899999999999999999999999999
No 32
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.64 E-value=1.5e-15 Score=145.78 Aligned_cols=127 Identities=20% Similarity=0.380 Sum_probs=104.8
Q ss_pred CCCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCC
Q 002414 677 PAEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTL 756 (926)
Q Consensus 677 p~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~ 756 (926)
+..++-...+..+|. ++|+|+.++++.++.++..++.+.|++|++|+++||+++.+|||++|.|++.. +
T Consensus 12 ~k~~~~~~~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~------- 80 (139)
T 3ocp_A 12 PKSPQSKDLIKEAIL---DNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-E------- 80 (139)
T ss_dssp CCCHHHHHHHHHHHH---HCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-T-------
T ss_pred CCCHHHHHHHHHHHh---cCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-C-------
Confidence 334444556788888 99999999999999999999999999999999999999999999999999953 1
Q ss_pred CCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHH
Q 002414 757 GGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKL 825 (926)
Q Consensus 757 g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~ 825 (926)
| ..+..+++|++|||..+... .++.++++|+++|+++.|++++|.+++.++|.+..++
T Consensus 81 g--~~~~~~~~G~~fGe~~~l~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 81 G--VKLCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp T--EEEEEECTTCEESCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred C--EEEEEeCCCCEeccHHHHCC---------CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 3 27889999999999975522 2778999999999999999999999999999887653
No 33
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.63 E-value=2.9e-15 Score=147.15 Aligned_cols=133 Identities=21% Similarity=0.302 Sum_probs=111.8
Q ss_pred cchhHHHHHhhhhcc--CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCC
Q 002414 680 PDFRLAFRKMLMTDF--KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLG 757 (926)
Q Consensus 680 pd~~~~i~~~L~~~l--~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g 757 (926)
++++.++...+...+ ++|+|++++++.++.++..++.+.|++|++|+++||+++++|+|++|.|+++..
T Consensus 14 ~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--------- 84 (160)
T 4f8a_A 14 KDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD--------- 84 (160)
T ss_dssp -CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET---------
T ss_pred HHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC---------
Confidence 345555444333222 999999999999999999999999999999999999999999999999999852
Q ss_pred CeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 002414 758 GFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHT 829 (926)
Q Consensus 758 ~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~ 829 (926)
+..+..++|||+|||..+. .. ...++.++++|+++|+++.|++++|..++.++|.+....++..
T Consensus 85 -~~~~~~~~~G~~fG~~~~~---~~----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 -DEVVAILGKGDVFGDVFWK---EA----TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -TEEEEEEETTCEEECCTTT---CS----SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -CEEEEEecCCCEeCcHHHh---cC----cccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2378899999999998654 11 0027889999999999999999999999999999998877664
No 34
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.63 E-value=6.3e-15 Score=154.09 Aligned_cols=132 Identities=17% Similarity=0.225 Sum_probs=107.2
Q ss_pred HHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecC
Q 002414 687 RKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLG 766 (926)
Q Consensus 687 ~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~ 766 (926)
...++ +.|+|..+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..++
T Consensus 10 ~~~lr---~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~G~~~~~~~~~ 81 (230)
T 3iwz_A 10 TTTVR---NATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEED-----DDRELVLGYFG 81 (230)
T ss_dssp ---------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECT-----TSCEEEEEEEC
T ss_pred hhhhh---hcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECC-----CCCEEEEEEec
Confidence 34566 89999999999999999999999999999999999999999999999999998764 48899999999
Q ss_pred CCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHc-----HHHHHHHHHHHHHHHH
Q 002414 767 TGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKS-----RRLRSKLLRHTYRFYS 834 (926)
Q Consensus 767 ~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~-----p~l~~~~l~~~~r~~s 834 (926)
|||+|||..+. ... +++..+++|+++|+++.|++++|..++.++ |.+...+++...+.+.
T Consensus 82 ~g~~~G~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~ 146 (230)
T 3iwz_A 82 SGEFVGEMGLF---IES-----DTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSKRLL 146 (230)
T ss_dssp TTCEESCGGGT---SCC-----SBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEehhhh---cCC-----CCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHH
Confidence 99999999765 211 367899999999999999999999999999 9888877776665443
No 35
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.63 E-value=3.4e-15 Score=151.97 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=114.1
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~FG 538 (926)
..++++++.|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|+.. .+..+++|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~--~~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQ--TTQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEE--EEEEccCCcEEe
Confidence 456788899999999999999999999999999999999999999999999999999864 33332 478999999999
Q ss_pred hh-hhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHHHhhchhhHhHHHHHHHHHHH
Q 002414 539 EE-LISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAFRVYSHQWRTWAACSIQAAWR 617 (926)
Q Consensus 539 e~-~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f~~~s~~~~~~~~~~~q~~~~ 617 (926)
|. +++ +.. ++.++++|+++|+++.|++++|.+++.++ |.+...+. ..+.....
T Consensus 84 e~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~------p~~~~~~~-----------~~~~~~l~ 137 (194)
T 3dn7_A 84 DYMAFQ---KQQ------PADFYIQSVENCELLSITYTEQENLFERI------PALERYFR-----------LVYQKSFA 137 (194)
T ss_dssp CHHHHH---HTC------BCSSEEEESSCEEEEEEEHHHHHHHHHHC------TTHHHHHH-----------HHHHHHHH
T ss_pred ehHHHh---cCC------CCceEEEEECCEEEEEEeHHHHHHHHHhC------HHHHHHHH-----------HHHHHHHH
Confidence 87 543 222 37899999999999999999999999999 55444333 33444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCC
Q 002414 618 RYKRRNLEEFLNAEENRLQGEWAAGG 643 (926)
Q Consensus 618 ~~~~~~~~~~l~~~e~r~~~~~~~~~ 643 (926)
...++........+++|+...+...+
T Consensus 138 ~~~~~~~~l~~~~~~~Rl~~~L~~~~ 163 (194)
T 3dn7_A 138 AAQLRSKFQHMYSKEEQYHNFSSRFP 163 (194)
T ss_dssp HHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHCh
Confidence 55555666666777777776655443
No 36
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.1e-15 Score=159.50 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=119.5
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEe
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAH 764 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~ 764 (926)
++..+|. ++|+|+++++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..
T Consensus 6 ~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~G~~~~~~~ 77 (227)
T 3dkw_A 6 VHQQLLQ---SHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTP-----EGQEKILEV 77 (227)
T ss_dssp SSHHHHT---TSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCG-----GGCCBCCCE
T ss_pred hHHHHHh---cChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECC-----CCCEEEEEE
Confidence 4556788 99999999999999999999999999999999999999999999999999997764 378889999
Q ss_pred cCCCCeehhhhhhhccCCCCCCCCCC-CccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 002414 765 LGTGDLCGEELLTWALDPQSSFRPPN-STRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQ 836 (926)
Q Consensus 765 l~~Gd~fGE~~L~~~l~~~s~~~~~~-~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~ 836 (926)
++||++|||..+. ... | +..+++|+++|+++.|++++|..++.++|.+....++...+.+...
T Consensus 78 ~~~g~~~G~~~~~---~~~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 141 (227)
T 3dkw_A 78 TNERNTFAEAMMF---MDT------PNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQR 141 (227)
T ss_dssp ECTTEEESCTTTT---TTC------SBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEeeeHHhc---CCC------CCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 9999999998654 222 5 7899999999999999999999999999999988887766655443
No 37
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=5.1e-15 Score=155.18 Aligned_cols=134 Identities=14% Similarity=0.207 Sum_probs=114.5
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
.+|+|+.+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..++|||+|||.
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~-----~g~~~~~~~~~~G~~~G~~ 88 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGV-----YGRFHISRIVKPGQFFGMR 88 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC----------CCCEEEEECTTCEESHH
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECC-----CCCEEEEEEeCCCCEeeee
Confidence 67999999999999999999999999999999999999999999999999997764 3788899999999999999
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHHH
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWAA 842 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~ 842 (926)
.+.. . .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+....+....
T Consensus 89 ~~~~---~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~ 147 (232)
T 2gau_A 89 PYFA---E------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVT 147 (232)
T ss_dssp HHHH---T------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhC---C------CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7652 2 267899999999999999999999999999999988888776655444333333
No 38
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.62 E-value=5.5e-15 Score=145.76 Aligned_cols=123 Identities=18% Similarity=0.170 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeE
Q 002414 451 KRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFY 530 (926)
Q Consensus 451 r~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~ 530 (926)
+.+.......++|+++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++...++... .+..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~--~~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGR--CVGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEE--EEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeE--EEEE
Confidence 34444556678999999999999999999999999999999999999999999999999999999985555543 4789
Q ss_pred eCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 531 LSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 531 l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+++|++|||.+++ ... +++++++|.++|+++.|++++|.++++++
T Consensus 106 ~~~G~~fGe~~~~---~~~------~~~~~v~A~~~~~~~~i~~~~~~~l~~~~ 150 (161)
T 3idb_B 106 YDNRGSFGELALM---YNT------PRAATITATSPGALWGLDRVTFRRIIVKN 150 (161)
T ss_dssp EESCCEECGGGGT---CCC------CCSSEEEESSSEEEEEEEHHHHHHHHHHH
T ss_pred cCCCCEechHHHH---cCC------CcccEEEECCCeEEEEEeHHHHHHHHHHC
Confidence 9999999999884 222 37899999999999999999999999999
No 39
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.61 E-value=2.7e-15 Score=157.51 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=117.5
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhh--cceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEE
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIY--LKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNL 762 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~--~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~ 762 (926)
....++. ++|+|+.+++++++.++.. ++.+.|++|++|+++||+++.+|||++|.|+++..+. +|++.++
T Consensus 15 ~~~~~l~---~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~G~~~~l 86 (232)
T 1zyb_A 15 TMFDTLL---QLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAK-----ENIYTVI 86 (232)
T ss_dssp HHHTTGG---GSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECG-----GGSCEEE
T ss_pred HHHHHHh---cCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECC-----CCCEEEE
Confidence 3455677 9999999999999999998 9999999999999999999999999999999998764 4888999
Q ss_pred EecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 763 AHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 763 ~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
..++|||+|||..+. ... +++.++++|+++|+++.|++++|..++.++|.+...+++...+.+
T Consensus 87 ~~~~~G~~fG~~~~~---~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 149 (232)
T 1zyb_A 87 EQIEAPYLIEPQSLF---GMN-----TNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRA 149 (232)
T ss_dssp EEEESSEEECGGGGS---SSC-----CBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred EEccCCCeeeehHHh---CCC-----CCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999765 222 237999999999999999999999999999999988877655543
No 40
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.61 E-value=6e-15 Score=141.68 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=98.7
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeee---eeEeCCCCe
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQS---GFYLSAGDY 536 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~---v~~l~~G~~ 536 (926)
.+.|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+... .. +..+++|++
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~~~~~G~~ 83 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGS-AANSTVCSVVPGAI 83 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------CEEEEECTTCE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCc-eEeeeEEEecCCCE
Confidence 35789999999999999999999999999999999999999999999999999999865432211 13 688999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 537 YGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 537 FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
||+.+++ .+. ++.++++|.++|+++.|++++|.+++.++
T Consensus 84 fG~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 122 (142)
T 3mdp_A 84 FGVSSLI---KPY------HYTSSARATKPVRVVDINGARLREMSENN 122 (142)
T ss_dssp ECGGGSS---TTC------BCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred echHHHc---CCC------CceEEEEECCcEEEEEEeHHHHHHHHHHC
Confidence 9999874 222 37899999999999999999999999999
No 41
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.60 E-value=1.1e-14 Score=140.85 Aligned_cols=114 Identities=25% Similarity=0.270 Sum_probs=101.8
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FG 538 (926)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. +.. ..+..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRE--NMLAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSE--EEEEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcE--EEEEEcCCcCEec
Confidence 4678999999999999999999999999999999999999999999999999999987653 332 2478999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+.+++ ... ++.++++|.++|+++.|++++|.+++.++
T Consensus 82 ~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 118 (149)
T 2pqq_A 82 ELSLF---DPG------PRTATGTALTEVKLLALGHGDLQPWLNVR 118 (149)
T ss_dssp GGGGT---SCE------ECSSEEEESSCEEEEEEEGGGHHHHHHHC
T ss_pred hHHhc---CCC------CcceEEEEccceEEEEEeHHHHHHHHHhC
Confidence 99874 222 37899999999999999999999999999
No 42
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.60 E-value=6.5e-15 Score=140.87 Aligned_cols=124 Identities=26% Similarity=0.371 Sum_probs=109.4
Q ss_pred HHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEec
Q 002414 686 FRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHL 765 (926)
Q Consensus 686 i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l 765 (926)
+..+|. ++|+|..++++.++.++..++.+.|++|++|+++||+++.+|||++|.|+++..+ ...+
T Consensus 9 ~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~------------~~~~ 73 (138)
T 1vp6_A 9 NWQLVA---AVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------------PVEL 73 (138)
T ss_dssp HHHHHT---TCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS------------CEEE
T ss_pred HHHHHH---hChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC------------cceE
Confidence 455677 9999999999999999999999999999999999999999999999999998442 1478
Q ss_pred CCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 766 GTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 766 ~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
+|||+|||..+... .++..+++|+++|+++.|++++|..++.++|.+...+++...+.+
T Consensus 74 ~~G~~~G~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~ 132 (138)
T 1vp6_A 74 GPGAFFGEMALISG---------EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 132 (138)
T ss_dssp CTTCEECHHHHHHC---------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred CCCCEeeehHhccC---------CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 99999999965522 267899999999999999999999999999999988887766643
No 43
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.60 E-value=1.6e-15 Score=145.15 Aligned_cols=124 Identities=50% Similarity=0.847 Sum_probs=102.0
Q ss_pred HHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechh
Q 002414 461 ELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEE 540 (926)
Q Consensus 461 ~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~ 540 (926)
++|+++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|++....+++.....+..+.+|++|||.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 56889999999999999999999999999999999999999999999999999976444444332123399999999999
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 541 LISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 541 ~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++++.++..+..+.|+++++++|.++|+++.|++++|.+++.++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~ 129 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHC
Confidence 86222343321122246899999999999999999999999998
No 44
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.59 E-value=7.5e-15 Score=143.68 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=106.9
Q ss_pred cchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCe
Q 002414 680 PDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGF 759 (926)
Q Consensus 680 pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~ 759 (926)
++-...+...|. ++|+|..++++.++.++..++.+.|++|++|+++||+++++|||++|.|+++.. |.
T Consensus 30 ~~~~~~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--------~~- 97 (154)
T 3pna_A 30 YKTMAALAKAIE---KNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN--------NE- 97 (154)
T ss_dssp HHHHHHHHHHHH---HCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET--------TE-
T ss_pred HHHHHHHHHHHH---hChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEC--------CE-
Confidence 334456777888 999999999999999999999999999999999999999999999999999962 22
Q ss_pred EEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHH
Q 002414 760 FNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSK 824 (926)
Q Consensus 760 ~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~ 824 (926)
.+..+++||+|||..+... .++.++++|+++|+++.|++++|..++.++|.+..+
T Consensus 98 -~~~~~~~G~~fGe~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 98 -WATSVGEGGSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp -EEEEECTTCEECCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred -EEEEecCCCEeeehHhhcC---------CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 6778999999999976522 277899999999999999999999999998876544
No 45
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.59 E-value=2.2e-14 Score=147.66 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=107.4
Q ss_pred ccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhh
Q 002414 697 PLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELL 776 (926)
Q Consensus 697 plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L 776 (926)
+++..+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..++|||+|||..+
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~~g~~~G~~~~ 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDE-----EGKEMILSYLNQGDFIGELGL 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECT-----TCCEEEEEEEETTCEESCTTT
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECC-----CCCEEEEEEcCCCCEeeeHHH
Confidence 567789999999999999999999999999999999999999999999998764 488999999999999999875
Q ss_pred hhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 777 TWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 777 ~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
.. .. +++..+++|+++|+++.|++++|..++.++|.+...+++...+.+.
T Consensus 77 ~~---~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~ 126 (210)
T 3ryp_A 77 FE---EG-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQ 126 (210)
T ss_dssp TS---TT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred hc---CC-----CCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 51 11 3678999999999999999999999999999998888776665443
No 46
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.59 E-value=4.9e-14 Score=145.76 Aligned_cols=111 Identities=25% Similarity=0.402 Sum_probs=97.0
Q ss_pred hcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCeechhh
Q 002414 463 LLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDYYGEEL 541 (926)
Q Consensus 463 L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~FGe~~ 541 (926)
|+++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|+. ..+..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQE--RTLALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCE--EEEEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCE--EEEEEecCCCEEeehh
Confidence 468999999999999999999999999999999999999999999999999999764 3332 2478999999999998
Q ss_pred hhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 542 ISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 542 ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++ ... ++.++++|.++|+++.|++++|.+++.++
T Consensus 79 ~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 112 (216)
T 4ev0_A 79 LL---DEG------ERSASAVAVEDTELLALFREDYLALIRRL 112 (216)
T ss_dssp HH---HCC------BCSSEEEESSSEEEEEEEHHHHHHHHHHC
T ss_pred hc---CCC------CcceEEEEcCCEEEEEEcHHHHHHHHHHC
Confidence 75 222 37899999999999999999999999999
No 47
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=4.8e-14 Score=144.78 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=107.0
Q ss_pred CCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccC
Q 002414 702 LDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALD 781 (926)
Q Consensus 702 l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~ 781 (926)
|++++++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..++|||+|||..+...
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~G~~~~~~~~~~g~~~G~~~~~~~-- 73 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDD-----DGREMIIGYLNSGDFFGELGLFEK-- 73 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECT-----TSCEEEEEEEETTCEESCTTTCC---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECC-----CCCEEEEEEcCCCCCcccHHHhcC--
Confidence 6889999999999999999999999999999999999999999998764 488999999999999999865421
Q ss_pred CCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 002414 782 PQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQ 836 (926)
Q Consensus 782 ~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~ 836 (926)
. ...+|+..+++|+++|+++.|++++|..++.++|.+...+++...+.+...
T Consensus 74 -~--~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~ 125 (207)
T 2oz6_A 74 -E--GSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKT 125 (207)
T ss_dssp -------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred -C--CCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 1 000157899999999999999999999999999999988887766554433
No 48
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.56 E-value=1.7e-14 Score=149.98 Aligned_cols=140 Identities=11% Similarity=0.163 Sum_probs=118.1
Q ss_pred HhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCC
Q 002414 688 KMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGT 767 (926)
Q Consensus 688 ~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~ 767 (926)
.+|. ++|+|..+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++ .+. +|++.++..++|
T Consensus 4 ~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~-----~G~~~~~~~~~~ 74 (220)
T 2fmy_A 4 MRLT---DTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAY-----EDKEFTLAILEA 74 (220)
T ss_dssp TCSC---SSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EEC-----SSCEEEEEEEET
T ss_pred hhhh---cChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECC-----CCCEEEEEEcCC
Confidence 4566 9999999999999999999999999999999999999999999999999995 442 488999999999
Q ss_pred CCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002414 768 GDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQWRTWAACSIQA 847 (926)
Q Consensus 768 Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~~q~ 847 (926)
||+||| ++.++++|+++|+++.|++++|..++.++|.+...+++...+.+....+.........
T Consensus 75 G~~~G~----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (220)
T 2fmy_A 75 GDIFCT----------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGLVFKD 138 (220)
T ss_dssp TCEEES----------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCEeCC----------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999995 4578999999999999999999999999999998888877665544444333333334
Q ss_pred HHHHH
Q 002414 848 AWSQY 852 (926)
Q Consensus 848 ~~~r~ 852 (926)
+-.|+
T Consensus 139 ~~~Rl 143 (220)
T 2fmy_A 139 ARLRL 143 (220)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 49
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.55 E-value=4e-14 Score=137.87 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=103.6
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FG 538 (926)
.++++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. +.. ..+..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE--KILEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-------CCEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCE--EEEEEccCCCeec
Confidence 5789999999999999999999999999999999999999999999999999999986542 222 2478999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHH
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHA 596 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~ 596 (926)
+.+++ .. .+++.++++|.++|+++.|++++|.+++.++ |.+...
T Consensus 89 ~~~~~---~~-----~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------p~~~~~ 132 (154)
T 2z69_A 89 EAMMF---MD-----TPNYVATAQAVVPSQLFRFSNKAYLRQLQDN------TPLALA 132 (154)
T ss_dssp GGGGG---SS-----CSBCSSEEEESSSEEEEEEEHHHHHHHHTTC------HHHHHH
T ss_pred cHhhc---cC-----CCCCceEEEEccceEEEEECHHHHHHHHHHC------hHHHHH
Confidence 99884 21 1237899999999999999999999999999 665553
No 50
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.55 E-value=2.1e-14 Score=148.54 Aligned_cols=126 Identities=13% Similarity=0.234 Sum_probs=104.0
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
.-|+|+.+++.+.+.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..++||++|||.
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~-----~G~~~~~~~~~~G~~~G~~ 77 (213)
T 1o5l_A 3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSE-----NGKTLEIDEIKPVQIIASG 77 (213)
T ss_dssp ----------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECT-----TSCEEEEEEECSSEESSGG
T ss_pred ccccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECC-----CCCEEEEEEecCCCEeeeH
Confidence 34788889999999999999999999999999999999999999999999998764 4889999999999999999
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
.+.. +. +++..+++|+++|+++.|++++|..++.++|.+...+++...+..
T Consensus 78 ~~~~--~~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~ 128 (213)
T 1o5l_A 78 FIFS--SE------PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHF 128 (213)
T ss_dssp GTTS--SS------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHhc--CC------CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 7651 11 267899999999999999999999999999999988887766544
No 51
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.55 E-value=1.6e-13 Score=142.23 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=99.5
Q ss_pred HHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCe--e
Q 002414 461 ELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDY--Y 537 (926)
Q Consensus 461 ~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~--F 537 (926)
++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. |+. ..+..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGRE--ITLYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCE--EEEEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCE--EEEEecCCCCeeeh
Confidence 678999999999999999999999999999999999999999999999999999997643 333 24789999999 7
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 538 GEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 538 Ge~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
|+.+++ ++. ++.++++|.++|+++.|++++|.+++.++
T Consensus 81 g~~~~~---~~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 118 (220)
T 3dv8_A 81 SASCIM---RSI------QFEVTIEAEKDTDLWIIPAEIYKGIMKDS 118 (220)
T ss_dssp GGGGGC---TTC------CCCCEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred hHHHHh---CCC------CCceEEEEeeeeEEEEEEHHHHHHHHHHC
Confidence 898873 332 37899999999999999999999999999
No 52
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.55 E-value=3.4e-14 Score=157.60 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=114.8
Q ss_pred HHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecC
Q 002414 687 RKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLG 766 (926)
Q Consensus 687 ~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~ 766 (926)
...|+ ++|+|+.+++++++.++..++.+.|++|++|+++||+++++|||++|.|+++..+. +|++ ++..++
T Consensus 12 ~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~g~~-~~~~~~ 82 (333)
T 4ava_A 12 VEDLA---GMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGD-----DGVA-IIARAL 82 (333)
T ss_dssp HHHHT---TSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECT-----TCCE-EEEEEC
T ss_pred HHHHh---CCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECC-----CCcE-EEEEec
Confidence 35677 99999999999999999999999999999999999999999999999999998764 2555 889999
Q ss_pred CCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 767 TGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 767 ~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
+|++|||..+... .++++|++|+++|+++.|++++|..++ ++|.+...+++...+...
T Consensus 83 ~G~~fGe~~l~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 83 PGMIVGEIALLRD---------SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp TTCEESHHHHHHT---------CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred CCCEeeHHHhcCC---------CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 9999999976522 278999999999999999999999999 999999888877666544
No 53
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.54 E-value=3.9e-14 Score=138.51 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=101.5
Q ss_pred HHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCe
Q 002414 457 ELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDY 536 (926)
Q Consensus 457 ~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~ 536 (926)
.....+|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||++|.|+++. + +. .+..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~-~~----~~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-N-NE----WATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-T-TE----EEEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-C-CE----EEEEecCCCE
Confidence 4456789999999999999999999999999999999999999999999999999999987 2 33 2688999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 537 YGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 537 FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
||+.+++. .. ++.++++|.++|+++.|++++|.+++.++
T Consensus 108 fGe~~~~~---~~------~~~~~v~A~~~~~~~~i~~~~~~~ll~~~ 146 (154)
T 3pna_A 108 FGELALIY---GT------PRAATVKAKTNVKLWGIDRDSYRRILMGS 146 (154)
T ss_dssp ECCHHHHH---CC------CCSSEEEESSCEEEEEEEHHHHHHHTHHH
T ss_pred eeehHhhc---CC------CcceEEEECcceEEEEEeHHHHHHHHHhC
Confidence 99998852 22 27899999999999999999999999988
No 54
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.54 E-value=5.5e-14 Score=146.75 Aligned_cols=114 Identities=24% Similarity=0.366 Sum_probs=101.8
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FG 538 (926)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. ++. ..+..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRE--NLLTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCE--EEEEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcE--EEEEEecCCCEEe
Confidence 4678999999999999999999999999999999999999999999999999999998653 333 2478999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+.+++ ... ++.++++|.++|+++.|++++|.+++.++
T Consensus 83 ~~~~~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 119 (227)
T 3d0s_A 83 ELSIF---DPG------PRTSSATTITEVRAVSMDRDALRSWIADR 119 (227)
T ss_dssp CHHHH---SCS------CCSSEEEESSCEEEEEEEHHHHHHTTSSC
T ss_pred eHHHc---CCC------CceeEEEEcccEEEEEEeHHHHHHHHHHC
Confidence 99874 222 37899999999999999999999999999
No 55
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.54 E-value=7.9e-14 Score=146.58 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=102.7
Q ss_pred HHHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCee
Q 002414 459 GLELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 459 ~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~F 537 (926)
..++|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|+.. .+..+++|++|
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~ 86 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEA--VVSVFTRGESF 86 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEE--EEEEEETTEEE
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE--EEEEeCCCCEe
Confidence 3578999999999999999999999999999999999999999999999999999999864 33332 47899999999
Q ss_pred chhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 538 GEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 538 Ge~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
|+.+++ +.. ++.++++|.++|+++.|++++|.+++.++
T Consensus 87 G~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 124 (237)
T 3fx3_A 87 GEAVAL---RNT------PYPVSAEAVTPCEVMHIPSPVFVSLMRRD 124 (237)
T ss_dssp CHHHHH---HTC------CCSSEEEESSSEEEEEEEHHHHHHHHHHC
T ss_pred chHHHh---cCC------CCCceEEECCceEEEEEcHHHHHHHHHHC
Confidence 999885 222 27899999999999999999999999999
No 56
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.53 E-value=6e-14 Score=134.12 Aligned_cols=115 Identities=30% Similarity=0.375 Sum_probs=101.8
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ . ..+++|++||+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~------~~~~~G~~~G~ 81 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGE 81 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS--C------EEECTTCEECH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC--c------ceECCCCEeee
Confidence 578999999999999999999999999999999999999999999999999999997643 1 57899999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHH
Q 002414 540 ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAF 597 (926)
Q Consensus 540 ~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f 597 (926)
.+++. .. ++.++++|.++|+++.|++++|.+++.++ |.+...+
T Consensus 82 ~~~~~---~~------~~~~~~~a~~~~~~~~i~~~~~~~l~~~~------p~~~~~~ 124 (138)
T 1vp6_A 82 MALIS---GE------PRSATVSAATTVSLLSLHSADFQMLCSSS------PEIAEIF 124 (138)
T ss_dssp HHHHH---CC------CCSSCEEESSSEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_pred hHhcc---CC------CceeEEEECCCEEEEEECHHHHHHHHHHC------HHHHHHH
Confidence 98752 22 26889999999999999999999999999 6655533
No 57
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.53 E-value=1.8e-13 Score=143.14 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=101.3
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~FG 538 (926)
.++|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+ +|... .+..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRER--VLGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEE--EEEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceE--EEEecCCCCEEe
Confidence 468899999999999999999999999999999999999999999999999999998764 33322 478999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+.+++ ... ++.++++|.++|+++.|++++|.+++.++
T Consensus 83 ~~~~~---~~~------~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 119 (231)
T 3e97_A 83 ETAVL---AHQ------ERSASVRALTPVRTLMLHREHFELILRRH 119 (231)
T ss_dssp TTTTT---CCC------CCCEEEEESSCEEEEEECHHHHHHHHHHC
T ss_pred eHHHh---CCC------CceEEEEECCcEEEEEEeHHHHHHHHHHC
Confidence 99874 222 37899999999999999999999999999
No 58
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.52 E-value=3.2e-14 Score=138.22 Aligned_cols=65 Identities=9% Similarity=0.340 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 002414 334 PQKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEE 398 (926)
Q Consensus 334 ~~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~ 398 (926)
...|..|+||++.|+|||||||++|.|..+++++++++++|++++++++|.+++.+.+...+.++
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999877654433
No 59
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.52 E-value=7.5e-15 Score=140.02 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=104.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcEEEEeC-CCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeee
Q 002414 447 PSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLKPVLYA-EESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSF 525 (926)
Q Consensus 447 p~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~-~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~ 525 (926)
||..|.+.......++|+++++|..++++.+..++..++.+.|+ +|++|+++||+++.+|||++|.|+++..+|..
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~g~~--- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPDGKV--- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSSSCE---
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCCCcE---
Confidence 44455555555557789999999999999999999999999999 99999999999999999999999998644432
Q ss_pred eeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEE-EEcceEEEEEEeHHHHHHHHHHh
Q 002414 526 QSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTV-RAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 526 ~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv-~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
..+++|++||+.+++ ... ++.+++ +|.++|+++.|++++|.+++++.
T Consensus 79 ---~~l~~G~~fG~~~~~---~~~------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 126 (134)
T 2d93_A 79 ---ENLFMGNSFGITPTL---DKQ------YMHGIVRTKVDDCQFVCIAQQDYWRILNHV 126 (134)
T ss_dssp ---EEECTTCEESCCSSS---CCE------ECCSEEEESSSSEEEEEEEHHHHHHHSSCC
T ss_pred ---EEecCCCccChhHhc---CCC------cceeEEEEEecceEEEEEeHHHHHHHHHHH
Confidence 568999999999874 222 266788 99999999999999999998766
No 60
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.52 E-value=3.4e-14 Score=147.89 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=109.5
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
++|+|..+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++ .+. +|++.++..++||++||
T Consensus 4 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~-----~G~~~~~~~~~~G~~fG-- 75 (222)
T 1ft9_A 4 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVG-----EEREISLFYLTSGDMFC-- 75 (222)
T ss_dssp CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEE-----TTEEEEEEEEETTCEEE--
T ss_pred cchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECC-----CCCEEEEEEcCCCCEec--
Confidence 8899999999999999999999999999999999999999999999999997 442 48899999999999999
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhhh
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQW 837 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~~ 837 (926)
. ++.++++|+++|+++.|++++|..++.++|.+...+++...+.+....
T Consensus 76 --~------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~ 124 (222)
T 1ft9_A 76 --M------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRALTSCM 124 (222)
T ss_dssp --S------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred --C------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHH
Confidence 1 678999999999999999999999999999999888877666554433
No 61
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.52 E-value=1.6e-13 Score=146.60 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=105.2
Q ss_pred cCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhc
Q 002414 700 QSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWA 779 (926)
Q Consensus 700 ~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~ 779 (926)
..+++++++.++..++.+.|++|++|+++||+++.+|||++|.|+++..+. +|++.++..++||++|||..+..
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~-----~G~e~~~~~~~~G~~~Ge~~~~~- 128 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDE-----EGKEMILSYLNQGDFIGELGLFE- 128 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECT-----TCCEEEEEEEETTCEESCTTTTS-
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECC-----CCCEEEEEEcCCCCEEeehHHhC-
Confidence 558999999999999999999999999999999999999999999998764 48899999999999999987551
Q ss_pred cCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 002414 780 LDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYS 834 (926)
Q Consensus 780 l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s 834 (926)
.. +++.++++|+++|+++.|++++|..++.++|.+...+++...+.+.
T Consensus 129 --~~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~l~ 176 (260)
T 3kcc_A 129 --EG-----QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQ 176 (260)
T ss_dssp --TT-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred --CC-----CCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 11 3678999999999999999999999999999998888776655443
No 62
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.51 E-value=1.6e-13 Score=149.77 Aligned_cols=130 Identities=18% Similarity=0.295 Sum_probs=111.2
Q ss_pred CCCCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCC
Q 002414 676 KPAEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755 (926)
Q Consensus 676 kp~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~ 755 (926)
.|..++-...+...|. ++|+|+.+++++++.|+..++.+.|++|++|+++||+++.+|||++|.|++...
T Consensus 27 ~~rs~~~~~~i~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~------- 96 (299)
T 3shr_A 27 FTKSERSKDLIKEAIL---DNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKE------- 96 (299)
T ss_dssp CCCCHHHHHHHHHHHH---TCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEET-------
T ss_pred cCCCHHHHHHHHHHHh---hCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEEC-------
Confidence 3334445556778888 999999999999999999999999999999999999999999999999999532
Q ss_pred CCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHH
Q 002414 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLR 827 (926)
Q Consensus 756 ~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~ 827 (926)
| ..+..+++|++|||.++. .. .|+++||+|+++|+++.|++++|..++..+|........
T Consensus 97 -g--~~~~~~~~G~~fGe~~ll---~~------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~ 156 (299)
T 3shr_A 97 -G--VKLCTMGPGKVFGELAIL---YN------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYM 156 (299)
T ss_dssp -T--EEEEEECTTCEESCSGGG---TT------TBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred -C--EEEEEeCCCCeeeHhHHh---cC------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHH
Confidence 2 377899999999999765 22 388999999999999999999999999998865554433
No 63
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=136.45 Aligned_cols=118 Identities=14% Similarity=0.244 Sum_probs=101.1
Q ss_pred cchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeC-CCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCC
Q 002414 680 PDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYE-KKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGG 758 (926)
Q Consensus 680 pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~-~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~ 758 (926)
.+-...+..+|. ++|+|..++++.++.++..++.+.|+ +|++|+++||+++.+|||++|.|+++..+ |+
T Consensus 8 ~~~~~~~~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------g~ 77 (134)
T 2d93_A 8 DDDIEQLLEFMH---QLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPD-------GK 77 (134)
T ss_dssp TTHHHHHHHHHH---HSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSS-------SC
T ss_pred HHHHHHHHHHHh---CCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCC-------Cc
Confidence 333456778888 99999999999999999999999999 99999999999999999999999999522 44
Q ss_pred eEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEE-EEccceEEEEEcHHHHHHHHHHcH
Q 002414 759 FFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTV-VARTEVEAFALTTDDLKAVASKSR 819 (926)
Q Consensus 759 ~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv-~Al~~~e~~~l~~~dl~~l~~~~p 819 (926)
+ ..+++||+|||..+. .. .++..++ +|+++|+++.|++++|..++.+.+
T Consensus 78 ~---~~l~~G~~fG~~~~~---~~------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 78 V---ENLFMGNSFGITPTL---DK------QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp E---EEECTTCEESCCSSS---CC------EECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred E---EEecCCCccChhHhc---CC------CcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 4 558999999998654 22 2667788 999999999999999999887644
No 64
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.50 E-value=3e-13 Score=141.65 Aligned_cols=117 Identities=15% Similarity=0.237 Sum_probs=99.3
Q ss_pred cCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhh
Q 002414 464 LNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELI 542 (926)
Q Consensus 464 ~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~l 542 (926)
.++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. |.. ..+..+++|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~--~~~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRF--HISRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CC--CEEEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEeCCCCEeeeehh
Confidence 367999999999999999999999999999999999999999999999999986532 222 24789999999999987
Q ss_pred hhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHH
Q 002414 543 SWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAF 597 (926)
Q Consensus 543 l~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f 597 (926)
+ ... ++.++++|.++|+++.|++++|.+++.++ |.+...+
T Consensus 91 ~---~~~------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------p~~~~~~ 130 (232)
T 2gau_A 91 F---AEE------TCSSTAIAVENSKVLAIPVEAIEALLKGN------TSFCRYF 130 (232)
T ss_dssp H---HTS------CCSSEEEESSCEEEEEEEHHHHHHHHHHC------HHHHHHH
T ss_pred h---CCC------CcceEEEEecceEEEEEEHHHHHHHHHHC------HHHHHHH
Confidence 5 222 27899999999999999999999999999 6655433
No 65
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.50 E-value=1.5e-13 Score=144.21 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=104.8
Q ss_pred HHHhcCCcccccCCHHHHHHHHhh--cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCe
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSY--LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDY 536 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~--l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~ 536 (926)
...++++|+|..++++.+..++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+ +|... .+..+++|++
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~l~~~~~G~~ 94 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYT--VIEQIEAPYL 94 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCE--EEEEEESSEE
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEE--EEEEccCCCe
Confidence 567899999999999999999998 999999999999999999999999999999998754 23322 4789999999
Q ss_pred echhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHhhHhHhHHHHHHHH
Q 002414 537 YGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSELSRRLCYKQLHHAF 597 (926)
Q Consensus 537 FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~~~~l~~~~l~~~f 597 (926)
||+.+++ .. .+++.++++|.++|+++.|++++|.+++.++ |.+...+
T Consensus 95 fG~~~~~---~~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~------p~~~~~l 141 (232)
T 1zyb_A 95 IEPQSLF---GM-----NTNYASSYVAHTEVHTVCISKAFVLSDLFRY------DIFRLNY 141 (232)
T ss_dssp ECGGGGS---SS-----CCBCSSEEEESSCEEEEEEEHHHHHHTGGGS------HHHHHHH
T ss_pred eeehHHh---CC-----CCCCceEEEEccceEEEEEEHHHHHHHhccC------HHHHHHH
Confidence 9999874 22 1237899999999999999999999999999 6655533
No 66
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=3.3e-13 Score=146.43 Aligned_cols=131 Identities=24% Similarity=0.268 Sum_probs=114.9
Q ss_pred CcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCC
Q 002414 679 EPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGG 758 (926)
Q Consensus 679 ~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~ 758 (926)
.++-...+...|. ++|+|+.+++++++.++..++.+.|++|++|+++||+++.+|+|++|.|+++. + |
T Consensus 30 s~~~~~~i~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~-------g- 97 (291)
T 2qcs_B 30 DYKTMAALAKAIE---KNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-N-------N- 97 (291)
T ss_dssp CHHHHHHHHHHTT---TCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-T-------T-
T ss_pred CHHHHHHHHHHHh---cChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-C-------C-
Confidence 3344557788888 99999999999999999999999999999999999999999999999999996 2 3
Q ss_pred eEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 759 FFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 759 ~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
..+..+++||+|||..+. .. .++.+|++|.++|+++.|++++|..++.++|.+..+.+....+
T Consensus 98 -~~~~~l~~G~~fGe~~l~---~~------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 98 -EWATSVGEGGSFGELALI---YG------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp -EEEEEECTTCEECGGGGT---CC------CBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eEEEEcCCCCccchHHHh---cC------CCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 368899999999998765 22 2789999999999999999999999999999888777665554
No 67
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.49 E-value=1.6e-13 Score=143.05 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=101.2
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FG 538 (926)
.++|+++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+. |+. ..+..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE--KILEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCC--BCCCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEee
Confidence 4789999999999999999999999999999999999999999999999999999987543 332 2468999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+.+++ .. .|.+.++++|.++|+++.|++++|.+++.++
T Consensus 86 ~~~~~---~~-----~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 123 (227)
T 3dkw_A 86 EAMMF---MD-----TPNYVATAQAVVPSQLFRFSNKAYLRQLQDN 123 (227)
T ss_dssp CTTTT---TT-----CSBCSSCEEESSCCEEEEEESHHHHHHHSSC
T ss_pred eHHhc---CC-----CCCCceEEEEcCcEEEEEEeHHHHHHHHHHC
Confidence 99874 21 1236889999999999999999999999999
No 68
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.49 E-value=7.9e-13 Score=138.06 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=90.7
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeec
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FG 538 (926)
...+++.++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+. |+.. .+..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDREL--VLGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEE--EEEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEEE
Confidence 4678899999999999999999999999999999999999999999999999999997653 3332 478999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 539 EELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 539 e~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+.+++ ... +++.++++|.++|+++.|++++|.+++.++
T Consensus 88 ~~~~~---~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 125 (230)
T 3iwz_A 88 EMGLF---IES-----DTREVILRTRTQCELAEISYERLQQLFQTS 125 (230)
T ss_dssp CGGGT---SCC-----SBCCSEEEESSCEEEEEEEHHHHHHHHHTT
T ss_pred ehhhh---cCC-----CCceeEEEEcCcEEEEEEeHHHHHHHHHHh
Confidence 99884 221 237889999999999999999999999876
No 69
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.48 E-value=3.4e-13 Score=154.10 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=114.1
Q ss_pred CcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCC
Q 002414 679 EPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGG 758 (926)
Q Consensus 679 ~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~ 758 (926)
.++-+..+...|. ++|+|+.|+++++..|+..++.+.|++|++|+++||+++.+|||++|.|+++... +|+
T Consensus 136 s~~~~~~i~~~L~---~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~------~G~ 206 (416)
T 3tnp_B 136 TDDQRNRLQEACK---DILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKC------DGV 206 (416)
T ss_dssp CHHHHHHHHHHHT---TSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEC------SSC
T ss_pred CHHHHHHHHHHHh---CCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEec------CCC
Confidence 3344556778888 9999999999999999999999999999999999999999999999999999743 377
Q ss_pred eEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHH
Q 002414 759 FFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKL 825 (926)
Q Consensus 759 ~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~ 825 (926)
+..+..+++|++|||.++. .. .|+.+||+|+++|+++.|++++|..++.++|......
T Consensus 207 ~~~v~~l~~G~~fGe~all---~~------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~ 264 (416)
T 3tnp_B 207 GRCVGNYDNRGSFGELALM---YN------TPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 264 (416)
T ss_dssp EEEEEEEESCCEECGGGGT---SC------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSS
T ss_pred EEEEEEecCCCEEeeHHHh---cC------CCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHH
Confidence 8899999999999999765 22 3789999999999999999999999999988765443
No 70
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.3e-13 Score=145.56 Aligned_cols=125 Identities=19% Similarity=0.233 Sum_probs=108.2
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEe
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAH 764 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~ 764 (926)
.+...|. +.|+|++++++.++.++..++.+.|++|++|+++||+++++|+|++|.|+++.. ++ .+..
T Consensus 4 ~i~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~--------~~--~~~~ 70 (246)
T 3of1_A 4 RLEKSIR---NNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN--------DN--KVNS 70 (246)
T ss_dssp HHHHHHH---TCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEEST--------TS--CCEE
T ss_pred HHHHHHh---cCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEEC--------CE--EEEe
Confidence 4677888 999999999999999999999999999999999999999999999999999852 22 2588
Q ss_pred cCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 765 LGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 765 l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
++||++|||..+... .|+++|++|.++|+++.|++++|..++.++|...........+
T Consensus 71 ~~~g~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (246)
T 3of1_A 71 SGPGSSFGELALMYN---------SPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128 (246)
T ss_dssp ECTTCEECHHHHHHT---------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred cCCCCeeehhHHhcC---------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999999976522 2789999999999999999999999999988766555444433
No 71
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.45 E-value=5.6e-13 Score=138.39 Aligned_cols=106 Identities=12% Similarity=0.183 Sum_probs=96.1
Q ss_pred HHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechh
Q 002414 461 ELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEE 540 (926)
Q Consensus 461 ~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~ 540 (926)
.+|+++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|... .+..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEF--TLAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEE--EEEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEeCC-
Confidence 4688999999999999999999999999999999999999999999999999999644444442 4789999999998
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 541 LISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 541 ~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+ +.++++|.++|+++.|++++|.+++.++
T Consensus 81 ---------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 109 (220)
T 2fmy_A 81 ---------H------TRAFIQAMEDTTILYTDIRNFQNIVVEF 109 (220)
T ss_dssp ---------C------SSSEEEESSSEEEEEEEHHHHHHHHHHC
T ss_pred ---------c------cceEEEEcCcEEEEEEeHHHHHHHHHHC
Confidence 1 5789999999999999999999999999
No 72
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=152.64 Aligned_cols=134 Identities=22% Similarity=0.270 Sum_probs=115.6
Q ss_pred CCCCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCC
Q 002414 676 KPAEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGT 755 (926)
Q Consensus 676 kp~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~ 755 (926)
.|..++-...+...|. +.|+|++|+++++..++..++.+.|++|++|+++||+++++|+|++|.|+++..
T Consensus 118 ~~ks~~~~~~i~~~l~---~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~------- 187 (381)
T 4din_B 118 IPKDYKTMTALAKAIS---KNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVN------- 187 (381)
T ss_dssp CCCCHHHHHHHHHHHT---TCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEET-------
T ss_pred CCCCHHHHHHHHHHHh---CChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEEC-------
Confidence 3444555667888899 999999999999999999999999999999999999999999999999999952
Q ss_pred CCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 756 LGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 756 ~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
|+ .+..+++|++|||.++. .. .|+.+|++|+++|+++.|++++|..++.++|.+..+++....+
T Consensus 188 -~~--~v~~l~~G~~fGe~all---~~------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 188 -GE--WVTNISEGGSFGELALI---YG------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp -TE--EEEEEESSCCBCGGGGT---SC------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Ce--EeeeCCCCCEEEchHHh---cC------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 22 56789999999999765 22 2789999999999999999999999999999887766654444
No 73
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.45 E-value=3.6e-13 Score=142.90 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=109.2
Q ss_pred CCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhh
Q 002414 695 KMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEE 774 (926)
Q Consensus 695 ~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~ 774 (926)
....+..+++++++.++..++.+.|++|++|+++||+++++|+|++|.|+++..+. +|++.++..++||++|||
T Consensus 13 ~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-----~G~~~~~~~~~~G~~~G~- 86 (250)
T 3e6c_C 13 AIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFE-----DGSEKLLYYAGGNSLIGK- 86 (250)
T ss_dssp CSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECT-----TSCEEEEEEECTTCEECC-
T ss_pred hccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECC-----CCCEEEEEEecCCCEEee-
Confidence 33444899999999999999999999999999999999999999999999998764 488999999999999998
Q ss_pred hhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHh
Q 002414 775 LLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQ 835 (926)
Q Consensus 775 ~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~ 835 (926)
.+. . . +..+++|+++|+++.|++++|..++.++|.+...+++...+.+..
T Consensus 87 ~l~----~------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 136 (250)
T 3e6c_C 87 LYP----T------G-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAY 136 (250)
T ss_dssp CSC----C------S-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHHH
T ss_pred ecC----C------C-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 332 1 3 688999999999999999999999999999998888776665543
No 74
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.44 E-value=5.3e-13 Score=147.94 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=101.7
Q ss_pred HHHhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 460 LELLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 460 ~~~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.++|+++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+... .+..+++|++|||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~G~~fGe 89 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA--IIARALPGMIVGE 89 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE--EEEEECTTCEESH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE--EEEEecCCCEeeH
Confidence 47889999999999999999999999999999999999999999999999999999986544332 3789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 540 ELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 540 ~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.+++. .. +++++++|+++|+++.|++++|.+++ ++
T Consensus 90 ~~l~~---~~------~~~~~v~A~~~~~~~~i~~~~~~~l~-~~ 124 (333)
T 4ava_A 90 IALLR---DS------PRSATVTTIEPLTGWTGGRGAFATMV-HI 124 (333)
T ss_dssp HHHHH---TC------BCSSEEEESSCEEEEEECHHHHHHHH-HS
T ss_pred HHhcC---CC------CceEEEEEecCEEEEEEcHHHHHHHH-hC
Confidence 98852 22 38899999999999999999999999 88
No 75
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.44 E-value=2.3e-12 Score=132.41 Aligned_cols=108 Identities=20% Similarity=0.234 Sum_probs=91.2
Q ss_pred cccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhh
Q 002414 467 PLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWA 545 (926)
Q Consensus 467 ~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~ 545 (926)
++++.++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+. |+. ..+..+++|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~--~~~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE--MILSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCE--EEEEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEeeeHHHh--
Confidence 466779999999999999999999999999999999999999999999997643 333 247899999999999874
Q ss_pred cCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 546 LDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 546 l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
... +++.++++|.++|+++.|++++|.+++.++
T Consensus 78 -~~~-----~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 110 (210)
T 3ryp_A 78 -EEG-----QERSAWVRAKTACEVAEISYKKFRQLIQVN 110 (210)
T ss_dssp -STT-----CBCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred -cCC-----CCceEEEEECCcEEEEEEcHHHHHHHHHHC
Confidence 221 137899999999999999999999999999
No 76
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.43 E-value=1.5e-12 Score=126.31 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hhHhHHHHHHHHHHH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQI------YLQS----KTIRSEEMRLKGQEI 406 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~~i 406 (926)
|..|+||++.|+|||||||++|.|..+++++++.+++|++++++++++++. +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999987 3332 356666777889999
Q ss_pred HHHHhcCCCCHHHHHH
Q 002414 407 EQWMGFRKLSRDLQQK 422 (926)
Q Consensus 407 ~~~m~~~~lp~~L~~r 422 (926)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999875
No 77
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.42 E-value=4.5e-12 Score=129.97 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=89.8
Q ss_pred CCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCCCC
Q 002414 472 LDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDPNS 550 (926)
Q Consensus 472 l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~ 550 (926)
|+++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+. |.. ..+..+++|++||+.+++ ....
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~--~~~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGRE--MIIGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCE--EEEEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCCcccHHHh---cCCC
Confidence 5789999999999999999999999999999999999999999997653 333 247899999999999874 2210
Q ss_pred CCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 551 SHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 551 ~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
..+++.++++|.++|+++.|++++|.+++.++
T Consensus 76 --~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 107 (207)
T 2oz6_A 76 --SEQERSAWVRAKVECEVAEISYAKFRELSQQD 107 (207)
T ss_dssp ----CBCCSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred --CCCCcceEEEECCcEEEEEECHHHHHHHHHHC
Confidence 00037899999999999999999999999999
No 78
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.42 E-value=2.1e-13 Score=130.14 Aligned_cols=92 Identities=9% Similarity=0.189 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHhcCCCC
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEEMRLKGQEIEQWMGFRKLS 416 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~i~~~m~~~~lp 416 (926)
|..|+||++.|+|||||||++|.|..+++++++++++|++++|+++|.+++.+........+.+...+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 78999999999999999999999999999999999999999999999999998776655544433333333334445666
Q ss_pred HHHHHHHHHHHH
Q 002414 417 RDLQQKLRNYRQ 428 (926)
Q Consensus 417 ~~L~~ri~~y~~ 428 (926)
++....+++|.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 79
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.41 E-value=3.4e-12 Score=134.34 Aligned_cols=123 Identities=17% Similarity=0.225 Sum_probs=102.2
Q ss_pred cCCCHHHHHHHHh--hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhh
Q 002414 700 QSLDAKTLDDICI--YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLT 777 (926)
Q Consensus 700 ~~l~~~~l~~l~~--~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~ 777 (926)
+++++++++.+.. .++.+.|++|++|+++||+++++|||++|.|+++..+. +|++.++..+ |||+|||..+.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~-----~G~e~~~~~~-~G~~~Ge~~~~ 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISE-----NGTIMNLQYY-KGAFVIMSGFI 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECT-----TSCEEEEEEE-ESSEEEESBCT
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECC-----CCCEEEEEEc-CCCEecchhhh
Confidence 4678899998875 59999999999999999999999999999999998764 4888999999 99999998655
Q ss_pred hccCCCCCCCCCC-CccEEEEc-cceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHhh
Q 002414 778 WALDPQSSFRPPN-STRTVVAR-TEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFYSQQ 836 (926)
Q Consensus 778 ~~l~~~s~~~~~~-~~~tv~Al-~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~s~~ 836 (926)
... ++ +..++.|+ ++|+++.|++++|..++.++|.+...+++...+.+...
T Consensus 76 ---~~~-----~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~ 128 (238)
T 2bgc_A 76 ---DTE-----TSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSYS 128 (238)
T ss_dssp ---TTC-----CBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred ---cCC-----CcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 211 11 36788888 59999999999999999999999988887766654433
No 80
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.40 E-value=1.3e-12 Score=135.98 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=94.4
Q ss_pred HhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhh
Q 002414 462 LLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEEL 541 (926)
Q Consensus 462 ~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ 541 (926)
+|+++|+|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++...+|... .+..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~--~~~~~~~G~~fG--~ 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREI--SLFYLTSGDMFC--M 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEE--EEEEEETTCEEE--S
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEE--EEEEcCCCCEec--C
Confidence 367899999999999999999999999999999999999999999999999999744455443 478999999999 1
Q ss_pred hhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 542 ISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 542 ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
++.++++|.++|+++.|++++|.+++.++
T Consensus 77 --------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 105 (222)
T 1ft9_A 77 --------------HSGCLVEATERTEVRFADIRTFEQKLQTC 105 (222)
T ss_dssp --------------CSSCEEEESSCEEEEEECHHHHHHHHHHC
T ss_pred --------------CCCEEEEEccceEEEEEeHHHHHHHHHHC
Confidence 26889999999999999999999999999
No 81
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.40 E-value=2.9e-12 Score=135.37 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=102.0
Q ss_pred HHHHHHHHhhcc---eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhcc
Q 002414 704 AKTLDDICIYLK---PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWAL 780 (926)
Q Consensus 704 ~~~l~~l~~~~~---~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l 780 (926)
++.++.++.... .+.|++|++|+++||+++.+|||++|.|+++..+. +|++.++..++|||+|||..+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~-----~G~~~~l~~~~~g~~~G~~~~~--- 101 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYE-----AGEEITVALLRENSVFGVLSLL--- 101 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECT-----TCCEEEEEEECTTCEESCHHHH---
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECC-----CCCEEEEEEecCCCEEcchHHh---
Confidence 677888888888 99999999999999999999999999999998764 4889999999999999998765
Q ss_pred CCCCCCCCC-CCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 781 DPQSSFRPP-NSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 781 ~~~s~~~~~-~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
... | ++..+++|+++|+++.|++++|..++.++|.+...+++...+.+
T Consensus 102 ~~~-----~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 150 (243)
T 3la7_A 102 TGN-----KSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRI 150 (243)
T ss_dssp SSC-----CSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC-----CCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 221 1 34589999999999999999999999999999988877655544
No 82
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.40 E-value=1.2e-12 Score=122.22 Aligned_cols=60 Identities=10% Similarity=0.347 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
..|..|+||++.|+|||||||++|.|..+++++++.+++|++++++.+|.+++.+.+...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999999986554
No 83
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.39 E-value=2.2e-12 Score=150.10 Aligned_cols=137 Identities=23% Similarity=0.272 Sum_probs=115.9
Q ss_pred CCCCCcchhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCC
Q 002414 675 QKPAEPDFRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGG 754 (926)
Q Consensus 675 ~kp~~pd~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~ 754 (926)
+.+..++-...+...|. ++|+|.++++++++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+.+ |
T Consensus 29 ~~~rt~~~~~~i~~~l~---~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~--g 103 (469)
T 1o7f_A 29 PLERSSEDVDIIFTRLK---GVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS--S 103 (469)
T ss_dssp STTCCHHHHHHHHHHHT---TCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSS--C
T ss_pred hhhCCHHHHHHHHHHHh---CCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCC--C
Confidence 33444444556778888 999999999999999999999999999999999999999999999999999987641 1
Q ss_pred CCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHH
Q 002414 755 TLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLR 827 (926)
Q Consensus 755 ~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~ 827 (926)
.+++..+..++||++|||.. . .. .++++|++|+++|+++.|++++|..++.++|.+...+++
T Consensus 104 -~~~~~~~~~~~~G~~fGe~~-l---~~------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 104 -HQDAVTICTLGIGTAFGESI-L---DN------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp -GGGCEEEEEECTTCEECGGG-G---GT------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred -CCcceEEEEccCCCCcchhh-h---CC------CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 12358999999999999987 4 22 278999999999999999999999999999986655543
No 84
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.38 E-value=2.6e-12 Score=132.74 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=87.9
Q ss_pred CcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCeechhhhhh
Q 002414 466 VPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDYYGEELISW 544 (926)
Q Consensus 466 i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~FGe~~ll~ 544 (926)
-|.|+..++.....++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|+.. .+..+++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTL--EIDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEE--EEEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEeeeHHHh-
Confidence 478888999999999999999999999999999999999999999999998764 33332 47899999999999874
Q ss_pred hcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 545 ALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 545 ~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
... +++.++++|.++|+++.|++++|.+++.++
T Consensus 81 --~~~-----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 113 (213)
T 1o5l_A 81 --SSE-----PRFPVNVVAGENSKILSIPKEVFLDLLMKD 113 (213)
T ss_dssp --SSS-----CBCSSEEEESSSEEEEEEEHHHHHHHHHHC
T ss_pred --cCC-----CCceEEEEEccceEEEEEeHHHHHHHHHHC
Confidence 211 137899999999999999999999999999
No 85
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.37 E-value=8.3e-12 Score=133.31 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=89.4
Q ss_pred cccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcC
Q 002414 469 FQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALD 547 (926)
Q Consensus 469 F~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~ 547 (926)
...++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. |+. ..+..+++|++||+.+++ .
T Consensus 54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e--~~~~~~~~G~~~Ge~~~~---~ 128 (260)
T 3kcc_A 54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKE--MILSYLNQGDFIGELGLF---E 128 (260)
T ss_dssp -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCE--EEEEEEETTCEESCTTTT---S
T ss_pred cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCE--EEEEEcCCCCEEeehHHh---C
Confidence 3558999999999999999999999999999999999999999999997643 333 247899999999999874 2
Q ss_pred CCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 548 PNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 548 ~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.. ++++++++|.++|+++.|++++|.+++.++
T Consensus 129 ~~-----~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~ 160 (260)
T 3kcc_A 129 EG-----QERSAWVRAKTACEVAEISYKKFRQLIQVN 160 (260)
T ss_dssp TT-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred CC-----CCCceEEEECCCeEEEEEcHHHHHHHHHHC
Confidence 21 137899999999999999999999999999
No 86
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.33 E-value=8.4e-12 Score=158.42 Aligned_cols=126 Identities=23% Similarity=0.283 Sum_probs=110.4
Q ss_pred hhHHHHHhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEE
Q 002414 682 FRLAFRKMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFN 761 (926)
Q Consensus 682 ~~~~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~ 761 (926)
=...|...|+ ++++|+.+++.++..||..++...|++|++||+|||+++++|+|++|.|.++..+. ++++.+..
T Consensus 36 dl~~I~~~Lk---~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~---~~~~~~~~ 109 (999)
T 4f7z_A 36 DVDIIFTRLK---GVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET---SSHQDAVT 109 (999)
T ss_dssp HHHHHHHHHT---TCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS---SCTTSCEE
T ss_pred HHHHHHHHHh---CCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC---CCCCCcee
Confidence 3346788899 99999999999999999999999999999999999999999999999999997653 22356788
Q ss_pred EEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHH
Q 002414 762 LAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRS 823 (926)
Q Consensus 762 ~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~ 823 (926)
+..++||+.|||.++.. .||++||+|.++|++++|++++|..+..++|+...
T Consensus 110 v~~l~~G~sFGEall~n----------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 110 ICTLGIGTAFGESILDN----------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp EEEEETTCEECGGGGGT----------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred EEEecCCcchhhhhccC----------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 89999999999944431 27999999999999999999999999999886543
No 87
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.30 E-value=1.6e-11 Score=130.18 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=94.0
Q ss_pred HhcCCcccccCCHHHHHHHHhhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechh
Q 002414 462 LLLNVPLFQNLDAKTLDDICSYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEE 540 (926)
Q Consensus 462 ~L~~i~lF~~l~~~~l~~l~~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~ 540 (926)
++.++..+..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+. |+.. .+..+++|++||+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~--~~~~~~~G~~~G~- 86 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEK--LLYYAGGNSLIGK- 86 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECC-
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEE--EEEEecCCCEEee-
Confidence 34555555899999999999999999999999999999999999999999999997643 3332 4789999999999
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 541 LISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 541 ~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
.+ . .. +.++++|.++|+++.|++++|.+++.++
T Consensus 87 ~l----~------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 119 (250)
T 3e6c_C 87 LY----P------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTD 119 (250)
T ss_dssp CS----C------CS-CCEEEEESSSEEEEEECHHHHHHHHHHC
T ss_pred ec----C------CC-CceEEEEcccEEEEEEcHHHHHHHHHHC
Confidence 33 1 12 5789999999999999999999999999
No 88
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.25 E-value=2.5e-11 Score=116.38 Aligned_cols=59 Identities=12% Similarity=0.416 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKT 393 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 393 (926)
..|..|+||++.|+|||||||++|.|..+++++++.+++|+++++++++.+++.+....
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~ 97 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 97 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999998875544
No 89
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.24 E-value=3.4e-11 Score=122.44 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=82.6
Q ss_pred EEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEE
Q 002414 717 VLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVV 796 (926)
Q Consensus 717 ~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~ 796 (926)
+.|++|++|+++||+++.+|+|++|.|+++..+. +|++.++..++|||+||| .+. +. .++.++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~-----~g~~~~~~~~~~G~~~Ge-~~~---~~------~~~~~~~~ 66 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLP-----DGRLITLRHVLPGDYFGE-EAL---EG------KAYRYTAE 66 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECT-----TSCEEEEEEECTTCEECG-GGG---TC------SBCSSEEE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECC-----CCCEEEEEEecCCCEech-hhh---CC------CCceeEEE
Confidence 6799999999999999999999999999998764 488899999999999999 765 22 27889999
Q ss_pred EccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 002414 797 ARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRFY 833 (926)
Q Consensus 797 Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~~ 833 (926)
|+++|+++.|++++|. |.+...+++...+.+
T Consensus 67 A~~~~~v~~i~~~~~~------p~~~~~~~~~l~~~l 97 (195)
T 3b02_A 67 AMTEAVVQGLEPRAMD------HEALHRVARNLARQM 97 (195)
T ss_dssp ESSSEEEEEECGGGCC------HHHHHHHHHHHHHHH
T ss_pred ECCcEEEEEEcHHHcC------HHHHHHHHHHHHHHH
Confidence 9999999999999998 777776666555443
No 90
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.21 E-value=2.3e-10 Score=120.22 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=83.9
Q ss_pred ccCCHHHHHHHHh--hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhc
Q 002414 470 QNLDAKTLDDICS--YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWAL 546 (926)
Q Consensus 470 ~~l~~~~l~~l~~--~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l 546 (926)
++++++.+..++. .++.+.|++|++|+++||+++.+|||.+|.|+++..+. |+.. .+..+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~--~~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIM--NLQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEE--EEEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEE--EEEEc-CCCEecchhhh---
Confidence 3678888888885 59999999999999999999999999999999987643 3332 36778 99999999874
Q ss_pred CCCCCCCCCCcceEEEEc-ceEEEEEEeHHHHHHHHHHh
Q 002414 547 DPNSSHYLPISSRTVRAA-TEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 547 ~~~~~~~~~~r~~tv~A~-t~~~ll~L~~~~f~~ll~~~ 584 (926)
...+ +++..++.|+ ++|+++.|++++|.+++.++
T Consensus 76 ~~~~----~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~ 110 (238)
T 2bgc_A 76 DTET----SVGYYNLEVISEQATAYVIKINELKELLSKN 110 (238)
T ss_dssp TTCC----BSCCCEEEECSSEEEEEEEEHHHHHHHHHHC
T ss_pred cCCC----cCcceeEEEEEcceEEEEEeHHHHHHHHHHC
Confidence 2221 0014667777 59999999999999999999
No 91
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.20 E-value=2.1e-10 Score=121.01 Aligned_cols=102 Identities=15% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHHhhcE---EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCCC
Q 002414 474 AKTLDDICSYLK---PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDPN 549 (926)
Q Consensus 474 ~~~l~~l~~~l~---~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~~ 549 (926)
+++++.++.... .+.|++|++|+++|++++.+|||.+|.|+++..+. |+.. .+..+++|++||+.+++ ...
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~--~l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEI--TVALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEE--EEEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEEcchHHh---CCC
Confidence 678888888888 99999999999999999999999999999997653 3332 47899999999999874 222
Q ss_pred CCCCCCCcceEEEEcceEEEEEEeHHHHHHHHHHh
Q 002414 550 SSHYLPISSRTVRAATEVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 550 ~~~~~~~r~~tv~A~t~~~ll~L~~~~f~~ll~~~ 584 (926)
+ ..+.++++|+++|+++.|++++|.+++.++
T Consensus 105 ~----~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~ 135 (243)
T 3la7_A 105 K----SDRFYHAVAFTPVELLSAPIEQVEQALKEN 135 (243)
T ss_dssp C----SBCCEEEEESSSEEEEEEEHHHHHHHHTTC
T ss_pred C----CcceEEEEEccceEEEEEcHHHHHHHHHHC
Confidence 1 024589999999999999999999999999
No 92
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.18 E-value=1.8e-12 Score=145.00 Aligned_cols=121 Identities=26% Similarity=0.402 Sum_probs=0.4
Q ss_pred HhhhhccCCccccCCCHHHHHHHHhhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCC
Q 002414 688 KMLMTDFKMPLFQSLDAKTLDDICIYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGT 767 (926)
Q Consensus 688 ~~L~~~l~~plF~~l~~~~l~~l~~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~ 767 (926)
+.+. +.|+|++++++.++.++..++.+.+++|++|++|||+++++|+|.+|.++++..+ ...+++
T Consensus 228 ~~l~---~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------------~~~l~~ 292 (355)
T 3beh_A 228 QLVA---AVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------------PVELGP 292 (355)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhh---cccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC------------eeEECC
Confidence 3566 8999999999999999999999999999999999999999999999999998542 247999
Q ss_pred CCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHH
Q 002414 768 GDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYRF 832 (926)
Q Consensus 768 Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r~ 832 (926)
||+|||..+. .. .|+..+++|.++|+++.|++++|.++++++|++.....+...+.
T Consensus 293 G~~fGe~~~l---~~------~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r 348 (355)
T 3beh_A 293 GAFFGEMALI---SG------EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 348 (355)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCEEeehHHh---CC------CCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 9999999665 22 27789999999999999999999999999999988877665543
No 93
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.18 E-value=6.2e-11 Score=143.10 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=102.7
Q ss_pred HHHHhhhhccCCccccCCCHHHHHHHHhhcc-eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEE
Q 002414 685 AFRKMLMTDFKMPLFQSLDAKTLDDICIYLK-PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLA 763 (926)
Q Consensus 685 ~i~~~L~~~l~~plF~~l~~~~l~~l~~~~~-~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~ 763 (926)
.+...|. ++|+|.++++++++.++..+. .+.|++|++|+++||+++.+|||++|.|+++.. |+ .++.
T Consensus 29 ~l~~~L~---~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~--------g~-~il~ 96 (694)
T 3cf6_E 29 IIYDELL---HIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY--------GK-GVVC 96 (694)
T ss_dssp HHHHHHT---TCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET--------TT-EEEE
T ss_pred HHHHHHH---cChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe--------CC-EEEE
Confidence 4666777 999999999999999999998 789999999999999999999999999999964 22 4789
Q ss_pred ecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEcc-ceEEEEEcHHHHHHHHHHcHHH
Q 002414 764 HLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVART-EVEAFALTTDDLKAVASKSRRL 821 (926)
Q Consensus 764 ~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~-~~e~~~l~~~dl~~l~~~~p~l 821 (926)
.+++||+|||..+... .++.++|+|++ +|+++.|++++|..++.++|.+
T Consensus 97 ~l~~Gd~fGe~al~~~---------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 97 TLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp EEETTCEECHHHHHHT---------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred EeCCCCEeehHHHhCC---------CCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 9999999999876522 26799999999 5999999999999999988755
No 94
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.16 E-value=9.6e-11 Score=141.46 Aligned_cols=130 Identities=10% Similarity=0.154 Sum_probs=109.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHhcCCcccccCCHHHHHHHHhhcE-EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEe
Q 002414 440 ENLLNNLPSDLKRNIKSELGLELLLNVPLFQNLDAKTLDDICSYLK-PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATM 518 (926)
Q Consensus 440 ~~ll~~Lp~~Lr~~i~~~l~~~~L~~i~lF~~l~~~~l~~l~~~l~-~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~ 518 (926)
..++... +..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++||+++.+|||++|.|+++..
T Consensus 12 r~iL~k~-p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKP-PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSC-GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCC-hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 3455444 44455555555678999999999999999999999998 689999999999999999999999999999875
Q ss_pred eCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc-eEEEEEEeHHHHHHHHHHh
Q 002414 519 VGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAAT-EVEAFVLMSDNLRAVTSEL 584 (926)
Q Consensus 519 ~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t-~~~ll~L~~~~f~~ll~~~ 584 (926)
|.. .+..+++|++|||.+++. .. ++.++++|.+ +|+++.|++++|.+++.++
T Consensus 91 -g~~----il~~l~~Gd~fGe~al~~---~~------~~~~tv~A~edd~~ll~I~~~~f~~ll~~~ 143 (694)
T 3cf6_E 91 -GKG----VVCTLHEGDDFGKLALVN---DA------PRAASIVLREDNCHFLRVDKEDFNRILRDV 143 (694)
T ss_dssp -TTE----EEEEEETTCEECHHHHHH---TC------BCSSEEEECSSSEEEEEEEHHHHHHHTTTT
T ss_pred -CCE----EEEEeCCCCEeehHHHhC---CC------CceEEEEEeeCceEEEEEeHHHHHHHHHHC
Confidence 332 379999999999998852 22 3789999999 5999999999999999987
No 95
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.15 E-value=1.3e-10 Score=118.78 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=81.0
Q ss_pred HHhhcceEEeCCCCEEEccCCCC--CeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCC
Q 002414 710 ICIYLKPVLYEKKSWIFREGRPV--DKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFR 787 (926)
Q Consensus 710 l~~~~~~~~~~~g~~I~~eGd~~--~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~ 787 (926)
|+..++.+.|++|++|+++||++ +++|+|++|.|+++..+. +|++.++..++|||+||| .+.. .
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~-----~G~~~~~~~~~~g~~~G~-~~l~---~----- 66 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDE-----EGNALTLRLVRPGGFFGE-EALF---G----- 66 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECT-----TSCEEEEEEECTTCEECT-HHHH---T-----
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECC-----CCcEEEEEEecCCCEeee-hhcC---C-----
Confidence 34567889999999999999999 999999999999998764 488999999999999999 5431 1
Q ss_pred CCCCccEEEEccceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 002414 788 PPNSTRTVVARTEVEAFALTTDDLKAVASKSRRLRSKLLRHTYR 831 (926)
Q Consensus 788 ~~~~~~tv~Al~~~e~~~l~~~dl~~l~~~~p~l~~~~l~~~~r 831 (926)
.++..+++|+++|+++.| +++|. |.+...+++...+
T Consensus 67 -~~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 67 -QERIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp -CCBCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred -CCcceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH
Confidence 267899999999999999 98886 7666666655444
No 96
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.09 E-value=2.2e-10 Score=123.88 Aligned_cols=61 Identities=10% Similarity=-0.066 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHhhhccCCC-ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 334 PQKFSHCFLWGLQNLSCFGQN-LQT-SSYFWE----NFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 334 ~~~Y~~s~ywa~~tlttvGyG-di~-p~~~~E----~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
+..+..|+||+++|+||+||| |+. |.+... ..+.+++++.|.++.+..+|.+.+.++....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455779999999999999999 985 665533 8899999999999999999998887765443
No 97
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.07 E-value=8.8e-10 Score=101.35 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRS 396 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~ 396 (926)
|..|+||++.|+|||||||++|.+..+++++++.+++|+.++++.++.+++.++......
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~ 109 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILS 109 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999999999999999999999999999886554433
No 98
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.04 E-value=5.8e-11 Score=107.37 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
.|..|+||++.|+|||||||++|.+..+++++++.+++|+.++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999988876544
No 99
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.01 E-value=1.8e-09 Score=96.16 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSK 392 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 392 (926)
|..|+||++.|+|||||||+.|.+..+++++++.+++|..+++++++.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 77899999999999999999999999999999999999999999999999887643
No 100
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.98 E-value=2.7e-09 Score=108.20 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=68.4
Q ss_pred EEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeC-CeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcc
Q 002414 487 VLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVG-GRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAAT 565 (926)
Q Consensus 487 ~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~-~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t 565 (926)
+.|++|++|+++||+++.+|+|.+|.|+++..+. +... .+..+++|++||| +++ +.. ++.++++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~--~~~~~~~G~~~Ge-~~~---~~~------~~~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLI--TLRHVLPGDYFGE-EAL---EGK------AYRYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEE--EEEEECTTCEECG-GGG---TCS------BCSSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEE--EEEEecCCCEech-hhh---CCC------CceeEEEECC
Confidence 5799999999999999999999999999987643 3332 4789999999999 874 322 3789999999
Q ss_pred eEEEEEEeHHHHH
Q 002414 566 EVEAFVLMSDNLR 578 (926)
Q Consensus 566 ~~~ll~L~~~~f~ 578 (926)
+|+++.|++++|.
T Consensus 70 ~~~v~~i~~~~~~ 82 (195)
T 3b02_A 70 EAVVQGLEPRAMD 82 (195)
T ss_dssp SEEEEEECGGGCC
T ss_pred cEEEEEEcHHHcC
Confidence 9999999999997
No 101
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.91 E-value=2.3e-09 Score=92.41 Aligned_cols=53 Identities=11% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYL 389 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 389 (926)
|..|+||++.|+|||||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999999999999998875
No 102
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.83 E-value=2.1e-10 Score=113.26 Aligned_cols=64 Identities=11% Similarity=0.394 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTIRSEE 398 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~ 398 (926)
..|..|+||++.|+|||||||++|.|..+++++++.+++|++++++++|.+++.+.....+..+
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999988766544433
No 103
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.80 E-value=1.5e-08 Score=103.28 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=68.5
Q ss_pred HHhhcEEEEeCCCCEEEccCCcc--CeEEEEEeeEEEEEEee-CCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCC
Q 002414 480 ICSYLKPVLYAEESHIVLEGDRI--DGMLFVMRGKLWSATMV-GGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPI 556 (926)
Q Consensus 480 l~~~l~~~~~~~ge~I~~eGd~~--~~ly~I~~G~v~v~~~~-~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~ 556 (926)
+...++.+.|++|++|+++||++ +.+|+|.+|.|+++..+ +|+.. .+..+++|++||+ +++. .. +
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~--~~~~~~~g~~~G~-~~l~---~~------~ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNAL--TLRLVRPGGFFGE-EALF---GQ------E 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEE--EEEEECTTCEECT-HHHH---TC------C
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEE--EEEEecCCCEeee-hhcC---CC------C
Confidence 34567889999999999999999 99999999999998764 33332 4789999999999 6642 22 2
Q ss_pred cceEEEEcceEEEEEEeHHHHH
Q 002414 557 SSRTVRAATEVEAFVLMSDNLR 578 (926)
Q Consensus 557 r~~tv~A~t~~~ll~L~~~~f~ 578 (926)
+.++++|+++|+++.| +++|.
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC
T ss_pred cceEEEEcccEEEEEE-hHhcC
Confidence 7889999999999999 98875
No 104
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.73 E-value=2e-08 Score=108.23 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQ 390 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 390 (926)
..|..|+||++.|+|||||||++|.+...++++++.+++|++++|+++|.+.+.+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999998887764
No 105
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.66 E-value=1.4e-08 Score=110.51 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSK 392 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 392 (926)
.|..|+||++.|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999998877644
No 106
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.62 E-value=8.5e-08 Score=102.83 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSK 392 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 392 (926)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999988653
No 107
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.47 E-value=1.5e-07 Score=102.05 Aligned_cols=57 Identities=14% Similarity=0.268 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSK 392 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 392 (926)
.|..|+||++.|||||||||+.|.+...++++++.+++|++++|+++|.+.+.+...
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999877643
No 108
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.41 E-value=9.1e-07 Score=96.01 Aligned_cols=59 Identities=10% Similarity=0.271 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSS--YFWENFFAIVITISGLVFFLYLIGNIQIYLQSKTI 394 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~--~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 394 (926)
.+..++||++.|+|||||||+.|+ +..-++++++.+++|+++.|+.+|.+.+-+..-..
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 356899999999999999999997 68899999999999999999999988777665443
No 109
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.30 E-value=1.8e-06 Score=102.54 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGN-IQIYLQ 390 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~-i~~il~ 390 (926)
|+.|+||++.|||||||||++|.|..+++++++++++|++++++.++. +.+.+.
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999988 555543
No 110
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.29 E-value=2e-06 Score=93.41 Aligned_cols=59 Identities=19% Similarity=0.385 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhhhccCCCccccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002414 335 QKFSHCFLWGLQNLSCFGQNLQTSS--YFWENFFAIVITISGLVFFLYLIGNIQIYLQSKT 393 (926)
Q Consensus 335 ~~Y~~s~ywa~~tlttvGyGdi~p~--~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 393 (926)
..+..++||++.|+|||||||+.|+ +...++++++.+++|+++.|+.+|.+.+-+..-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3477899999999999999999864 8899999999999999999999998877665443
No 111
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.28 E-value=1.1e-06 Score=92.77 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQS 391 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 391 (926)
.|..|+||+++|+|||||||++|.|...++++++.+++|+.+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999998876543
No 112
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.25 E-value=4.4e-07 Score=97.31 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWEN------FFAIVITISGLVFFLYLIGNIQIYLQSKTIRS 396 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~------~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~ 396 (926)
|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+.....+.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988886 59999999999999999999999887665443
No 113
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.16 E-value=1.3e-05 Score=83.26 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEecc
Q 002414 80 WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEY 159 (926)
Q Consensus 80 Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d 159 (926)
++.++.++++.+++..-+.-+ ..+......+..+|.++-++|.+|+++++... |
T Consensus 14 f~~~i~~~I~ln~i~l~~~~~-----------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~----------~----- 67 (229)
T 4dxw_A 14 FQFTVVSIIILNAVLIGATTY-----------ELDPLFLETIHLLDYGITIFFVIEILIRFIGE----------K----- 67 (229)
T ss_dssp HHHHHHHHHHHHHHSTTTCCS-----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHccC-----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------C-----
Confidence 788888888888876554421 11223345678899999999999999998642 1
Q ss_pred HHHHHHHHhhh-hhhhHHHhhccH
Q 002414 160 AQEITRKYLLF-FLPIDLLAILPL 182 (926)
Q Consensus 160 ~~~Ia~~Yl~~-~F~iDlls~lP~ 182 (926)
-.++|+++ |=++|++.++|.
T Consensus 68 ---~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 ---QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ----------CHHHHHHHHHHHHT
T ss_pred ---chhHHhcCCcHHHHHHHHHHH
Confidence 04579988 889998877764
No 114
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.13 E-value=1.6e-06 Score=91.51 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhhhccCCCccccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFW-------ENFFAIVITISGLVFFLYLIGNIQIYLQSK 392 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~-------E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 392 (926)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|+.+++++++.++++++.-
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999885 499999999999999999999998877543
No 115
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.96 E-value=5.8e-07 Score=99.39 Aligned_cols=56 Identities=13% Similarity=0.331 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 337 FSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQSK 392 (926)
Q Consensus 337 Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 392 (926)
|..|+||++.|+|||||||++|.|..+++++++++++|+++++++++.+.+.+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999998877654
No 116
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.47 E-value=0.00023 Score=67.97 Aligned_cols=78 Identities=9% Similarity=0.036 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEecc
Q 002414 80 WNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLNEY 159 (926)
Q Consensus 80 Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV~d 159 (926)
||.++.++.+.+++++-+..+.+ .+......+..+|.++-++|.+|.++++..+ ++
T Consensus 23 f~~~i~~lil~sv~~v~~et~~~----------i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------- 78 (147)
T 2kyh_A 23 VELGVSYAALLSVIVVVVEYTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD----------- 78 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh----------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc-----------
Confidence 78888887777776655543221 1112234678899999999999999999754 21
Q ss_pred HHHHHHHHhhhhhhhHHHhhccHhHHH
Q 002414 160 AQEITRKYLLFFLPIDLLAILPLPQVV 186 (926)
Q Consensus 160 ~~~Ia~~Yl~~~F~iDlls~lP~~~i~ 186 (926)
.++|+++ =++|++|++|+...+
T Consensus 79 ----k~~f~~~-~iiDllailP~~~~~ 100 (147)
T 2kyh_A 79 ----PAGYVKK-TLYEIPALVPAGLLA 100 (147)
T ss_dssp ----HHHHHHH-STTTHHHHCCHHHHH
T ss_pred ----HHHHHHH-HHHHHHHHHHHHHHH
Confidence 4578887 689999999997543
No 117
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.36 E-value=0.00029 Score=66.19 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=56.0
Q ss_pred cchHHHHHHHHHHHHhhccceeeeccccCccccccccccccchHHHHHHHHHHHHHHHHHhhhceeEecCCCCCCCCeEe
Q 002414 78 PLWNWIFLISCLIAISLDPLFLYIPVISDEKKCLRLDNKLGTAAIFLRSFLDFFHIIYVIFRLRTKSFAPCWEYPQRSLN 157 (926)
Q Consensus 78 ~~Wd~~~~i~~i~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~iDi~l~f~t~y~~~~~~~~~g~lV 157 (926)
+.+|.+++++++.+++..-+..+ + ..+......+..+|.++-++|.+|+++++..+ ++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~---------~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~--------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-M---------QLSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD--------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-S---------CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-h---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---------
Confidence 33677777777777766544421 1 11222345678899999999999999999753 11
Q ss_pred ccHHHHHHHHhhhhhhhHHHhhccHhHHH
Q 002414 158 EYAQEITRKYLLFFLPIDLLAILPLPQVV 186 (926)
Q Consensus 158 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~ 186 (926)
.++|++ |=++|+++++|+....
T Consensus 64 ------~~~y~~-~niiDllailp~~~~~ 85 (132)
T 1ors_C 64 ------PAGYVK-KTLYEIPALVPAGLLA 85 (132)
T ss_dssp ------TTTTTT-TCGGGTGGGSCHHHHH
T ss_pred ------HHHHHH-HHHHHHHHHHHHHHHH
Confidence 357899 9999999999986443
No 118
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=92.81 E-value=0.094 Score=35.11 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 002414 837 WRTWAACSIQAAWSQYKLQKL 857 (926)
Q Consensus 837 ~~~~~~~~~q~~~~r~~~~~~ 857 (926)
-+.|+|+.||.|||+|.-++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999976543
No 119
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=91.99 E-value=0.12 Score=33.50 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 002414 838 RTWAACSIQAAWSQYKLQ 855 (926)
Q Consensus 838 ~~~~~~~~q~~~~r~~~~ 855 (926)
+.++|+.||.|||+|..+
T Consensus 5 Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 579999999999999754
No 120
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=87.02 E-value=28 Score=35.98 Aligned_cols=69 Identities=13% Similarity=0.019 Sum_probs=51.5
Q ss_pred cceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCcc
Q 002414 714 LKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTR 793 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~ 793 (926)
.+...|.+|+.+..+.+. +.++-+++|+..+...+ ....|.+||..- . + +....
T Consensus 209 teV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~~~-----------q~~~L~~~DsLL----I----p------a~~~y 262 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTMGG-----------RRLSLAPDDSLL----V----L------AGTSY 262 (286)
T ss_dssp EEEEEECSEEEEECCCSS-CEEEEEEESCEEEEETT-----------EEEEECTTEEEE----E----C------TTCCE
T ss_pred eEEEEEcCCccccccCcC-cEEEEEEcCceEEEECC-----------eEEeccCCCEEE----e----c------CCCeE
Confidence 345669999999999888 99999999999765332 245688888632 2 1 13567
Q ss_pred EEEEccceEEEEEcH
Q 002414 794 TVVARTEVEAFALTT 808 (926)
Q Consensus 794 tv~Al~~~e~~~l~~ 808 (926)
+..+.++|.++.+..
T Consensus 263 ~~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 263 AWERTQGSVALSVTQ 277 (286)
T ss_dssp EEEECTTCEEEEEEE
T ss_pred EEEecCCeEEEEEEE
Confidence 899999999998754
No 121
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=63.71 E-value=28 Score=30.69 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=47.9
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCc
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNST 792 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~ 792 (926)
.+....+++|+.+-..--+.+.+++|++|++++...+ ....+++||.+= . .+ ...
T Consensus 37 ~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~~-----------~~~~l~~Gd~i~----i---p~-------~~~ 91 (114)
T 3fjs_A 37 EVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVDG-----------AQRRLHQGDLLY----L---GA-------GAA 91 (114)
T ss_dssp EEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEETT-----------EEEEECTTEEEE----E---CT-------TCC
T ss_pred EEEEEEECCCCccCceeCCCcEEEEEEECEEEEEECC-----------EEEEECCCCEEE----E---CC-------CCc
Confidence 3456678899888766667789999999999988532 246799999754 1 11 234
Q ss_pred cEEEEccceEEEE
Q 002414 793 RTVVARTEVEAFA 805 (926)
Q Consensus 793 ~tv~Al~~~e~~~ 805 (926)
.++.+.+++.++.
T Consensus 92 H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 92 HDVNAITNTSLLV 104 (114)
T ss_dssp EEEEESSSEEEEE
T ss_pred EEEEeCCCcEEEE
Confidence 5777888877544
No 122
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=62.76 E-value=21 Score=35.98 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=53.8
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCc
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNST 792 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~ 792 (926)
.+....+++|+.+=..--+.+.+++|++|++++...+ ....+++||++= -| +...
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~~-----------~~~~l~~Gd~~~--------~p------~~~~ 92 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIEN-----------NKKTISNGDFLE--------IT------ANHN 92 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEESS-----------CEEEEETTEEEE--------EC------SSCC
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEECC-----------EEEEECCCCEEE--------EC------CCCC
Confidence 4566789999999888889999999999999998542 136799999754 11 1236
Q ss_pred cEEEEccceEEEEE
Q 002414 793 RTVVARTEVEAFAL 806 (926)
Q Consensus 793 ~tv~Al~~~e~~~l 806 (926)
..+.|.+++.++.+
T Consensus 93 H~~~a~~~~~~l~i 106 (227)
T 3rns_A 93 YSIEARDNLKLIEI 106 (227)
T ss_dssp EEEEESSSEEEEEE
T ss_pred EEEEECCCcEEEEE
Confidence 68889999999877
No 123
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=60.86 E-value=31 Score=30.38 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=45.7
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRA 563 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A 563 (926)
+....+++|..+-..-.+.+++++|++|++++... ++ ...+++||.+=- ++. ..-.+++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~i-------p~~-------~~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGVD--GA-----QRRLHQGDLLYL-------GAG-------AAHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEET--TE-----EEEECTTEEEEE-------CTT-------CCEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEEC--CE-----EEEECCCCEEEE-------CCC-------CcEEEEe
Confidence 44566889988766555667999999999998762 33 268899987632 221 2346777
Q ss_pred cceEEEEE
Q 002414 564 ATEVEAFV 571 (926)
Q Consensus 564 ~t~~~ll~ 571 (926)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 78776554
No 124
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=60.84 E-value=17 Score=32.53 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=34.0
Q ss_pred EEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 485 KPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
....+.||..+-.. ...+++++|++|++.+.. +++ ...+++||.+-
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 34567888766443 377899999999999876 333 26899999874
No 125
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=56.54 E-value=32 Score=29.95 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=42.9
Q ss_pred ceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccE
Q 002414 715 KPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRT 794 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~t 794 (926)
....+++|..+-....+.+.+++|++|++.+...+ ....+++||++= . .+ ....+
T Consensus 41 ~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i~~-----------~~~~l~~Gd~i~----i---~~-------~~~H~ 95 (114)
T 2ozj_A 41 SLFSFADGESVSEEEYFGDTLYLILQGEAVITFDD-----------QKIDLVPEDVLM----V---PA-------HKIHA 95 (114)
T ss_dssp EEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEETT-----------EEEEECTTCEEE----E---CT-------TCCBE
T ss_pred EEEEECCCCccccEECCCCeEEEEEeCEEEEEECC-----------EEEEecCCCEEE----E---CC-------CCcEE
Confidence 33446677766555566789999999999987432 246799999753 1 11 12335
Q ss_pred EEEccceEEEEE
Q 002414 795 VVARTEVEAFAL 806 (926)
Q Consensus 795 v~Al~~~e~~~l 806 (926)
+.+.+++.++.+
T Consensus 96 ~~~~~~~~~~~i 107 (114)
T 2ozj_A 96 IAGKGRFKMLQI 107 (114)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEeCCCcEEEEE
Confidence 555567776654
No 126
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=56.11 E-value=37 Score=34.06 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=52.3
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVR 562 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~ 562 (926)
.+....+.+|+.+=..--+++.+++|++|++++... + + ...+++||++= +++. ....++
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~-~-~-----~~~l~~Gd~~~-------~p~~-------~~H~~~ 96 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE-N-N-----KKTISNGDFLE-------ITAN-------HNYSIE 96 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES-S-C-----EEEEETTEEEE-------ECSS-------CCEEEE
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC-C-E-----EEEECCCCEEE-------ECCC-------CCEEEE
Confidence 345567899999977777899999999999998763 3 2 26889998752 2222 245788
Q ss_pred EcceEEEEEEe
Q 002414 563 AATEVEAFVLM 573 (926)
Q Consensus 563 A~t~~~ll~L~ 573 (926)
|.+++.++.+.
T Consensus 97 a~~~~~~l~i~ 107 (227)
T 3rns_A 97 ARDNLKLIEIG 107 (227)
T ss_dssp ESSSEEEEEEE
T ss_pred ECCCcEEEEEE
Confidence 99999999873
No 127
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=54.46 E-value=10 Score=36.35 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002414 838 RTWAACSIQAAWSQYKLQKLQREKENR 864 (926)
Q Consensus 838 ~~~~~~~~q~~~~r~~~~~~~~~~~~~ 864 (926)
+.+||..||.|||+|+.|+..+.+...
T Consensus 129 e~~aA~~IQra~R~~~~r~~~~~~~~~ 155 (168)
T 4dck_A 129 EEVSAMVIQRAFRRHLLQRSLKHASFL 155 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccccccccc
Confidence 568999999999999877665444433
No 128
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=53.41 E-value=40 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=31.8
Q ss_pred EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 486 ~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
...+.+|..+-....+..++++|++|.+.+.. +++ ...+++||.+
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i 86 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVL 86 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEE
Confidence 33466777654444567799999999999765 233 2688999876
No 129
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=52.97 E-value=13 Score=45.36 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002414 336 KFSHCFLWGLQNLSCFGQNLQTSSYFWENFFAIVITISGLVFFLYLIGNIQIYLQS 391 (926)
Q Consensus 336 ~Y~~s~ywa~~tlttvGyGdi~p~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 391 (926)
....++|+++.++++.| ++..|.+...+++.++++++++++.+...+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45689999999999888 67899999999999999999999999999999999875
No 130
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=52.81 E-value=25 Score=31.42 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=33.8
Q ss_pred ceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
....+.+|..+-.. .+.+++++|++|++++... | ....+++||.+-
T Consensus 43 ~~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~~--------g---~~~~l~~GD~v~ 88 (119)
T 3lwc_A 43 GYGRYAPGQSLTET-MAVDDVMIVLEGRLSVSTD--------G---ETVTAGPGEIVY 88 (119)
T ss_dssp EEEEECTTCEEEEE-CSSEEEEEEEEEEEEEEET--------T---EEEEECTTCEEE
T ss_pred EEEEECCCCCcCcc-CCCCEEEEEEeCEEEEEEC--------C---EEEEECCCCEEE
Confidence 34567788766444 3789999999999999752 2 245799999865
No 131
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=52.32 E-value=34 Score=29.62 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=33.8
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
+-...+.+|..-.. ....++++|++|++.+...++ + ...+++||.+=
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~g-~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTEDG-K-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETTC-C-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEECCC-C-----EEEECCCCEEE
Confidence 33566788876544 446799999999999876323 3 26899999863
No 132
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=51.77 E-value=56 Score=28.21 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=45.1
Q ss_pred cceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCcc
Q 002414 714 LKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTR 793 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~ 793 (926)
+....+++|..+-..--+...+++|++|.+.+...+ ....+++||++= . .+ ....
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~~~-----------~~~~l~~Gd~~~----i---p~-------~~~H 96 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITIDQ-----------ETYRVAEGQTIV----M---PA-------GIPH 96 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEETT-----------EEEEEETTCEEE----E---CT-------TSCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEECC-----------EEEEECCCCEEE----E---CC-------CCCE
Confidence 445677888876544445789999999999987432 235789999754 1 11 2244
Q ss_pred EEEEccceEEEEE
Q 002414 794 TVVARTEVEAFAL 806 (926)
Q Consensus 794 tv~Al~~~e~~~l 806 (926)
.+.+.++++++.+
T Consensus 97 ~~~~~~~~~~~~v 109 (115)
T 1yhf_A 97 ALYAVEAFQMLLV 109 (115)
T ss_dssp EEEESSCEEEEEE
T ss_pred EEEECCCceEEEE
Confidence 5666777776654
No 133
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=51.72 E-value=74 Score=27.45 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=44.1
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRA 563 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A 563 (926)
+....++||..+-.--.+..++++|++|.+.+.. +++ ...+.+||.+= +++. ..-.+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFF-------VPPH-------VDHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEE-------ECTT-------CCEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEE-------ECcC-------CceeeEe
Confidence 3455678887753323346789999999998776 333 26889999852 2221 2345666
Q ss_pred cceEEEEEE
Q 002414 564 ATEVEAFVL 572 (926)
Q Consensus 564 ~t~~~ll~L 572 (926)
.+++.++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 677777766
No 134
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=49.74 E-value=16 Score=32.83 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=33.1
Q ss_pred EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 486 ~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
.-...||..-+... ..++++.|++|++.+...+| . ...+++||.|-
T Consensus 46 vWe~tPG~~~~~~~-~~~E~~~iLeG~~~lt~ddG-~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 46 VWMAEPGIYNYAGR-DLEETFVVVEGEALYSQADA-D-----PVKIGPGSIVS 91 (116)
T ss_dssp EEEECSEEEEECCC-SEEEEEEEEECCEEEEETTC-C-----CEEECTTEEEE
T ss_pred EEecCCceeECeeC-CCcEEEEEEEeEEEEEeCCC-e-----EEEECCCCEEE
Confidence 34567777665543 34599999999999876544 3 26889999875
No 135
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=48.39 E-value=67 Score=27.71 Aligned_cols=68 Identities=9% Similarity=0.106 Sum_probs=43.8
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEE
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRA 563 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A 563 (926)
+....+.||..+-.--....++++|++|.+.+.. + ++ ...+++||.+= +++. ..-.+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-~-~~-----~~~l~~Gd~~~-------ip~~-------~~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-D-QE-----TYRVAEGQTIV-------MPAG-------IPHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-T-TE-----EEEEETTCEEE-------ECTT-------SCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-C-CE-----EEEECCCCEEE-------ECCC-------CCEEEEE
Confidence 3455678888764333346799999999998865 2 33 26789998863 2221 2345666
Q ss_pred cceEEEEEE
Q 002414 564 ATEVEAFVL 572 (926)
Q Consensus 564 ~t~~~ll~L 572 (926)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 677777655
No 136
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=48.15 E-value=22 Score=31.59 Aligned_cols=48 Identities=17% Similarity=-0.032 Sum_probs=33.2
Q ss_pred cEEEEeCCCCEEEccCCcc-CeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLEGDRI-DGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~-~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
+....+.||..+-..-... .++++|++|++.+...++ + ...+++||.+
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~~-~-----~~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGNG-I-----VTHLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECSTT-C-----EEEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECCC-e-----EEEeCCCCEE
Confidence 4456788888765443443 689999999998754233 3 2678999975
No 137
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=48.03 E-value=15 Score=33.33 Aligned_cols=46 Identities=13% Similarity=-0.016 Sum_probs=32.3
Q ss_pred EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 486 ~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
.....||..-.+..+ .+++++|++|++.+...+ ++ ...+++||.+-
T Consensus 53 ~w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~-g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 53 VWESTSGSFQSNTTG-YIEYCHIIEGEARLVDPD-GT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEEECCCTT-EEEEEEEEEEEEEEECTT-CC-----EEEEETTCEEE
T ss_pred EEEECCCceeeEcCC-CcEEEEEEEEEEEEEECC-Ce-----EEEECCCCEEE
Confidence 344567776654333 389999999999987643 33 26899999874
No 138
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=46.18 E-value=70 Score=27.63 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=45.2
Q ss_pred cceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCcc
Q 002414 714 LKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTR 793 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~ 793 (926)
+....+++|..+-..--+..++++|++|.+.+...+ ....+.+||.+= . .+ ....
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-----------~~~~l~~Gd~~~----i---p~-------~~~H 90 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNVDG-----------VIKVLTAGDSFF----V---PP-------HVDH 90 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEETT-----------EEEEECTTCEEE----E---CT-------TCCE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEECC-----------EEEEeCCCCEEE----E---Cc-------CCce
Confidence 445667888776444445778999999999987532 246799999743 1 11 2244
Q ss_pred EEEEccceEEEEE
Q 002414 794 TVVARTEVEAFAL 806 (926)
Q Consensus 794 tv~Al~~~e~~~l 806 (926)
.+.+.++++++.+
T Consensus 91 ~~~~~~~~~~l~v 103 (116)
T 2pfw_A 91 GAVCPTGGILIDT 103 (116)
T ss_dssp EEEESSCEEEEEE
T ss_pred eeEeCCCcEEEEE
Confidence 5666777777766
No 139
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=44.83 E-value=31 Score=33.05 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=28.1
Q ss_pred CccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 500 DRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 500 d~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
++.++++++++|.+.+...++++.. -..+++||.|=
T Consensus 53 h~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 53 DPLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp CSSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 3678999999999999888755321 36889999873
No 140
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=43.17 E-value=54 Score=30.20 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=40.7
Q ss_pred CCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcH
Q 002414 729 GRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTT 808 (926)
Q Consensus 729 Gd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~ 808 (926)
-+..|++|+|++|++.+...+.. .++.......++||+++= -|+ ---.+-.|-.+|.++.+..
T Consensus 47 H~~tDE~Fivl~G~l~i~~rd~~---~~~~~d~~V~l~~Ge~yv--------VPk------GveH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 47 HHSTDEQFILSAGKAILITAEKE---NDKFNIELTLMEKGKVYN--------VPA------ECWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp ESSCCEEEEEEESCEEEEEEEEE---TTEEEEEEEECCTTCCEE--------ECT------TCEEEEEECTTCEEEEEEE
T ss_pred CCCCCeEEEEEecEEEEEEecCc---CCCCccceEEecCCCEEE--------eCC------CccCcccCCCceEEEEEEe
Confidence 35579999999999999877521 112223457789999875 111 1123445667777776654
Q ss_pred H
Q 002414 809 D 809 (926)
Q Consensus 809 ~ 809 (926)
.
T Consensus 110 ~ 110 (140)
T 3d0j_A 110 S 110 (140)
T ss_dssp S
T ss_pred C
Confidence 4
No 141
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=43.11 E-value=36 Score=32.80 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=36.5
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
+....+.||.........++++++|++|++.+...+.+... ...+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 45567889887654444467999999999988765433221 46899999863
No 142
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=42.68 E-value=35 Score=32.71 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 731 PVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 731 ~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+.++++++++|.+.+...+ ++......+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-------~g~~~~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-------DGRRERADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-------TTEEEEEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEc-------CCceeeEEECCCCEEE
Confidence 5789999999999998776 2334557899999865
No 143
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=42.37 E-value=86 Score=30.02 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=53.0
Q ss_pred HHHHHHHhhcce----EEeCCCCEEE-ccCC----------CCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCC
Q 002414 705 KTLDDICIYLKP----VLYEKKSWIF-REGR----------PVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGD 769 (926)
Q Consensus 705 ~~l~~l~~~~~~----~~~~~g~~I~-~eGd----------~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd 769 (926)
+.++.....+++ +..-.+++++ ..|. +.++++++++|.+.+-..+. |..++.+....+++||
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~---g~~~~~~~dv~i~eGd 88 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDE---TDAEPKFIDIIINEGD 88 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEEC---SSSSCEEEEEEECTTE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcC---CCcccceeeEEECCCC
Confidence 445566666666 4444455552 3333 45699999999999997762 1111245567899999
Q ss_pred eehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEcHH
Q 002414 770 LCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALTTD 809 (926)
Q Consensus 770 ~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~~~ 809 (926)
+|= . |. .-..+-++-.++..+.+.+.
T Consensus 89 mfl----l----P~------gvpHsP~r~~e~v~lviErk 114 (176)
T 1zvf_A 89 SYL----L----PG------NVPHSPVRFADTVGIVVEQD 114 (176)
T ss_dssp EEE----E----CT------TCCEEEEECTTCEEEEEEEC
T ss_pred EEE----c----CC------CCCcCCcccCCcEEEEEEec
Confidence 875 1 11 11224444567777776654
No 144
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=42.11 E-value=51 Score=30.39 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=41.2
Q ss_pred EccCCccCeEEEEEeeEEEEEEeeCC--eeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEe
Q 002414 496 VLEGDRIDGMLFVMRGKLWSATMVGG--RMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLM 573 (926)
Q Consensus 496 ~~eGd~~~~ly~I~~G~v~v~~~~~~--~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~ 573 (926)
++..+..|++|+|++|++.+...++. .... ....+++|+++-- |+. ---+-.|.++|+++.+.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvV--------PkG------veH~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNV--------PAE------CWFYSITQKDTKMMYVQ 108 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEE--------CTT------CEEEEEECTTCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEe--------CCC------ccCcccCCCceEEEEEE
Confidence 44556779999999999998876431 1000 1367889887632 111 12345667888888776
Q ss_pred HH
Q 002414 574 SD 575 (926)
Q Consensus 574 ~~ 575 (926)
..
T Consensus 109 p~ 110 (140)
T 3d0j_A 109 DS 110 (140)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 145
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=41.91 E-value=16 Score=31.09 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred EEEEeCCCCEEEccCCccC-eEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 485 KPVLYAEESHIVLEGDRID-GMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~-~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
....++||...-..--+.. ++++|++|.+.+...++.+ ...+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~g~~-----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSV-----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETTEEE-----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCCCCE-----EEEEcCCCEEE
Confidence 4456788876522222333 5999999999987643312 26899999874
No 146
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=41.32 E-value=25 Score=33.84 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=33.5
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
.+....++||...-.--....++.+|++|++++...++.. ..|++||.+
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~ge~------~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDDGAK------RTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGGGCE------EEECTTCEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECCCeE------EEECCCCEE
Confidence 3455667888754332234457889999999987643332 689999998
No 147
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=40.81 E-value=42 Score=28.71 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=34.2
Q ss_pred cceEEeCCCCEEEcc--CCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 714 LKPVLYEKKSWIFRE--GRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 714 ~~~~~~~~g~~I~~e--Gd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+....+++|..+-.. --+ ...+++|++|++.+...+ ....+++||++=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~~-----------~~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVDG-----------HTQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEETT-----------EEEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEECC-----------EEEEeCCCCEEE
Confidence 345677888877544 344 679999999999987532 245789999753
No 148
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=40.07 E-value=40 Score=29.85 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=36.1
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.+....+++|..+-..--+...+++|++|++.+...+ ....+++||++=
T Consensus 42 ~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-----------~~~~l~~Gd~~~ 90 (126)
T 4e2g_A 42 MLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTIGE-----------ETRVLRPGMAYT 90 (126)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEETT-----------EEEEECTTEEEE
T ss_pred EEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEECC-----------EEEEeCCCCEEE
Confidence 3456678888877555555689999999999987532 246789999753
No 149
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=39.50 E-value=34 Score=32.82 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=38.7
Q ss_pred CCccCeEEEEEeeEEEEEEeeCCee-eeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeHHH
Q 002414 499 GDRIDGMLFVMRGKLWSATMVGGRM-SFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMSDN 576 (926)
Q Consensus 499 Gd~~~~ly~I~~G~v~v~~~~~~~~-~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~~~ 576 (926)
-++.++++++++|.+.+...+++.. ..+.-..+++||.|= +.+. . .-+-++..++..+.+.+..
T Consensus 51 ~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfl-------lP~g----v---pHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 51 INPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYL-------LPGN----V---PHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp ECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEE-------ECTT----C---CEEEEECTTCEEEEEEECC
T ss_pred CCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEE-------cCCC----C---CcCCcccCCcEEEEEEecC
Confidence 3456799999999999988774400 001136889999873 2222 1 1223335667777666543
No 150
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=38.94 E-value=39 Score=29.21 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=32.9
Q ss_pred ceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
-...+++|..-.. -+.+++++|++|++.+...+ + ....+++||.+=
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~~-------g---~~~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTTED-------G---KKYVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEETT-------C---CEEEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEECC-------C---CEEEECCCCEEE
Confidence 3556777776544 45789999999999998531 1 245799999864
No 151
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=38.80 E-value=50 Score=27.63 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=32.9
Q ss_pred cceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 714 LKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+....+++|..+-..--+ .+.+++|++|++.+...+ ....+++||++=
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~~-----------~~~~l~~Gd~~~ 78 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGE-----------EEALLAPGMAAF 78 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETT-----------EEEEECTTCEEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEECC-----------EEEEeCCCCEEE
Confidence 345567888876443333 357999999999987432 246789999753
No 152
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=37.89 E-value=45 Score=33.26 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=31.3
Q ss_pred EEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 487 VLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 487 ~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
..+.||..+=.--.+.+++|+|++|.+++...+++ ...+++|+.+=
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g~------~~~l~pGd~v~ 182 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFHLRNAP------DLMLEPGQTRF 182 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEEETTSC------CEEECTTCEEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEEECCCC------EEecCCCCEEE
Confidence 44555555433334678999999999988764343 26889998863
No 153
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=37.77 E-value=64 Score=28.44 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=34.0
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
+....+.||..+-.--.+..++++|++|.+.+.. +++ ...+++||.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~ 89 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAY 89 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEE
Confidence 4456678888775444445799999999999866 233 2688999876
No 154
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=37.37 E-value=50 Score=28.23 Aligned_cols=47 Identities=23% Similarity=0.163 Sum_probs=33.3
Q ss_pred cEEEEeCCCCEEEcc--CCc-cCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLE--GDR-IDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~e--Gd~-~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
+....+.||..+-.. -.. ..++++|++|++.+... ++ ...+++||.+
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~ 72 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLI 72 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 344567888876543 334 67999999999987762 33 2678999876
No 155
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=36.12 E-value=42 Score=32.54 Aligned_cols=50 Identities=16% Similarity=0.041 Sum_probs=33.3
Q ss_pred EEEeCCCCEEE---ccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 486 PVLYAEESHIV---LEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 486 ~~~~~~ge~I~---~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
...++||...- .-..++.++++|++|.+.+...+++... ...+++||.+=
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 34567877653 2233457999999999998874422111 37899999873
No 156
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=35.80 E-value=57 Score=27.23 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=32.3
Q ss_pred cEEEEeCCCCEEEccCCc-cCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLEGDR-IDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~-~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
+....+.||..+-..-.. .+++++|++|.+.+... ++ ...+++||.+
T Consensus 30 ~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~ 77 (105)
T 1v70_A 30 YDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAA 77 (105)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEE
T ss_pred EEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEE
Confidence 344567888876433323 35799999999987653 33 2688999976
No 157
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=35.07 E-value=1.3e+02 Score=25.31 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=30.5
Q ss_pred EEEEeCCCCEEEccCCc-cCeE-EEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 485 KPVLYAEESHIVLEGDR-IDGM-LFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~-~~~l-y~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
....+.+|..+-..-.. ..++ ++|++|.+.+...++.. ..+++||.+
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~~~~------~~l~~Gd~~ 84 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDGDAV------IPAPRGAVL 84 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGGGCE------EEECTTEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCCCEE------EEECCCCEE
Confidence 34457888776432222 2466 89999999876532332 678999876
No 158
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=34.65 E-value=41 Score=24.51 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 002414 838 RTWAACSIQAAWSQYKLQK 856 (926)
Q Consensus 838 ~~~~~~~~q~~~~r~~~~~ 856 (926)
++.||+.||..|+.|..|+
T Consensus 27 ~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 27 KVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3458888888888887665
No 159
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=33.72 E-value=52 Score=31.58 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=37.5
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.+....+++|......-...+++++|++|++++...+. ++ .....+++||.+=
T Consensus 42 ~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~------~~-~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 42 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNP------DG-RDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEET------TE-EEEEEEETTEEEE
T ss_pred EEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeC------CC-cEEEEECCCCEEE
Confidence 35566788888765553346899999999999986652 11 1355899999764
No 160
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=33.42 E-value=39 Score=30.89 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=30.9
Q ss_pred EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 486 ~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
...+.||..-.. ...+++++|++|++.+... ++ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEE
Confidence 445778843222 2467999999999998763 33 26899999874
No 161
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=32.88 E-value=41 Score=28.89 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=40.5
Q ss_pred eCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEE
Q 002414 489 YAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVE 568 (926)
Q Consensus 489 ~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ 568 (926)
..+|+...+..+..+++++|++|.+.+...++. ...+++||.+= +++.. .-.+.+.+++.
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~~~------~~~l~~Gd~~~-------ip~~~-------~H~~~~~~~~~ 94 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDFADGG------SMTIREGEMAV-------VPKSV-------SHRPRSENGCS 94 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEETTSC------EEEECTTEEEE-------ECTTC-------CEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEECCCc------EEEECCCCEEE-------ECCCC-------cEeeEeCCCeE
Confidence 445654433333338999999999998764323 26889998863 22221 22344456788
Q ss_pred EEEEeHHHH
Q 002414 569 AFVLMSDNL 577 (926)
Q Consensus 569 ll~L~~~~f 577 (926)
++.+.....
T Consensus 95 ~l~i~~~~~ 103 (107)
T 2i45_A 95 LVLIELSDP 103 (107)
T ss_dssp EEEEECC--
T ss_pred EEEEECCCc
Confidence 887765543
No 162
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=32.49 E-value=1.1e+02 Score=23.24 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002414 840 WAACSIQAAWSQYKLQKLQ 858 (926)
Q Consensus 840 ~~~~~~q~~~~r~~~~~~~ 858 (926)
.+++.||..|+.|..|+.-
T Consensus 29 ~aai~IQ~~~Rg~~aR~~~ 47 (58)
T 2ix7_C 29 RAAITVQRYVRGYQARCYA 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4889999999999877763
No 163
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=31.95 E-value=61 Score=30.73 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=34.2
Q ss_pred cceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 714 LKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+....+++|..+-..--+..++++|++|++.+...+ ....+++||++=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~~-----------~~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLDD-----------RVEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEETT-----------EEEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEECC-----------EEEEECCCCEEE
Confidence 345567777766444456789999999999987432 256789999754
No 164
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=30.20 E-value=88 Score=32.26 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=39.3
Q ss_pred HHhhcceEEeCCCCEE-EccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 710 ICIYLKPVLYEKKSWI-FREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 710 l~~~~~~~~~~~g~~I-~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
-...+...++++|..| +.+--.-++-++|++|+..+...+ .-..+++||++=
T Consensus 184 ~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l~~-----------~~~~V~~GD~i~ 236 (266)
T 4e2q_A 184 YDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGD-----------NWYPVQAGDVIW 236 (266)
T ss_dssp CSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEETT-----------EEEEEETTCEEE
T ss_pred cceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEECC-----------EEEEecCCCEEE
Confidence 3456677889999998 457677789999999998887432 245688999754
No 165
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=30.06 E-value=37 Score=30.36 Aligned_cols=46 Identities=13% Similarity=0.316 Sum_probs=32.7
Q ss_pred eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.-..++|..-+.. +..++++.|++|++.+...+ |. ...+++||.+-
T Consensus 46 vWe~tPG~~~~~~-~~~~E~~~iLeG~~~lt~dd-------G~---~~~l~aGD~~~ 91 (116)
T 3es4_A 46 VWMAEPGIYNYAG-RDLEETFVVVEGEALYSQAD-------AD---PVKIGPGSIVS 91 (116)
T ss_dssp EEEECSEEEEECC-CSEEEEEEEEECCEEEEETT-------CC---CEEECTTEEEE
T ss_pred EEecCCceeECee-CCCcEEEEEEEeEEEEEeCC-------Ce---EEEECCCCEEE
Confidence 3466777766554 33469999999999998543 22 45789999876
No 166
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=29.79 E-value=50 Score=29.13 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=33.8
Q ss_pred hcceEEeCCCCEEEccCCCC-CeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 713 YLKPVLYEKKSWIFREGRPV-DKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~-~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.+....+++|..+-..--+. ..+++|++|++.+...+ +. ...+++||++=
T Consensus 40 ~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-------~~---~~~l~~Gd~~~ 90 (125)
T 3h8u_A 40 VVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQGN-------GI---VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECST-------TC---EEEEETTEEEE
T ss_pred EEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEECC-------Ce---EEEeCCCCEEE
Confidence 34456778888775554453 78889999999987422 22 35689999753
No 167
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=29.59 E-value=69 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.037 Sum_probs=33.0
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
+....+.||..+-..--...++++|++|++.+... ++ ...+++||++
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i 104 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCV 104 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEE
Confidence 34556778876543334578999999999987652 33 2688999986
No 168
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=29.33 E-value=31 Score=31.15 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=31.1
Q ss_pred EEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 717 VLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 717 ~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
-..++|..-....+ .+++++|++|++.+...+ |. ...+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~~-------g~---~~~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVDPD-------GT---VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEECTT-------CC---EEEEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEECC-------Ce---EEEECCCCEEE
Confidence 44566666554332 389999999999998532 22 35699999875
No 169
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=29.08 E-value=43 Score=36.83 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=35.6
Q ss_pred EEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 485 KPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
....++||+.+-.---...++|||++|+-.....+|.. ..+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v~G~~------~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK------VELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEETTEE------EEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEECCEE------EEEcCCCEEE
Confidence 67789999988655555568999999987554444433 6889999874
No 170
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=27.87 E-value=52 Score=30.87 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=23.9
Q ss_pred ccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 501 RIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 501 ~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
..+++++|++|++++.. +++ ...+++||.+
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i 112 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELI 112 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEE
Confidence 46789999999999875 344 3789999986
No 171
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=26.34 E-value=60 Score=30.62 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=32.9
Q ss_pred cEEEEeCCCCEEE--ccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 484 LKPVLYAEESHIV--LEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 484 l~~~~~~~ge~I~--~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
+....+.||.... +.....+++++|++|++.+... ++ ...+++||.+-
T Consensus 45 ~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 45 VNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 3456678888542 3333347999999999998763 22 26889998863
No 172
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=26.32 E-value=56 Score=30.66 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=31.7
Q ss_pred eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
...+++|..+-..--+..++++|++|++++...+ ....+++||++=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v~g-----------~~~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLVGE-----------TISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEETT-----------EEEEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEECC-----------EEEEeCCCCEEE
Confidence 3455666655444455678999999999988432 256789999753
No 173
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=25.78 E-value=70 Score=30.88 Aligned_cols=50 Identities=18% Similarity=0.045 Sum_probs=33.3
Q ss_pred eEEeCCCCEEE---ccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIF---REGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~---~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
...+++|...- ..-.+.+++++|++|++++...+ ++......+++||++=
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~-------~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGD-------KENPKEALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESC-------TTSCEEEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECC-------cCCcccEEECCCCEEE
Confidence 44667776543 22334579999999999988543 1122356799999864
No 174
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.69 E-value=1e+02 Score=29.58 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=31.4
Q ss_pred eEEeCCCCEEEc--cCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIFR--EGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~~--eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
...+++|...-. -.....++++|++|++.+...+ ....+++||++=
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~~~-----------~~~~l~~GD~i~ 155 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDE-----------QWHELQQGEHIR 155 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEETT-----------EEEEECTTCEEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEECC-----------EEEEeCCCCEEE
Confidence 345677776542 2234579999999999987432 245799999753
No 175
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=25.53 E-value=58 Score=30.97 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=31.8
Q ss_pred eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
...+++|..+-..--+..++++|++|++++...+ ....+++||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v~g-----------~~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMVGR-----------AVSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEETT-----------EEEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEECC-----------EEEEeCCCCEEE
Confidence 3456677665444455678999999999986432 246789999753
No 176
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=25.47 E-value=1.1e+02 Score=29.96 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=46.3
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEE
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVR 562 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~ 562 (926)
.+....+.||..+-.-...+.++.+|++|.+. ++. ..+.+||++=. ++. ..-+..
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~-------~~~~~Gd~~~~-------p~g-------~~H~p~ 180 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET-------DRFGAGDIEIA-------DQE-------LEHTPV 180 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS-------SEEETTCEEEE-------CSS-------CCCCCE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc-------EEECCCeEEEe-------CcC-------CccCCE
Confidence 45677899999998888789999999999965 221 56788888532 222 223455
Q ss_pred E--cceEEEEEEe
Q 002414 563 A--ATEVEAFVLM 573 (926)
Q Consensus 563 A--~t~~~ll~L~ 573 (926)
+ .+.|.++...
T Consensus 181 a~~~~gc~~l~~~ 193 (195)
T 2q1z_B 181 AERGLDCICLAAT 193 (195)
T ss_dssp ECSSSCEEEEEEE
T ss_pred eCCCCCEEEEEEe
Confidence 5 6788887753
No 177
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=25.36 E-value=60 Score=30.29 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=32.6
Q ss_pred cEEEEeCCCCE-E-EccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESH-I-VLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~-I-~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
+....++||.. . .+.....+++++|++|++.+.. +++ ...+++||++
T Consensus 48 ~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 48 IHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 34466788874 2 2223356799999999999875 233 2688999987
No 178
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=25.34 E-value=75 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=32.2
Q ss_pred ceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
....+++|..+-..--+ ..++++|++|++.+...+ ....+++||++=
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~-----------~~~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDNG-----------KDVPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEETT-----------EEEEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEECC-----------EEEEeCCCcEEE
Confidence 34567888766432233 368999999999987432 246789999753
No 179
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=25.34 E-value=21 Score=30.68 Aligned_cols=50 Identities=14% Similarity=0.032 Sum_probs=33.2
Q ss_pred cEEEEeCCCCEEEccCCcc-CeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLEGDRI-DGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~-~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
.+...++||+-+=.+--+. ...|+|.+|.+.+...++... ...+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 4556789999886554444 468888999999876554432 3567888765
No 180
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=24.99 E-value=60 Score=29.58 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=30.2
Q ss_pred eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
...+++|..-.. -..+++++|++|++.+... | ....+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--------g---~~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--------G---ETMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--------T---EEEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--------C---EEEEECCCcEEE
Confidence 445667743222 2468999999999998843 2 234799999865
No 181
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=24.89 E-value=37 Score=21.01 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002414 840 WAACSIQAAWSQYKLQ 855 (926)
Q Consensus 840 ~~~~~~q~~~~r~~~~ 855 (926)
.|+..||.-|+++++|
T Consensus 7 YA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5789999999988765
No 182
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=24.67 E-value=51 Score=31.45 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=24.4
Q ss_pred CCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 731 PVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 731 ~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
.++.+++|++|++.+...+ ....+++||.+=
T Consensus 109 ~gEE~~yVLeG~v~vtl~g-----------~~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTVCK-----------NKFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEETT-----------EEEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEECC-----------EEEEEcCCCEEE
Confidence 4678999999999998542 345799999865
No 183
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.67 E-value=1.1e+02 Score=28.06 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=32.7
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
+....+.||..+-.---...++++|++|.+.+...+. . ...+.+||.+=
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~-~-----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERGK-P-----ARILKKGDVVE 98 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETTS-C-----CEEEETTCEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECCE-E-----EEEECCCCEEE
Confidence 3455678887764333344789999999999875332 1 15788998763
No 184
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=24.59 E-value=81 Score=29.43 Aligned_cols=54 Identities=6% Similarity=-0.044 Sum_probs=33.1
Q ss_pred cEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCee--eeeeeeEeCCCCee
Q 002414 484 LKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRM--SFQSGFYLSAGDYY 537 (926)
Q Consensus 484 l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~--~~~~v~~l~~G~~F 537 (926)
+....+.||..+-.--....++++|++|.+.+...++++. .......+++||.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 43 VWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 3345678887642222245689999999999887552210 00013688999886
No 185
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=24.46 E-value=76 Score=27.55 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=29.5
Q ss_pred EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeee-EeCCCCee
Q 002414 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGF-YLSAGDYY 537 (926)
Q Consensus 486 ~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~-~l~~G~~F 537 (926)
...+.+|..+-.--....++++|++|.+.+... +.. . .+++||.+
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~-~~~------~~~l~~Gd~i 76 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE-DQE------PHNYKEGNIV 76 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEET-TSC------CEEEETTCEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC-CEE------EEEeCCCCEE
Confidence 345667765422222456899999999988753 222 4 78999876
No 186
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=24.08 E-value=1.5e+02 Score=28.36 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=31.6
Q ss_pred EEEeCCCCEEEc--cCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 486 PVLYAEESHIVL--EGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 486 ~~~~~~ge~I~~--eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
...++||..... -.....++++|++|.+.+.. +++ ...+.+||.+
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i 154 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHI 154 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEE
Confidence 346778876542 22344699999999999765 333 3689999986
No 187
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=23.84 E-value=64 Score=30.66 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=31.5
Q ss_pred EEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 485 KPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
....+.||..+-..-....++++|++|++++.. +++ ...+++||.+
T Consensus 56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i 101 (166)
T 3jzv_A 56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEE
Confidence 344567776654333445689999999999765 233 3688999976
No 188
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.84 E-value=87 Score=27.59 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=46.9
Q ss_pred ceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccE
Q 002414 715 KPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRT 794 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~t 794 (926)
....+++|...-..--...++++|++|++.+...+ ....+++||++= . .+ ...-.
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i~~-----------~~~~l~~Gd~~~----i---~~-------~~~H~ 91 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRIND-----------EDFPVTKGDLII----I---PL-------DSEHH 91 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEETT-----------EEEEEETTCEEE----E---CT-------TCCEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEECC-----------EEEEECCCcEEE----E---CC-------CCcEE
Confidence 34556666644333345789999999999988532 246789999754 1 11 11223
Q ss_pred EEEc--cceE--EEEEcHHHHHHHHHH
Q 002414 795 VVAR--TEVE--AFALTTDDLKAVASK 817 (926)
Q Consensus 795 v~Al--~~~e--~~~l~~~dl~~l~~~ 817 (926)
+.+. ++++ ++.++.+-+..+...
T Consensus 92 ~~~~~~~~~~~~~i~f~~~~~~~~~~~ 118 (128)
T 4i4a_A 92 VINNNQEDFHFYTIWWDKESTLNFLTR 118 (128)
T ss_dssp EEECSSSCEEEEEEEECHHHHHHHHHH
T ss_pred eEeCCCCCEEEEEEEECHHHHHHHHHh
Confidence 3443 3334 456777777766655
No 189
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=23.76 E-value=1.4e+02 Score=29.12 Aligned_cols=56 Identities=13% Similarity=0.039 Sum_probs=37.4
Q ss_pred cceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 714 LKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+....+.+|...-..--+ .+++++|++|++++...+. +.+|++.....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~---~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGS---LDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECC---GGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcC---CCCCCeEEEEEECCCCEEE
Confidence 445678888866443334 5799999999999876542 0001344467899999864
No 190
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=23.50 E-value=75 Score=27.71 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=24.7
Q ss_pred CccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 500 DRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 500 d~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
...+++++|++|.+.+...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 45679999999999987643321 15789998864
No 191
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=23.37 E-value=68 Score=30.09 Aligned_cols=45 Identities=18% Similarity=0.065 Sum_probs=30.8
Q ss_pred EEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 486 PVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 486 ~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
...+.||..+-..-....++++|++|++++.. +++ ...+++||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEE
Confidence 34566776654333445689999999999875 233 2678999876
No 192
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=23.33 E-value=1e+02 Score=28.40 Aligned_cols=52 Identities=19% Similarity=0.067 Sum_probs=35.5
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeech
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGE 539 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe 539 (926)
.+....++||..+-.-..++.+.++|++|+... ..+.... -..+++||++=.
T Consensus 45 ~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~~g~~~~---~~~~~~Gd~~~~ 96 (145)
T 2o1q_A 45 WTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAG---GDTAIAPGYGYE 96 (145)
T ss_dssp EEEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGT---SEEEESSEEEEE
T ss_pred EEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--cCCCEec---ceEeCCCEEEEE
Confidence 355678999998876666678889999999973 2222210 046778887643
No 193
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.17 E-value=46 Score=28.06 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=31.6
Q ss_pred ceEEeCCCCEEEccCCCCC-eEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIFREGRPVD-KTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~-~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
....+++|...-..--+.+ .+++|++|++++...+ |. ....+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-------g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE-------GS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT-------EE--EEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC-------CC--EEEEEcCCCEEE
Confidence 3456777765422223344 5999999999987532 21 245799999764
No 194
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=22.94 E-value=1.2e+02 Score=34.29 Aligned_cols=60 Identities=7% Similarity=0.046 Sum_probs=42.9
Q ss_pred HHHHhhcceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 708 DDICIYLKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 708 ~~l~~~~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
..+--.+....+++|..+-.-=-+ ++++++|++|++++...+. .|.......+++||++=
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~-----~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDS-----NGNRVYDEELQEGHVLV 428 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECT-----TSCEEEEEEEETTCEEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeC-----CCCEEEeEEEcCCcEEE
Confidence 444456677888999876544334 6899999999999986653 24455556799999863
No 195
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=22.88 E-value=1.4e+02 Score=33.76 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=43.2
Q ss_pred HHHHHhhcceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 707 LDDICIYLKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 707 l~~l~~~~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+..+--.+....+++|..+-.-=-+ .+++++|++|++++...+. .|.......+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~-----~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNA-----QGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECT-----TSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcC-----CCCEEEeEEEcCCCEEE
Confidence 3444456677888999876544434 6899999999999986653 24444456799999864
No 196
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=22.75 E-value=1.2e+02 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCCccEEEEccceEEEEEc
Q 002414 732 VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNSTRTVVARTEVEAFALT 807 (926)
Q Consensus 732 ~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~~~tv~Al~~~e~~~l~ 807 (926)
...+++|++|.+.+...+ ....+++||++= . .+ ....++.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~~-----------~~~~l~~Gd~~~----i---p~-------~~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFRD-----------QNITLQAGEMYV----I---PK-------GVEHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECSS-----------CEEEEETTEEEE----E---CT-------TCCBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEECC-----------EEEEEcCCCEEE----E---CC-------CCeEeeEcCCCCEEEEEE
Confidence 379999999999987432 145689999753 1 11 123455555788887765
No 197
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=22.73 E-value=68 Score=30.78 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=32.4
Q ss_pred hcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCee
Q 002414 713 YLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLC 771 (926)
Q Consensus 713 ~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~f 771 (926)
.+....+++|...-.--....++.+|++|++++...+ |. ...|++||.+
T Consensus 80 ~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-------ge---~~~L~~GDsi 128 (172)
T 3es1_A 80 VIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-------GA---KRTVRQGGII 128 (172)
T ss_dssp EEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-------GC---EEEECTTCEE
T ss_pred EEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-------Ce---EEEECCCCEE
Confidence 3445567777644333334567889999999997542 11 3579999997
No 198
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=22.64 E-value=70 Score=29.97 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 731 PVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 731 ~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
..+++++|++|++++.. + | ....++|||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i-~-------g---~~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII-D-------G---RKVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE-T-------T---EEEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE-C-------C---EEEEEcCCCEEE
Confidence 46789999999999984 2 2 246799999854
No 199
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.63 E-value=1.5e+02 Score=33.73 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=45.3
Q ss_pred HHHHHhhcceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 707 LDDICIYLKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 707 l~~l~~~~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+..+--.+....+.+|.++-.-=-+ ++++++|++|++++...+. +|.......|++||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~-----~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNE-----NGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECT-----TSCEEEEEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeC-----CCcEEEEEEecCCeEEE
Confidence 4445556777889999988544333 6899999999999987653 25566678899999863
No 200
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=22.20 E-value=80 Score=29.68 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=31.3
Q ss_pred ceEEeCCCCEEE--ccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIF--REGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~--~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
....+++|.... ..-+..+++++|++|++.+...+ ....+++||++=
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~~-----------~~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQ-----------GEHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEETT-----------EEEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEECC-----------EEEEeCCCCEEE
Confidence 356677777542 11222379999999999988532 246789999754
No 201
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.19 E-value=1e+02 Score=27.68 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=31.6
Q ss_pred EEEEeCCCCEEEccCCc-cCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 485 KPVLYAEESHIVLEGDR-IDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~-~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
....++||..+-.---. ..++++|++|.+.+... ++ ...+++||.+
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEE
Confidence 34567888766432223 36899999999987652 33 2678999886
No 202
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=22.15 E-value=69 Score=28.47 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=31.7
Q ss_pred ceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 715 KPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 715 ~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
....+++|..+-..--+..++++|++|++.+...+ + ...+.+||++=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--------~---~~~l~~Gd~i~ 97 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKEQ--------G---EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECSS--------C---EEEEETTEEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEECC--------E---EEEECCCCEEE
Confidence 34556666655434445789999999999987432 1 35688998753
No 203
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=22.02 E-value=1.1e+02 Score=34.27 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.6
Q ss_pred hhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 482 SYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 482 ~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
-.+....+.||..+-..-..++++++|++|++.+...+.+... ...+++||.+-
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 3445667899987765555677999999999988764433222 47899999874
No 204
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=21.91 E-value=91 Score=34.47 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=38.2
Q ss_pred hhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 482 SYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 482 ~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
-.+....+.||..+..--...+++++|++|++.+...+.+... ...+++||.+
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~ 101 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQ 101 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEE
Confidence 3456778899987665555677999999999988654332221 3788999987
No 205
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=21.84 E-value=1.7e+02 Score=28.47 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=35.2
Q ss_pred cEEEEeCCCCEEEc-cCCccCeEEEEEeeEEEEEEeeC----CeeeeeeeeEeCCCCeec
Q 002414 484 LKPVLYAEESHIVL-EGDRIDGMLFVMRGKLWSATMVG----GRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 484 l~~~~~~~ge~I~~-eGd~~~~ly~I~~G~v~v~~~~~----~~~~~~~v~~l~~G~~FG 538 (926)
+....+.||...-. .....+++++|++|++.+...++ ++. ....+++||.+=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~---~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKL---YSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCE---EEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeE---EEEEECCCCEEE
Confidence 45567888886533 23335799999999999876543 221 136889999873
No 206
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=21.84 E-value=1.1e+02 Score=30.74 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=34.8
Q ss_pred hcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 483 YLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 483 ~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
.+....++||..+-.---+..++++|++|.+++.. +++ ...+.+||.+
T Consensus 35 ~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 35 EVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 34555688998875544457789999999999876 333 2688999843
No 207
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=21.83 E-value=1e+02 Score=27.11 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=31.1
Q ss_pred EEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 485 KPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
....+.+|...-..--...++++|++|++.+.. +++ ...+++||.+
T Consensus 37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~ 82 (128)
T 4i4a_A 37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLI 82 (128)
T ss_dssp EEEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEE
T ss_pred EEEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEE
Confidence 345567777443322346689999999998776 233 2678999876
No 208
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.80 E-value=1.4e+02 Score=33.72 Aligned_cols=56 Identities=11% Similarity=0.026 Sum_probs=40.8
Q ss_pred hhcceEEeCCCCEEEccCCC-CCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 712 IYLKPVLYEKKSWIFREGRP-VDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 712 ~~~~~~~~~~g~~I~~eGd~-~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
-.+....+++|..+-.-=-+ ++++++|++|++++...+. .|.......+++||++=
T Consensus 338 is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~-----~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 338 LSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNC-----NGERVFDGELQEGRVLI 394 (476)
T ss_dssp CCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECT-----TSCEEEEEEEETTCEEE
T ss_pred ceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEec-----CCCEEeeeEEcCCCEEE
Confidence 34567788999876544444 6899999999999986653 24455566799999863
No 209
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.76 E-value=98 Score=31.31 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=36.9
Q ss_pred hhcceEEeCCCCEEEc-cCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 712 IYLKPVLYEKKSWIFR-EGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 712 ~~~~~~~~~~g~~I~~-eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
..+...++++|..+=. +-...++.++|++|++.+...+ ....+++||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~~~-----------~~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLEE-----------NYYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEETT-----------EEEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEECC-----------EEEEcCCCCEEE
Confidence 3456778899987753 4455679999999999987432 245799999855
No 210
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=21.34 E-value=61 Score=28.19 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=29.7
Q ss_pred eEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 716 PVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 716 ~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
...+++|..+-..--+...+++|++|++.+...+ +. ...+++||++=
T Consensus 31 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~~--------~~--~~~l~~Gd~i~ 77 (117)
T 2b8m_A 31 HIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLED--------QE--PHNYKEGNIVY 77 (117)
T ss_dssp EEEEETTCBCCCEECSSCEEEEEEESEEEEEETT--------SC--CEEEETTCEEE
T ss_pred EEEECCCCcCCCEeCCCcEEEEEEeCEEEEEECC--------EE--EEEeCCCCEEE
Confidence 3455666654222334678999999999987532 11 12688999753
No 211
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.11 E-value=1e+02 Score=34.31 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=39.3
Q ss_pred hhcEEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 482 SYLKPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 482 ~~l~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
-.+....+.||..+-.--...+++++|++|++.+...+.+.. ....+++||.+-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~---~~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR---DSYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE---EEEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC---EEEEeCCCCEEE
Confidence 345677889998876665567799999999998876443322 147889999873
No 212
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=20.96 E-value=87 Score=27.77 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=30.5
Q ss_pred EEEEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCee
Q 002414 485 KPVLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYY 537 (926)
Q Consensus 485 ~~~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~F 537 (926)
....++||..+-.---...++++|++|.+.+... + + ...+++||.+
T Consensus 51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~-~-~-----~~~l~~Gd~i 96 (126)
T 1vj2_A 51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE-Q-G-----EETVEEGFYI 96 (126)
T ss_dssp EEEEEEEEEEEEEECCSSCEEEEEEESEEEEECS-S-C-----EEEEETTEEE
T ss_pred EEEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC-C-E-----EEEECCCCEE
Confidence 3445666665533233467999999999987653 2 2 2678888876
No 213
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.87 E-value=98 Score=28.42 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=33.3
Q ss_pred cceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeeh
Q 002414 714 LKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCG 772 (926)
Q Consensus 714 ~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fG 772 (926)
+....+++|..+-..--+...+++|++|++.+...+ +. ...+++||++=
T Consensus 50 ~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~--------~~--~~~l~~Gd~i~ 98 (147)
T 2f4p_A 50 VYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQERG--------KP--ARILKKGDVVE 98 (147)
T ss_dssp EEEEEECTTCEECSEECTTCEEEEEEEEEEEEEETT--------SC--CEEEETTCEEE
T ss_pred EEEEEECCCCccCceECCCceEEEEEeCEEEEEECC--------EE--EEEECCCCEEE
Confidence 345667788776433344579999999999987432 21 14688999754
No 214
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.85 E-value=1e+02 Score=31.15 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=36.6
Q ss_pred hhcEEEEeCCCCEEEc-cCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 482 SYLKPVLYAEESHIVL-EGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 482 ~~l~~~~~~~ge~I~~-eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
..+....++||..+=. +-....+.++|++|++.+.. +++ ...+++||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 3456678899987754 44456789999999998764 333 26899999864
No 215
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=20.64 E-value=1e+02 Score=30.14 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=46.5
Q ss_pred hhcceEEeCCCCEEEccCCCCCeEEEEEeeEEEEEEeecCCCCCCCCeEEEEecCCCCeehhhhhhhccCCCCCCCCCCC
Q 002414 712 IYLKPVLYEKKSWIFREGRPVDKTLFIMQGKLDSMTSNNINGGTLGGFFNLAHLGTGDLCGEELLTWALDPQSSFRPPNS 791 (926)
Q Consensus 712 ~~~~~~~~~~g~~I~~eGd~~~~~y~I~~G~v~v~~~~~~~~~~~g~~~~~~~l~~Gd~fGE~~L~~~l~~~s~~~~~~~ 791 (926)
..+...++.+|..+-...-++.++.+|++|.+. ++ + ..+++||++= .|. ..
T Consensus 125 ~~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de------~-----~~~~~Gd~~~--------~p~------g~ 175 (195)
T 2q1z_B 125 AIARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE------T-----DRFGAGDIEI--------ADQ------EL 175 (195)
T ss_dssp SEEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS------S-----SEEETTCEEE--------ECS------SC
T ss_pred cEEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC------c-----EEECCCeEEE--------eCc------CC
Confidence 355678899999998888899999999999966 21 1 3588999854 121 22
Q ss_pred ccEEEE--ccceEEEEE
Q 002414 792 TRTVVA--RTEVEAFAL 806 (926)
Q Consensus 792 ~~tv~A--l~~~e~~~l 806 (926)
..+..+ .++|.++..
T Consensus 176 ~H~p~a~~~~gc~~l~~ 192 (195)
T 2q1z_B 176 EHTPVAERGLDCICLAA 192 (195)
T ss_dssp CCCCEECSSSCEEEEEE
T ss_pred ccCCEeCCCCCEEEEEE
Confidence 334455 677777764
No 216
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=20.36 E-value=85 Score=31.81 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=29.6
Q ss_pred EEeCCCCEEEccCCccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeec
Q 002414 487 VLYAEESHIVLEGDRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYG 538 (926)
Q Consensus 487 ~~~~~ge~I~~eGd~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FG 538 (926)
-...+|....... ..+++..|++|++.+...+| . ...+++||.|-
T Consensus 172 W~~tpG~~~~~~~-~~~E~~~ILeG~v~lt~~~G-~-----~~~~~aGD~~~ 216 (238)
T 3myx_A 172 WDSTPYERISRPH-KIHELMNLIEGRVVLSLENG-S-----SLTVNTGDTVF 216 (238)
T ss_dssp EEECCEEBCCEEC-SSCEEEEEEECCEEEEETTS-C-----EEEECTTCEEE
T ss_pred EEeCCCEEECCcC-CCCEEEEEEEeEEEEEeCCC-C-----EEEECCCCEEE
Confidence 3455655332111 34689999999999876544 3 26899999874
No 217
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=20.18 E-value=1.8e+02 Score=24.02 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=34.7
Q ss_pred CccCeEEEEEeeEEEEEEeeCCeeeeeeeeEeCCCCeechhhhhhhcCCCCCCCCCCcceEEEEcceEEEEEEeH
Q 002414 500 DRIDGMLFVMRGKLWSATMVGGRMSFQSGFYLSAGDYYGEELISWALDPNSSHYLPISSRTVRAATEVEAFVLMS 574 (926)
Q Consensus 500 d~~~~ly~I~~G~v~v~~~~~~~~~~~~v~~l~~G~~FGe~~ll~~l~~~~~~~~~~r~~tv~A~t~~~ll~L~~ 574 (926)
+...++++|++|.+.+... +. ...+++||.+= +++. ..-.+.+.+++.++.++.
T Consensus 48 ~~~~e~~~v~~G~~~~~~~-~~------~~~l~~Gd~~~-------ip~~-------~~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 48 ADTDEVFIVMEGTLQIAFR-DQ------NITLQAGEMYV-------IPKG-------VEHKPMAKEECKIMIIEP 101 (102)
T ss_dssp TTCCEEEEEEESEEEEECS-SC------EEEEETTEEEE-------ECTT-------CCBEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEeCEEEEEEC-CE------EEEEcCCCEEE-------ECCC-------CeEeeEcCCCCEEEEEEc
Confidence 3337999999999987653 32 26788998752 2222 123455557888887753
Done!