BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002415
(926 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A
OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
Length = 1309
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/921 (53%), Positives = 648/921 (70%), Gaps = 31/921 (3%)
Query: 7 QQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD 66
++++W V+ELTK AQ+ DP WA QLSS L A LPSTELA ++VS+ICWD
Sbjct: 6 RRTVWDCVIELTKMAQENCVDPRLWASQLSSNLKFFA----VELPSTELAEVIVSYICWD 61
Query: 67 NHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126
N+VPI WKFLE+A+ LK+V P +VLALL+ RV+ R AAYR+YLE L R+ F+
Sbjct: 62 NNVPIVWKFLERAMALKLVSPLVVLALLADRVVPTRSTQQAAYRIYLELLKRNMFTIKDH 121
Query: 127 VNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFAS 186
++GP+Y K+M S+ ++L LS++F L + GVLLVEFVF +V QLLDA+L DEGLLE +
Sbjct: 122 ISGPHYQKVMISVSNILRLSELFDLDTSKPGVLLVEFVFKMVSQLLDAALSDEGLLELSQ 181
Query: 187 DKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLA 246
D + +W + QDMEID + + ++++ E L NT MAIELI EFL+N V +R+LYL
Sbjct: 182 DSSSQWLVKSQDMEIDAPERY-NEKTGSLEKLQSLNTIMAIELIAEFLRNTVIARLLYLV 240
Query: 247 HMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECH 306
N S W F+++++LL S+AL++SKV+ LLQL S+ R SK ++ +
Sbjct: 241 SSNRASKWHEFVQKVQLLGENSSALKHSKVLNSGDLLQLISNRRFGYSYDSKVTSARKSN 300
Query: 307 AVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVN 366
A+ GSL S AG C+G S S+LWLP+DL EDAMDG QV TSA+EI+TGL K L+ +N
Sbjct: 301 AIVDFGSLSSYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEIN 360
Query: 367 GTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELI 426
G+TWHDTFLGLWIAALRL+QRERDP EGP+PR+D+ LCM L + L VA++IEE + E +
Sbjct: 361 GSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGKYESV 420
Query: 427 DETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFIS 486
E + R DLVTSLQ+LGDF +L PP V S AN+AA KAI+F+S
Sbjct: 421 ME----------------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLS 464
Query: 487 GLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPC 546
G VG ++ ++M + +C GNMRHLIVEACIARN+LD SAY WPGYVN NQ+P
Sbjct: 465 GGNVGKSCFDVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQ 523
Query: 547 SIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLC 606
S+ ++ WSS +KG+PL ++ N LV PASSLAE+EK++E+AV GSDDEKI AATVLC
Sbjct: 524 SLPNEVPCWSSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLC 583
Query: 607 GASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIF 666
GASL RGW++QE+T+ ++ +LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIF
Sbjct: 584 GASLTRGWNIQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIF 643
Query: 667 SLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPP 726
SLHG VP LA +LMPICE FGS P+ SWTL SGE S Y+VFSNAFT+L++LWRF+ PP
Sbjct: 644 SLHGMVPQLACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPP 703
Query: 727 LEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIK-FSTDPIFMDS 785
+E D+P V SQL+PE+LL VRNS L S +D+ + KR S+ + S P+F+DS
Sbjct: 704 IEHGVGDVPTVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDS 762
Query: 786 FPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNS 845
FPKLK WYRQ++ CIA+TL+GL HG+ VH V+ALL F K+ S T L SG+++S
Sbjct: 763 FPKLKVWYRQHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSS 821
Query: 846 SGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLSNILKEGRNAFV 905
SG+ ED +I+ + PAWDIL+A P+V+DAAL AC HGRLSPR+LATGL ++ F+
Sbjct: 822 SGAASEDSNIRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLAD-----FL 876
Query: 906 IESLSSRCDIYLKDESTLGAW 926
SL++ Y E + G W
Sbjct: 877 PASLATIVS-YFSAEVSRGVW 896
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B
OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
Length = 1275
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/946 (54%), Positives = 642/946 (67%), Gaps = 106/946 (11%)
Query: 1 MAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLV 60
MA + Q SLW V L ++AQ++N DPL WA+QL TL SA G +LPS +LA LV
Sbjct: 1 MAPSEFQPSLWESVTSLIRSAQEKNVDPLHWALQLRLTLASA----GISLPSPDLAQFLV 56
Query: 61 SHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHA 120
+HI W+NH P++WK LEKA+++ IVPP LVLALLS RVI NR+LHPAAYRLY+E L RHA
Sbjct: 57 THIFWENHSPLSWKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRHA 116
Query: 121 FSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEG 180
FSF L+ P Y K MNSIDD+L+LS+ FG++ E G +L+ FVFS+VW+LLDASLD+EG
Sbjct: 117 FSFMPLIRAPGYHKTMNSIDDILHLSETFGVQDQEPGSILLAFVFSIVWELLDASLDEEG 176
Query: 181 LLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTS 240
LLE S+K KWP+ P DM++DG++ + KR+E+H+ L +ANT MAIELI EFLQNKVTS
Sbjct: 177 LLELTSNKRSKWPSSPHDMDLDGLENSV-KRNENHDALEKANTEMAIELIQEFLQNKVTS 235
Query: 241 RILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTA 300
RIL+LA NM +SKT
Sbjct: 236 RILHLASQNM---------------------------------------------ESKTI 250
Query: 301 PQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVK 360
P+ E HA+ GS ++L TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVK
Sbjct: 251 PRGEFHAIVSSGSKLAL------TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVK 304
Query: 361 ALQVVNGTTWHDTFLG-------------------LWIAALRLLQRERDPSEGPVPRIDS 401
ALQ N T+WHD FL ++ L +L ERDP EGPVPR D+
Sbjct: 305 ALQAANSTSWHDAFLALWLAALRLVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDT 364
Query: 402 SLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFE 461
LC++LSVT L VA+IIEEEES+ ID+T SPSN K+K+ G+ R+ L+ SLQ LGD+E
Sbjct: 365 FLCVLLSVTPLAVANIIEEEESQWIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYE 422
Query: 462 DMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIA 521
+LTPP V+S+ANQAAAKAIMFISG+T NG YE+ SM+ A+ C C
Sbjct: 423 SLLTPPRSVQSVANQAAAKAIMFISGITNSNGSYENTSMSESASGC-----------CKV 471
Query: 522 R-NLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSL 580
R +L ++ G + C+I S WS +MKGSPLTPSLTN+L+ TPASSL
Sbjct: 472 RFSLFTLKMFVVMGVY-------LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSL 520
Query: 581 AEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSE 640
AEIEK+YE+A GS+DEKI A++LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS
Sbjct: 521 AEIEKMYEVATTGSEDEKIAVASILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSY 580
Query: 641 SHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSG 700
SHLI A LN LLVGIS +DC+ IFSLHG VPLLA ALMPICE FGS +PN +WTL +G
Sbjct: 581 SHLINSAPFLNVLLVGISPIDCVHIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTG 640
Query: 701 EEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTS 760
E S +AVFS AFT+L+RLWRF PPL+ + D+P V Q SPEYLLLVRN +L FG S
Sbjct: 641 ELISSHAVFSTAFTLLLRLWRFDHPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKS 700
Query: 761 PKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDAL 820
PKD+M +RFSK I S DPIFMDSFP+LK+WYRQ++EC+AS L+ L G+ VH IVD+L
Sbjct: 701 PKDRMARRRFSKVIDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSL 760
Query: 821 LTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACA 880
L+ MF+K N+ G+ + +SGS++ S SG +D S +LK+PAWDILEA PFVLDAAL ACA
Sbjct: 761 LSMMFKKANKGGSQSLTPSSGSSSLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACA 820
Query: 881 HGRLSPRELATGLSNILKEGRNAFVIESLSSRCDIYLKDESTLGAW 926
HG LSPRELATGL IL + F+ +L + Y E T G W
Sbjct: 821 HGSLSPRELATGL-KILAD----FLPATLGTMVS-YFSSEVTRGLW 860
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,687,984
Number of Sequences: 539616
Number of extensions: 13367295
Number of successful extensions: 32400
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 32385
Number of HSP's gapped (non-prelim): 11
length of query: 926
length of database: 191,569,459
effective HSP length: 127
effective length of query: 799
effective length of database: 123,038,227
effective search space: 98307543373
effective search space used: 98307543373
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)