Query 002416
Match_columns 926
No_of_seqs 42 out of 44
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 23:31:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11277 Med24_N: Mediator com 94.2 2.9 6.2E-05 52.6 19.3 339 21-464 13-355 (990)
2 PRK02866 cyanate hydratase; Va 86.0 1.2 2.5E-05 45.0 4.8 93 55-152 30-129 (147)
3 TIGR00673 cynS cyanate hydrata 66.9 3.1 6.6E-05 42.3 1.5 54 98-152 72-132 (150)
4 PF10755 DUF2585: Protein of u 26.2 31 0.00068 35.8 1.0 19 861-879 73-91 (165)
5 PF02560 Cyanate_lyase: Cyanat 26.0 5.7 0.00012 36.4 -3.7 46 104-150 8-53 (73)
6 KOG0818 GTPase-activating prot 25.5 2.6E+02 0.0057 34.0 8.2 130 109-238 220-353 (669)
7 PRK00944 hypothetical protein; 25.2 33 0.00072 36.4 1.1 15 860-874 101-115 (195)
8 PF01456 Mucin: Mucin-like gly 24.3 21 0.00046 34.3 -0.5 14 80-93 2-15 (143)
9 cd00559 Cyanase_C Cyanase C-te 24.2 7.9 0.00017 35.2 -3.1 47 104-151 4-50 (69)
10 KOG1608 Protein transporter of 21.1 68 0.0015 36.5 2.4 58 135-197 101-158 (374)
11 PF04695 Pex14_N: Peroxisomal 20.8 1.2E+02 0.0027 29.8 3.9 45 228-293 7-51 (136)
12 PF14210 DUF4322: Domain of un 20.7 72 0.0016 29.0 2.1 21 806-826 4-25 (66)
No 1
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans. It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
Probab=94.15 E-value=2.9 Score=52.55 Aligned_cols=339 Identities=18% Similarity=0.197 Sum_probs=188.2
Q ss_pred HHhhCCCchhHHHHHHHHhhhcCCCCCCCCCcHHHHHHHHHhhhcc-CCCcchHHHHHHHHhcCCCChHHHHHhhhcccc
Q 002416 21 AQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWD-NHVPITWKFLEKALTLKIVPPSLVLALLSTRVI 99 (926)
Q Consensus 21 AQer~~~PLlWA~evas~l~sa~~g~Gv~LPS~eLA~~LVs~lCf~-nn~p~~WKfLe~AlssrLv~PL~vLALLSsRVI 99 (926)
|=.++-+|..|++-+=..+.. |++-=-.+||+.|+.+..-. ...|-+=.||++|+++++|+...||.-++---
T Consensus 13 aW~ERw~d~~w~i~iK~~~~~-----g~~~d~~~LAe~LL~qa~iG~~Pn~LiLSYLk~al~sqlvs~~~vl~~I~k~~- 86 (990)
T PF11277_consen 13 AWRERWTDIQWGINIKKIIPR-----GVSGDIYNLAECLLQQAFIGPSPNPLILSYLKYALSSQLVSYAAVLEAISKFD- 86 (990)
T ss_pred HHHhcCChhhHHHHHHHHccC-----CCcccHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHhcchhHHHHHHHHhhcc-
Confidence 334456789999999888864 33323367999999987663 36678999999999999999999887664321
Q ss_pred cCcccchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhccccc
Q 002416 100 SNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDE 179 (926)
Q Consensus 100 P~R~~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~ 179 (926)
...+|.--.=-||++...-= ...|+-| .|-++ +--=+.++|.-|+-+.-.-.
T Consensus 87 --~f~k~~c~~~ll~~l~~~~~------~~sC~gk-------------------~EE~i-L~~Alls~v~WLL~~~~~~l 138 (990)
T PF11277_consen 87 --DFSKPHCINALLELLESIID------GLSCRGK-------------------AEECI-LCRALLSLVHWLLQCYEYSL 138 (990)
T ss_pred --ccchhHHHHHHHHHHHHhcC------CcccCCc-------------------chHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 13445555555555543111 1111111 22233 22224455544443321100
Q ss_pred CcccccccCCCCCCCCCCcccccCCCCccccccchhhhhhcchhHHHHHHHHHHHhhhhHHHHHHHHhhcCCCchhhHHH
Q 002416 180 GLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIE 259 (926)
Q Consensus 180 Gl~~~t~~~~~~~~~~~qdM~iD~~~~~~~kr~e~~E~Lrk~NT~mAiEvi~~~l~nK~ts~iLrL~~~Nmpe~w~~f~Q 259 (926)
+ +.+|+. +. ..++.+ +.-+..+++++++++++...+||+|+.+=||-|+...|
T Consensus 139 -------~-------~~~e~~----~~----~~~~e~-----~l~~~~~~L~~i~~s~f~~aLL~Iak~ee~e~w~~v~q 191 (990)
T PF11277_consen 139 -------E-------KLRENN----EL----SAEQEE-----ILEKCCQRLEKILESTFLRALLYIAKLEEPESWNEVEQ 191 (990)
T ss_pred -------H-------HHhhcC----CC----cchHHH-----HHHHHHHHHHHHHcCchHHHHHHHhhhccHhHHHHHHH
Confidence 0 011111 10 122333 34567899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhccCCChHHHHHHhhhcccc--cCCCc-cccCccceeeeccCCccccccccccCccccccchhhHHh
Q 002416 260 RLRLLALKSAALRNSKVITPEALLQLASDTRGD--LGRKS-KTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLF 336 (926)
Q Consensus 260 RLqllea~s~al~~~k~~~~~~l~~L~~~~~~v--~~~~~-k~~~~~~~~~~~~~~s~~s~~g~~~Gas~SalWlPfDiy 336 (926)
+..-|+...... .-+..+..+.+-..++... ...+- ..+..+..+.+ .++ =..+ |+
T Consensus 192 ~~~~l~~~l~~~--~~~~~~~tL~~~l~kl~sl~~~~~~m~~v~~~~~~e~~---~~s------------VqaL----I~ 250 (990)
T PF11277_consen 192 KCAKLKNSLSNS--GFVKSNVTLRDQLEKLASLEKSIPSMKPVNSEQLSETI---FPS------------VQAL----IA 250 (990)
T ss_pred HHHHHHHHhccc--ccccCchHHHHHHHHHHHHHhcCccccCCCcccCCCCC---cch------------HHHH----HH
Confidence 999998833321 1112344444444443331 10110 01111111100 000 0122 33
Q ss_pred hhhccCCccccchhhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhcCCCCCCCCCccccchhhhhhhhhhhHhh
Q 002416 337 LEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVAD 416 (926)
Q Consensus 337 lEdaMDG~qv~~tSaiEiLt~liKtLQ~vN~asW~dtFl~LWiaaLRLVQReRdp~EGPiPhldsrLCMLLsI~pLaia~ 416 (926)
+|-.| +.++-++-+.+-...+|.+.+=++.+-|.=+|=|.+=-.- |..||. -|++.| +.+-|=|=.
T Consensus 251 vE~ll-----Npt~dtq~lVeqL~mlqrlk~~~~~~ly~EIirACfl~L~---e~~~ts---~E~~w~---AFtFlKlPq 316 (990)
T PF11277_consen 251 VEVLL-----NPTSDTQQLVEQLMMLQRLKGIPNPRLYCEIIRACFLGLI---ESPETS---EELKWC---AFTFLKLPQ 316 (990)
T ss_pred HHHHH-----ccCccHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhhc---cCCCCC---cchhhh---hhhhhhHHH
Confidence 44333 4577888888888899999999999999999987765332 222333 455655 343333334
Q ss_pred HHHhhhhhhcccccCCCCCCCCCCCCCccchhhhHHhhhhhccccccc
Q 002416 417 IIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDML 464 (926)
Q Consensus 417 IieEe~~~~i~~~e~~~~~~~~~k~~~~~~R~~LisSLQvLG~y~gLL 464 (926)
||.+=-... .+. +.+++ ++.-..+++.++..|=++..||
T Consensus 317 Il~~L~~~~------~~~-~~~d~--~~~~~~dl~~Afe~Ll~~~pLL 355 (990)
T PF11277_consen 317 ILKQLHALS------RGD-KPQDK--IAEYSEDLVEAFELLLQLTPLL 355 (990)
T ss_pred HHHHHHHhc------cCC-Ccccc--cccccHHHHHHHHHHHccchhh
Confidence 443322211 000 00001 2344556666666666666655
No 2
>PRK02866 cyanate hydratase; Validated
Probab=86.01 E-value=1.2 Score=45.04 Aligned_cols=93 Identities=20% Similarity=0.225 Sum_probs=61.4
Q ss_pred HHHHHHHhhhccCCCcchHHHHHHHHhcCCCChHHHHHhhhcccccCcc-------cchhHHHHHHHHhhhccccccccc
Q 002416 55 LAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQ-------LHPAAYRLYLEFLTRHAFSFASLV 127 (926)
Q Consensus 55 LA~~LVs~lCf~nn~p~~WKfLe~AlssrLv~PL~vLALLSsRVIP~R~-------~qPeAYRLYLELL~r~aFs~~~~i 127 (926)
+.+.-+..+|...+.++. ---++++..|=.|--+.+.|. ..|.|- .-|.-|||| |.+..|+-+++..|
T Consensus 30 ~S~v~vaaa~lGQ~~ls~--e~A~kla~~LgL~~~~~~~l~--~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~~i 104 (147)
T PRK02866 30 LSEVWVTAALLGQMTLPA--EEAEKVAELLGLDEDAVALLQ--EVPYRGSLPPAVPTDPLIYRFY-EMVQVYGTTLKALI 104 (147)
T ss_pred CCHHHHHHHHhCCCCCCH--HHHHHHHHHhCCCHHHHHHHh--cCCcCCCCCCCCCCCcHHHHHH-HHHHHhhHHHHHHH
Confidence 346666677776666641 111112222222223455555 478884 468899999 99999999999998
Q ss_pred CCCchhHHHhcHHHHhccccccCCc
Q 002416 128 NGPNYDKIMNSIDDVLNLSQIFGLK 152 (926)
Q Consensus 128 ~~pn~~kimkSID~~L~LS~~~g~~ 152 (926)
+-.-=|-||..||=-+.+-+.-+-.
T Consensus 105 ~E~FGDGIMSAIdf~~~v~k~~dp~ 129 (147)
T PRK02866 105 HEKFGDGIMSAIDFKLDVDKVEDPK 129 (147)
T ss_pred HHHhCCceeeeeeeceeeeeccCCC
Confidence 8666688999999877777655444
No 3
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=66.90 E-value=3.1 Score=42.27 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=43.9
Q ss_pred cccCcc-------cchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCCc
Q 002416 98 VISNRQ-------LHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLK 152 (926)
Q Consensus 98 VIP~R~-------~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~~ 152 (926)
+.|.|- .-|.-|||| |.+..|+-+++..|+-.-=|-||..||=-+.+.+.-+-.
T Consensus 72 ~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~~i~E~FGDGIMSAIdF~~~v~k~~dp~ 132 (150)
T TIGR00673 72 MAPLRGCIDPVIPTDPTMYRFY-EMLQVYGTTLKAVVHEKFGDGIMSAIDFKLDVEKVADPG 132 (150)
T ss_pred cCCCCCCCCCCCCCCchHHHHH-HHHHHhhHHHHHHHHHHhCcceeeeeeeceeeeeecCCC
Confidence 468885 578899999 999999999999988666688999999877777655443
No 4
>PF10755 DUF2585: Protein of unknown function (DUF2585); InterPro: IPR019691 This family is conserved in Proteobacteria. The function is not known, but it is thought to be a transmembrane protein. ; GO: 0005886 plasma membrane
Probab=26.23 E-value=31 Score=35.83 Aligned_cols=19 Identities=42% Similarity=0.919 Sum_probs=15.6
Q ss_pred hhHHhhhhhhHHHHHHhhh
Q 002416 861 AWDILEATPFVLDAALAAC 879 (926)
Q Consensus 861 AWdiLEAvPfVlda~LTAC 879 (926)
+|||+|..|||+|--=+|-
T Consensus 73 ~WEi~ENsp~II~rYR~~T 91 (165)
T PF10755_consen 73 AWEIVENSPFIIERYRAAT 91 (165)
T ss_pred hhhhhhCCHHHHHHHHHhh
Confidence 9999999999998654443
No 5
>PF02560 Cyanate_lyase: Cyanate lyase C-terminal domain; InterPro: IPR003712 Some bacteria can overcome the toxicity of environmental cyanate by hydrolysis of cyanate. This reaction is catalyzed by cyanate lyase (also known as cyanase) []. Cyanate lyase is found in bacteria and plants and catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. The cyanate lyase monomer is composed of two domains. The N-terminal domain shows structural similarity to the DNA-binding alpha-helix bundle motif. The C-terminal domain has an 'open fold' with no structural homology to other proteins. The dimer structure reveals the C-terminal domains to be intertwined, and the decamer is formed by a pentamer of these dimers. The active site of the enzyme is located between dimers and is comprised of residues from four adjacent subunits of the homodecamer []. ; GO: 0008824 cyanate hydratase activity, 0009439 cyanate metabolic process; PDB: 2IV1_B 2IUO_A 2IVQ_B 1DW9_A 1DWK_E 2IVG_G 2IU7_J 2IVB_A.
Probab=26.04 E-value=5.7 Score=36.40 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccC
Q 002416 104 LHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFG 150 (926)
Q Consensus 104 ~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g 150 (926)
+-|..|||| |.+..|+-+++..++-.-=|-||..||=-+.+-+.-+
T Consensus 8 tDP~iYR~y-E~v~vYG~~~K~li~E~FGDGIMSAIdF~~~v~k~~d 53 (73)
T PF02560_consen 8 TDPLIYRLY-EIVQVYGPAIKALIHEKFGDGIMSAIDFKMDVEKVED 53 (73)
T ss_dssp -SHHHHHHH-HHHHHHHHHHHHHHHHHT-SEEEEEEEEEEEEEEEE-
T ss_pred CCCeEeeee-hhhHhhCHHHHHHHHHhhCcceEEEeeEEEEEEEeeC
Confidence 579999999 8999999999888776555888888886666555443
No 6
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=25.50 E-value=2.6e+02 Score=34.02 Aligned_cols=130 Identities=14% Similarity=0.064 Sum_probs=79.5
Q ss_pred HHHHHHHhhhcccccccccCC--CchhHHHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhcccccCcc--cc
Q 002416 109 YRLYLEFLTRHAFSFASLVNG--PNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLL--EF 184 (926)
Q Consensus 109 YRLYLELL~r~aFs~~~~i~~--pn~~kimkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~Gl~--~~ 184 (926)
|..+-|+..|.+|-+...... .+.|.|+--+-+.|+||+.-.......-.+-=.-|+-++--+.|-+=..|-=- .+
T Consensus 220 ~e~~y~vtDR~~f~lcgrKpDHkngqhfiIP~~~~sld~se~~k~ar~klq~l~n~~FeeL~mD~yDEvdRRE~eavW~~ 299 (669)
T KOG0818|consen 220 VEIQYELTDRLAFYLCGRKPDHKNGQHFIIPQMADSLDLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETDAVWLA 299 (669)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCcceeccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhhhhhHHhh
Confidence 445678999999988664433 23388888888889998877666555555555566677777777665443321 12
Q ss_pred cccCCCCCCCCCCcccccCCCCccccccchhhhhhcchhHHHHHHHHHHHhhhh
Q 002416 185 ASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKV 238 (926)
Q Consensus 185 t~~~~~~~~~~~qdM~iD~~~~~~~kr~e~~E~Lrk~NT~mAiEvi~~~l~nK~ 238 (926)
|+.+...-+..+-.-=+..+--++.-|++.|.+|.|-|..-=--+|-.++.|-|
T Consensus 300 tqnhsal~a~~~tvpFLP~nP~~SAtRNQgRQKLArFn~~eFt~LliDil~dak 353 (669)
T KOG0818|consen 300 TQNHSALVTETTTVPFLPVNPEYSATRNQGRQKLARFNAHEFATLLIDILSDAK 353 (669)
T ss_pred hccchhhcccCccccccCCCchhhhhhhhhhHHHhhcCHHHHHHHHHHHHHHHH
Confidence 211111111112122245556778899999999999997644445555555544
No 7
>PRK00944 hypothetical protein; Provisional
Probab=25.23 E-value=33 Score=36.38 Aligned_cols=15 Identities=33% Similarity=1.086 Sum_probs=13.7
Q ss_pred chhHHhhhhhhHHHH
Q 002416 860 PAWDILEATPFVLDA 874 (926)
Q Consensus 860 pAWdiLEAvPfVlda 874 (926)
.||||+|..|||+|-
T Consensus 101 ~aWEi~ENsp~II~R 115 (195)
T PRK00944 101 SAWELLENSPLIIER 115 (195)
T ss_pred hhhHhhcCCHHHHHH
Confidence 589999999999984
No 8
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=24.31 E-value=21 Score=34.31 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=8.7
Q ss_pred HhcCCCChHHHHHh
Q 002416 80 LTLKIVPPSLVLAL 93 (926)
Q Consensus 80 lssrLv~PL~vLAL 93 (926)
|-||||+.|+||||
T Consensus 2 mtcRLLCalLvlaL 15 (143)
T PF01456_consen 2 MTCRLLCALLVLAL 15 (143)
T ss_pred chHHHHHHHHHHHH
Confidence 45666666666666
No 9
>cd00559 Cyanase_C Cyanase C-terminal domain. Cyanase (Cyanate lyase) is responsible for the hydrolysis of cyanate. It catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide. This allows organisms that possess the enzyme to overcome the toxicity of environmental cyanate and to use cyanate as a source of nitrogen for growth. This enzyme is a homodecamer, formed by five dimers. Each monomer is composed of two domains, an N-terminal helix-turn-helix and this structurally unique C-terminal domain.
Probab=24.19 E-value=7.9 Score=35.21 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=37.9
Q ss_pred cchhHHHHHHHHhhhcccccccccCCCchhHHHhcHHHHhccccccCC
Q 002416 104 LHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGL 151 (926)
Q Consensus 104 ~qPeAYRLYLELL~r~aFs~~~~i~~pn~~kimkSID~~L~LS~~~g~ 151 (926)
.-|.-|||| |.+..|+-+++..++-.-=|-||..||=-+.+-+.-+-
T Consensus 4 tDP~iYRly-E~v~vYG~~~K~li~E~FGDGIMSAIdF~~~v~k~~dp 50 (69)
T cd00559 4 TDPLIYRFY-EIVQVYGPTLKALIHEKFGDGIMSAIDFKLDVDKVEDP 50 (69)
T ss_pred CCceeeehH-HHHHHhhHHHHHHHHHHcCCceeeeEEeeeeEEeccCC
Confidence 468999999 88899999999888866668899999877776655443
No 10
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.06 E-value=68 Score=36.53 Aligned_cols=58 Identities=36% Similarity=0.599 Sum_probs=44.9
Q ss_pred HHhcHHHHhccccccCCccccCCeeehhHHHHHHHHHhhhcccccCcccccccCCCCCCCCCC
Q 002416 135 IMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQ 197 (926)
Q Consensus 135 imkSID~~L~LS~~~g~~~~e~G~~vV~Fvfsiv~~LlDa~LdD~Gl~~~t~~~~~~~~~~~q 197 (926)
+.+-|..-|||||.=-..--|.|++++.++||+||.-- +|-.||.+ +++.+.|...|+
T Consensus 101 vLDKIsKr~hlSK~k~~kFnESgql~~Fy~~S~vwg~~--ili~E~yl---~~p~~lW~~yPh 158 (374)
T KOG1608|consen 101 VLDKISKRLHLSKVKHSKFNESGQLVAFYLFSCVWGFY--ILISEGYL---SDPTSLWEGYPH 158 (374)
T ss_pred HHHHHHHHhhhhHhhhhhhccCCeeeehhhHHhhhhhe--eeeecccc---cChHHHHhcCCC
Confidence 44556677999999888889999999999999999753 44446643 466688988663
No 11
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.75 E-value=1.2e+02 Score=29.78 Aligned_cols=45 Identities=22% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHHHHhhhhHHHHHHHHhhcCCCchhhHHHHHHHHHHhHHHhhhccCCChHHHHHHhhhccccc
Q 002416 228 ELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDL 293 (926)
Q Consensus 228 Evi~~~l~nK~ts~iLrL~~~Nmpe~w~~f~QRLqllea~s~al~~~k~~~~~~l~~L~~~~~~v~ 293 (926)
|.=-+||+|.++ +|-| +-+|.+||+. |+|+.+++++++......-
T Consensus 7 ~~A~~FL~~p~V--------~~sp-----~~~k~~FL~s--------KGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 7 EQAVKFLQDPKV--------RNSP-----LEKKIAFLES--------KGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHCTTTC--------CCS------HHHHHHHHHH--------CT--HHHHHHHHHHHT--S
T ss_pred HHHHHHhCCccc--------ccCC-----HHHHHHHHHc--------CCCCHHHHHHHHHhcCCcc
Confidence 444578888775 4556 8899999998 8999999999998877644
No 12
>PF14210 DUF4322: Domain of unknown function (DUF4322)
Probab=20.69 E-value=72 Score=28.99 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.1
Q ss_pred cccCCChHHHHHHHHHHHH-HH
Q 002416 806 GLVHGTSVHLIVDALLTKM-FR 826 (926)
Q Consensus 806 gl~~g~pvhq~~~~lL~mm-~~ 826 (926)
++-|-+-++||..+||+|+ |+
T Consensus 4 ~~phqnn~qQIgyKLlSml~Fk 25 (66)
T PF14210_consen 4 DLPHQNNIQQIGYKLLSMLNFK 25 (66)
T ss_pred CCCchhHHHHHHHHHHHHHccc
Confidence 4668899999999999999 63
Done!