Query 002416
Match_columns 926
No_of_seqs 42 out of 44
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 01:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dw9_A Cyanate lyase; cyanate 70.6 0.88 3E-05 44.8 0.0 91 55-150 38-135 (156)
2 2i5o_A DNA polymerase ETA; zin 32.1 22 0.00076 27.9 2.0 21 606-627 15-36 (39)
3 3e2u_E CAP-Gly domain-containi 29.2 10 0.00034 30.6 -0.3 7 682-688 25-31 (42)
4 2hqh_E Restin; beta/BETA struc 24.6 13 0.00046 27.3 -0.3 7 682-688 8-14 (26)
5 2pzo_E CAP-Gly domain-containi 23.7 15 0.0005 29.7 -0.3 7 682-688 25-31 (42)
6 3bee_A Putative YFRE protein; 19.3 3.2E+02 0.011 23.1 7.2 82 52-144 5-91 (93)
7 1k3y_A GSTA1-1, glutathione S- 17.9 99 0.0034 29.0 4.0 25 781-805 172-198 (221)
8 2w84_A Peroxisomal membrane pr 17.9 1.6E+02 0.0053 26.0 4.8 38 231-289 22-59 (70)
9 3lsz_A Glutathione S-transfera 16.2 41 0.0014 31.5 0.9 33 782-814 188-222 (225)
10 3ff5_A PEX14P, peroxisomal bio 15.8 2.1E+02 0.0073 24.0 4.9 36 231-287 17-52 (54)
No 1
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=70.56 E-value=0.88 Score=44.81 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=63.1
Q ss_pred HHHHHHHhhhccCCCcchHHHHHHHHhcCCCChHHHHHhhhcccccCcc-------cchhHHHHHHHHhhhccccccccc
Q 002416 55 LAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQ-------LHPAAYRLYLEFLTRHAFSFASLV 127 (926)
Q Consensus 55 LA~~LVs~lCf~nn~p~~WKfLe~AlssrLv~PL~vLALLSsRVIP~R~-------~qPeAYRLYLELL~r~aFs~~~~i 127 (926)
+.+..+..+|...+.|+ +...++.-. -|=.|--.++.| .++|.|- .-|.-||+| |.+..|+-+++..|
T Consensus 38 ~S~v~vtaa~lGQ~~ls-~e~A~kLa~-~LgL~~e~~~~l--~~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~li 112 (156)
T 1dw9_A 38 LAEAFVTAALLGQQALP-ADAARLVGA-KLDLDEDSILLL--QMIPLRGCIDDRIPTDPTMYRFY-EMLQVYGTTLKALV 112 (156)
T ss_dssp SCHHHHHHHHTTSSCCC-HHHHHHHHH-HTTCCHHHHHHT--TSBCCCCCCSSSSCCSHHHHHHH-HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCC-HHHHHHHHH-HhCcCHHHHHHH--hcCCcCCCCCCCCCCCCeehhHH-HHHHHhhHHHHHHH
Confidence 44677777777777776 454444332 233344445666 4678884 568899999 99999999999888
Q ss_pred CCCchhHHHhcHHHHhccccccC
Q 002416 128 NGPNYDKIMNSIDDVLNLSQIFG 150 (926)
Q Consensus 128 ~~pn~~kimkSID~~L~LS~~~g 150 (926)
+-.-=|-||..||=-+.+-+.-+
T Consensus 113 ~E~FGDGIMSAIdF~~~v~k~~d 135 (156)
T 1dw9_A 113 HEKFGDGIISAINFKLDVKKVAD 135 (156)
T ss_dssp HHHTCSEEEEEEEEEEEEEEEEC
T ss_pred HHHcCcceEeeeeeeeeeEeecC
Confidence 76655888988886666655443
No 2
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=32.10 E-value=22 Score=27.89 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=18.8
Q ss_pred cccccccccchhhHH-HHHHHHh
Q 002416 606 CGASLVRGWSVQENT-ILFIIKL 627 (926)
Q Consensus 606 CGASL~RGWniQEh~-v~~vvkL 627 (926)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred ccCcCCc-ccccchhhHHHHHHH
Confidence 8988876 9999999 9998887
No 3
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=29.22 E-value=10 Score=30.65 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.5
Q ss_pred hhhhhcC
Q 002416 682 ICEVFGS 688 (926)
Q Consensus 682 iCEvFGS 688 (926)
+|||||-
T Consensus 25 ~CEVFGH 31 (42)
T 3e2u_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cceeccc
Confidence 6899983
No 4
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=24.62 E-value=13 Score=27.34 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=6.0
Q ss_pred hhhhhcC
Q 002416 682 ICEVFGS 688 (926)
Q Consensus 682 iCEvFGS 688 (926)
+||+||-
T Consensus 8 ~CE~FGH 14 (26)
T 2hqh_E 8 ICEMFGH 14 (26)
T ss_dssp TTTEESS
T ss_pred HHHHhCc
Confidence 7999984
No 5
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=23.71 E-value=15 Score=29.72 Aligned_cols=7 Identities=71% Similarity=1.621 Sum_probs=5.8
Q ss_pred hhhhhcC
Q 002416 682 ICEVFGS 688 (926)
Q Consensus 682 iCEvFGS 688 (926)
||||||-
T Consensus 25 ~CEvFGH 31 (42)
T 2pzo_E 25 ICEMFGH 31 (42)
T ss_dssp TTTEESS
T ss_pred cccccCc
Confidence 7999984
No 6
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=19.33 E-value=3.2e+02 Score=23.14 Aligned_cols=82 Identities=13% Similarity=0.051 Sum_probs=55.2
Q ss_pred cHHHHHHHHHhhhccCC---CcchHHHHHHHHhcCCC--ChHHHHHhhhcccccCcccchhHHHHHHHHhhhcccccccc
Q 002416 52 STELAHLLVSHICWDNH---VPITWKFLEKALTLKIV--PPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASL 126 (926)
Q Consensus 52 S~eLA~~LVs~lCf~nn---~p~~WKfLe~AlssrLv--~PL~vLALLSsRVIP~R~~qPeAYRLYLELL~r~aFs~~~~ 126 (926)
.+++--.+...+++.++ ++..-+++++|+...=- -.+.+|+...-+ +..+.+|.+.|-.+|.+ ..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~------~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDS------ND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTC------CC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh------CC
Confidence 34544444445555555 67788888888875433 334445444433 67788999999999986 23
Q ss_pred cCCCchhHHHhcHHHHhc
Q 002416 127 VNGPNYDKIMNSIDDVLN 144 (926)
Q Consensus 127 i~~pn~~kimkSID~~L~ 144 (926)
. .|++..|.++|..+-+
T Consensus 75 ~-~~~~~~i~~~I~~A~~ 91 (93)
T 3bee_A 75 P-NLDRVTIIESINKAKK 91 (93)
T ss_dssp T-TCCHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHh
Confidence 3 7899999999998753
No 7
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...
Probab=17.94 E-value=99 Score=29.03 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=17.8
Q ss_pred cccccchhhHHHH--hhhhhHHHHhhh
Q 002416 781 IFMDSFPKLKRWY--RQNEECIASTLT 805 (926)
Q Consensus 781 v~~DSFPKLk~wY--~q~q~Ciastls 805 (926)
..++.||+|++|| .+....+..++.
T Consensus 172 ~~~~~~p~l~~w~~~i~~~p~~~~~~~ 198 (221)
T 1k3y_A 172 SLISSFPLLKALKTRISNLPTVKKFLQ 198 (221)
T ss_dssp TTTTTCHHHHHHHHHHHHSHHHHHHHS
T ss_pred hhhhcCchHHHHHHHHHhCHHHHHHHH
Confidence 3468899999999 444556666654
No 8
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=17.86 E-value=1.6e+02 Score=26.00 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCchhhHHHHHHHHHHhHHHhhhccCCChHHHHHHhhhc
Q 002416 231 GEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDT 289 (926)
Q Consensus 231 ~~~l~nK~ts~iLrL~~~Nmpe~w~~f~QRLqllea~s~al~~~k~~~~~~l~~L~~~~ 289 (926)
-+||+|.++ ++-| +-||.+||+. |.|+.+++..+....
T Consensus 22 v~FLqdp~V--------~~sp-----~~~K~~FL~s--------KGLt~eEI~~Al~ra 59 (70)
T 2w84_A 22 VKFLQNSRV--------RQSP-----LATRRAFLKK--------KGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHCSTTG--------GGSC-----HHHHHHHHHH--------TTCCHHHHHHHHHHH
T ss_pred HHHhCChhh--------hhCC-----HHHHHHHHHH--------cCCCHHHHHHHHHHc
Confidence 469999887 3445 8899999998 899999999988764
No 9
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Probab=16.21 E-value=41 Score=31.54 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=24.2
Q ss_pred ccccchhhHHHH--hhhhhHHHHhhhcccCCChHH
Q 002416 782 FMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVH 814 (926)
Q Consensus 782 ~~DSFPKLk~wY--~q~q~Ciastlsgl~~g~pvh 814 (926)
..+.||+|++|| .+.+..+..++..--.|+|-|
T Consensus 188 ~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 222 (225)
T 3lsz_A 188 LLEPFPAVAAWLDRCQSRPAFRLMMERRAAEGHHH 222 (225)
T ss_dssp TTTTCHHHHHHHHHHHTSHHHHHHHHHHHHCCCCC
T ss_pred CcccChHHHHHHHHHHcCHHHHHHHhhccccCCcc
Confidence 368899999999 566677777776666665544
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=15.85 E-value=2.1e+02 Score=23.98 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=28.9
Q ss_pred HHHHhhhhHHHHHHHHhhcCCCchhhHHHHHHHHHHhHHHhhhccCCChHHHHHHhh
Q 002416 231 GEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLAS 287 (926)
Q Consensus 231 ~~~l~nK~ts~iLrL~~~Nmpe~w~~f~QRLqllea~s~al~~~k~~~~~~l~~L~~ 287 (926)
-+||+|..+ +|-| +.+|.+||+. |+++.+++.....
T Consensus 17 v~FL~dp~V--------~~sp-----~~~K~~FL~s--------KGLt~~EI~~Al~ 52 (54)
T 3ff5_A 17 VKFLQNSRV--------RQSP-----LATRRAFLKK--------KGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHCTTG--------GGSC-----HHHHHHHHHH--------TTCCHHHHHHHHH
T ss_pred HHHhCChhh--------hcCC-----HHHHHHHHHH--------cCCCHHHHHHHHH
Confidence 368888876 4556 8899999998 8899999988764
Done!