Query 002417
Match_columns 926
No_of_seqs 302 out of 669
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 23:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 3E-278 7E-283 2401.1 77.6 902 11-926 10-918 (918)
2 PLN02264 lipoxygenase 100.0 3E-273 7E-278 2358.7 70.4 835 80-926 82-919 (919)
3 PLN02337 lipoxygenase 100.0 3E-268 7E-273 2325.3 73.9 833 83-926 19-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 6E-207 1E-211 1803.9 28.5 663 232-910 1-667 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 1.1E-41 2.3E-46 332.1 15.1 135 83-223 1-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.1 2.9E-10 6.3E-15 105.8 10.8 84 117-211 20-105 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.7 7E-08 1.5E-12 90.1 8.1 64 158-221 46-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.5 7.8E-07 1.7E-11 84.2 11.3 64 158-221 49-116 (116)
9 cd02899 PLAT_SR Scavenger rece 97.8 0.00013 2.8E-09 69.9 9.4 79 117-211 20-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.5 0.00084 1.8E-08 64.5 10.3 53 159-211 50-105 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.3 0.0028 6E-08 61.2 11.5 95 116-221 19-118 (120)
12 cd01752 PLAT_polycystin PLAT/L 96.9 0.0075 1.6E-07 58.3 10.2 85 117-212 20-108 (120)
13 cd01757 PLAT_RAB6IP1 PLAT/LH2 96.8 0.0042 9.2E-08 60.1 7.6 54 159-213 43-100 (114)
14 cd01754 PLAT_plant_stress PLAT 96.0 0.025 5.3E-07 56.0 7.8 53 158-212 59-118 (129)
15 TIGR03124 ctirate_citX holo-AC 26.3 30 0.00066 35.9 1.0 50 229-295 85-134 (165)
16 PF10474 DUF2451: Protein of u 25.0 47 0.001 36.2 2.2 24 708-737 178-201 (234)
17 cd01755 PLAT_lipase PLAT/ LH2 21.3 4.1E+02 0.0089 25.9 7.7 49 158-206 47-105 (120)
18 PF10281 Ish1: Putative stress 20.4 1.5E+02 0.0034 23.1 3.7 31 727-766 5-35 (38)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=3.1e-278 Score=2401.08 Aligned_cols=902 Identities=81% Similarity=1.304 Sum_probs=844.8
Q ss_pred ccccccccCCCCccccCCCccccccccCccc---ceEEEEeCCCccchhhhccccccccccCCeeeccCCC-CcceEEEE
Q 002417 11 TGPALRRVPAIPGAVSNGNLRPARVSKSKFC---PIRAVVNSDQNKATEAATKSVDAKDVNGSLLVSSSSS-KEGLVDVR 86 (926)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 86 (926)
.|-.++.+|+ .-++|+.|+.+|--+++. +|||||++++ ||.+...+.--+|-+-||.+..++++ -....+||
T Consensus 10 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (918)
T PLN02305 10 SGVSLRASPA---FSALGRRRRTRVPISRSPVAGSIRAVISSED-KAVEESGGESANKSVDGSSLLPSSRSKYAGGIDVR 85 (918)
T ss_pred CceEEeeCcc---cccccceeeeecccccCCCCCceeEEecccc-cccccccccccccccccccccccccchhccCCeEE
Confidence 3445666776 445688888777666543 8999999876 55554555556677778877777632 22346999
Q ss_pred EEEEEEecccccchhcchhhhhhhhhhcCCcEEEEEeecccCCCCCCC-ccccccccccccCCCCCCCcceEEEEEEEee
Q 002417 87 AVITIRKKLKEKLTEKIEDQWELFVNGIGQGIMIQLISEDIDPVTNSG-KSVESAVRGWLPKPVTSSNVNIFQYEANFGV 165 (926)
Q Consensus 87 ~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 165 (926)
|+||||+|++++++++.++++|+++|++||+|+|||||++++|+||+| ++ +++|++|++++...+++ ++|+++|+|
T Consensus 86 ~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~-~~~l~~~~~~~~~~~~~--~~~~~~f~~ 162 (918)
T PLN02305 86 AVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSV-ESSVRGWLPKPSNDPHI--VEYAADFTV 162 (918)
T ss_pred EEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccCCCCCcccc-cchhhccccCCCCCCCc--eEEEEEEee
Confidence 999999999999999999999999999999999999999999999988 66 99999999874332667 799999999
Q ss_pred cCCCCCceEEEEEecCCCceeEeEEEEeecCCCeEEEeecccccCCCCCCCCeEEeeccccCcCCCChhhHHHHHHHHHh
Q 002417 166 PSDFGNPGAILITNLHGKEFYLLEIVVHGFDGGPVFFPANTWIHSRKDNAESRIIFKNQAYLPSQTPAGIKDLRREDLLS 245 (926)
Q Consensus 166 ~~~fG~pgAi~v~n~h~~e~fl~~i~l~~~~~~~i~F~cnsWV~~~~~~~~~riff~n~~ylp~~tp~~l~~~R~~EL~~ 245 (926)
|++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+++||||+||+|||+|||++|++|||+||++
T Consensus 163 ~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~eL~~ 242 (918)
T PLN02305 163 PFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRREDLLS 242 (918)
T ss_pred ccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccccCeeeecccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcccCCCCCc
Q 002417 246 IRGNGKGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVYVPRDETF 325 (926)
Q Consensus 246 lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg~~~pyPRR~rTgr~~~~~dp~~e~~~~~~~~~yvPrDe~F 325 (926)
|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+||++||+||||...+..+||||||+|
T Consensus 243 lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrDE~f 322 (918)
T PLN02305 243 LRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRDETF 322 (918)
T ss_pred hcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCCCCc
Confidence 99999999999999999999999999999999999999996699999999999999999999999765556899999999
Q ss_pred chhhhcccccchHHHHHHhhHHHHHHhccCCCCCCCChHhHHHHhhCCccCCCchhhchhhhhH-HH-HHHHHHhhcccc
Q 002417 326 EEIKQNTFSSGRLKAVLHNLIPSIAASLSSSDIPFTCFSDIDKLYNSGFLLKDDDEQNGRSKLF-LA-TVIKQFLNVGDR 403 (926)
Q Consensus 326 ~~~K~~~f~~~~~k~~~~~~~p~~~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 403 (926)
+++|++||+++++|+++|.++|.|+++++.++++|+||+||++||++|+++|.. .....+.+ +| .+.+.++++++.
T Consensus 323 ~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~--~~~~~~~~p~~~~~~~~i~~~~~~ 400 (918)
T PLN02305 323 EEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTE--EPKDIGLNPFLGNFMKQVLSVSER 400 (918)
T ss_pred ccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCch--hhhhhhcCCchHHHHHHhhhcccc
Confidence 999999999999999999999999999988899999999999999999999852 11222223 32 444445888999
Q ss_pred cccccCchhcccCcccccccHHHHHHHhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHhhhccCCHHHHHhc
Q 002417 404 LFKYETPAVIRRDRFAWLRDNEFARQTLAGVNPVNIEFLKEFPILSKLDPAIYGPPESAITKELIEEELHGLSVEKAIEE 483 (926)
Q Consensus 404 ~~kfp~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~IT~e~i~~~l~G~Tl~eal~~ 483 (926)
++|||+|+||++|+++|++|+|||||||||+||++|+||++||++|+|||++||+++|+||+|||+..|+|+||+|||++
T Consensus 401 ~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G~TleeAl~~ 480 (918)
T PLN02305 401 LLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEGMTVEKAIEE 480 (918)
T ss_pred cccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCCCcHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecccccchhhhcccCCCCcccccceeEEEeeCCCceeeEEEEecCCCCCCCCCCCceeeCCCCCCChhHHHHHH
Q 002417 484 KRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPSRSSPQNKHIYTHGHDATTHWIWKLAK 563 (926)
Q Consensus 484 grLFi~Dy~d~~lp~l~~in~~~~~~~YA~~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP~d~~~~~~~W~LAK 563 (926)
|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++..++||||+++++++|.|+|||
T Consensus 481 ~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~LAK 560 (918)
T PLN02305 481 KRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWKLAK 560 (918)
T ss_pred CCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777677789999987778899999999
Q ss_pred HHHhhcchhhHHHHHHHhhhcchhhHHHHHHhccCCCcCchhhhccccchhhccchHHHhhccccCCccccccccCchhH
Q 002417 564 AHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASFSPGRYA 643 (926)
Q Consensus 564 ~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~f~~G~~~ 643 (926)
|||++||++|||+|+||++||++|||||||||||||++|||||||+||||+||+||++||++|||+||+||++|++|+|+
T Consensus 561 ~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiie~~fspg~~~ 640 (918)
T PLN02305 561 AHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFSPGKYA 640 (918)
T ss_pred HHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCCCCceeeeeccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCcCCccHHhhhcccccCCCccCCCCCCccccccccCCccchhhHHHHHHHHHHHHHHcccccCccc
Q 002417 644 MELSSAAYKSFWRFDMEALPADLLRSDKIVRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAHFYSEPN 723 (926)
Q Consensus 644 ~elss~~Yk~~w~f~~~~LP~DL~~~~~~~RG~a~~D~~~p~gl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~YY~sD~ 723 (926)
|||++++|++.|+|++++||+||++ |||+++|+++|||++|.|||||||+|||+||+||++||++||++||++|+
T Consensus 641 ~elss~aYk~~w~Fd~~~LP~DL~k-----RGva~~D~~~p~gl~l~ipdYPYrdDGL~IW~AIk~wV~~yV~~YY~~D~ 715 (918)
T PLN02305 641 MELSSAAYKSMWRFDMEALPADLIR-----RGMAEEDPSMPCGVRLVIEDYPYAADGLLIWSAIKEWVESYVDHFYSEPN 715 (918)
T ss_pred HHHHHHHHHhcCcCccccCHHHHHH-----cCCCccCCCCcccccccCCCCchhhhhHHHHHHHHHHHHHHHHhhCCChh
Confidence 9999999998899999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhhhccccccccccccCCcccccccCCcccccccCCCC
Q 002417 724 SVTSDVELQAWWSEIKNKGHHDKRNEAWWPKLETKEDLSGIITIMIWTASGQHAAINFGQYPFGGYVPNRPTLMRKLVPQ 803 (926)
Q Consensus 724 ~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~i~T~~eLv~~lT~IIf~aSaqHAAVNfgQy~y~gfvPN~P~~lr~p~P~ 803 (926)
+|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|++||++||+
T Consensus 716 ~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQydy~gfvPN~P~~~Rrp~P~ 795 (918)
T PLN02305 716 SITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKLIPQ 795 (918)
T ss_pred hhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCCCchhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhccCchhHHhhcCCChHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 002417 804 ENDPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKI 883 (926)
Q Consensus 804 ~g~~e~~~l~~~pe~~~L~tLP~~~qa~~~m~l~~lLS~h~~de~yLG~~~~~~~~~~~d~~~~~A~~~F~~~L~~Ie~~ 883 (926)
+++++|++|+.+||++||++||++.||+.+|+++++||+|++||+||||+.+.+..|+.|+++++|+++|+++|++||++
T Consensus 796 ~~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~~D~~~~~A~~rF~~~L~eIE~~ 875 (918)
T PLN02305 796 ENDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWINDHEVVKLFNKFSARLEEIEKT 875 (918)
T ss_pred CCCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999999999999999872227999999999999999999999999
Q ss_pred HHhhccccccccccCCCCCCceeecCCCCCCCccCCcCccccC
Q 002417 884 INTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 926 (926)
Q Consensus 884 I~~RN~~~~lknr~g~~~~PY~~L~Pss~~g~t~~gIPNSIsI 926 (926)
|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 876 I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI 918 (918)
T PLN02305 876 INERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI 918 (918)
T ss_pred HHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence 9999999999999999999999999999999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=3.3e-273 Score=2358.73 Aligned_cols=835 Identities=57% Similarity=1.029 Sum_probs=802.5
Q ss_pred cceEEEEEEEEEEecccccchhcchhhhhhhhhhcCCcEEEEEeecccCCCCCCC-ccccccccccccCCCCCCCcceEE
Q 002417 80 EGLVDVRAVITIRKKLKEKLTEKIEDQWELFVNGIGQGIMIQLISEDIDPVTNSG-KSVESAVRGWLPKPVTSSNVNIFQ 158 (926)
Q Consensus 80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 158 (926)
..+++|||+||||+|++++++++.++++|+++|++||+|+|||||++++|+||+| +|++++|++|++++.+.+++ ++
T Consensus 82 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~~~~~~~~--~~ 159 (919)
T PLN02264 82 AVKFKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKKSNIKAER--VH 159 (919)
T ss_pred ceEEEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccCCCCCCCc--eE
Confidence 3568999999999999999999999999999999999999999999999999998 99999999999875556778 79
Q ss_pred EEEEEeecCCCCCceEEEEEecCCCceeEeEEEEeecCCCeEEEeecccccCCCCCCCCeEEeeccccCcCCCChhhHHH
Q 002417 159 YEANFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDGGPVFFPANTWIHSRKDNAESRIIFKNQAYLPSQTPAGIKDL 238 (926)
Q Consensus 159 ~~~~f~~~~~fG~pgAi~v~n~h~~e~fl~~i~l~~~~~~~i~F~cnsWV~~~~~~~~~riff~n~~ylp~~tp~~l~~~ 238 (926)
|+|+|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+++||||+||+|||++||++|++|
T Consensus 160 y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~ 239 (919)
T PLN02264 160 YTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRAL 239 (919)
T ss_pred EEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCcccccCeeeecccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCcc
Q 002417 239 RREDLLSIRGNGKGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCRTGRPPTKTDPLCESRIEKPHPVY 318 (926)
Q Consensus 239 R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg~~~pyPRR~rTgr~~~~~dp~~e~~~~~~~~~y 318 (926)
||+||++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+||+|||++|||...+..+|
T Consensus 240 Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iY 319 (919)
T PLN02264 240 REKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMY 319 (919)
T ss_pred HHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCcee
Confidence 99999999999999999999999999999999999999999999999779999999999999999999999976555689
Q ss_pred cCCCCCcchhhhcccccchHHHHHHhhHHHHHHhccCCCCCCCChHhHHHHhhCCccCCCchhhchhhhhH-HHHHHHHH
Q 002417 319 VPRDETFEEIKQNTFSSGRLKAVLHNLIPSIAASLSSSDIPFTCFSDIDKLYNSGFLLKDDDEQNGRSKLF-LATVIKQF 397 (926)
Q Consensus 319 vPrDe~F~~~K~~~f~~~~~k~~~~~~~p~~~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 397 (926)
|||||+|+++|++||+++++|+++|.++|.++++++.+ +|+||+||++||++|+++|.. ..++..+.+ +|.+.+.+
T Consensus 320 vPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~-~~~~~~~~~p~~~~~~~~ 396 (919)
T PLN02264 320 VPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLG-FQDDIFKKFPLPKVVTTL 396 (919)
T ss_pred CCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcc-hhhhHhhcCChHHHHHHh
Confidence 99999999999999999999999999999999998754 999999999999999998852 112233334 54555556
Q ss_pred hhcccccccccCchhcccCcccccccHHHHHHHhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHhhhccCCH
Q 002417 398 LNVGDRLFKYETPAVIRRDRFAWLRDNEFARQTLAGVNPVNIEFLKEFPILSKLDPAIYGPPESAITKELIEEELHGLSV 477 (926)
Q Consensus 398 ~~~~~~~~kfp~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~IT~e~i~~~l~G~Tl 477 (926)
+++++.++|||+|+||++|+++|++|+|||||||||+||++|+||++||++|+|||+.||+++|+||++||+..|+|+||
T Consensus 397 ~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G~Tl 476 (919)
T PLN02264 397 QESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDGLSV 476 (919)
T ss_pred hhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCCCcH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEecccccchhhhcccCCCCcccccceeEEEeeCCCceeeEEEEecCCCCCCCCCCCceeeCCCCCCChh
Q 002417 478 EKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPSRSSPQNKHIYTHGHDATTHW 557 (926)
Q Consensus 478 ~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YA~~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP~d~~~~~~ 557 (926)
+|||++|||||+||||++|||++++|..+++++|||+||||++++|+|+||||||++++++++++.++||||+++++++|
T Consensus 477 ~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w 556 (919)
T PLN02264 477 QQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNW 556 (919)
T ss_pred HHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999998766567789999977777899
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHhhhcchhhHHHHHHhccCCCcCchhhhccccchhhccchHHHhhccccCCccccccc
Q 002417 558 IWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEASF 637 (926)
Q Consensus 558 ~W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGiie~~f 637 (926)
.|+||||||++||++|||+|+||++||++|||||||||||||.+|||||||.||||+||+||++||++|||+||++|++|
T Consensus 557 ~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~gGiid~~f 636 (919)
T PLN02264 557 MWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQTLISADGVIESCF 636 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHhccccCCcCCccHHhhhcccccCCCccCCCCCCccccccccCCccchhhHHHHHHHHHHHHHHccc
Q 002417 638 SPGRYAMELSSAAYKSFWRFDMEALPADLLRSDKIVRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVESYVAH 717 (926)
Q Consensus 638 ~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~~~~~~RG~a~~D~~~p~gl~l~l~dYpYrdDGL~IW~AI~~~V~~yv~~ 717 (926)
++|+++|||++++|++.|+|++++||+||++ |||+++|+++||||++.|||||||+|||+||+||++||++||++
T Consensus 637 ~pg~~~~elss~aYk~~W~F~~~~LP~DL~~-----RGv~~~D~~~phgl~l~ipdYPYrdDGL~iW~AIk~~V~~yv~~ 711 (919)
T PLN02264 637 TAGQYGMEISAAAYKNSWRFDMEGLPADLIR-----RGMAVPDPTQPHGLKLLIEDYPYANDGLLLWSAIQTWVRTYVER 711 (919)
T ss_pred ccchhHHHHHHHHHHhccCCccccCHHHHHH-----cCCCCCCcccccchhhccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997799999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhhhccccccccccccCCcccccccCCccccc
Q 002417 718 FYSEPNSVTSDVELQAWWSEIKNKGHHDKRNEAWWPKLETKEDLSGIITIMIWTASGQHAAINFGQYPFGGYVPNRPTLM 797 (926)
Q Consensus 718 YY~sD~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~i~T~~eLv~~lT~IIf~aSaqHAAVNfgQy~y~gfvPN~P~~l 797 (926)
||++|++|++|.|||+||+||++.||+|+++.+|||+|+|+++||++||+|||+|||||||||||||+|+||+||+|++|
T Consensus 712 YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQydy~gfvPN~P~~~ 791 (919)
T PLN02264 712 YYPDPSLICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQYPYGGYVPNRPPLM 791 (919)
T ss_pred hCCChhhhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCcccccccCCCCChHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhhhccCchhHHhhcCCChHHHHHHHHHHHhhcCCCCCCcccccccccCC-CCCCCHHHHHHHHHHHHH
Q 002417 798 RKLVPQENDPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHS-HWINDPEVLNMFDKFSAN 876 (926)
Q Consensus 798 r~p~P~~g~~e~~~l~~~pe~~~L~tLP~~~qa~~~m~l~~lLS~h~~de~yLG~~~~~~~-~~~~d~~~~~A~~~F~~~ 876 (926)
|++||++++++|++|+.+|+++||++||++.||+.+|+++++||+|++||+||||+.. + +|+.|+++++||++|+++
T Consensus 792 rrp~P~~~~~e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~--~~~w~~D~~~~~af~rF~~~ 869 (919)
T PLN02264 792 RRLIPDESDPEYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQ--PSIWTGDAEIVEAFYGFSAE 869 (919)
T ss_pred cCCCCCCCChhhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCC--ccccccCHHHHHHHHHHHHH
Confidence 9999999889999999999999999999999999999999999999999999999875 4 899999999999999999
Q ss_pred HHHHHHHHHhhccccccccccCCCCCCceeecCCCCCCCccCCcCccccC
Q 002417 877 LEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 926 (926)
Q Consensus 877 L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Pss~~g~t~~gIPNSIsI 926 (926)
|++||++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 870 L~eIe~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~G~T~~gIPNSISI 919 (919)
T PLN02264 870 IGRIEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 919 (919)
T ss_pred HHHHHHHHHHHcCCccccccCCCCCCCceeeCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=3.1e-268 Score=2325.30 Aligned_cols=833 Identities=47% Similarity=0.822 Sum_probs=800.4
Q ss_pred EEEEEEEEEEecccccchhcchhhhhhhhhhcCCcEEEEEeecccCC-CCC-CC-ccccccccccccC-CCCCCCcceEE
Q 002417 83 VDVRAVITIRKKLKEKLTEKIEDQWELFVNGIGQGIMIQLISEDIDP-VTN-SG-KSVESAVRGWLPK-PVTSSNVNIFQ 158 (926)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~-~~~-~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 158 (926)
.+|||+||||+|++++++++.++++|+++|++||+|+|||||++++| +|| +| +|++++|++|+++ +.+.+++ ++
T Consensus 19 ~~~~~~v~l~~k~~ld~~~~~~~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~~~~~~--~~ 96 (866)
T PLN02337 19 EKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSLTAGE--SA 96 (866)
T ss_pred ceEEEEEEEEEecccchhhcccchhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCCCCCCc--eE
Confidence 38999999999999999999999999999999999999999999987 788 77 8999999999987 5657788 79
Q ss_pred EEEEEeecCCCCCceEEEEEecCCCceeEeEEEEeecCC-CeEEEeecccccCCCCCCCCeEEeeccccCcCCCChhhHH
Q 002417 159 YEANFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDG-GPVFFPANTWIHSRKDNAESRIIFKNQAYLPSQTPAGIKD 237 (926)
Q Consensus 159 ~~~~f~~~~~fG~pgAi~v~n~h~~e~fl~~i~l~~~~~-~~i~F~cnsWV~~~~~~~~~riff~n~~ylp~~tp~~l~~ 237 (926)
|+|+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++|+++||||+||+|||++||++|++
T Consensus 97 y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~tP~~l~~ 176 (866)
T PLN02337 97 FKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQTPAPLRP 176 (866)
T ss_pred EEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccccHHHHH
Confidence 999999999999999999999999999999999999996 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCcccccCeeeecccccCCCCCCCCCCCccccCCC-CCCCCCCCCCCCCCCCCCCCCCcccCCC-CC
Q 002417 238 LRREDLLSIRGNGKGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSG-EERPYPRRCRTGRPPTKTDPLCESRIEK-PH 315 (926)
Q Consensus 238 ~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg-~~~pyPRR~rTgr~~~~~dp~~e~~~~~-~~ 315 (926)
|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+||++||+||||... ..
T Consensus 177 ~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~esr~~~~~~ 256 (866)
T PLN02337 177 YREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSESRLPLLSL 256 (866)
T ss_pred HHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccccccccCCC
Confidence 999999999999999999999999999999999999999999999999 6799999999999999999999999654 34
Q ss_pred CcccCCCCCcchhhhcccccchHHHHHHhhHHHHHHhccCCCCCCCChHhHHHHhhCCccCCCchhhchhhhhH-HHHHH
Q 002417 316 PVYVPRDETFEEIKQNTFSSGRLKAVLHNLIPSIAASLSSSDIPFTCFSDIDKLYNSGFLLKDDDEQNGRSKLF-LATVI 394 (926)
Q Consensus 316 ~~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~~~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~-~~~~~ 394 (926)
.+||||||+|+++|++||+++++|+++|.++|.|+++++.+..+|++|+||++||++|+++|..+.++.+.+.+ +++++
T Consensus 257 ~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~~~~~~~~~p~~~~~ 336 (866)
T PLN02337 257 NIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPLLEELRKNIPLEMLK 336 (866)
T ss_pred CcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchHHHHhhhcChHHHHH
Confidence 58999999999999999999999999999999999999888999999999999999999998643333333334 56788
Q ss_pred HHHhhcccccccccCchhcccCcccccccHHHHHHHhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHhhhcc
Q 002417 395 KQFLNVGDRLFKYETPAVIRRDRFAWLRDNEFARQTLAGVNPVNIEFLKEFPILSKLDPAIYGPPESAITKELIEEELHG 474 (926)
Q Consensus 395 ~~~~~~~~~~~kfp~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~IT~e~i~~~l~G 474 (926)
++++++++.++|||+|+||++|+++|++|+|||||||||+||++|+||++||++|+|||++||+++|+||++||++.|+|
T Consensus 337 ~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s~iT~e~v~~~L~g 416 (866)
T PLN02337 337 ELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNSSITEEHIEKNLEG 416 (866)
T ss_pred HHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccCccCHHHHHhccCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhcCCEEEEecccccchhhhcccCCCCcccccceeEEEeeCCCceeeEEEEecCCCCCCC--CCCCceeeCCCC
Q 002417 475 LSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPSRSS--PQNKHIYTHGHD 552 (926)
Q Consensus 475 ~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YA~~~Lffl~~dG~L~PlAIqL~~~~~~~~--~~~~~VfTP~d~ 552 (926)
+||+|||++|||||+||||.+|||+.++|...++ .|||+||||++++|+|+||||||++|+..++ ++.++||||+++
T Consensus 417 ~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~~~g~~~~VfTP~~~ 495 (866)
T PLN02337 417 LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPHPQGDKFGAVSKVYTPAED 495 (866)
T ss_pred ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCCCCcccCCCCCCeECCCCC
Confidence 9999999999999999999999999999986554 9999999999999999999999998875433 467999999987
Q ss_pred CCChhHHHHHHHHHhhcchhhHHHHHHHhhhcchhhHHHHHHhccCCCcCchhhhccccchhhccchHHHhhccccCCcc
Q 002417 553 ATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLINGGGI 632 (926)
Q Consensus 553 ~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~gGi 632 (926)
++++|.|+||||||++||++|||+|+||++||++||||+||||||||++|||||||.||||+||+||++||++||++||+
T Consensus 496 ~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~~AR~~LI~~gGi 575 (866)
T PLN02337 496 GVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALARQILINAGGI 575 (866)
T ss_pred CCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHheeCCCCe
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHhccccCCcCCccHHhhhcccccCCCccCCCCCCccccccccCCccchhhHHHHHHHHHHHH
Q 002417 633 IEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRSDKIVRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKEWVE 712 (926)
Q Consensus 633 ie~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~~~~~~RG~a~~D~~~p~gl~l~l~dYpYrdDGL~IW~AI~~~V~ 712 (926)
+|+++++|+++|||++++|++ |+|++++||+||++ |||+++|+++|||+++.|||||||+|||+||+||++||+
T Consensus 576 id~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~-----RGv~~~D~~~p~g~~l~i~dYPYrdDGL~iW~AI~~~V~ 649 (866)
T PLN02337 576 LESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIK-----RGVAVEDPSSPHGVRLLIEDYPYAVDGLEIWSAIETWVK 649 (866)
T ss_pred eeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHH-----cCCCccccccccccccccCCCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999 999999999999999999999999999999999999999
Q ss_pred HHcccccCcccccCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhhhccccccccccccCCcccccccCC
Q 002417 713 SYVAHFYSEPNSVTSDVELQAWWSEIKNKGHHDKRNEAWWPKLETKEDLSGIITIMIWTASGQHAAINFGQYPFGGYVPN 792 (926)
Q Consensus 713 ~yv~~YY~sD~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~i~T~~eLv~~lT~IIf~aSaqHAAVNfgQy~y~gfvPN 792 (926)
+||++||++|++|++|.|||+||+||+++|||++++++|||+|+|+++||++||+|||+|||||||||||||+|+||+||
T Consensus 650 ~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAVNfgQy~y~gfvPN 729 (866)
T PLN02337 650 EYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAVNFGQYPYAGYLPN 729 (866)
T ss_pred HHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhhhcCCcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCChhhhhhccCchhHHhhcCCChHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCHHHHHHHHH
Q 002417 793 RPTLMRKLVPQENDPGYEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDK 872 (926)
Q Consensus 793 ~P~~lr~p~P~~g~~e~~~l~~~pe~~~L~tLP~~~qa~~~m~l~~lLS~h~~de~yLG~~~~~~~~~~~d~~~~~A~~~ 872 (926)
+|++||++||++|+.+|.+|..+||+++|++||++.||+.+|+++++||+|++||+|||+|++ +.|+.|+++++|+++
T Consensus 730 ~P~~~r~~~P~~~~~e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~de~yLG~~~~--~~w~~d~~~~~a~~~ 807 (866)
T PLN02337 730 RPTVSRRFMPEPGTPEYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDT--PEWTSDAEPLEAFKR 807 (866)
T ss_pred CchhhcCCCCCCCchhhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCCceeccCcCC--cccccCHHHHHHHHH
Confidence 999999999988888999999999999999999999999999999999999999999999987 799999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCceeecCCC-----CCCCccCCcCccccC
Q 002417 873 FSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSS-----GPGVTGRGIPNSISI 926 (926)
Q Consensus 873 F~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Pss-----~~g~t~~gIPNSIsI 926 (926)
|+++|++||++|++||+++++|||+||+++||+||+|++ +||||||||||||||
T Consensus 808 F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 808 FGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred HHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCcccC
Confidence 999999999999999999999999999999999999999 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=5.8e-207 Score=1803.88 Aligned_cols=663 Identities=57% Similarity=0.987 Sum_probs=577.0
Q ss_pred ChhhHHHHHHHHHhhhcCCCCcccccCeeeecccccCCCCCCCCCCCccccCCC-CCCCCCCCCCCCCCCCCCCCCCccc
Q 002417 232 PAGIKDLRREDLLSIRGNGKGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSG-EERPYPRRCRTGRPPTKTDPLCESR 310 (926)
Q Consensus 232 p~~l~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg-~~~pyPRR~rTgr~~~~~dp~~e~~ 310 (926)
|+||++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred CCCCCCcccCCCCCcchhhhcccccchHHHHHHhhHHHHHHhccCCCCCCCChHhHHHHhhCCccCCCchhhchhhhhH-
Q 002417 311 IEKPHPVYVPRDETFEEIKQNTFSSGRLKAVLHNLIPSIAASLSSSDIPFTCFSDIDKLYNSGFLLKDDDEQNGRSKLF- 389 (926)
Q Consensus 311 ~~~~~~~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~~~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~- 389 (926)
.. ++||||||+|++.|++||.++++|+++|.++|.|++++..+..+|+||+||++||++|+++|.. .+.+.+
T Consensus 81 ~~---~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~~----~~~~~~~ 153 (667)
T PF00305_consen 81 SG---DIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPTD----LLKKLIP 153 (667)
T ss_dssp -S---SGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--HH----HHCCHTT
T ss_pred cc---cccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchhh----HhhhcCc
Confidence 43 5999999999999999999999999999999999999877889999999999999999888732 121222
Q ss_pred HHHHHHHHhhcccccccccCchhcccCcccccccHHHHHHHhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHH
Q 002417 390 LATVIKQFLNVGDRLFKYETPAVIRRDRFAWLRDNEFARQTLAGVNPVNIEFLKEFPILSKLDPAIYGPPESAITKELIE 469 (926)
Q Consensus 390 ~~~~~~~~~~~~~~~~kfp~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~Irr~~e~P~~s~ld~~~yg~~~s~IT~e~i~ 469 (926)
++.+++++++++++++|||+|+|++.++++|++|+|||||+|||+||++|+||++||++|+||+++||+++|+||++||+
T Consensus 154 ~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~ 233 (667)
T PF00305_consen 154 LELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIE 233 (667)
T ss_dssp STTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHH
T ss_pred HHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhh
Confidence 34566777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCHHHHHhcCCEEEEecccccchhhhcccCCCCcccccceeEEEeeCCCceeeEEEEecCCCCCCCCCCCceeeC
Q 002417 470 EELHGLSVEKAIEEKRLFILDYHDLLLPFIEKINSLPDRKTYASRTVFFYNKAGMLRPLAIELSLPPSRSSPQNKHIYTH 549 (926)
Q Consensus 470 ~~l~G~Tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YA~~~Lffl~~dG~L~PlAIqL~~~~~~~~~~~~~VfTP 549 (926)
..|+|+||++||++|||||+|||++++|++++||. .+++.|||+||||++++|+|+||||||++|+..+.++.++||||
T Consensus 234 ~~l~g~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP 312 (667)
T PF00305_consen 234 PQLEGLTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTP 312 (667)
T ss_dssp HHCHCS-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-T
T ss_pred hccCCCcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeec
Confidence 99999999999999999999999999999999998 78899999999999999999999999988865444567899999
Q ss_pred CCCCCChhHHHHHHHHHhhcchhhHHHHHHHhhhcchhhHHHHHHhccCCCcCchhhhccccchhhccchHHHhhccccC
Q 002417 550 GHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLMTHASMEPYIIATHRQLSSMHPIYKLLHPHMRYTLEINALARQSLING 629 (926)
Q Consensus 550 ~d~~~~~~~W~LAK~~v~~aD~~~HqlvsHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~ 629 (926)
+++++.+|.|+||||||++||+++||+|+||++||+|||||+|||+||||.+|||||||.||||+||+||++||++||++
T Consensus 313 ~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~ 392 (667)
T PF00305_consen 313 SDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINA 392 (667)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSST
T ss_pred CCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhcc
Confidence 96566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCchhHHHHHHHHHhccccCCcCCccHHhhhcccccCCCccCCCCCCccccccccCCccchhhHHHHHHHHH
Q 002417 630 GGIIEASFSPGRYAMELSSAAYKSFWRFDMEALPADLLRSDKIVRGMAEEDPSMPSGVRLVIEDYPYAADGLLIWCAIKE 709 (926)
Q Consensus 630 gGiie~~f~~G~~~~elss~~Yk~~w~f~~~~LP~DL~~~~~~~RG~a~~D~~~p~gl~l~l~dYpYrdDGL~IW~AI~~ 709 (926)
||+||++|++|+++|||++++|++ |+|++++||+||++ |||+++|+++|||+++.|||||||+|||+||+||++
T Consensus 393 gG~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~-----RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~ 466 (667)
T PF00305_consen 393 GGIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKK-----RGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKK 466 (667)
T ss_dssp TSHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHH-----TTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHH
T ss_pred CcccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHh-----hcccccccccccccccccccCChhHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHcccccCcccccCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhhhhccccccccccccCCcccccc
Q 002417 710 WVESYVAHFYSEPNSVTSDVELQAWWSEIKNKGHHDKRNEAWWPKLETKEDLSGIITIMIWTASGQHAAINFGQYPFGGY 789 (926)
Q Consensus 710 ~V~~yv~~YY~sD~~V~~D~ELQaW~~Ei~~~G~~d~kd~p~~P~i~T~~eLv~~lT~IIf~aSaqHAAVNfgQy~y~gf 789 (926)
||++||++||++|++|++|.|||+||+||+++||+|+++.+||++|+|+++||++||+|||+||+||||||||||+|+||
T Consensus 467 ~V~~~v~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~ 546 (667)
T PF00305_consen 467 FVSDYVNLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGF 546 (667)
T ss_dssp HHHHHHHHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSS
T ss_pred HHHHhhhhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeee
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCcccccccCCCCCCChh--hhhhccCchhHHhhcCCChHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCHHHH
Q 002417 790 VPNRPTLMRKLVPQENDPG--YEKFLLNPQHTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVL 867 (926)
Q Consensus 790 vPN~P~~lr~p~P~~g~~e--~~~l~~~pe~~~L~tLP~~~qa~~~m~l~~lLS~h~~de~yLG~~~~~~~~~~~d~~~~ 867 (926)
+||+|++||+++|.+++.+ |++|+.+||+++|++||++.||+.+|+++++||+|++||+|||+|++ +.|++|++++
T Consensus 547 ~PN~P~~~r~~~P~~~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~--~~w~~d~~~~ 624 (667)
T PF00305_consen 547 VPNRPTALRRPMPPPTTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPE--PHWFSDPEAK 624 (667)
T ss_dssp GGGS-S-BSSSS--TSSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SS--TTSSSSHHHH
T ss_pred cCCCChhhcccCCCCCcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCc--ccccccHHHH
Confidence 9999999999999987766 99999999999999999999999999999999999999999999988 7899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCceeecCC
Q 002417 868 NMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS 910 (926)
Q Consensus 868 ~A~~~F~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~Ps 910 (926)
+|+++|+++|++||++|++||+++++|||+|||++||+||+||
T Consensus 625 ~a~~~F~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 625 AAFERFQEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999999999996
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=1.1e-41 Score=332.09 Aligned_cols=135 Identities=36% Similarity=0.693 Sum_probs=128.0
Q ss_pred EEEEEEEEEEecccccchhcchhhhhhhhhhcCCcEEEEEeecccCCCCCCC-ccccccccccccCCCCCCCcceEEEEE
Q 002417 83 VDVRAVITIRKKLKEKLTEKIEDQWELFVNGIGQGIMIQLISEDIDPVTNSG-KSVESAVRGWLPKPVTSSNVNIFQYEA 161 (926)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (926)
++|||+|+||+|++++++++. +.+|+++|++||+|+|||||+++||+||+| ++++++|++|.++. +++ ++|++
T Consensus 1 ~~vka~V~v~~k~~~~~~~~~-~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~---~~e--~~y~~ 74 (137)
T cd01751 1 VKVKATVTVMKKNKLDLNDDG-SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL---AGE--SAYEA 74 (137)
T ss_pred CEEEEEEEEEEeecccccccc-chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC---Ccc--eEEEE
Confidence 379999999999999999887 999999999999999999999999999988 99999999998542 667 69999
Q ss_pred EEeecCCCCCceEEEEEecCCCceeEeEEEEeecCC-CeEEEeecccccCCCCCCCCeEEeec
Q 002417 162 NFGVPSDFGNPGAILITNLHGKEFYLLEIVVHGFDG-GPVFFPANTWIHSRKDNAESRIIFKN 223 (926)
Q Consensus 162 ~f~~~~~fG~pgAi~v~n~h~~e~fl~~i~l~~~~~-~~i~F~cnsWV~~~~~~~~~riff~n 223 (926)
+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++|+++||||+|
T Consensus 75 ~F~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 75 EFEVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EEEeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 999999999999999999999999999999999996 99999999999999999999999998
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.14 E-value=2.9e-10 Score=105.83 Aligned_cols=84 Identities=30% Similarity=0.522 Sum_probs=65.5
Q ss_pred cEEEEEeecccCCCCCCCccccccccccccCCCCCCCcceEEEEEEEeecCCCCCceEEEEEecC-CCceeEeEEEEeec
Q 002417 117 GIMIQLISEDIDPVTNSGKSVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLH-GKEFYLLEIVVHGF 195 (926)
Q Consensus 117 ~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~fG~pgAi~v~n~h-~~e~fl~~i~l~~~ 195 (926)
+|.|+|++++.+ +| .+....+++|. ...+ ..|+..|+++.++|++++|.|.|.+ +.+|||++|+|++.
T Consensus 20 ~V~l~L~g~~~~--s~--~~~~~~~~~~~----f~~g---~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~ 88 (105)
T smart00308 20 SVSLSLVGAEGD--GK--ESKLDYLFKGI----FARG---STYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDL 88 (105)
T ss_pred eEEEEEEeCCCC--Cc--ceeccccCCcc----ccCC---ceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEEC
Confidence 699999998765 22 22233444442 2233 3688889999999999999999999 89999999999987
Q ss_pred C-CCeEEEeecccccCC
Q 002417 196 D-GGPVFFPANTWIHSR 211 (926)
Q Consensus 196 ~-~~~i~F~cnsWV~~~ 211 (926)
+ ++.++|+||+||++.
T Consensus 89 ~~~~~~~F~c~~Wl~~~ 105 (105)
T smart00308 89 PTGGKYHFPCNSWVYPD 105 (105)
T ss_pred CCCCEEEEEcCceeCCC
Confidence 6 578999999999863
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.65 E-value=7e-08 Score=90.14 Aligned_cols=64 Identities=28% Similarity=0.476 Sum_probs=57.4
Q ss_pred EEEEEEeecCCCCCceEEEEEec---CCCceeEeEEEEeecC-CCeEEEeecccccCCCCCCCCeEEe
Q 002417 158 QYEANFGVPSDFGNPGAILITNL---HGKEFYLLEIVVHGFD-GGPVFFPANTWIHSRKDNAESRIIF 221 (926)
Q Consensus 158 ~~~~~f~~~~~fG~pgAi~v~n~---h~~e~fl~~i~l~~~~-~~~i~F~cnsWV~~~~~~~~~riff 221 (926)
..+..|+.+.++|.|.+|.|.+. +...|||++|+|...+ +....|+||+||....+++.+||||
T Consensus 46 ~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 46 TDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred eEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 55566667889999999999998 7999999999998866 5789999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.52 E-value=7.8e-07 Score=84.20 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=55.7
Q ss_pred EEEEEEeecCCCCCceEEEEEecCCC---ceeEeEEEEeecC-CCeEEEeecccccCCCCCCCCeEEe
Q 002417 158 QYEANFGVPSDFGNPGAILITNLHGK---EFYLLEIVVHGFD-GGPVFFPANTWIHSRKDNAESRIIF 221 (926)
Q Consensus 158 ~~~~~f~~~~~fG~pgAi~v~n~h~~---e~fl~~i~l~~~~-~~~i~F~cnsWV~~~~~~~~~riff 221 (926)
.++..|+++.++|.+.+|.|.+.+.. +|||++|+|.+.. +...+|+||+||.....++..|+|.
T Consensus 49 ~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 49 TDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred ceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 45556777889999999999998865 9999999998877 4789999999999999899888873
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=97.77 E-value=0.00013 Score=69.88 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=54.8
Q ss_pred cEEEEEeecccCCCCCCCccccccccccccCCCCCCCcceEEEEEEEeecCCCCCceEEEEEecC-CCceeEeEEEEeec
Q 002417 117 GIMIQLISEDIDPVTNSGKSVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLH-GKEFYLLEIVVHGF 195 (926)
Q Consensus 117 ~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~fG~pgAi~v~n~h-~~e~fl~~i~l~~~ 195 (926)
+|.|+||-++- .++. ..|.+ ....+.+ ..|.+ . +++.|.+-.|.|.|.. .+.|||+.|+|++.
T Consensus 20 ~V~i~L~G~~g--~S~~-----~~L~~-----~F~~G~~-d~F~v--~-~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~~ 83 (109)
T cd02899 20 TIEITLLGSSG--RSNP-----KTLSQ-----GFYPGSL-KRIRF--R-AADVGDINAIILSNTALNDPWYCDYVRIKSE 83 (109)
T ss_pred eEEEEEEECCC--CcCC-----EEccC-----ccCCCce-EEEEE--C-ccccCceEEEEEECCCCCCCceeeEEEEECC
Confidence 58899996643 2232 22221 1222321 35654 4 7999999999998876 77899999999883
Q ss_pred CCCeEEEeecccccCC
Q 002417 196 DGGPVFFPANTWIHSR 211 (926)
Q Consensus 196 ~~~~i~F~cnsWV~~~ 211 (926)
.+...+||||+|+..-
T Consensus 84 ~g~~~~Fpc~rWla~~ 99 (109)
T cd02899 84 DGKVFAFNVKRWIGYP 99 (109)
T ss_pred CCCEEEEEcceeeCCc
Confidence 3677889999999643
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.47 E-value=0.00084 Score=64.46 Aligned_cols=53 Identities=25% Similarity=0.385 Sum_probs=44.0
Q ss_pred EEEEEeecCCCCCceEEEEEecC---CCceeEeEEEEeecCCCeEEEeecccccCC
Q 002417 159 YEANFGVPSDFGNPGAILITNLH---GKEFYLLEIVVHGFDGGPVFFPANTWIHSR 211 (926)
Q Consensus 159 ~~~~f~~~~~fG~pgAi~v~n~h---~~e~fl~~i~l~~~~~~~i~F~cnsWV~~~ 211 (926)
.+..+.++.++|.+-.|.|...+ ...|||+.|+|++..+...+|+||+|+...
T Consensus 50 d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~~~~~~F~c~rWl~~~ 105 (113)
T cd01753 50 DEYKVKVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPGGDEYHFPCYRWIEGY 105 (113)
T ss_pred eEEEEecccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCCCCEEEEEhHHeECCC
Confidence 33445567899999999999875 779999999998766678889999999765
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.29 E-value=0.0028 Score=61.19 Aligned_cols=95 Identities=18% Similarity=0.315 Sum_probs=61.1
Q ss_pred CcEEEEEeecccCCCCCCCccccccccccccCCCCCCCcceEEEEEEEeecCCCCCceEEEEEecC---CCceeEeEEEE
Q 002417 116 QGIMIQLISEDIDPVTNSGKSVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLH---GKEFYLLEIVV 192 (926)
Q Consensus 116 ~~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~fG~pgAi~v~n~h---~~e~fl~~i~l 192 (926)
-+|.++|+-+.- .+..-.|..+........+.+ .+|.++ . .++|.+-.|.|.... ...|||+.|+|
T Consensus 19 a~V~i~L~G~~g-------~s~~~~L~~~~~~~~FerGs~-d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V 87 (120)
T cd01756 19 ANVFITLYGENG-------DTGKRKLKKSNNKNKFERGQT-DKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEI 87 (120)
T ss_pred cEEEEEEEeCCC-------ccccEEccCCCcCCcccCCCe-EEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEE
Confidence 348888875331 122344544311122333331 356555 4 799999999999766 46899999999
Q ss_pred eecC-CCeEEEeecccccCCCC-CCCCeEEe
Q 002417 193 HGFD-GGPVFFPANTWIHSRKD-NAESRIIF 221 (926)
Q Consensus 193 ~~~~-~~~i~F~cnsWV~~~~~-~~~~riff 221 (926)
.+.. +...+|+||+|+...+. -.-.|++.
T Consensus 88 ~~~~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 88 REPGTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred EECCCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 8766 56788999999987643 22346554
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=96.88 E-value=0.0075 Score=58.28 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=56.8
Q ss_pred cEEEEEeecccCCCCCCCccccccccccccCCCCCCCcceEEEEEEEeecCCCCCceEEEEEecC---CCceeEeEEEEe
Q 002417 117 GIMIQLISEDIDPVTNSGKSVESAVRGWLPKPVTSSNVNIFQYEANFGVPSDFGNPGAILITNLH---GKEFYLLEIVVH 193 (926)
Q Consensus 117 ~v~lqLvS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~fG~pgAi~v~n~h---~~e~fl~~i~l~ 193 (926)
+|.|+|+.+.-+ ++ +-.|.+... .....+. .++..+..+.+.|.+-.|.|.... ...|||++|+|.
T Consensus 20 ~V~i~L~G~~g~--s~-----~~~L~~~~~-~~F~rG~---~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~ 88 (120)
T cd01752 20 KVTITLYGAEGE--SE-----PHHLRDPEK-PIFERGS---VDSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVR 88 (120)
T ss_pred EEEEEEEeCCCC--cc-----cEEcCCCCc-cceeCCC---eeEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEE
Confidence 588888865532 11 122332111 1233333 355555667899999999997554 679999999998
Q ss_pred ecC-CCeEEEeecccccCCC
Q 002417 194 GFD-GGPVFFPANTWIHSRK 212 (926)
Q Consensus 194 ~~~-~~~i~F~cnsWV~~~~ 212 (926)
+.. +...+|+||+|+...+
T Consensus 89 ~~~t~~~~~F~~~rWl~~~~ 108 (120)
T cd01752 89 DLQTGKKWFFLCNDWLSVEE 108 (120)
T ss_pred ECCCCcEEEEEeCcEECCcC
Confidence 765 5678899999998764
No 13
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=96.78 E-value=0.0042 Score=60.08 Aligned_cols=54 Identities=19% Similarity=0.316 Sum_probs=43.4
Q ss_pred EEEEEeecCCCCCceEEEEEecC---CCceeEeEEEEeecC-CCeEEEeecccccCCCC
Q 002417 159 YEANFGVPSDFGNPGAILITNLH---GKEFYLLEIVVHGFD-GGPVFFPANTWIHSRKD 213 (926)
Q Consensus 159 ~~~~f~~~~~fG~pgAi~v~n~h---~~e~fl~~i~l~~~~-~~~i~F~cnsWV~~~~~ 213 (926)
|+.+++ +.++|..-.|.|...+ ...|||+.|.|++.+ +...+||||+|+...+.
T Consensus 43 f~~~v~-~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 43 LEMTFD-CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred eEEEEe-cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 443443 3999999999998765 779999999999877 56789999999977643
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=95.96 E-value=0.025 Score=55.96 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=42.3
Q ss_pred EEEEEEeecCCCCCceEEEEEecC---CCceeEeEEEEeecCC----CeEEEeecccccCCC
Q 002417 158 QYEANFGVPSDFGNPGAILITNLH---GKEFYLLEIVVHGFDG----GPVFFPANTWIHSRK 212 (926)
Q Consensus 158 ~~~~~f~~~~~fG~pgAi~v~n~h---~~e~fl~~i~l~~~~~----~~i~F~cnsWV~~~~ 212 (926)
.|.++ .+...|.+-.|.|.... ...|||..|+|.+... ...+|+||+|+...+
T Consensus 59 ~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~ 118 (129)
T cd01754 59 RFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDE 118 (129)
T ss_pred EEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCC
Confidence 56544 56789999999998654 7799999999987642 378999999997654
No 15
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=26.30 E-value=30 Score=35.89 Aligned_cols=50 Identities=32% Similarity=0.426 Sum_probs=29.0
Q ss_pred CCCChhhHHHHHHHHHhhhcCCCCcccccCeeeecccccCCCCCCCCCCCccccCCCCCCCCCCCCC
Q 002417 229 SQTPAGIKDLRREDLLSIRGNGKGERKHHERIYDYAVYNDLGNPDKDKDLARPVLSGEERPYPRRCR 295 (926)
Q Consensus 229 ~~tp~~l~~~R~~EL~~lrg~g~g~rk~~driYdyd~yndlG~pd~~~~~~rpvlgg~~~pyPRR~r 295 (926)
-+.|+.-.|..-=+|++---=| |++|-|||+.-| ..+.|--|| +| ||||=
T Consensus 85 v~~~a~~vK~~~i~iEe~hplG--------RL~DlDV~~~~g-----~~iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 85 VDAPALELKRLMIKLEESHPLG--------RLWDIDVLDADG-----KSLSRTDLG---LP-PRKCL 134 (165)
T ss_pred eCCCHHHHHHHHHHHHhCCchh--------hheeheeecCCC-----CCcCHHHcC---CC-CCeee
Confidence 3445443444444554433222 999999997433 346676666 34 88884
No 16
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=24.97 E-value=47 Score=36.19 Aligned_cols=24 Identities=33% Similarity=0.864 Sum_probs=20.4
Q ss_pred HHHHHHHcccccCcccccCCCHHHHHHHHH
Q 002417 708 KEWVESYVAHFYSEPNSVTSDVELQAWWSE 737 (926)
Q Consensus 708 ~~~V~~yv~~YY~sD~~V~~D~ELQaW~~E 737 (926)
.+||..||..|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 479999999999 445799999976
No 17
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=21.28 E-value=4.1e+02 Score=25.88 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=38.4
Q ss_pred EEEEEEeecCCCCCceEEEEEecC----------CCceeEeEEEEeecCCCeEEEeecc
Q 002417 158 QYEANFGVPSDFGNPGAILITNLH----------GKEFYLLEIVVHGFDGGPVFFPANT 206 (926)
Q Consensus 158 ~~~~~f~~~~~fG~pgAi~v~n~h----------~~e~fl~~i~l~~~~~~~i~F~cns 206 (926)
.|+.-+..|.+.|..-.|.+.=.. ...||++.|+|++.+.+.-...|.+
T Consensus 47 ~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 47 TYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred EEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 677777788888888877776222 4589999999998887777778877
No 18
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.42 E-value=1.5e+02 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHh
Q 002417 727 SDVELQAWWSEIKNKGHHDKRNEAWWPKLETKEDLSGIIT 766 (926)
Q Consensus 727 ~D~ELQaW~~Ei~~~G~~d~kd~p~~P~i~T~~eLv~~lT 766 (926)
++.+|+.|+.+ ||-... +...|+++|++.+-
T Consensus 5 s~~~L~~wL~~-----~gi~~~----~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS-----HGIPVP----KSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH-----cCCCCC----CCCCCHHHHHHHHH
Confidence 46899999987 332221 12369999998763
Done!