Query 002418
Match_columns 925
No_of_seqs 396 out of 1558
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 23:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079 Transcriptional repres 100.0 4E-121 9E-126 1033.0 27.8 682 46-923 52-739 (739)
2 KOG4442 Clathrin coat binding 100.0 4.2E-44 9.2E-49 409.5 13.3 179 699-913 79-262 (729)
3 KOG1080 Histone H3 (Lys4) meth 100.0 1.6E-31 3.4E-36 322.5 10.5 134 776-909 866-1003(1005)
4 KOG1082 Histone H3 (Lys9) meth 100.0 1E-28 2.2E-33 274.7 13.2 163 742-915 153-358 (364)
5 smart00317 SET SET (Su(var)3-9 99.9 7.9E-24 1.7E-28 192.9 11.7 113 778-890 2-116 (116)
6 KOG1083 Putative transcription 99.9 2.2E-24 4.9E-29 254.1 5.3 131 764-894 1165-1297(1306)
7 KOG1085 Predicted methyltransf 99.7 8.9E-18 1.9E-22 178.1 8.9 124 770-893 250-379 (392)
8 KOG1141 Predicted histone meth 99.7 1.3E-17 2.9E-22 193.3 8.8 73 837-909 1179-1260(1262)
9 COG2940 Proteins containing SE 99.6 1.4E-16 3.1E-21 183.5 2.8 144 766-909 322-478 (480)
10 PF00856 SET: SET domain; Int 99.5 2E-14 4.3E-19 135.9 5.3 105 787-891 1-162 (162)
11 KOG1081 Transcription factor N 98.9 2.2E-10 4.7E-15 132.2 2.1 132 764-911 302-437 (463)
12 KOG2589 Histone tail methylase 98.5 6.4E-08 1.4E-12 106.9 4.2 104 785-894 136-240 (453)
13 KOG2461 Transcription factor B 98.0 3.4E-06 7.4E-11 96.2 4.7 110 774-894 26-146 (396)
14 KOG1141 Predicted histone meth 97.6 3.5E-05 7.6E-10 92.0 2.4 73 735-817 768-840 (1262)
15 KOG1079 Transcriptional repres 97.2 0.00038 8.2E-09 82.6 5.4 137 39-216 15-152 (739)
16 PF00249 Myb_DNA-binding: Myb- 92.1 0.16 3.5E-06 41.3 3.4 46 204-251 1-48 (48)
17 smart00717 SANT SANT SWI3, AD 91.7 0.4 8.6E-06 37.3 5.1 43 555-599 2-45 (49)
18 cd00167 SANT 'SWI3, ADA2, N-Co 91.5 0.43 9.2E-06 36.6 5.0 41 556-598 1-42 (45)
19 smart00570 AWS associated with 91.0 0.079 1.7E-06 44.7 0.4 11 764-774 40-50 (51)
20 smart00717 SANT SANT SWI3, AD 90.8 0.19 4.2E-06 39.1 2.5 45 205-251 2-47 (49)
21 PF13921 Myb_DNA-bind_6: Myb-l 90.0 0.3 6.5E-06 41.1 3.2 42 207-251 1-44 (60)
22 PF05033 Pre-SET: Pre-SET moti 89.9 0.18 4E-06 46.9 2.0 37 675-711 45-103 (103)
23 cd00167 SANT 'SWI3, ADA2, N-Co 86.5 0.59 1.3E-05 35.8 2.5 43 207-251 2-45 (45)
24 KOG1171 Metallothionein-like p 80.3 0.61 1.3E-05 54.0 0.4 62 676-738 131-243 (406)
25 smart00570 AWS associated with 79.8 0.71 1.5E-05 39.1 0.6 28 684-711 17-44 (51)
26 KOG1337 N-methyltransferase [G 79.3 1.3 2.7E-05 52.3 2.6 40 850-892 239-278 (472)
27 PF03638 TCR: Tesmin/TSO1-like 75.7 1.6 3.5E-05 35.7 1.5 28 712-739 3-30 (42)
28 KOG4442 Clathrin coat binding 73.5 1.9 4.1E-05 52.7 2.0 36 684-719 83-121 (729)
29 PF00249 Myb_DNA-binding: Myb- 72.2 9.5 0.00021 31.0 5.2 43 555-598 2-45 (48)
30 PF05033 Pre-SET: Pre-SET moti 71.9 2.1 4.6E-05 39.8 1.6 44 713-768 47-103 (103)
31 KOG2084 Predicted histone tail 71.6 4.1 8.8E-05 46.6 4.0 38 850-891 208-246 (482)
32 PF03638 TCR: Tesmin/TSO1-like 64.1 4.4 9.6E-05 33.2 1.7 37 675-712 2-40 (42)
33 TIGR01557 myb_SHAQKYF myb-like 63.1 18 0.00038 31.3 5.2 45 555-600 4-53 (57)
34 KOG1082 Histone H3 (Lys9) meth 61.4 6 0.00013 45.3 2.8 42 673-714 104-171 (364)
35 PF13921 Myb_DNA-bind_6: Myb-l 61.3 17 0.00037 30.5 4.9 41 557-599 1-41 (60)
36 PF11616 EZH2_WD-Binding: WD r 60.5 11 0.00023 28.9 3.0 26 55-80 1-26 (30)
37 PF09111 SLIDE: SLIDE; InterP 59.1 6.1 0.00013 38.8 2.0 48 204-251 49-110 (118)
38 smart00508 PostSET Cysteine-ri 51.2 7.1 0.00015 29.0 0.8 14 897-910 3-16 (26)
39 PLN03212 Transcription repress 37.5 31 0.00068 38.0 3.4 46 204-252 78-124 (249)
40 PLN03212 Transcription repress 35.8 28 0.0006 38.5 2.7 46 204-251 25-72 (249)
41 PF14774 FAM177: FAM177 family 34.9 35 0.00076 34.0 3.0 66 174-241 18-97 (123)
42 TIGR02726 phenyl_P_delta pheny 34.6 62 0.0013 33.5 4.9 48 178-225 22-74 (169)
43 KOG3813 Uncharacterized conser 33.2 19 0.00041 43.2 1.0 22 675-696 306-328 (640)
44 PF06937 EURL: EURL protein; 29.9 22 0.00048 39.6 0.8 31 144-174 130-168 (285)
45 PF00856 SET: SET domain; Int 29.3 30 0.00064 32.6 1.5 17 872-888 2-18 (162)
46 PF08666 SAF: SAF domain; Int 29.2 33 0.00071 28.8 1.5 16 873-888 3-18 (63)
47 KOG1081 Transcription factor N 27.0 20 0.00043 42.8 -0.2 106 784-891 121-242 (463)
48 KOG4167 Predicted DNA-binding 26.3 88 0.0019 39.4 4.9 43 554-598 619-661 (907)
49 PLN03091 hypothetical protein; 23.9 69 0.0015 38.2 3.3 45 204-251 67-112 (459)
50 COG5259 RSC8 RSC chromatin rem 23.8 66 0.0014 38.5 3.1 38 553-592 278-315 (531)
51 PF13404 HTH_AsnC-type: AsnC-t 23.2 78 0.0017 25.6 2.6 39 211-251 4-42 (42)
52 smart00760 Bac_DnaA_C Bacteria 20.8 82 0.0018 26.9 2.4 20 226-245 3-22 (60)
53 PF11682 DUF3279: Protein of u 20.5 68 0.0015 32.3 2.1 37 276-322 18-56 (128)
No 1
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=100.00 E-value=4e-121 Score=1032.97 Aligned_cols=682 Identities=38% Similarity=0.562 Sum_probs=535.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhHhHhhhhhcccccccCCCcchhhhHHhhhhcccccCcCCCCCCCCCccccccCc
Q 002418 46 VAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSHISQEDGY 125 (925)
Q Consensus 46 i~~~R~~~ik~~~e~n~~~l~~~t~~~~~~~~~r~~~~~~~~~~~~~~ls~R~~~pl~~~~g~~~~~~~~~~~~~~d~~~ 125 (925)
++..++.+++++...+|.+...+|+.+- ++..+..... -+.+.++..+..-|++++|++..+..+.+...+-++
T Consensus 52 ~~~~~~~~~~~~~~~~r~k~~~~~~~~~-~~~~~~~i~~---~n~~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~-- 125 (739)
T KOG1079|consen 52 RRLKPVRSAKEVDGDIRVKVDLDTSIFD-FPSQKSPINE---LNAVAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGD-- 125 (739)
T ss_pred hhcccccccccccccccccccccccccc-Ccccccchhh---hcccccccccccCChhhhcceecccceecccccccc--
Confidence 7777777888888888888888888874 5555554322 224578888999999999999887777655543322
Q ss_pred cccccccCCCCCccccccccccCCCCCCCCceeeeecccccccccccccccccceecCCCCeeEeecCchhhhhhhhhhc
Q 002418 126 ASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEALICSDSEEEVIEEEEKK 205 (925)
Q Consensus 126 ~~~~v~~~~~~~~~~~~~~~lp~v~~~P~yttW~~l~rn~rM~edqsv~grR~IyyD~~g~Ealicsdseee~~eee~k~ 205 (925)
. |+.|++|.++.|++|++|||+||||||++||+|||+|+||| |.|+|++| ||+|||.+.+|+|+
T Consensus 126 ---~-----------v~~~k~~~ieel~~y~~~v~~dr~~~~~~d~v~ve~~~a~~-Q~~~e~dg-~D~~~e~~~~~ekr 189 (739)
T KOG1079|consen 126 ---E-----------VLDIKGPFIEELIKYDGKVHGDRNQRFMEDQVFVELVVALY-QYGGEHDG-SDDEEEEVLEEEKR 189 (739)
T ss_pred ---c-----------ccccccchhhhcccccceeeccccccchhhhhHHHHHHHHH-hcCCcccc-CCCccccchhhhcc
Confidence 1 35599999999999999999999999999999999999999 99999999 99999965599999
Q ss_pred ccCCccch-hhhhhhhhcCCcHHHHHHHHhhcC--CChhHHHHHHHHhhhccccCCCCCCCCCCccccchhhhc-HHHHh
Q 002418 206 DFVDSEDY-ILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILSKEESAVGGSNNGNDEHTMNNFLVKD-LEAAL 281 (925)
Q Consensus 206 ~f~~~ed~-~~~~~~~e~g~s~~vl~~~~~~~~--~~~sei~ery~~l~~~~~~~~~~~~~~~~~~~~~~l~k~-l~~al 281 (925)
+|.+++|. ++|++.+.++++++||++|+++|. +++++|+|||.+|+....+...... .-....++.|++. ++++|
T Consensus 190 ~~~e~~~~~~~~~~~~~~~~~~~if~~~~~~f~~k~~~~~lke~~~~l~~~~~p~~~e~~-~~~~id~~~ae~~~r~~~l 268 (739)
T KOG1079|consen 190 DFLEGEDDDIIESINKLSFPADKIFQAISSMFPDKLTASELKERYGELTSKSLPVAEEPE-CTPNIDGSSAEPVQREQAL 268 (739)
T ss_pred cccCcccchhhHhhhhhccchHHHHHHHhhhcccccchhhhhHHHhhhhhccccccCCcc-cccCCCccccChHHHHhhh
Confidence 99999999 899999999999999999999999 9999999999999965555433221 0112235566666 99999
Q ss_pred hhcccccccccccccccCcCCCCCccccCCCCCCCCCCCCCCCCCcccchhhccccccccccCCCCCCCcccccccCCCC
Q 002418 282 DSFDNLFCRRCLVFDCRLHGCSQDLVFPAEKQPLWYHLDEGNVPCGPHCYRSVLKSERNATACSPLNGDIKEKFISSSDG 361 (925)
Q Consensus 282 dsfdnlfCRRClvfDC~lHgcsq~lI~~~ekq~~~~~~~~d~~pCg~~Cy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (925)
||||||||||||+|||+||| +|+++||.++...|.++..+..|||+.||..+.+..+.. .+.+
T Consensus 269 ~sF~tlfCrrCl~ydC~lHg-~~~~~~pn~~~r~e~~~a~~~~pc~p~~~~~l~~~~~~~----------------m~~~ 331 (739)
T KOG1079|consen 269 HSFHTLFCRRCLKYDCFLHG-SQFHAFPNTKKRKEDEPALENEPCGPGCYGLLEGAKEKT----------------MSAV 331 (739)
T ss_pred cccccceeeeeeeeeccccC-ccccccccccccCCCCccccccCCCCchhhhhhccchhh----------------hhcc
Confidence 99999999999999999999 999999999999999999999999999999985433210 0000
Q ss_pred CCCccCCccccCCCcccccccccccccccccccCCCCccccccCCCccccccCCCCccccccccccccccchhHHHHHHH
Q 002418 362 AGAQTSSRKKFSGPARRVKSHQSESASSNAKNLSESSDSEVGQRQDTAFTHHSSPSKSKLVGKVGICKRKSKRVAERALV 441 (925)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 441 (925)
. .+.++..|.
T Consensus 332 ~--------------------------------------------------------~~~~p~~g~-------------- 341 (739)
T KOG1079|consen 332 V--------------------------------------------------------SKCPPIRGD-------------- 341 (739)
T ss_pred c--------------------------------------------------------ccCCCCcch--------------
Confidence 0 000000000
Q ss_pred HHHHhhhhhhccccccccCCCCCCccccccccccccccccCCCcccCCCCCCCccccccchhhcccccccccccCCCCCc
Q 002418 442 CKQKKQKKMAAFDLDSVASGGVLPSDMKLRSTSRKENEDANSSSHKHAKSSSSGKTRKKEMQIQDSRNLMHVRVPLGSSQ 521 (925)
Q Consensus 442 ~~~k~~~~~~~~~~~s~~~~~~~~~d~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 521 (925)
++||--.+++.+|- +.+...++.+..+......+..+.. |.+.+
T Consensus 342 ---~~qk~~~~~~~~s~--------------~~~~~~e~~g~~~d~~v~~~~~~~~-----------~~v~~-------- 385 (739)
T KOG1079|consen 342 ---IRQKLVKASSMDSD--------------DEHVEEEDKGHDDDDGVPRGFGGSV-----------NFVGE-------- 385 (739)
T ss_pred ---hhhhhcccccCCcc--------------hhhccccccCccccccccccccccc-----------ccccC--------
Confidence 12221111111111 1112223333323322221110000 10000
Q ss_pred cccCCCCCCCCCccchhhHHHhhhhccccccCCCCcchhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHhhhc
Q 002418 522 EIVSNPPAISTNDSLRKDEFVAENMCKQELSDEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTCSE 601 (925)
Q Consensus 522 ~~~~~~~~~~~~d~~~~~e~~~~~~~~~e~~~~~~Wt~~E~~L~~k~~~ifg~NsC~IA~~Ll~g~KtC~EV~~ym~~~~ 601 (925)
+..+..++.....+.+|.... ....+|+++|+.||++++.+||.|+|+|||+|+ +|||++||+|++...
T Consensus 386 ----~~~~~~s~~~~~c~~~~~~~~-----~~~~ew~~~ek~~fr~~~~~~~~n~c~Iar~l~--~ktC~~v~~~~~~e~ 454 (739)
T KOG1079|consen 386 ----DDTSTHSSTNSICQNPVHGKK-----DTNVEWNGAEKVLFRVGSTLYGTNRCSIARNLL--TKTCRQVYEYEQKEV 454 (739)
T ss_pred ----CcccccccccccccCcccccC-----CcccccchhhhHHHHhccccccchhhHHHHHhc--chHHHHHHHHhhcch
Confidence 001111111122211111100 125689999999999999999999999999994 599999999999766
Q ss_pred cccccccCccchhhcccccccCCCCCCCCccchhhhHHHHhhhcccccccccCCccchhhhhhccccCCCCCCCCCCCCC
Q 002418 602 NKLFCQAGDAATSLLEGYSKFDFNGTTGNNEVRRRSRYLRRRGRVRRLKYTWKSAAYHSIRKRITERKDQPCRQYNPCGC 681 (925)
Q Consensus 602 ~~~~~~~~~~~~s~~~~~~k~~~~~~~~~~~~~~r~r~~rrr~r~r~l~~~wks~~~~~irkri~~~kd~~~~~y~PC~c 681 (925)
.......+. + ....+++.|.+.+|+.++.|+..+.|++..++.+|. |+||+|
T Consensus 455 ~~~~~~~~~----------~------~~~~~~~~r~~~~r~~g~~r~k~q~kk~~~~~~v~~------------~qpC~h 506 (739)
T KOG1079|consen 455 LQGLYFDGR----------F------RVELPGPKRARKLRLWGRHRRKIQNKKDSRHTVVWN------------YQPCDH 506 (739)
T ss_pred hhceecccc----------c------ccccCcchhhHHHHhhhhHHHhhhcccccCCceeee------------cCcccC
Confidence 433322111 0 113456678899999999999999999888877653 555555
Q ss_pred CCC--CCCCCcccCCCccccCCCCCCccccCCCcCcccCCCCccCCCCcccccccccCCCCCCCcccccCCCCCCCCCCC
Q 002418 682 QTA--CGKQCPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQK 759 (925)
Q Consensus 682 ~~~--C~~~C~C~~~g~~Cek~C~C~~~C~NRf~GC~C~~~~C~t~~CpC~~~~rECDPd~C~~C~~~Cg~~~l~~p~~~ 759 (925)
+++ |+.+|+|+.++++||++|+|+++|.|||+||+| ++||++++|||+++.|||||++|..||+ .+..+
T Consensus 507 p~~c~c~~~C~C~~n~~~CEk~C~C~~dC~nrF~GC~C-k~QC~tkqCpC~~A~rECdPd~Cl~cg~--------~~~~d 577 (739)
T KOG1079|consen 507 PGPCNCGVGCPCIDNETFCEKFCYCSPDCRNRFPGCRC-KAQCNTKQCPCYLAVRECDPDVCLMCGN--------VDHFD 577 (739)
T ss_pred CCCCCCCCCCcccccCcchhhcccCCHHHHhcCCCCCc-ccccccCcCchhhhccccCchHHhccCc--------ccccc
Confidence 544 478999999999999999999999999999999 9999999999999999999999999986 23456
Q ss_pred CCcccccchhhhcccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCCCccccccCccEEE
Q 002418 760 GDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVL 839 (925)
Q Consensus 760 g~~~~C~N~~lqrg~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~~sYlF~L~~~~vI 839 (925)
+..+.|+|+.+|++++++|.|++|.+.|||||+++.+.|++||.||+||+|+++||++|+++|+..+.+|||+|+.+|+|
T Consensus 578 ~~~~~C~N~~l~~~~qkr~llapSdVaGwGlFlKe~v~KnefisEY~GE~IS~dEADrRGkiYDr~~cSflFnln~dyvi 657 (739)
T KOG1079|consen 578 SSKISCKNTNLQRGEQKRVLLAPSDVAGWGLFLKESVSKNEFISEYTGEIISHDEADRRGKIYDRYMCSFLFNLNNDYVI 657 (739)
T ss_pred cCccccccchhhhhhhcceeechhhccccceeeccccCCCceeeeecceeccchhhhhcccccccccceeeeeccccceE
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCccccccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCCCCCCcccCCCCCCCCCCCCCCCCCcc
Q 002418 840 DAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDRAPAWARKPEASGSKKEEGGPSSG 919 (925)
Q Consensus 840 DA~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~d~~pC~Cgsp~CrG~Kkde~~~S~~ 919 (925)
||+++||.+||+|||-+|||++.+++|+|++||+|||.|+|.+||||||||+|+.++++-|-+.+. +.+|++....|.
T Consensus 658 Ds~rkGnk~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs~~~~~k~~~~~~--~s~k~e~~~~q~ 735 (739)
T KOG1079|consen 658 DSTRKGNKIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYSPEHALKFVGIER--ESYKVELKIFQA 735 (739)
T ss_pred eeeeecchhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccCccccccccccCc--cccccchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999988877 778999888888
Q ss_pred chhc
Q 002418 920 RAKK 923 (925)
Q Consensus 920 rakk 923 (925)
+++|
T Consensus 736 ~~~~ 739 (739)
T KOG1079|consen 736 TQQK 739 (739)
T ss_pred hcCC
Confidence 7765
No 2
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-44 Score=409.45 Aligned_cols=179 Identities=32% Similarity=0.586 Sum_probs=166.0
Q ss_pred cCCCCCCccccCCCcCcccCCCCccCCCCcccccccccCCCCCCCcccccCCCCCCCCCCCCCcccccchhhhcccceeE
Q 002418 699 EKYCGCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRV 778 (925)
Q Consensus 699 ek~C~C~~~C~NRf~GC~C~~~~C~t~~CpC~~~~rECDPd~C~~C~~~Cg~~~l~~p~~~g~~~~C~N~~lqrg~~k~l 778 (925)
...|.|+.+|.||+. ..||.++.|..|++ .|+|++||+.+..+|
T Consensus 79 n~~~~cg~~CiNr~t-------------------~iECs~~~C~~cg~-----------------~C~NQRFQkkqyA~v 122 (729)
T KOG4442|consen 79 NGACACGEDCINRMT-------------------SIECSDRECPRCGV-----------------YCKNQRFQKKQYAKV 122 (729)
T ss_pred ccccccCccccchhh-------------------hcccCCccCCCccc-----------------cccchhhhhhccCce
Confidence 568999999999985 46778888887753 899999999999999
Q ss_pred EEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCC--CccccccCccEEEeccccCCccccccCCCC
Q 002418 779 LLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANHSPD 856 (925)
Q Consensus 779 ~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~--~sYlF~L~~~~vIDA~~~GN~aRFINHSC~ 856 (925)
+||.+..+||||+|.++|++|+||+||.||||+..|+.+|.+.|+..+ ++|+|.|...++|||+.+||++|||||||+
T Consensus 123 evF~Te~KG~GLRA~~dI~~g~FI~EY~GEVI~~~Ef~kR~~~Y~~d~~kh~Yfm~L~~~e~IDAT~KGnlaRFiNHSC~ 202 (729)
T KOG4442|consen 123 EVFLTEKKGCGLRAEEDIPKGQFILEYIGEVIEEKEFEKRVKRYAKDGIKHYYFMALQGGEYIDATKKGNLARFINHSCD 202 (729)
T ss_pred eEEEecCcccceeeccccCCCcEEeeeccccccHHHHHHHHHHHHhcCCceEEEEEecCCceecccccCcHHHhhcCCCC
Confidence 999999999999999999999999999999999999999999999875 578889999999999999999999999999
Q ss_pred CCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecC---CCCCCCcccCCCCCCCCCCCCC
Q 002418 857 PNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYR---YEPDRAPAWARKPEASGSKKEE 913 (925)
Q Consensus 857 PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg---~~~d~~pC~Cgsp~CrG~Kkde 913 (925)
|||++++|+|.|..||||||.|.|++||||||||+ |+.+.++|+||+++|+|.-.-+
T Consensus 203 PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~CyCgeanC~G~IGgk 262 (729)
T KOG4442|consen 203 PNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQPCYCGEANCRGWIGGK 262 (729)
T ss_pred CCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccccccCCcccccccCCC
Confidence 99999999999999999999999999999999997 5567889999999999986554
No 3
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=1.6e-31 Score=322.51 Aligned_cols=134 Identities=43% Similarity=0.805 Sum_probs=128.1
Q ss_pred eeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCC--CccccccCccEEEeccccCCccccccC
Q 002418 776 QRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANH 853 (925)
Q Consensus 776 k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~--~sYlF~L~~~~vIDA~~~GN~aRFINH 853 (925)
+.|..+++.++||||||+++|.+|++|+||+||+|.+.-|+.|+..|...+ .+|||.+++..||||+.+||+||||||
T Consensus 866 k~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~RE~~Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InH 945 (1005)
T KOG1080|consen 866 KYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLREARYERMGIGDSYLFRIDDEVVVDATKKGNIARFINH 945 (1005)
T ss_pred hhhccccccccccceeeccCccccceEEEeeceehhhhHHHHHHHHHhccCcccceeeecccceEEeccccCchhheeec
Confidence 458999999999999999999999999999999999999999999999875 799999999999999999999999999
Q ss_pred CCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCCC--CCCcccCCCCCCCCC
Q 002418 854 SPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP--DRAPAWARKPEASGS 909 (925)
Q Consensus 854 SC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~--d~~pC~Cgsp~CrG~ 909 (925)
||+|||+++++.|+|+.+|+|||.|+|.+||||||||.|.. +..||+||+|+|||+
T Consensus 946 sC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~kipClCgap~Crg~ 1003 (1005)
T KOG1080|consen 946 SCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDDKIPCLCGAPNCRGF 1003 (1005)
T ss_pred ccCCCceeeEEEecCeeEEEEEEecccccCceeeeeccccccccccccccCCCccccc
Confidence 99999999999999999999999999999999999999865 467999999999997
No 4
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1e-28 Score=274.71 Aligned_cols=163 Identities=25% Similarity=0.387 Sum_probs=134.2
Q ss_pred CCcccccCCCCCCCCCCCCCcccccchhhhcccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcc
Q 002418 742 RNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKI 821 (925)
Q Consensus 742 ~~C~~~Cg~~~l~~p~~~g~~~~C~N~~lqrg~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~ 821 (925)
.+|+..|+|+. .|.|+.+|++.+.+|+|++++.+||||++.+.|++|+||+||+||+++..++++|...
T Consensus 153 ~EC~~~C~C~~-----------~C~nRv~q~g~~~~leIfrt~~kGwgvRs~~~I~~G~fvcEyaGe~~t~~e~~~~~~~ 221 (364)
T KOG1082|consen 153 FECSVACGCHP-----------DCANRVVQKGLQFHLEVFRTPEKGWGVRTLDPIPAGEFVCEYAGEVLTSEEAQRRTHL 221 (364)
T ss_pred cccccCCCCCC-----------cCcchhhccccccceEEEecCCceeeecccccccCCCeeEEEeeEecChHHhhhcccc
Confidence 35677788854 8999999999999999999999999999999999999999999999999999987432
Q ss_pred cccC----CCcccc---------------------ccCccEEEeccccCCccccccCCCCCCceeEEEEEcCe----eEE
Q 002418 822 YDRE----NSSFLF---------------------NLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRV 872 (925)
Q Consensus 822 yd~~----~~sYlF---------------------~L~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~RI 872 (925)
+... +..+.+ .....++|||...||++|||||||.||+.+..+..++. ++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ida~~~GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i 301 (364)
T KOG1082|consen 222 REYLDDDCDAYSIADREWVDESPVGNTFVAPSLPGGPGRELLIDAKPHGNVARFINHSCSPNLLYQAVFQDEFVLLYLRI 301 (364)
T ss_pred ccccccccccchhhhccccccccccccccccccccCCCcceEEchhhcccccccccCCCCccceeeeeeecCCccchhee
Confidence 2221 112122 11346899999999999999999999999988877743 699
Q ss_pred EEEEccCCCCCCeeeeecCCCC--------------CCCcccCCCCCCCCCCCCCCC
Q 002418 873 GIFAKERISAGEELFYDYRYEP--------------DRAPAWARKPEASGSKKEEGG 915 (925)
Q Consensus 873 ~~fA~RDI~aGEELTfDYg~~~--------------d~~pC~Cgsp~CrG~Kkde~~ 915 (925)
+|||+++|.|||||||||+... ....|.|+...|++.......
T Consensus 302 ~ffa~~~I~p~~ELT~dYg~~~~~~~~~~~~~~~~~~~~~c~c~~~~cr~~~~~~~~ 358 (364)
T KOG1082|consen 302 GFFALRDISPGEELTLDYGKAYKLLVQDGANIYTPVMKKNCNCGLEKCRGLLGSAPC 358 (364)
T ss_pred eeeeccccCCCcccchhhcccccccccccccccccccchhhcCCCHHhCcccCCCcc
Confidence 9999999999999999999652 344689999999988655443
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.90 E-value=7.9e-24 Score=192.85 Aligned_cols=113 Identities=42% Similarity=0.744 Sum_probs=101.6
Q ss_pred EEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCC--CccccccCccEEEeccccCCccccccCCC
Q 002418 778 VLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDREN--SSFLFNLNDQFVLDAYRKGDKLKFANHSP 855 (925)
Q Consensus 778 l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~--~sYlF~L~~~~vIDA~~~GN~aRFINHSC 855 (925)
++++.++.+|+||||+.+|++|++|++|.|.++...++..+...|.... ..|+|.+...++||+...||++|||||||
T Consensus 2 ~~~~~~~~~G~gl~a~~~i~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~iNHsc 81 (116)
T smart00317 2 LEVFKSPGKGWGVRATEDIPKGEFIGEYVGEIITSEEAEERSKAYDTDGADSFYLFEIDSDLCIDARRKGNIARFINHSC 81 (116)
T ss_pred cEEEecCCCcEEEEECCccCCCCEEEEEEeEEECHHHHHHHHHHHHhcCCCCEEEEECCCCEEEeCCccCcHHHeeCCCC
Confidence 5677788999999999999999999999999999988887654444444 48899888889999999999999999999
Q ss_pred CCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeec
Q 002418 856 DPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDY 890 (925)
Q Consensus 856 ~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDY 890 (925)
.||+.+..+...+..+|.|+|+|||++|||||+||
T Consensus 82 ~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 82 EPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 99999998888888899999999999999999999
No 6
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=99.89 E-value=2.2e-24 Score=254.15 Aligned_cols=131 Identities=30% Similarity=0.602 Sum_probs=122.8
Q ss_pred cccchhhhc-ccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhh-hcccccCCCccccccCccEEEec
Q 002418 764 ECRNMKLLL-KQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKR-GKIYDRENSSFLFNLNDQFVLDA 841 (925)
Q Consensus 764 ~C~N~~lqr-g~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R-~k~yd~~~~sYlF~L~~~~vIDA 841 (925)
.|.|++|++ +..+.|.++..+..||||.|.++|++|+||+||+||||+..+++.| ...|.....+|+..+..+.+||+
T Consensus 1165 ~c~nqrm~r~e~cp~L~v~~gp~~G~~v~tk~PikagtfI~EYvGeVit~ke~e~~mmtl~~~d~~~~cL~I~p~l~id~ 1244 (1306)
T KOG1083|consen 1165 SCSNQRMQRHEECPPLEVFRGPKKGWGVRTKEPIKAGTFIMEYVGEVITEKEFEPRMMTLYHNDDDHYCLVIDPGLFIDI 1244 (1306)
T ss_pred hhhhHHhhhhccCCCcceeccCCCCccccccccccccchHHHHHHHHHHHHhhcccccccCCCCCcccccccCccccCCh
Confidence 477888876 4678999999999999999999999999999999999999999888 67788888999999999999999
Q ss_pred cccCCccccccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCCC
Q 002418 842 YRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP 894 (925)
Q Consensus 842 ~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~ 894 (925)
.++||.+||+||+|.|||.+++|.|+|..||++||+|||.+||||||||++..
T Consensus 1245 ~R~~n~~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ks 1297 (1306)
T KOG1083|consen 1245 PRMGNGARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFKS 1297 (1306)
T ss_pred hhccccccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccccc
Confidence 99999999999999999999999999999999999999999999999997644
No 7
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=99.72 E-value=8.9e-18 Score=178.08 Aligned_cols=124 Identities=27% Similarity=0.425 Sum_probs=108.0
Q ss_pred hhcccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCCC----ccccc-cCccEEEecccc
Q 002418 770 LLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENS----SFLFN-LNDQFVLDAYRK 844 (925)
Q Consensus 770 lqrg~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~~----sYlF~-L~~~~vIDA~~~ 844 (925)
+..+....+.+..-.++|.||+|+..+.+|+||.||.|.+|.-.|+..|+..|..... .|+|. ++..|+|||+.-
T Consensus 250 vl~g~~egl~~~~~dgKGRGv~a~~~F~rgdFVVEY~Gdliei~eAk~rE~~Ya~De~~GcYMYyF~h~sk~yCiDAT~e 329 (392)
T KOG1085|consen 250 VLKGTNEGLLEVYKDGKGRGVRAKVNFERGDFVVEYRGDLIEISEAKVREEQYANDEEIGCYMYYFEHNSKKYCIDATKE 329 (392)
T ss_pred HHhccccceeEEeeccccceeEeecccccCceEEEEecceeeechHHHHHHHhccCcccceEEEeeeccCeeeeeecccc
Confidence 3455556777777788999999999999999999999999999999999999976532 34453 567899999975
Q ss_pred -CCccccccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCC
Q 002418 845 -GDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYE 893 (925)
Q Consensus 845 -GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~ 893 (925)
+-++|.||||--+||.++++.++|.+++.++|.|||.+||||+||||..
T Consensus 330 t~~lGRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDR 379 (392)
T KOG1085|consen 330 TPWLGRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDR 379 (392)
T ss_pred cccchhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhcccc
Confidence 5577999999999999999999999999999999999999999999853
No 8
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=99.71 E-value=1.3e-17 Score=193.34 Aligned_cols=73 Identities=32% Similarity=0.567 Sum_probs=67.5
Q ss_pred EEEeccccCCccccccCCCCCCceeEEEEEcCe----eEEEEEEccCCCCCCeeeeecCCCCCCC-----cccCCCCCCC
Q 002418 837 FVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGD----HRVGIFAKERISAGEELFYDYRYEPDRA-----PAWARKPEAS 907 (925)
Q Consensus 837 ~vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~----~RI~~fA~RDI~aGEELTfDYg~~~d~~-----pC~Cgsp~Cr 907 (925)
|+|||...||++||+||||.||+.++.|+|+.+ +.|+|||.+-|+||.||||||+|..... .|.||+.+|+
T Consensus 1179 yvIDAk~eGNlGRfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1179 YVIDAKQEGNLGRFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQVATKELTCHCGAENCR 1258 (1262)
T ss_pred EEEecccccchhhhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeeccccccccccceEEEecChhhhh
Confidence 899999999999999999999999999999854 6899999999999999999999987644 4999999999
Q ss_pred CC
Q 002418 908 GS 909 (925)
Q Consensus 908 G~ 909 (925)
|.
T Consensus 1259 gr 1260 (1262)
T KOG1141|consen 1259 GR 1260 (1262)
T ss_pred cc
Confidence 85
No 9
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=99.61 E-value=1.4e-16 Score=183.49 Aligned_cols=144 Identities=35% Similarity=0.520 Sum_probs=119.4
Q ss_pred cchhhhcccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCCCccccc-cCc-cEEEeccc
Q 002418 766 RNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFN-LND-QFVLDAYR 843 (925)
Q Consensus 766 ~N~~lqrg~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~~sYlF~-L~~-~~vIDA~~ 843 (925)
.|..-.........+..+...|||+||.+.|++|++|.+|.|+++...++..|...|...+..+.|. +.. ..++|+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~fa~~~i~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 401 (480)
T COG2940 322 LNSNGCKKRREPNVVQESEIKGYGVFALESIKKGEFIIEYHGEIIRRKEAREREENYDLLGNEFSFGLLEDKDKVRDSQK 401 (480)
T ss_pred hhhcccccccchhhhhhhcccccceeehhhccchHHHHHhcCcccchHHHHhhhccccccccccchhhccccchhhhhhh
Confidence 3333334445566777888999999999999999999999999999999999888775555544443 333 78899999
Q ss_pred cCCccccccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCCCCC-----------CcccCCCCCCCCC
Q 002418 844 KGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEPDR-----------APAWARKPEASGS 909 (925)
Q Consensus 844 ~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~d~-----------~pC~Cgsp~CrG~ 909 (925)
.|+.+|||||||.|||.+....+.|..++.++|+|||.+||||++||+...+. ..|.|+.+.|++.
T Consensus 402 ~g~~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 402 AGDVARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred cccccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 99999999999999999988887777899999999999999999999865432 3688999999865
No 10
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.49 E-value=2e-14 Score=135.92 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=74.0
Q ss_pred CceEEeccccCCCcEEEEEecccccHHHHhhh---hcccc---------------------------------------c
Q 002418 787 GWGAFLKNSVGKHEYLGEYTGELISHREADKR---GKIYD---------------------------------------R 824 (925)
Q Consensus 787 G~GLFA~edI~kGefI~EY~GElIs~~Ea~~R---~k~yd---------------------------------------~ 824 (925)
|+||||+++|++|++|+++.+.+++..+.... ...+. .
T Consensus 1 GrGl~At~dI~~Ge~I~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF00856_consen 1 GRGLFATRDIKAGEVILIPRPAILTPDEVSPQPELLRLQLSKALEEQSRSDFSIQKKQKAEKSERSPQLESLHSISLRSE 80 (162)
T ss_dssp SEEEEESS-B-TTEEEEEESEEEEEHHHHHCHHHHSHHTTCSSSCSHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHTTT
T ss_pred CEEEEECccCCCCCEEEEECcceEEehhhhhcccchhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999988776441 00000 0
Q ss_pred CCCc--cc-------------cccCccEEEeccccCCccccccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeee
Q 002418 825 ENSS--FL-------------FNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYD 889 (925)
Q Consensus 825 ~~~s--Yl-------------F~L~~~~vIDA~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfD 889 (925)
.... +. .........++.....++.|+||||.|||.+..........+.|+|.|+|++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~is 160 (162)
T PF00856_consen 81 LQFSQAFQWSWFISWTRSDFSSRSFSEDDRDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFIS 160 (162)
T ss_dssp CCTCCHHHHHHHHHHHHHEEEEEEETTEEEEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEE
T ss_pred ccccccccchhhccccceeeeccccccccccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEE
Confidence 0000 00 00012244566677789999999999999888776677889999999999999999999
Q ss_pred cC
Q 002418 890 YR 891 (925)
Q Consensus 890 Yg 891 (925)
||
T Consensus 161 YG 162 (162)
T PF00856_consen 161 YG 162 (162)
T ss_dssp ST
T ss_pred EC
Confidence 97
No 11
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=98.95 E-value=2.2e-10 Score=132.17 Aligned_cols=132 Identities=27% Similarity=0.408 Sum_probs=102.8
Q ss_pred cccchhhhcccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccC--CCccccccCccEEEec
Q 002418 764 ECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRE--NSSFLFNLNDQFVLDA 841 (925)
Q Consensus 764 ~C~N~~lqrg~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~--~~sYlF~L~~~~vIDA 841 (925)
.|.|+.+....... + .+ +|..+|.+| +|++|...+...|...-... ...|+..+..+.+||+
T Consensus 302 ~~~~~~~sk~~~~e------~-~~---~~~~~~~k~------vg~~i~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~id~ 365 (463)
T KOG1081|consen 302 RCHNQQFSKESYPE------P-QK---TAKADIRKG------VGEVIDDKECKARLQRVKESDLVDFYMVFIQKDRIIDA 365 (463)
T ss_pred ccccchhhhhcccc------c-ch---hhHHhhhcc------cCcccchhhheeehhhhhccchhhhhhhhhhccccccc
Confidence 78888876654433 1 12 888999998 89999999987764322222 2234333444449999
Q ss_pred cccCCccccccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCCC--CCCcccCCCCCCCCCCC
Q 002418 842 YRKGDKLKFANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP--DRAPAWARKPEASGSKK 911 (925)
Q Consensus 842 ~~~GN~aRFINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~--d~~pC~Cgsp~CrG~Kk 911 (925)
..+||.+||+||||+|||....|.+.++.++++||.+.|++||||||+|.+.. ....|.|++.+|.+.+.
T Consensus 366 ~~~~n~sr~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~~~~~~~~~~~~e~~~~~~~ 437 (463)
T KOG1081|consen 366 GPKGNYSRFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNCEGNEKRCCCGSENCTETKG 437 (463)
T ss_pred ccccchhhhhcccCCCceeechhheecccccccccccccccchhhhheeeccccCCcceEeecccccccCCc
Confidence 99999999999999999999999999999999999999999999999998763 34468888888887643
No 12
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.52 E-value=6.4e-08 Score=106.91 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=75.4
Q ss_pred CCCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccC-CCccccccCccEEEeccccCCccccccCCCCCCceeEE
Q 002418 785 VSGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRE-NSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKV 863 (925)
Q Consensus 785 ~kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~-~~sYlF~L~~~~vIDA~~~GN~aRFINHSC~PNc~~~~ 863 (925)
..|--|.+++.+.+|+-|--.+|-|+.-.+++++.-..... +.+.||.-... -|...-..++||||.|.|||.+..
T Consensus 136 ~~gAkivst~~w~~ndkIe~LvGcIaeLse~eE~~ll~~g~nDFSvmyStRk~---caqLwLGPaafINHDCrpnCkFvs 212 (453)
T KOG2589|consen 136 QNGAKIVSTKSWSRNDKIELLVGCIAELSEAEERSLLRGGGNDFSVMYSTRKR---CAQLWLGPAAFINHDCRPNCKFVS 212 (453)
T ss_pred CCCceEEeeccccCCccHHHhhhhhhhcChhhhHHHHhccCCceeeeeecccc---hhhheeccHHhhcCCCCCCceeec
Confidence 36788999999999999999999998877777763222222 22333322111 122233568999999999997643
Q ss_pred EEEcCeeEEEEEEccCCCCCCeeeeecCCCC
Q 002418 864 IMVAGDHRVGIFAKERISAGEELFYDYRYEP 894 (925)
Q Consensus 864 v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~ 894 (925)
.|..++.|-++|||.||||||--||.++
T Consensus 213 ---~g~~tacvkvlRDIePGeEITcFYgs~f 240 (453)
T KOG2589|consen 213 ---TGRDTACVKVLRDIEPGEEITCFYGSGF 240 (453)
T ss_pred ---CCCceeeeehhhcCCCCceeEEeecccc
Confidence 4768899999999999999999998543
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=98.05 E-value=3.4e-06 Score=96.16 Aligned_cols=110 Identities=18% Similarity=0.280 Sum_probs=82.1
Q ss_pred cceeEEEEEcCC--CCceEEeccccCCCcEEEEEecccccHHHHhhhhcccccCCCcccccc---C-ccEEEeccc--cC
Q 002418 774 QQQRVLLGRSDV--SGWGAFLKNSVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNL---N-DQFVLDAYR--KG 845 (925)
Q Consensus 774 ~~k~l~V~kS~~--kG~GLFA~edI~kGefI~EY~GElIs~~Ea~~R~k~yd~~~~sYlF~L---~-~~~vIDA~~--~G 845 (925)
....|.|..+.+ .|.||++...|++|+-.+-|.|+++....- ...+..|+|.+ + ..++||++. ..
T Consensus 26 LP~~l~i~~Ssv~~~~lgV~s~~~i~~G~~FGP~~G~~~~~~~~-------~~~n~~y~W~I~~~d~~~~~iDg~d~~~s 98 (396)
T KOG2461|consen 26 LPPELRIKPSSVPVTGLGVWSNASILPGTSFGPFEGEIIASIDS-------KSANNRYMWEIFSSDNGYEYIDGTDEEHS 98 (396)
T ss_pred CCCceEeeccccCCccccccccccccCcccccCccCcccccccc-------ccccCcceEEEEeCCCceEEeccCChhhc
Confidence 567788888766 789999999999999999999998221110 12234555544 2 348899975 68
Q ss_pred CccccccCCCC---CCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCCCC
Q 002418 846 DKLKFANHSPD---PNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRYEP 894 (925)
Q Consensus 846 N~aRFINHSC~---PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~~~ 894 (925)
|++||+|=+++ -|+.+.. ....|.++|+|+|.+||||.++|+-++
T Consensus 99 NWmRYV~~Ar~~eeQNL~A~Q----~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 99 NWMRYVNSARSEEEQNLLAFQ----IGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred ceeeeecccCChhhhhHHHHh----ccCceEEEecccCCCCCeEEEEeccch
Confidence 99999999885 5775422 344688999999999999999997543
No 14
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=97.55 E-value=3.5e-05 Score=92.04 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=60.5
Q ss_pred ccCCCCCCCcccccCCCCCCCCCCCCCcccccchhhhcccceeEEEEEcCCCCceEEeccccCCCcEEEEEecccccHHH
Q 002418 735 ECDPDVCRNCWISCGDGSLGVPDQKGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKNSVGKHEYLGEYTGELISHRE 814 (925)
Q Consensus 735 ECDPd~C~~C~~~Cg~~~l~~p~~~g~~~~C~N~~lqrg~~k~l~V~kS~~kG~GLFA~edI~kGefI~EY~GElIs~~E 814 (925)
||-|.-=.+|...|.|.. ..|.|+.+|.|.+.++.++++..+|||++...+|.+|.||+-|.|.++++.-
T Consensus 768 e~~ptg~yEc~k~ckc~~----------~~C~nrmvqhg~qvRlq~fkt~~kGWg~rclddi~~g~fVciy~g~~l~~~~ 837 (1262)
T KOG1141|consen 768 EIRPTGPYECLKACKCCG----------PDCLNRMVQHGYQVRLQRFKTIHKGWGRRCLDDITGGNFVCIYPGGALLHQI 837 (1262)
T ss_pred HhcCCCHHHHHHhhccCc----------HHHHHHHhhcCceeEeeeccccccccceEeeeecCCceEEEEecchhhhhhh
Confidence 555555455555555432 3899999999999999999999999999999999999999999999988776
Q ss_pred Hhh
Q 002418 815 ADK 817 (925)
Q Consensus 815 a~~ 817 (925)
++.
T Consensus 838 sdk 840 (1262)
T KOG1141|consen 838 SDK 840 (1262)
T ss_pred chh
Confidence 654
No 15
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=97.20 E-value=0.00038 Score=82.62 Aligned_cols=137 Identities=23% Similarity=0.152 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHhHhhhhhcccccccCCCcchhhhHHhhhhcccccCcCCCCCCCCCc
Q 002418 39 IDCLKNQVAADHFVSVQRRVEKNRQKLIGVTNHLYRLSLERRNNQTINTHGSVDLLTKRQREALGVQNGIDVSSGDRDSH 118 (925)
Q Consensus 39 i~~lk~qi~~~R~~~ik~~~e~n~~~l~~~t~~~~~~~~~r~~~~~~~~~~~~~~ls~R~~~pl~~~~g~~~~~~~~~~~ 118 (925)
++|+|| ..+...+|.+...|+.....-+..+. ..|.+|+.+|+...--.+-....++..
T Consensus 15 ~rq~~r---~~~~~~~K~~~~~~~~~~~e~i~~~~------------------~E~k~~~~~~~~~~~~~~~~~r~k~~~ 73 (739)
T KOG1079|consen 15 SRQRKR---VREADEGKSAKSKNPADRLEKIKILN------------------CEWKKRRLKPVRSAKEVDGDIRVKVDL 73 (739)
T ss_pred HHHHHH---HHHHhhhhhhcccCHHHHHHHHHHHH------------------HHHhhhhcccccccccccccccccccc
Confidence 677777 56666777777777776666666663 334457777766554333333333222
Q ss_pred cccccCccccccccCCCCCccccccccccCCCCCCCCceeeeecccccccccccccccccceecCCCCeeE-eecCchhh
Q 002418 119 ISQEDGYASTAVYGSSNPTKNIIRPIKLNDNKRLPPYTTWIFLDRNQRMTEDQSVMSRRRIYYDQNGGEAL-ICSDSEEE 197 (925)
Q Consensus 119 ~~~d~~~~~~~v~~~~~~~~~~~~~~~lp~v~~~P~yttW~~l~rn~rM~edqsv~grR~IyyD~~g~Eal-icsdseee 197 (925)
. +.++. ++.+.++.-.+..|..+|.|++|.++++|+ |++|.+|++ +|+| -|.|-+ |--+-
T Consensus 74 ~--------~~~~~---~~~~~~~i~~~n~~~~v~~~~~~~~~q~nf-mv~~~~~~~--~ip~--~~~~v~~~k~~~--- 134 (739)
T KOG1079|consen 74 D--------TSIFD---FPSQKSPINELNAVAQVPIMYSWPPLQQNF-MVEDETVLH--NIPY--MGDEVLDIKGPF--- 134 (739)
T ss_pred c--------ccccc---CcccccchhhhcccccccccccCChhhhcc-eecccceec--cccc--ccccccccccch---
Confidence 1 01111 345556777899999999999999999999 999999999 9999 444433 32222
Q ss_pred hhhhhhhcccCCccchhhh
Q 002418 198 VIEEEEKKDFVDSEDYILR 216 (925)
Q Consensus 198 ~~eee~k~~f~~~ed~~~~ 216 (925)
+||=.+.+|--.-|+.-+
T Consensus 135 -ieel~~y~~~v~~dr~~~ 152 (739)
T KOG1079|consen 135 -IEELIKYDGKVHGDRNQR 152 (739)
T ss_pred -hhhcccccceeecccccc
Confidence 222234555555566544
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=92.11 E-value=0.16 Score=41.26 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=39.1
Q ss_pred hcccCCccchhhhhhhhhcCCcHHHHHHHHhhcC--CChhHHHHHHHHhh
Q 002418 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS--RSPSEVKARYEILS 251 (925)
Q Consensus 204 k~~f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~~--~~~sei~ery~~l~ 251 (925)
|..|++.||.+|-.++++||.. -...|++.|+ .|..+++.||..|.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 4568889999999999999998 6778888888 99999999999874
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=91.71 E-value=0.4 Score=37.26 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCcchhHhHHHHHHHHhhC-CccHHHHHhhhCCCccHHHHHHHHhh
Q 002418 555 KSWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMTC 599 (925)
Q Consensus 555 ~~Wt~~E~~L~~k~~~ifg-~NsC~IA~~Ll~g~KtC~EV~~ym~~ 599 (925)
..|++.|..+|..++..|| .+...||..| +.+|-.+|..+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~--~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL--PGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4799999999999999999 9999999987 58999999887654
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=91.47 E-value=0.43 Score=36.60 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=36.8
Q ss_pred CcchhHhHHHHHHHHhhC-CccHHHHHhhhCCCccHHHHHHHHh
Q 002418 556 SWKTIEKGLFDKGVEIFG-RNSCLIARNLLNGLKTCWEVFQYMT 598 (925)
Q Consensus 556 ~Wt~~E~~L~~k~~~ifg-~NsC~IA~~Ll~g~KtC~EV~~ym~ 598 (925)
.||..|..+|..++..|| .+...||+.+ +.+|-.+|-.|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~--~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL--PGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc--CCCCHHHHHHHHH
Confidence 599999999999999999 8999999987 5699999987764
No 19
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=90.97 E-value=0.079 Score=44.74 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.8
Q ss_pred cccchhhhccc
Q 002418 764 ECRNMKLLLKQ 774 (925)
Q Consensus 764 ~C~N~~lqrg~ 774 (925)
.|+|++||+++
T Consensus 40 ~C~NqrFqk~~ 50 (51)
T smart00570 40 YCSNQRFQKRQ 50 (51)
T ss_pred CccCcccccCc
Confidence 89999999875
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=90.82 E-value=0.19 Score=39.06 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.0
Q ss_pred cccCCccchhhhhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhh
Q 002418 205 KDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (925)
Q Consensus 205 ~~f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~~-~~~sei~ery~~l~ 251 (925)
..|++.||.+|-..+.+||.. -+..|+.+|+ .++.+|+.||..+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 468889999999999999952 3788888888 99999999999876
No 21
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=90.05 E-value=0.3 Score=41.12 Aligned_cols=42 Identities=24% Similarity=0.465 Sum_probs=35.0
Q ss_pred cCCccchhhhhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHH-hh
Q 002418 207 FVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEI-LS 251 (925)
Q Consensus 207 f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~~-~~~sei~ery~~-l~ 251 (925)
|++.||.+|....++||.+ ...||++|+ +++.+|+.||.. |.
T Consensus 1 WT~eEd~~L~~~~~~~g~~---W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGND---WKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCcC---HHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 4566899999999999963 788999999 999999999999 76
No 22
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=89.89 E-value=0.18 Score=46.87 Aligned_cols=37 Identities=38% Similarity=1.048 Sum_probs=22.0
Q ss_pred CCCCCCCCCCC--CCCCcccCCCc--------------------cccCCCCCCccccCC
Q 002418 675 QYNPCGCQTAC--GKQCPCLLNGT--------------------CCEKYCGCPKSCKNR 711 (925)
Q Consensus 675 ~y~PC~c~~~C--~~~C~C~~~g~--------------------~Cek~C~C~~~C~NR 711 (925)
....|+|.+.| ...|.|..... +|...|+|+..|.||
T Consensus 45 ~~~~C~C~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~~C~NR 103 (103)
T PF05033_consen 45 FLQGCDCSGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSPSCRNR 103 (103)
T ss_dssp GTS----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-TTSTT-
T ss_pred cCccCccCCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCCCCCCC
Confidence 45689999889 47899986432 799999999999987
No 23
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=86.45 E-value=0.59 Score=35.82 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=36.4
Q ss_pred cCCccchhhhhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhh
Q 002418 207 FVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (925)
Q Consensus 207 f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~~-~~~sei~ery~~l~ 251 (925)
|++.||.+|-..+.++|.. -...|+++|+ .+..+|+.||..+.
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 6777899999999999952 3788888888 99999999998763
No 24
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism]
Probab=80.29 E-value=0.61 Score=54.03 Aligned_cols=62 Identities=34% Similarity=0.974 Sum_probs=50.7
Q ss_pred CCCCCCC-CCCC-CCCcccCCCccccCCCCCCccccCCC-----------------------------------------
Q 002418 676 YNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF----------------------------------------- 712 (925)
Q Consensus 676 y~PC~c~-~~C~-~~C~C~~~g~~Cek~C~C~~~C~NRf----------------------------------------- 712 (925)
-.+|+|+ ..|- -.|.|...|.+|..+|.|- +|.|..
T Consensus 131 k~~~~ck~SkclklYCeCFAsG~yC~~~CnCv-nC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~ 209 (406)
T KOG1171|consen 131 KKKCNCKKSKCLKLYCECFASGVYCTGPCNCV-NCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASK 209 (406)
T ss_pred ccCCCchHHHHHHHhHHHHhhcccccCCccee-eccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhc
Confidence 3456664 4454 4699999999999999998 677762
Q ss_pred --------cCcccCCCCccCCCCcccccccccCC
Q 002418 713 --------RGCHCAKSQCRSRQCPCFAADRECDP 738 (925)
Q Consensus 713 --------~GC~C~~~~C~t~~CpC~~~~rECDP 738 (925)
.||+|.+..|-.+-|.||+++.-|..
T Consensus 210 ~~~sa~hkkGC~CkkSgClKkYCECyQa~vlCS~ 243 (406)
T KOG1171|consen 210 TPASARHKKGCNCKKSGCLKKYCECYQAGVLCSS 243 (406)
T ss_pred cchhhhhcCCCCCccccchHHHHHHHhcCCCccc
Confidence 68999999999999999999988854
No 25
>smart00570 AWS associated with SET domains. subdomain of PRESET
Probab=79.76 E-value=0.71 Score=39.11 Aligned_cols=28 Identities=32% Similarity=0.743 Sum_probs=14.2
Q ss_pred CCCCCCcccCCCccccCCCCCCccccCC
Q 002418 684 ACGKQCPCLLNGTCCEKYCGCPKSCKNR 711 (925)
Q Consensus 684 ~C~~~C~C~~~g~~Cek~C~C~~~C~NR 711 (925)
+||++|.....-.+|...|.|+..|.|+
T Consensus 17 ~CgsdClNR~l~~EC~~~C~~G~~C~Nq 44 (51)
T smart00570 17 ACGSDCLNRMLLIECSSDCPCGSYCSNQ 44 (51)
T ss_pred CcchHHHHHHHhhhcCCCCCCCcCccCc
Confidence 4444444444444555555555555553
No 26
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=79.34 E-value=1.3 Score=52.30 Aligned_cols=40 Identities=38% Similarity=0.527 Sum_probs=30.9
Q ss_pred cccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCCeeeeecCC
Q 002418 850 FANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGEELFYDYRY 892 (925)
Q Consensus 850 FINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEELTfDYg~ 892 (925)
+.||++.+. ...+..-+..+.+++.++|.+||||+++||.
T Consensus 239 ~~NH~~~~~---~~~~~~~d~~~~l~~~~~v~~geevfi~YG~ 278 (472)
T KOG1337|consen 239 LLNHSPEVI---KAGYNQEDEAVELVAERDVSAGEEVFINYGP 278 (472)
T ss_pred hhccCchhc---cccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence 579999982 2223333458999999999999999999974
No 27
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=75.72 E-value=1.6 Score=35.69 Aligned_cols=28 Identities=46% Similarity=1.143 Sum_probs=25.8
Q ss_pred CcCcccCCCCccCCCCcccccccccCCC
Q 002418 712 FRGCHCAKSQCRSRQCPCFAADRECDPD 739 (925)
Q Consensus 712 f~GC~C~~~~C~t~~CpC~~~~rECDPd 739 (925)
..||.|.++.|...-|.||+++..|.+.
T Consensus 3 ~~gC~Ckks~Clk~YC~Cf~~g~~C~~~ 30 (42)
T PF03638_consen 3 KKGCNCKKSKCLKLYCECFQAGRFCTPN 30 (42)
T ss_pred CCCCcccCcChhhhhCHHHHCcCcCCCC
Confidence 5799999999999999999999999885
No 28
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.54 E-value=1.9 Score=52.72 Aligned_cols=36 Identities=39% Similarity=0.809 Sum_probs=31.1
Q ss_pred CCCCCCcccCCCccccC-CCC-CCccccC-CCcCcccCC
Q 002418 684 ACGKQCPCLLNGTCCEK-YCG-CPKSCKN-RFRGCHCAK 719 (925)
Q Consensus 684 ~C~~~C~C~~~g~~Cek-~C~-C~~~C~N-Rf~GC~C~~ 719 (925)
.||.+|.|...+++|.. .|. |+..|.| ||+-|.|++
T Consensus 83 ~cg~~CiNr~t~iECs~~~C~~cg~~C~NQRFQkkqyA~ 121 (729)
T KOG4442|consen 83 ACGEDCINRMTSIECSDRECPRCGVYCKNQRFQKKQYAK 121 (729)
T ss_pred ccCccccchhhhcccCCccCCCccccccchhhhhhccCc
Confidence 57899999999999999 999 9999999 688666643
No 29
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=72.15 E-value=9.5 Score=30.97 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=34.2
Q ss_pred CCcchhHhHHHHHHHHhhCCc-cHHHHHhhhCCCccHHHHHHHHh
Q 002418 555 KSWKTIEKGLFDKGVEIFGRN-SCLIARNLLNGLKTCWEVFQYMT 598 (925)
Q Consensus 555 ~~Wt~~E~~L~~k~~~ifg~N-sC~IA~~Ll~g~KtC~EV~~ym~ 598 (925)
..||+.|..+|..++..||.+ .=.||..+ ++++|=.++-.+.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~-~~~Rt~~qc~~~~~ 45 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRM-PGGRTAKQCRSRYQ 45 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHH-SSSSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 469999999999999999998 88999877 33788777766554
No 30
>PF05033 Pre-SET: Pre-SET motif; InterPro: IPR007728 This region is found in a number of histone lysine methyltransferases (HMTase), N-terminal to the SET domain; it is generally described as the pre-SET domain. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils and stabilising the SET domain. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site [] when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity []. ; GO: 0008270 zinc ion binding, 0018024 histone-lysine N-methyltransferase activity, 0034968 histone lysine methylation, 0005634 nucleus; PDB: 3K5K_A 2O8J_D 3RJW_B 1ML9_A 1PEG_B 1MVH_A 1MVX_A 3BO5_A 2RFI_B 3MO5_B ....
Probab=71.89 E-value=2.1 Score=39.80 Aligned_cols=44 Identities=30% Similarity=0.788 Sum_probs=19.9
Q ss_pred cCcccCCCCc-cCCCCcccccccc------------cCCCCCCCcccccCCCCCCCCCCCCCcccccch
Q 002418 713 RGCHCAKSQC-RSRQCPCFAADRE------------CDPDVCRNCWISCGDGSLGVPDQKGDNYECRNM 768 (925)
Q Consensus 713 ~GC~C~~~~C-~t~~CpC~~~~rE------------CDPd~C~~C~~~Cg~~~l~~p~~~g~~~~C~N~ 768 (925)
.||.| .+.| ....|.|...... -.+..-.+|+..|+|+. .|.||
T Consensus 47 ~~C~C-~~~C~~~~~C~C~~~~~~~~~Y~~~g~l~~~~~~~i~EC~~~C~C~~-----------~C~NR 103 (103)
T PF05033_consen 47 QGCDC-SGDCSNPSNCECLQRNGGIFAYDSNGRLRIPDKPPIFECNDNCGCSP-----------SCRNR 103 (103)
T ss_dssp S-----SSSSTCTTTSHHHCCTSSS-SB-TTSSBSSSSTSEEE---TTSSS-T-----------TSTT-
T ss_pred ccCcc-CCCCCCCCCCcCccccCccccccCCCcCccCCCCeEEeCCCCCCCCC-----------CCCCC
Confidence 35555 2335 4556666555432 23444557888888864 78885
No 31
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=71.56 E-value=4.1 Score=46.58 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=27.9
Q ss_pred cccCCCCCCceeEEEEEcCeeEEEEEEccCCCCCC-eeeeecC
Q 002418 850 FANHSPDPNCYAKVIMVAGDHRVGIFAKERISAGE-ELFYDYR 891 (925)
Q Consensus 850 FINHSC~PNc~~~~v~V~G~~RI~~fA~RDI~aGE-ELTfDYg 891 (925)
++||||.||+. +...+.. +.+++..++.+++ ||++.|-
T Consensus 208 ~~~hsC~pn~~---~~~~~~~-~~~~~~~~~~~~~~~l~~~y~ 246 (482)
T KOG2084|consen 208 LFNHSCFPNIS---VIFDGRG-LALLVPAGIDAGEEELTISYT 246 (482)
T ss_pred hcccCCCCCeE---EEECCce-eEEEeecccCCCCCEEEEeec
Confidence 78999999996 3334444 4466777777776 9999994
No 32
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].
Probab=64.08 E-value=4.4 Score=33.19 Aligned_cols=37 Identities=32% Similarity=0.923 Sum_probs=30.6
Q ss_pred CCCCCCCC-CCCC-CCCcccCCCccccCCCCCCccccCCC
Q 002418 675 QYNPCGCQ-TACG-KQCPCLLNGTCCEKYCGCPKSCKNRF 712 (925)
Q Consensus 675 ~y~PC~c~-~~C~-~~C~C~~~g~~Cek~C~C~~~C~NRf 712 (925)
+..+|.|. ..|- .-|.|...|.+|...|.|. +|.|..
T Consensus 2 ~~~gC~Ckks~Clk~YC~Cf~~g~~C~~~C~C~-~C~N~~ 40 (42)
T PF03638_consen 2 KKKGCNCKKSKCLKLYCECFQAGRFCTPNCKCQ-NCKNTE 40 (42)
T ss_pred CCCCCcccCcChhhhhCHHHHCcCcCCCCcccC-CCCCcC
Confidence 34689995 7786 5799999999999999995 888864
No 33
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=63.14 E-value=18 Score=31.33 Aligned_cols=45 Identities=16% Similarity=-0.003 Sum_probs=36.9
Q ss_pred CCcchhHhHHHHHHHHhhCC-cc---HHHHHhhhCCCc-cHHHHHHHHhhh
Q 002418 555 KSWKTIEKGLFDKGVEIFGR-NS---CLIARNLLNGLK-TCWEVFQYMTCS 600 (925)
Q Consensus 555 ~~Wt~~E~~L~~k~~~ifg~-Ns---C~IA~~Ll~g~K-tC~EV~~ym~~~ 600 (925)
..||+.|-.+|..+++.||. +. =.|+.++ ..++ |-.+|-++++..
T Consensus 4 ~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~-~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKLGGPDWATPKRILELM-VVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 46999999999999999998 66 7787765 3456 899999888753
No 34
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=61.37 E-value=6 Score=45.35 Aligned_cols=42 Identities=31% Similarity=0.822 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCCCCCC----CcccCC----------------------CccccCCCCCCccccCCCcC
Q 002418 673 CRQYNPCGCQTACGKQ----CPCLLN----------------------GTCCEKYCGCPKSCKNRFRG 714 (925)
Q Consensus 673 ~~~y~PC~c~~~C~~~----C~C~~~----------------------g~~Cek~C~C~~~C~NRf~G 714 (925)
+..-.+|.|...|... |.|... ...|...|+|+.+|.||+..
T Consensus 104 ~~~~~~c~C~~~~~~~~~~~C~C~~~n~~~~~~~~~~~~~~~~~~~~~i~EC~~~C~C~~~C~nRv~q 171 (364)
T KOG1082|consen 104 CENSTGCRCCSSCSSVLPLTCLCERHNGGLVAYTCDGDCGTLGKFKEPVFECSVACGCHPDCANRVVQ 171 (364)
T ss_pred CccccCCCccCCCCCCCCccccChHhhCCccccccCCccccccccCccccccccCCCCCCcCcchhhc
Confidence 3455678887666532 788761 11899999999999999863
No 35
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=61.29 E-value=17 Score=30.50 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=31.9
Q ss_pred cchhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHhh
Q 002418 557 WKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMTC 599 (925)
Q Consensus 557 Wt~~E~~L~~k~~~ifg~NsC~IA~~Ll~g~KtC~EV~~ym~~ 599 (925)
||..|..++..++..||.+-..||..| |.+|=.+|......
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l--~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL--GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS--TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH--CcCCHHHHHHHHHH
Confidence 999999999999999999999999987 66776777655443
No 36
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=60.49 E-value=11 Score=28.90 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHhhhhHHHHHhhHhHhhhhhc
Q 002418 55 QRRVEKNRQKLIGVTNHLYRLSLERR 80 (925)
Q Consensus 55 k~~~e~n~~~l~~~t~~~~~~~~~r~ 80 (925)
|..|.+||+|++..|..|...+..|+
T Consensus 1 Kalf~sNr~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 1 KALFSSNRQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CchhHhhHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999977666554
No 37
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=59.06 E-value=6.1 Score=38.82 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=35.0
Q ss_pred hcccCCccchhhhhhhhhcCC-c----HHHHHHHHh---------hcCCChhHHHHHHHHhh
Q 002418 204 KKDFVDSEDYILRMTIKEVGL-S----DATLESLAQ---------CFSRSPSEVKARYEILS 251 (925)
Q Consensus 204 k~~f~~~ed~~~~~~~~e~g~-s----~~vl~~~~~---------~~~~~~sei~ery~~l~ 251 (925)
++.|++.||++|=+.+-+||+ + |.|.+.|.. |-++|+.||+.|...|-
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 577888999999999999999 2 444444433 22499999999999886
No 38
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains.
Probab=51.20 E-value=7.1 Score=29.01 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.5
Q ss_pred CcccCCCCCCCCCC
Q 002418 897 APAWARKPEASGSK 910 (925)
Q Consensus 897 ~pC~Cgsp~CrG~K 910 (925)
.+|+||+++|+|..
T Consensus 3 ~~C~CGs~~CRG~l 16 (26)
T smart00508 3 QPCLCGAPNCRGFL 16 (26)
T ss_pred eeeeCCCcccccee
Confidence 58999999999884
No 39
>PLN03212 Transcription repressor MYB5; Provisional
Probab=37.46 E-value=31 Score=38.05 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=37.6
Q ss_pred hcccCCccchhhhhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhhh
Q 002418 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILSK 252 (925)
Q Consensus 204 k~~f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~~-~~~sei~ery~~l~~ 252 (925)
|-.|++.||.+|....+++|-. -..||++|+ +|.-+|+.||+.+..
T Consensus 78 kgpWT~EED~lLlel~~~~GnK---Ws~IAk~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGNR---WSLIAGRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred cCCCChHHHHHHHHHHHhcccc---HHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 4569999999999889999953 567777776 899999999987663
No 40
>PLN03212 Transcription repressor MYB5; Provisional
Probab=35.78 E-value=28 Score=38.46 Aligned_cols=46 Identities=24% Similarity=0.206 Sum_probs=37.9
Q ss_pred hcccCCccchhhhhhhhhcCCcHHHHHHHHhhc--CCChhHHHHHHHHhh
Q 002418 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCF--SRSPSEVKARYEILS 251 (925)
Q Consensus 204 k~~f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~--~~~~sei~ery~~l~ 251 (925)
|.-|+..||.+|...+++||... ...|++.+ +++.-+..|||.+.-
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~n--W~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGR--WRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCccc--HHHHHHhhhcCCCcchHHHHHHHhh
Confidence 45699999999999999999653 56678766 599999999997654
No 41
>PF14774 FAM177: FAM177 family
Probab=34.86 E-value=35 Score=33.99 Aligned_cols=66 Identities=30% Similarity=0.393 Sum_probs=37.2
Q ss_pred cccccceecCCCCeeEe-ecCchhhhhhhhhhccc----CCccc---------hhhhhhhhhcCCcHHHHHHHHhhcCCC
Q 002418 174 MSRRRIYYDQNGGEALI-CSDSEEEVIEEEEKKDF----VDSED---------YILRMTIKEVGLSDATLESLAQCFSRS 239 (925)
Q Consensus 174 ~grR~IyyD~~g~Eali-csdseee~~eee~k~~f----~~~ed---------~~~~~~~~e~g~s~~vl~~~~~~~~~~ 239 (925)
.=||-||+ .-||.|- +|.+|||...+..+.+. .+..+ .++|+...-+..-|=|=+.||.|||++
T Consensus 18 ~prRiihF--sdGetmEE~StdeEe~e~d~~~~d~~~~~~dp~~l~w~~~~~~~~~~~~~~~l~~~d~~Ge~lA~~fGit 95 (123)
T PF14774_consen 18 KPRRIIHF--SDGETMEEYSTDEEEEEQDEDQPDKLSVQVDPSKLTWGPWLWFWAWRVGTKSLSGCDYLGEKLASFFGIT 95 (123)
T ss_pred CchheeEe--cCCceeeeeccccccccccccccccccccCCcccCCcHHHHHHHHHHHHHhHhhHHhhhhhHHHHHhCCC
Confidence 34788888 7787774 66666542113333331 22222 123344444444555667899999998
Q ss_pred hh
Q 002418 240 PS 241 (925)
Q Consensus 240 ~s 241 (925)
.+
T Consensus 96 ~~ 97 (123)
T PF14774_consen 96 SP 97 (123)
T ss_pred ch
Confidence 87
No 42
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=34.58 E-value=62 Score=33.45 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=36.8
Q ss_pred cceecCCCCeeEeecCchhhhhh--hhhh---cccCCccchhhhhhhhhcCCc
Q 002418 178 RIYYDQNGGEALICSDSEEEVIE--EEEK---KDFVDSEDYILRMTIKEVGLS 225 (925)
Q Consensus 178 ~IyyD~~g~Ealicsdseee~~e--ee~k---~~f~~~ed~~~~~~~~e~g~s 225 (925)
+||||+.|+|...++-.|...+. .+.. --.+......+++.++.+|+.
T Consensus 22 ~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 22 RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 89999999999999888888777 2221 234556777888888888885
No 43
>KOG3813 consensus Uncharacterized conserved protein (tumor-suppressor AXUD1 in humans) [General function prediction only]
Probab=33.22 E-value=19 Score=43.16 Aligned_cols=22 Identities=27% Similarity=0.872 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCC-CCCcccCCCc
Q 002418 675 QYNPCGCQTACG-KQCPCLLNGT 696 (925)
Q Consensus 675 ~y~PC~c~~~C~-~~C~C~~~g~ 696 (925)
+--+|+|.+-|+ ..|.|.+.|.
T Consensus 306 eeCGCsCr~~CdPETCaCSqaGI 328 (640)
T KOG3813|consen 306 EECGCSCRGVCDPETCACSQAGI 328 (640)
T ss_pred HhhCCcccceeChhhcchhccCc
Confidence 344677777776 4677777766
No 44
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=29.91 E-value=22 Score=39.59 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=24.9
Q ss_pred ccccCCC-CCCCCc-eeeee------ccccccccccccc
Q 002418 144 IKLNDNK-RLPPYT-TWIFL------DRNQRMTEDQSVM 174 (925)
Q Consensus 144 ~~lp~v~-~~P~yt-tW~~l------~rn~rM~edqsv~ 174 (925)
.-||..+ ++|.|+ .|+-. ++.|||.|+...-
T Consensus 130 KllpQ~dsqvP~Ys~~w~~~~~~~~s~~~q~~LE~~~~~ 168 (285)
T PF06937_consen 130 KLLPQFDSQVPRYSAKWIDGSAGGLSNCTQRILEQREAT 168 (285)
T ss_pred ccCcccccCCCccchhhhcccccCCCcchhHHhcccccc
Confidence 5578888 999999 89965 5789999887753
No 45
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=29.33 E-value=30 Score=32.61 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=12.9
Q ss_pred EEEEEccCCCCCCeeee
Q 002418 872 VGIFAKERISAGEELFY 888 (925)
Q Consensus 872 I~~fA~RDI~aGEELTf 888 (925)
.||||.|||++||-|.+
T Consensus 2 rGl~At~dI~~Ge~I~~ 18 (162)
T PF00856_consen 2 RGLFATRDIKAGEVILI 18 (162)
T ss_dssp EEEEESS-B-TTEEEEE
T ss_pred EEEEECccCCCCCEEEE
Confidence 47999999999998873
No 46
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=29.24 E-value=33 Score=28.77 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=11.8
Q ss_pred EEEEccCCCCCCeeee
Q 002418 873 GIFAKERISAGEELFY 888 (925)
Q Consensus 873 ~~fA~RDI~aGEELTf 888 (925)
.++|.|||++|+.|+-
T Consensus 3 vvVA~~di~~G~~i~~ 18 (63)
T PF08666_consen 3 VVVAARDIPAGTVITA 18 (63)
T ss_dssp EEEESSTB-TT-BECT
T ss_pred EEEEeCccCCCCEEcc
Confidence 3789999999999963
No 47
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=27.02 E-value=20 Score=42.81 Aligned_cols=106 Identities=9% Similarity=-0.025 Sum_probs=69.7
Q ss_pred CCCCce---EEeccccCCCcEEEEEecccccHHH--Hhhhhcccc-cCCC-ccccccC---ccEEEeccccCCccccccC
Q 002418 784 DVSGWG---AFLKNSVGKHEYLGEYTGELISHRE--ADKRGKIYD-RENS-SFLFNLN---DQFVLDAYRKGDKLKFANH 853 (925)
Q Consensus 784 ~~kG~G---LFA~edI~kGefI~EY~GElIs~~E--a~~R~k~yd-~~~~-sYlF~L~---~~~vIDA~~~GN~aRFINH 853 (925)
+..+|+ ..|...+..|++|+.++|+..-..- ...+ .+. .... .-+|... .....++...|+..++++|
T Consensus 121 ~~c~~~~~d~~~~~~~~~~~~vw~~vg~~~~~~c~vc~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~l~~ 198 (463)
T KOG1081|consen 121 EKCSKRCTDCRAFKKREVGDLVWSKVGEYPWWPCMVCHDP--LLPKGMKHDHVNFFGCYAWTHEKRVFPYEGQSSKLIPH 198 (463)
T ss_pred cccccCCcceeeeccccceeEEeEEcCcccccccceecCc--ccchhhccccceeccchhhHHHhhhhhccchHHHhhhh
Confidence 335555 7777799999999999999854441 1111 000 0000 0111111 1122344449999999999
Q ss_pred CCCCCceeEEEEEcCeeEEEEEEccCCCCCCe------eeeecC
Q 002418 854 SPDPNCYAKVIMVAGDHRVGIFAKERISAGEE------LFYDYR 891 (925)
Q Consensus 854 SC~PNc~~~~v~V~G~~RI~~fA~RDI~aGEE------LTfDYg 891 (925)
++.|+-....+...+..|+..++.+-++-+.- ++.+|.
T Consensus 199 ~~~~~s~~~~~~~~~~~r~~~~~~q~~~~~~~~e~k~~~~~~~~ 242 (463)
T KOG1081|consen 199 SKKPASTMSEKIKEAKARFGKLKAQWEAGIKQKELKPEEYKRIK 242 (463)
T ss_pred ccccchhhhhhhhcccchhhhcccchhhccchhhcccccccccc
Confidence 99999888888888999999999998888877 665553
No 48
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=26.33 E-value=88 Score=39.36 Aligned_cols=43 Identities=19% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCCcchhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHHHHHHHh
Q 002418 554 EKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWEVFQYMT 598 (925)
Q Consensus 554 ~~~Wt~~E~~L~~k~~~ifg~NsC~IA~~Ll~g~KtC~EV~~ym~ 598 (925)
..-||+.|+-||.+++-.+-+++-+|+..| .+||=+|--+|..
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~KDF~~v~km~--~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSKDFIFVQKMV--KSKTVAQCVEYYY 661 (907)
T ss_pred cccccHHHHHHHHHHHHHhcccHHHHHHHh--ccccHHHHHHHHH
Confidence 456999999999999999999999999877 5677555544433
No 49
>PLN03091 hypothetical protein; Provisional
Probab=23.85 E-value=69 Score=38.19 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=37.1
Q ss_pred hcccCCccchhhhhhhhhcCCcHHHHHHHHhhcC-CChhHHHHHHHHhh
Q 002418 204 KKDFVDSEDYILRMTIKEVGLSDATLESLAQCFS-RSPSEVKARYEILS 251 (925)
Q Consensus 204 k~~f~~~ed~~~~~~~~e~g~s~~vl~~~~~~~~-~~~sei~ery~~l~ 251 (925)
|..|+..||.+|....+++|-. ...|+++|+ ++.-+|+.||..+-
T Consensus 67 KgpWT~EED~lLLeL~k~~GnK---WskIAk~LPGRTDnqIKNRWnslL 112 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGNR---WSQIAAQLPGRTDNEIKNLWNSCL 112 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcc---hHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5579999999999999999953 567777775 99999999998754
No 50
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=23.79 E-value=66 Score=38.51 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=33.3
Q ss_pred CCCCcchhHhHHHHHHHHhhCCccHHHHHhhhCCCccHHH
Q 002418 553 DEKSWKTIEKGLFDKGVEIFGRNSCLIARNLLNGLKTCWE 592 (925)
Q Consensus 553 ~~~~Wt~~E~~L~~k~~~ifg~NsC~IA~~Ll~g~KtC~E 592 (925)
....|+.-|.-|++.|+++||..---||+.+ |+||=-|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HV--gtKt~Eq 315 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHV--GTKTKEQ 315 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHh--CCCCHHH
Confidence 3578999999999999999999999999987 7888433
No 51
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=23.23 E-value=78 Score=25.61 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=28.6
Q ss_pred cchhhhhhhhhcCCcHHHHHHHHhhcCCChhHHHHHHHHhh
Q 002418 211 EDYILRMTIKEVGLSDATLESLAQCFSRSPSEVKARYEILS 251 (925)
Q Consensus 211 ed~~~~~~~~e~g~s~~vl~~~~~~~~~~~sei~ery~~l~ 251 (925)
-|+-|--.+|+. ...=+..|++-+|.+++.+.+|.+.|.
T Consensus 4 ~D~~Il~~Lq~d--~r~s~~~la~~lglS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 4 LDRKILRLLQED--GRRSYAELAEELGLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHHH---TTS-HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCccHHHHHHHHCcCHHHHHHHHHHhC
Confidence 456666667776 445678999999999999999999874
No 52
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=20.81 E-value=82 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.2
Q ss_pred HHHHHHHHhhcCCChhHHHH
Q 002418 226 DATLESLAQCFSRSPSEVKA 245 (925)
Q Consensus 226 ~~vl~~~~~~~~~~~sei~e 245 (925)
|+|+++|+++|++++.||..
T Consensus 3 ~~I~~~Va~~~~i~~~~i~s 22 (60)
T smart00760 3 EEIIEAVAEYFGVKPEDLKS 22 (60)
T ss_pred HHHHHHHHHHhCCCHHHHhc
Confidence 78999999999999999973
No 53
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=20.52 E-value=68 Score=32.29 Aligned_cols=37 Identities=24% Similarity=0.638 Sum_probs=28.5
Q ss_pred cHHHHhhhcccccccccccccccCcCCCCCcccc--CCCCCCCCCCCCC
Q 002418 276 DLEAALDSFDNLFCRRCLVFDCRLHGCSQDLVFP--AEKQPLWYHLDEG 322 (925)
Q Consensus 276 ~l~~aldsfdnlfCRRClvfDC~lHgcsq~lI~~--~ekq~~~~~~~~d 322 (925)
-.+|+..+.|+.||- -|.-+|||+ ...+++|+|.+.+
T Consensus 18 A~~a~~~~~~~~tC~----------~Cg~~L~lh~~~~~~~pWFEH~~~ 56 (128)
T PF11682_consen 18 ARTAASAPYDHWTCH----------SCGCPLILHPGTDTEPPWFEHDQH 56 (128)
T ss_pred hhhhhhCCCCeEEEe----------cCCceEEEecCCcCCCCccccCcc
Confidence 346777899999984 445677888 8889999997653
Done!