BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002419
(925 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JGD|B Chain B, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/866 (42%), Positives = 498/866 (57%), Gaps = 76/866 (8%)
Query: 62 LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQ----- 116
L ++L G + ++E+L + DP+SVD +W++ F+ G QT +
Sbjct: 10 LDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRL 69
Query: 117 ------------------ESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYG 158
+ +++L L+ AY+ GH A LDPLGL +++ DLDP+F+
Sbjct: 70 AKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHD 129
Query: 159 FTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218
TEAD F +G ++ + L +L L+Q YCG IG EYMHI+ E+ W
Sbjct: 130 LTEADFQETFNVGSFA------SGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRW 183
Query: 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEM 278
++ +IE+ +N + ++ L L + E +L K+ AKRF LEGG+ LIP +KEM
Sbjct: 184 IQQRIESGRAT-FNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEM 242
Query: 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVK 338
A + G +V+GM HRGRLNVL NV+ K + +F EF+G + + GTGDVK
Sbjct: 243 IRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKE------HLGTGDVK 296
Query: 339 YHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIH 398
YH+G S D T GG +HL+L NPSHLE V PVVIG RA+ ++ K + + IH
Sbjct: 297 YHMGFSSDFQTDGG-LVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIH 355
Query: 399 GDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-DPMSGRSSQYCTDVAKAL 457
GD + GQGVV ETL++S Y +GGT+ IV+NNQV FTT +P+ RS+ YCTD+ K +
Sbjct: 356 GDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV 415
Query: 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYK 517
APIFHVN DD EAVA V LA ++R TF DV +DLVCYRR GHNE DEPS TQP MY+
Sbjct: 416 QAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQ 475
Query: 518 IIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYW 577
I+ HP+ +IY +KL + + T ED ++ L ++ P + S W
Sbjct: 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRP--MNMHSFTW 533
Query: 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGID 637
S + + E N V+ + L+ + K I+T+PE + V K+Y R M + D
Sbjct: 534 SPYLNHEWDEEYPNK-VEMKRLQELAKRISTVPEAVEMQSRVAKIYADRQAMAAGEKLFD 592
Query: 638 WALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAE 697
W E LA+ATL+ EG VRLSG+D RGTF HRH+V+H+Q G Y PL H+ Q A
Sbjct: 593 WGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGA- 651
Query: 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR 757
F V +S LSE VL FE GY+ P +L +WEAQFGDFANGAQV+ DQF++SGE KW R
Sbjct: 652 -FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710
Query: 758 QSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVT 817
GLV++LPHGY+GQGPEHSSARLER+LQ+ E N Q+ +
Sbjct: 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQL------------------CAEQNMQVCVPS 752
Query: 818 TPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR 877
TPA +H+LRRQ R R+PLVVMSPK+LLRH S+L E + P
Sbjct: 753 TPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAI--------- 803
Query: 878 LIKDQNEHSDLE-EGIRRLILCSGKV 902
E +L+ +G++R+++CSGKV
Sbjct: 804 -----GEIDELDPKGVKRVVMCSGKV 824
>pdb|2JGD|A Chain A, E. Coli 2-Oxoglutarate Dehydrogenase (E1o)
Length = 933
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/866 (42%), Positives = 498/866 (57%), Gaps = 76/866 (8%)
Query: 62 LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQAATSPGISGQTIQ----- 116
L ++L G + ++E+L + DP+SVD +W++ F+ G QT +
Sbjct: 10 LDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRL 69
Query: 117 ------------------ESMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYG 158
+ +++L L+ AY+ GH A LDPLGL +++ DLDP+F+
Sbjct: 70 AKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHD 129
Query: 159 FTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218
TEAD F +G ++ + L +L L+Q YCG IG EYMHI+ E+ W
Sbjct: 130 LTEADFQETFNVGSFA------SGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRW 183
Query: 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEM 278
++ +IE+ +N + ++ L L + E +L K+ AKRF LEGG+ LIP +KEM
Sbjct: 184 IQQRIESGRAT-FNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEM 242
Query: 279 FDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVK 338
A + G +V+GM HRGRLNVL NV+ K + +F EF+G + + GTGDVK
Sbjct: 243 IRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKE------HLGTGDVK 296
Query: 339 YHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIH 398
YH+G S D T GG +HL+L NPSHLE V PVVIG RA+ ++ K + + IH
Sbjct: 297 YHMGFSSDFQTDGG-LVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIH 355
Query: 399 GDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-DPMSGRSSQYCTDVAKAL 457
GD + GQGVV ETL++S Y +GGT+ IV+NNQV FTT +P+ RS+ YCTD+ K +
Sbjct: 356 GDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMV 415
Query: 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYK 517
APIFHVN DD EAVA V LA ++R TF DV +DLVCYRR GHNE DEPS TQP MY+
Sbjct: 416 QAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQ 475
Query: 518 IIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYW 577
I+ HP+ +IY +KL + + T ED ++ L ++ P + S W
Sbjct: 476 KIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRP--MNMHSFTW 533
Query: 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGID 637
S + + E N V+ + L+ + K I+T+PE + V K+Y R M + D
Sbjct: 534 SPYLNHEWDEEYPNK-VEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFD 592
Query: 638 WALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAE 697
W E LA+ATL+ EG VRLSG+D RGTF HRH+V+H+Q G Y PL H+ Q A
Sbjct: 593 WGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGA- 651
Query: 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR 757
F V +S LSE VL FE GY+ P +L +WEAQFGDFANGAQV+ DQF++SGE KW R
Sbjct: 652 -FRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR 710
Query: 758 QSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVT 817
GLV++LPHGY+GQGPEHSSARLER+LQ+ E N Q+ +
Sbjct: 711 MCGLVMLLPHGYEGQGPEHSSARLERYLQL------------------CAEQNMQVCVPS 752
Query: 818 TPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR 877
TPA +H+LRRQ R R+PLVVMSPK+LLRH S+L E + P
Sbjct: 753 TPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAI--------- 803
Query: 878 LIKDQNEHSDLE-EGIRRLILCSGKV 902
E +L+ +G++R+++CSGKV
Sbjct: 804 -----GEIDELDPKGVKRVVMCSGKV 824
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust.
Identities = 354/819 (43%), Positives = 484/819 (59%), Gaps = 87/819 (10%)
Query: 112 GQTIQE-SMRLLLLVRAYQVNGHMKAKLDPLGLEE---REIPDDLDPAFYGFTEADLDRE 167
G +I++ + R++ L+ AY+ GH+ A +DPL L+ R PD LD +G T DLDRE
Sbjct: 1 GDSIEDKNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPD-LDVNSHGLTLWDLDRE 59
Query: 168 FFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIET-- 225
F + GF R + LR IL+ L AYC +G EY HI + E+ W+++++ET
Sbjct: 60 F-----KVDGFAGVQR--KKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH 112
Query: 226 --PTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAA 283
PT + ++ IL +L + FE FL TK+ KRF LEG ET+IP M + D+ A
Sbjct: 113 DKPTVAE-----QKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCA 167
Query: 284 DLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLG- 342
+ G++ +VI MPHRGRLNVL N+V KP QIFSEF G P G+GDVKYHLG
Sbjct: 168 EHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQA----HGSGDVKYHLGA 223
Query: 343 TSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYY-----SNDMDRTKNMAVLI 397
T G I +SL ANPSHLEAVDPV+ G RAKQ +R + +++
Sbjct: 224 TGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLML 283
Query: 398 HGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKAL 457
HGD +FAGQGVV ETL+L+ L Y GGTIHIVVNNQ+ FTT P RSS+YCTDVAK +
Sbjct: 284 HGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMI 343
Query: 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYK 517
APIFHVNGDD EA A V LA ++RQ F DVV+D++CYRR GHNE D+PS TQP MY
Sbjct: 344 GAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYD 403
Query: 518 IIRSHPSSLEIYQNKLLECQHVTQED----INKIQEKVNRILSEEFVASKDYVPNRRDWL 573
+I + S + Y L+ ++ ++ + Q ++ R+ +E K +
Sbjct: 404 VIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPS---- 459
Query: 574 SAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETG 633
++ +Q+ T V +L+ +G A LPE F H V+ V E R +M G
Sbjct: 460 ----ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEG 515
Query: 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMN 693
IDWA E LA +L+ EG VRLSGQD +RGTF+ RH+V+ D++TGE++ PL + N
Sbjct: 516 R-IDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATN 574
Query: 694 QDAE----MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVN 749
D F V NS+LSEF +GFE GYS+ NP+++V+WEAQFGDF NGAQ I D+F++
Sbjct: 575 PDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFIS 634
Query: 750 SGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQEC 809
SGE+KW + S +V++LPHG++GQGP+H+S R+ERFLQ+ E
Sbjct: 635 SGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQL------------------WAEG 676
Query: 810 NWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNL-----SEFDDVQG 864
+ I +TPANYFH+LRR ++PL+V +PK++LR+K S++ S+F V
Sbjct: 677 SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLE 736
Query: 865 HPGF-DKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKV 902
P + D +G R K + RL+L SGK+
Sbjct: 737 EPMYTDGEGDRNK---------------VTRLLLTSGKI 760
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 613 bits (1580), Expect = e-175, Method: Compositional matrix adjust.
Identities = 352/813 (43%), Positives = 480/813 (59%), Gaps = 86/813 (10%)
Query: 117 ESMRLLLLVRAYQVNGHMKAKLDPLGLEE---REIPDDLDPAFYGFTEADLDREFFLGVW 173
++ R++ L+ AY+ GH+ A +DPL L+ R PD LD +G T DLDREF
Sbjct: 252 KNARVIELIAAYRNRGHLMADIDPLRLDNTRFRSHPD-LDVNSHGLTLWDLDREF----- 305
Query: 174 SMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIET----PTPM 229
+ GF R + LR IL+ L AYC +G EY HI + E+ W+++++ET PT
Sbjct: 306 KVDGFAGVQR--KKLRDILSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKHDKPTVA 363
Query: 230 QYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVES 289
+ ++ IL +L + FE FL TK+ KRF LEG ET+IP M + D+ A+ G++
Sbjct: 364 E-----QKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDE 418
Query: 290 IVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLG-TSYDRP 348
+VI MPHRGRLNVL N+V KP QIFSEF G P G+GDVKYHLG T
Sbjct: 419 VVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQA----HGSGDVKYHLGATGTYIQ 474
Query: 349 TRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYY-----SNDMDRTKNMAVLIHGDGSF 403
G I +SL ANPSHLEAVDPV+ G RAKQ +R + +++HGD +F
Sbjct: 475 MFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAF 534
Query: 404 AGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFH 463
AGQGVV ETL+L+ L Y GGTIHIVVNNQ+ FTT P RSS+YCTDVAK + APIFH
Sbjct: 535 AGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 594
Query: 464 VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHP 523
VNGDD EA A V LA ++RQ F DVV+D++CYRR GHNE D+PS TQP MY +I +
Sbjct: 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKR 654
Query: 524 SSLEIYQNKLLECQHVTQED----INKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSG 579
S + Y L+ ++ ++ + Q ++ R+ +E K +
Sbjct: 655 GSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPS--------ES 706
Query: 580 FKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWA 639
++ +Q+ T V +L+ +G A LPE F H V+ V E R +M G IDWA
Sbjct: 707 VEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYEGR-IDWA 765
Query: 640 LGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAE-- 697
E LA +L+ EG VRLSGQD +RGTF+ RH+V+ D++TGE++ PL + N D
Sbjct: 766 FAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPT 825
Query: 698 --MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW 755
F V NS+LSEF +GFE GYS+ NP+++V+WEAQFGDF NGAQ I D+F++SGE+KW
Sbjct: 826 GGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKW 885
Query: 756 LRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVN 815
+ S +V++LPHG++GQGP+H+S R+ERFLQ+ E + I
Sbjct: 886 GQLSDVVLLLPHGHEGQGPDHTSGRIERFLQL------------------WAEGSMTIAM 927
Query: 816 VTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNL-----SEFDDVQGHPGF-D 869
+TPANYFH+LRR ++PL+V +PK++LR+K S++ S+F V P + D
Sbjct: 928 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTD 987
Query: 870 KQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKV 902
+G R K + RL+L SGK+
Sbjct: 988 GEGDRNK---------------VTRLLLTSGKI 1005
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
P+ G A +Y D + + ++GDG+ A QG ++E +++AL I I
Sbjct: 147 PLGAGIALACKYNGKD-----EVCLTLYGDGA-ANQGQIFEAYNMAALWKLP---CIFIC 197
Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDMEAVAHVCELAAEWRQTFHSD 489
NN+ T +S TD K D P V+G D+ V AA + ++
Sbjct: 198 ENNRYGMGTSVERAAAS---TDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP 254
Query: 490 VVVDLVCYRRFGHNEIDEP--SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKI 547
++++L YR GH E+ +P S+ + + +RS + + +++++ + E++ +I
Sbjct: 255 ILMELQTYRYHGH-EMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 313
Query: 548 QEKVNR 553
+V +
Sbjct: 314 DVEVRK 319
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 15/166 (9%)
Query: 351 GGKRIHLSLVANP--SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV 408
G K ++ VA+P SH+ I S + RT +AV GDG+ +G
Sbjct: 133 GSKALNFFTVASPIASHVPPAAGAAI---------SMKLLRTGQVAVCTFGDGA-TSEGD 182
Query: 409 VYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDD 468
Y ++ +A+ + I NN A + D S D A A P + V+G D
Sbjct: 183 WYAGINFAAVQG---APAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMD 239
Query: 469 MEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPK 514
+ A +V + A E + +V+L YR H+ D+ S +PK
Sbjct: 240 VLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPK 285
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
P+ G A +Y D + + ++GDG+ A QG ++E +++AL I I
Sbjct: 164 PLGAGIALACKYNGKD-----EVCLTLYGDGA-ANQGQIFEAYNMAALWKLP---CIFIC 214
Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDMEAVAHVCELAAEWRQTFHSD 489
NN+ T +S TD K D P V+G D+ V AA + ++
Sbjct: 215 ENNRYGMGTSVERAAAS---TDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP 271
Query: 490 VVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQ 548
++++L YR GH+ D S+ + + +RS + + +++++ + E++ +I
Sbjct: 272 ILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEID 331
Query: 549 EKVNR 553
+V +
Sbjct: 332 VEVRK 336
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
P+ G A +Y D + + ++GDG+ A QG ++E +++AL I I
Sbjct: 164 PLGAGIALACKYNGKD-----EVCLTLYGDGA-ANQGQIFEAYNMAALWKLP---CIFIC 214
Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDMEAVAHVCELAAEWRQTFHSD 489
NN+ T +S TD K D P V+G D+ V AA + ++
Sbjct: 215 ENNRYGMGTSVERAAAS---TDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP 271
Query: 490 VVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQ 548
++++L YR GH+ D S+ + + +RS + + +++++ + E++ +I
Sbjct: 272 ILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEID 331
Query: 549 EKVNR 553
+V +
Sbjct: 332 VEVRK 336
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 84/186 (45%), Gaps = 16/186 (8%)
Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
P+ G A +Y D + + ++GDG+ A QG ++E +++AL I I
Sbjct: 164 PLGAGIALACKYNGKD-----EVCLTLYGDGA-ANQGQIFEAYNMAALWKLP---CIFIC 214
Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDMEAVAHVCELAAEWRQTFHSD 489
NN+ T +S TD K D P V+G D+ V AA + ++
Sbjct: 215 ENNRYGMGTAVERAAAS---TDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP 271
Query: 490 VVVDLVCYRRFGHNEIDEPSFTQPKMYKI--IRSHPSSLEIYQNKLLECQHVTQEDINKI 547
++++L YR GH+ + +P +I +RS + + +++++ + E++ +I
Sbjct: 272 ILMELQTYRYHGHS-MSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
Query: 548 QEKVNR 553
+V +
Sbjct: 331 DVEVRK 336
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 16/186 (8%)
Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
P+ G A +Y D + + ++GDG+ A QG ++E +++AL I I
Sbjct: 164 PLGAGIALACKYNGKD-----EVCLTLYGDGA-ANQGQIFEAYNMAALWKLP---CIFIC 214
Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDMEAVAHVCELAAEWRQTFHSD 489
NN+ T +S TD K D P V+G D+ V AA + ++
Sbjct: 215 ENNRYGMGTAVERAAAS---TDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP 271
Query: 490 VVVDLVCYRRFGHNEIDEPSFTQPKMYKI--IRSHPSSLEIYQNKLLECQHVTQEDINKI 547
++++L YR GH + +P +I +RS + + +++++ + E++ +I
Sbjct: 272 ILMELQTYRYHGHX-MSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
Query: 548 QEKVNR 553
+V +
Sbjct: 331 DVEVRK 336
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 14/185 (7%)
Query: 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIV 430
P+ G A +Y D + + ++GDG+ A QG ++E + +AL I I
Sbjct: 147 PLGAGIALACKYNGKD-----EVCLTLYGDGA-ANQGQIFEAYNXAALWKLP---CIFIC 197
Query: 431 VNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDMEAVAHVCELAAEWRQTFHSD 489
NN+ T +S TD K D P V+G D+ V AA + ++
Sbjct: 198 ENNRYGXGTSVERAAAS---TDYYKRGDFIPGLRVDGXDILCVREATRFAAAYCRSGKGP 254
Query: 490 VVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQ 548
++ +L YR GH+ D S+ + + +RS + + +++ + + E++ +I
Sbjct: 255 ILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXVNSNLASVEELKEID 314
Query: 549 EKVNR 553
+V +
Sbjct: 315 VEVRK 319
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Query: 393 MAVLIHGDGSFA----GQGVVYETLHLSALPNYSI--GGTIHIVVNNQVAFTT-DPMSGR 445
MA I GD A G G E+ +AL + I VVNNQ A +T ++G
Sbjct: 196 MASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGG 255
Query: 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI 505
S V+G+D AV AAE + +++ V YR H+
Sbjct: 256 ESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTS 315
Query: 506 DEPSFTQP 513
D+PS +P
Sbjct: 316 DDPSKYRP 323
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 387 MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS 446
M K +A+ GDG QG YE ++ + I +V NN+ A +T
Sbjct: 160 MRGKKAVAITYTGDGG-TSQGDFYEGINFAGAFK---APAIFVVQNNRFAISTPVEKQTV 215
Query: 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN-EI 505
++ A A P V+G D AV + A E +++ +C+R H
Sbjct: 216 AKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275
Query: 506 DEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV-TQEDINKIQEKVNRILSEEFVASKD 564
D+P+ + K + + L ++ K LE + + ++E+ N + E+ + E + D
Sbjct: 276 DDPTRYRSKELENEWAKKDPLVRFR-KFLEAKGLWSEEEENNVIEQAKEEIKEA-IKKAD 333
Query: 565 YVPNRR 570
P ++
Sbjct: 334 ETPKQK 339
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 387 MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS 446
M K +A+ GDG QG YE ++ + I +V NN+ A +T
Sbjct: 161 MRGKKAVAITYTGDGG-TSQGDFYEGINFAGAFK---APAIFVVQNNRFAISTPVEKQTV 216
Query: 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN-EI 505
++ A A P V+G D AV + A E +++ +C+R H
Sbjct: 217 AKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 276
Query: 506 DEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV-TQEDINKIQEKVNRILSEEFVASKD 564
D+P+ + K + + L ++ K LE + + ++E+ N + E+ + E + D
Sbjct: 277 DDPTRYRSKELENEWAKKDPLVRFR-KFLEAKGLWSEEEENNVIEQAKEEIKEA-IKKAD 334
Query: 565 YVPNRR 570
P ++
Sbjct: 335 ETPKQK 340
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 387 MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS 446
M K +A+ GDG QG YE ++ + I +V NN+ A +T
Sbjct: 161 MRGKKAVAITYTGDGG-TSQGDFYEGINFAGAFK---APAIFVVQNNRFAASTPVEKQTV 216
Query: 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN-EI 505
++ A A P V+G D AV + A E +++ +C+R H
Sbjct: 217 AKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 276
Query: 506 DEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV-TQEDINKIQEKVNRILSEEFVASKD 564
D+P+ + K + + L ++ K LE + + ++E+ N + E+ + E + D
Sbjct: 277 DDPTRYRSKELENEWAKKDPLVRFR-KFLEAKGLWSEEEENNVIEQAKEEIKEA-IKKAD 334
Query: 565 YVPNRR 570
P ++
Sbjct: 335 ETPKQK 340
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 387 MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS 446
M K +A+ GDG QG Y+ ++ + I +V NN+ A +T
Sbjct: 160 MRGKKAVAITYTGDGG-TSQGNFYQGINFAGAFK---APAIFVVQNNRFAISTPVEKQTV 215
Query: 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN-EI 505
++ A A P V+G D AV + A E +++ +C+R H
Sbjct: 216 AKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSG 275
Query: 506 DEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV-TQEDINKIQEKVNRILSEEFVASKD 564
D+P+ + K + + L ++ K LE + + ++E+ N + E+ + E + D
Sbjct: 276 DDPTRYRSKELENEWAKKDPLVRFR-KFLEAKGLWSEEEENNVIEQAKEEIKEA-IKKAD 333
Query: 565 YVPNRR 570
P ++
Sbjct: 334 ETPKQK 339
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 7/127 (5%)
Query: 394 AVLIHGDGSFA----GQGVVYETLHLSALPNYSI--GGTIHIVVNNQVAFTT-DPMSGRS 446
A I GD A G G E+ +AL + I VVNNQ A +T ++G
Sbjct: 196 ASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGE 255
Query: 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEID 506
S V+G+D AV AAE + +++ V YR H+ D
Sbjct: 256 STTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSD 315
Query: 507 EPSFTQP 513
+PS +P
Sbjct: 316 DPSKYRP 322
>pdb|1XI8|A Chain A, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
pdb|1XI8|B Chain B, Molybdenum Cofactor Biosynthesis Protein From Pyrococcus
Furiosus Pfu-1657500-001
Length = 403
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 516 YKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSA 575
+K + + +L I N L E + V + +++ + R+L+E+ VAS D P R +
Sbjct: 11 FKRLTPYEEALSIVLNDLKEIEEV---EYVPLKDALGRVLAEDIVASYDLPPFDRAAVDG 67
Query: 576 YWSGFK--------SPEQLSRIRNTGVKPEILKNV--GKAITTLPENFKPHRGVKKVYEL 625
Y + SP +L I + K V GKAI L P RG V +
Sbjct: 68 YAVRAEDTFEAREYSPVELEVIEEVPIGENPNKEVIAGKAIKVLTGGKIP-RGANAV--I 124
Query: 626 RAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFS-HRHSVLHDQE 679
+M++ G + + G ++ +G+DV++G + + ++L Q+
Sbjct: 125 MQEMVKRE-------GSKIYVLRPVAPGQNISFAGEDVKKGDIALKKGTILRPQD 172
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 179 LSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREV 238
S++ + + S L R S G + SD + D+I P +Y Q +
Sbjct: 1301 FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVL 1360
Query: 239 ILDRLVWSTQFENFLATKWTTAKRFGLEGG--ETLIPG---MKEMFDRAADLGVESIVIG 293
L +L+ F KW T +R + G PG M E F R A + + +G
Sbjct: 1361 FLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI----LYLG 1416
Query: 294 MPHRGRLNVLGNVVRKPLRQIFSEFSGGTRP 324
P L+ + + K + ++ EF T P
Sbjct: 1417 YPSGKSLSQIYEIYYKAIFKLVPEFRSYTEP 1447
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 9/151 (5%)
Query: 179 LSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREV 238
S++ + + S L R S G + SD + D+I P +Y Q +
Sbjct: 1082 FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVL 1141
Query: 239 ILDRLVWSTQFENFLATKWTTAKRFGLEGGET--LIPG---MKEMFDRAADLGVESIVIG 293
L +L+ F KW T +R + G PG M E F R A + + +G
Sbjct: 1142 FLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI----LYLG 1197
Query: 294 MPHRGRLNVLGNVVRKPLRQIFSEFSGGTRP 324
P L+ + + K + ++ EF T P
Sbjct: 1198 YPSGKSLSQIYEIYYKAIFKLVPEFRSYTEP 1228
>pdb|1AGR|E Chain E, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|H Chain H, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
Length = 205
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 524 SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEE--------FVASKDYVPNRRDWLSA 575
SS ++K++ CQ V+QE++ K E + +++ E F+ S+ N W+S
Sbjct: 36 SSSHSKKDKVVTCQRVSQEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISC 95
Query: 576 -YWSGFKSPEQLS 587
+ KSP +LS
Sbjct: 96 EEYKKIKSPSKLS 108
>pdb|3F1S|A Chain A, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 385
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 530 QNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRI 589
Q K L ++ +E KI + + I E + DY+ + WL+ + F +
Sbjct: 141 QAKRLMNHYINKETRGKIPKLFDEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLD 200
Query: 590 RNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMI 630
+ +K ++ GK +T +NF+ H +K Y+ A M+
Sbjct: 201 KYKTIKVPMMYGAGKFASTFDKNFRCHV-LKLPYQGNATML 240
>pdb|3H5C|A Chain A, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 423
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 530 QNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRI 589
Q K L ++ +E KI + + I E + DY+ + WL+ + F +
Sbjct: 179 QAKRLMNHYINKETRGKIPKLFDEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLD 238
Query: 590 RNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMI 630
+ +K ++ GK +T +NF+ H +K Y+ A M+
Sbjct: 239 KYKTIKVPMMYGAGKFASTFDKNFRCHV-LKLPYQGNATML 278
>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
Space Group
pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
Space Group
Length = 387
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 530 QNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRI 589
Q K L ++ +E KI + + I E + DY+ + WL+ + F +
Sbjct: 179 QAKRLMNHYINKETRGKIPKLFDEINPETKLILVDYILFKGKWLTPFDPVFTEVDTFHLD 238
Query: 590 RNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMI 630
+ +K ++ GK +T +NF+ H +K Y+ A M+
Sbjct: 239 KYKTIKVPMMYGAGKFASTFDKNFRCHV-LKLPYQGNATML 278
>pdb|1MBM|A Chain A, Nsp4 Proteinase From Equine Arteritis Virus
pdb|1MBM|B Chain B, Nsp4 Proteinase From Equine Arteritis Virus
pdb|1MBM|C Chain C, Nsp4 Proteinase From Equine Arteritis Virus
pdb|1MBM|D Chain D, Nsp4 Proteinase From Equine Arteritis Virus
Length = 198
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 425 GTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQ 484
G++ N V T + GR++ + A+ F NGD EAV EL W Q
Sbjct: 17 GSVWTRNNEVVVLTASHVVGRANMATLKIGDAMLTLTFKKNGDFAEAVTTQSELPGNWPQ 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,173,940
Number of Sequences: 62578
Number of extensions: 1279390
Number of successful extensions: 2906
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2857
Number of HSP's gapped (non-prelim): 26
length of query: 925
length of database: 14,973,337
effective HSP length: 108
effective length of query: 817
effective length of database: 8,214,913
effective search space: 6711583921
effective search space used: 6711583921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)