Query 002419
Match_columns 925
No_of_seqs 462 out of 3073
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 23:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0450 2-oxoglutarate dehydro 100.0 9E-247 2E-251 2046.7 65.7 845 51-917 35-919 (1017)
2 PRK12270 kgd alpha-ketoglutara 100.0 4E-214 8E-219 1849.9 73.4 791 67-912 332-1130(1228)
3 COG0567 SucA 2-oxoglutarate de 100.0 4E-212 1E-216 1844.3 58.1 797 62-911 5-807 (906)
4 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 5E-207 1E-211 1844.7 79.3 805 66-913 1-834 (929)
5 PRK09404 sucA 2-oxoglutarate d 100.0 4E-206 9E-211 1844.7 79.5 803 63-913 10-828 (924)
6 KOG0451 Predicted 2-oxoglutara 100.0 2E-189 4E-194 1552.8 42.3 756 117-913 52-818 (913)
7 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.6E-76 5.6E-81 631.2 23.2 265 249-516 1-265 (265)
8 COG1071 AcoA Pyruvate/2-oxoglu 100.0 3.6E-66 7.9E-71 569.5 30.4 315 229-580 22-345 (358)
9 PLN02269 Pyruvate dehydrogenas 100.0 2.5E-62 5.4E-67 546.9 32.7 310 229-579 25-343 (362)
10 PF00676 E1_dh: Dehydrogenase 100.0 9.5E-63 2E-67 539.8 24.0 290 241-569 1-299 (300)
11 PLN02374 pyruvate dehydrogenas 100.0 3.8E-61 8.3E-66 547.0 32.9 318 229-580 81-408 (433)
12 TIGR03182 PDH_E1_alph_y pyruva 100.0 7.1E-61 1.5E-65 528.3 30.6 306 233-577 1-314 (315)
13 KOG0225 Pyruvate dehydrogenase 100.0 5.1E-60 1.1E-64 503.8 25.6 309 229-579 54-371 (394)
14 CHL00149 odpA pyruvate dehydro 100.0 8E-59 1.7E-63 516.4 32.4 316 229-578 15-340 (341)
15 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 4E-56 8.6E-61 486.2 29.3 285 239-562 1-293 (293)
16 TIGR03181 PDH_E1_alph_x pyruva 100.0 7.2E-54 1.6E-58 477.3 31.8 303 229-580 19-330 (341)
17 KOG1182 Branched chain alpha-k 100.0 6.4E-49 1.4E-53 414.9 19.4 316 228-581 80-404 (432)
18 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.2E-39 6.9E-44 382.1 36.7 466 221-916 4-485 (581)
19 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.1E-39 2.3E-44 348.2 17.9 217 636-914 2-223 (324)
20 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 4.1E-33 8.9E-38 332.0 28.7 365 361-916 108-520 (617)
21 PRK05899 transketolase; Review 100.0 4.9E-32 1.1E-36 324.0 36.2 399 361-917 115-536 (624)
22 PRK05444 1-deoxy-D-xylulose-5- 100.0 9.3E-32 2E-36 319.1 26.3 363 361-914 114-486 (580)
23 PLN02234 1-deoxy-D-xylulose-5- 100.0 4.3E-29 9.4E-34 295.7 29.4 372 360-917 173-570 (641)
24 KOG0525 Branched chain alpha-k 100.0 1.2E-31 2.6E-36 276.1 6.7 184 634-860 39-227 (362)
25 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.4E-28 3E-33 293.5 30.5 369 361-916 141-568 (677)
26 PRK12571 1-deoxy-D-xylulose-5- 100.0 9.5E-28 2.1E-32 287.1 37.4 361 364-916 119-529 (641)
27 TIGR00232 tktlase_bact transke 100.0 3E-27 6.6E-32 283.5 37.8 429 359-914 105-563 (653)
28 KOG0524 Pyruvate dehydrogenase 100.0 1E-28 2.2E-33 258.1 16.6 225 634-917 33-262 (359)
29 PRK12753 transketolase; Review 99.9 2.7E-24 5.9E-29 258.2 38.4 435 361-917 111-575 (663)
30 PRK12754 transketolase; Review 99.9 5.2E-24 1.1E-28 254.8 36.5 436 360-917 110-575 (663)
31 PTZ00089 transketolase; Provis 99.9 8.7E-24 1.9E-28 254.1 35.5 432 360-917 112-573 (661)
32 PLN02790 transketolase 99.9 1.2E-23 2.7E-28 252.5 36.5 435 359-916 100-565 (654)
33 PF02779 Transket_pyr: Transke 99.9 3.4E-25 7.4E-30 226.0 12.0 177 634-850 1-178 (178)
34 PLN02225 1-deoxy-D-xylulose-5- 99.9 1.1E-23 2.3E-28 250.5 25.8 348 363-917 188-593 (701)
35 PTZ00182 3-methyl-2-oxobutanat 99.9 4.6E-23 1E-27 231.3 19.8 219 635-915 34-257 (355)
36 PRK11892 pyruvate dehydrogenas 99.9 8.4E-23 1.8E-27 235.7 18.2 220 636-917 142-366 (464)
37 CHL00144 odpB pyruvate dehydro 99.9 4.2E-22 9.1E-27 221.5 19.3 219 636-917 4-227 (327)
38 cd07036 TPP_PYR_E1-PDHc-beta_l 99.9 1.3E-22 2.8E-27 205.6 13.8 161 641-844 2-167 (167)
39 PRK09212 pyruvate dehydrogenas 99.9 4.6E-22 1E-26 221.3 19.6 219 636-917 4-227 (327)
40 PLN02683 pyruvate dehydrogenas 99.9 5.6E-21 1.2E-25 214.6 19.5 224 634-916 25-253 (356)
41 PRK05261 putative phosphoketol 99.8 1.3E-16 2.7E-21 192.2 35.4 515 265-915 48-638 (785)
42 TIGR03186 AKGDH_not_PDH alpha- 99.8 1.2E-16 2.6E-21 194.4 34.8 437 362-915 187-748 (889)
43 PRK09405 aceE pyruvate dehydro 99.8 1.7E-14 3.6E-19 176.0 47.4 445 364-917 195-754 (891)
44 PRK13012 2-oxoacid dehydrogena 99.8 9.7E-15 2.1E-19 178.6 45.3 441 363-915 202-756 (896)
45 KOG0523 Transketolase [Carbohy 99.7 2.7E-15 5.9E-20 172.5 27.4 403 364-916 118-530 (632)
46 cd02007 TPP_DXS Thiamine pyrop 99.7 4.6E-17 9.9E-22 169.0 11.9 119 361-501 72-194 (195)
47 cd07033 TPP_PYR_DXS_TK_like Py 99.7 8.3E-17 1.8E-21 161.2 13.1 151 642-844 3-156 (156)
48 smart00861 Transket_pyr Transk 99.7 3.3E-16 7E-21 158.1 14.9 162 638-844 2-167 (168)
49 COG0021 TktA Transketolase [Ca 99.7 3.6E-14 7.9E-19 165.1 32.9 426 363-915 115-572 (663)
50 COG1154 Dxs Deoxyxylulose-5-ph 99.7 9.4E-15 2E-19 169.1 26.5 364 363-917 114-527 (627)
51 cd02012 TPP_TK Thiamine pyroph 99.7 3.3E-16 7.1E-21 168.7 12.1 131 361-505 102-235 (255)
52 cd02011 TPP_PK Thiamine pyroph 99.6 8.8E-15 1.9E-19 154.5 11.9 170 266-485 2-175 (227)
53 PF00456 Transketolase_N: Tran 99.5 3.7E-14 8E-19 158.2 11.8 132 362-503 109-249 (332)
54 PRK11864 2-ketoisovalerate fer 99.5 4.2E-13 9E-18 147.4 17.1 229 295-562 14-296 (300)
55 COG3959 Transketolase, N-termi 99.5 4.7E-13 1E-17 139.0 13.1 124 360-498 115-242 (243)
56 TIGR00759 aceE pyruvate dehydr 99.4 1.2E-09 2.5E-14 132.9 41.5 133 362-503 187-394 (885)
57 cd02017 TPP_E1_EcPDC_like Thia 99.4 1.6E-12 3.6E-17 146.2 13.8 133 362-503 116-323 (386)
58 cd00568 TPP_enzymes Thiamine p 99.2 1.4E-11 3E-16 123.1 8.0 110 363-496 45-168 (168)
59 cd02004 TPP_BZL_OCoD_HPCL Thia 99.2 5.7E-11 1.2E-15 120.5 10.3 112 364-496 48-171 (172)
60 cd02002 TPP_BFDC Thiamine pyro 99.2 5.3E-11 1.1E-15 121.0 9.8 110 364-496 49-178 (178)
61 cd03372 TPP_ComE Thiamine pyro 99.2 2E-10 4.2E-15 118.0 12.2 113 363-498 41-156 (179)
62 cd02013 TPP_Xsc_like Thiamine 99.2 5.5E-11 1.2E-15 123.6 7.5 116 364-499 53-181 (196)
63 cd02014 TPP_POX Thiamine pyrop 99.1 2.9E-10 6.2E-15 116.3 9.4 112 364-498 51-174 (178)
64 cd02006 TPP_Gcl Thiamine pyrop 99.0 3.8E-10 8.1E-15 117.7 7.7 116 364-496 57-193 (202)
65 cd02001 TPP_ComE_PpyrDC Thiami 99.0 1.7E-09 3.6E-14 108.9 10.6 111 364-496 42-154 (157)
66 cd02015 TPP_AHAS Thiamine pyro 99.0 1.7E-09 3.6E-14 111.4 10.6 112 364-498 50-175 (186)
67 cd02008 TPP_IOR_alpha Thiamine 99.0 1.7E-09 3.6E-14 110.7 10.5 114 363-496 50-176 (178)
68 PF02775 TPP_enzyme_C: Thiamin 99.0 4.9E-10 1.1E-14 111.5 6.0 111 363-494 27-153 (153)
69 cd03371 TPP_PpyrDC Thiamine py 99.0 3.1E-09 6.7E-14 110.1 11.1 116 364-499 48-165 (188)
70 cd02005 TPP_PDC_IPDC Thiamine 99.0 2.4E-09 5.3E-14 110.2 9.9 114 364-498 50-175 (183)
71 PRK07524 hypothetical protein; 98.9 1.9E-09 4.2E-14 127.8 9.8 115 364-501 407-533 (535)
72 cd02010 TPP_ALS Thiamine pyrop 98.9 3.1E-09 6.7E-14 108.9 9.1 112 364-498 48-171 (177)
73 cd02003 TPP_IolD Thiamine pyro 98.9 2.7E-09 5.9E-14 111.7 7.6 112 364-498 48-185 (205)
74 PRK06163 hypothetical protein; 98.9 1.2E-08 2.6E-13 107.0 12.3 113 364-497 57-173 (202)
75 PRK08327 acetolactate synthase 98.9 5.9E-09 1.3E-13 124.7 11.1 115 364-496 430-566 (569)
76 PF13292 DXP_synthase_N: 1-deo 98.9 7.6E-09 1.6E-13 111.2 9.8 118 363-496 110-270 (270)
77 TIGR03846 sulfopy_beta sulfopy 98.9 1E-08 2.3E-13 105.6 10.2 111 364-497 42-156 (181)
78 PRK06725 acetolactate synthase 98.9 8.2E-09 1.8E-13 123.6 10.7 110 364-496 422-544 (570)
79 cd03375 TPP_OGFOR Thiamine pyr 98.8 1.8E-08 3.8E-13 104.8 10.6 113 364-496 51-183 (193)
80 cd03376 TPP_PFOR_porB_like Thi 98.8 1.5E-08 3.3E-13 108.5 8.7 114 363-496 61-199 (235)
81 cd02009 TPP_SHCHC_synthase Thi 98.8 1.3E-08 2.9E-13 103.9 7.8 109 364-496 51-174 (175)
82 PRK06546 pyruvate dehydrogenas 98.8 2.4E-08 5.1E-13 119.8 10.9 110 364-496 408-529 (578)
83 PRK09628 oorB 2-oxoglutarate-a 98.8 2.2E-08 4.7E-13 109.8 9.6 111 366-496 70-200 (277)
84 cd02018 TPP_PFOR Thiamine pyro 98.7 2.9E-08 6.3E-13 106.5 9.0 119 364-496 64-202 (237)
85 PRK11269 glyoxylate carboligas 98.7 4.3E-08 9.3E-13 117.9 10.6 117 364-497 419-556 (591)
86 PRK07092 benzoylformate decarb 98.7 4.3E-08 9.4E-13 116.3 10.5 109 364-496 407-529 (530)
87 PRK06154 hypothetical protein; 98.7 4.6E-08 9.9E-13 117.1 10.6 115 364-496 431-554 (565)
88 COG0028 IlvB Thiamine pyrophos 98.7 3E-08 6.6E-13 118.1 8.8 115 364-499 408-533 (550)
89 PRK08266 hypothetical protein; 98.7 5.6E-08 1.2E-12 115.6 10.9 116 364-502 402-530 (542)
90 TIGR01504 glyox_carbo_lig glyo 98.7 2.9E-08 6.4E-13 119.3 7.9 116 364-496 418-554 (588)
91 PRK05778 2-oxoglutarate ferred 98.7 1.1E-07 2.3E-12 105.5 11.5 120 365-504 71-212 (301)
92 PRK12474 hypothetical protein; 98.7 7.9E-08 1.7E-12 113.8 10.9 112 364-496 389-518 (518)
93 PRK07525 sulfoacetaldehyde ace 98.7 5.3E-08 1.1E-12 117.0 9.2 114 364-497 435-562 (588)
94 TIGR02720 pyruv_oxi_spxB pyruv 98.6 6.8E-08 1.5E-12 115.8 9.9 114 364-496 408-531 (575)
95 PRK07064 hypothetical protein; 98.6 9.8E-08 2.1E-12 113.5 10.5 113 364-497 405-528 (544)
96 TIGR03457 sulphoacet_xsc sulfo 98.6 9.2E-08 2E-12 114.7 10.4 116 364-497 430-557 (579)
97 TIGR03297 Ppyr-DeCO2ase phosph 98.6 1.7E-07 3.7E-12 106.3 11.5 115 364-498 221-337 (361)
98 PRK07586 hypothetical protein; 98.6 1.1E-07 2.4E-12 112.3 10.0 112 364-496 385-514 (514)
99 PRK08199 thiamine pyrophosphat 98.6 1.6E-07 3.4E-12 112.2 11.3 113 364-497 415-538 (557)
100 PRK09124 pyruvate dehydrogenas 98.6 1.5E-07 3.1E-12 112.9 10.9 113 364-497 408-530 (574)
101 PRK09107 acetolactate synthase 98.6 1.1E-07 2.5E-12 114.4 9.9 114 364-498 430-555 (595)
102 PRK11869 2-oxoacid ferredoxin 98.6 1.3E-07 2.9E-12 103.6 9.5 110 366-496 62-192 (280)
103 PRK11865 pyruvate ferredoxin o 98.6 8.2E-07 1.8E-11 98.2 15.2 124 364-503 69-219 (299)
104 PRK07710 acetolactate synthase 98.6 1.9E-07 4.1E-12 111.9 10.7 112 364-498 424-549 (571)
105 PRK08155 acetolactate synthase 98.6 2E-07 4.4E-12 111.4 11.0 110 364-496 419-542 (564)
106 PRK06112 acetolactate synthase 98.6 1.8E-07 3.8E-12 112.3 10.3 110 364-496 437-559 (578)
107 PRK06882 acetolactate synthase 98.6 2.2E-07 4.8E-12 111.3 11.1 113 364-498 421-547 (574)
108 CHL00099 ilvB acetohydroxyacid 98.6 2.2E-07 4.7E-12 111.8 11.0 112 364-496 430-554 (585)
109 PRK06457 pyruvate dehydrogenas 98.6 2.4E-07 5.2E-12 110.5 11.3 114 364-497 396-519 (549)
110 PRK07979 acetolactate synthase 98.6 2.1E-07 4.5E-12 111.6 10.6 116 364-497 421-548 (574)
111 TIGR02418 acolac_catab acetola 98.6 2.4E-07 5.2E-12 110.1 11.0 114 364-498 408-531 (539)
112 PRK07418 acetolactate synthase 98.6 1.3E-07 2.7E-12 114.4 8.5 115 362-497 432-559 (616)
113 PRK05858 hypothetical protein; 98.6 1.5E-07 3.2E-12 112.1 9.0 110 364-496 407-529 (542)
114 PRK06466 acetolactate synthase 98.5 1.8E-07 3.8E-12 112.2 9.7 114 364-497 423-548 (574)
115 PLN02573 pyruvate decarboxylas 98.5 1.5E-07 3.3E-12 112.9 9.1 114 364-496 428-551 (578)
116 TIGR00118 acolac_lg acetolacta 98.5 1.9E-07 4.2E-12 111.4 9.6 112 364-498 412-537 (558)
117 PRK08322 acetolactate synthase 98.5 2.7E-07 5.9E-12 109.8 10.5 113 364-497 406-528 (547)
118 PRK06456 acetolactate synthase 98.5 2.4E-07 5.2E-12 110.9 9.8 114 364-498 421-546 (572)
119 PRK08617 acetolactate synthase 98.5 3.5E-07 7.6E-12 109.1 11.0 114 364-498 414-537 (552)
120 PRK06965 acetolactate synthase 98.5 4.1E-07 8.8E-12 109.5 11.3 113 364-496 437-561 (587)
121 PLN02470 acetolactate synthase 98.5 4E-07 8.7E-12 109.4 11.1 113 364-497 426-557 (585)
122 PRK08527 acetolactate synthase 98.5 4.7E-07 1E-11 108.4 11.4 114 364-498 414-539 (563)
123 PRK11866 2-oxoacid ferredoxin 98.5 3.5E-07 7.5E-12 100.4 9.3 112 364-496 59-191 (279)
124 PRK08979 acetolactate synthase 98.5 5E-07 1.1E-11 108.4 11.5 114 364-497 421-546 (572)
125 PRK08611 pyruvate oxidase; Pro 98.5 3.6E-07 7.8E-12 109.7 10.2 114 364-498 408-531 (576)
126 PRK08978 acetolactate synthase 98.5 3.5E-07 7.7E-12 109.0 10.0 114 364-498 401-526 (548)
127 PRK11867 2-oxoglutarate ferred 98.5 6.4E-07 1.4E-11 98.8 11.2 126 365-520 70-216 (286)
128 TIGR03393 indolpyr_decarb indo 98.5 2.4E-07 5.2E-12 110.3 8.4 112 364-496 404-526 (539)
129 PRK08273 thiamine pyrophosphat 98.5 7.2E-07 1.5E-11 107.6 11.3 113 364-497 415-546 (597)
130 PRK07789 acetolactate synthase 98.4 6.2E-07 1.4E-11 108.4 10.3 114 364-497 447-576 (612)
131 TIGR02177 PorB_KorB 2-oxoacid: 98.4 6.2E-07 1.3E-11 98.8 7.9 110 366-496 55-185 (287)
132 PRK06276 acetolactate synthase 98.4 1.3E-06 2.8E-11 105.2 11.4 112 364-496 419-542 (586)
133 TIGR03254 oxalate_oxc oxalyl-C 98.4 1.6E-06 3.4E-11 103.7 11.8 111 364-496 417-537 (554)
134 PRK09259 putative oxalyl-CoA d 98.4 1.4E-06 3E-11 104.5 11.3 111 364-496 424-545 (569)
135 TIGR03394 indol_phenyl_DC indo 98.4 8.4E-07 1.8E-11 105.7 9.0 110 364-496 403-520 (535)
136 PRK07449 2-succinyl-5-enolpyru 98.4 5.4E-07 1.2E-11 107.8 7.4 111 364-496 425-548 (568)
137 PRK06048 acetolactate synthase 98.4 1.7E-06 3.7E-11 103.6 11.2 113 364-497 414-538 (561)
138 PRK07282 acetolactate synthase 98.3 1.9E-06 4.2E-11 103.3 10.5 113 364-498 418-542 (566)
139 TIGR03336 IOR_alpha indolepyru 98.2 3.7E-06 8E-11 101.5 10.6 113 364-496 403-529 (595)
140 COG3958 Transketolase, C-termi 98.0 9.6E-05 2.1E-09 80.7 14.7 195 645-917 16-218 (312)
141 COG3957 Phosphoketolase [Carbo 98.0 8.9E-05 1.9E-09 88.3 15.5 99 364-476 153-257 (793)
142 PLN02980 2-oxoglutarate decarb 97.8 3.4E-05 7.3E-10 102.9 9.1 115 361-497 756-889 (1655)
143 KOG4166 Thiamine pyrophosphate 97.6 0.0001 2.2E-09 83.3 7.2 113 364-497 524-647 (675)
144 KOG1185 Thiamine pyrophosphate 97.5 0.00062 1.3E-08 78.5 11.9 111 366-496 432-559 (571)
145 PRK12270 kgd alpha-ketoglutara 97.4 8.4E-05 1.8E-09 91.3 3.9 92 730-840 651-748 (1228)
146 PF09364 XFP_N: XFP N-terminal 97.3 0.0009 1.9E-08 75.3 9.9 183 265-482 46-250 (379)
147 COG3961 Pyruvate decarboxylase 97.2 0.00082 1.8E-08 78.3 8.4 115 364-497 411-535 (557)
148 cd06586 TPP_enzyme_PYR Pyrimid 97.1 0.0031 6.7E-08 62.1 10.2 116 698-844 34-154 (154)
149 COG1013 PorB Pyruvate:ferredox 97.0 0.0066 1.4E-07 67.6 12.8 114 364-496 70-203 (294)
150 COG2609 AceE Pyruvate dehydrog 96.9 1.7 3.8E-05 53.0 37.9 127 366-501 194-395 (887)
151 COG3960 Glyoxylate carboligase 96.7 0.0017 3.8E-08 71.7 5.1 125 360-504 415-563 (592)
152 COG3962 Acetolactate synthase 96.4 0.017 3.7E-07 66.7 10.1 110 364-496 444-574 (617)
153 KOG1184 Thiamine pyrophosphate 96.0 0.015 3.3E-07 68.0 7.7 113 364-496 415-538 (561)
154 cd03377 TPP_PFOR_PNO Thiamine 94.7 0.24 5.1E-06 56.8 11.3 95 392-496 152-266 (365)
155 COG4231 Indolepyruvate ferredo 94.5 0.16 3.4E-06 61.2 9.6 110 364-494 428-551 (640)
156 PRK08659 2-oxoglutarate ferred 93.4 0.71 1.5E-05 53.4 12.1 120 701-847 51-174 (376)
157 TIGR03336 IOR_alpha indolepyru 93.1 0.88 1.9E-05 55.6 12.9 114 707-850 54-169 (595)
158 PRK07119 2-ketoisovalerate fer 91.9 3.5 7.6E-05 47.3 15.1 182 705-917 54-272 (352)
159 TIGR02176 pyruv_ox_red pyruvat 91.9 1.2 2.6E-05 58.5 12.6 94 392-496 952-1066(1165)
160 PRK09627 oorA 2-oxoglutarate-a 91.4 2.1 4.5E-05 49.6 12.7 110 707-846 55-172 (375)
161 cd07038 TPP_PYR_PDC_IPDC_like 91.2 0.81 1.8E-05 46.5 8.1 105 372-494 50-160 (162)
162 cd07035 TPP_PYR_POX_like Pyrim 89.6 2.5 5.4E-05 42.0 9.9 92 392-494 61-153 (155)
163 PF01855 POR_N: Pyruvate flavo 89.2 0.51 1.1E-05 51.0 5.0 112 705-850 42-160 (230)
164 cd06586 TPP_enzyme_PYR Pyrimid 89.2 1.2 2.6E-05 43.8 7.3 104 371-494 49-152 (154)
165 PRK08366 vorA 2-ketoisovalerat 88.3 1.7 3.7E-05 50.5 8.8 114 705-852 55-174 (390)
166 cd07039 TPP_PYR_POX Pyrimidine 85.8 4.5 9.8E-05 41.3 9.2 92 392-494 65-156 (164)
167 cd07034 TPP_PYR_PFOR_IOR-alpha 85.7 3.4 7.5E-05 41.3 8.3 90 393-494 67-158 (160)
168 TIGR03710 OAFO_sf 2-oxoacid:ac 84.8 3.8 8.2E-05 49.9 9.5 117 705-850 243-366 (562)
169 PF02776 TPP_enzyme_N: Thiamin 84.4 5 0.00011 40.9 8.9 93 392-494 66-159 (172)
170 TIGR03845 sulfopyru_alph sulfo 83.7 11 0.00025 38.3 11.0 92 392-494 59-152 (157)
171 PRK09193 indolepyruvate ferred 83.5 4.5 9.8E-05 53.0 9.8 112 364-494 481-614 (1165)
172 PRK08367 porA pyruvate ferredo 83.1 4.2 9.2E-05 47.4 8.6 112 705-850 56-175 (394)
173 PRK09622 porA pyruvate flavodo 83.0 3.3 7.1E-05 48.5 7.7 109 707-849 64-180 (407)
174 PRK08659 2-oxoglutarate ferred 83.0 5.1 0.00011 46.5 9.1 113 368-505 59-178 (376)
175 PRK13030 2-oxoacid ferredoxin 82.3 4.1 8.9E-05 53.4 8.8 112 363-494 467-600 (1159)
176 COG1165 MenD 2-succinyl-6-hydr 80.5 4 8.7E-05 49.0 7.2 108 366-499 424-548 (566)
177 TIGR03845 sulfopyru_alph sulfo 80.4 8.7 0.00019 39.1 8.8 108 705-846 40-156 (157)
178 KOG4166 Thiamine pyrophosphate 78.7 5.6 0.00012 46.3 7.3 155 307-494 89-248 (675)
179 PRK07119 2-ketoisovalerate fer 78.5 8 0.00017 44.5 8.7 106 369-503 60-176 (352)
180 PF01855 POR_N: Pyruvate flavo 72.9 9.7 0.00021 41.3 7.1 88 403-504 66-161 (230)
181 PRK09627 oorA 2-oxoglutarate-a 72.2 9.4 0.0002 44.3 7.2 110 369-505 59-177 (375)
182 PRK13029 2-oxoacid ferredoxin 68.5 16 0.00035 48.1 8.7 113 363-494 494-628 (1186)
183 cd07037 TPP_PYR_MenD Pyrimidin 68.1 13 0.00028 38.1 6.4 94 392-494 62-160 (162)
184 PRK08611 pyruvate oxidase; Pro 67.5 22 0.00047 43.5 9.3 93 392-495 70-162 (576)
185 PRK07525 sulfoacetaldehyde ace 67.2 27 0.00058 42.8 10.0 93 392-495 70-162 (588)
186 PRK07789 acetolactate synthase 66.9 23 0.00049 43.6 9.3 93 392-495 96-189 (612)
187 PF03894 XFP: D-xylulose 5-pho 66.8 92 0.002 32.8 12.1 146 653-830 16-177 (179)
188 TIGR03297 Ppyr-DeCO2ase phosph 65.4 18 0.00039 41.8 7.6 114 706-847 33-155 (361)
189 TIGR03710 OAFO_sf 2-oxoacid:ac 65.4 21 0.00046 43.6 8.6 107 369-503 249-365 (562)
190 TIGR03457 sulphoacet_xsc sulfo 65.0 26 0.00056 42.7 9.3 93 392-495 66-158 (579)
191 COG0028 IlvB Thiamine pyrophos 64.3 31 0.00068 42.1 9.7 94 391-495 65-159 (550)
192 PRK09622 porA pyruvate flavodo 63.3 35 0.00075 40.1 9.5 104 369-499 68-178 (407)
193 PRK07418 acetolactate synthase 61.8 33 0.00072 42.2 9.5 93 392-495 87-180 (616)
194 PRK11269 glyoxylate carboligas 59.7 29 0.00063 42.5 8.4 93 392-495 70-163 (591)
195 PRK13029 2-oxoacid ferredoxin 59.7 37 0.0008 44.9 9.6 104 809-913 176-307 (1186)
196 PRK06457 pyruvate dehydrogenas 59.2 38 0.00081 41.1 9.2 93 392-495 66-158 (549)
197 TIGR02176 pyruv_ox_red pyruvat 59.1 37 0.0008 45.2 9.6 110 705-849 57-174 (1165)
198 COG0674 PorA Pyruvate:ferredox 58.6 39 0.00085 39.1 8.8 86 403-500 77-169 (365)
199 PRK08273 thiamine pyrophosphat 58.2 30 0.00064 42.5 8.1 93 392-495 69-162 (597)
200 cd07034 TPP_PYR_PFOR_IOR-alpha 57.9 1.1E+02 0.0025 30.4 11.0 115 698-842 41-158 (160)
201 PRK07979 acetolactate synthase 57.8 45 0.00098 40.6 9.6 93 392-495 69-162 (574)
202 PRK08155 acetolactate synthase 57.7 32 0.00069 41.8 8.3 93 392-495 78-171 (564)
203 PRK06112 acetolactate synthase 57.5 37 0.0008 41.4 8.8 93 392-495 76-169 (578)
204 TIGR03254 oxalate_oxc oxalyl-C 56.1 40 0.00087 40.9 8.7 95 392-495 67-162 (554)
205 PRK09107 acetolactate synthase 55.5 42 0.00092 41.2 8.9 93 392-495 76-169 (595)
206 PRK07064 hypothetical protein; 55.1 44 0.00095 40.3 8.8 95 392-495 68-164 (544)
207 PRK06725 acetolactate synthase 54.9 48 0.001 40.5 9.1 93 392-495 79-172 (570)
208 PRK06466 acetolactate synthase 54.4 52 0.0011 40.1 9.3 93 392-495 69-162 (574)
209 PRK12474 hypothetical protein; 54.1 47 0.001 40.0 8.8 93 392-495 70-163 (518)
210 PRK06456 acetolactate synthase 53.9 44 0.00095 40.7 8.6 93 392-495 70-163 (572)
211 PRK06276 acetolactate synthase 53.8 53 0.0012 40.2 9.3 93 392-495 65-158 (586)
212 PRK08266 hypothetical protein; 52.6 65 0.0014 38.9 9.7 93 392-495 70-166 (542)
213 PRK07586 hypothetical protein; 52.2 58 0.0013 39.0 9.2 93 392-495 66-159 (514)
214 PRK08978 acetolactate synthase 50.7 55 0.0012 39.6 8.7 93 392-495 65-158 (548)
215 PRK08367 porA pyruvate ferredo 50.2 77 0.0017 37.2 9.4 87 403-503 80-175 (394)
216 TIGR00118 acolac_lg acetolacta 50.1 70 0.0015 38.8 9.5 93 392-495 66-159 (558)
217 PRK05647 purN phosphoribosylgl 49.8 78 0.0017 33.6 8.6 59 392-468 3-61 (200)
218 PRK08322 acetolactate synthase 49.7 74 0.0016 38.4 9.6 93 392-495 65-158 (547)
219 PLN02470 acetolactate synthase 49.4 63 0.0014 39.5 9.0 93 392-495 78-171 (585)
220 PRK06154 hypothetical protein; 48.6 47 0.001 40.5 7.7 92 392-496 83-175 (565)
221 TIGR01504 glyox_carbo_lig glyo 48.5 53 0.0012 40.3 8.2 94 392-496 69-163 (588)
222 PRK08366 vorA 2-ketoisovalerat 48.4 1E+02 0.0022 36.2 10.0 105 369-500 61-170 (390)
223 PRK09259 putative oxalyl-CoA d 48.2 83 0.0018 38.4 9.7 95 392-495 74-169 (569)
224 PRK07524 hypothetical protein; 47.8 95 0.0021 37.4 10.1 95 392-495 66-162 (535)
225 CHL00099 ilvB acetohydroxyacid 47.7 74 0.0016 39.0 9.2 93 392-495 78-171 (585)
226 PRK08199 thiamine pyrophosphat 46.8 85 0.0018 38.1 9.5 93 392-495 73-166 (557)
227 COG1303 Uncharacterized protei 46.4 43 0.00093 34.5 5.7 54 440-496 13-66 (179)
228 PRK08979 acetolactate synthase 46.3 84 0.0018 38.4 9.4 93 392-495 69-162 (572)
229 PRK08527 acetolactate synthase 45.6 81 0.0018 38.4 9.1 93 392-495 68-161 (563)
230 PRK06882 acetolactate synthase 45.2 96 0.0021 37.8 9.6 93 392-495 69-162 (574)
231 PLN02573 pyruvate decarboxylas 44.1 57 0.0012 40.0 7.5 95 392-495 80-180 (578)
232 COG4231 Indolepyruvate ferredo 44.0 65 0.0014 39.8 7.6 76 422-506 108-183 (640)
233 PRK06965 acetolactate synthase 42.8 88 0.0019 38.3 8.9 164 266-495 15-179 (587)
234 PRK08617 acetolactate synthase 41.4 1.1E+02 0.0023 37.2 9.2 93 392-495 69-162 (552)
235 PRK07710 acetolactate synthase 41.0 1.1E+02 0.0024 37.4 9.2 93 392-495 80-173 (571)
236 TIGR02720 pyruv_oxi_spxB pyruv 40.3 1.3E+02 0.0029 36.7 9.8 93 392-495 65-157 (575)
237 PRK06048 acetolactate synthase 40.1 1.1E+02 0.0024 37.2 9.0 93 392-495 72-165 (561)
238 PRK05858 hypothetical protein; 39.6 1.3E+02 0.0028 36.5 9.5 93 392-495 69-162 (542)
239 PF02776 TPP_enzyme_N: Thiamin 38.6 63 0.0014 32.8 5.8 122 698-850 39-167 (172)
240 PRK08327 acetolactate synthase 37.9 1E+02 0.0022 37.6 8.3 95 392-495 77-179 (569)
241 PRK07282 acetolactate synthase 37.6 1.3E+02 0.0028 36.8 9.1 93 392-495 75-168 (566)
242 TIGR03394 indol_phenyl_DC indo 37.4 1E+02 0.0023 37.3 8.2 96 392-496 65-164 (535)
243 PRK09124 pyruvate dehydrogenas 35.6 1.3E+02 0.0028 36.8 8.7 92 392-494 68-159 (574)
244 PF04273 DUF442: Putative phos 34.8 95 0.0021 30.0 5.9 48 446-496 45-95 (110)
245 PF09851 SHOCT: Short C-termin 34.7 51 0.0011 24.7 3.2 27 525-552 4-30 (31)
246 PRK06546 pyruvate dehydrogenas 34.5 1.7E+02 0.0036 36.0 9.4 93 392-495 68-160 (578)
247 PF13344 Hydrolase_6: Haloacid 34.4 25 0.00054 33.0 1.9 69 395-485 8-76 (101)
248 TIGR02418 acolac_catab acetola 32.7 1.8E+02 0.0039 35.1 9.2 93 392-495 63-156 (539)
249 KOG2733 Uncharacterized membra 31.5 85 0.0018 36.5 5.7 85 392-502 5-99 (423)
250 COG3960 Glyoxylate carboligase 31.2 96 0.0021 35.5 5.9 60 449-510 118-178 (592)
251 PF10925 DUF2680: Protein of u 29.0 1.4E+02 0.003 25.9 5.3 32 527-558 21-52 (59)
252 KOG1615 Phosphoserine phosphat 28.7 1.8E+02 0.0039 31.3 7.1 97 271-404 89-185 (227)
253 cd07035 TPP_PYR_POX_like Pyrim 28.5 1.6E+02 0.0036 29.0 6.7 114 698-843 34-154 (155)
254 TIGR00173 menD 2-succinyl-5-en 27.0 97 0.0021 36.4 5.5 95 392-495 65-164 (432)
255 PF07295 DUF1451: Protein of u 26.4 3.3E+02 0.0072 27.8 8.3 41 524-564 18-58 (146)
256 PRK07092 benzoylformate decarb 26.4 2.1E+02 0.0046 34.5 8.3 93 392-495 75-169 (530)
257 PF08312 cwf21: cwf21 domain; 25.4 1.5E+02 0.0031 24.6 4.5 32 526-558 13-44 (46)
258 PLN02331 phosphoribosylglycina 24.9 1.6E+02 0.0034 31.7 6.0 53 393-467 2-58 (207)
259 cd07033 TPP_PYR_DXS_TK_like Py 24.5 3.2E+02 0.0069 27.5 8.0 79 401-494 71-154 (156)
260 PRK13010 purU formyltetrahydro 24.3 2.9E+02 0.0063 31.1 8.3 54 390-467 93-150 (289)
261 COG0674 PorA Pyruvate:ferredox 24.2 2.2E+02 0.0047 33.2 7.5 111 705-850 53-171 (365)
262 TIGR00655 PurU formyltetrahydr 23.1 3.3E+02 0.0072 30.5 8.4 56 388-467 82-141 (280)
263 PF02779 Transket_pyr: Transke 22.9 3.2E+02 0.007 28.0 7.8 106 369-494 60-170 (178)
264 COG1240 ChlD Mg-chelatase subu 22.2 4.2E+02 0.0091 29.6 8.7 100 367-478 151-258 (261)
265 TIGR00639 PurN phosphoribosylg 20.2 4.6E+02 0.0099 27.6 8.3 56 392-465 2-57 (190)
No 1
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-247 Score=2046.71 Aligned_cols=845 Identities=63% Similarity=1.058 Sum_probs=801.9
Q ss_pred CCCCCCCCCCCCCCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccC------CCCCCCC---------------
Q 002419 51 APVPRPVPLSRLTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVG------QAATSPG--------------- 109 (925)
Q Consensus 51 ~~~~~~~~~~~~~~s~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~------~~~~~~~--------------- 109 (925)
++.++.++++...++||+|+++.||||||+.|++||+|||.||++||+++.+ ++++.|+
T Consensus 35 ~~~~r~~~~~~~td~Fl~g~ss~YveEmy~AW~~dP~SVh~SWDayFrn~~~~~~~~~~a~~~p~~~~~~~~~t~~~~~~ 114 (1017)
T KOG0450|consen 35 QQVPRSVAASVATDPFLSGTSSSYVEEMYRAWLEDPNSVHKSWDAYFRNVSAGAPPPAQASQAPLSRSAAVAGTQSAVAA 114 (1017)
T ss_pred ccccccccCcccccccccCcchHHHHHHHHHHHcCCchhhhhHHHHHHhcccCCCCccccccCCCccccccccccccccc
Confidence 5677888888899999999999999999999999999999999999998843 2222221
Q ss_pred -----CChhhHHHHHHHHHHHHHHHhcCccccccCCCCCCC---C-----CCCCCCCcccCCCCcccccceeecCccccc
Q 002419 110 -----ISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEE---R-----EIPDDLDPAFYGFTEADLDREFFLGVWSMA 176 (925)
Q Consensus 110 -----~~~~~~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~---~-----~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~ 176 (925)
.+++.+.++++|+.||||||.|||..|+|||||+.. + +.+++|++.+|||+|+|||++|.+. ++
T Consensus 115 ~~~t~~s~~~v~~hl~vqlLiRaYQirGH~~A~LDPLGi~~~~~~~~~p~~i~~~~~l~~Ygf~E~DLDref~L~---~t 191 (1017)
T KOG0450|consen 115 RPNTGISDKTVEDHLKVQLLIRAYQIRGHHKAKLDPLGINDADLDSSVPADIPEELTLAFYGFTEADLDREFHLP---TT 191 (1017)
T ss_pred ccCCCcccccHHHHHHHHHHHHHHHhcccccccCCccccccccccccCCCCCChhhhhhhcCCchhhccceeccC---Cc
Confidence 224678999999999999999999999999999843 1 2466799999999999999999883 45
Q ss_pred ccccCCCCCcCHHHHHHHHHHHhcCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002419 177 GFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATK 256 (925)
Q Consensus 177 ~~~~~~~~~~tl~eii~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~ 256 (925)
+|+++++..+|||||+++|+++||++||+|||||.|.++|+||++|||+|....+|.|+++-||.+|+++..||+||++|
T Consensus 192 ~Fi~~~~~~ltLreIl~rlE~~YC~~igvEfmhI~~~eqcnWir~k~EtP~~~q~s~e~k~~il~RL~~st~FE~FLa~K 271 (1017)
T KOG0450|consen 192 TFIGGGESSLTLREILRRLEKAYCGSIGVEFMHINDLEQCNWIRQKFETPGPMQYSHEQKRVILDRLTRSTRFEEFLATK 271 (1017)
T ss_pred ccccCCCccccHHHHHHHHHHHhhccceeEEEeeCcHHHhHHHHHhccCCCccccCHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 78888889999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhccccccccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCC
Q 002419 257 WTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGD 336 (925)
Q Consensus 257 ~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgD 336 (925)
|+..||||+||||++||||+.+|+.++++||+++|+||+||||+|+|+||+.||+++||+||.|.... + .||||
T Consensus 272 w~seKRFGLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~-D-----eGSGD 345 (1017)
T KOG0450|consen 272 WPSEKRFGLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAA-D-----EGSGD 345 (1017)
T ss_pred CCccccccccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHHHHhhHHHHHHHhccCCCCC-c-----CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999995443 3 37899
Q ss_pred ccccccccCCCCCC-CCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHh
Q 002419 337 VKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHL 415 (925)
Q Consensus 337 vkyHlg~s~~~~~~-~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~Ealnl 415 (925)
||||||++.++.+. +|+.|+|++++|||||+++.||++|+++|.|.+.+|.+++|++.|++||||||+|||+|||||++
T Consensus 346 VKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hl 425 (1017)
T KOG0450|consen 346 VKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHL 425 (1017)
T ss_pred eeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccccceeEEEEEecchhhccCceEEEeecc
Confidence 99999999999887 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 416 SALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 416 A~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+.||+|+|||+||||+|||+||||+|+.+||++||+|+||+.++||||||+||||||..+|+.|.|||.+|++||+||++
T Consensus 426 s~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlV 505 (1017)
T KOG0450|consen 426 SDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLV 505 (1017)
T ss_pred ccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-cchhh
Q 002419 496 CYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNR-RDWLS 574 (925)
Q Consensus 496 tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~-~~~~~ 574 (925)
|||++||||.|+|+||||.||++|+++++.++.|.++|+++|.+|++|+++..+.+...+++||+.++++.|.. ++|++
T Consensus 506 cyRR~GHNE~DeP~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~~~~~rdWL~ 585 (1017)
T KOG0450|consen 506 CYRRHGHNEIDEPMFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYKPLHIRDWLD 585 (1017)
T ss_pred EEeecCCCcccCccccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999765 89999
Q ss_pred hhccCCCCcccc---cccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 002419 575 AYWSGFKSPEQL---SRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLV 651 (925)
Q Consensus 575 ~~w~~~~~~~~~---~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~ 651 (925)
.+|.+|.+|+.. ...++|||+.++|+.||+++.++||+|++|+.|+|+|+.|.+|+++ ++||||+||+|||+|||.
T Consensus 586 spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hrgl~Ril~~R~~mi~~-~~iDwal~EalAFgsLl~ 664 (1017)
T KOG0450|consen 586 SPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHRGLKRILKNRAQMIKS-EGVDWALAEALAFGSLLK 664 (1017)
T ss_pred CCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhhhHHHHHHHHHHhhhh-cccchHHHHHHHHHHHHh
Confidence 999999987322 2356799999999999999999999999999999999999999998 899999999999999999
Q ss_pred cCCcEEEecccCCCcccccccceeeecCCC-ceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeec
Q 002419 652 EGNHVRLSGQDVERGTFSHRHSVLHDQETG-EQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWE 730 (925)
Q Consensus 652 ~~~~v~l~GqDv~rGtF~~RHav~~dq~t~-~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwE 730 (925)
||.+||||||||+||||||||+|||||+++ ++|+||++|+ ..|+++.|.||.|||+||||||+||||++|+.|||||
T Consensus 665 EG~hVRlSGQDVERGTFShRH~VLHDQ~~d~~~y~PlnhL~--~~Qa~ytV~NSSLSEygVLGFElGYsm~sPNaLVlWE 742 (1017)
T KOG0450|consen 665 EGIHVRLSGQDVERGTFSHRHHVLHDQEVDKRTYIPLNHLW--PNQAPYTVCNSSLSEYGVLGFELGYSMASPNALVLWE 742 (1017)
T ss_pred cCceEEeecccccccccccchhhhcccccCcceecchhhcC--CCCCceeeeccchhhhheecceecccccCCCceEEee
Confidence 999999999999999999999999999999 8999999999 7899999999999999999999999999999999999
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccC
Q 002419 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN 810 (925)
Q Consensus 731 aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~N 810 (925)
||||||+|+||+||||||++|++||.+++||||+|||||+|+||||||+|+|||||||+|||++||.....+.+|+|+||
T Consensus 743 AQFGDFaNtAQ~IiDQFIssGqaKW~rqsGlVllLPHGyeG~GPEHSSaR~ERfLQm~nddp~~~p~~~~~~~~Ql~dcN 822 (1017)
T KOG0450|consen 743 AQFGDFANTAQCIIDQFISSGQAKWVRQSGLVLLLPHGYEGMGPEHSSARPERFLQMSNDDPDVFPDEEEFLQRQLQDCN 822 (1017)
T ss_pred hhhccccccchhhHHhHhccchhhhhhhcCeEEEccCCcCCCCcccccccHHHHHHhccCCCccCCcccHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988756889999999
Q ss_pred eEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCC
Q 002419 811 WQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEE 890 (925)
Q Consensus 811 l~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~ 890 (925)
|+||||||||||||+|||||+++||||||+|+||+|||||.|.|+++||.+ |+.||+||+|....+.+|+
T Consensus 823 w~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~----------g~~fq~vi~e~g~~~~~pe 892 (1017)
T KOG0450|consen 823 WQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDE----------GTGFQRVIPEDGKAAQNPE 892 (1017)
T ss_pred eEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhcc----------CCCCceeccccccccCChh
Confidence 999999999999999999999999999999999999999999999999996 6899999999776677899
Q ss_pred CccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 891 GIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 891 ~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
+|||||||||||||||.++++.---.+
T Consensus 893 ~vkrlv~csGkVyydL~k~Rk~~~~~~ 919 (1017)
T KOG0450|consen 893 NVKRLVFCSGKVYYDLTKERKEVGLEG 919 (1017)
T ss_pred hceEEEEecceEehhhhHHHHhcCccc
Confidence 999999999999999999998765333
No 2
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.7e-214 Score=1849.91 Aligned_cols=791 Identities=47% Similarity=0.778 Sum_probs=727.0
Q ss_pred cCCC-CHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCC--C--C--CCCCCChhhHHHHHHHHHHHHHHHhcCccccccC
Q 002419 67 LDGT-SSVYLEELQRSWEADPNSVDESWQNFFRNFVGQ--A--A--TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLD 139 (925)
Q Consensus 67 l~g~-N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~~--~--~--~~~~~~~~~~~~~~~~~~li~ayr~~GH~~A~ld 139 (925)
+.|. ...|+-.+-+.-+.. |.=|...|+.+.-+ . + ..+......+.|..+|++||+|||.||||.|++|
T Consensus 332 IdGA~sg~FL~~ik~lLeG~----d~Fyd~iF~~L~iPYePvrw~~D~~~~~~~~i~K~arv~elI~ayR~rGHLmAd~d 407 (1228)
T PRK12270 332 IQGAESGEFLRTIHQLLLGE----DGFYDEIFESLRIPYEPVRWATDIPADHEDEVDKNARVMELIHAYRVRGHLMADTD 407 (1228)
T ss_pred eccHhHHHHHHHHHHHHhcc----cchHHHHHHHhCCCCCCccccCCCCCCchhhhhHHHHHHHHHHHHHhccchhccCC
Confidence 4444 445666665555534 56688889877211 0 1 0122345678999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCccccccccCCCHHHHHHH
Q 002419 140 PLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNWL 219 (925)
Q Consensus 140 PL~~~~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L~~~Ycg~ig~E~~hi~~~~~~~Wl 219 (925)
||++..+ ..|+||+..||||-+|||++|.+| ||. |++.|+||||+..|+++||++||+|||||.|++||.||
T Consensus 408 PL~~~~r-~hpdLd~~~hGLTlWDLdR~f~~g-----gf~--g~~~m~LrdiL~~LRdsYcr~vg~EymhI~dpeqr~W~ 479 (1228)
T PRK12270 408 PLEYRQR-SHPDLDVLTHGLTLWDLDREFPVG-----GFG--GKERMKLRDILGVLRDSYCRTVGIEYMHIQDPEQRRWL 479 (1228)
T ss_pred ccccccc-CCCCCCccccCCCHHhcCceeecC-----CcC--CcccccHHHHHHHHHHHHhhhheeeeeecCCHHHHHHH
Confidence 9998544 679999999999999999999998 554 67889999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCCCcEEEcCCccch
Q 002419 220 RDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGR 299 (925)
Q Consensus 220 ~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgr 299 (925)
|+|||.+. .+++.+++++|+++|..+++||.||++||.++||||+||.|++||.|+++|+.|++.|.+++||||+||||
T Consensus 480 Q~rvE~~~-~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGR 558 (1228)
T PRK12270 480 QERVERPH-EKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGR 558 (1228)
T ss_pred HHHhhCCC-CCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceeeeecchhhHHHHHHHHHHHHHhcCCceEEecccccch
Confidence 99999764 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhh
Q 002419 300 LNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRA 379 (925)
Q Consensus 300 ln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A 379 (925)
+|||+|++|||+.+||+||.|+-++... .||||||||||+........|+.|.++|++|||||++++||..|++||
T Consensus 559 LNVLani~gK~y~qiF~EFegn~dp~~~----~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRa 634 (1228)
T PRK12270 559 LNVLANIVGKPYSQIFREFEGNLDPRSA----QGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRA 634 (1228)
T ss_pred HHHHHHHhcCCHHHHHHHhcCCCCcccc----CcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhh
Confidence 9999999999999999999999876554 699999999998877777778889999999999999999999999999
Q ss_pred hhhhcCCC-CCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcC
Q 002419 380 KQYYSNDM-DRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALD 458 (925)
Q Consensus 380 ~q~~~~d~-~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~g 458 (925)
+|+..+.. .+..+++|++|||+||+|||+|+||||||+|++|.|||+||||+||||||||.+.++||+.|++|+||+++
T Consensus 635 kQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~ 714 (1228)
T PRK12270 635 KQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQ 714 (1228)
T ss_pred hhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcC
Confidence 99987632 34579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCC
Q 002419 459 APIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQH 538 (925)
Q Consensus 459 iP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi 538 (925)
+|+|||||||||||++++++|++||++|+||||||++|||++||||+|||++|||.||+.|..++++.++|.+.|+.+|.
T Consensus 715 ~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svrk~yte~Ligrgd 794 (1228)
T PRK12270 715 APIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVRKLYTEALIGRGD 794 (1228)
T ss_pred CCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchh
Q 002419 539 VTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRG 618 (925)
Q Consensus 539 ~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~ 618 (925)
+|+||++++.++++++|+++|++.++....+....... .........++|.|+.+.|+.|+++..++|++|++||+
T Consensus 795 it~ee~e~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~----~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hpk 870 (1228)
T PRK12270 795 ITVEEAEQALRDYQGQLERVFNEVREAEKKPPEPPESV----ESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHPK 870 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc----cccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccChh
Confidence 99999999999999999999999987542211100000 01111223568999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcc
Q 002419 619 VKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEM 698 (925)
Q Consensus 619 l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~ 698 (925)
|++++++|.+|+.+ .+||||++|.|||+|||.+|..|||+|||+.||||+||||||||.+||++|+||++|. +.+|+
T Consensus 871 l~~~l~~R~~m~~~-g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~--~~q~~ 947 (1228)
T PRK12270 871 LKPLLEKRREMARE-GGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLS--DDQGK 947 (1228)
T ss_pred hHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcC--CCcce
Confidence 99999999999985 4699999999999999999999999999999999999999999999999999999999 89999
Q ss_pred eEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCccCCC
Q 002419 699 FTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSS 778 (925)
Q Consensus 699 ~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs 778 (925)
|.|+||+|||+|+||||||||+++|..||+||||||||+||||.|||+||+|+|.||+++|+|||+|||||+||||+|||
T Consensus 948 f~vydS~LSEyAa~GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss~e~KWgQ~S~vvlLLPHGyEGQGPdHSS 1027 (1228)
T PRK12270 948 FLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSGEAKWGQRSGVVLLLPHGYEGQGPDHSS 1027 (1228)
T ss_pred EEEecchhhHHHhhccceeeecCCCcceeeehhhhcccccchHHHHHHHHhhhHhhhccccceEEEccCCcCCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCccc
Q 002419 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSE 858 (925)
Q Consensus 779 ~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~ 858 (925)
+|||||||||+|+ ||.|++|||||+||||||||..+..++|||||+||+|||+|.|+|+++|
T Consensus 1028 aRiERfLqlcAe~------------------nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~ved 1089 (1228)
T PRK12270 1028 ARIERFLQLCAEG------------------NMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVED 1089 (1228)
T ss_pred HHHHHHHHhhccC------------------CeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHH
Confidence 9999999999994 9999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHH
Q 002419 859 FDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYF 912 (925)
Q Consensus 859 ~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~ 912 (925)
|++ |+|++||+|+.. .++++|||||||||||||||.+++.-
T Consensus 1090 FT~-----------g~F~pVi~D~~~--~~~~~V~RVlLcSGKvYYdL~a~R~k 1130 (1228)
T PRK12270 1090 FTE-----------GKFRPVIDDPTV--DDGAKVRRVLLCSGKLYYDLAARREK 1130 (1228)
T ss_pred hcc-----------CCceecCCCCCC--CCccceeEEEEEcchhHHHHHHHHHh
Confidence 997 999999999974 46678999999999999999999865
No 3
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=4.4e-212 Score=1844.29 Aligned_cols=797 Identities=54% Similarity=0.897 Sum_probs=753.2
Q ss_pred CCCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCCC---CCC--C-CCChhhHHHHHHHHHHHHHHHhcCccc
Q 002419 62 LTDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQA---ATS--P-GISGQTIQESMRLLLLVRAYQVNGHMK 135 (925)
Q Consensus 62 ~~~s~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~~~---~~~--~-~~~~~~~~~~~~~~~li~ayr~~GH~~ 135 (925)
.+.++|+|+|+.|||+||++|++||+|||++|+.||+++.... +.. . ........++.++++||+|||.+||+.
T Consensus 5 ~~~~~l~g~n~~~ie~ly~~~~~~p~svd~~w~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ayR~~Ghl~ 84 (906)
T COG0567 5 LNTSYLSGANAAYIEELYEQYLQDPNSVDPSWQEFFDGLSDPVRESFRRLAKKGNDPDATLKSVKVLRLINAYRSRGHLH 84 (906)
T ss_pred cccccccCcchHHHHHHHHHHhhCCcccCHHHHHHHHhcCcchhhhhhhhcccccchhhhHHHHHHHHHHHHHHHhchhh
Confidence 4678999999999999999999999999999999999985431 100 0 122345678999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCccccccccCCCHHH
Q 002419 136 AKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREK 215 (925)
Q Consensus 136 A~ldPL~~~~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L~~~Ycg~ig~E~~hi~~~~~ 215 (925)
|+||||++ +++.+++|++++||||++||++.|.++. .++ ++..+||+||++.|+++|||+||+|||||.|+++
T Consensus 85 a~ldPL~~-~~~~~~~l~~~~~glt~~d~~~~~~~~~----~~~--~~~~~~l~e~~~~l~~~Ycgsig~E~~hi~~~~~ 157 (906)
T COG0567 85 ANLDPLGL-KRPDVPELDPEFHGLTEADLDETFNIGD----GFL--GKETMTLRELIEILKKTYCGSIGVEYMHISDPEE 157 (906)
T ss_pred hcCCcccC-CCCCccccCHhhcCCCHHHHhccccccc----ccc--ccccccHHHHHHHHHHHhccceeeeeeccCCHHH
Confidence 99999997 6777899999999999999999997442 333 6778999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCCCcEEEcCC
Q 002419 216 CNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMP 295 (925)
Q Consensus 216 ~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~ 295 (925)
|.||++|||+ ..+.++.|+++.+|++|+.++.||+||++||+++||||+||+||++|+|..+|+.|+..|++++|+||+
T Consensus 158 ~~Wl~~riE~-~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~~~~~G~~~vviGMa 236 (906)
T COG0567 158 KRWLQERIES-GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFSLEGGESLIPMLDELIDRAGKQGVKEVVIGMA 236 (906)
T ss_pred HHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccchhhHHHHHHHHHHHHHhcCcceEEeccc
Confidence 9999999999 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeeh
Q 002419 296 HRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIG 375 (925)
Q Consensus 296 HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G 375 (925)
||||||||+||+|||++.||+||.|+.... ..|||||||+|++.++.+.+| .|||+|++|||||++++||+.|
T Consensus 237 HRGRLNvL~nvlgKp~~~if~eF~g~~~~~------~~sGDVKYH~G~~~~~~~~~~-~v~l~La~NPSHLE~v~PVV~G 309 (906)
T COG0567 237 HRGRLNVLVNVLGKPYRDIFDEFEGKSAEP------DLSGDVKYHLGFSSDRQTDGG-KVHLSLAFNPSHLEIVNPVVEG 309 (906)
T ss_pred ccchHHHHHHHhCCCHHHHHHHhCCCCCCC------CcccccccccccccccccCCC-eeEEEecCCcchhhhhchhhhc
Confidence 999999999999999999999999987544 248999999999999888877 7999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHh
Q 002419 376 KTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAK 455 (925)
Q Consensus 376 ~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Ak 455 (925)
.++|+|++..+....++++|++|||+||+|||+|+|+|||+++++|+|||+||||+|||+||||.|.++||++||||+||
T Consensus 310 ~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAK 389 (906)
T COG0567 310 SVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAK 389 (906)
T ss_pred chHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhh
Confidence 99999999998777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHH
Q 002419 456 ALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLE 535 (925)
Q Consensus 456 a~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~ 535 (925)
++++|++||||+|||||..|++.|++||++|++||+||++|||++||||+|+|++|||.||+.|++|+.+.+.|.++|++
T Consensus 390 m~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs~TqP~mY~~I~~h~t~r~~ya~~Lv~ 469 (906)
T COG0567 390 MIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPSVTQPLMYQKIKKHPTVRKLYADKLIA 469 (906)
T ss_pred ccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCccccccccCHHHHHHHhcCCChhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCc
Q 002419 536 CQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKP 615 (925)
Q Consensus 536 ~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~ 615 (925)
+|++|+++++++.+++++.++..+...+.+. ..+++...|.++.... . ...+|+++.+.|+.++.+++++|++|++
T Consensus 470 ~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~-~~~~t~v~~~~L~~L~~kl~~~Pe~f~~ 545 (906)
T COG0567 470 EGVISEEEADELVNDYRDALDQGFEVVKEYK--EMDWLEGDWSGYLNAG-L-RHVDTGVPKKTLKELGKKLCTIPEGFEV 545 (906)
T ss_pred hccccHHHHHHHHHHHHHHhhhhhhHHhHHH--hhhccccccccccCCc-c-cccccccCHHHHHHHHHHhhcCCcceeh
Confidence 9999999999999999999999999888766 5567888898887654 2 5678999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCC
Q 002419 616 HRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQD 695 (925)
Q Consensus 616 h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~ 695 (925)
|+++++++++|.+|.+++.++||++||.|||++|+.+|.+||++|||++||||+|||+|+|||.|+++|+||++|+ ..
T Consensus 546 h~~v~~~~~~r~~~~~~~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~--~~ 623 (906)
T COG0567 546 HPRVKKILEDRKAMAEGGQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLS--KG 623 (906)
T ss_pred hHHHHHHHHHHHHHhccccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcc--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred CcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCcc
Q 002419 696 AEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPE 775 (925)
Q Consensus 696 ~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~Gpe 775 (925)
+|.+.|+||+|||+|++|||||||+..|+.|||||||||||+||||++|||||+|++.||+++|+||++|||||+|||||
T Consensus 624 q~~f~v~nS~LSEeAvlgFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisSge~KW~r~sgLv~lLPHgyEGQGPE 703 (906)
T COG0567 624 QGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSGEQKWGRMSGLVMLLPHGYEGQGPE 703 (906)
T ss_pred cceEEEEechhhHHHHHhhhhhhhhcCCchhhhhhhhhcccccCCeeeeccccccHHHHHHHhcCceEEccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCC
Q 002419 776 HSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSN 855 (925)
Q Consensus 776 HSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~ 855 (925)
|||+|||||||||+|+ ||+||+||||+||||+||||+.+.+++|||+|+||+|||||.++|+
T Consensus 704 HSSaRlER~LQLcaE~------------------NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~ 765 (906)
T COG0567 704 HSSARLERFLQLCAEN------------------NMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSS 765 (906)
T ss_pred CccchhHHHHHhhHHh------------------CCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCc
Confidence 9999999999999994 9999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHH
Q 002419 856 LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALY 911 (925)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~ 911 (925)
++||++ +.|++||.|.+. .++ +|+|||||||||||||.+.+.
T Consensus 766 ~~el~~-----------~~F~~vl~d~~~--~~~-~v~rvvlcSGKvyydl~~~r~ 807 (906)
T COG0567 766 LEELTE-----------GTFQPVLEDIDE--LDP-KVKRVVLCSGKVYYDLLEQRE 807 (906)
T ss_pred hhhhch-----------hhhhhhhccccc--ccc-ceeeEEeeccchHHHHHHHHh
Confidence 999998 699999999743 233 399999999999999999983
No 4
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=4.7e-207 Score=1844.65 Aligned_cols=805 Identities=48% Similarity=0.778 Sum_probs=730.9
Q ss_pred ccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCC----C-CCCC--------C----C--C---h-hhHHHHHHHH
Q 002419 66 FLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQ----A-ATSP--------G----I--S---G-QTIQESMRLL 122 (925)
Q Consensus 66 ~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~~----~-~~~~--------~----~--~---~-~~~~~~~~~~ 122 (925)
||+|.|+.|||+||++|++||+|||++|+.||+++.+. . +..+ . . . . ....+++++.
T Consensus 1 fl~g~n~~yie~lY~~~~~dP~sv~~~w~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (929)
T TIGR00239 1 YLSGANQSYIEELYEDYLTDPDSVDASWRSTFDQLPGPGPAPDQFHSPTRSYFRRLAKDASRGSVTISDPDTNVSQVKVL 80 (929)
T ss_pred CCCCCCHHHHHHHHHHHHhChhcCCHHHHHHHHhCcccCCccccccCchhhhhcccccccccccccccchhhhHHHHHHH
Confidence 78999999999999999999999999999999998311 1 1000 0 0 0 0 1122578999
Q ss_pred HHHHHHHhcCccccccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCC-CCCcCHHHHHHHHHHHhcC
Q 002419 123 LLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSEN-RPVQTLRSILTRLEQAYCG 201 (925)
Q Consensus 123 ~li~ayr~~GH~~A~ldPL~~~~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~-~~~~tl~eii~~L~~~Ycg 201 (925)
+||+|||.+||+.|+||||++..+...++|+|++|||+++||++.|.++... +... ...+||+|||++|+++|||
T Consensus 81 ~LI~ayR~~GHl~A~lDPL~~~~~~~~~~l~~~~~gl~~~dl~~~~~~~~~~----~~~~~~~~~~l~eii~~L~~~YCg 156 (929)
T TIGR00239 81 QLIRAYRFRGHLHANLDPLGLKQQDKVPELDLSFYGLTEADLQETFNIGSFV----SGKDATMKLSNLELLQALKQTYCG 156 (929)
T ss_pred HHHHHHHHhcchheecCCCCCCCCCCCCccChhhcCCChHHhCceeeecccc----cCccccccCCHHHHHHHHHHHhcC
Confidence 9999999999999999999975566778999999999999999999876221 1112 2246999999999999999
Q ss_pred ccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHH
Q 002419 202 SIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDR 281 (925)
Q Consensus 202 ~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~ 281 (925)
+||+|||||.|+++|+||++|||+.....+|+|++++||++|++++.||+||++||+++||||+||+|++||+++++|+.
T Consensus 157 ~ig~E~~hi~~~~~r~Wl~~~iE~~~~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFslEG~eslip~l~~~i~~ 236 (929)
T TIGR00239 157 SIGAEYMHITSTEEKRWLQQRIESGERAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFSLEGLDALVPMLKEIIRH 236 (929)
T ss_pred cceeeeecCCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeecccHHHHHHHHHHHHHH
Confidence 99999999999999999999999754678999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCcccccc-ccCCCCCCCCcceeeeec
Q 002419 282 AADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLG-TSYDRPTRGGKRIHLSLV 360 (925)
Q Consensus 282 a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg-~s~~~~~~~g~~i~l~l~ 360 (925)
|++.||+|+|+||+||||+|+|+|++|||+++||+||+|+..+... +|+||||||+| ++.+..+ .|+.++++|+
T Consensus 237 ~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~----~g~gdvKyHlg~~~~~~~~-~~~~~~~~l~ 311 (929)
T TIGR00239 237 SVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLP----DGTGDVKYHMGRFSSDFTT-DGKLVHLALA 311 (929)
T ss_pred HHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCccc----CCCCCcCccCCCccccccc-CCCcceeeec
Confidence 9999999999999999999999999999999999999998765322 36899999999 7776555 4566999999
Q ss_pred cccCCcccccceeehhhhhhhhhcCC-CCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccccc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSND-MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT 439 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d-~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT 439 (925)
+||||||+++|+|+|+|+|+|+++++ ..+++.|+||+|||||++|||+||||||||.|++|.|||+||||+||||||||
T Consensus 312 ~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT 391 (929)
T TIGR00239 312 FNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTT 391 (929)
T ss_pred CCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEE
Confidence 99999999999999999999998764 45567999999999999789999999999999999999999999999999999
Q ss_pred CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHH
Q 002419 440 DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKII 519 (925)
Q Consensus 440 ~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i 519 (925)
++++++++.||+|+|++||+|++|||||||+||++|+++|++|||+|+||+|||++|||++|||++|+|++|+|+||+.|
T Consensus 392 ~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp~~~~~i 471 (929)
T TIGR00239 392 NPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQPLMYQKI 471 (929)
T ss_pred cHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHH
Q 002419 520 RSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEIL 599 (925)
Q Consensus 520 ~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l 599 (925)
++++||+.+|+++|+++|++|++++++|++++++++++|++.++..++. ... ...|.++.. ..+....+|+++.+.|
T Consensus 472 ~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~~~~t~v~~~~l 548 (929)
T TIGR00239 472 KKHPTPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREM-NTA-SFTWSPELN-HEWDEEYPNKVEMKRL 548 (929)
T ss_pred HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCc-ccc-ccccccccc-cccccCCCCCCCHHHH
Confidence 9899999999999999999999999999999999999999999875521 111 124655432 1222345899999999
Q ss_pred HHHHhhhhcCCCCCCcchhhHHHHHHH-HHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeec
Q 002419 600 KNVGKAITTLPENFKPHRGVKKVYELR-AQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQ 678 (925)
Q Consensus 600 ~~i~~~~~~~P~~f~~h~~l~~~~~~R-~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq 678 (925)
+.|+.+++++|++|++||+|+|++++| ++|.++++.+||++||++||+++|.+|++|||+||||+||||+|||||||||
T Consensus 549 ~~l~~~~~~~P~~f~~h~~~~k~~~~R~~~~~~g~~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq 628 (929)
T TIGR00239 549 QELAKRISEVPEGVEMHSRVAKIYFDRTKAMAAGEKLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQ 628 (929)
T ss_pred HHHHHHhccCCCCccccHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCccccccccccccc
Confidence 999999999999999999999999999 8888777779999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCc
Q 002419 679 ETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ 758 (925)
Q Consensus 679 ~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~ 758 (925)
+||..|.||++|. ++||++||+||||||+||+|||||||+.|++||||||+|||||+|+||++|||||+++++||+++
T Consensus 629 ~~g~~~~~~~~l~--~~~g~~rV~nsplSE~a~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~ 706 (929)
T TIGR00239 629 SNGSTYTPLQHLH--NGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQM 706 (929)
T ss_pred ccCceeecccchh--hhcCCeeEEcCCccHHHHHHHHHhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCc
Confidence 9999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcE
Q 002419 759 SGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPL 838 (925)
Q Consensus 759 ~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pl 838 (925)
+||||++||||+|+||+|||+|+|||||||+++ ||+||+||||+|||||||||+.++++|||
T Consensus 707 sglv~~~p~G~~g~g~~hsS~~~E~~lql~~~~------------------gl~Vv~pstpad~~~lLrrqa~r~~~~Pv 768 (929)
T TIGR00239 707 SGLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQ------------------NMQVCVPTTPAQVFHILRRQALRGMRRPL 768 (929)
T ss_pred cCeEEEecCcCCCCCchhhccCHHHHHHHhCCC------------------CCEEEecCCHHHHHHHHHHHHHhCCCCCE
Confidence 999999999999999999999999999999973 69999999999999999999999899999
Q ss_pred EEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCC--CCCCCCCccEEEEecchHHHHHHHHHHHh
Q 002419 839 VVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNE--HSDLEEGIRRLILCSGKVSSAVCVALYFF 913 (925)
Q Consensus 839 i~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~--~~~~~~~v~rvilcsGkvyydL~~~~~~~ 913 (925)
|||+||+|||++.++|+++|+.+ +.|+++|+|... ...++++|+|||+|||||||||.+++..-
T Consensus 769 i~~~~K~L~r~~~a~S~~~e~~~-----------~~f~~~i~~~~~~~~~~~~~~v~~vv~~sg~v~~~l~~~~~~~ 834 (929)
T TIGR00239 769 VVMSPKSLLRHPLAVSSLEELAE-----------GTFQPVIGEIEESGLSLDPEGVKRLVLCSGKVYYDLHEQRRKN 834 (929)
T ss_pred EEeccHhhhcCccccCccccCCC-----------CCcccccccccccccccCccCCcEEEEECchHHHHHHHHHHhc
Confidence 99999999999999999999986 779999988531 11356789999999999999999977543
No 5
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4.3e-206 Score=1844.66 Aligned_cols=803 Identities=54% Similarity=0.876 Sum_probs=740.8
Q ss_pred CCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccCC--C---------CCCCCCC--h--hhHHHHHHHHHHHHH
Q 002419 63 TDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVGQ--A---------ATSPGIS--G--QTIQESMRLLLLVRA 127 (925)
Q Consensus 63 ~~s~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~~--~---------~~~~~~~--~--~~~~~~~~~~~li~a 127 (925)
+.+|+++.|+.|||+||++|++||+||+++|+.||+++.+. . +...... . ....+++++.+||+|
T Consensus 10 ~~~~~~~~n~~yie~ly~~~~~dp~sV~~sw~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~a 89 (924)
T PRK09404 10 DSSFLFGANAAYIEELYEQYLKDPDSVDEEWRAFFDGLPGVAPDVAHSAVRESFRRLAKPARVSSAVSDPQVKVLQLINA 89 (924)
T ss_pred hcccCCCCCHHHHHHHHHHHhhChhhcCHHHHHHHHhccccccccccchhhhhhhhcccccccchhhhhHHHHHHHHHHH
Confidence 45999999999999999999999999999999999988311 0 0000000 0 122357899999999
Q ss_pred HHhcCccccccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCcccccc
Q 002419 128 YQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEY 207 (925)
Q Consensus 128 yr~~GH~~A~ldPL~~~~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L~~~Ycg~ig~E~ 207 (925)
||.+||+.|+||||++..+...++|+|++|||+++|||+.|.++... . +...+||+|||++|+++|||+||+||
T Consensus 90 yR~~GHl~A~lDPL~~~~~~~~~~L~~~~~gl~~~dl~~~~~~~~~~----~--~~~~~~l~eii~~L~~~Ycg~ig~E~ 163 (924)
T PRK09404 90 YRFRGHLAANLDPLGLWKRPDVPELDPAFYGLTEADLDRTFNTGSLA----L--GKETATLREIIEALKKTYCGSIGVEY 163 (924)
T ss_pred HHHhCchheecCCCCCccCCCCccCChhhcCCChHHcCCccccCccc----c--CCCCCcHHHHHHHHHHHhcccHhhee
Confidence 99999999999999975566778999999999999999999875211 1 33457999999999999999999999
Q ss_pred ccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCC
Q 002419 208 MHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGV 287 (925)
Q Consensus 208 ~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv 287 (925)
|||.|.++|+||++|||+... .+|+|+++++|++|+++|.||+||+++|+++||||++|||+++||++++++.|+++|+
T Consensus 164 ~hi~~~~er~Wl~~~iE~~~~-~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~~eG~Ea~i~gl~~li~~a~~lg~ 242 (924)
T PRK09404 164 MHISDPEERRWLQQRIESGRP-SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFSLEGGESLIPMLDEIIRRAGKLGV 242 (924)
T ss_pred ccCCCHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999997655 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcc
Q 002419 288 ESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLE 367 (925)
Q Consensus 288 ~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg 367 (925)
+|+|+||+||||+|+|+|++|+|+++||+||+|+...... .|+||||||+|++.++... |+.+|+++++||||||
T Consensus 243 ~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~----~~~GdvkyHlG~~~~~~g~-gg~mhi~l~~npShle 317 (924)
T PRK09404 243 KEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEV----LGSGDVKYHLGFSSDRETD-GGEVHLSLAFNPSHLE 317 (924)
T ss_pred CCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCC----CCCCCcccccCccccccCC-CCeeEeeccCCccccc
Confidence 9999999999999999999999999999999998731111 3579999999988766543 5679999999999999
Q ss_pred cccceeehhhhhhhhhcCC-CCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcC
Q 002419 368 AVDPVVIGKTRAKQYYSND-MDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRS 446 (925)
Q Consensus 368 ~~~PvA~G~A~A~q~~~~d-~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rs 446 (925)
+++|+|+|+|+|.|+++++ .++++.|+||+|||||++|||+||||||||.|++|.|||+||||+||||||||++.++++
T Consensus 318 av~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s 397 (924)
T PRK09404 318 IVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRS 397 (924)
T ss_pred cccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhcc
Confidence 9999999999999999876 566679999999999998899999999999999999999999999999999999999999
Q ss_pred cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHH
Q 002419 447 SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSL 526 (925)
Q Consensus 447 s~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi 526 (925)
+.||+|+|++||+|++||||+||+||++|+++|++|||+|+||+|||++|||++|||++|+|+||+|.||+.|++++||+
T Consensus 398 ~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~~~dpi 477 (924)
T PRK09404 398 TPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKKHPTTR 477 (924)
T ss_pred chhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhh
Q 002419 527 EIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAI 606 (925)
Q Consensus 527 ~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~ 606 (925)
.+|+++|+++|++|++++++|+++++++|++|+++|+++. +.+++...|..+..+. ....++|+|+.+.|+.+++++
T Consensus 478 ~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~~--~~~~~~~~~~~~~~~~-~~~~~~t~v~~~~l~~~~~~~ 554 (924)
T PRK09404 478 ELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEWR--PADWLAGDWSPYLGHE-WDDPVDTGVPLERLKELAEKL 554 (924)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--cccccccccccccccc-cccccCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998763 5567788898665432 233568999999999999999
Q ss_pred hcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceecc
Q 002419 607 TTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCP 686 (925)
Q Consensus 607 ~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~p 686 (925)
+++|++|++||+|+|++++|++|+.+++.|||++||+|||+|+|.+|++|||+||||+||||+|||||||||+||..|.|
T Consensus 555 ~~~P~~f~~h~~~~k~~~~R~~~~~~~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~ 634 (924)
T PRK09404 555 TTVPEGFKVHPKVKKILEDRREMAEGEKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIP 634 (924)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEecc
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcC
Q 002419 687 LDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLP 766 (925)
Q Consensus 687 L~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lP 766 (925)
+++|. ++||++||+||||||++|+|||||||+.|++||+|||+|||||+|+||++|||||++++.||++++||||++|
T Consensus 635 ~~~l~--~~~g~~rV~nsplsE~~~~G~~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p 712 (924)
T PRK09404 635 LNHLS--EGQASFEVYDSPLSEEAVLGFEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLP 712 (924)
T ss_pred ccchh--hhcCCceEecCcchHHHHHHHHHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEec
Confidence 99999 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccc
Q 002419 767 HGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNL 846 (925)
Q Consensus 767 hG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~L 846 (925)
|||+|+||+|||+|+|||||+|+++ ||+||+||||+|||||||||+.+++|||||||+||+|
T Consensus 713 ~G~~g~g~~hsS~~~E~~l~~~~~~------------------gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L 774 (924)
T PRK09404 713 HGYEGQGPEHSSARLERFLQLCAED------------------NMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSL 774 (924)
T ss_pred CcCCCCChhhhccCHHHHHHhCCCC------------------CCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHH
Confidence 9999999999999999999999973 6999999999999999999998888999999999999
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHh
Q 002419 847 LRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFF 913 (925)
Q Consensus 847 lr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~ 913 (925)
||++.++|+++||.+ +.|++||+|+. ..++++|+||||||||+||+|+++++..
T Consensus 775 ~r~~~~~s~~~e~~~-----------~~f~~vi~~~~--~~~~~~v~r~iv~~Gk~~~~~~~a~~~~ 828 (924)
T PRK09404 775 LRHPLAVSSLEELAE-----------GSFQPVIGDID--ELDPKKVKRVVLCSGKVYYDLLEARRKR 828 (924)
T ss_pred hCCCCCCCCHHHcCC-----------CCceeeccccc--ccCccceeEEEEEcCHHHHHHHHHHHhC
Confidence 999999999999986 66999999975 2467899999999999999999998854
No 6
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-189 Score=1552.81 Aligned_cols=756 Identities=43% Similarity=0.751 Sum_probs=707.7
Q ss_pred HHHHHHHHHHHHHhcCccccccCCCCCC-CCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHH
Q 002419 117 ESMRLLLLVRAYQVNGHMKAKLDPLGLE-EREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRL 195 (925)
Q Consensus 117 ~~~~~~~li~ayr~~GH~~A~ldPL~~~-~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L 195 (925)
.+..+.+||+|||.|||+.|++|||++. +-+...+|+|..||+--. .++++.++...+|.|+.+.|
T Consensus 52 ~~a~~~rlv~afr~hGhk~A~vnPl~~l~~v~e~qeL~pa~yG~~~t-------------~gLl~~~k~~~sl~~l~~~L 118 (913)
T KOG0451|consen 52 SQANVYRLVEAFRQHGHKLAAVNPLSILTSVQELQELSPAFYGLQRT-------------DGLLSGPKVAHSLAQLEQLL 118 (913)
T ss_pred ccccHHHHHHHHHHhcchhhccCchHhhhccHHHHHhCHHhhcchhh-------------hhhhcCccccccHHHHHHHH
Confidence 3567899999999999999999999953 333456799999997422 13555566678999999999
Q ss_pred HHHhcCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHH
Q 002419 196 EQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGM 275 (925)
Q Consensus 196 ~~~Ycg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl 275 (925)
+.||||++.+|||||+|.|||+||.+++|+.....|.+|++++|-+.|+++..||+||++||++-||||.||.|++...+
T Consensus 119 ~~IYCG~tsiEfs~v~~~eEr~W~a~nFE~l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYGgEGAESM~aFF 198 (913)
T KOG0451|consen 119 KDIYCGSTSIEFSYVEDIEEREWLARNFETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYGGEGAESMLAFF 198 (913)
T ss_pred HhheeCcchhhhhhhccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhccccHHHHHHHH
Confidence 99999999999999999999999999999987788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcce
Q 002419 276 KEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRI 355 (925)
Q Consensus 276 ~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i 355 (925)
-++++.++..+++++||||+||||+|+|+-+|..|+..||+++.|.+..+..- ...|||-.|+-.|.+ -...++.+
T Consensus 199 ~eLl~~sa~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~---~A~gDVlSHl~sS~d-ykg~~~~l 274 (913)
T KOG0451|consen 199 WELLRDSAQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDI---EAMGDVLSHLHSSED-YKGLGKKL 274 (913)
T ss_pred HHHHHHHHhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhh---hHHHHHHHHhhhhhh-hcccCCce
Confidence 99999999999999999999999999999999999999999999999887642 356899999975555 33456789
Q ss_pred eeeeccccCCcccccceeehhhhhhhhhcCCC---------CCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccE
Q 002419 356 HLSLVANPSHLEAVDPVVIGKTRAKQYYSNDM---------DRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGT 426 (925)
Q Consensus 356 ~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~---------~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGv 426 (925)
|++|+||||||++++|||+|+++++|...++. .++.++.|.+||||||.|||+++|++||+++|.|++||+
T Consensus 275 hvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGs 354 (913)
T KOG0451|consen 275 HVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGS 354 (913)
T ss_pred EEEecCChhhhhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecce
Confidence 99999999999999999999999999866542 355789999999999999999999999999999999999
Q ss_pred EEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCC
Q 002419 427 IHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEID 506 (925)
Q Consensus 427 I~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D 506 (925)
||+|+|||+|||||.+..||+.||+|+||++++|++||||||||+|.+|+++|++|+|+|+||||||++|||++||||.|
T Consensus 355 vHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHneld 434 (913)
T KOG0451|consen 355 VHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELD 434 (913)
T ss_pred EEEEecccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccc
Q 002419 507 EPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQL 586 (925)
Q Consensus 507 dp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~ 586 (925)
||.||+|.||+.+....++.+.|.++|+++|++|+++++++++++.+.|.+.++.+..+.|.+ ..++..|.++..++..
T Consensus 435 dp~ftspvmyk~v~aReSvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~-~~~~~~W~gf~qapk~ 513 (913)
T KOG0451|consen 435 DPTFTSPVMYKEVEARESVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP-SYFEKQWTGFQQAPKE 513 (913)
T ss_pred CccccChhHHHHHHhhhcccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc-hhhHHhhhhhccChhh
Confidence 999999999999999999999999999999999999999999999999999999999887654 3478899999877667
Q ss_pred cccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHH-HHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCC
Q 002419 587 SRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKV-YELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVER 665 (925)
Q Consensus 587 ~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~-~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r 665 (925)
.+.|+|||+.+.|+.||...+++|++|++|+.|-|. ++.|.+.++.|.+|||+|||+|||+|||.+|.+||||||||+|
T Consensus 514 it~WdTGv~~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGR 593 (913)
T KOG0451|consen 514 ITYWDTGVDYDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGR 593 (913)
T ss_pred hcccccCcchHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCc
Confidence 789999999999999999999999999999999885 8999999999999999999999999999999999999999999
Q ss_pred cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHH
Q 002419 666 GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFD 745 (925)
Q Consensus 666 GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~id 745 (925)
|||+||||+++||+|.+.|+||+++.+ ...|..+|.||+|||.||||||||+|+++|+.|+|||||||||+||||+|||
T Consensus 594 GTFshRHAM~VdQ~Td~~~IPLN~m~~-~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiD 672 (913)
T KOG0451|consen 594 GTFSHRHAMLVDQQTDEMFIPLNSMEG-GQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIID 672 (913)
T ss_pred ccccccceeeeeccccceeeeccccCC-CcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEe
Confidence 999999999999999999999999985 5568999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhCCcCCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHH
Q 002419 746 QFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHV 825 (925)
Q Consensus 746 q~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hl 825 (925)
.||+++|+||..+++|||+|||||+|+|||||||||||||||||+.|.. ++| +.+||.||+||||||||||
T Consensus 673 TFi~sgE~KWl~ssglvmLLPHGyDGAgpeHSSCRiERFLQlCDS~E~~---vDG------d~VNm~vvnPTTpAQYfHl 743 (913)
T KOG0451|consen 673 TFIVSGETKWLESSGLVMLLPHGYDGAGPEHSSCRIERFLQLCDSKETS---VDG------DSVNMHVVNPTTPAQYFHL 743 (913)
T ss_pred eeecccchhhhhhCCeEEEccCCcCCCCCccchhhHHHHHHHhcccccc---CCC------cceeEEEeCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999987664 444 6789999999999999999
Q ss_pred HHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHH
Q 002419 826 LRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSA 905 (925)
Q Consensus 826 Lr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyyd 905 (925)
||||+.++|||||||..||.|||+|.++|+++||. |||.|++||+|. +.+|++||+|||||||+||.
T Consensus 744 LRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~----------PGTtf~nVigd~---~~~p~kvkkvifcSGKH~y~ 810 (913)
T KOG0451|consen 744 LRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQ----------PGTTFHNVIGDT---IAKPEKVKKVIFCSGKHYYT 810 (913)
T ss_pred HHHHHHHhccCceEEechHHHhhCcchhhhHhhcC----------CCcccccccccc---ccChhHheEEEEecCcchhh
Confidence 99999999999999999999999999999999998 799999999997 35899999999999999999
Q ss_pred HHHHHHHh
Q 002419 906 VCVALYFF 913 (925)
Q Consensus 906 L~~~~~~~ 913 (925)
|.++++..
T Consensus 811 l~k~Re~r 818 (913)
T KOG0451|consen 811 LAKEREKR 818 (913)
T ss_pred HHHHHHhc
Confidence 99999864
No 7
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=2.6e-76 Score=631.17 Aligned_cols=265 Identities=69% Similarity=1.101 Sum_probs=250.9
Q ss_pred HHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCC
Q 002419 249 FENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEV 328 (925)
Q Consensus 249 fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G 328 (925)
||+||++||+++||||++|+|+++|+++.+|+.+++.|++|+++||+||||+|+|+|++|+|+++||+||+|+.+.+..
T Consensus 1 ~e~f~~~~f~~~krfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~- 79 (265)
T cd02016 1 FEQFLATKFPGQKRFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPED- 79 (265)
T ss_pred ChhhHHHhcCCCeEEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCC-
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999998873221
Q ss_pred CcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcch
Q 002419 329 GLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV 408 (925)
Q Consensus 329 ~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~ 408 (925)
..++||||||+|++.++.+.+|+.|+++|++||||||+++|+|+|+|+|.|+++++...++.|+||+|||||++|||+
T Consensus 80 --~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 80 --DEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred --CCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 135799999999887777776888999999999999999999999999999998655556799999999999888999
Q ss_pred HHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCC
Q 002419 409 VYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHS 488 (925)
Q Consensus 409 v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~ 488 (925)
|||+||||+||+|.|||+||||+||||||||++++++++.+++|+|++||+|++||||+||+||++|+++|++|||+++|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeecCCCCCCCCCCCcCHHHH
Q 002419 489 DVVVDLVCYRRFGHNEIDEPSFTQPKMY 516 (925)
Q Consensus 489 PvlIe~~tYR~~GHne~Ddp~ytqp~ey 516 (925)
|+|||++|||++|||++|+|+||||.||
T Consensus 238 p~lIe~~tYR~~GHse~D~p~~t~p~my 265 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEPSFTQPLMY 265 (265)
T ss_pred CEEEEEEEecCCCCCCcCCccccCCCcC
Confidence 9999999999999999999999999997
No 8
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-66 Score=569.48 Aligned_cols=315 Identities=19% Similarity=0.289 Sum_probs=290.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
..+++++++++|+.|+++|.||+++..+++++|..|+ .||||+++|+..+|++. +||++ ++||+|+++|+
T Consensus 22 ~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~-----~D~i~-~~YR~h~~~l~ 95 (358)
T COG1071 22 AALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPG-----EDWIF-PTYRDHGHLLA 95 (358)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCC-----CCEee-cccCcccccee
Confidence 3689999999999999999999999999999998764 99999999999999851 59999 69999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |+|+.+||+|++|+.+++|+|+ +|+ ||++ +++.+++++ ++++|+|+|+|+|+|+|.|+++
T Consensus 96 ~--G~~~~~~~a~~~G~~~g~~kGr--~~~----~h~~-~~~~~~~~~----------~~iVg~Q~~~AaG~A~a~k~~~ 156 (358)
T COG1071 96 R--GVPLKEIMAELLGKATGPCKGR--GGS----MHYS-DKEKGFLGG----------SGIVGTQIPLAAGAALALKYRG 156 (358)
T ss_pred c--CCCHHHHHHHHhccccCCCCCC--CCc----cccc-ccccccCCC----------CceecccccHHHHHHHHHHHhC
Confidence 9 9999999999999999999863 666 9996 666555554 4669999999999999999988
Q ss_pred CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccE
Q 002419 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (925)
Q Consensus 385 ~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~ 461 (925)
++ +.|++|++||||++ ||.|||+|||| +|| +||+|+|||||||++...+.....++.+|.+||||+
T Consensus 157 ~~----~~Va~~~~GDGat~-qG~FhEalN~A~v~klP------vvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipg 225 (358)
T COG1071 157 TK----DGVAVAFFGDGATN-QGDFHEALNFAAVWKLP------VVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPG 225 (358)
T ss_pred CC----CcEEEEEecCCccc-cchHHHHHHHHHHhcCC------EEEEEecCCceeecchhhcccchhHHhhhhccCCCe
Confidence 54 24999999999999 99999999999 999 999999999999988776777777888999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-CCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Q 002419 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (925)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp-~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (925)
+.|||+|++||+++++.|++|+|++++|+|||++|||..|||++|+| .||+++|.++|+ ++|||.+++++|++.|++|
T Consensus 226 v~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~s 304 (358)
T COG1071 226 VRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILS 304 (358)
T ss_pred EEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999996 599999999996 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002419 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (925)
Q Consensus 541 ~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~ 580 (925)
++++++|+++++++|++|+++|++.+ |++.+.++++|.++
T Consensus 305 ee~~~~i~~e~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~ 345 (358)
T COG1071 305 EEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEG 345 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhhhcccccC
Confidence 99999999999999999999999987 88888899998765
No 9
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=2.5e-62 Score=546.92 Aligned_cols=310 Identities=20% Similarity=0.339 Sum_probs=284.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
..+++|+++++|+.|+++|.||+.+.++|.++|..| ..||||+++|+..+|++ +|+++ ++||+|+++|+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~------~D~~~-~~yR~hg~~la 97 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITK------EDAII-TAYRDHCTHLG 97 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCC------CCEEE-echhhHHHHHH
Confidence 468999999999999999999999999999998754 49999999999999976 79999 69999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |.++.++|+|++|+.+|+++|+ ||| +|++ +++.+ +++.+|+||+++|+|+|+|+|.|+++
T Consensus 98 ~--G~~~~~~~ae~~g~~~g~~~Gr--ggs----mH~~-~~~~~----------~~~~~~~vG~~~p~A~G~A~A~k~~~ 158 (362)
T PLN02269 98 R--GGTVLEVFAELMGRKDGCSRGK--GGS----MHFY-KKDAN----------FYGGHGIVGAQVPLGAGLAFAQKYNK 158 (362)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCc----cccc-chhcC----------ccccCchhhccccHHHHHHHHHHHhC
Confidence 9 9999999999999999998864 677 9996 55544 45566889999999999999999987
Q ss_pred CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccE
Q 002419 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (925)
Q Consensus 385 ~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~ 461 (925)
.+ .+++|+||||+++ ||.|||+||+| +|| +||||+||+||+||+...+.....+++ +++++|+
T Consensus 159 ~~-----~v~v~~~GDGa~~-eG~~~Ealn~A~~~~lP------vvfvveNN~~aist~~~~~~~~~~~~~--~~~~~p~ 224 (362)
T PLN02269 159 EE-----NVAFALYGDGAAN-QGQLFEALNIAALWDLP------VIFVCENNHYGMGTAEWRAAKSPAYYK--RGDYVPG 224 (362)
T ss_pred CC-----CeEEEEECCCCcc-cCHHHHHHHHhhccCcC------EEEEEeCCCEeccCchhhhccchHHHH--hhcCCCe
Confidence 65 8999999999987 99999999999 999 999999999999998776666666664 4578999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-CCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Q 002419 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (925)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp-~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (925)
++|||+|+++|++|++.|++++|+ +||+|||++|||++|||++|++ .||+|+|++.|++++||+.+|+++|+++|++|
T Consensus 225 ~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~t 303 (362)
T PLN02269 225 LKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELAT 303 (362)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999 9999999999999999999987 79999999999878999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002419 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSG 579 (925)
Q Consensus 541 ~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 579 (925)
+++++++++++++++++++++|++.| |++.+.++++|+.
T Consensus 304 e~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~ 343 (362)
T PLN02269 304 EAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVYVK 343 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 99999999999999999999999988 8888899999975
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=9.5e-63 Score=539.76 Aligned_cols=290 Identities=27% Similarity=0.403 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc----cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHH
Q 002419 241 DRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFS 316 (925)
Q Consensus 241 ~~m~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifa 316 (925)
++|++.|.||+.+..+|..+|++|+ .|||++.+++..++++ +|+++ ++||+|+++|++ |.++.++|+
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~------~D~v~-~~yR~~~~~la~--g~~~~~~~~ 71 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRP------GDWVF-PYYRDHGHALAR--GIDLEEIFA 71 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCT------TSEEE-ECSTTHHHHHHT--TT-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccC------CCEEE-ecccchhhhhhc--cccccchhH
Confidence 3678888888889999999998875 8999999999998876 79999 589999999999 999999999
Q ss_pred HhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEE
Q 002419 317 EFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVL 396 (925)
Q Consensus 317 Ef~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~ 396 (925)
|++|+..+. +|++. +.|.+ ++. +++.+.+|++|+++|+|+|.|+|.|+++.+ .|+||
T Consensus 72 e~~g~~~g~------~g~~~-~~~~~-~~~----------~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~-----~v~v~ 128 (300)
T PF00676_consen 72 ELLGKAKGH------GGGRH-PLHFS-DKG----------LNILGASSPVGAQVPIAAGVALAIKYRGKD-----GVVVC 128 (300)
T ss_dssp HHHTBTTST------TTTGC-TTEEE-BTT----------TTBEEEESSTTTHHHHHHHHHHHHHHTTSS-----EEEEE
T ss_pred HhcCcccCC------CCCcc-ccccc-ccc----------ceeeeccccccccCccccchhHhhhhcCCc-----eeEEE
Confidence 999998443 45544 56664 332 246778899999999999999999987765 99999
Q ss_pred EEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHH
Q 002419 397 IHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVA 473 (925)
Q Consensus 397 ~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~ 473 (925)
+|||||++ ||.|||+|||| +|| +||||+||||||||+.++++++.+++++|++||+|+++|||+|+++|+
T Consensus 129 ~~GDga~~-qG~~~EalN~A~~~~lP------vifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~ 201 (300)
T PF00676_consen 129 FFGDGATS-QGDFHEALNLAALWKLP------VIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVY 201 (300)
T ss_dssp EEETGGGG-SHHHHHHHHHHHHTTTS------EEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHH
T ss_pred EecCcccc-cCccHHHHHHHhhccCC------eEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHH
Confidence 99999987 99999999999 999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcC-HHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002419 474 HVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQ-PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVN 552 (925)
Q Consensus 474 ~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytq-p~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~ 552 (925)
+|+++|++|+|+++||+|||++|||++|||++|+|.+++ |+||+.|++++||+.+|+++|+++|++|++++++|+++++
T Consensus 202 ~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~ 281 (300)
T PF00676_consen 202 EAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIK 281 (300)
T ss_dssp HHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998655 9999999989999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC-CCc
Q 002419 553 RILSEEFVASKDYV-PNR 569 (925)
Q Consensus 553 ~~l~~a~~~A~~~~-p~~ 569 (925)
++|++++++|++.| |++
T Consensus 282 ~~v~~a~~~a~~~p~p~~ 299 (300)
T PF00676_consen 282 AEVEEAVEFAEASPEPDP 299 (300)
T ss_dssp HHHHHHHHHHHHSHBC-G
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 99999999999876 543
No 11
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=3.8e-61 Score=547.01 Aligned_cols=318 Identities=21% Similarity=0.337 Sum_probs=291.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
+.+++|+++++|++|+++|.||+++.++|+++|++|+ .|||++++|+..+|++ +|++++ +||+|+++|+
T Consensus 81 ~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~------~D~v~~-~yR~h~~~La 153 (433)
T PLN02374 81 LLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------DDSVVS-TYRDHVHALS 153 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCC------CCEEEc-cCcChHHhhh
Confidence 5789999999999999999999999999999999875 9999999999999986 799995 9999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |+++.+||+|++|+.++.++|+ ||+ ||++ +.+.+++++ .++||.++|+|+|+|+|.|+++
T Consensus 154 ~--G~~~~~~mael~Gk~~g~~~Gr--ggs----mH~~-~~~~~~~g~----------~g~lG~~lP~AvGaA~A~k~~~ 214 (433)
T PLN02374 154 K--GVPARAVMSELFGKATGCCRGQ--GGS----MHMF-SKEHNLLGG----------FAFIGEGIPVATGAAFSSKYRR 214 (433)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCc----CccC-chhhCCCCC----------ceeccCchhHHHHHHHHHHHhh
Confidence 8 9999999999999999988763 665 9995 666665544 4679999999999999999876
Q ss_pred CCC--CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCc
Q 002419 385 NDM--DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDA 459 (925)
Q Consensus 385 ~d~--~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~gi 459 (925)
... ...+.++||++|||+++ +|.|||+||+| +|| +||||+||+|+++|+...+++.++++++|++||+
T Consensus 215 ~~~~~~~~~~vvv~~~GDGa~~-eG~f~EaLn~A~~~~LP------vIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~ 287 (433)
T PLN02374 215 EVLKEESCDDVTLAFFGDGTCN-NGQFFECLNMAALWKLP------IVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGM 287 (433)
T ss_pred ccccccCCCCEEEEEECCCccc-cChHHHHHHHHHHhCCC------EEEEEeCCCEeecceeeeccCCCCHHHHHHhcCC
Confidence 411 12347999999999998 99999999999 999 9999999999999987777777889999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCC
Q 002419 460 PIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV 539 (925)
Q Consensus 460 P~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~ 539 (925)
|+++|||+|+++|+++++.|++++|++++|+|||++|||++|||++|++.||+|+|++.|+ .+||+.+|+++|+++|++
T Consensus 288 ~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~ 366 (433)
T PLN02374 288 PGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYA-ARDPIAALKKYLIENGLA 366 (433)
T ss_pred cEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCCccccCCHHHHHHHH-cCCcHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 689999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002419 540 TQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (925)
Q Consensus 540 t~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~ 580 (925)
|++++++|+++++++|++++++|++.+ |++.++++++|++.
T Consensus 367 te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~ 408 (433)
T PLN02374 367 TEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADP 408 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCC
Confidence 999999999999999999999998877 78889999999753
No 12
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=7.1e-61 Score=528.31 Aligned_cols=306 Identities=20% Similarity=0.310 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcC
Q 002419 233 RQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVR 308 (925)
Q Consensus 233 ~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg 308 (925)
+|+++++|+.|+++|.||+.+.++++++|..| ..|||++++|++.+|++ +|+++ ++||+|+.+|++ |
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~------~D~~~-~~yR~~~~~la~--G 71 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKP------DDYVI-TSYRDHGHALAR--G 71 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCC------CCEEE-echhhHHHHHHc--C
Confidence 37889999999999999999999999999754 49999999999999976 79999 699999999999 9
Q ss_pred CCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCC
Q 002419 309 KPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMD 388 (925)
Q Consensus 309 ~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~ 388 (925)
.|+.++|+|++|+.++.++|+ +|+ +|++ +++.+ +++..+++|.++|+|+|+|+|.|+++.+
T Consensus 72 ~~~~~~~~~~~g~~~g~~~Gr--~g~----~h~~-~~~~~----------~~~~~g~~G~~lp~AiGaa~A~~~~~~~-- 132 (315)
T TIGR03182 72 VPPKEVMAELTGRATGCSKGK--GGS----MHMF-DREKN----------FYGGHGIVGAQVPLATGLAFANKYRGND-- 132 (315)
T ss_pred CCHHHHHHHHcCCCCCCCCCC--CCC----CCcC-chhhC----------cccCcCcccccccHHHHHHHHHHHhCCC--
Confidence 999999999999999988763 666 8996 55544 4555688999999999999999987654
Q ss_pred CCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEe
Q 002419 389 RTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVN 465 (925)
Q Consensus 389 ~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~Vd 465 (925)
.++||++|||+++ +|.|||+||+| +|| +||||+||+||++|+...+++.++++++|++||+|+++||
T Consensus 133 ---~~vv~~~GDGa~~-~g~~~ealn~A~~~~lP------vi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vd 202 (315)
T TIGR03182 133 ---NVTACFFGDGAAN-QGQFYESFNMAALWKLP------VIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVD 202 (315)
T ss_pred ---CEEEEEeCCCccc-ccHHHHHHHHhhccCcC------EEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEEC
Confidence 8999999999997 99999999999 999 9999999999999998877778899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH
Q 002419 466 GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDIN 545 (925)
Q Consensus 466 G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~ 545 (925)
|+|+++|+++++.|++++|++++|+|||++|||++|||++|++.||+|+||+.|+ .+||+.+|+++|+++|++|+++++
T Consensus 203 g~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~ 281 (315)
T TIGR03182 203 GMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELK 281 (315)
T ss_pred CCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCccchhhhhc
Q 002419 546 KIQEKVNRILSEEFVASKDYV-PNRRDWLSAYW 577 (925)
Q Consensus 546 ~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w 577 (925)
+++++++++++++++.|++.| |++.+.++++|
T Consensus 282 ~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy 314 (315)
T TIGR03182 282 EIDKEVRAEVEEAVEFAENSPEPPVEELYTDVY 314 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 999999999999999999987 78888888776
No 13
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=5.1e-60 Score=503.80 Aligned_cols=309 Identities=19% Similarity=0.306 Sum_probs=289.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
..+++|+.+.+|+.|+++|.||..+.++|...|++|+ .||||+.+|+..+|+. .|.|| .+||+|+..+.
T Consensus 54 ~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~------~D~iI-tsYR~Hg~~~~ 126 (394)
T KOG0225|consen 54 VELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITK------SDSII-TSYRCHGWTYL 126 (394)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccC------CCceE-EEeeeeeEEee
Confidence 4689999999999999999999999999999999996 9999999999999986 68888 59999999997
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |.++.+||+|++|+..|+++|+ ||| |||- ++ +|+||++| +|+|+|+++|+|+|.|+++
T Consensus 127 ~--G~S~~~v~aEL~Gr~~Gc~kGK--GGS----MHmy-~k--~FyGGnGI----------VGAQiPLGaGia~A~kY~~ 185 (394)
T KOG0225|consen 127 R--GVSVREVLAELMGRQAGCSKGK--GGS----MHMY-AK--NFYGGNGI----------VGAQIPLGAGIAFAQKYNR 185 (394)
T ss_pred c--CccHHHHHHHHhccccccccCC--Ccc----eeee-cc--cccCccce----------eccCCCccccHHHHHHhcc
Confidence 7 9999999999999999999975 899 9994 44 49999988 9999999999999999988
Q ss_pred CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccE
Q 002419 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (925)
Q Consensus 385 ~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~ 461 (925)
++ .|++.+.||||.+ ||.++|++||| +|| +||||+||.||+.|+..++.+++....++ .| ||+
T Consensus 186 ~~-----~v~~alYGDGAaN-QGQ~fEa~NMA~LW~LP------~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPG 251 (394)
T KOG0225|consen 186 ED-----AVCFALYGDGAAN-QGQVFEAFNMAALWKLP------VIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPG 251 (394)
T ss_pred CC-----ceEEEEecccccc-chhHHHHhhHHHHhCCC------EEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCc
Confidence 77 8999999999999 99999999999 999 99999999999999998888888888887 45 999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCC-CCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Q 002419 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDE-PSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (925)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Dd-p~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (925)
++|||+|+.+|..|++.|++|+++++||+++|+.|||.+|||.+|+ .+||..+|.++.+.++|||..++++|++.++.|
T Consensus 252 l~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~lat 331 (394)
T KOG0225|consen 252 LKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLAT 331 (394)
T ss_pred eEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999998 469999999999989999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002419 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSG 579 (925)
Q Consensus 541 ~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 579 (925)
++|+++|+++++++|++++++|++.+ |.+.+++.++|..
T Consensus 332 e~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dvy~~ 371 (394)
T KOG0225|consen 332 EEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDVYVK 371 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhhcc
Confidence 99999999999999999999999877 6777788888854
No 14
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=8e-59 Score=516.45 Aligned_cols=316 Identities=20% Similarity=0.278 Sum_probs=288.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
..+|+|+++++|+.|+++|.||+.+.++|+++|..| ..|||++++|++.+|++ +|+++ ++||+|+++|+
T Consensus 15 ~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~------~D~~~-~~yR~~~~~la 87 (341)
T CHL00149 15 NNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAE------TDYVC-STYRDHVHALS 87 (341)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCC------CCEEE-cccccHHHHHH
Confidence 458999999999999999999999999999999754 49999999999999976 79999 69999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |.|+.++|+|++|+.+|+++|+ ||| +|++ +.+.++. +..+++|.++|+|+|+|+|.++++
T Consensus 88 ~--G~~~~~~~ae~~g~~~g~~~Gr--~gs----~H~~-~~~~~~~----------~~~g~lG~~lp~AvGaa~A~k~~~ 148 (341)
T CHL00149 88 K--GVPPKNVMAELFGKETGCSRGR--GGS----MHIF-SAPHNFL----------GGFAFIGEGIPIALGAAFQSIYRQ 148 (341)
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCC----cccc-chhcCcc----------CCChhhhccHHHHHHHHHHHHHhc
Confidence 9 9999999999999999988763 666 9996 5554443 445789999999999999998876
Q ss_pred CC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCc
Q 002419 385 ND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDA 459 (925)
Q Consensus 385 ~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~gi 459 (925)
.. ....+.++||++|||+++ +|.|||+||+| +|| +||||+||+|+++|+.+.+...++++++|++||+
T Consensus 149 ~~~~~~~~~~vvv~~~GDGa~~-~G~~~Ealn~A~~~~LP------vifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~ 221 (341)
T CHL00149 149 QVLKEVQPLRVTACFFGDGTTN-NGQFFECLNMAVLWKLP------IIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGL 221 (341)
T ss_pred cccccCCCCCEEEEEeCCchhh-hcHHHHHHHHHhhcCCC------EEEEEEeCCeeeecchhheeCCccHHHHHHhCCC
Confidence 31 011248999999999998 99999999999 999 9999999999999988777777889999999999
Q ss_pred cEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCC
Q 002419 460 PIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHV 539 (925)
Q Consensus 460 P~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~ 539 (925)
|+++|||+|+++|+++++.|++++|++++|+|||+.|||++||+++|++.||+++|.+.|+ ++||+.+|+++|+++|++
T Consensus 222 ~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIev~tyR~~gHs~~D~~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~ 300 (341)
T CHL00149 222 PGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEALTYRFRGHSLADPDELRSKQEKEAWV-ARDPIKKLKSYIIDNELA 300 (341)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEEecCCCcCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999996 689999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhcc
Q 002419 540 TQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWS 578 (925)
Q Consensus 540 t~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~ 578 (925)
|+++++++++++++++++++++|++.| |++.+.++++|+
T Consensus 301 ~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 340 (341)
T CHL00149 301 SQKELNKIQREVKIEIEQAVQFAISSPEPNISDLKKYLFA 340 (341)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccc
Confidence 999999999999999999999999987 888888888874
No 15
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=4e-56 Score=486.17 Aligned_cols=285 Identities=22% Similarity=0.312 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHH
Q 002419 239 ILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQI 314 (925)
Q Consensus 239 iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~i 314 (925)
+|+.|+++|.||+.+.++++++|..+ ..|||++++|+..+|++ +|+++ ++||+|+++|++ |.|+.+|
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~------~D~~~-~~yR~~~~~la~--G~~~~~~ 71 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRP------GDWVF-PTYRDHGHALAR--GVDLKEM 71 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCC------CCEEE-ecchhHHHHHHc--CCCHHHH
Confidence 59999999999999999999999877 59999999999999976 79999 599999999998 9999999
Q ss_pred HHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEE
Q 002419 315 FSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMA 394 (925)
Q Consensus 315 faEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~ 394 (925)
|+|++|+.+++++|+ +|+ +|++ +++ +++.+.++++|+++|+|+|+|+|.|+.+.+ .++
T Consensus 72 ~~e~~g~~~g~~~G~--~g~----~h~~-~~~----------~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~-----~~v 129 (293)
T cd02000 72 LAELFGKETGPCKGR--GGS----MHIG-DKE----------KNFFGGNGIVGGQVPLAAGAALALKYRGED-----RVA 129 (293)
T ss_pred HHHHcCCCCCCCCCC--CCC----CCCC-chh----------cCccccccccccchhHHHHHHHHHHHhCCC-----CEE
Confidence 999999999998763 555 9997 444 345667799999999999999999987655 899
Q ss_pred EEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 395 VLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 395 v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
||++|||+++ +|.|+|+||+| +|| +||||+||+||++|+...+.+.++++++|++||+|+++|||+|+++
T Consensus 130 v~~~GDGa~~-~g~~~E~l~~A~~~~lP------vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~ 202 (293)
T cd02000 130 VCFFGDGATN-EGDFHEALNFAALWKLP------VIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLA 202 (293)
T ss_pred EEEeCCCccc-cchHHHHHHHHHhhCCC------EEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHH
Confidence 9999999997 99999999999 999 9999999999999988777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-CcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEK 550 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e 550 (925)
|+.+++.|++++|++++|+|||++|||.+|||++|||. ||+|+|++.|+ ++||+.+|+++|+++|++|++++++++++
T Consensus 203 v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~ 281 (293)
T cd02000 203 VYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAE 281 (293)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998885 89999999985 79999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 002419 551 VNRILSEEFVAS 562 (925)
Q Consensus 551 ~~~~l~~a~~~A 562 (925)
+++++++++++|
T Consensus 282 ~~~~v~~a~~~a 293 (293)
T cd02000 282 VKAEVEEAVEFA 293 (293)
T ss_pred HHHHHHHHHHhC
Confidence 999999998865
No 16
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=7.2e-54 Score=477.28 Aligned_cols=303 Identities=19% Similarity=0.223 Sum_probs=273.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
+.+|+|+++++|+.|+++|.||+.+..+|.++|. | ..|||++.+|++.+|++ +|+++ ++||+|+++|+
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~------~D~~~-~~yR~h~~~l~ 90 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRK------DDWVF-PSYRDHAAMLA 90 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCC------CCEEE-cchhhHHHHHH
Confidence 4689999999999999999999999999999886 4 49999999999999976 79999 59999999999
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |.++.++|+|++|+.+|. ++ +++.+ +++..|++|+++|.|+|+|+|.++.+
T Consensus 91 ~--G~~~~~~~ae~~g~~~g~--------------~~--~~~~~----------~~g~~~~vG~~lp~AiGaAla~k~~~ 142 (341)
T TIGR03181 91 R--GVPLVEILLYWRGDERGS--------------WD--PEGVN----------ILPPNIPIGTQYLHAAGVAYALKLRG 142 (341)
T ss_pred c--CCCHHHHHHHhcCcCcCC--------------CC--chhcC----------ccCCCchHhcchhHHHhHHHHHHhhC
Confidence 9 999999999999986432 11 22223 34445789999999999999999877
Q ss_pred CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccE
Q 002419 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (925)
Q Consensus 385 ~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~ 461 (925)
.+ .++||++||||++ +|.++|+||+| +|| +||||+||+|+++|+.......++++++|++||+|+
T Consensus 143 ~~-----~~vv~~~GDGa~~-~g~~~EaL~tA~~~~LP------vi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 210 (341)
T TIGR03181 143 ED-----NVAVTYFGDGGTS-EGDFYEALNFAGVFKAP------VVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPG 210 (341)
T ss_pred CC-----CEEEEEecCCccc-cChHHHHHHHHhccCCC------EEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCE
Confidence 65 8999999999998 99999999999 999 999999999999997666556678999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-CCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Q 002419 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (925)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp-~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (925)
++|||+|+++|+++++.|+++++++++|+|||++|||++|||++|+| .||++++.+.|+ ++||+.+|+++|+++|++|
T Consensus 211 ~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~ 289 (341)
T TIGR03181 211 VQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWD 289 (341)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999999998 577777777775 6999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002419 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (925)
Q Consensus 541 ~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~ 580 (925)
+++++++++++++++++++++|++.| |++++.++++|+++
T Consensus 290 ~~e~~~i~~~~~~~v~~a~~~a~~~p~P~~~~~~~~vy~~~ 330 (341)
T TIGR03181 290 EEQEEALEEEAEAEVAEAVAEALALPPPPVDDIFDHVYAEL 330 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcccCC
Confidence 99999999999999999999999988 88889999999753
No 17
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.4e-49 Score=414.86 Aligned_cols=316 Identities=16% Similarity=0.222 Sum_probs=289.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHH
Q 002419 228 PMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGL----EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVL 303 (925)
Q Consensus 228 ~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~----eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~L 303 (925)
.+.++.|..++||+.|+....+|+.+..-+++|+ .++ .|.|++-+|.+++|++ +|+|+| .||.-+.+|
T Consensus 80 dp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGR-iSFYmT~~GEEa~higSAAAL~p------~Dli~g-QYREaGVLl 151 (432)
T KOG1182|consen 80 DPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGR-ISFYMTNFGEEAIHIGSAAALEP------QDLIYG-QYREAGVLL 151 (432)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcce-EEEEEeccchhhhhhhhhhhCCc------cccccc-ccccCceEE
Confidence 5789999999999999999999999998887664 443 8999999999999887 899996 999999999
Q ss_pred HHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhh
Q 002419 304 GNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYY 383 (925)
Q Consensus 304 a~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~ 383 (925)
.+ |.++++++.+.+|+..+..+ .++|++|+| +.+++ .+..+|+|.+++|.|+|+|+|.+.+
T Consensus 152 wR--gftle~f~~qCyGn~~d~gk------GrQMPvHyG-s~eln----------f~tissplatqlpqAvGaaYa~k~~ 212 (432)
T KOG1182|consen 152 WR--GFTLEEFMNQCYGNKSDLGK------GRQMPVHYG-SKELN----------FVTISSPLATQLPQAVGAAYALKMR 212 (432)
T ss_pred Ec--CccHHHHHHHhcCCcccccc------ccccccccC-ccccc----------eEEecchhhhccchhhhhhhhhhhc
Confidence 99 99999999999998876533 279999999 66544 4556789999999999999999986
Q ss_pred cCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCcc
Q 002419 384 SNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAP 460 (925)
Q Consensus 384 ~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP 460 (925)
.++ +.++||++|||+++ +|.+|-++|+| ..| +||+|-||+|+||||.+++..+.-++-++.+|||.
T Consensus 213 ~~n----nac~V~yfGdG~aS-EGD~HA~~NfAAtle~P------vif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~ 281 (432)
T KOG1182|consen 213 KKN----NACAVTYFGDGAAS-EGDAHAAFNFAATLECP------VIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIR 281 (432)
T ss_pred ccC----CeEEEEEecCCccc-ccchhhhhhHHHHhCCC------EEEEEcCCCeeeccccHHHhcCCceEEeccccceE
Confidence 553 48999999999999 99999999999 999 99999999999999999999998999999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-CcCHHHHHHHHhCCCHHHHHHHHHHHcCCC
Q 002419 461 IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHV 539 (925)
Q Consensus 461 ~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~ 539 (925)
.++|||||+.|||.|++.|.+++-+..+|||||++|||...||++||.+ ||..+|.+-|.+.+.|+.+|++++.++|+|
T Consensus 282 sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw 361 (432)
T KOG1182|consen 282 SIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWW 361 (432)
T ss_pred EEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999986 999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCCC
Q 002419 540 TQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGFK 581 (925)
Q Consensus 540 t~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~~ 581 (925)
+++...++++++++++-++++.|++.+ |+..++|+++|..++
T Consensus 362 ~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P 404 (432)
T KOG1182|consen 362 SEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMP 404 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhh
Confidence 999999999999999999999998765 888899999997653
No 18
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.2e-39 Score=382.05 Aligned_cols=466 Identities=13% Similarity=0.130 Sum_probs=324.4
Q ss_pred HhhCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCCCcEEE-cCCccc
Q 002419 221 DKIETPT-PMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVI-GMPHRG 298 (925)
Q Consensus 221 ~~iE~~~-~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vi-gm~HRg 298 (925)
++|.+|. -..|+.+++.. +-.-++.+.++.- .+ .+|-..+..|+ +-++++.+..- +. .+|+++ -+.||+
T Consensus 4 ~~~~~p~d~~~l~~~~l~~-l~~~ir~~~~~~~--~~-~~Gh~~~~lg~--vel~~al~~~f--~~-~~D~ii~d~ghr~ 74 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQ-LASEIRTALLEKD--SA-HGGHVGPNLGV--VELTIALHYVF--NS-PKDKIVWDVSHQS 74 (581)
T ss_pred hhcCCHHHHhhCCHHHHHH-HHHHHHHHHHHHH--Hh-cCCCcCcchhH--HHHHHHHHhhc--CC-CCCcEEEecCCch
Confidence 3444442 24567555544 3333444443332 11 12333345777 33334333330 11 255554 458999
Q ss_pred hHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhh
Q 002419 299 RLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTR 378 (925)
Q Consensus 299 rln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~ 378 (925)
+++.|+. |.++..++.|.+|+.+|.+++. +| .|-. ...+|+++++|+|+|+|+
T Consensus 75 ~~~~l~~--G~~~~~~~~~~~g~~~G~~~~~---~s----~~~~------------------~~~g~~~~~ls~A~G~A~ 127 (581)
T PRK12315 75 YPHKMLT--GRKEAFLDPDHYDDVTGYTNPE---ES----EHDF------------------FTVGHTSTSIALATGLAK 127 (581)
T ss_pred HHHHHHc--CCccchhhHHHcCCCCCCCCCC---CC----CCCC------------------cCCCcHHHHHHHHHHHHH
Confidence 9999988 9999999999999999887642 23 2221 122779999999999999
Q ss_pred hhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCC---------CcC
Q 002419 379 AKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS---------GRS 446 (925)
Q Consensus 379 A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~---------~rs 446 (925)
|.++++.+ .+++|++|||+++ +|.+||+||+| ++| +|+||+||+|+++++... ...
T Consensus 128 A~k~~~~~-----~~vv~~iGDG~~~-eG~~~EAln~A~~~k~~------li~Ii~dN~~si~~~~~~~~~~l~~~~~~~ 195 (581)
T PRK12315 128 ARDLKGEK-----GNIIAVIGDGSLS-GGLALEGLNNAAELKSN------LIIIVNDNQMSIAENHGGLYKNLKELRDTN 195 (581)
T ss_pred HHHhcCCC-----CeEEEEECchhhh-cchHHHHHHHHHhhCCC------EEEEEECCCCcCCCCCchhhhhhhhhhhcc
Confidence 99987665 7899999999999 99999999999 899 999999999999987641 222
Q ss_pred cccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCH
Q 002419 447 SQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSS 525 (925)
Q Consensus 447 s~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dp 525 (925)
..+..+++++||++++.| ||+|++++++|++.| ++.++|++|+++|||..|..... +.-..|. ..+|
T Consensus 196 ~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i~~~T~kG~G~~~~~-------~~~~~~h-~~~~ 263 (581)
T PRK12315 196 GQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEV----KDIDHPIVLHIHTLKGKGYQPAE-------ENKEAFH-WHMP 263 (581)
T ss_pred cccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEEEEEeecCCCCChhh-------cCHHhcC-CCCC
Confidence 345678999999999999 999999999988876 45789999999999999943110 0001121 1110
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhh
Q 002419 526 LEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKA 605 (925)
Q Consensus 526 i~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~ 605 (925)
.+. .++-.
T Consensus 264 -----------------------------------------f~~---------------------~~~~~---------- 271 (581)
T PRK12315 264 -----------------------------------------FDL---------------------ETGQS---------- 271 (581)
T ss_pred -----------------------------------------CCc---------------------ccCcc----------
Confidence 000 00000
Q ss_pred hhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceec
Q 002419 606 ITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYC 685 (925)
Q Consensus 606 ~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~ 685 (925)
.++. ....|..+-..++..++.++++|.+.++|... .++.
T Consensus 272 ---~~~~---------------------~~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~-~~~~--------------- 311 (581)
T PRK12315 272 ---KVPA---------------------SGESYSSVTLDYLLKKIKEGKPVVAINAAIPG-VFGL--------------- 311 (581)
T ss_pred ---cCCC---------------------CCcCHHHHHHHHHHHHhccCCCEEEEeCcccc-ccCc---------------
Confidence 0000 01123334445677888999999999999743 3332
Q ss_pred cCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEc
Q 002419 686 PLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVML 765 (925)
Q Consensus 686 pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~l 765 (925)
+.+. ++| +.|++|++|+|.+++|++.|+|+.|.+|++ ++|.+|+..|.+||-+-++. ++.|++++.
T Consensus 312 --~~f~--~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv---~~fs~Fl~ra~dQi~~d~a~------~~lpv~~~~ 377 (581)
T PRK12315 312 --KEFR--KKY-PDQYVDVGIAEQESVAFASGIAANGARPVI---FVNSTFLQRAYDQLSHDLAI------NNNPAVMIV 377 (581)
T ss_pred --HHHH--Hhc-cccccCCCchHHHHHHHHHHHHHCcCeEEE---EeeHHHHHHHHHHHHHHHHh------cCCCEEEEE
Confidence 5777 777 689999999999999999999999999976 89999998888555443332 358999999
Q ss_pred CccC-CCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecc
Q 002419 766 PHGY-DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPK 844 (925)
Q Consensus 766 PhG~-~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK 844 (925)
+|+. .|.||.|++. | |..++.++|| |+|+.|++|.++.++|+.++.. .+.|++|..||
T Consensus 378 ~~~g~~~dG~TH~~~--~--------Dia~lr~iPn----------l~V~~P~d~~e~~~~l~~a~~~-~~gP~~ir~~r 436 (581)
T PRK12315 378 FGGSISGNDVTHLGI--F--------DIPMISNIPN----------LVYLAPTTKEELIAMLEWALTQ-HEHPVAIRVPE 436 (581)
T ss_pred ECCcccCCCcccccc--H--------HHHHHhcCCC----------CEEEecCCHHHHHHHHHHHHhC-CCCcEEEEEcC
Confidence 9955 5589999887 2 2245678997 9999999999999999999863 25899999999
Q ss_pred cccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 845 NLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 845 ~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
..+...... .++|.. +.. .|+.+ .+ +-+|+|+|-..+..+++.+.+..-
T Consensus 437 ~~~~~~~~~--~~~~~~-----------~k~-~v~~~-------g~--dvtiia~G~~v~~Al~Aa~~L~~~ 485 (581)
T PRK12315 437 HGVESGPTV--DTDYST-----------LKY-EVTKA-------GE--KVAILALGDFYELGEKVAKKLKEE 485 (581)
T ss_pred CccCCCCCC--ccCccc-----------ceE-EEEec-------CC--CEEEEEEchHHHHHHHHHHHHhhh
Confidence 987643211 123332 211 23332 12 359999999999888888877543
No 19
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-39 Score=348.23 Aligned_cols=217 Identities=20% Similarity=0.241 Sum_probs=186.0
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG 713 (925)
+...+|.+.|+..+|++|++|+|+||||+. |+|+. | +||. ++||+.||+||||||.++.|
T Consensus 2 ~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~---------T-------~GL~--~kfG~~RV~DTPiaE~gi~G 63 (324)
T COG0022 2 MTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRV---------T-------KGLQ--EKFGEERVIDTPIAESGIAG 63 (324)
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhh---------c-------hhHH--HHhCccceecCccchhhhHH
Confidence 456779999999999999999999999986 99999 7 9999 99999999999999999999
Q ss_pred HHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCC--cCCcEEEcCccC-CCCCccCCCchhhhhhhccCC
Q 002419 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDD 790 (925)
Q Consensus 714 ~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~--~~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~~~ 790 (925)
.++|+|+.|.||++ |+||.||+..|++||-+.+++.+++.+. .+|||+|.|.|. .+.|.+|||+ +|.|
T Consensus 64 ~avGaA~~GlrPiv--Eiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs-~ea~------ 134 (324)
T COG0022 64 IAVGAALTGLRPIV--EIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQS-LEAL------ 134 (324)
T ss_pred HHHHHHHcCCcceE--EEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCC-HHHH------
Confidence 99999999999998 9999999999999999999999999986 599999999977 6889999999 9976
Q ss_pred CCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCC
Q 002419 791 NPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDK 870 (925)
Q Consensus 791 ~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~ 870 (925)
|.|+|| ||||+||||+|++|||+++|++ ++||||||||.|||......|-++|+-
T Consensus 135 ----f~h~PG----------lKVV~PStpyDAKGLL~aAIrd--~dPViflE~k~lY~~~~~eVP~~~Y~i--------- 189 (324)
T COG0022 135 ----FAHIPG----------LKVVMPSTPYDAKGLLKAAIRD--PDPVIFLEHKRLYRSFKGEVPEEDYTI--------- 189 (324)
T ss_pred ----HhcCCC----------ceEEecCChHHHHHHHHHHhcC--CCCEEEEecHHHhcccccCCCCCCccc---------
Confidence 889999 9999999999999999999999 999999999999995444456666652
Q ss_pred CCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhh
Q 002419 871 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFY 914 (925)
Q Consensus 871 ~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~ 914 (925)
.|+..+. ..+.-+-.|++.|..-...+++.+.+-
T Consensus 190 -------PlGkA~i---~reG~DvTivtyg~mv~~al~AAe~l~ 223 (324)
T COG0022 190 -------PLGKAKI---VREGSDVTIVTYGAMVHTALEAAEELE 223 (324)
T ss_pred -------cccceee---EecCCceEEEEechHHHHHHHHHHHHh
Confidence 3333321 122233478999996665555555543
No 20
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=4.1e-33 Score=331.99 Aligned_cols=365 Identities=15% Similarity=0.173 Sum_probs=266.0
Q ss_pred cccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~ 437 (925)
..++|+|.++++|+|+|+|.++++.+ ..++|++|||+++ +|.+||+||+| +|| +|+||+||++++
T Consensus 108 ~~~G~~g~~ls~a~G~A~a~~~~~~~-----~~v~~~~GDG~~~-eG~~~Ea~~~a~~~~l~------~i~ii~~N~~~i 175 (617)
T TIGR00204 108 FSAGHSSTSISAGLGIAVAAEKKGAD-----RKTVCVIGDGAIT-AGMAFEALNHAGDLKTD------MIVILNDNEMSI 175 (617)
T ss_pred cCCCchHhHHHHHHHHHHHHHhhCCC-----CEEEEEECCcccc-cccHHHHHHHHHhcCCC------EEEEEECCCccc
Confidence 46789999999999999999987765 7999999999999 99999999999 999 999999999999
Q ss_pred ccCCCCCc-------Cc-----------------c---c-HHHH--------------HhhcCccEE-EEeCCCHHHHHH
Q 002419 438 TTDPMSGR-------SS-----------------Q---Y-CTDV--------------AKALDAPIF-HVNGDDMEAVAH 474 (925)
Q Consensus 438 tT~~~~~r-------ss-----------------~---~-~~d~--------------Aka~giP~~-~VdG~D~eAV~~ 474 (925)
+++..... .+ + . +.++ .+++|+-++ .|||+|++++++
T Consensus 176 ~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~ 255 (617)
T TIGR00204 176 SENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIE 255 (617)
T ss_pred CCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHH
Confidence 98765221 10 0 1 2233 677999999 899999999999
Q ss_pred HHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 002419 475 VCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRI 554 (925)
Q Consensus 475 a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~ 554 (925)
+++.| +..++|++|++.|.|..|-... .+||.. |. ++.
T Consensus 256 al~~a----k~~~~P~~i~~~T~KGkG~~~~----------------e~~~~~-~H------~~~--------------- 293 (617)
T TIGR00204 256 TLKNA----KKLKGPVFLHIQTKKGKGYKPA----------------EKDPIG-WH------GVG--------------- 293 (617)
T ss_pred HHHHH----hcCCCCEEEEEEecCCCCCchh----------------hcChhh-cc------CCC---------------
Confidence 77644 4567899999999999883211 011111 00 000
Q ss_pred HHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCC
Q 002419 555 LSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGE 634 (925)
Q Consensus 555 l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~ 634 (925)
++++ .++. .|. ....
T Consensus 294 -----------~~~~---------------------~~~~--------------~~~-------------------~~~~ 308 (617)
T TIGR00204 294 -----------PFDL---------------------STGC--------------LPK-------------------SKSA 308 (617)
T ss_pred -----------CCCh---------------------hhCC--------------cCC-------------------CCCC
Confidence 0000 0000 000 0001
Q ss_pred CccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHH
Q 002419 635 GIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGF 714 (925)
Q Consensus 635 ~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~ 714 (925)
..+|..+-..++..+++++++|++...|...++ + ++++. ++| +.|++|++|+|.+++|+
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~-~-----------------~~~f~--~~f-P~R~~d~GIaEq~~vg~ 367 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGS-G-----------------LDKFS--RKF-PDRYFDVAIAEQHAVTF 367 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCc-C-----------------hHHHH--HHC-ccccccCCccHHHHHHH
Confidence 134455666778889999999999888875443 1 26788 888 89999999999999999
Q ss_pred HhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCCC-CccCCCchhhhhhhccCCCC
Q 002419 715 ELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQ-GPEHSSARLERFLQMSDDNP 792 (925)
Q Consensus 715 ~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G~-GpeHSs~R~ErfLql~~~~~ 792 (925)
+.|+|+.|.+|++ ++ |++|+.-|.+||-+.++. ...|++++.+| |+.|. ||.|++. .+ .
T Consensus 368 AaGlA~~G~~Pvv--~~-~a~Fl~ra~dQi~~~~a~------~~lpV~i~~~~~G~~g~dG~tH~~~-~d---------i 428 (617)
T TIGR00204 368 AAGMAIEGYKPFV--AI-YSTFLQRAYDQVVHDVCI------QKLPVLFAIDRAGIVGADGETHQGA-FD---------I 428 (617)
T ss_pred HHHHHHCCCEEEE--Ee-cHHHHHHHHHHHHHHHHh------cCCCEEEEEECCCcCCCCCcccccc-hH---------H
Confidence 9999999999999 98 999999888776555542 35899999997 56555 9999997 43 2
Q ss_pred CcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCC
Q 002419 793 YVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQG 872 (925)
Q Consensus 793 ~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~ 872 (925)
.++.++|| |+|+.|++|+|++++|+.++.. .+.|++|..||..+...........+ |-
T Consensus 429 a~lr~iPg----------l~V~~Psd~~e~~~~l~~a~~~-~~~Pv~ir~~r~~~~~~~~~~~~~~~-----------~~ 486 (617)
T TIGR00204 429 SYLRCIPN----------MVIMAPSDENELRQMLYTGYHY-DDGPIAVRYPRGNAVGVELTPEPEKL-----------PI 486 (617)
T ss_pred HHHhcCCC----------cEEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEccCCcCCcccCCccccc-----------cC
Confidence 34678997 9999999999999999999975 24899999999876321100000111 12
Q ss_pred CceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 873 TRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 873 ~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
|..+ |+.+. + +-+|+++|-..+..+++.+.+..-
T Consensus 487 Gk~~-vlr~G-------~--dvtIva~G~~v~~al~Aa~~L~~~ 520 (617)
T TIGR00204 487 GKSE-VLRKG-------E--KILILGFGTLVPEALEVAESLNEK 520 (617)
T ss_pred CceE-EEEcC-------C--CEEEEEcCHHHHHHHHHHHHHHhc
Confidence 4443 33321 2 349999999999988888877543
No 21
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=4.9e-32 Score=324.00 Aligned_cols=399 Identities=15% Similarity=0.180 Sum_probs=271.2
Q ss_pred cccCCcccccceeehhhhhhhhhcCCC-----CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEe
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~-----~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~N 432 (925)
+..+++|.++|.|+|+|+|.++.+..- ...+..++|++|||+++ +|.++|+|+.| +||+ +|+||.|
T Consensus 115 ~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~-~g~~~Eal~~A~~~~L~~-----li~v~dn 188 (624)
T PRK05899 115 TTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLM-EGISHEACSLAGHLKLGN-----LIVIYDD 188 (624)
T ss_pred eCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhh-chHHHHHHHHHHHhCCCC-----EEEEEEC
Confidence 346889999999999999998765410 01147899999999999 99999999999 9997 9999999
Q ss_pred CCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-CCc
Q 002419 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SFT 511 (925)
Q Consensus 433 Nq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp-~yt 511 (925)
|+|+++++... ....++.+++++||++++.|||+|++++..|.+.|.+ .++|++|++.|+|.+||...+++ .|.
T Consensus 189 N~~~~~~~~~~-~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 189 NRISIDGPTEG-WFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred CCCcccccccc-cccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 99999987663 3357889999999999999999999999998888764 36899999999999999854433 232
Q ss_pred C----HHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCccccc
Q 002419 512 Q----PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLS 587 (925)
Q Consensus 512 q----p~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~ 587 (925)
. ++++++..+ +| + ++. +..++.+++ .+.++.+.+.... ....|..
T Consensus 264 ~~~~~~~~~~~~~~----------~l---~-~~~-~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~-------- 312 (624)
T PRK05899 264 GAPLGAEEIAAAKK----------EL---G-WDY-EPFEVPEEV----YAHWRKAKERGAK----AEAEWNE-------- 312 (624)
T ss_pred CCCCCHHHHHHHHH----------Hc---C-CCc-ccccCChHH----HHHHHHhhhcCch----hHHHHHH--------
Confidence 1 222222211 11 1 100 000111111 1111111110000 0001100
Q ss_pred ccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcc
Q 002419 588 RIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGT 667 (925)
Q Consensus 588 ~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGt 667 (925)
.+ . +..+....+-..++..++.++++|++.++|+..++
T Consensus 313 ------------------------~~-----------------~-~~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~ 350 (624)
T PRK05899 313 ------------------------KF-----------------A-GEKVATRKASGKALNALAKALPELVGGSADLAGSN 350 (624)
T ss_pred ------------------------hh-----------------c-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCCcccc
Confidence 00 0 11223344566778899999999999999998776
Q ss_pred cccccceeeecCCCceeccCCCccccCCCc----ceEEEcCCcchHHHHHHHhhhcCCC-CCcceeec--hhhhhhHhhH
Q 002419 668 FSHRHSVLHDQETGEQYCPLDHVMMNQDAE----MFTVSNSSLSEFGVLGFELGYSMEN-PNSLVMWE--AQFGDFANGA 740 (925)
Q Consensus 668 F~~RHav~~dq~t~~~y~pL~~l~~~~~~g----~~rV~nspLSE~ailG~~~G~s~~g-~~~lviwE--aqFgDF~~~a 740 (925)
+.. + .+ . ++|| +.|++|++|+|.+++|++.|+|+.| .+|++ + ++|.||+..+
T Consensus 351 ~~~---------~-------~~-~--~~f~~~~~p~R~~d~GIaE~~~vg~A~GlA~~G~~~pv~--~t~~~F~~r~~~q 409 (624)
T PRK05899 351 NTK---------I-------KG-S--KDFAPEDYSGRYIHYGVREFAMAAIANGLALHGGFIPFG--GTFLVFSDYARNA 409 (624)
T ss_pred Ccc---------c-------cc-c--cccCccCCCCCeeeeChhHHHHHHHHHHHHHcCCCeEEE--EEcHHHHHHHHHH
Confidence 654 1 11 1 2233 4899999999999999999999999 99988 8 8998887643
Q ss_pred HHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcC
Q 002419 741 QVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVT 817 (925)
Q Consensus 741 q~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~ps 817 (925)
|.+ . .. ...|++++..| |+ .| .||.| |+ +|.. .++.++|| |+|+.|+
T Consensus 410 ---ir~---~--~~--~~~pv~~v~~~~G~~~g~~G~tH-q~-~edi--------a~~r~iP~----------~~V~~P~ 459 (624)
T PRK05899 410 ---IRL---A--AL--MKLPVIYVFTHDSIGVGEDGPTH-QP-VEQL--------ASLRAIPN----------LTVIRPA 459 (624)
T ss_pred ---HHH---H--Hh--cCCCEEEEEECCCcCcCCCCCCc-cc-HHHH--------HHHHhCCC----------cEEEeCC
Confidence 322 1 11 34688888655 76 34 69999 88 8853 34668897 9999999
Q ss_pred ChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEE
Q 002419 818 TPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLIL 897 (925)
Q Consensus 818 tpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvil 897 (925)
+|.+++++|+.++.. .++|++|..+|.-.......++.. ..+.|. .+|.+. -+-+|+
T Consensus 460 d~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~~~~~~~~-----------~~~~G~--~~l~~G---------~dvtii 516 (624)
T PRK05899 460 DANETAAAWKYALER-KDGPSALVLTRQNLPVLERTAQEE-----------GVAKGG--YVLRDD---------PDVILI 516 (624)
T ss_pred CHHHHHHHHHHHHHc-CCCCEEEEEeCCCCCCcCCccccc-----------cccCCc--EEEecC---------CCEEEE
Confidence 999999999999964 259999999864321110000001 122343 444431 135999
Q ss_pred ecchHHHHHHHHHHHhhhcc
Q 002419 898 CSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 898 csGkvyydL~~~~~~~~~~~ 917 (925)
++|-.-+..+++.+.+..-|
T Consensus 517 a~G~~v~~al~Aa~~L~~~g 536 (624)
T PRK05899 517 ATGSEVHLALEAADELEAEG 536 (624)
T ss_pred EeCHHHHHHHHHHHHHHhcC
Confidence 99999999988888876443
No 22
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=9.3e-32 Score=319.13 Aligned_cols=363 Identities=15% Similarity=0.172 Sum_probs=267.0
Q ss_pred cccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~ 437 (925)
...+|+|.++|+|+|+|+|.+++++ .+..++|++|||+++ +|.++|+|+.| ++| +|+||.||+|++
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~----~~~~v~~i~GDG~l~-eG~~~Eal~~A~~~~~n------li~IvdnN~~~i 182 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGG----EDRKVVAVIGDGALT-GGMAFEALNNAGDLKSD------LIVILNDNEMSI 182 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCC----CCCeEEEEEcccccc-cCHHHHHHHHHHhhCCC------EEEEEECCCCcC
Confidence 4568999999999999999988631 136899999999998 99999999999 888 999999999999
Q ss_pred ccCCCCC---cCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCC-CCCCcC
Q 002419 438 TTDPMSG---RSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEID-EPSFTQ 512 (925)
Q Consensus 438 tT~~~~~---rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D-dp~ytq 512 (925)
+++.... ....+..+++++||++++ .|||+|++++++|.+.|. +.++|++|++.|+|-+|..... ++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~T~kg~G~~~~e~~~~--- 255 (580)
T PRK05444 183 SPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKNAK----DLKGPVLLHVVTKKGKGYAPAEADPI--- 255 (580)
T ss_pred CCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHHHH----hCCCCEEEEEEecCCcCCChhhcCcc---
Confidence 8876433 123456789999999999 589999999998776554 4579999999999999854221 010
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCC
Q 002419 513 PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNT 592 (925)
Q Consensus 513 p~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t 592 (925)
.| |..| ..+++ +
T Consensus 256 -----~~--h~~~------------~~~~~-------------------------------------------------~ 267 (580)
T PRK05444 256 -----KY--HGVG------------KFDPE-------------------------------------------------T 267 (580)
T ss_pred -----cc--CCCC------------CCCcc-------------------------------------------------c
Confidence 01 1111 00000 0
Q ss_pred CCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCccccccc
Q 002419 593 GVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRH 672 (925)
Q Consensus 593 ~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RH 672 (925)
+... .+ ......+|..+-..++..++.++++|.+.+.|...|+ ..
T Consensus 268 ~~~~------------~~--------------------~~~~~~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~-~~-- 312 (580)
T PRK05444 268 GEQP------------KS--------------------SKPGKPSYTKVFGETLCELAEKDPKIVAITAAMPEGT-GL-- 312 (580)
T ss_pred CCcc------------cc--------------------CCCCcccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC-CH--
Confidence 0000 00 0001145666777788899999999999999986443 22
Q ss_pred ceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhh
Q 002419 673 SVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGE 752 (925)
Q Consensus 673 av~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~ 752 (925)
..+. ++| +.|++|++|+|.+++|++.|+|+.|.+|++ +. |.+|+.-|.+||-+.++-
T Consensus 313 ---------------~~f~--~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~--~~-f~~F~~ra~dQi~~~~a~-- 369 (580)
T PRK05444 313 ---------------VKFS--KRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVV--AI-YSTFLQRAYDQVIHDVAL-- 369 (580)
T ss_pred ---------------HHHH--HHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEE--Ee-eHHHHHHHHHHHHHHhhh--
Confidence 2466 667 789999999999999999999999999988 98 999998888666554432
Q ss_pred hhhCCcCCcEEEcCc-cCCCC-CccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHH
Q 002419 753 SKWLRQSGLVVMLPH-GYDGQ-GPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQI 830 (925)
Q Consensus 753 ~kw~~~~~lv~~lPh-G~~G~-GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~ 830 (925)
...|++++.+| |+.|. ||.|++. | |..++.++|| |+|+.|++|.|++.+|+.++
T Consensus 370 ----~~~pv~~v~~~~G~~g~dG~tH~~~--e--------dia~lr~iP~----------l~V~~Psd~~e~~~~l~~a~ 425 (580)
T PRK05444 370 ----QNLPVTFAIDRAGLVGADGPTHQGA--F--------DLSYLRCIPN----------MVIMAPSDENELRQMLYTAL 425 (580)
T ss_pred ----cCCCEEEEEeCCCcCCCCCcccccc--H--------HHHHHhcCCC----------CEEEeeCCHHHHHHHHHHHH
Confidence 36899999997 55554 9999987 2 2245778997 99999999999999999999
Q ss_pred hccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHH
Q 002419 831 HREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVAL 910 (925)
Q Consensus 831 ~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~ 910 (925)
.. .++|++|..++.++... ......++. -|..+. +.+. + +-+|+++|-..+..+++.
T Consensus 426 ~~-~~~P~~ir~~r~~~~~~-~~~~~~~~~-----------~Gk~~v-l~~G-------~--dvtIia~G~~v~~al~Aa 482 (580)
T PRK05444 426 AY-DDGPIAIRYPRGNGVGV-ELPELEPLP-----------IGKGEV-LREG-------E--DVAILAFGTMLAEALKAA 482 (580)
T ss_pred hC-CCCcEEEEecCCCCCCC-CCCCccccc-----------CCceEE-EEcC-------C--CEEEEEccHHHHHHHHHH
Confidence 53 26999999999886421 111111121 133333 2221 2 349999999999888888
Q ss_pred HHhh
Q 002419 911 YFFY 914 (925)
Q Consensus 911 ~~~~ 914 (925)
+.+.
T Consensus 483 ~~L~ 486 (580)
T PRK05444 483 ERLA 486 (580)
T ss_pred HHhC
Confidence 7764
No 23
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.97 E-value=4.3e-29 Score=295.69 Aligned_cols=372 Identities=15% Similarity=0.164 Sum_probs=263.4
Q ss_pred ccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCcc-
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVA- 436 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~g- 436 (925)
....+|+|.++++|+|+|+|+++++.+ .-++|++|||+++ +|.+|||||.| .+.+ +|.|+.+|+..
T Consensus 173 ~~~tGslg~glS~a~GmA~a~~l~g~~-----~~v~~viGDGel~-eG~~wEAl~~a~~~~~n-----livIlddN~~~~ 241 (641)
T PLN02234 173 SFGTGHSSTTLSAGLGMAVGRDLKGMN-----NSVVSVIGDGAMT-AGQAYEAMNNAGYLHSN-----MIVILNDNKQVS 241 (641)
T ss_pred EECCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEEEccchhh-hHHHHHHHHHHhhhCCC-----EEEEEECCCCCc
Confidence 345689999999999999999987665 6799999999999 99999999999 3444 99999999872
Q ss_pred -----cccCCCCC----------cCc-----ccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 437 -----FTTDPMSG----------RSS-----QYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 437 -----~tT~~~~~----------rss-----~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
...+.+.. +++ ....++.++||+.++ .|||+|++++..|.+.+.+. +..+|++|.+.
T Consensus 242 ~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~ 319 (641)
T PLN02234 242 LPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVV 319 (641)
T ss_pred ccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEE
Confidence 11111110 000 245789999999999 99999999999988765421 23589999999
Q ss_pred EeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 002419 496 CYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSA 575 (925)
Q Consensus 496 tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~ 575 (925)
|-+-.|-...... + .
T Consensus 320 T~KGkGv~~~E~~----~-------------------------------------------------------------~ 334 (641)
T PLN02234 320 TEKGRGYPYAERA----D-------------------------------------------------------------D 334 (641)
T ss_pred EecCCCcchhhcC----C-------------------------------------------------------------c
Confidence 9888776432110 0 0
Q ss_pred hccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCc
Q 002419 576 YWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNH 655 (925)
Q Consensus 576 ~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~ 655 (925)
.|...... + ..++-. .. .....++|..+-+.|+..++++|++
T Consensus 335 ~~H~~~~~-~----~~~g~~----------~~-----------------------~~~~~~sy~~af~~aL~e~a~~D~~ 376 (641)
T PLN02234 335 KYHGVLKF-D----PETGKQ----------FK-----------------------NISKTQSYTSCFVEALIAEAEADKD 376 (641)
T ss_pred ccCCCCCC-C----cccccc----------cc-----------------------CCCCCCCHHHHHHHHHHHHHHHCcC
Confidence 01110000 0 000000 00 0011246777788889999999999
Q ss_pred EEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhh
Q 002419 656 VRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGD 735 (925)
Q Consensus 656 v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgD 735 (925)
|++.|+|+..||+- ..+. ++| +.|++|++|+|.+++|++.|+|+.|.+|++ ++ |++
T Consensus 377 Iv~l~adm~ggt~~------------------~~f~--~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv--~~-fs~ 432 (641)
T PLN02234 377 IVAIHAAMGGGTML------------------NLFE--SRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFC--TI-YSS 432 (641)
T ss_pred EEEEECCCCCCcch------------------HHHH--HHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEE--Ee-hHH
Confidence 99999999766542 3555 677 899999999999999999999999999999 88 999
Q ss_pred hHhhHHHHHHHHHHhhhhhhCCcCCcEEEcC-ccCCC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEE
Q 002419 736 FANGAQVIFDQFVNSGESKWLRQSGLVVMLP-HGYDG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (925)
Q Consensus 736 F~~~aq~~idq~i~~~~~kw~~~~~lv~~lP-hG~~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~V 813 (925)
|..-|.+||-+-++ .++.|++++.- .|+.| .||+|++. .+- ..+.++|| |+|
T Consensus 433 Fl~RA~DQI~~dva------~~~lpV~~v~~~aG~~g~dG~TH~~~-~Di---------a~lr~iPn----------l~V 486 (641)
T PLN02234 433 FMQRAYDQVVHDVD------LQKLPVRFAIDRAGLMGADGPTHCGA-FDV---------TFMACLPN----------MIV 486 (641)
T ss_pred HHHHHHHHHHHHHh------hcCCCEEEEEeCCccCCCCCcccccc-HHH---------HHHhcCCC----------CEE
Confidence 99888866655553 34578888873 47655 69999998 332 12348897 999
Q ss_pred EEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCcc
Q 002419 814 VNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIR 893 (925)
Q Consensus 814 v~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~ 893 (925)
+.|++|++++++|+.++.. .++|++|..||..+... ..+.+... ...|-|.. .|+.+. + +
T Consensus 487 ~~Psd~~E~~~~l~~a~~~-~~~Pv~ir~~R~~~~~~--~~~~~~~~-------~~~~iGk~-~vlreG-------~--d 546 (641)
T PLN02234 487 MAPSDEAELFNMVATAAAI-DDRPSCFRYHRGNGIGV--SLPPGNKG-------VPLQIGRG-RILRDG-------E--R 546 (641)
T ss_pred EeeCCHHHHHHHHHHHHhC-CCCCEEEEeeccccccc--ccCCCCcc-------ccccCceE-EEEEeC-------C--C
Confidence 9999999999999998764 15899999999876211 11111000 00111222 234332 2 3
Q ss_pred EEEEecchHHHHHHHHHHHhhhcc
Q 002419 894 RLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 894 rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
-.|+++|-..+..+++.+.+..-|
T Consensus 547 vtIva~G~~v~~Al~AA~~L~~~G 570 (641)
T PLN02234 547 VALLGYGSAVQRCLEAASMLSERG 570 (641)
T ss_pred EEEEEecHHHHHHHHHHHHHHhcC
Confidence 499999999999999888876544
No 24
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.97 E-value=1.2e-31 Score=276.10 Aligned_cols=184 Identities=22% Similarity=0.263 Sum_probs=167.9
Q ss_pred CCccHHHHHHHHHHHHHHcCCcEEEecccCCC-cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHH
Q 002419 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVER-GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (925)
Q Consensus 634 ~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r-GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ail 712 (925)
++++.-.+.+.|+.-.|+.|++-.++||||+- |+|.. | .+|. ++||+.||+||||+|.+|+
T Consensus 39 ~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrc---------t-------~gl~--~kfgk~rvfntplceqgiv 100 (362)
T KOG0525|consen 39 KKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRC---------T-------TGLA--EKFGKDRVFNTPLCEQGIV 100 (362)
T ss_pred ccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEe---------e-------cchH--HHhCccccccCchhhcccc
Confidence 34666678888999999999999999999996 89998 5 6999 9999999999999999999
Q ss_pred HHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCc---CCcEEEcCccCCCCC-ccCCCchhhhhhhcc
Q 002419 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ---SGLVVMLPHGYDGQG-PEHSSARLERFLQMS 788 (925)
Q Consensus 713 G~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~---~~lv~~lPhG~~G~G-peHSs~R~ErfLql~ 788 (925)
||++|.+..|.+.++ |+||+||++.|++||.|-+++-+++.+.+ -+|++|.|.|..|.| .+|||+ .|.|
T Consensus 101 gfgig~aa~g~~aia--eiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqs-peaf---- 173 (362)
T KOG0525|consen 101 GFGIGLAAMGATAIA--EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQS-PEAF---- 173 (362)
T ss_pred eechhhhhcccceEE--EEeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCC-chhh----
Confidence 999999999999988 99999999999999988887777777654 489999999998765 599999 8877
Q ss_pred CCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCccccc
Q 002419 789 DDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFD 860 (925)
Q Consensus 789 ~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~ 860 (925)
|.|+|| +|||+|.+|-++++||.++|++ +||+||||||.|||...+..|.+||.
T Consensus 174 ------f~h~pg----------ikvviprsp~qakglllscird--pnp~iffepk~lyr~a~edvp~~dy~ 227 (362)
T KOG0525|consen 174 ------FCHVPG----------IKVVIPRSPRQAKGLLLSCIRD--PNPCIFFEPKILYRQAVEDVPEGDYM 227 (362)
T ss_pred ------eecCCC----------ceEEecCCcchhhceeeeeccC--CCceEEechHHHHHHhhhhCCCCCcc
Confidence 889999 9999999999999999999999 99999999999999988888888886
No 25
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.97 E-value=1.4e-28 Score=293.52 Aligned_cols=369 Identities=15% Similarity=0.169 Sum_probs=259.4
Q ss_pred cccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCc-c
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV-A 436 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~-g 436 (925)
...+|+|.++++|+|+|+|.++++.+ ..++|++|||+++ +|.+||+||+| ++| +|+||+||+. +
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~-----~~v~~viGDG~~~-~G~~~Ealn~a~~~~~~------li~iv~~N~~~s 208 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKK-----NNVVAVIGDGAMT-AGQAYEAMNNAGYLDSD------MIVILNDNKQVS 208 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCC-----CEEEEEecccccc-hhhHHHHHHHHHhhCcC------EEEEEECCCCcc
Confidence 45689999999999999999987665 7899999999999 99999999999 788 9999999996 4
Q ss_pred cccCCCCC---------------cCcc-c--------------------HH----------------HHHhhcCccEE-E
Q 002419 437 FTTDPMSG---------------RSSQ-Y--------------------CT----------------DVAKALDAPIF-H 463 (925)
Q Consensus 437 ~tT~~~~~---------------rss~-~--------------------~~----------------d~Aka~giP~~-~ 463 (925)
+.|.+-++ +.++ | .. .+.+++|+..+ .
T Consensus 209 ~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~ 288 (677)
T PLN02582 209 LPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGP 288 (677)
T ss_pred ccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEee
Confidence 42211110 0000 0 10 13577999966 8
Q ss_pred EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHH
Q 002419 464 VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQED 543 (925)
Q Consensus 464 VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee 543 (925)
|||+|++++.++.+.|.+. ..++|++|+++|-+-.|-..+.+ +|.
T Consensus 289 iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ae~----------------~~~----------------- 333 (677)
T PLN02582 289 VDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYAER----------------AAD----------------- 333 (677)
T ss_pred eCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChhhc----------------Chh-----------------
Confidence 9999999999988777542 11589999999988887643210 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHH
Q 002419 544 INKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVY 623 (925)
Q Consensus 544 ~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~ 623 (925)
.|.+... . ...|+-.. +.
T Consensus 334 --------------------------------~~H~~~~-f----~~~~g~~~-------------~~------------ 351 (677)
T PLN02582 334 --------------------------------KYHGVVK-F----DPATGKQF-------------KV------------ 351 (677)
T ss_pred --------------------------------hcCCCCC-C----CcccCCcc-------------CC------------
Confidence 0111100 0 00011000 00
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEc
Q 002419 624 ELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSN 703 (925)
Q Consensus 624 ~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~n 703 (925)
.....+|.++-..|+..+++++++|++.++|.. |.|+. ..+. ++| +.|++|
T Consensus 352 --------~~~~~~~s~a~~~aL~~~a~~d~~vv~ita~m~-g~~gl-----------------~~f~--~~f-P~R~fd 402 (677)
T PLN02582 352 --------KAKTQSYTTYFAEALIAEAEVDKDVVAIHAAMG-GGTGL-----------------NLFA--RRF-PTRCFD 402 (677)
T ss_pred --------CCCCcCHHHHHHHHHHHHHccCCCEEEEeCCCC-Cccch-----------------HHHH--HHc-Cccccc
Confidence 001236788888899999999999999999974 44454 4677 777 899999
Q ss_pred CCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCC-CCccCCCchh
Q 002419 704 SSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARL 781 (925)
Q Consensus 704 spLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G-~GpeHSs~R~ 781 (925)
++|+|.+++|++.|+|+.|.+|++ ++ |.+|..-|.+||-+-++ .+..|++++++| |+.| .||.|++. .
T Consensus 403 vGIAEq~~vg~AaGLA~~G~kPvv--~~-fs~Fl~RA~DQI~~dva------l~~lpVv~v~~~aG~vg~dG~TH~~~-~ 472 (677)
T PLN02582 403 VGIAEQHAVTFAAGLACEGLKPFC--AI-YSSFLQRGYDQVVHDVD------LQKLPVRFAMDRAGLVGADGPTHCGA-F 472 (677)
T ss_pred cCcCHHHHHHHHHHHHHCCCeEEE--Ee-cHHHHHHHHHHHHHHHH------hcCCCEEEEEECCCcccCCCCccccc-H
Confidence 999999999999999999999988 87 99999888866544443 245899999997 5655 49999997 3
Q ss_pred hhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccc
Q 002419 782 ERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDD 861 (925)
Q Consensus 782 ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~ 861 (925)
+- .++.++|| |+|+.|+++.+++++|+.++.. .+.|++|..|+.... +. ..+-++..
T Consensus 473 Di---------a~lr~iPn----------l~V~~Psd~~E~~~~l~~al~~-~~gPv~IR~pr~~~~-~~-~~~~~~~~- 529 (677)
T PLN02582 473 DV---------TYMACLPN----------MVVMAPSDEAELFHMVATAAAI-DDRPSCFRYPRGNGI-GV-QLPPNNKG- 529 (677)
T ss_pred HH---------HHHhcCCC----------CEEEeeCCHHHHHHHHHHHHhC-CCCCEEEEEecCCCC-Cc-ccCCcccc-
Confidence 32 23568997 9999999999999999999964 158999999987521 11 01111000
Q ss_pred cCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 862 VQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 862 ~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
...|-|.- .|+.+. + +-+|+++|...+..+++.+.+..-
T Consensus 530 ------~~~~iGk~-~vlr~G-------~--dvtIva~G~~v~~Al~Aa~~L~~~ 568 (677)
T PLN02582 530 ------IPIEVGKG-RILLEG-------E--RVALLGYGTAVQSCLAAASLLERH 568 (677)
T ss_pred ------cccccCce-EEEEeC-------C--CEEEEeecHHHHHHHHHHHHHHhc
Confidence 00111222 233331 2 348999999999988888877543
No 26
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.97 E-value=9.5e-28 Score=287.12 Aligned_cols=361 Identities=18% Similarity=0.186 Sum_probs=258.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~ 440 (925)
+|-++++++|+|+|+|.++...+ ..++|++|||+++ +|.+||+|++| ++| +|+||.||+++++++
T Consensus 119 g~~~gslg~a~G~A~a~~~~~~~-----~~v~~v~GDG~~~-eG~~~Eal~~a~~~~~~------li~I~dnN~~~i~~~ 186 (641)
T PRK12571 119 AHSSTSISAALGFAKARALGQPD-----GDVVAVIGDGSLT-AGMAYEALNNAGAADRR------LIVILNDNEMSIAPP 186 (641)
T ss_pred CCCcChHHHHHHHHHHHHHhCCC-----CeEEEEEeCchhh-cchHHHHHHHHHHhCCC------EEEEEECCCeeecCC
Confidence 34466789999999999987654 7899999999999 99999999999 888 999999999999887
Q ss_pred CC-------CCcCc-cc----------------------------------HHHHHhhcCccEE-EEeCCCHHHHHHHHH
Q 002419 441 PM-------SGRSS-QY----------------------------------CTDVAKALDAPIF-HVNGDDMEAVAHVCE 477 (925)
Q Consensus 441 ~~-------~~rss-~~----------------------------------~~d~Aka~giP~~-~VdG~D~eAV~~a~~ 477 (925)
.. +.+.. ++ ..++.+++|+.++ .|||+|++++.+|.+
T Consensus 187 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~ 266 (641)
T PRK12571 187 VGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLR 266 (641)
T ss_pred ccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHH
Confidence 64 22222 11 1478899999999 799999999999877
Q ss_pred HHHHHHHccCCcEEEEEEEeecCCCCC--CCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 002419 478 LAAEWRQTFHSDVVVDLVCYRRFGHNE--IDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRIL 555 (925)
Q Consensus 478 ~A~e~rr~~~~PvlIe~~tYR~~GHne--~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l 555 (925)
.|.+ ..++|++|.+.|-.-+|-+. .+.+. | |--|.
T Consensus 267 ~ak~---~~~~P~~I~~~T~kGkG~~~~e~~~~~---------~--Hg~~~----------------------------- 303 (641)
T PRK12571 267 AARA---RADGPVLVHVVTEKGRGYAPAEADEDK---------Y--HAVGK----------------------------- 303 (641)
T ss_pred HHHh---CCCCCEEEEEEecCccCcchhhcCCCc---------c--cCCCC-----------------------------
Confidence 6653 14789999999999888642 22111 1 21110
Q ss_pred HHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCC
Q 002419 556 SEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEG 635 (925)
Q Consensus 556 ~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~ 635 (925)
.. ... . . ... .. | ..
T Consensus 304 ---------f~--~~~---~--~-~~~--------~~-----------------~-----------------------~~ 318 (641)
T PRK12571 304 ---------FD--VVT---G--L-QKK--------SA-----------------P-----------------------SA 318 (641)
T ss_pred ---------cC--CCC---C--c-ccC--------CC-----------------c-----------------------cc
Confidence 00 000 0 0 000 00 0 00
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFE 715 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~ 715 (925)
.+|..+-..++..+++++++|.+.+.|...|+ +. +++. ++| +.|++|++|+|.+++|++
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~-~~-----------------~~f~--~~~-p~R~id~GIaE~~mvg~A 377 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGT-GL-----------------DKLQ--KRF-PNRVFDVGIAEQHAVTFA 377 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC-Ch-----------------HHHH--HhC-CCcccccCccHHHHHHHH
Confidence 12333444567778999999999999986654 22 5677 777 789999999999999999
Q ss_pred hhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcC-ccCCC-CCccCCCchhhhhhhccCCCCC
Q 002419 716 LGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLP-HGYDG-QGPEHSSARLERFLQMSDDNPY 793 (925)
Q Consensus 716 ~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lP-hG~~G-~GpeHSs~R~ErfLql~~~~~~ 793 (925)
.|+|+.|.+|++ ++ |.+|..-|.+||-+-++ ..+.|++++.. .|+.| .||.|++. .+ ..
T Consensus 378 aGlA~~G~~P~v--~~-f~~Fl~ra~dQI~~~~a------~~~lpv~~v~~~~G~~g~dG~THq~~-~d---------ia 438 (641)
T PRK12571 378 AGLAAAGLKPFC--AV-YSTFLQRGYDQLLHDVA------LQNLPVRFVLDRAGLVGADGATHAGA-FD---------LA 438 (641)
T ss_pred HHHHHCCCEEEE--Ee-hHHHHHHHHHHHHHHHh------hcCCCeEEEEECCCcCCCCCcccccc-HH---------HH
Confidence 999999999988 98 99999888866644443 14579999884 47654 49999997 22 23
Q ss_pred cccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCC
Q 002419 794 VIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGT 873 (925)
Q Consensus 794 ~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~ 873 (925)
++.++|| |+|+.|++|.+++++|+.++.. .+.|++|..||..+.... .+-++... |-+
T Consensus 439 ~lr~iPn----------l~V~~Psd~~e~~~~l~~a~~~-~~~P~~ir~~r~~~~~~~--~~~~~~~~---------~~g 496 (641)
T PRK12571 439 FLTNLPN----------MTVMAPRDEAELRHMLRTAAAH-DDGPIAVRFPRGEGVGVE--IPAEGTIL---------GIG 496 (641)
T ss_pred HHhcCCC----------CEEEeeCCHHHHHHHHHHHHhC-CCCcEEEEEecCcCCccc--cCCCCccc---------cCc
Confidence 4678997 9999999999999999999972 279999999987652111 01111100 001
Q ss_pred ceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 874 RFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 874 ~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
.-+ |+.+. + +-+|+++|...+..+++.+.+.+-
T Consensus 497 k~~-vlr~G-------~--ditIva~G~~v~~aleAa~~L~~~ 529 (641)
T PRK12571 497 KGR-VPREG-------P--DVAILSVGAHLHECLDAADLLEAE 529 (641)
T ss_pred eeE-EEecC-------C--CEEEEEecHHHHHHHHHHHHHHhc
Confidence 111 44331 2 349999999999988888877543
No 27
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.96 E-value=3e-27 Score=283.47 Aligned_cols=429 Identities=14% Similarity=0.170 Sum_probs=269.7
Q ss_pred eccccCCcccccceeehhhhhhhhhcCC-----CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEE
Q 002419 359 LVANPSHLEAVDPVVIGKTRAKQYYSND-----MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIV 430 (925)
Q Consensus 359 l~~npShlg~~~PvA~G~A~A~q~~~~d-----~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV 430 (925)
+....++||.++|+|+|+|+|.++.+.. ....+..++|++|||+++ ||.+||++++| +||+ +|+||
T Consensus 105 i~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~-EG~~~EA~~~A~~~~L~n-----Li~iv 178 (653)
T TIGR00232 105 VEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQ-EGISYEVASLAGHLKLGK-----LIVLY 178 (653)
T ss_pred eeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEcccccc-ccHHHHHHHHHHHhCCCc-----EEEEE
Confidence 3455688999999999999999986421 112357899999999999 99999999999 9998 99999
Q ss_pred EeCCcccccCCCCCcCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEEEeecCCCC--CCC
Q 002419 431 VNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTF-HSDVVVDLVCYRRFGHN--EID 506 (925)
Q Consensus 431 ~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~-~~PvlIe~~tYR~~GHn--e~D 506 (925)
+||+|+++++.+... ..++.+++++||+++++| ||+|++++++|++.| ++. ++|++|++.|+|.+|.+ |..
T Consensus 179 d~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a----~~~~~~P~~I~~~T~~g~G~~~~e~~ 253 (653)
T TIGR00232 179 DSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEA----KASKDKPTLIEVTTTIGFGSPNKAGT 253 (653)
T ss_pred eCCCeeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH----HhCCCCCEEEEEEeeecccCcccCCC
Confidence 999999999988775 578999999999999999 999999998876655 344 48999999999999986 333
Q ss_pred CCCC---cCHHHHHHHHhC----C-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccch
Q 002419 507 EPSF---TQPKMYKIIRSH----P-------SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDW 572 (925)
Q Consensus 507 dp~y---tqp~ey~~i~~~----~-------dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~ 572 (925)
.... -.++++++.++. . ++.+.|+..+.++|- +..+++.+.+++..+. .|.....
T Consensus 254 ~~~H~~~~~~~~~~~~~~~l~~~~~~f~v~~~~~~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~----~p~~~~~ 322 (653)
T TIGR00232 254 HGVHGAPLGDEDVKLTKKNLGWNYNPFEVPQEVYDHFQKTVKERGA-------KAEQEWNELFAAYKKK----YPELAAE 322 (653)
T ss_pred CcccCCCCCHHHHHHHHHHhCCCCCCccCCHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHHH----CHHHHHH
Confidence 2211 234455543321 1 222223222223321 1112222222211110 1111000
Q ss_pred hhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc
Q 002419 573 LSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVE 652 (925)
Q Consensus 573 ~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~ 652 (925)
+...+++ .++.+.... +|+ +. ..++...-..+-..++..+...
T Consensus 323 ~~~~~~~-------------~~p~~~~~~-------~~~-~~----------------~~~~~~atR~~~g~~L~~la~~ 365 (653)
T TIGR00232 323 FTRRLSG-------------ELPADWDKK-------LPE-FK----------------AKLQALATRKYSQNVLNAIANV 365 (653)
T ss_pred HHHHHhc-------------cCchhhhhh-------hhh-hh----------------ccCcchHHHHHHHHHHHHHHhh
Confidence 1111100 001000000 000 00 0000011111223345667788
Q ss_pred CCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcC-CCCCcceeech
Q 002419 653 GNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEA 731 (925)
Q Consensus 653 ~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~-~g~~~lviwEa 731 (925)
++++++..-|+...+.... .++ ..+. +++ +.|.+|.-|+|.+++|++.|+|+ .|.+|++---+
T Consensus 366 ~p~iv~lsaDl~~s~~~~~------~~~-------~~f~--~~~-p~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~ 429 (653)
T TIGR00232 366 LPELLGGSADLAPSNLTKW------KGS-------GDLH--ENP-LGNYIHYGVREFAMGAIMNGIALHGGFKPYGGTFL 429 (653)
T ss_pred CCCEEEEeCCccccCCccc------ccc-------cchh--hcC-CCCeEeecccHHHHHHHHHHHHHcCCCeEEEEEhH
Confidence 9999988889854222110 000 1133 444 56899999999999999999999 67899886667
Q ss_pred hhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC--CCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccc
Q 002419 732 QFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQE 808 (925)
Q Consensus 732 qFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~--~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~ 808 (925)
+|.||+.. +| -..+- ...|+++...| |+ ..-||.| |+ +|-. .++..+|+
T Consensus 430 ~F~~r~~~---~i---r~~a~----~~lpV~~v~th~g~~~G~dG~TH-q~-iedi--------a~lr~iPn-------- 481 (653)
T TIGR00232 430 MFVDYARP---AI---RLAAL----MKLPVIYVYTHDSIGVGEDGPTH-QP-IEQL--------ASLRAIPN-------- 481 (653)
T ss_pred HHHHHHHH---HH---HHHHh----cCCCEEEEEeCCccCCCCCCccc-CC-HHHH--------HHHhcCCC--------
Confidence 77766553 22 11111 23699999987 44 3359999 87 8853 34567886
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCC
Q 002419 809 CNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDL 888 (925)
Q Consensus 809 ~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~ 888 (925)
|+|+.|+++.++..+++.++.. .+.|+++..++.-+.... ..+..++.. |. .+|-+.+
T Consensus 482 --~~v~~PaD~~E~~~~~~~a~~~-~~gP~~irl~r~~~~~~~-~~~~~~~~~-----------G~--~vl~~~~----- 539 (653)
T TIGR00232 482 --LSVWRPCDGNETAAAWKYALES-QDGPTALILSRQNLPQLE-ESSLEKVLK-----------GG--YVLKDSK----- 539 (653)
T ss_pred --CEEEeeCCHHHHHHHHHHHHhc-CCCcEEEEEcCCccCCCC-cccccccCC-----------Cc--EEEEecC-----
Confidence 9999999999999999999942 378999998876543211 111112221 32 3442211
Q ss_pred CCCccEEEEecchHHHHHHHHHHHhh
Q 002419 889 EEGIRRLILCSGKVSSAVCVALYFFY 914 (925)
Q Consensus 889 ~~~v~rvilcsGkvyydL~~~~~~~~ 914 (925)
.-+-+|+++|-.....+++.+.+.
T Consensus 540 --g~dv~iia~G~~v~~al~Aa~~L~ 563 (653)
T TIGR00232 540 --GPDIILIATGSEVSLAVEAAKKLA 563 (653)
T ss_pred --CCCEEEEEeChHHHHHHHHHHHHH
Confidence 123489999998888888877775
No 28
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=99.96 E-value=1e-28 Score=258.13 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=177.4
Q ss_pred CCccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHH
Q 002419 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGV 711 (925)
Q Consensus 634 ~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ai 711 (925)
..+.-..|.+.|+.++|.+|++|+++||+|+. |.|++ | +||. ++||+.||+||||+|.++
T Consensus 33 ~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~Gaykv---------t-------kGL~--~K~G~~RV~DTPItE~gF 94 (359)
T KOG0524|consen 33 KEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKV---------T-------KGLL--DKFGDKRVLDTPITEMGF 94 (359)
T ss_pred eeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeeh---------h-------hhHH--HhcCCceeecCcchhccc
Confidence 34667788999999999999999999999996 99998 6 9999 999999999999999999
Q ss_pred HHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCC--cCCcEEEcCccC-CCCCccCCCchhhhhhhcc
Q 002419 712 LGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERFLQMS 788 (925)
Q Consensus 712 lG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~--~~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~ 788 (925)
.|.++|+|+.|.||++ |.|--.|...|.++|-|-.++..+|.+. .+|+|+|-|.|. .|.|+||||+ .+.
T Consensus 95 tG~avGAA~~GLrPi~--efMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~-f~~----- 166 (359)
T KOG0524|consen 95 TGIAVGAAMAGLRPIC--EFMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQD-FAS----- 166 (359)
T ss_pred chhhHhHHHhCcchhh--hhhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhh-hHH-----
Confidence 9999999999999999 9887777777766655555555667664 489999999999 7899999999 665
Q ss_pred CCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCC
Q 002419 789 DDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGF 868 (925)
Q Consensus 789 ~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~ 868 (925)
||.++|| +|||.|.||.|++|||+.+|++ +|||||+|+..||..+... +-+.+.
T Consensus 167 -----wy~siPG----------lkvvapysaedakGLlKaAIRd--~NPVV~lEnelLYg~~f~i-~~E~ls-------- 220 (359)
T KOG0524|consen 167 -----WYGSIPG----------LKVVAPYSAEDAKGLLKAAIRD--ENPVVFLENELLYGLSFEI-PEEALS-------- 220 (359)
T ss_pred -----HhccCCC----------ceEeccCChhhhhhHHHHhccC--CCCeEEEechhhcCCCccC-ChhhcC--------
Confidence 5789999 9999999999999999999999 9999999999999877643 233333
Q ss_pred CCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 869 DKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 869 ~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
..|--.|+..... ..-+.| .|+.--+.-|--+++-+-+.+.|
T Consensus 221 ----~~fv~p~gkAkie-r~G~~i--Tivt~Sr~v~~~leAA~~L~~~G 262 (359)
T KOG0524|consen 221 ----KDFVLPLGKAKIE-REGTHI--TIVTYSRMVGHCLEAAETLVAKG 262 (359)
T ss_pred ----cceeeeccceeee-ecCCce--EEEEechhHHHHHHHHHHHHhcC
Confidence 3354445443210 112333 44444443444445555566655
No 29
>PRK12753 transketolase; Reviewed
Probab=99.94 E-value=2.7e-24 Score=258.19 Aligned_cols=435 Identities=14% Similarity=0.148 Sum_probs=268.5
Q ss_pred cccCCcccccceeehhhhhhhhhcCCC-----CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEe
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~-----~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~N 432 (925)
...+|||.++++|+|+|+|.++.+..- .-.+..++|++|||+++ +|++||++|+| +||+ +|+||.|
T Consensus 111 ~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~-EG~~~EA~~~A~~~kL~n-----Li~ivd~ 184 (663)
T PRK12753 111 TTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLM-EGISHEVCSLAGTLGLGK-----LIGFYDH 184 (663)
T ss_pred cCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccc-cHHHHHHHHHHHHHCCCC-----EEEEEEC
Confidence 456899999999999999999875310 01247899999999999 99999999999 9997 8999999
Q ss_pred CCcccccCCCCCcCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCC--CCCC
Q 002419 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI--DEPS 509 (925)
Q Consensus 433 Nq~g~tT~~~~~rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~--Ddp~ 509 (925)
|+++++++..... +.++.+++++||++++. |||+|++++++|++.|.+ ..++|++|++.|++-+|++.. +...
T Consensus 185 N~~~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~e~~~~~ 260 (663)
T PRK12753 185 NGISIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNKAGKEES 260 (663)
T ss_pred CCCcCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcccCCCCc
Confidence 9999999988755 57889999999999995 999999999999988875 357899999999999999743 2221
Q ss_pred C---cCHHHHHHHHhC----C-------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 002419 510 F---TQPKMYKIIRSH----P-------SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSA 575 (925)
Q Consensus 510 y---tqp~ey~~i~~~----~-------dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~ 575 (925)
. -.++++++.++. . ++...|+. .++|- ..++++.+.++ ..++..|.....+..
T Consensus 261 H~~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~-------~~~~~w~~~~~----~~~~~~p~~~~~~~~ 327 (663)
T PRK12753 261 HGAPLGEEEVALTRQKLGWHHPPFEIPKEIYAAWDA--REKGE-------KAEQAWNEKFA----AYKKAYPELAAEFTR 327 (663)
T ss_pred cCCCCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh--hhhch-------HHHHHHHHHHH----HHHHHCHHHHHHHHH
Confidence 1 134444433211 0 00111110 11111 11111111111 111111111111111
Q ss_pred hccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCc
Q 002419 576 YWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNH 655 (925)
Q Consensus 576 ~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~ 655 (925)
.+.+ .++.+.-+.+.+.+. ++...+.++.-..+-.-++..+...+++
T Consensus 328 ~~~~-------------~~p~~~~~~~~~~~~--------------------~~~~~~~~~a~r~~~g~~L~~l~~~~p~ 374 (663)
T PRK12753 328 RMSG-------------GLPKDWEKKTQKYIN--------------------ELQANPAKIATRKASQNTLEAYGPLLPE 374 (663)
T ss_pred HhcC-------------CCChhHHHHHHHHHH--------------------HhhccccccHHHHHHHHHHHHHHhhCCC
Confidence 1110 011110011111100 0001111222233444566778888999
Q ss_pred EEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcC-CCCCcceeechhhh
Q 002419 656 VRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEAQFG 734 (925)
Q Consensus 656 v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~-~g~~~lviwEaqFg 734 (925)
+.+..-|+..-+-. .+.-...+. +++ +.|.+|.-|+|.+.++++.|+|+ .|.+|++ .-|.
T Consensus 375 lv~~sADl~~S~~~-------------~~~~~~~f~--~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~~---~tf~ 435 (663)
T PRK12753 375 LLGGSADLAPSNLT-------------IWSGSKSLK--EDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPYT---ATFL 435 (663)
T ss_pred eEEEccccccccCc-------------ccccccchh--hcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEEE---EehH
Confidence 99888898542110 000002233 334 45999999999999999999999 7889987 4566
Q ss_pred hhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CCC-CccCCCchhhhhhhccCCCCCcccCCCCchhccccccCe
Q 002419 735 DFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DGQ-GPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNW 811 (925)
Q Consensus 735 DF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G~-GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl 811 (925)
-|+.-|.++|- ..+- ...|+++..-| |. -|. ||.|- + +|-. ..+..+|+ |
T Consensus 436 ~F~~r~~~qir---~~a~----~~l~V~~v~thdg~~~G~DG~THq-~-iedl--------a~lR~iPn----------~ 488 (663)
T PRK12753 436 MFVEYARNAAR---MAAL----MKARQIMVYTHDSIGLGEDGPTHQ-P-VEQL--------ASLRLTPN----------F 488 (663)
T ss_pred HHHHHHHHHHH---HHHh----cCCCeEEEEeCCCcccCCCCcccc-c-HHHH--------HHHhcCCC----------C
Confidence 67655554443 2211 24688887555 44 244 89994 4 6643 34567885 9
Q ss_pred EEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCC-CCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCC
Q 002419 812 QIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECK-SNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEE 890 (925)
Q Consensus 812 ~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~-s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~ 890 (925)
.|+.|+++.+...+++.++.. .+.|+.+..++.=....... .+..++.. |. .||.|.+ .+.
T Consensus 489 ~v~~PaD~~E~~~~~~~al~~-~~gP~~irl~R~~~~~~~~~~~~~~~~~~-----------G~--~vl~~~~----~~~ 550 (663)
T PRK12753 489 STWRPCDQVEAAVAWKLAIER-HNGPTALILSRQNLAQQERTPEQVKNIAR-----------GG--YILKDSG----GKP 550 (663)
T ss_pred EEEccCCHHHHHHHHHHHHhc-CCCCEEEEecCCCCCCCCCcccchhhccC-----------Cc--EEEeccC----CCC
Confidence 999999999999999999972 26899887765421110000 00112221 32 4565532 112
Q ss_pred CccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 891 GIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 891 ~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
+-+|++||-.....+++.+.+-.-|
T Consensus 551 --dv~iia~Gs~v~~al~Aa~~L~~~g 575 (663)
T PRK12753 551 --DLILIATGSEVEITLQAAEKLTAEG 575 (663)
T ss_pred --CEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3599999999998888888775433
No 30
>PRK12754 transketolase; Reviewed
Probab=99.94 E-value=5.2e-24 Score=254.83 Aligned_cols=436 Identities=13% Similarity=0.115 Sum_probs=265.6
Q ss_pred ccccCCcccccceeehhhhhhhhhcCC--C---CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEE
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSND--M---DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d--~---~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~ 431 (925)
-...++||.++++|+|+|+|.++.+.. . .-.+..++|++|||+++ ||++|||+++| +||+ +|+||.
T Consensus 110 e~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~-EG~~~EA~~~A~~~kL~n-----Li~ivD 183 (663)
T PRK12754 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM-EGISHEVCSLAGTLKLGK-----LIAFYD 183 (663)
T ss_pred cccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhh-chHHHHHHHHHHHhCCCC-----EEEEEE
Confidence 345678999999999999999987521 0 11247899999999999 99999999999 9997 899999
Q ss_pred eCCcccccCCCCCcCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCC-CCCCC
Q 002419 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE-IDEPS 509 (925)
Q Consensus 432 NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne-~Ddp~ 509 (925)
||+++++++.+... ..++.+++++||+++++ |||+|++++.+|++.|.+ ..++|++|++.|+|.+|.+. .+.+.
T Consensus 184 ~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~e~~~~ 259 (663)
T PRK12754 184 DNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHD 259 (663)
T ss_pred cCCCccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCccccCCCcc
Confidence 99999999988776 57899999999999999 899999999988877653 25889999999999999862 23221
Q ss_pred ----CcCHHHHHHHHhCC-----------CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhh
Q 002419 510 ----FTQPKMYKIIRSHP-----------SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLS 574 (925)
Q Consensus 510 ----ytqp~ey~~i~~~~-----------dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~ 574 (925)
--.+++++..++.- ++...|++ .++|- +..+++.+.+++ .++..|....-++
T Consensus 260 ~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~--~~~~~-------~~~~~w~~~~~~----~~~~~p~~~~~~~ 326 (663)
T PRK12754 260 SHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDA--KEAGQ-------AKESAWNEKFAA----YAKAYPQEAAEFT 326 (663)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH--hhhch-------HHHHHHHHHHHH----HHHHCHHHHHHHH
Confidence 12445555543221 11122211 12221 111222222221 1111111111111
Q ss_pred hhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC
Q 002419 575 AYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGN 654 (925)
Q Consensus 575 ~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~ 654 (925)
..+.+. -| +.+.. .+......+ ++ ..+++.-..+-..++..+...++
T Consensus 327 ~~~~~~-~p--------~~~~~-~~~~~~~~~---~~--------------------~~~~~atR~~~~~~L~~la~~~~ 373 (663)
T PRK12754 327 RRMKGE-MP--------ADFDA-KAKEFIAKL---QA--------------------NPAKIASRKASQNAIEAFGPLLP 373 (663)
T ss_pred HHhcCC-Cc--------hhHHH-HHHHHhhhh---cc--------------------cccchHHHHHHHHHHHHHHhhCC
Confidence 111100 00 00000 000000000 00 00011111223345667778899
Q ss_pred cEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcC-CCCCcceeechhh
Q 002419 655 HVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEAQF 733 (925)
Q Consensus 655 ~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~-~g~~~lviwEaqF 733 (925)
++....-|....+... +.-+..+. +.+ +.|.+|.-|+|.+++|++.|+|+ .|.+|++--=+.|
T Consensus 374 ~lv~~sADl~~s~~~~-------------~~~~~~f~--~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F 437 (663)
T PRK12754 374 EFLGGSADLAPSNLTL-------------WSGSKAIN--EDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMF 437 (663)
T ss_pred CEEEEeCCcccccCcc-------------cccccccc--ccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHH
Confidence 9988888875432210 00012343 344 45999999999999999999999 6789988555555
Q ss_pred hhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CCC-CccCCCchhhhhhhccCCCCCcccCCCCchhccccccC
Q 002419 734 GDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DGQ-GPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN 810 (925)
Q Consensus 734 gDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G~-GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~N 810 (925)
.|++. .+|-+ ++ . .+.|+++..-| |. .|. ||.|-. +|-. ..+..+|+
T Consensus 438 ~~r~~---~qir~---~a-~---~~l~V~~v~th~gi~~G~DG~THq~--iEdl--------a~lR~iPn---------- 487 (663)
T PRK12754 438 VEYAR---NAVRM---AA-L---MKQRQVMVYTHDSIGLGEDGPTHQP--VEQV--------ASLRVTPN---------- 487 (663)
T ss_pred HHHHH---HHHHH---HH-H---cCCCeEEEEECCccccCCCCCCccc--HHHH--------HHHhcCCC----------
Confidence 55433 33321 11 1 24688777777 43 343 888854 6732 34567885
Q ss_pred eEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCC-cccccccCCCCCCCCCCCceeEeecCCCCCCCCC
Q 002419 811 WQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889 (925)
Q Consensus 811 l~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~-~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~ 889 (925)
|.|+.|+++.+...+++.++.. ...|+.+..++.-+........ ..++.. |. .||.+... +
T Consensus 488 ~~V~~PaD~~E~~~~~~~a~~~-~~gP~yirl~R~~~p~~~~~~~~~~~~~~-----------G~--~vl~~~~~----~ 549 (663)
T PRK12754 488 MSTWRPCDQVESAVAWKYGVER-QDGPTALILSRQNLAQQERTEEQLANIAR-----------GG--YVLKDCAG----Q 549 (663)
T ss_pred cEEecCCCHHHHHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCccchhhhccc-----------Cc--EEEEecCC----C
Confidence 9999999999999999999875 2478887665432211100000 011221 32 45655321 1
Q ss_pred CCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 890 EGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 890 ~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
. +-+|++||-.....+++.+.+-.-|
T Consensus 550 ~--dv~iiatGs~v~~Al~Aa~~L~~~G 575 (663)
T PRK12754 550 P--ELIFIATGSEVELAVAAYEKLTAEG 575 (663)
T ss_pred C--CEEEEEECHHHHHHHHHHHHHHhhC
Confidence 2 3499999999998888887775433
No 31
>PTZ00089 transketolase; Provisional
Probab=99.93 E-value=8.7e-24 Score=254.12 Aligned_cols=432 Identities=13% Similarity=0.141 Sum_probs=268.3
Q ss_pred ccccCCcccccceeehhhhhhhhhcCC-----CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEE
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSND-----MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d-----~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~ 431 (925)
-...+|+|.++++|+|+|+|.++.+.. .+..+..++|++|||+++ +|++||++|+| +||+ +|+||.
T Consensus 112 ~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~-eG~~~EAl~~A~~~~L~n-----Li~i~d 185 (661)
T PTZ00089 112 EVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQ-EGVSQEALSLAGHLGLEK-----LIVLYD 185 (661)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchh-hHHHHHHHHHHHHhCCCC-----EEEEEE
Confidence 345688999999999999999986531 012247899999999999 99999999999 9997 899999
Q ss_pred eCCcccccCCCCCcCcccHHHHHhhcCccEEEE-eCC-CHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC
Q 002419 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGD-DMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS 509 (925)
Q Consensus 432 NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~-D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ 509 (925)
||+++++++.... ...++.++.++||+.++.| ||+ |++++++|++.|.+. .++|++|++.|+|.+||.+.|...
T Consensus 186 ~N~~~i~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~ 261 (661)
T PTZ00089 186 DNKITIDGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEK 261 (661)
T ss_pred CCCcccccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCC
Confidence 9999999988765 3577899999999999999 999 999999999888753 268999999999999998777653
Q ss_pred ----CcCHHHHHHHHhC--CCHH----------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchh
Q 002419 510 ----FTQPKMYKIIRSH--PSSL----------EIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWL 573 (925)
Q Consensus 510 ----ytqp~ey~~i~~~--~dpi----------~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~ 573 (925)
...++++++.++. .||. ..|+. ..+++ ....+++.+.+.+ ..+..|.....+
T Consensus 262 ~H~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~-~~~~~-------~~~~~~w~~~~~~----~~~~~~~~~~~l 329 (661)
T PTZ00089 262 VHGAPLGDEDIAQVKELFGLDPEKKFHVSEEVRQFFEQ-HVEKK-------KENYEAWKKRFAK----YTAAFPKEAQAI 329 (661)
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhhh-------HHHHHHHHHHHHH----HHHHCHHHHHHH
Confidence 3455666665431 1111 11111 00000 0111122222221 111111110001
Q ss_pred hhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC
Q 002419 574 SAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEG 653 (925)
Q Consensus 574 ~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~ 653 (925)
.....+ .+|+++. ..+.+. . +.++++.-..+-..++..+....
T Consensus 330 ~~~~~~----------------------------~~~~~~~--~~~~~~-~------~~~~~~a~R~~~g~~L~~la~~~ 372 (661)
T PTZ00089 330 ERRFKG----------------------------ELPPGWE--KKLPKY-T------TNDKAIATRKASENVLNPLFQIL 372 (661)
T ss_pred HHHhcc----------------------------CCchhhh--hhhhhh-c------ccCcchHHHHHHHHHHHHHHhhC
Confidence 100000 0111110 000000 0 00001111122233455666677
Q ss_pred CcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcC-CCCCcceeechh
Q 002419 654 NHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSM-ENPNSLVMWEAQ 732 (925)
Q Consensus 654 ~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~-~g~~~lviwEaq 732 (925)
+.+...--|+...|... .+. ...+. +.+...|.+|.-|+|.+.++++.|+|+ .|.+|++ +.
T Consensus 373 ~~~~~~saDl~~s~~~~-------~~~------~~~f~--~~~P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P~~---~t 434 (661)
T PTZ00089 373 PELIGGSADLTPSNLTR-------PKE------ANDFT--KASPEGRYIRFGVREHAMCAIMNGIAAHGGFIPFG---AT 434 (661)
T ss_pred CCeEEEECCCCcccCcC-------Ccc------ccccc--ccCCCCCeeeeeecHHHHHHHHHHHHHcCCCeEEE---Ee
Confidence 88876667775433211 000 01233 334226899999999999999999999 8889988 56
Q ss_pred hhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc---cCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhcccccc
Q 002419 733 FGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH---GYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQEC 809 (925)
Q Consensus 733 FgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh---G~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~ 809 (925)
|.-|+.-|. || |--.. .+..|+++..-| |+..-||.|-. +|-. ..+..+|+
T Consensus 435 f~~Fl~Ra~---dq-ir~~a---l~~lpV~~v~thdg~~~g~DG~THq~--iedi--------a~lR~iPn--------- 488 (661)
T PTZ00089 435 FLNFYGYAL---GA-VRLAA---LSHHPVIYVATHDSIGLGEDGPTHQP--VETL--------ALLRATPN--------- 488 (661)
T ss_pred hHHHHHHHH---HH-HHHHH---hcCCCeEEEEeCCceecCCCCCCccc--HHHH--------HHHhcCCC---------
Confidence 777766555 44 21111 134788888755 33334899965 5532 34557885
Q ss_pred CeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCC
Q 002419 810 NWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889 (925)
Q Consensus 810 Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~ 889 (925)
|.|+.|+++.++..+|+.++.. .+.|+.+..|+.=...-. ..+ .+|. .++ ..||.+.. .
T Consensus 489 -~~V~~PaD~~E~~~~l~~al~~-~~gP~~irl~R~~~~~~~-~~~-~~~~----------~~g--~~vl~~~~-----~ 547 (661)
T PTZ00089 489 -LLVIRPADGTETSGAYALALAN-AKTPTILCLSRQNTPPLP-GSS-IEGV----------LKG--AYIVVDFT-----N 547 (661)
T ss_pred -cEEEecCCHHHHHHHHHHHHHc-CCCCEEEEecCCCCCCcC-CCc-cccc----------cCc--eEEEeccC-----C
Confidence 9999999999999999999843 368999987754211000 000 1111 112 12555421 0
Q ss_pred CCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 890 EGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 890 ~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
.-+-+|+++|-.....+++.+.+.+ |
T Consensus 548 -~~dv~iia~G~~v~~Al~Aa~~L~~-G 573 (661)
T PTZ00089 548 -SPQLILVASGSEVSLCVEAAKALSK-E 573 (661)
T ss_pred -CCCEEEEeeCHHHHHHHHHHHHHhc-C
Confidence 1245999999999999999888876 5
No 32
>PLN02790 transketolase
Probab=99.93 E-value=1.2e-23 Score=252.54 Aligned_cols=435 Identities=14% Similarity=0.148 Sum_probs=263.9
Q ss_pred eccccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEE
Q 002419 359 LVANPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIV 430 (925)
Q Consensus 359 l~~npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV 430 (925)
+....+|+|.++++|+|+|+|.++... +....+..++|++|||+++ +|++||+||+| +||+ +|+||
T Consensus 100 i~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~-eG~~~EAl~~A~~~~L~n-----li~i~ 173 (654)
T PLN02790 100 IEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQM-EGISNEAASLAGHWGLGK-----LIVLY 173 (654)
T ss_pred ccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCccc-chHHHHHHHHHHHhCCCC-----EEEEE
Confidence 345568999999999999999996421 1111247899999999999 99999999999 9997 99999
Q ss_pred EeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeC--CCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCC-CC
Q 002419 431 VNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNG--DDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI-DE 507 (925)
Q Consensus 431 ~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG--~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~-Dd 507 (925)
+||+++++++..... ..++.+++++||++++.||| +|++++++|++.|.+ ..++|++|++.|++.+|.... +.
T Consensus 174 d~N~~~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~---~~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 174 DDNHISIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKA---VTDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred ecCCccccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCeEEEEEEEeecCCCccccCC
Confidence 999999999887543 56788999999999999988 799999998877754 267999999999999998632 22
Q ss_pred CCC--c--CHHHHHHHHh----CCCHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccch
Q 002419 508 PSF--T--QPKMYKIIRS----HPSSLE-------IYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDW 572 (925)
Q Consensus 508 p~y--t--qp~ey~~i~~----~~dpi~-------~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~ 572 (925)
..+ . .++++++.++ +.+|.. .|.+ ..+.|- ...+++.+.+.+ .....|.....
T Consensus 250 ~~~H~~~~~~~~~~~~~~~l~~~~~~F~~~~~~~~~~~~-~~~~~~-------~~~~~w~~~~~~----~~~~~~~~~~~ 317 (654)
T PLN02790 250 YSVHGAALGEKEVDATRKNLGWPYEPFHVPEDVKSHWSK-HTKEGA-------ALEAEWNAKFAE----YKKKYPEEAAE 317 (654)
T ss_pred CCcCCCCCCHHHHHHHHHHhCCCCCCCcCCHHHHHHHHH-HHhhhh-------hhHHHHHHHHHH----HHhhCHHHHHH
Confidence 222 1 2334433221 111110 0110 001110 011111111111 11111110000
Q ss_pred hhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc
Q 002419 573 LSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVE 652 (925)
Q Consensus 573 ~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~ 652 (925)
+...++. ..+.+. . ..+..+++. .+ ....| .+-..++..+...
T Consensus 318 ~~~~~~~-------------~~~~~~-~---~~~~~~~~~---~~----~~a~R-------------~~~~~~l~~i~~~ 360 (654)
T PLN02790 318 LKSLISG-------------ELPSGW-E---KALPTFTPE---DP----ADATR-------------NLSQKCLNALAKV 360 (654)
T ss_pred HHHHhcc-------------CCchhh-h---hhhhhhccc---Cc----chHHH-------------HHHHHHHHHHHhh
Confidence 1111100 000000 0 000000000 00 00111 1222345556667
Q ss_pred CCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCC--CCCcceeec
Q 002419 653 GNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME--NPNSLVMWE 730 (925)
Q Consensus 653 ~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~--g~~~lviwE 730 (925)
.++++..--|+...+-. ....+..+. +++-+.|.+|.-|+|.++++++.|+|+. |.+|++--=
T Consensus 361 ~p~iv~gsaDl~~s~~t-------------~~~~~~~f~--~~~~p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~~tf 425 (654)
T PLN02790 361 LPGLIGGSADLASSNMT-------------LLKDFGDFQ--KDTPEERNVRFGVREHGMGAICNGIALHSSGLIPYCATF 425 (654)
T ss_pred CCCeEEEECCCCccccc-------------ccccchhhh--hcCCCCCeEEeeechHHHHHHHHHHHhcCCCcEEEEEec
Confidence 78887666677432110 001123454 4433679999999999999999999995 699999777
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhcccc
Q 002419 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQ 807 (925)
Q Consensus 731 aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~ 807 (925)
++|.||...+. ..+ + .+..|+++..-| |. .| -||.|-. +|-. ..+..+|+
T Consensus 426 ~~F~~~~~~~i-----r~~-a----l~~lpV~~v~thdg~~~G~DG~THq~--iedl--------a~lR~iPn------- 478 (654)
T PLN02790 426 FVFTDYMRAAM-----RLS-A----LSEAGVIYVMTHDSIGLGEDGPTHQP--IEHL--------ASLRAMPN------- 478 (654)
T ss_pred HHHHHHHHHHH-----HHH-H----hcCCCeEEEEECCceeecCCCCCccc--HHHH--------HHhcCCCC-------
Confidence 77777655432 111 1 124789988877 33 34 4898865 6642 34567885
Q ss_pred ccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCC
Q 002419 808 ECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSD 887 (925)
Q Consensus 808 ~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~ 887 (925)
|.|+.|+++.+...+|+.++.. ...|+.+..|+.=...- ...+.++|.. |. .+|.+.+.
T Consensus 479 ---l~V~~PaD~~E~~~~l~~al~~-~~gP~~irl~R~~~~~~-~~~~~~~~~~-----------G~--~vl~~~~~--- 537 (654)
T PLN02790 479 ---ILMLRPADGNETAGAYKVAVTN-RKRPTVLALSRQKVPNL-PGTSIEGVEK-----------GG--YVISDNSS--- 537 (654)
T ss_pred ---cEEEeCCCHHHHHHHHHHHHHc-CCCCEEEEecCCCCCCC-CCCccccccc-----------Cc--EEEEeCCC---
Confidence 9999999999999999999862 26899998886532110 0011122322 32 45554310
Q ss_pred CCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 888 LEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 888 ~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
..+-+-+|+++|-.....+++.+.+..-
T Consensus 538 -~~~~dv~iia~G~~v~~Al~Aa~~L~~~ 565 (654)
T PLN02790 538 -GNKPDLILIGTGSELEIAAKAAKELRKE 565 (654)
T ss_pred -CCCCCEEEEEcCHHHHHHHHHHHHHHhc
Confidence 0012359999999999888888877643
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=99.92 E-value=3.4e-25 Score=225.95 Aligned_cols=177 Identities=24% Similarity=0.264 Sum_probs=148.2
Q ss_pred CCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHH
Q 002419 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (925)
Q Consensus 634 ~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG 713 (925)
++++|..|.+.|+.++++++++|++.|+|++.|+|.. + .++. ..+|+.|++|++|+|.+++|
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~~~~~~~---------~-------~~~~--~~~~~~r~i~~gIaE~~~vg 62 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLGGGTFGV---------T-------FGLA--FPFGPGRFINTGIAEQNMVG 62 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTHHHHTST---------T-------TTHH--BHHTTTTEEE--S-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcCcchhhh---------h-------hhcc--ccCCCceEEecCcchhhccc
Confidence 3689999999999999999999999999999999988 3 6666 66778899999999999999
Q ss_pred HHhhhcCCCC-CcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCccCCCchhhhhhhccCCCC
Q 002419 714 FELGYSMENP-NSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNP 792 (925)
Q Consensus 714 ~~~G~s~~g~-~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~ 792 (925)
++.|+|+.|. ++ +||.||++|+..||......+......++..++++++.|.|+.+.|+.|.+...+.+|
T Consensus 63 ~a~GlA~~G~~~~--~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~------- 133 (178)
T PF02779_consen 63 MAAGLALAGGLRP--PVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTRAGLGYGGDGGTHHSIEDEAIL------- 133 (178)
T ss_dssp HHHHHHHHSSSEE--EEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEEESGGGSTTGTTTSSSSHHHHH-------
T ss_pred eeeeeeecccccc--eeEeeccccccccchhhhhhhhhhhhcccceecceeecCccccccccccccccccccc-------
Confidence 9999999995 66 5699999999988666655565566777777778889999888888888666577764
Q ss_pred CcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCC
Q 002419 793 YVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 793 ~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~ 850 (925)
.++|| |+|++|+||+|++++||.+++++.++|++|++||.+|+|+
T Consensus 134 ---~~iPg----------~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r~~~~~~ 178 (178)
T PF02779_consen 134 ---RSIPG----------MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPRGLYPHQ 178 (178)
T ss_dssp ---HTSTT----------EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEESSEES-T
T ss_pred ---ccccc----------cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeHHhCCCC
Confidence 47887 9999999999999999999996669999999999999986
No 34
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=1.1e-23 Score=250.54 Aligned_cols=348 Identities=13% Similarity=0.109 Sum_probs=245.2
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT 439 (925)
.+|-++.++.|+|+|.|+.+++.+ .-+|+++||||++ -|..+|+||-+ +-+ +|.|+.+|+++|+.
T Consensus 188 ~GHssTSiSaalG~a~ardl~g~~-----~~vvaVIGDGalt-gGma~EaLN~~g~~~~~------livILNDN~mSi~~ 255 (701)
T PLN02225 188 TGHGCNSISAGLGLAVARDIKGKR-----DRVVAVIDNATIT-AGQAYEAMSNAGYLDSN------MIVILNDSRHSLHP 255 (701)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCC-----CcEEEEEcCcchh-hhhHHHHHhhhhccCCC------EEEEEeCCCCCCCC
Confidence 378999999999999999987765 6789999999999 99999999999 444 99999999999987
Q ss_pred CCCC---------------CcCcc---------------------cH----H------------HHHhhcCccEE-EEeC
Q 002419 440 DPMS---------------GRSSQ---------------------YC----T------------DVAKALDAPIF-HVNG 466 (925)
Q Consensus 440 ~~~~---------------~rss~---------------------~~----~------------d~Aka~giP~~-~VdG 466 (925)
+.+. -++++ .. . .+.+.+|+..+ -|||
T Consensus 256 n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDG 335 (701)
T PLN02225 256 NMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDG 335 (701)
T ss_pred CCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCC
Confidence 7100 00000 00 0 12344555555 5899
Q ss_pred CCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Q 002419 467 DDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINK 546 (925)
Q Consensus 467 ~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~ 546 (925)
+|++++..+.+.+.+. ...+||||+++|-. |+
T Consensus 336 Hdi~~Li~~l~~~k~~--~~~~PvlvHv~T~K--Gk-------------------------------------------- 367 (701)
T PLN02225 336 HNIEDLVCVLREVSSL--DSMGPVLVHVITEE--NR-------------------------------------------- 367 (701)
T ss_pred CCHHHHHHHHHHHHcC--CCCCCEEEEEEecC--CC--------------------------------------------
Confidence 9999999987777642 12389999999833 21
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHH
Q 002419 547 IQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELR 626 (925)
Q Consensus 547 i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R 626 (925)
. ++ ||-...
T Consensus 368 -------------------d--~~---------------------tg~~~~----------------------------- 376 (701)
T PLN02225 368 -------------------D--AE---------------------TGKNIM----------------------------- 376 (701)
T ss_pred -------------------C--CC---------------------CCCcCC-----------------------------
Confidence 0 00 110000
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCc
Q 002419 627 AQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSL 706 (925)
Q Consensus 627 ~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspL 706 (925)
......|..+-..++..++.++++|++.+.|...||.- ..+. ++| |.|++|++|
T Consensus 377 -----~~~~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtgl------------------~~f~--~~f-PdRffDvGI 430 (701)
T PLN02225 377 -----VKDRRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDASL------------------ITFQ--ERF-PDRFFNVGM 430 (701)
T ss_pred -----CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcccH------------------HHHH--HHc-cccccccCc
Confidence 00013466667778888999999999999998655532 5677 788 899999999
Q ss_pred chHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCC-CCccCCCchhhhhh
Q 002419 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDG-QGPEHSSARLERFL 785 (925)
Q Consensus 707 SE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G-~GpeHSs~R~ErfL 785 (925)
+|..++||+.|+|+.|.+|++ +++ .+|+.-|.+||-+-++ +......+++.- .|+.| .||.|++. .
T Consensus 431 AEQhaVt~AAGLA~~G~kPvv--~iy-stFlqRAyDQI~~Dva----l~~lpV~~vid~-aGlvg~DG~TH~g~-~---- 497 (701)
T PLN02225 431 AEQHAVTFSAGLSSGGLKPFC--IIP-SAFLQRAYDQVVHDVD----RQRKAVRFVITS-AGLVGSDGPVQCGA-F---- 497 (701)
T ss_pred cHHHHHHHHHHHHHCCCEEEE--Eee-hhHHHHHHHHHHHHHH----hhcCCceEEEEC-CccCCCCCcccccc-H----
Confidence 999999999999999999988 765 7999888866655443 222344555443 36655 59999998 2
Q ss_pred hccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCC-CCCCCcccccccCC
Q 002419 786 QMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHK-ECKSNLSEFDDVQG 864 (925)
Q Consensus 786 ql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~-~~~s~~~~~~~~~~ 864 (925)
|..++.++|| |+|+.|+++.++.++|+.++.. .+.|++|..||..+... .....-..+.
T Consensus 498 -----Dia~lr~IPn----------m~V~aPsD~~El~~mL~~A~~~-~~gPv~IR~pRg~~~~~~~~~~~~~~~~---- 557 (701)
T PLN02225 498 -----DIAFMSSLPN----------MIAMAPADEDELVNMVATAAYV-TDRPVCFRFPRGSIVNMNYLVPTGLPIE---- 557 (701)
T ss_pred -----HHHHHhcCCC----------CEEEeeCCHHHHHHHHHHHHhc-CCCCEEEEecccccCCCCcCCCCCcccc----
Confidence 2245678997 9999999999999999998843 26899999999865321 1001001111
Q ss_pred CCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 865 HPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 865 ~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
-|.- .|+.+. + +-.|+++|...+..+++.+.+..-|
T Consensus 558 -------iGK~-~vlreG-------~--dvtIia~G~mv~~Al~AA~~L~~~G 593 (701)
T PLN02225 558 -------IGRG-RVLVEG-------Q--DVALLGYGAMVQNCLHAHSLLSKLG 593 (701)
T ss_pred -------Ccce-EEEEeC-------C--CEEEEeccHHHHHHHHHHHHHHhcC
Confidence 1221 244332 2 2489999999999988888775433
No 35
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=99.90 E-value=4.6e-23 Score=231.33 Aligned_cols=219 Identities=19% Similarity=0.230 Sum_probs=174.2
Q ss_pred CccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHH
Q 002419 635 GIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (925)
Q Consensus 635 ~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ail 712 (925)
.++|..+-..++..++.++++|.+.|+|++. |+|.. + +++. ++||+.|++|++|+|.+++
T Consensus 34 ~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~---------~-------~~f~--~~fgP~R~id~GIaEq~~v 95 (355)
T PTZ00182 34 KMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKC---------T-------KGLL--DKYGPDRVFDTPITEQGFA 95 (355)
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhh---------h-------HHHH--HHhCCCceeecCccHHHHH
Confidence 3678888999999999999999999999973 56766 3 7899 8999999999999999999
Q ss_pred HHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhh--CCcCCcEEEcCccCC-CCCccCCCchhhhhhhccC
Q 002419 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW--LRQSGLVVMLPHGYD-GQGPEHSSARLERFLQMSD 789 (925)
Q Consensus 713 G~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw--~~~~~lv~~lPhG~~-G~GpeHSs~R~ErfLql~~ 789 (925)
|++.|+|+.|.+|++ ++||+||...|.+||-+.++....+. +...|+|++.|+|.. +.||+||++ +|.+|
T Consensus 96 g~AaGlA~~G~~Pvv--~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~-~ea~l---- 168 (355)
T PTZ00182 96 GFAIGAAMNGLRPIA--EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS-FEAYF---- 168 (355)
T ss_pred HHHHHHHhCCCEEEE--EechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch-HHHHH----
Confidence 999999999999977 99999999888866655554332222 246899999998774 569999998 88764
Q ss_pred CCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCC
Q 002419 790 DNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFD 869 (925)
Q Consensus 790 ~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~ 869 (925)
.++|| |+|++|++|.|++++|+.++.. ++|++|++||.|+|.+....+.+++.-
T Consensus 169 ------r~iPn----------~~V~~Psd~~e~~~~l~~a~~~--~~P~~i~~p~~l~r~~~~~~~~~~~~~-------- 222 (355)
T PTZ00182 169 ------AHVPG----------LKVVAPSDPEDAKGLLKAAIRD--PNPVVFFEPKLLYRESVEVVPEADYTL-------- 222 (355)
T ss_pred ------hcCCC----------CEEEeeCCHHHHHHHHHHHHhC--CCcEEEEeehHHhCCCCCCCCcccccc--------
Confidence 58886 9999999999999999999986 899999999999987543222111210
Q ss_pred CCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 870 KQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 870 ~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
+-|..+ |+.+ .-+.+|+|+|..+...+++.+.+..
T Consensus 223 -~~Gk~~-vl~~---------G~di~Iia~Gs~~~~aleAa~~L~~ 257 (355)
T PTZ00182 223 -PLGKAK-VVRE---------GKDVTIVGYGSQVHVALKAAEELAK 257 (355)
T ss_pred -cCCcce-EecC---------CCCEEEEEeCHHHHHHHHHHHHHHh
Confidence 112221 2222 2356999999999999999988753
No 36
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.89 E-value=8.4e-23 Score=235.72 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=179.2
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG 713 (925)
+.+..+...|+..+|.++++|++.|+|+.. |.|+. | ++|. ++||+.|++|+||+|.+++|
T Consensus 142 ~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~---------t-------~~l~--~~fgp~R~id~gIaEq~~vg 203 (464)
T PRK11892 142 MTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKV---------T-------QGLL--QEFGARRVIDTPITEHGFAG 203 (464)
T ss_pred hHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCcccc---------c-------hHHH--HHhCccceeecCccHHHHHH
Confidence 345567778899999999999999999975 77877 5 7888 89999999999999999999
Q ss_pred HHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCC--cCCcEEEcCccC-CCCCccCCCchhhhhhhccCC
Q 002419 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDD 790 (925)
Q Consensus 714 ~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~--~~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~~~ 790 (925)
++.|+|+.|.+|+| |.|+.+|+.-|.+||-+.+++..++++. .+|+|++.|+|. .+.|++||++ ...
T Consensus 204 ~AaGlA~~G~rPiv--~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~-d~a------- 273 (464)
T PRK11892 204 IGVGAAFAGLKPIV--EFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQD-YAA------- 273 (464)
T ss_pred HHHHHHhCCCEEEE--EEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccC-HHH-------
Confidence 99999999999988 9999999999998888777766666654 589999999976 6789999998 444
Q ss_pred CCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCC
Q 002419 791 NPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDK 870 (925)
Q Consensus 791 ~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~ 870 (925)
++.++|| |+|++|+||+|++++|+.+++. ++|++|+++|.+|+.+..+..++++.-
T Consensus 274 ---~~~~iPg----------l~V~~P~d~~d~~~ll~~ai~~--~~Pv~ile~~~ry~~~~~vp~~~~~~~--------- 329 (464)
T PRK11892 274 ---WYSHIPG----------LKVVAPYSAADAKGLLKAAIRD--PNPVIFLENEILYGQSFDVPKLDDFVL--------- 329 (464)
T ss_pred ---HHhhCCC----------CEEEEeCCHHHHHHHHHHHhhC--CCcEEEEechhhcCCCCCCCCcCCccc---------
Confidence 5779998 9999999999999999999977 899999999999986533333444431
Q ss_pred CCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 871 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 871 ~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
|-|..+ |+.+. + +-.|+++|-..+..+++.+.+..-|
T Consensus 330 ~~Gka~-v~r~G-------~--DvtIva~G~~v~~Al~Aa~~L~~~G 366 (464)
T PRK11892 330 PIGKAR-IHREG-------K--DVTIVSFSIGMTYALKAAEELAKEG 366 (464)
T ss_pred cCceEE-EEEcC-------C--CEEEEEccHHHHHHHHHHHHHHhcC
Confidence 224333 33321 2 3589999999888888888775444
No 37
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=99.88 E-value=4.2e-22 Score=221.49 Aligned_cols=219 Identities=20% Similarity=0.190 Sum_probs=176.5
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG 713 (925)
+....|...++..++.++++|.+.|+|++. |.|+. | +++. ++|+..|++|++|+|..++|
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~---------~-------~~f~--~~fp~~R~~n~gIaEq~~vg 65 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKV---------T-------KGLH--EKYGDLRVLDTPIAENSFTG 65 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhH---------H-------HHHH--HHCCCccEeeccccHHHHHH
Confidence 445667888899999999999999999985 55766 3 7888 88977799999999999999
Q ss_pred HHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCC--cCCcEEEcCccC-CCCCccCCCchhhhhhhccCC
Q 002419 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDD 790 (925)
Q Consensus 714 ~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~--~~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~~~ 790 (925)
++.|+|+.|.+|++ +.+|.+|..-|.+||-+.++...++++. ..|+|++.|.|. .+.|++||++ +|.+
T Consensus 66 ~AaGlA~~G~~pvv--~~~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~-~ea~------ 136 (327)
T CHL00144 66 MAIGAAMTGLRPIV--EGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQR-LESY------ 136 (327)
T ss_pred HHHHHHHCCCEEEE--EeehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCcccccc-HHHH------
Confidence 99999999999999 9999999999998888777766666665 478999988544 4689999999 8876
Q ss_pred CCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCC
Q 002419 791 NPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDK 870 (925)
Q Consensus 791 ~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~ 870 (925)
+.++|| |+|++||+|.|++++|+++++. ++|++|++||.||+.+.. .+-+++.-
T Consensus 137 ----~~~iPg----------l~V~~Psd~~d~~~~l~~a~~~--~~Pv~ire~~~l~~~~~~-v~~~~~~~--------- 190 (327)
T CHL00144 137 ----FQSVPG----------LQIVACSTPYNAKGLLKSAIRS--NNPVIFFEHVLLYNLKEE-IPDNEYLL--------- 190 (327)
T ss_pred ----HhcCCC----------CEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEcHHhcCCCCC-CCCCCccc---------
Confidence 569997 9999999999999999999986 899999999999986532 22222211
Q ss_pred CCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 871 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 871 ~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
|-|.. .|+.+. + +-.|+++|-..+..+++.+.+..-|
T Consensus 191 ~~Gk~-~v~~~G-------~--ditiia~G~~v~~al~Aa~~L~~~G 227 (327)
T CHL00144 191 PLEKA-EVVRPG-------N--DITILTYSRMRHHVLQAVKVLVEKG 227 (327)
T ss_pred cCCee-EEEEcC-------C--CEEEEEccHHHHHHHHHHHHHHhcC
Confidence 11222 233322 2 3589999999999999888876544
No 38
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=99.88 E-value=1.3e-22 Score=205.57 Aligned_cols=161 Identities=23% Similarity=0.316 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhh
Q 002419 641 GEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGY 718 (925)
Q Consensus 641 aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~ 718 (925)
|.+.++.+++.++++|++.|+|+.. |.|.. | +++. ++|+..|++|++|+|..++|++.|+
T Consensus 2 ~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~---------~-------~~~~--~~~p~~R~~~~gIaEq~~vg~AaGl 63 (167)
T cd07036 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKV---------T-------KGLL--DKFGPDRVIDTPIAEAGIVGLAVGA 63 (167)
T ss_pred HHHHHHHHHHhcCCCEEEECcccccCCCcchH---------h-------HHHH--HhCCCceEEeCCCcHHHHHHHHHHH
Confidence 4456778899999999999999975 44554 3 7898 8898789999999999999999999
Q ss_pred cCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhh--hCCcCCcEEEcCccC-CCCCccCCCchhhhhhhccCCCCCcc
Q 002419 719 SMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESK--WLRQSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDDNPYVI 795 (925)
Q Consensus 719 s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~k--w~~~~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~~~~~~~~ 795 (925)
|+.|.+|++ ++||++|+..|.+||-+-++....+ +....|++++.++|. .+.|++||.. .+++|+
T Consensus 64 A~~G~~pi~--~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~-~~a~lr--------- 131 (167)
T cd07036 64 AMNGLRPIV--EIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQS-LEAWFA--------- 131 (167)
T ss_pred HHcCCEEEE--EeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhh-HHHHHh---------
Confidence 999998855 9999999988776554444332221 224689999999966 5579999987 777754
Q ss_pred cCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecc
Q 002419 796 PEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPK 844 (925)
Q Consensus 796 ~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK 844 (925)
++|| |+|++||+|.|++++||++++. ++|+|++|||
T Consensus 132 -~iPg----------~~V~~Psd~~e~~~~l~~~~~~--~~P~~~~e~k 167 (167)
T cd07036 132 -HIPG----------LKVVAPSTPYDAKGLLKAAIRD--DDPVIFLEHK 167 (167)
T ss_pred -cCCC----------CEEEeeCCHHHHHHHHHHHHhC--CCcEEEEecC
Confidence 7887 9999999999999999999987 7999999998
No 39
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=99.88 E-value=4.6e-22 Score=221.25 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=178.5
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG 713 (925)
+.|..+...++.+++.++++|.+.|+|++. |.|+. | +++. ++||+.|++|++|+|.+++|
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~---------~-------~~~~--~~fgp~R~~d~gIaE~~~vg 65 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKV---------T-------QGLL--EQFGPKRVIDTPITEHGFAG 65 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchh---------h-------HHHH--HHhCCCceeecchhHHHHHH
Confidence 578889999999999999999999999975 77887 5 7899 89999999999999999999
Q ss_pred HHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCC--cCCcEEEcCccC-CCCCccCCCchhhhhhhccCC
Q 002419 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLR--QSGLVVMLPHGY-DGQGPEHSSARLERFLQMSDD 790 (925)
Q Consensus 714 ~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~--~~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~~~ 790 (925)
++.|+|+.|.+|+| ++|+.+|..-|.+||-+-++....+++. ..|+|++.|.|. .+.|++||++ +|.+
T Consensus 66 ~AaGlA~~G~~Piv--~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~-~ea~------ 136 (327)
T PRK09212 66 LAVGAAFAGLRPIV--EFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC-YAAW------ 136 (327)
T ss_pred HHHHHHHcCCeeEE--EeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC-HHHH------
Confidence 99999999999999 9999999999998887777665555553 589999999876 5679999999 8866
Q ss_pred CCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCC
Q 002419 791 NPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDK 870 (925)
Q Consensus 791 ~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~ 870 (925)
+.++|| |+|++|++|.|++++|+.+++. ++|++|++|+.+|..+... +-+++. .
T Consensus 137 ----~r~iP~----------l~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~~~~~~~~~~~~-~~~~~~---------~ 190 (327)
T PRK09212 137 ----YSHIPG----------LKVVAPYFAADCKGLLKTAIRD--PNPVIFLENEILYGHSHEV-PEEEES---------I 190 (327)
T ss_pred ----HhcCCC----------CEEEeeCCHHHHHHHHHHHHhC--CCcEEEEEchhhcCCCCCC-CCCCcc---------c
Confidence 568997 9999999999999999999976 8999999999998743211 111111 1
Q ss_pred CCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 871 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 871 ~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
|-|..+ |+.+. -+-+|+|.|-.++...++.+.+.+-|
T Consensus 191 ~~Gk~~-vl~~G---------~di~iva~G~~~~~a~eAa~~L~~~G 227 (327)
T PRK09212 191 PIGKAA-ILREG---------SDVTIVTFSIQVKLALEAAELLEKEG 227 (327)
T ss_pred cCCeeE-EEEeC---------CCEEEEEccHHHHHHHHHHHHHHhcC
Confidence 113222 33321 23599999999999999998886433
No 40
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=99.86 E-value=5.6e-21 Score=214.63 Aligned_cols=224 Identities=16% Similarity=0.158 Sum_probs=177.8
Q ss_pred CCccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHH
Q 002419 634 EGIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGV 711 (925)
Q Consensus 634 ~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ai 711 (925)
..+.|..+.+.|+.+++.++++|++.|+|++. |+|.. | +++. +++++.|++|++|+|..+
T Consensus 25 ~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~---------~-------~~l~--~~~~P~R~~d~GIAEq~~ 86 (356)
T PLN02683 25 KEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKI---------T-------KGLL--QKYGPDRVLDTPITEAGF 86 (356)
T ss_pred cccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccch---------h-------hhHH--HHhCCCcEEECchhHHHH
Confidence 34788999999999999999999999999975 67776 4 7888 889999999999999999
Q ss_pred HHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCc--CCcEEEcCccC-CCCCccCCCchhhhhhhcc
Q 002419 712 LGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ--SGLVVMLPHGY-DGQGPEHSSARLERFLQMS 788 (925)
Q Consensus 712 lG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~--~~lv~~lPhG~-~G~GpeHSs~R~ErfLql~ 788 (925)
+|++.|+|+.|.+|++ ++||.||..-|.+||-+-++...++++.+ .|++++.|+|. .|.|++||+. .+.+
T Consensus 87 vg~AaGlA~~G~~P~v--~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-~~a~---- 159 (356)
T PLN02683 87 TGIGVGAAYAGLKPVV--EFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-FAAW---- 159 (356)
T ss_pred HHHHHHHHHCCCEEEE--EEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC-HHHH----
Confidence 9999999999999998 99999999999988877776555555553 89999999987 6789999888 5554
Q ss_pred CCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCC
Q 002419 789 DDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGF 868 (925)
Q Consensus 789 ~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~ 868 (925)
+.++|| |+|+.|++|.|++++|+.++.. ++|++|.+||.+++...... ++-.+ +.+
T Consensus 160 ------lr~iPn----------l~V~~Pad~~e~~~~l~~a~~~--~gPv~ir~~~~~~~~~~~~~--~~~~~----~~~ 215 (356)
T PLN02683 160 ------YSSVPG----------LKVLAPYSSEDARGLLKAAIRD--PDPVVFLENELLYGESFPVS--AEVLD----SSF 215 (356)
T ss_pred ------HhcCCC----------CEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEehhhccCCCCCC--CCCCC----ccc
Confidence 568997 9999999999999999999976 79999999999998543221 11000 001
Q ss_pred CCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 869 DKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 869 ~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
..|=|.. .++.+ .+ +-+|+++|-.....+++.+.+.+-
T Consensus 216 ~~~~Gk~-~v~r~-------G~--dvtIia~G~~v~~Al~Aa~~L~~~ 253 (356)
T PLN02683 216 VLPIGKA-KIERE-------GK--DVTIVAFSKMVGYALKAAEILAKE 253 (356)
T ss_pred cccCCee-EEEEc-------CC--CEEEEEccHHHHHHHHHHHHHHhc
Confidence 1111222 23332 12 349999999999998888877543
No 41
>PRK05261 putative phosphoketolase; Provisional
Probab=99.79 E-value=1.3e-16 Score=192.21 Aligned_cols=515 Identities=15% Similarity=0.173 Sum_probs=276.2
Q ss_pred ccCccchHHHHHHHHHHHhhcCCC---c--EEEcCCccchHHHH-HHhcC-----CC--------HHHHHHHhcCCCCCC
Q 002419 265 LEGGETLIPGMKEMFDRAADLGVE---S--IVIGMPHRGRLNVL-GNVVR-----KP--------LRQIFSEFSGGTRPV 325 (925)
Q Consensus 265 ~eG~Ea~i~gl~~~l~~a~~~gv~---D--~vigm~HRgrln~L-a~vlg-----~p--------~~~ifaEf~G~~~~~ 325 (925)
+.|+=+..||+..+.-..-.+.-+ | +|+|+-|=+-+.+- ..+.| .| +..+|++|-- .
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~-p--- 123 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF-P--- 123 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC-C---
Confidence 478888887776654222111111 4 78888776655432 22345 22 4446777621 1
Q ss_pred CCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCC
Q 002419 326 DEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAG 405 (925)
Q Consensus 326 ~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sG 405 (925)
|| +..|.. . .++| +....+.||.++++|+|+|++.. +.+++|++|||++.
T Consensus 124 ------gg---~~sH~~--~--~tPG-------i~~~~G~LG~gls~A~G~Al~~~---------d~iv~~~vGDGE~E- 173 (785)
T PRK05261 124 ------GG---IPSHAA--P--ETPG-------SIHEGGELGYSLSHAYGAAFDNP---------DLIVACVVGDGEAE- 173 (785)
T ss_pred ------CC---cCCCCC--C--CCCC-------eeeCCCchhhHHHHHHHHHHcCC---------CCEEEEEECcCchh-
Confidence 11 225764 1 1221 34456789999999999997543 27999999999998
Q ss_pred cchH---HHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCc-ccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHH
Q 002419 406 QGVV---YETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSS-QYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAE 481 (925)
Q Consensus 406 qG~v---~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss-~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e 481 (925)
+|.+ +++.+++ -.++.|-++-|+.+|+|+++++...++.. ..+.+++++||++++.|||+|+++|+.++..|++
T Consensus 174 eG~lAa~W~~~~~~--~~~~~g~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~ 251 (785)
T PRK05261 174 TGPLATSWHSNKFL--NPATDGAVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALD 251 (785)
T ss_pred hhhhHHHhhhhhhc--ccccCCCEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHH
Confidence 9984 7877775 12233348889999999999999876543 6899999999999999999999999999887777
Q ss_pred HHHc-----------c---CCcE--EEEEEEeecCCCC-CCCCCCCcCHHHHHHHHhCCCH----------HHHHHHHHH
Q 002419 482 WRQT-----------F---HSDV--VVDLVCYRRFGHN-EIDEPSFTQPKMYKIIRSHPSS----------LEIYQNKLL 534 (925)
Q Consensus 482 ~rr~-----------~---~~Pv--lIe~~tYR~~GHn-e~Ddp~ytqp~ey~~i~~~~dp----------i~~y~~~Li 534 (925)
++-+ + .+|. +|.+.|---+|-- +.|.-.. .-.++.|.-| ++.+.++|.
T Consensus 252 ~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~kG~g~p~~~dg~~~-----eGs~raHqvPL~~~~~~~~~~~~L~~wl~ 326 (785)
T PRK05261 252 TAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPKGWTGPKEVDGKPI-----EGSWRAHQVPLANVRDNPEHLDLLEDWLR 326 (785)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCceEEEEECCccCCCCcccCCccc-----CCCchhhcCCCCCcccCHHHHHHHHHHhh
Confidence 5543 4 5899 9999998766622 1111000 0001112222 222333321
Q ss_pred HcCCCCHHHH----HHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCC
Q 002419 535 ECQHVTQEDI----NKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLP 610 (925)
Q Consensus 535 ~~Gi~t~ee~----~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P 610 (925)
..+ .+|+ .++..++++.+.+......+. |.... ...+..+.-| .++.. ++..-+
T Consensus 327 sy~---p~elF~~~g~l~~~~~~l~p~g~~r~~~~-P~ang--~~~~~~l~lp--------------~~~~~--~~~~~~ 384 (785)
T PRK05261 327 SYR---PEELFDEDGRLKPELAALAPKGDRRMGAN-PHANG--GLLLRDLRLP--------------DFRDY--AVPVGK 384 (785)
T ss_pred cCC---hhhhcCCCCchhHHHHHhccCchhhhcCC-chhcC--CcCccccCCC--------------chHhh--cccccC
Confidence 111 1111 112222222111111111111 10000 0000000000 00000 000000
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCc-EEEecccCCC-----cccccccceeeecCCCcee
Q 002419 611 ENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNH-VRLSGQDVER-----GTFSHRHSVLHDQETGEQY 684 (925)
Q Consensus 611 ~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~-v~l~GqDv~r-----GtF~~RHav~~dq~t~~~y 684 (925)
++.. ...+-.. --..+..++..+++ .|++|-|--. ++|.+ |++.|
T Consensus 385 ~g~~-------------------~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~---------t~r~~ 435 (785)
T PRK05261 385 PGAV-------------------MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEV---------TDRQW 435 (785)
T ss_pred CCcc-------------------ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhh---------hcccc
Confidence 0000 0000000 12245667788888 8999999642 77765 33322
Q ss_pred c----cC-CCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhH---hhHHHHHHHHH-Hhhhhhh
Q 002419 685 C----PL-DHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFA---NGAQVIFDQFV-NSGESKW 755 (925)
Q Consensus 685 ~----pL-~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~---~~aq~~idq~i-~~~~~kw 755 (925)
. |- ..+. . .-||+. .|||.++-|+.-||++.|..++. +-|--|+ -.+..|+--|+ .+.+..|
T Consensus 436 ~~~~~~~d~~~~----~-~Grvie-~LsEh~~~g~~~Gy~LtG~~~~~---~sYeaF~~ivd~m~~q~~kw~r~~~~~~w 506 (785)
T PRK05261 436 MAEILPYDEHLA----P-DGRVME-VLSEHLCEGWLEGYLLTGRHGFF---SSYEAFIHIVDSMFNQHAKWLKVAREIPW 506 (785)
T ss_pred ccccCCcccccC----C-CCCeee-eecHHHHHHHHHHHHhcCCCcce---ecHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1 10 0122 1 358999 99999999999999999998864 2333333 11111111111 1234445
Q ss_pred CC-cCCcEEEcCc-cCC--CCCccCCCch-hhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHH
Q 002419 756 LR-QSGLVVMLPH-GYD--GQGPEHSSAR-LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQI 830 (925)
Q Consensus 756 ~~-~~~lv~~lPh-G~~--G~GpeHSs~R-~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~ 830 (925)
.. -+.|.+++-| .++ --|+.|-.-- ||-++.+-+ .|++|.-|..+-.....++.++
T Consensus 507 r~~~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~~r~-------------------~~~rV~rPaDaNe~laa~~~al 567 (785)
T PRK05261 507 RKPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVANKKP-------------------DVIRVYLPPDANTLLAVADHCL 567 (785)
T ss_pred CCCCcceeEEeecceeecCCCCCCCCCchHHHHHHhcCC-------------------CcceEEeCCCHHHHHHHHHHHH
Confidence 44 3566666655 552 3477776521 343332222 3799999999888888888888
Q ss_pred hccCCCcEEEEecccccCCCCCCCC-cccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHH-HHH
Q 002419 831 HREFRKPLVVMSPKNLLRHKECKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSA-VCV 908 (925)
Q Consensus 831 ~~~~~~Pli~~~pK~Llr~~~~~s~-~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyyd-L~~ 908 (925)
++ -++|.+++.+|.=+..-...+. .+.... |-. |+...+. ....+-+-||+|||-.--- .++
T Consensus 568 ~s-~~~p~~IvlsRQ~lp~~~~~~~a~~~~~k-----------Gay--i~~~a~~--~~~~~pDvvL~atGsev~leAla 631 (785)
T PRK05261 568 RS-RNYINVIVAGKQPRPQWLSMDEARKHCTK-----------GLG--IWDWASN--DDGEEPDVVLACAGDVPTLETLA 631 (785)
T ss_pred Hh-CCCCEEEEEeCCCCcccCChHHHHHhccC-----------ceE--EEEeccC--CCCCCCCEEEEEeCcHhhHHHHH
Confidence 74 3689888888743311100000 112222 333 3332110 0111234599999985543 667
Q ss_pred HHHHhhh
Q 002419 909 ALYFFYN 915 (925)
Q Consensus 909 ~~~~~~~ 915 (925)
+.+.+..
T Consensus 632 Aa~~L~~ 638 (785)
T PRK05261 632 AADLLRE 638 (785)
T ss_pred HHHHHHh
Confidence 7666543
No 42
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.79 E-value=1.2e-16 Score=194.42 Aligned_cols=437 Identities=15% Similarity=0.182 Sum_probs=257.2
Q ss_pred ccCCcccccceeehhhhhhhhhcCC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcc
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g 436 (925)
..+.||.++++|+|+|+|.++.... ....+.-++|++|||.+. ||.+||++.+| +|.+ +|+||.+|.+.
T Consensus 187 sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~-EG~~wEA~~~Aa~~kLdN-----Li~IvD~N~~q 260 (889)
T TIGR03186 187 PTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMD-EPESIGALSLAARERLDN-----LVFVINCNLQR 260 (889)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCCC-----EEEEEeCCCCc
Confidence 3466999999999999998854321 123346799999999999 99999999999 9998 99999999999
Q ss_pred cccCCCCCcC-cccHHHHHhhcCccEEEE---------------------------------------------------
Q 002419 437 FTTDPMSGRS-SQYCTDVAKALDAPIFHV--------------------------------------------------- 464 (925)
Q Consensus 437 ~tT~~~~~rs-s~~~~d~Aka~giP~~~V--------------------------------------------------- 464 (925)
+..+.+..-. ...+.++.+++|+.+++|
T Consensus 261 lDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~ 340 (889)
T TIGR03186 261 LDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPA 340 (889)
T ss_pred cCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHH
Confidence 9988775322 467899999999999999
Q ss_pred ------------------eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC--CcC-HHHHHHHHhCC
Q 002419 465 ------------------NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS--FTQ-PKMYKIIRSHP 523 (925)
Q Consensus 465 ------------------dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~--ytq-p~ey~~i~~~~ 523 (925)
+|+|+++|++|.+.|++ ..++|++|.+.|..-+|-+..-+.. .-+ .. -..
T Consensus 341 ~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PTvIla~TvkG~G~~~~g~~~~~~H~~~~------l~~ 411 (889)
T TIGR03186 341 LAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPTVILAKTMKGFGMGAIGQGRMTTHQQKK------LDV 411 (889)
T ss_pred HHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCCcccCccccccCcCc------CCH
Confidence 69999999999998875 2368999999999988864432211 101 00 011
Q ss_pred CHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHH
Q 002419 524 SSLEIYQNKLLECQH-VTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNV 602 (925)
Q Consensus 524 dpi~~y~~~Li~~Gi-~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i 602 (925)
+.++.+++++ |+ +++++++. .+|..|.+ +...++.+
T Consensus 412 e~~~~~r~~~---g~~~~de~~~~-------------------------------~~~~~~~~---------~s~~~~~l 448 (889)
T TIGR03186 412 EALLAFRDRF---RLPLSDADVEQ-------------------------------LKFYKPDE---------DSAEMRYL 448 (889)
T ss_pred HHHHHHHHHc---CCCCChHHhhc-------------------------------ccccCCCC---------CCHHHHHH
Confidence 2233333333 21 33333332 11100000 00001111
Q ss_pred Hhh---hh-cCCCCCC------cchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHH----HHc---CCcEEEecccCCC
Q 002419 603 GKA---IT-TLPENFK------PHRGVKKVYELRAQMIETGEGIDWALGEALAFATL----LVE---GNHVRLSGQDVER 665 (925)
Q Consensus 603 ~~~---~~-~~P~~f~------~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~l----l~~---~~~v~l~GqDv~r 665 (925)
.+. +. .+|..-. ..|.+. .+..=.+ -.+++.+ +=.+||+.+ +.. +++|+-.--|+.|
T Consensus 449 ~~~r~~l~g~~p~r~~~~~~~~~~p~~~-~~~~~~~-~~~~~~~----sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~ 522 (889)
T TIGR03186 449 HARRAALGGYLPRRRTAATHALAVPALP-SWGRFAL-DAEGKEM----STTMAIVRMLGALLKDAELGPRIVPIVADEAR 522 (889)
T ss_pred HHHHHHcCCCCCCCCCCCccccCCCCcc-hhhhhhc-cCCCCcc----cHHHHHHHHHHHHHhCccccCCEEEeCCcccc
Confidence 100 00 0010000 001100 0000000 0011212 223444444 332 5678888888875
Q ss_pred -----------cccccccceeeecCCCceeccCCC--ccccCCCcceEEEcCCcchHHHHH--HHhhhcCC----CCCcc
Q 002419 666 -----------GTFSHRHSVLHDQETGEQYCPLDH--VMMNQDAEMFTVSNSSLSEFGVLG--FELGYSME----NPNSL 726 (925)
Q Consensus 666 -----------GtF~~RHav~~dq~t~~~y~pL~~--l~~~~~~g~~rV~nspLSE~ailG--~~~G~s~~----g~~~l 726 (925)
|.|+. .|..|+|-.. +..=.+.-+.|++|.-|+|...+| .+.|.|++ +..|+
T Consensus 523 t~gm~~~f~~~gi~~~---------~gq~y~~~d~~~~~~y~e~~p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf 593 (889)
T TIGR03186 523 TFGMANLFRQVGIYSP---------LGQRYEPEDLGSMLYYREDTDGQILEEGISEAGAISSWIAAATSYSVHDLPMLPF 593 (889)
T ss_pred cCCchhhhccccccCc---------ccccCCccchHHHHHHhhcCCCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEE
Confidence 55665 6777888542 110012247899999999999999 88887776 66999
Q ss_pred eeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEE-cCccC---CCCCccCCCchhhhhhhccCCCCCcccCCCCch
Q 002419 727 VMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVM-LPHGY---DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTL 802 (925)
Q Consensus 727 viwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~-lPhG~---~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~ 802 (925)
+++=++|+ .|-..||.-.++- ++.++++. .++|. .+-|++|-+ +|.... +..+|+
T Consensus 594 ~~tya~F~-----~~Ra~Dqir~a~~----~~a~v~lvG~~aG~tTlg~eG~tHq~--~eDial--------~r~iPn-- 652 (889)
T TIGR03186 594 YIYYSMFG-----FQRIGDLIWAAAD----QRARGFLIGATSGKTTLGGEGLQHQD--GTSHLA--------ASTVPN-- 652 (889)
T ss_pred EEehHHhH-----hhhHHHHHHHHhh----cCCCcEEEEECCCccCCCCCcccccc--hHhHHH--------HhhCCC--
Confidence 88777765 2344465554431 12444444 44566 245888865 465433 456775
Q ss_pred hccccccCeEEEEcCChhHHHHHHHHHHhc----cCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCcee--
Q 002419 803 RTQIQECNWQIVNVTTPANYFHVLRRQIHR----EFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFK-- 876 (925)
Q Consensus 803 ~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~----~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~-- 876 (925)
|.|+.|+.+.+...+++..++| +.+.|+-+=..+.-+.+|. .+-++|... .. +.-+
T Consensus 653 --------~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~p~--~~~~~~~~~-------~~-gi~kg~ 714 (889)
T TIGR03186 653 --------CRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQPS--LPEDRLDAV-------RR-GILKGM 714 (889)
T ss_pred --------CEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCC--cCCCcccch-------hc-chhhee
Confidence 9999999999999999876662 2356766633322221121 111111100 00 1111
Q ss_pred EeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 877 RLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 877 ~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
.+|.+.. .+.-+-.|++||-+-.+.++|-+.+..
T Consensus 715 y~l~~~~-----~~g~dV~LlasG~~v~eAL~AAe~L~~ 748 (889)
T TIGR03186 715 YPLDPAA-----LAAARVQLLGSGAILGEVQAAARLLRD 748 (889)
T ss_pred eEeeccC-----CCCCCEEEEeccHHHHHHHHHHHHHhh
Confidence 2333321 122345899999999998888888754
No 43
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.76 E-value=1.7e-14 Score=175.98 Aligned_cols=445 Identities=14% Similarity=0.190 Sum_probs=262.6
Q ss_pred CCcccccceeehhhhhhhhhcCC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFT 438 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~t 438 (925)
..+|.+.+.|+|.|++.++..+- .+..+.-++|++|||.+. +|.++|++.+| +|.+ +|+||..|.....
T Consensus 195 gS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEld-Eg~~~EA~~~A~~~~LdN-----Li~ivD~N~q~lD 268 (891)
T PRK09405 195 VSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMD-EPESLGAISLAAREKLDN-----LIFVINCNLQRLD 268 (891)
T ss_pred cccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCCC-----EEEEEECCCcccC
Confidence 34888889999999999853221 123346799999999999 99999999999 9998 9999999999998
Q ss_pred cCCCCC-cCcccHHHHHhhcCccEEEE--------------------------e--------------------------
Q 002419 439 TDPMSG-RSSQYCTDVAKALDAPIFHV--------------------------N-------------------------- 465 (925)
Q Consensus 439 T~~~~~-rss~~~~d~Aka~giP~~~V--------------------------d-------------------------- 465 (925)
.+.... .....+.++.+++|+.++.| |
T Consensus 269 G~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~ 348 (891)
T PRK09405 269 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETK 348 (891)
T ss_pred CccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHH
Confidence 887653 22467899999999999999 4
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCC-CCCCCCCCcCHHHHHHHHhCCCHHH
Q 002419 466 -----------------GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH-NEIDEPSFTQPKMYKIIRSHPSSLE 527 (925)
Q Consensus 466 -----------------G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GH-ne~Ddp~ytqp~ey~~i~~~~dpi~ 527 (925)
|+|+++++.|.+.|.+ ..++|++|-+.|..-+|- +...... .+ |.
T Consensus 349 ~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~PtvIia~TvkG~G~~~~~e~~~--------~~--H~---- 411 (891)
T PRK09405 349 ALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQPTVILAKTIKGYGMGEAGEGKN--------IA--HQ---- 411 (891)
T ss_pred HHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCCEEEEEeceecCCCCcccCCCc--------cc--cC----
Confidence 9999999999988875 236899999999998887 3221110 00 00
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhh--
Q 002419 528 IYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKA-- 605 (925)
Q Consensus 528 ~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~-- 605 (925)
.+.++++++++.++.+.--+.+ ++.-..+|..+.. +...++.+.+.
T Consensus 412 --------~~~l~~e~~~~~r~~~g~~~~d------------~~~~~~~~~~~~~------------~s~e~~~l~~~r~ 459 (891)
T PRK09405 412 --------VKKLDLDDLKHFRDRFNIPISD------------EQLEKLPYYKPGE------------DSPEIKYLHERRK 459 (891)
T ss_pred --------CCCCCHHHHHHHHHHcCCCCCh------------hHhccCCCcCCCC------------CCHHHHHHHHHHH
Confidence 1223444443333333211100 0000011211000 00011111111
Q ss_pred -hh-cCCCCCCcchhhH----HHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc---CCcEEEecccCCC-----------
Q 002419 606 -IT-TLPENFKPHRGVK----KVYELRAQMIETGEGIDWALGEALAFATLLVE---GNHVRLSGQDVER----------- 665 (925)
Q Consensus 606 -~~-~~P~~f~~h~~l~----~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~---~~~v~l~GqDv~r----------- 665 (925)
+. .+|..-...+.+. ..++.-.+ -.+++.+.=-+|---++..|+.+ +++|+..=-|+.|
T Consensus 460 ~l~g~~p~r~~~~~~~~~P~~~~~~~~~~-~~~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~ 538 (891)
T PRK09405 460 ALGGYLPARRPKFEPLEVPALSAFEALLK-GSGEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQI 538 (891)
T ss_pred HcCCCCCCCCCCCCCCCCCChhhHHHhhc-cCCCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccc
Confidence 10 0111110011110 00110000 01123333333444556777775 8999999999986
Q ss_pred cccccccceeeecCCCceeccCCCccc---cCCCcceEEEcCCcchHHHHH--HHhhhcCC----CCCcceeechhhhhh
Q 002419 666 GTFSHRHSVLHDQETGEQYCPLDHVMM---NQDAEMFTVSNSSLSEFGVLG--FELGYSME----NPNSLVMWEAQFGDF 736 (925)
Q Consensus 666 GtF~~RHav~~dq~t~~~y~pL~~l~~---~~~~g~~rV~nspLSE~ailG--~~~G~s~~----g~~~lviwEaqFgDF 736 (925)
|.|+. .|..|+|-..=+. .+.+ +.|++|.-|+|...+| .+.|.|++ ++.|++++=++||
T Consensus 539 gi~~~---------~gq~y~~~d~~~~~~yke~~-PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~-- 606 (891)
T PRK09405 539 GIYNP---------HGQLYTPVDRDQLMYYKESK-DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFG-- 606 (891)
T ss_pred ccccc---------ccccccccccHHHHHHHHcC-CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhh--
Confidence 55665 6777888653210 0334 7899999999999999 88887776 6699988777765
Q ss_pred HhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC---CCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEE
Q 002419 737 ANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY---DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (925)
Q Consensus 737 ~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~---~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~V 813 (925)
.|-..||.-+.+-+. ..++.|-.-||. .|.|++|-+. |..+ .+..+|+ |.|
T Consensus 607 ---~~Ra~Dqir~a~~~~---~~~v~iggt~gg~tl~~eG~qHqdg--~s~~--------l~raiPn----------~tv 660 (891)
T PRK09405 607 ---FQRIGDLAWAAGDQR---ARGFLLGGTAGRTTLNGEGLQHEDG--HSHI--------LASTIPN----------CVS 660 (891)
T ss_pred ---hhhHHHHHHHHHHhc---CCCeEEEEECccccCCCCcccCCch--hhHH--------HHhhCCC----------CEE
Confidence 234445544443322 244444444443 3567888664 4332 2345775 999
Q ss_pred EEcCChhHHHHHHHHHHhc---cCCCcEEEEecccccCCCCCCCC-cccccccCCCCCCCCCCCceeEeecCCCCCCCCC
Q 002419 814 VNVTTPANYFHVLRRQIHR---EFRKPLVVMSPKNLLRHKECKSN-LSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLE 889 (925)
Q Consensus 814 v~pstpa~~~hlLr~q~~~---~~~~Pli~~~pK~Llr~~~~~s~-~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~ 889 (925)
+.|+.+.+...+++..+++ ....|...++= +..+..... .+++.. +. +.=-.++.+... +.
T Consensus 661 ~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl---~ne~~~~~~~pe~~~~-------~i--gKg~y~Lr~g~~---~~ 725 (891)
T PRK09405 661 YDPAFAYEVAVIVQDGLRRMYGEQENVFYYITV---MNENYHQPAMPEGAEE-------GI--LKGMYKLETAEG---KK 725 (891)
T ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEe---CCCCCCCCCCCccccc-------cc--ceEEEEeccCCC---CC
Confidence 9999999999999998773 22334443331 101111100 011211 00 110023333321 12
Q ss_pred CCccEEEEecchHHHHHHHHHHHhhh-cc
Q 002419 890 EGIRRLILCSGKVSSAVCVALYFFYN-FG 917 (925)
Q Consensus 890 ~~v~rvilcsGkvyydL~~~~~~~~~-~~ 917 (925)
.+-+-.|++||-+-.+.++|-+.+.+ .|
T Consensus 726 ~~~dV~LlasG~~v~eAL~AAe~L~~~~G 754 (891)
T PRK09405 726 GKPKVQLLGSGTILREVLEAAEILAEDYG 754 (891)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHhhhhC
Confidence 22356999999999999999988876 44
No 44
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.76 E-value=9.7e-15 Score=178.61 Aligned_cols=441 Identities=15% Similarity=0.182 Sum_probs=260.9
Q ss_pred cCCcccccceeehhhhhhhhhcCC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~ 437 (925)
...||.+++.|+|.|++.++.... .+..+.-++|++|||.+. +|.++|++.+| +|.+ +|+||.+|....
T Consensus 202 TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~-Eg~~~eA~~~A~~~~LdN-----Li~ivD~N~~~l 275 (896)
T PRK13012 202 TGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMD-EPESIAALSLAAREGLDN-----LVFVINCNLQRL 275 (896)
T ss_pred CCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhc-cHHHHHHHHHHHHhCCCc-----EEEEEECCCccc
Confidence 355999999999999999854221 123347799999999999 99999999999 9998 999999999999
Q ss_pred ccCCCCCcC-cccHHHHHhhcCccEEEE--------------------------e-------------------------
Q 002419 438 TTDPMSGRS-SQYCTDVAKALDAPIFHV--------------------------N------------------------- 465 (925)
Q Consensus 438 tT~~~~~rs-s~~~~d~Aka~giP~~~V--------------------------d------------------------- 465 (925)
..+.+..-. ...+.++.+++|+.++.| |
T Consensus 276 DG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~ 355 (896)
T PRK13012 276 DGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPEL 355 (896)
T ss_pred cCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHH
Confidence 888765333 367899999999999999 9
Q ss_pred ------------------CCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC---CCCCCCCcCHHHHHHHHhCCC
Q 002419 466 ------------------GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN---EIDEPSFTQPKMYKIIRSHPS 524 (925)
Q Consensus 466 ------------------G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn---e~Ddp~ytqp~ey~~i~~~~d 524 (925)
|+|+++|++|.+.|.+ ..++|++|-+.|..-+|=. |......-+.. -..+
T Consensus 356 ~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~PtvIla~TvkG~G~~~~~e~~~~~H~~~~------l~~e 426 (896)
T PRK13012 356 AALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPTVILAKTKKGYGMGEAGEGRMTTHQQKK------LDVE 426 (896)
T ss_pred HHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecCCCCcccCCCcccccCCC------CCHH
Confidence 9999999999888774 2358999999999988854 32221110000 0112
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHH--------HHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCC
Q 002419 525 SLEIYQNKLLECQH-VTQEDINKI--------QEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVK 595 (925)
Q Consensus 525 pi~~y~~~Li~~Gi-~t~ee~~~i--------~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~ 595 (925)
-++.|++++ |+ +++++++++ ..+++. +.+..+....+.|.... .... +
T Consensus 427 ~~~~~r~~~---g~p~~d~~~~~~pf~~p~~~~~~~~~-l~~r~~~l~g~~P~r~~----~~~~--------------l- 483 (896)
T PRK13012 427 ALKAFRDRF---RLPLSDEQLEQLPFYKPAEDSPEMRY-LHARRAALGGYLPRRRT----AAPP--------------L- 483 (896)
T ss_pred HHHHHHHHc---CCCCChhhhccCCCcCCccccHHHHH-HHHHHHHhcCcCCcccc----cccc--------------c-
Confidence 233444444 21 333333320 001111 11111111111111100 0000 0
Q ss_pred hHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHc---CCcEEEecccCCC-----cc
Q 002419 596 PEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVE---GNHVRLSGQDVER-----GT 667 (925)
Q Consensus 596 ~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~---~~~v~l~GqDv~r-----Gt 667 (925)
.+|.. .....++.. ..++.+.=.+|--.++..|+.. +++|+..--|+.| |-
T Consensus 484 ------------~~p~~----~~~~~~~~~-----~~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~ 542 (896)
T PRK13012 484 ------------PVPPL----SAFAQFALG-----AGGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANL 542 (896)
T ss_pred ------------CCCch----hhHHHhhcc-----cCCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccc
Confidence 00100 000000000 1122233334445567777777 8999888788873 22
Q ss_pred cccccceeeecCCCceecc-----CCCccccCCCcceEEEcCCcchHHHHH--HHhhhcCC----CCCcceeechhhhhh
Q 002419 668 FSHRHSVLHDQETGEQYCP-----LDHVMMNQDAEMFTVSNSSLSEFGVLG--FELGYSME----NPNSLVMWEAQFGDF 736 (925)
Q Consensus 668 F~~RHav~~dq~t~~~y~p-----L~~l~~~~~~g~~rV~nspLSE~ailG--~~~G~s~~----g~~~lviwEaqFgDF 736 (925)
|.+.- ++.. .+..|.| +.... +.+ +.|++|.-|+|.+.+| .+.|.|++ +..|++++=++|+
T Consensus 543 f~~~~--i~~~-~gq~y~~~d~~~~~~yk--e~~-pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~-- 614 (896)
T PRK13012 543 FRQVG--IYSP-LGQLYEPEDAGSLLYYR--EAK-DGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFG-- 614 (896)
T ss_pred ccccc--cccc-ccccccccchhHHhhhh--hCC-CCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHH--
Confidence 33310 0100 4566777 33344 444 6899999999999977 66666555 4588886655443
Q ss_pred HhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC---CCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEE
Q 002419 737 ANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY---DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (925)
Q Consensus 737 ~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~---~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~V 813 (925)
+|-..||.-..+-++ ..++.+...||. .+-|++|-. +|.... +..+|+ +.|
T Consensus 615 ---~~R~~Dqir~a~~~~---~~~vlig~T~gg~tlg~dG~THQ~--~eslal--------~RaIPN----------~~V 668 (896)
T PRK13012 615 ---FQRVGDLIWAAADQR---ARGFLLGATAGRTTLGGEGLQHQD--GHSHLL--------ASTIPN----------CRA 668 (896)
T ss_pred ---HHHHHHHHHHHHhcc---cCCeEEEEeCcccccCCCCCCCcc--hHhHHH--------HHhCCC----------CEE
Confidence 455556654443221 346777777865 356899866 465433 445775 999
Q ss_pred EEcCChhHHHHHHHHHHhc--c--CCCcEEEEecccccCCCCCCCCc-ccccccCCCCCCCCCCCceeEeecCCCCCCCC
Q 002419 814 VNVTTPANYFHVLRRQIHR--E--FRKPLVVMSPKNLLRHKECKSNL-SEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDL 888 (925)
Q Consensus 814 v~pstpa~~~hlLr~q~~~--~--~~~Pli~~~pK~Llr~~~~~s~~-~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~ 888 (925)
+.|+.+.+...+++..+++ . .+.|..+- |.|.+.....+ +++.. ++. . |. -+|.+.. +
T Consensus 669 ~~PADa~E~a~iv~~al~~m~~~~~~~p~YIr----L~r~~~~~p~~~~~~~~-----~i~-k-G~--y~l~~~~----~ 731 (896)
T PRK13012 669 YDPAFAYELAVIVDDGMRRMLEEQEDVFYYLT----VMNENYAQPALPEGAEE-----GIL-K-GM--YRLAAAA----E 731 (896)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhccCCCeEEEE----ecCCCCCCCCCCccchh-----ccc-c-Cc--EEEeccC----C
Confidence 9999999999999987754 1 24564432 22222211001 11110 111 1 33 2333321 1
Q ss_pred CCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 889 EEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 889 ~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
.. +-.|++||-+-...+++.+.+.+
T Consensus 732 g~--dv~LiasGs~v~eAl~AAe~L~~ 756 (896)
T PRK13012 732 AP--RVQLLGSGAILREVLAAARLLAD 756 (896)
T ss_pred CC--CEEEEEecHHHHHHHHHHHHHHh
Confidence 22 34999999999988888887753
No 45
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.7e-15 Score=172.50 Aligned_cols=403 Identities=15% Similarity=0.167 Sum_probs=254.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~ 440 (925)
+|||.++..|+|+|++.++... ...-++|++|||+.+ +|++||||++| +|.+ +|.|..||+++++++
T Consensus 118 G~lgQgis~a~GmA~~~k~~~k----~~~rv~~vlGDG~~~-eG~~~EA~s~Ag~l~ldn-----LVai~D~n~is~~g~ 187 (632)
T KOG0523|consen 118 GPLGQGISNAVGMAYAGKHLGK----ASNRVYCVLGDGCLT-EGSVWEAMSLAGHLKLDN-----LVAIYDNNKISIDGA 187 (632)
T ss_pred CCccchHHHHHHHHHHHHhhcc----ccceEEEEEcCchhc-cchHHHHHhhhhhcccCC-----EEEEEccccccCCCC
Confidence 7899999999999999998765 126799999999999 99999999999 8887 999999999999998
Q ss_pred CCCCcCcccHHH-HHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHH
Q 002419 441 PMSGRSSQYCTD-VAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKII 519 (925)
Q Consensus 441 ~~~~rss~~~~d-~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i 519 (925)
...+. ..++.. +..+||+.+..|||.|++++.++...|. ...++|+.|-+.|+--+|---.- -..|
T Consensus 188 t~~~~-~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~~ig---------~~~~ 254 (632)
T KOG0523|consen 188 TSLGF-DEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSPYIG---------SESV 254 (632)
T ss_pred Ccccc-cccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCccccc---------cccc
Confidence 87765 356666 8899999999999999999999888887 35579999999999887742211 1123
Q ss_pred HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChH
Q 002419 520 RSHPSSLEIYQNKLLECQHVTQEDINKIQEK--VNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPE 597 (925)
Q Consensus 520 ~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e--~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~ 597 (925)
...+++.+..++ ++++... ..-.+.+ ..+.+| .. +.+......-.++.-
T Consensus 255 Hg~pl~~~~~~~------------~k~~~~~P~~~~~v~~---~~~~~p-~~-------------~~~~~~~~~~~i~~~ 305 (632)
T KOG0523|consen 255 HGAPLGEDDVER------------VKSIKGLPVLIFVVPE---KVKLYP-EK-------------PVEDARAISVRIPKI 305 (632)
T ss_pred cCCcchhhHHHH------------HHhhcCCcceeEEecc---ccccCC-Cc-------------ccccccccccCcCcc
Confidence 223333221111 0000000 0000000 000111 00 000000000000000
Q ss_pred HHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeee
Q 002419 598 ILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHD 677 (925)
Q Consensus 598 ~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~d 677 (925)
. .. -|+.|++-.+ . +-...+-..|+..|-+.+++|..---|..-+||.-
T Consensus 306 ~-------~~-~~p~yk~~Dk---~-------------~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~td------- 354 (632)
T KOG0523|consen 306 W-------EK-SLPTYKVGDK---A-------------VATRKAFGEALAALAEADPRVIGGSADLKNSTLTD------- 354 (632)
T ss_pred c-------cc-cCCccccCCh---h-------------hhHHHHHHHHHHHHhhcCcCeEEEecccCCCchhh-------
Confidence 0 00 1112222111 0 11122233456667777888777767776677662
Q ss_pred cCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCC-CcceeechhhhhhHhhHHHHHHHHHHhhhhhhC
Q 002419 678 QETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENP-NSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL 756 (925)
Q Consensus 678 q~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~-~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~ 756 (925)
+.+ +++ +.|-+|.-|.|...+|++.|.|..|+ .|.+ .-|.-|..-|.++|-. .. .
T Consensus 355 ------------~~~-~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~---~tf~~F~trA~dqvr~---~a----~ 410 (632)
T KOG0523|consen 355 ------------FFP-KRF-PERFIECGIAEQNMVGIANGIACRGRTIPFC---GTFAAFFTRAFDQVRM---GA----L 410 (632)
T ss_pred ------------hcc-ccC-ccceEEEeeehhhhHHhhhchhcCCCccchh---HHHHHHHHHhhhheee---hh----h
Confidence 331 444 67999999999999999999999999 7776 4577777766644321 11 1
Q ss_pred CcCCcEEEcCc--cCCC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhcc
Q 002419 757 RQSGLVVMLPH--GYDG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHRE 833 (925)
Q Consensus 757 ~~~~lv~~lPh--G~~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~ 833 (925)
.+.+++...-| +.-| -||.|-- +|-+ ..|..+|+ |.|..|+.....+++...++..
T Consensus 411 s~~~v~~v~th~~i~~GeDGPth~~--iedl--------A~frsiPn----------~~v~~PaD~~et~~av~~Aa~~- 469 (632)
T KOG0523|consen 411 SQANVIYVATHDSIGLGEDGPTHQP--IEDL--------AMFRSIPN----------MIVFRPADGNETENAVATAANT- 469 (632)
T ss_pred ccCCcEEEEEeccccccCCCccccc--HHHH--------HHHHhCCC----------ceEEecCchHHHHHHHHHHHhc-
Confidence 25677777777 2234 3887743 6643 56888995 9999999999999999999987
Q ss_pred CCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHh
Q 002419 834 FRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFF 913 (925)
Q Consensus 834 ~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~ 913 (925)
...|.|+-.+..-+- .-+..+..+ . |+=+-|+-|.+ -+-+++-+|---|.-+++-+.+
T Consensus 470 ~~~p~i~~~~r~~~~----~~~~~~~~~--------i--gkg~~vl~~~~--------~dV~LiG~Gs~v~~cl~AA~~L 527 (632)
T KOG0523|consen 470 KGTPSIRTLSRQNLP----IYNNTEIEE--------I--GKGKYVLQEVE--------PDVILIGTGSEVQECLEAAELL 527 (632)
T ss_pred CCCeeEEEecCcccc----ccCCCchhh--------h--ccccEEEecCC--------CCEEEEeccHHHHHHHHHHHHH
Confidence 234777765533221 111111111 1 11123555431 2347889999888888888888
Q ss_pred hhc
Q 002419 914 YNF 916 (925)
Q Consensus 914 ~~~ 916 (925)
+--
T Consensus 528 ~~~ 530 (632)
T KOG0523|consen 528 SED 530 (632)
T ss_pred Hhc
Confidence 743
No 46
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.71 E-value=4.6e-17 Score=169.04 Aligned_cols=119 Identities=18% Similarity=0.295 Sum_probs=104.8
Q ss_pred cccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~ 437 (925)
...++||.++|+|+|+|+|.++++.+ ..++|++|||+++ ||.+||+|++| ++| +|+||+||++++
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~-----~~vv~~~GDG~~~-eG~~~Eal~~A~~~~~~------li~vvdnN~~~~ 139 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKK-----RKVIAVIGDGALT-GGMAFEALNNAGYLKSN------MIVILNDNEMSI 139 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCC-----CeEEEEEcccccc-cChHHHHHHHHHHhCCC------EEEEEECCCccc
Confidence 35688999999999999999987654 7899999999999 99999999999 788 999999999999
Q ss_pred ccCCCCCcCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCC
Q 002419 438 TTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFG 501 (925)
Q Consensus 438 tT~~~~~rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~G 501 (925)
+++.. ...++++++|+.+.. |||+|++++.+|++.|. +.++|++|++.|+.-+|
T Consensus 140 ~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~~a~----~~~~P~~I~~~T~kg~g 194 (195)
T cd02007 140 SPNVG------TPGNLFEELGFRYIGPVDGHNIEALIKVLKEVK----DLKGPVLLHVVTKKGKG 194 (195)
T ss_pred CCCCC------CHHHHHHhcCCCccceECCCCHHHHHHHHHHHH----hCCCCEEEEEEEecccC
Confidence 98764 467888899999886 99999999999877764 46799999999988665
No 47
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=99.70 E-value=8.3e-17 Score=161.23 Aligned_cols=151 Identities=13% Similarity=0.138 Sum_probs=123.8
Q ss_pred HHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCC
Q 002419 642 EALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME 721 (925)
Q Consensus 642 E~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~ 721 (925)
-..++..++++++++.+.|+|+..++ . | +++. ++| +.|++|++|+|.+++|.+.|+|+.
T Consensus 3 ~~~~l~~~~~~~~~~v~~~~Dl~~~~--~---------~-------~~~~--~~~-p~r~i~~gIaE~~~vg~A~GlA~~ 61 (156)
T cd07033 3 FGEALLELAKKDPRIVALSADLGGST--G---------L-------DKFA--KKF-PDRFIDVGIAEQNMVGIAAGLALH 61 (156)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCC--C---------c-------HHHH--HhC-CCCeEEeChhHHHHHHHHHHHHHC
Confidence 34577889999999999999997532 1 2 6777 777 789999999999999999999999
Q ss_pred CCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCcc-CC--CCCccCCCchhhhhhhccCCCCCcccCC
Q 002419 722 NPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHG-YD--GQGPEHSSARLERFLQMSDDNPYVIPEM 798 (925)
Q Consensus 722 g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG-~~--G~GpeHSs~R~ErfLql~~~~~~~~~~~ 798 (925)
|.+|++ +.+ .+|..-|.+||-+.++ ++ +.|++++.+|| +. +.|+.|++--.+. ++.++
T Consensus 62 G~~pi~--~~~-~~f~~ra~dqi~~~~a----~~--~~pv~~~~~~~g~~~~~~G~tH~~~~~~a----------~~~~i 122 (156)
T cd07033 62 GLKPFV--STF-SFFLQRAYDQIRHDVA----LQ--NLPVKFVGTHAGISVGEDGPTHQGIEDIA----------LLRAI 122 (156)
T ss_pred CCeEEE--EEC-HHHHHHHHHHHHHHHh----cc--CCCeEEEEECCcEecCCCCcccchHHHHH----------HhcCC
Confidence 998866 999 9999988866644332 22 38999999995 43 4799997642443 46789
Q ss_pred CCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecc
Q 002419 799 DSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPK 844 (925)
Q Consensus 799 pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK 844 (925)
|| ++|+.|++|.|++.+|+.++.. ++|++|..|+
T Consensus 123 Pg----------~~v~~Ps~~~~~~~ll~~a~~~--~~P~~irl~~ 156 (156)
T cd07033 123 PN----------MTVLRPADANETAAALEAALEY--DGPVYIRLPR 156 (156)
T ss_pred CC----------CEEEecCCHHHHHHHHHHHHhC--CCCEEEEeeC
Confidence 97 9999999999999999999998 7899998764
No 48
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.69 E-value=3.3e-16 Score=158.08 Aligned_cols=162 Identities=24% Similarity=0.276 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHcCC-cEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHh
Q 002419 638 WALGEALAFATLLVEGN-HVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFEL 716 (925)
Q Consensus 638 w~~aE~lA~~~ll~~~~-~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~ 716 (925)
|..+...++.+++++++ +|++.|+|++.+++..++.++.+++. + ++.|++|++|+|.+++|++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~---------~------~~~R~~~~gIaE~~~vg~a~ 66 (168)
T smart00861 2 TRKAFGEALAELAERDPERVVVSGADVGGSTGLDRGGVFPDTKG---------L------GPGRVIDTGIAEQAMVGFAA 66 (168)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCCCcCCccCCCCC---------C------CCccEEEcCcCHHHHHHHHH
Confidence 66788889999999955 99999999988766654444433222 2 46789999999999999999
Q ss_pred hhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC-CCC-CccCCCchhhhhhhccCCCCCc
Q 002419 717 GYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY-DGQ-GPEHSSARLERFLQMSDDNPYV 794 (925)
Q Consensus 717 G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~-~G~-GpeHSs~R~ErfLql~~~~~~~ 794 (925)
|+|+.|.+|++ +.++. |..-|.++|.+.+ ..+ ..++|++.+.|+ .|. ||.|++.+.+.+
T Consensus 67 GlA~~G~~pi~--~~~~~-f~~~a~~~~~~~~---~~~---~~~~v~~~~~g~~~g~~G~tH~~~~~~~~---------- 127 (168)
T smart00861 67 GLALAGLRPVV--AIFFT-FFDRAKDQIRSDG---AMG---RVPVVVRHDSGGGVGEDGPTHHSQEDEAL---------- 127 (168)
T ss_pred HHHHcCCCcEE--EeeHH-HHHHHHHHHHHhC---ccc---CCCEEEEecCccccCCCCccccchhHHHH----------
Confidence 99999997765 76655 4446775554433 222 688999986544 566 997777657755
Q ss_pred ccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCc-EEEEecc
Q 002419 795 IPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKP-LVVMSPK 844 (925)
Q Consensus 795 ~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~P-li~~~pK 844 (925)
+.++|| ++|+.|++|.|++++|+.++.+ .++| +|++++|
T Consensus 128 ~~~iP~----------~~v~~P~~~~e~~~~l~~a~~~-~~~p~~i~~~~~ 167 (168)
T smart00861 128 LRAIPG----------LKVVAPSDPAEAKGLLRAAIRR-DDGPPVIRLERK 167 (168)
T ss_pred HhcCCC----------cEEEecCCHHHHHHHHHHHHhC-CCCCEEEEecCC
Confidence 558886 9999999999999999999964 2356 7777665
No 49
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.6e-14 Score=165.07 Aligned_cols=426 Identities=15% Similarity=0.186 Sum_probs=242.4
Q ss_pred cCCcccccceeehhhhhhhhhcCCC-----CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ 434 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~-----~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq 434 (925)
.++||.+++.|+|+|+|.++....- +--+.-+.|++|||+.. +|+.||+..+| +|-+ +|.+..+|+
T Consensus 115 TGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm-EGvs~EA~slAG~l~L~k-----LIvlyD~N~ 188 (663)
T COG0021 115 TGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM-EGVSHEAASLAGHLKLGK-----LIVLYDSND 188 (663)
T ss_pred cCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh-cccHHHHHHHHhhcCCCc-----EEEEEeCCC
Confidence 3679999999999999998765431 12245799999999999 99999999999 7877 999999999
Q ss_pred cccccCCCCCcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCC-CCCCCC--
Q 002419 435 VAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE-IDEPSF-- 510 (925)
Q Consensus 435 ~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne-~Ddp~y-- 510 (925)
+.+..+.+.+. +.+...|.++||+.++ .+||+|++++..|+++|.. ...||++|+|+|---+|-.. .+....
T Consensus 189 IsiDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~---~~dkPtlI~~kTiIG~Gsp~kegt~~~HG 264 (663)
T COG0021 189 ISIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKA---STDKPTLIIVKTIIGKGSPNKEGTHKVHG 264 (663)
T ss_pred ceeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHh---cCCCCeEEEEEeeeecCCCCcCCCccccC
Confidence 99999888766 6789999999999999 5799999999998888764 46799999999988777543 333321
Q ss_pred --cCHHHHHHHHhC-----------CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHhhhcCCCccchhh
Q 002419 511 --TQPKMYKIIRSH-----------PSSLEIYQNKLLECQHVTQEDINKIQEKVNRI---LSEEFVASKDYVPNRRDWLS 574 (925)
Q Consensus 511 --tqp~ey~~i~~~-----------~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~---l~~a~~~A~~~~p~~~~~~~ 574 (925)
--+++.++.++. +++...|+ ...++|.-.+++++++-+.+++. +.+.++...+.. +.
T Consensus 265 apLg~~ev~~~k~~lgw~~~~F~vp~ev~~~~~-~~~~~g~~~~~~W~~~~~~y~~~~Pe~~~~~~r~~~~~------~p 337 (663)
T COG0021 265 APLGEEEVAAAKKALGWEPEPFEVPEEVYAAFR-AVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGE------LP 337 (663)
T ss_pred CCCCHHHHHHHHHHhCCCCCceecCHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhhChHHHHHHHHHhccc------Cc
Confidence 233344433221 11222222 33344444444444444444433 222222222211 11
Q ss_pred hhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC
Q 002419 575 AYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGN 654 (925)
Q Consensus 575 ~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~ 654 (925)
..|..... . .. .++.+..+.+..+++|. .|-..-+
T Consensus 338 ~~~~~~~~-~-~~---~~~~~~ATR~as~~~L~----------------------------------------~l~~~~p 372 (663)
T COG0021 338 ANWAAFLP-K-FE---ANGKSIATRKASGKALN----------------------------------------ALAKKLP 372 (663)
T ss_pred hhHHHhhh-h-hc---ccccccchHHHHHHHHH----------------------------------------HHHhhCc
Confidence 11211100 0 00 00111111111111111 1111111
Q ss_pred cEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCC-Ccceeechhh
Q 002419 655 HVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENP-NSLVMWEAQF 733 (925)
Q Consensus 655 ~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~-~~lviwEaqF 733 (925)
.+.=---|+..-++.. -+.. ..+.+ +.+ .-|-+.--+-|.++.+..-|+|+.|. +|..===..|
T Consensus 373 ~l~GGSADLa~Sn~T~-------~~~~------~~~~~-~~~-~gr~i~~GVREf~M~AimNGialhGg~~pyggTFlvF 437 (663)
T COG0021 373 ELIGGSADLAPSNLTK-------ISGS------GDFSP-ENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFLVF 437 (663)
T ss_pred cccccCcccccCcccc-------cccc------CCCCC-CCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecceehhh
Confidence 1100001222110000 0000 01110 111 23444557899999999999999876 6643112335
Q ss_pred hhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc---cCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccC
Q 002419 734 GDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH---GYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN 810 (925)
Q Consensus 734 gDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh---G~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~N 810 (925)
.||+-+|.- --=....|++..+-| |-..-||.|-- +| ||+. +..+|+
T Consensus 438 sdY~r~AiR----------laALm~l~~~~V~THDSIgvGEDGPTHqP--iE---qLa~-----LRaiPN---------- 487 (663)
T COG0021 438 SDYARPAVR----------LAALMGLPVIYVFTHDSIGVGEDGPTHQP--VE---QLAS-----LRAIPN---------- 487 (663)
T ss_pred HhhhhHHHH----------HHHhcCCCeEEEEecCceecCCCCCCCCc--HH---HHHH-----hhccCC----------
Confidence 555554431 111234688888888 33445999953 67 3333 667885
Q ss_pred eEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCC
Q 002419 811 WQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEE 890 (925)
Q Consensus 811 l~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~ 890 (925)
+.|.-|..+-+-....+.++.+...--+++++-..|=-.+ .++.+.... |.+ ||.|.. .+
T Consensus 488 ~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQnlp~l~--~t~~~~~~k-----------GaY--vl~~~~-----~~ 547 (663)
T COG0021 488 LSVIRPADANETAAAWKYALERKDGPTALILTRQNLPVLE--RTDLEGVAK-----------GAY--VLKDSG-----GE 547 (663)
T ss_pred ceeEecCChHHHHHHHHHHHhcCCCCeEEEEecCCCCccC--CCccccccC-----------ccE--EEeecC-----CC
Confidence 9999999999999999999986444344555544442211 122222222 333 555542 11
Q ss_pred CccEEEEecchHHHHHHHHHHHhhh
Q 002419 891 GIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 891 ~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
+.+-+|+.||-=----+++.+.+.+
T Consensus 548 ~pd~iliAtGSEV~lAv~Aa~~L~~ 572 (663)
T COG0021 548 DPDVILIATGSEVELAVEAAKELEA 572 (663)
T ss_pred CCCEEEEecccHHHHHHHHHHHHHh
Confidence 4557999999744444444454443
No 50
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.67 E-value=9.4e-15 Score=169.08 Aligned_cols=364 Identities=17% Similarity=0.253 Sum_probs=233.3
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcC----CCCCCcccEEEEEEeCCcccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSA----LPNYSIGGTIHIVVNNQVAFT 438 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~----LP~y~~GGvI~vV~NNq~g~t 438 (925)
.+|-++.++.|+|+|.|+...+.+ .-+|+++||||++ -|..+|+||-+. -+ +|.|+.+|+.+|+
T Consensus 114 ~GHsSTSiSaalG~A~A~~~~g~~-----~~vvaVIGDGAlt-~GmA~EALN~ag~~~~~~------~iVILNDNeMSIs 181 (627)
T COG1154 114 VGHSSTSISAALGMAKARDLKGED-----RNVVAVIGDGALT-GGMAFEALNNAGADLKSN------LIVILNDNEMSIS 181 (627)
T ss_pred cCchHHHHHHHhhHHHHHHhcCCC-----CcEEEEECCcccc-chHHHHHHhhhhhccCCC------EEEEEeCCCcccC
Confidence 378999999999999999987765 7899999999999 899999999993 44 9999999999998
Q ss_pred cCCCC-------CcCcc-------cH--------------H--------------HHHhhcCccEE-EEeCCCHHHHHHH
Q 002419 439 TDPMS-------GRSSQ-------YC--------------T--------------DVAKALDAPIF-HVNGDDMEAVAHV 475 (925)
Q Consensus 439 T~~~~-------~rss~-------~~--------------~--------------d~Aka~giP~~-~VdG~D~eAV~~a 475 (925)
.+..- -++++ .. . -+.+.+|+..+ -|||+|++++..+
T Consensus 182 ~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~~ 261 (627)
T COG1154 182 PNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIPT 261 (627)
T ss_pred CCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHHH
Confidence 66321 11111 00 0 12334566555 4899999999986
Q ss_pred HHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 002419 476 CELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRIL 555 (925)
Q Consensus 476 ~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l 555 (925)
.+.| |+.++|+||+++|-.-.|= .|.| .||.. |- |+
T Consensus 262 Lk~~----kd~~gPvllHv~T~KGKGY---------~pAE-------~d~~~-~H------~v----------------- 297 (627)
T COG1154 262 LKNA----KDLKGPVLLHVVTKKGKGY---------KPAE-------EDPIK-YH------GV----------------- 297 (627)
T ss_pred HHHH----hcCCCCEEEEEEecCCCCC---------Chhh-------cChhh-cc------CC-----------------
Confidence 6655 4689999999999766552 2221 22222 10 00
Q ss_pred HHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCC
Q 002419 556 SEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEG 635 (925)
Q Consensus 556 ~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~ 635 (925)
.| + .+ ..||.... . ....
T Consensus 298 ----------~~------------f-~~------~~tg~~~~----------~-----------------------~~~~ 315 (627)
T COG1154 298 ----------GP------------F-DP------IETGQSKK----------S-----------------------KPSA 315 (627)
T ss_pred ----------CC------------C-Cc------cccCccCC----------C-----------------------CCCC
Confidence 00 0 00 00000000 0 0000
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFE 715 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~ 715 (925)
-+|...-.-++..+..+|+++.-.=--...|| .|..++ ++| |.|.+|.-|+|...+-|+
T Consensus 316 ~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt------------------GL~~F~--~~f-P~R~fDVGIAEQHAVT~A 374 (627)
T COG1154 316 PSYTKVFGDTLCELAAKDEKIVAITAAMPEGT------------------GLVKFS--KKF-PDRFFDVGIAEQHAVTFA 374 (627)
T ss_pred CCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC------------------ChHHHH--HhC-chhheehhhhHHHHHHHH
Confidence 11222222233344455555543322111121 123445 556 789999999999999999
Q ss_pred hhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcC-ccCCCC-CccCCCchhhhhhhccCCCCC
Q 002419 716 LGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLP-HGYDGQ-GPEHSSARLERFLQMSDDNPY 793 (925)
Q Consensus 716 ~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lP-hG~~G~-GpeHSs~R~ErfLql~~~~~~ 793 (925)
.|+|..|.+|+| +.|.-|..-|. ||.+--- =.+..|+++-+= .|..|. |+.|--. | |-.
T Consensus 375 AGlA~~G~kPvv---aIYSTFLQRAY---DQliHDv---aiqnLPV~faIDRAGivG~DG~TH~G~----f------Dls 435 (627)
T COG1154 375 AGLAAEGMKPVV---AIYSTFLQRAY---DQLIHDV---AIQNLPVTFAIDRAGIVGADGPTHQGL----F------DLS 435 (627)
T ss_pred HHHHhCCCCCEE---EEecHHHHHHH---HHHHHHH---HhccCCeEEEEecCcccCCCCCccccH----H------HHH
Confidence 999999999998 67999998888 5555221 123578888775 466554 9999887 2 223
Q ss_pred cccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCC-CcEEEEecccccCCCCCCCCcccccccCCCCCCCCCC
Q 002419 794 VIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFR-KPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQG 872 (925)
Q Consensus 794 ~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~-~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~ 872 (925)
++..+|+ |.|+.|++.+...++|+.++.- + .|+.|=-|+.---.. .... ++.. .+-
T Consensus 436 ~l~~iPn----------mvi~aP~de~el~~ml~ta~~~--~~gP~AiRyPrg~~~~~--~~~~-~~~~--------~~~ 492 (627)
T COG1154 436 FLRCIPN----------MVIMAPRDEEELRQMLYTALAQ--DDGPVAIRYPRGNGVGV--ILTP-ELEP--------LEI 492 (627)
T ss_pred HHhcCCC----------cEEecCCCHHHHHHHHHHHHhc--CCCCeEEEecCCCCCCC--Cccc-cccc--------ccc
Confidence 4568885 9999999999999999999986 5 699998876532111 0111 1111 112
Q ss_pred CceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 873 TRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 873 ~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
|. -+++.. .-+-+|||.|..++.-+++.+.+.+.|
T Consensus 493 Gk-~~i~~~---------G~~vail~~G~~~~~al~vae~L~~~G 527 (627)
T COG1154 493 GK-GELLKE---------GEKVAILAFGTMLPEALKVAEKLNAYG 527 (627)
T ss_pred cc-eEEEec---------CCcEEEEecchhhHHHHHHHHHHHhcC
Confidence 33 223322 233599999999998888888877755
No 51
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.66 E-value=3.3e-16 Score=168.75 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=115.7
Q ss_pred cccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAF 437 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~ 437 (925)
...++||.++|.|+|+|+|.++...+ ..++|+.|||++. +|.++|+++.| +||+ +|+|+.||+|++
T Consensus 102 ~~~GslG~gl~~avG~Ala~~~~~~~-----~~v~~i~GDG~~~-~G~~~eal~~a~~~~l~~-----li~vvdnN~~~~ 170 (255)
T cd02012 102 VTTGSLGQGLSVAVGMALAEKLLGFD-----YRVYVLLGDGELQ-EGSVWEAASFAGHYKLDN-----LIAIVDSNRIQI 170 (255)
T ss_pred eCCcchhhHHHHHHHHHHHHHHhCCC-----CEEEEEECccccc-ccHHHHHHHHHHHcCCCc-----EEEEEECCCccc
Confidence 34488999999999999999986554 7899999999999 99999999999 9987 999999999999
Q ss_pred ccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCC
Q 002419 438 TTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI 505 (925)
Q Consensus 438 tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~ 505 (925)
+++........+++++++++|++++.|||+|++++.++.+.|.+. .++|++|++.|.+-.||+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~ 235 (255)
T cd02012 171 DGPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFM 235 (255)
T ss_pred cCcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc---CCCCEEEEEEeecccccCcc
Confidence 887655555678899999999999999999999999998888753 27899999999999999843
No 52
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.58 E-value=8.8e-15 Score=154.50 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=126.9
Q ss_pred cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccC
Q 002419 266 EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSY 345 (925)
Q Consensus 266 eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~ 345 (925)
-|+++..+.....++ |..|.++ +.+|... . .++++|++|. . . || +++|.. ..
T Consensus 2 ~GHg~~~l~a~l~l~-----G~~~~~~-p~~~~~~----~----gl~~lf~qfs-~-----~----gg---~psH~~-~~ 53 (227)
T cd02011 2 PGHGGPAVLANLYLE-----GSYSEFY-PEISQDE----E----GMRKLFKQFS-F-----P----GG---IPSHAA-PE 53 (227)
T ss_pred CChHHHHHHHHHHhc-----CCCcccc-ccccccH----H----HHHHHHHhcC-C-----C----CC---CCCCCc-cc
Confidence 478877665555554 4346566 6888654 1 1366888882 1 1 12 567874 22
Q ss_pred CCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchH---HHHHHhcCCCCCC
Q 002419 346 DRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVV---YETLHLSALPNYS 422 (925)
Q Consensus 346 ~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v---~EalnlA~LP~y~ 422 (925)
++ .+....+.||.++++|+|+|+. +. +.+++|++|||+++ +|.+ ||+.+++ ..++
T Consensus 54 ---tp-------Gi~~~~G~LG~gLs~A~G~a~d----~~-----d~iv~~vvGDGE~e-eG~lA~~W~a~~~~--~~~~ 111 (227)
T cd02011 54 ---TP-------GSIHEGGELGYSLSHAYGAVFD----NP-----DLIVACVVGDGEAE-TGPLATSWHSNKFL--NPAT 111 (227)
T ss_pred ---CC-------CeeecccchhhHHHHHHHhhhc----CC-----CcEEEEEECcCHHH-HHhHHHHHHhhhhh--cccc
Confidence 22 2345568899999999999852 22 37999999999999 9997 7766664 3344
Q ss_pred cccEEEEEEeCCcccccCCCCCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHc
Q 002419 423 IGGTIHIVVNNQVAFTTDPMSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQT 485 (925)
Q Consensus 423 ~GGvI~vV~NNq~g~tT~~~~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~ 485 (925)
.|.++-|+.||+|+++++...++ +...+.+++++||++++.|||+|+++|+++++.|+++++.
T Consensus 112 ~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~ 175 (227)
T cd02011 112 DGAVLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIE 175 (227)
T ss_pred cCCeEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHH
Confidence 45589999999999999998664 3578999999999999999999999999999999998775
No 53
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.53 E-value=3.7e-14 Score=158.21 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=106.3
Q ss_pred ccCCcccccceeehhhhhhhhhc-----CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYS-----NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN 433 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~-----~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN 433 (925)
..+.||.++++|+|+|+|.+... .+.+..+..++|++|||.++ +|+++||+.+| +|.+ +|.||.+|
T Consensus 109 stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~-EG~~~EA~~~A~~~~L~n-----Li~i~D~N 182 (332)
T PF00456_consen 109 STGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQ-EGSVWEAASLAGHYKLDN-----LIVIYDSN 182 (332)
T ss_dssp --SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHH-SHHHHHHHHHHHHTT-TT-----EEEEEEEE
T ss_pred eccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcccc-chhhHHHHHHHHHhCCCC-----EEEEEecC
Confidence 44679999999999999998753 12223356899999999999 99999999999 9998 99999999
Q ss_pred CcccccCCCCCcCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 434 QVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 434 q~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
++.+..+.+... ..++.++-++||+.++.| ||+|+++++.|+..|.. ..++|++|.+.|-.-+|-+
T Consensus 183 ~~q~dg~~~~~~-~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~ 249 (332)
T PF00456_consen 183 GIQIDGPTDIVF-SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVP 249 (332)
T ss_dssp SEETTEEGGGTH-HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTST
T ss_pred CcccCCCccccc-chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCch
Confidence 999988776543 467889999999999998 99999999998887743 3379999999999999984
No 54
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.50 E-value=4.2e-13 Score=147.36 Aligned_cols=229 Identities=17% Similarity=0.141 Sum_probs=151.5
Q ss_pred CccchHHHHHHhcCCCHH-HHHHHhcCCCC------CCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcc
Q 002419 295 PHRGRLNVLGNVVRKPLR-QIFSEFSGGTR------PVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLE 367 (925)
Q Consensus 295 ~HRgrln~La~vlg~p~~-~ifaEf~G~~~------~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg 367 (925)
-||||..+... |.++. .++.+.+|+.+ |+..+ .+|. ||+. +.+ +....+.+|
T Consensus 14 ~~~gh~~C~GC--G~~~~~~~l~~~lg~~~v~~~~iGC~~~--~~g~----~p~~-~~~------------~~~i~~~~G 72 (300)
T PRK11864 14 FYPGNAACPGC--GAPLGLRYLLKALGEKTVLVIPASCSTV--IQGD----TPKS-PLT------------VPVLHTAFA 72 (300)
T ss_pred ecCCCccCCCC--CCHHHHHHHHHHhCCCeEEEeCCCccce--ecCC----CCcc-ccc------------ccceeehhh
Confidence 38888888766 88887 88889988766 55442 1233 5664 221 122236699
Q ss_pred cccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCC
Q 002419 368 AVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSG 444 (925)
Q Consensus 368 ~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~ 444 (925)
.+.++|.|+++|.+.++++ +..++++.|||++. ++.+ |+|+.| ++| +++||+||++...|-.+.+
T Consensus 73 ~~~~~A~G~a~A~~~~~~~----~~~Vva~~GDG~~~-~~g~-~~l~~A~~~~~~------v~~vv~dN~~~~~TGgQ~S 140 (300)
T PRK11864 73 ATAAVASGIEEALKARGEK----GVIVVGWAGDGGTA-DIGF-QALSGAAERNHD------ILYIMYDNEAYMNTGIQRS 140 (300)
T ss_pred ChHHHHHHHHHHHHhhCCC----CcEEEEEEccCccc-cccH-HHHHHHHHhCcC------EEEEEECCeeeecCCCCCC
Confidence 9999999999998876442 24455599999998 7776 999999 999 9999999999776533221
Q ss_pred c-----------------CcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCC
Q 002419 445 R-----------------SSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEID 506 (925)
Q Consensus 445 r-----------------ss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~D 506 (925)
- ...++..+++++|++.+ +++--|+.++.+++++|++ .+||.||++.+-=..|+- -
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~~--~ 214 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGWR--F 214 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCCC--c
Confidence 1 12456789999999877 6799999999999999985 689999998742222221 1
Q ss_pred CCCCcCHHHHHH------------------------H--HhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 002419 507 EPSFTQPKMYKI------------------------I--RSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFV 560 (925)
Q Consensus 507 dp~ytqp~ey~~------------------------i--~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~ 560 (925)
++..+....-.+ + .+.+-|++-|-+.--.-..+.+|+++++++++.++.+.-..
T Consensus 215 ~~~~~~~~~k~Av~tg~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~ 294 (300)
T PRK11864 215 DPDKTIEIARLAVETGVWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKK 294 (300)
T ss_pred ChHHHHHHHHHHHHcCCceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 111111110000 0 11223555443333333456788888888888777766444
Q ss_pred Hh
Q 002419 561 AS 562 (925)
Q Consensus 561 ~A 562 (925)
.+
T Consensus 295 ~~ 296 (300)
T PRK11864 295 LA 296 (300)
T ss_pred HH
Confidence 33
No 55
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.46 E-value=4.7e-13 Score=139.03 Aligned_cols=124 Identities=20% Similarity=0.233 Sum_probs=109.7
Q ss_pred ccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcc
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g 436 (925)
..|.+.||.++++|+|+|++.++++.+ .-+.++.|||... +|.+|||+..| +|.+ +|-||.-|...
T Consensus 115 e~stGSLGqGLsvavGmAlg~kl~~~~-----~~VyvilGDGEl~-EG~~WEAam~Aah~~L~N-----LiaivD~N~~Q 183 (243)
T COG3959 115 EVSTGSLGQGLSVAVGMALGAKLKGSP-----YRVYVILGDGELD-EGQVWEAAMTAAHYKLDN-----LIAIVDRNKLQ 183 (243)
T ss_pred eecCCcccccchHHHHHHHHHhhcCCC-----ceEEEEecCcccc-cccHHHHHHHHHHhccCc-----EEEEEecCCcc
Confidence 456788999999999999999998776 7899999999998 99999999999 9998 99999999998
Q ss_pred cccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHc-cCCcEEEEEEEee
Q 002419 437 FTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQT-FHSDVVVDLVCYR 498 (925)
Q Consensus 437 ~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~-~~~PvlIe~~tYR 498 (925)
.+..+++..+..++.++-++||+.++.|||+|++++++|...| +. .++|.+|-+.|-+
T Consensus 184 ldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~----~~~~~rP~~IIa~Tvk 242 (243)
T COG3959 184 LDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKA----KGSKGRPTVIIAKTVK 242 (243)
T ss_pred cCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhh----hccCCCCeEEEEeccc
Confidence 8877777788889999999999999999999999999865554 34 3399999998753
No 56
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.43 E-value=1.2e-09 Score=132.93 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=112.0
Q ss_pred ccCCcccccceeehhhhhhhhhcCC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcc
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g 436 (925)
..+.||.++++|+|+|++.++.... .+..+.-++|++|||.+. ||.+||++.+| +|.+ +|+||.+|.+.
T Consensus 187 sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEld-EG~swEA~~~Aa~~kLdN-----Li~IVD~N~~q 260 (885)
T TIGR00759 187 PTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMD-EPESKGAITFAAREKLDN-----LTFVINCNLQR 260 (885)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhc-cHHHHHHHHHHHHhCCCC-----EEEEEeCCCCc
Confidence 3456999999999999999973221 123346799999999999 99999999999 9998 99999999999
Q ss_pred cccCCCCCcC-cccHHHHHhhcCccEEEE---------------------------------------------------
Q 002419 437 FTTDPMSGRS-SQYCTDVAKALDAPIFHV--------------------------------------------------- 464 (925)
Q Consensus 437 ~tT~~~~~rs-s~~~~d~Aka~giP~~~V--------------------------------------------------- 464 (925)
+..+.+..-. ...+.++.+++|+.++.|
T Consensus 261 lDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~ 340 (885)
T TIGR00759 261 LDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPE 340 (885)
T ss_pred cCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHH
Confidence 9888765332 457899999999999999
Q ss_pred ------------------eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 465 ------------------NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 465 ------------------dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
||+|+++|++|.+.|.+ ..++|++|-+.|-.-+|-.
T Consensus 341 l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 341 LKALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEEEEEeeeecCCCC
Confidence 69999999999888774 2358999999999998876
No 57
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.41 E-value=1.6e-12 Score=146.22 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=112.6
Q ss_pred ccCCcccccceeehhhhhhhhhcC--CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcc
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYSN--DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~--d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g 436 (925)
.++.||.++++|+|+|+|.++... .....+.-++|++|||.++ +|++||++++| +|.+ +|.||.+|++.
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~-EG~vwEA~~~Ag~~kL~N-----LivIvD~N~~q 189 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMD-EPESLGAIGLAAREKLDN-----LIFVVNCNLQR 189 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccc-cHHHHHHHHHHHHhCCCC-----EEEEEECCCCc
Confidence 567799999999999999997321 0111346799999999999 99999999999 8987 99999999999
Q ss_pred cccCCCCC-cCcccHHHHHhhcCccEEEEe--------------------------------------------------
Q 002419 437 FTTDPMSG-RSSQYCTDVAKALDAPIFHVN-------------------------------------------------- 465 (925)
Q Consensus 437 ~tT~~~~~-rss~~~~d~Aka~giP~~~Vd-------------------------------------------------- 465 (925)
+..+.... ....++.++.++||+.++.||
T Consensus 190 idG~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~ 269 (386)
T cd02017 190 LDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPE 269 (386)
T ss_pred cCCcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHH
Confidence 98887763 245789999999999999998
Q ss_pred -------------------CCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 466 -------------------GDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 466 -------------------G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
|+|++++++|+..|.+ .-++|++|-+.|-.-+|-.
T Consensus 270 ~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~---~~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 270 LKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE---HKGKPTVILAKTIKGYGLG 323 (386)
T ss_pred HHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh---CCCCCeEEEEeCeecCCCC
Confidence 9999999998877653 2368999999999988875
No 58
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.24 E-value=1.4e-11 Score=123.07 Aligned_cols=110 Identities=23% Similarity=0.176 Sum_probs=85.6
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT 439 (925)
.+.+|.++|.|+|+++|.+. ..+++++|||++. . ..++|+.+ ++| +++||.||+....+
T Consensus 45 ~g~~G~~~~~a~Gaa~a~~~---------~~vv~~~GDG~~~-~--~~~~l~ta~~~~~~------~~~iv~nN~~~~~~ 106 (168)
T cd00568 45 FGAMGYGLPAAIGAALAAPD---------RPVVCIAGDGGFM-M--TGQELATAVRYGLP------VIVVVFNNGGYGTI 106 (168)
T ss_pred chhhhhhHHHHHHHHHhCCC---------CcEEEEEcCcHHh-c--cHHHHHHHHHcCCC------cEEEEEECCccHHH
Confidence 36799999999999999762 5689999999997 5 44667666 999 99999999965544
Q ss_pred CCC-----------CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 DPM-----------SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~~~-----------~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... ......++..+|++||+++++|++ ++++.++.+.|. +.++|+|||+.|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 107 RMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred HHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 321 122345789999999999999985 677766555554 678999999975
No 59
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.20 E-value=5.7e-11 Score=120.49 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=83.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|..+|.|+|+++|.+. ..++|+.|||+|.-.+...+++..-+|| +++||.||+ |++.....
T Consensus 48 g~mG~~lp~AiGa~la~~~---------~~vv~i~GDG~f~~~~~el~ta~~~~lp------v~ivv~NN~~~~~~~~~~ 112 (172)
T cd02004 48 GTLGVGLGYAIAAALARPD---------KRVVLVEGDGAFGFSGMELETAVRYNLP------IVVVVGNNGGWYQGLDGQ 112 (172)
T ss_pred CcccchHHHHHHHHHhCCC---------CeEEEEEcchhhcCCHHHHHHHHHcCCC------EEEEEEECcccccchhhh
Confidence 5599999999999998753 5789999999997333333333333999 888887775 88875322
Q ss_pred CC-----------cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 443 SG-----------RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 443 ~~-----------rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. ....+...+|++||++.++|+ +++++..+.+.|. +.++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 171 (172)
T cd02004 113 QLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRAL----ASGKPALINVII 171 (172)
T ss_pred hhhccCCCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----HcCCCEEEEEEc
Confidence 21 134678999999999999998 5888877766665 357999999975
No 60
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.20 E-value=5.3e-11 Score=121.03 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|.+. ..++|+.|||+|. .+. .|....+ ++| +++||.||+ |++++.
T Consensus 49 g~mG~~lp~aiGaala~~~---------~~vv~i~GDG~f~-~~~-~el~ta~~~~~p------~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 49 GGLGWGLPAAVGAALANPD---------RKVVAIIGDGSFM-YTI-QALWTAARYGLP------VTVVILNNRGYGALRS 111 (178)
T ss_pred ccccchHHHHHHHHhcCCC---------CeEEEEEcCchhh-ccH-HHHHHHHHhCCC------eEEEEEcCccHHHHHH
Confidence 7799999999999999752 5799999999997 553 4544444 999 999999997 887642
Q ss_pred CC-----------------CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PM-----------------SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~-----------------~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. ......++.++|++||++.++|++ ++++.++.++|++ .++|+|||+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 112 FLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred HHHHHcCCCcccccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11 001236789999999999999986 8888887777764 57899999863
No 61
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.16 E-value=2e-10 Score=117.99 Aligned_cols=113 Identities=17% Similarity=0.121 Sum_probs=84.4
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCC-cchHHHHHHhcCCCCCCcccEEEE-EEeCCcccccC
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAG-QGVVYETLHLSALPNYSIGGTIHI-VVNNQVAFTTD 440 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sG-qG~v~EalnlA~LP~y~~GGvI~v-V~NNq~g~tT~ 440 (925)
-+.+|..+|.|+|+++|.+ ..+||+.|||+|.- .+.++++.++..+| +++| +.||+|++...
T Consensus 41 ~g~mG~~lp~AiGaala~~----------~~vv~i~GDG~f~m~~~el~ta~~~~~~~------l~vvV~NN~~~~~~~~ 104 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP----------RKVIVIDGDGSLLMNLGALATIAAEKPKN------LIIVVLDNGAYGSTGN 104 (179)
T ss_pred ccchhhHHHHHHHHHhcCC----------CcEEEEECCcHHHhCHHHHHHHHHcCCCC------EEEEEEcCccccccCC
Confidence 3669999999999999964 24899999999931 56666666554455 5555 55666887653
Q ss_pred CCCCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 PMSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ~~~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
..... ...++..+|++||++.+.|+| +++++..+.++|. ++|++||+.+-+
T Consensus 105 ~~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 105 QPTHAGKKTDLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CCCCCCCCCCHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 22212 246789999999999999998 7888888776664 689999999954
No 62
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.15 E-value=5.5e-11 Score=123.58 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=89.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|.+. ..+||+.|||+|. -...|-.+.+ +|| +|+||.||+ ||+...
T Consensus 53 g~mG~~lpaaiGa~la~p~---------r~vv~i~GDG~f~--m~~~eL~Ta~~~~lp------vi~vV~NN~~yg~~~~ 115 (196)
T cd02013 53 GNCGYALPAIIGAKAAAPD---------RPVVAIAGDGAWG--MSMMEIMTAVRHKLP------VTAVVFRNRQWGAEKK 115 (196)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHHh--ccHHHHHHHHHhCCC------eEEEEEECchhHHHHH
Confidence 5589999999999998653 4689999999997 3567766666 999 888886665 776531
Q ss_pred C-----C-----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 441 P-----M-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 441 ~-----~-----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
. . ......+++.+|++||++.++|+ +++++..+.++|++.++. ++|+|||+.+.+.
T Consensus 116 ~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 116 NQVDFYNNRFVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred HHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 0 0 01124688999999999999998 589998888888865444 7899999998653
No 63
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.09 E-value=2.9e-10 Score=116.27 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=85.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|.++|.|+|+++|.+. ..+|++.|||+|. .+ +.|-.+.+ ++| +++||.||+ ||+.+.
T Consensus 51 g~mG~~~~~aiGa~~a~~~---------~~vv~i~GDG~f~-~~-~~el~t~~~~~lp------~~~iv~NN~~~~~~~~ 113 (178)
T cd02014 51 ATMGNGLPGAIAAKLAYPD---------RQVIALSGDGGFA-ML-MGDLITAVKYNLP------VIVVVFNNSDLGFIKW 113 (178)
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEcchHHH-hh-HHHHHHHHHhCCC------cEEEEEECCchhHHHH
Confidence 5589999999999998642 5799999999997 55 78876666 999 999999996 776321
Q ss_pred -------CCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 -------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 -------~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
+... ....++..+|++||++.+.|+ +++++..+.+.|. +.++|+|||+.+-+
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~----~~~~p~liev~~~~ 174 (178)
T cd02014 114 EQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEAL----AADGPVVIDVVTDP 174 (178)
T ss_pred HHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 0001 123578899999999999987 6777766555554 46899999999843
No 64
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.03 E-value=3.8e-10 Score=117.74 Aligned_cols=116 Identities=22% Similarity=0.207 Sum_probs=88.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|..+|.|+|+++|.+. .-+||+.|||+|.-.+.-.+|+---+|| +++||.||+ ||+.....
T Consensus 57 GsmG~~lpaaiGa~la~p~---------~~vv~i~GDG~f~m~~~eL~Ta~~~~lp------viivV~NN~~yg~~~~~q 121 (202)
T cd02006 57 GPLGWTVPAALGVAAADPD---------RQVVALSGDYDFQFMIEELAVGAQHRIP------YIHVLVNNAYLGLIRQAQ 121 (202)
T ss_pred cchhhhhHHHHhHHhhCCC---------CeEEEEEeChHhhccHHHHHHHHHhCCC------eEEEEEeCchHHHHHHHH
Confidence 5599999999999999753 4689999999997555445554444999 899988888 67532100
Q ss_pred ------------CCc--------CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 443 ------------SGR--------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 443 ------------~~r--------ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... ...+.+.+|++||++.++|+ +++++..+.+.|++..++.++|+|||+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i 193 (202)
T cd02006 122 RAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAIL 193 (202)
T ss_pred HHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEe
Confidence 000 13678999999999999997 68888888888886554457899999987
No 65
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.00 E-value=1.7e-09 Score=108.93 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=84.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc-CCCCCCcccEEEEEEeCC-cccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQ-VAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA-~LP~y~~GGvI~vV~NNq-~g~tT~~ 441 (925)
+.+|.++|.|+|+++|.+ .-+||+.|||+|.-.....+|+..- ++| +++||.||+ ||++...
T Consensus 42 gsmG~~lp~AiGa~~a~~----------~~Vv~i~GDG~f~m~~~el~t~~~~~~~~------i~~vV~nN~~~g~~~~~ 105 (157)
T cd02001 42 GSMGLAGSIGLGLALGLS----------RKVIVVDGDGSLLMNPGVLLTAGEFTPLN------LILVVLDNRAYGSTGGQ 105 (157)
T ss_pred cchhhHHHHHHHHHhcCC----------CcEEEEECchHHHhcccHHHHHHHhcCCC------EEEEEEeCccccccCCc
Confidence 459999999999999863 2489999999995344445555444 599 888887776 6765421
Q ss_pred CCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 ~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.......+++.+|++||++.++|+ +++++.++.+.|++ .++|++||+.+
T Consensus 106 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i 154 (157)
T cd02001 106 PTPSSNVNLEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPI 154 (157)
T ss_pred CCCCCCCCHHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 111224789999999999999885 79999998888875 47899999987
No 66
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.00 E-value=1.7e-09 Score=111.35 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=82.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-ccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT~ 440 (925)
+.+|..+|.|+|+++|.+. ..+|++.|||+|. ..+.|-...+ +|| +++||.||+. ++...
T Consensus 50 g~mG~~lp~aiGa~la~~~---------~~vv~i~GDG~f~--~~~~eL~ta~~~~lp------i~ivV~nN~~~~~~~~ 112 (186)
T cd02015 50 GTMGFGLPAAIGAKVARPD---------KTVICIDGDGSFQ--MNIQELATAAQYNLP------VKIVILNNGSLGMVRQ 112 (186)
T ss_pred cchhchHHHHHHHHHhCCC---------CeEEEEEcccHHh--ccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 5699999999999998652 5689999999997 4456643334 999 8888888884 54321
Q ss_pred ------CC-----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 ------PM-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ------~~-----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
.. ......+++.+|++||++.++|++ ++++.++.+.|. +.++|+|||+.+-+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 113 WQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred HHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 00 011236789999999999999985 666666555554 56899999999854
No 67
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.00 E-value=1.7e-09 Score=110.74 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=85.2
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
-+.+|..+|.|+|+++|.+. .-+|++.|||+|.-.| ..|....+ ++| +++||.||+ ||++.
T Consensus 50 ~g~mG~gl~~AiGa~la~p~---------~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~------i~vvV~nN~~~g~~~ 113 (178)
T cd02008 50 CTCMGASIGVAIGMAKASED---------KKVVAVIGDSTFFHSG-ILGLINAVYNKAN------ITVVILDNRTTAMTG 113 (178)
T ss_pred cccCccHHHHHhhHHhhCCC---------CCEEEEecChHHhhcc-HHHHHHHHHcCCC------EEEEEECCcceeccC
Confidence 36799999999999999763 4589999999996233 45555544 999 777777776 56543
Q ss_pred CCCC--------C-cCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 DPMS--------G-RSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~~~~--------~-rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.... . ....++..+|++||++.++| |++|++++.++.+.|.+ .++|+||++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 114 GQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred CCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 2110 0 01357899999999999999 88999988888777763 57899999864
No 68
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.99 E-value=4.9e-10 Score=111.46 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=86.0
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
-+.+|..+|.|+|+++|.+. ..+|++.|||+|.-. ..|-.+.+ ++| +++||.||+ ||++.
T Consensus 27 ~g~mG~~~~~aiGa~~a~p~---------~~vv~i~GDG~f~~~--~~el~ta~~~~~~------v~~vv~nN~~~~~~~ 89 (153)
T PF02775_consen 27 FGSMGYALPAAIGAALARPD---------RPVVAITGDGSFLMS--LQELATAVRYGLP------VVIVVLNNGGYGMTG 89 (153)
T ss_dssp TT-TTTHHHHHHHHHHHSTT---------SEEEEEEEHHHHHHH--GGGHHHHHHTTSS------EEEEEEESSBSHHHH
T ss_pred ccccCCHHHhhhHHHhhcCc---------ceeEEecCCcceeec--cchhHHHhhccce------EEEEEEeCCcceEec
Confidence 36699999999999998543 679999999999733 55554444 999 888888887 55542
Q ss_pred C----CCC---------CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q 002419 440 D----PMS---------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 440 ~----~~~---------~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
. ... .....++..+|+++|+++++|+..|++++.++.++|+ +.++|+|||+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred cccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 1 111 1334678999999999999999888899999888887 5789999996
No 69
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.96 E-value=3.1e-09 Score=110.11 Aligned_cols=116 Identities=19% Similarity=0.143 Sum_probs=82.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|..+|.|+|+++|.+. .-+||+.|||+|.-......++..-++|. +++||.||+ ||+.....
T Consensus 48 g~mG~~lpaAiGaala~p~---------~~Vv~i~GDG~f~m~~~eL~ta~~~~l~~-----i~ivV~NN~~yg~~~~~~ 113 (188)
T cd03371 48 GSMGHASQIALGIALARPD---------RKVVCIDGDGAALMHMGGLATIGGLAPAN-----LIHIVLNNGAHDSVGGQP 113 (188)
T ss_pred CccccHHHHHHHHHHhCCC---------CcEEEEeCCcHHHhhccHHHHHHHcCCCC-----cEEEEEeCchhhccCCcC
Confidence 6799999999999999752 45899999999953332233332236632 788888887 56543211
Q ss_pred CCcCcccHHHHHhhcCccE-EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 443 SGRSSQYCTDVAKALDAPI-FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 443 ~~rss~~~~d~Aka~giP~-~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
......+.+.+|++||++. .+|+ +++++.++.++|++ .++|+|||+.+=+.
T Consensus 114 ~~~~~~d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~ 165 (188)
T cd03371 114 TVSFDVSLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPG 165 (188)
T ss_pred CCCCCCCHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCC
Confidence 1112368999999999997 5787 89999888887763 57899999999443
No 70
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.96 E-value=2.4e-09 Score=110.22 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=84.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCcccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~g~tT~~ 441 (925)
+.+|..+|.|+|+++|.+. ..+|++.|||+|. ..++|..+.+ ++|- +|+|+.||+|++....
T Consensus 50 g~mG~~l~~aiGaala~~~---------~~vv~i~GDG~f~--~~~~el~ta~~~~~p~-----~ivV~nN~~~~~~~~~ 113 (183)
T cd02005 50 GSIGYSVPAALGAALAAPD---------RRVILLVGDGSFQ--MTVQELSTMIRYGLNP-----IIFLINNDGYTIERAI 113 (183)
T ss_pred hhHhhhHHHHHHHHHhCCC---------CeEEEEECCchhh--ccHHHHHHHHHhCCCC-----EEEEEECCCcEEEEEe
Confidence 4589999999999998753 5799999999995 5678877766 8993 4555555557864321
Q ss_pred CC------CcCcccHHHHHhhcC----ccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 442 MS------GRSSQYCTDVAKALD----APIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 442 ~~------~rss~~~~d~Aka~g----iP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
.. .....++..+|++|| +++++|+ +++++.++.++|++ ..++|+|||+.+.|
T Consensus 114 ~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 114 HGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCcCcccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 11 112357889999999 7888885 78999888777775 25789999999854
No 71
>PRK07524 hypothetical protein; Provisional
Probab=98.94 E-value=1.9e-09 Score=127.76 Aligned_cols=115 Identities=18% Similarity=0.133 Sum_probs=89.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeC-Cccccc-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNN-QVAFTT- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NN-q~g~tT- 439 (925)
+.+|..+|.|+|+++|... ..+||+.|||+|. ..+.|-...+ +|| +++||.|| .||+..
T Consensus 407 g~mG~~lp~aiGa~lA~p~---------~~vv~i~GDG~f~--~~~~el~ta~~~~lp------i~~vV~NN~~~g~i~~ 469 (535)
T PRK07524 407 GTLGYGLPAAIGAALGAPE---------RPVVCLVGDGGLQ--FTLPELASAVEADLP------LIVLLWNNDGYGEIRR 469 (535)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHHh--hhHHHHHHHHHhCCC------eEEEEEECCchHHHHH
Confidence 5699999999999999642 5799999999996 4456643333 999 89988888 577542
Q ss_pred --------CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCC
Q 002419 440 --------DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFG 501 (925)
Q Consensus 440 --------~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~G 501 (925)
+.......+++..+|++||+++++|+ |++++..+.+.|+ +.++|+|||+.++|+.|
T Consensus 470 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~~~ 533 (535)
T PRK07524 470 YMVARDIEPVGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAF----ARPGPTLIEVDQACWFA 533 (535)
T ss_pred HHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCcccc
Confidence 11111234678999999999999996 8888888777776 46899999999999876
No 72
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.92 E-value=3.1e-09 Score=108.86 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=83.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|.-. ..|-...+ +|| +|+||.||+ ||+...
T Consensus 48 g~mG~~lp~aiGa~la~~~---------~~vv~i~GDG~f~m~--~~eL~ta~~~~l~------vi~vV~NN~~~g~~~~ 110 (177)
T cd02010 48 ATMGVALPGAIGAKLVYPD---------RKVVAVSGDGGFMMN--SQELETAVRLKIP------LVVLIWNDNGYGLIKW 110 (177)
T ss_pred hhhhhHHHHHHHHHHhCCC---------CcEEEEEcchHHHhH--HHHHHHHHHHCCC------eEEEEEECCcchHHHH
Confidence 4589999999999998642 569999999999633 34444444 999 787777776 776531
Q ss_pred ---------CCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 ---------PMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ---------~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
........+++.+|++||++.++|+ +++++..+.++|++ .++|+|||+.+-+
T Consensus 111 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 111 KQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred HHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 0001123578899999999999996 78999888877764 5799999999843
No 73
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.89 E-value=2.7e-09 Score=111.71 Aligned_cols=112 Identities=17% Similarity=0.124 Sum_probs=82.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|.+. .-+|++.|||+|.-. ..|-...+ +|| +++||.||+ ||+...
T Consensus 48 gsmG~~lpaAiGa~la~p~---------~~vv~i~GDGsf~m~--~~eL~Ta~~~~lp------v~ivV~NN~~~g~~~~ 110 (205)
T cd02003 48 SCMGYEIAAGLGAKLAKPD---------REVYVLVGDGSYLML--HSEIVTAVQEGLK------IIIVLFDNHGFGCINN 110 (205)
T ss_pred chhhhHHHHHHHHHHhCCC---------CeEEEEEccchhhcc--HHHHHHHHHcCCC------CEEEEEECCccHHHHH
Confidence 5589999999999998652 568999999999733 34444444 999 666666665 675321
Q ss_pred -------CCC-----C-----------cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 -------PMS-----G-----------RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 -------~~~-----~-----------rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
... . -...++..+|++||++.++|+ |++++..|.+.|+ +.++|+|||+.+=
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIeV~v~ 184 (205)
T cd02003 111 LQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAK----ASDRTTVIVIKTD 184 (205)
T ss_pred HHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEee
Confidence 000 0 113688999999999999995 8999988887776 4588999999984
Q ss_pred e
Q 002419 498 R 498 (925)
Q Consensus 498 R 498 (925)
+
T Consensus 185 ~ 185 (205)
T cd02003 185 P 185 (205)
T ss_pred c
Confidence 3
No 74
>PRK06163 hypothetical protein; Provisional
Probab=98.89 E-value=1.2e-08 Score=107.03 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=83.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc-CCCCCCcccEEEEEEeCC-cccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQ-VAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA-~LP~y~~GGvI~vV~NNq-~g~tT~~ 441 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|.-...-.+|+..- ++| +++||.||+ ||+.-..
T Consensus 57 GsMG~glpaAiGaalA~p~---------r~Vv~i~GDG~f~m~~~eL~Ta~~~~~lp------i~ivV~NN~~yg~~~~~ 121 (202)
T PRK06163 57 GSMGLAFPIALGVALAQPK---------RRVIALEGDGSLLMQLGALGTIAALAPKN------LTIIVMDNGVYQITGGQ 121 (202)
T ss_pred cccccHHHHHHHHHHhCCC---------CeEEEEEcchHHHHHHHHHHHHHHhcCCC------eEEEEEcCCchhhcCCc
Confidence 4599999999999999653 4589999999995333334444222 689 888888885 7864321
Q ss_pred CC-CcCcccHHHHHhhcCcc-EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 442 MS-GRSSQYCTDVAKALDAP-IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 442 ~~-~rss~~~~d~Aka~giP-~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.. .....++..+|++||++ .++|+ +++++..+.+.|++ .++|+|||+.+-
T Consensus 122 ~~~~~~~~Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 173 (202)
T PRK06163 122 PTLTSQTVDVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRID 173 (202)
T ss_pred cCCCCCCCCHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 11 11236789999999998 67886 78888888777763 588999999884
No 75
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.88 E-value=5.9e-09 Score=124.73 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=89.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-Cccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~tT 439 (925)
+.+|..+|.|+|+++|... ..+||+.|||+|. .+...+.|+.+ +|| +++||.|| +||+..
T Consensus 430 gsmG~~lp~aiGa~la~p~---------~~vv~i~GDG~f~-~~~~e~~l~ta~~~~l~------~~ivv~NN~~yg~~~ 493 (569)
T PRK08327 430 GGLGWALGAALGAKLATPD---------RLVIATVGDGSFI-FGVPEAAHWVAERYGLP------VLVVVFNNGGWLAVK 493 (569)
T ss_pred CCCCcchHHHHHHhhcCCC---------CeEEEEecCccee-ecCcHHHHHHHHHhCCC------EEEEEEeCcccccch
Confidence 4599999999999998542 5799999999997 55432234433 999 88888888 577642
Q ss_pred C----------------C-CCCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 D----------------P-MSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~----------------~-~~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. . .... ...+++.+|++||+++++|+ +++++..+++.|++.++++++|+|||+.+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 494 EAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred hHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 1 0 0011 34578899999999999998 99999999999998888888999999975
No 76
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.86 E-value=7.6e-09 Score=111.20 Aligned_cols=118 Identities=22% Similarity=0.342 Sum_probs=80.9
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT 439 (925)
.+|-++.++.|+|+|.|+.+.+.+ .-+|+++||||+. -|..+|+||-+ +-+ +|.|+.+|+..|+-
T Consensus 110 ~GHsstsiSaa~Gma~ar~l~~~~-----~~vVaVIGDGalt-~Gma~EALN~~g~~~~~------liVILNDN~mSIs~ 177 (270)
T PF13292_consen 110 AGHSSTSISAALGMAVARDLKGED-----RKVVAVIGDGALT-GGMAFEALNNAGHLKSN------LIVILNDNEMSISP 177 (270)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHTS--------EEEEEETTGGG-SHHHHHHHHHHHHHT-S------EEEEEEE-SBSSSB
T ss_pred CCccHhHHHHHHHHHHHHHhcCCC-----CcEEEEECCcchh-HHHHHHHHHHHHhcCCC------EEEEEeCCCcccCC
Confidence 478999999999999999998765 7799999999999 99999999999 777 99999999999875
Q ss_pred CCC-------CCcCccc------------------------HHHHHhh--------cCccEE-EEeCCCHHHHHHHHHHH
Q 002419 440 DPM-------SGRSSQY------------------------CTDVAKA--------LDAPIF-HVNGDDMEAVAHVCELA 479 (925)
Q Consensus 440 ~~~-------~~rss~~------------------------~~d~Aka--------~giP~~-~VdG~D~eAV~~a~~~A 479 (925)
+.. .-++++. ..+-.|. +|+..+ .|||+|++++.++.+.+
T Consensus 178 nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~ 257 (270)
T PF13292_consen 178 NVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENA 257 (270)
T ss_dssp --SSHCCC-------------------------------------------CCCHHCT-EEEEEEETT-HHHHHHHHHHH
T ss_pred CcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHH
Confidence 421 1111100 0111222 366655 57999999999866655
Q ss_pred HHHHHccCCcEEEEEEE
Q 002419 480 AEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 480 ~e~rr~~~~PvlIe~~t 496 (925)
. +.++||||+++|
T Consensus 258 K----~~~gPvllHV~T 270 (270)
T PF13292_consen 258 K----DIDGPVLLHVIT 270 (270)
T ss_dssp C----CSSSEEEEEEE-
T ss_pred h----cCCCCEEEEEeC
Confidence 4 679999999987
No 77
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.85 E-value=1e-08 Score=105.60 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=80.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcC-CCCCCcccEEEEEEeCC-cccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSA-LPNYSIGGTIHIVVNNQ-VAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~-LP~y~~GGvI~vV~NNq-~g~tT~~ 441 (925)
+.+|..+|.|+|+++|. . .-+||+.|||+|.-.....+++.-.+ +| +++||.||+ ||+.-..
T Consensus 42 gsmG~~lpaAiGa~la~-~---------~~Vv~i~GDG~f~m~~~el~ta~~~~~~p------v~~vV~NN~~yg~~~~q 105 (181)
T TIGR03846 42 GSMGLASSIGLGLALAT-D---------RTVIVIDGDGSLLMNLGVLPTIAAESPKN------LILVILDNGAYGSTGNQ 105 (181)
T ss_pred cccccHHHHHHHHHHcC-C---------CcEEEEEcchHHHhhhhHHHHHHHhCCCC------eEEEEEeCCccccccCc
Confidence 55899999999999996 2 45999999999973333333433237 58 888888888 6765421
Q ss_pred CCCc-CcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 442 MSGR-SSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 442 ~~~r-ss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.... ...+++.+|++||++..+ | .+++++..+.+ |+ +.++|+|||+.+-
T Consensus 106 ~~~~~~~~d~~~lA~a~G~~~~~~v--~~~~~l~~al~-a~----~~~~p~li~v~~~ 156 (181)
T TIGR03846 106 PTPASRRTDLELVAKAAGIRNVEKV--ADEEELRDALK-AL----AMKGPTFIHVKVK 156 (181)
T ss_pred CCCCCCCCCHHHHHHHCCCCeEEEe--CCHHHHHHHHH-HH----cCCCCEEEEEEeC
Confidence 1111 246789999999999998 6 47888877664 44 4578999999883
No 78
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.85 E-value=8.2e-09 Score=123.58 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=86.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|.++|.|+|+++|.+. ..+|++.|||+|. ..++|-.+.. +|| +++||.||+ |++...
T Consensus 422 gsmG~~lp~aiGa~lA~p~---------~~vv~i~GDG~f~--~~~~el~Ta~~~~lp------i~~vV~NN~~~~~~~~ 484 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAKEE---------ELVICIAGDASFQ--MNIQELQTIAENNIP------VKVFIINNKFLGMVRQ 484 (570)
T ss_pred ccccchhhHHHhhHhhcCC---------CeEEEEEecchhh--ccHHHHHHHHHhCCC------eEEEEEECCccHHHHH
Confidence 6799999999999999653 5699999999996 5567766666 999 999999998 565321
Q ss_pred C---------C-CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 P---------M-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~---------~-~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. . ......+++.+|++||+++.+|+ |++++..+.+.|. +.++|+|||+.+
T Consensus 485 ~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~~p~liev~i 544 (570)
T PRK06725 485 WQEMFYENRLSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAF----AHEGPVVVDFCV 544 (570)
T ss_pred HHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEe
Confidence 0 0 01124678999999999999995 8888877776665 458999999998
No 79
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.82 E-value=1.8e-08 Score=104.83 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=84.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|... ..+|++.|||++- +-.+.|..+.+ ++| +++||.||+ ||++..
T Consensus 51 g~mG~glpaAiGa~la~p~---------r~Vv~i~GDGs~f-~m~~~eL~ta~~~~lp------v~iiVlnN~~yg~~~~ 114 (193)
T cd03375 51 TLHGRALAVATGVKLANPD---------LTVIVVSGDGDLA-AIGGNHFIHAARRNID------ITVIVHNNQIYGLTKG 114 (193)
T ss_pred hhhccHHHHHHHHHHhCCC---------CeEEEEeccchHh-hccHHHHHHHHHhCCC------eEEEEEcCcccccCCC
Confidence 4589999999999998653 5699999999942 33355555555 999 888888887 677642
Q ss_pred CCC-C---------------cCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PMS-G---------------RSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~~-~---------------rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... . ....++..+|+++|++.+ ++.-.+++++..+.++|++ .++|+|||+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 115 QASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred ccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 110 0 012578899999999986 2455689999888888874 58899999974
No 80
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.78 E-value=1.5e-08 Score=108.55 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=85.9
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
.+.+|.++|.|+|++.|.+. ..+|++.|||++. +-.+.|-.+.+ ++| +++||.||+ ||++.
T Consensus 61 ~gsmG~GlpaAiGa~~a~p~---------r~VV~i~GDG~~~-~m~~~eL~ta~~~~~p------v~~vVlNN~~yg~tg 124 (235)
T cd03376 61 AAAVASGIEAALKALGRGKD---------ITVVAFAGDGGTA-DIGFQALSGAAERGHD------ILYICYDNEAYMNTG 124 (235)
T ss_pred HHHHHHHHHHHHHHhccCCC---------CeEEEEEcCchHH-hhHHHHHHHHHHcCCC------eEEEEECCcccccCC
Confidence 35788899999988766432 5699999999963 45567766666 999 999999998 57532
Q ss_pred CCC------C---------------CcCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 DPM------S---------------GRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~~~------~---------------~rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
-.. . .....++..+|+++|++.+. ++..+++++.++.++|++ ..+|+|||+.+
T Consensus 125 ~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 125 IQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 100 0 01225788999999999874 677899999998888875 57899999975
No 81
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.77 E-value=1.3e-08 Score=103.89 Aligned_cols=109 Identities=19% Similarity=0.132 Sum_probs=81.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|. . .-+|++.|||+|. -...|-.+.+ ++| +++||.||+ ||+...
T Consensus 51 g~mG~~l~~aiGa~la~-~---------~~Vv~i~GDGsf~--m~~~eL~ta~~~~l~------v~ivVlNN~~~g~~~~ 112 (175)
T cd02009 51 SGIDGTLSTALGIALAT-D---------KPTVLLTGDLSFL--HDLNGLLLGKQEPLN------LTIVVINNNGGGIFSL 112 (175)
T ss_pred cchhhHHHHHHHHHhcC-C---------CCEEEEEehHHHH--HhHHHHHhccccCCC------eEEEEEECCCCchhee
Confidence 45899999999999995 1 3488999999996 3355655555 899 888888887 664221
Q ss_pred CCC---------Cc---CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PMS---------GR---SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~~---------~r---ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... .. ...++..+|++||++.++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 113 LPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred ccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 100 00 14578899999999999997 78888887777763 58899999975
No 82
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.77 E-value=2.4e-08 Score=119.83 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=85.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT- 439 (925)
+.+|.++|.|+|+++|... ..+||+.|||+|. -...|....+ +|| +++||.||+ ||+..
T Consensus 408 gsmG~~~paAiGa~la~p~---------~~vv~i~GDGsf~--~~~~el~Ta~~~~lp------v~~vV~NN~~~g~i~~ 470 (578)
T PRK06546 408 GSMANALPHAIGAQLADPG---------RQVISMSGDGGLS--MLLGELLTVKLYDLP------VKVVVFNNSTLGMVKL 470 (578)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEcCchHh--hhHHHHHHHHHhCCC------eEEEEEECCccccHHH
Confidence 5599999999999999753 5699999999997 3445554444 999 888888888 47541
Q ss_pred ----C--CCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 ----D--PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ----~--~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. .... ....++..+|++||++.++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 471 ~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~ 529 (578)
T PRK06546 471 EMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVT 529 (578)
T ss_pred HHHhcCCCcccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 1111 124678999999999999997 89999887777764 68999999987
No 83
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=98.76 E-value=2.2e-08 Score=109.76 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=83.7
Q ss_pred cccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+|..+|.|+|+++|... ..+|++.|||++. .-...|+...+ ++| +++||.||+ ||++....
T Consensus 70 ~G~alPaAiGaklA~Pd---------r~VV~i~GDG~f~-~~g~~el~ta~r~nlp------i~iIV~NN~~yGmt~~Q~ 133 (277)
T PRK09628 70 HGRAVAYATGIKLANPD---------KHVIVVSGDGDGL-AIGGNHTIHGCRRNID------LNFILINNFIYGLTNSQT 133 (277)
T ss_pred cccHHHHHHHHHHHCCC---------CeEEEEECchHHH-HhhHHHHHHHHHhCcC------eEEEEEEChHHhcceecc
Confidence 68999999999999753 5699999999985 33366776666 999 999999998 58753100
Q ss_pred --------------CCc--CcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 443 --------------SGR--SSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 443 --------------~~r--ss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... ...++..+|+++|++.+ +..-.+++++..+.+.|++ .++|+|||+.+
T Consensus 134 ~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 134 SPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred cCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 011 12356999999999986 3444589999888888875 58999999974
No 84
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=98.73 E-value=2.9e-08 Score=106.47 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=84.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
..+|.++|.|+|+++|+-.... .+..+||+.|||++. +--+.|.++.. ++| +++||.||+ ||++-.
T Consensus 64 g~mG~GlpaAiGA~~a~~~~~~----p~~~Vv~i~GDG~~~-~~g~~~l~ta~~~~l~------i~ivVlNN~~yg~~~~ 132 (237)
T cd02018 64 NAVASGLKRGLKARFPKDRELD----KKKDVVVIGGDGATY-DIGFGALSHSLFRGED------ITVIVLDNEVYSNTGG 132 (237)
T ss_pred HHHHHHHHHHHHhhcccccccC----CCCcEEEEeCchHHH-hccHHHHHHHHHcCCC------eEEEEECCccccCCCC
Confidence 6689999999999888221111 125699999999874 22244555544 999 899999998 576521
Q ss_pred CCC----------------CcCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PMS----------------GRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~~----------------~rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... .....++..+|+++|++.++ |+=.+++++..|.++|++ +.++|+|||+.+
T Consensus 133 q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 133 QRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 110 11236799999999999986 344578999888888774 368899999985
No 85
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.71 E-value=4.3e-08 Score=117.85 Aligned_cols=117 Identities=23% Similarity=0.200 Sum_probs=90.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|.++|.|+|+++|.+. .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+-...
T Consensus 419 G~mG~glpaAiGa~la~p~---------r~Vv~i~GDG~f~m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~i~~~~ 483 (591)
T PRK11269 419 GPLGWTIPAALGVRAADPD---------RNVVALSGDYDFQFLIEELAVGAQFNLP------YIHVLVNNAYLGLIRQAQ 483 (591)
T ss_pred ccccchhhhHHhhhhhCCC---------CcEEEEEccchhhcCHHHHHHHHHhCCC------eEEEEEeCCchhHHHHHH
Confidence 5699999999999999653 4699999999997555555665555999 888998888 6642110
Q ss_pred -----------CCC--c------CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 442 -----------MSG--R------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 442 -----------~~~--r------ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
... . ...+++.+|++||+++.+|. +++++..|.+.|++...+.++|+|||+.+=
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~ 556 (591)
T PRK11269 484 RAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILE 556 (591)
T ss_pred HHhccCccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEec
Confidence 000 0 12578999999999999996 889999988888866555689999999983
No 86
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.71 E-value=4.3e-08 Score=116.29 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=82.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||++|||+|. .+. +.|..+ +|| +++||.||+ ||+..
T Consensus 407 g~mG~~lp~aiGa~la~p~---------~~vv~i~GDG~f~-~~~--~eL~ta~~~~lp------~~~vv~NN~~~~~~~ 468 (530)
T PRK07092 407 GGLGYGLPAAVGVALAQPG---------RRVIGLIGDGSAM-YSI--QALWSAAQLKLP------VTFVILNNGRYGALR 468 (530)
T ss_pred CcccchHHHHHHHHHhCCC---------CeEEEEEeCchHh-hhH--HHHHHHHHhCCC------cEEEEEeChHHHHHH
Confidence 6799999999999998642 5689999999998 442 344444 999 999999998 88632
Q ss_pred C----------CCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 D----------PMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~----------~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. ........++..+|++||+++++|+ +++++..+.+.|. +.++|+|||+.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~----~~~~p~liev~~ 529 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARAL----AADGPVLVEVEV 529 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEc
Confidence 1 1111124678999999999999998 5777766555554 578999999975
No 87
>PRK06154 hypothetical protein; Provisional
Probab=98.70 E-value=4.6e-08 Score=117.11 Aligned_cols=115 Identities=18% Similarity=0.185 Sum_probs=88.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+-...
T Consensus 431 gsmG~glpaaiGa~la~p~---------r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp------i~~vV~NN~~yg~~~~~~ 495 (565)
T PRK06154 431 TQLGYGLGLAMGAKLARPD---------ALVINLWGDAAFGMTGMDFETAVRERIP------ILTILLNNFSMGGYDKVM 495 (565)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchHHhccHHHHHHHHHhCCC------eEEEEEECCccceeehhh
Confidence 5699999999999999753 5699999999997444445555555999 888888888 6743211
Q ss_pred ------CC-CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 ------MS-GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 ------~~-~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. .....+++.+|++||+++++|+ +++++..+.+.|+++.+ .++|+|||+.+
T Consensus 496 ~~~~~~~~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v 554 (565)
T PRK06154 496 PVSTTKYRATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVIT 554 (565)
T ss_pred hhhcCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEe
Confidence 00 1113578899999999999998 78999999888886543 46799999987
No 88
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.70 E-value=3e-08 Score=118.08 Aligned_cols=115 Identities=24% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|.++|.|+|+++|... .-+||+.|||+|...+.-.+|+.--+|| +++||.||+ ||+.....
T Consensus 408 GtMG~glPaAIGAkla~P~---------r~Vv~i~GDG~F~m~~qEL~Ta~r~~lp------v~ivv~nN~~~g~v~~~q 472 (550)
T COG0028 408 GTMGFGLPAAIGAKLAAPD---------RKVVAIAGDGGFMMNGQELETAVRYGLP------VKIVVLNNGGYGMVRQWQ 472 (550)
T ss_pred ccccchHHHHHHHHhhCCC---------CcEEEEEcccHHhccHHHHHHHHHhCCC------EEEEEEECCccccchHHH
Confidence 5599999999999999873 5699999999998666666666656999 999999988 78764321
Q ss_pred CCc---------Cccc-HHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 443 SGR---------SSQY-CTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 443 ~~r---------ss~~-~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
+.. .... +..+|++||+.+++|+ +++++..+.++|+ +..+|+|||+.+=+-
T Consensus 473 ~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al----~~~~p~lidv~id~~ 533 (550)
T COG0028 473 ELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEAL----ASDGPVLIDVVVDPE 533 (550)
T ss_pred HHhcCCCcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCc
Confidence 111 1122 8899999999999999 8999998887777 468899999988543
No 89
>PRK08266 hypothetical protein; Provisional
Probab=98.69 E-value=5.6e-08 Score=115.56 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=86.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|. .+ ..|-...+ +|| +++||.||+ ||+...
T Consensus 402 GsmG~~lp~aiGa~la~p~---------~~vv~v~GDG~f~-~~-~~eL~ta~~~~lp------v~ivv~NN~~y~~~~~ 464 (542)
T PRK08266 402 GTLGYGFPTALGAKVANPD---------RPVVSITGDGGFM-FG-VQELATAVQHNIG------VVTVVFNNNAYGNVRR 464 (542)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchhhh-cc-HHHHHHHHHhCCC------eEEEEEeCCcchHHHH
Confidence 5699999999999988642 4689999999998 44 34444334 999 888888885 886431
Q ss_pred CC------C---C-cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCC
Q 002419 441 PM------S---G-RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH 502 (925)
Q Consensus 441 ~~------~---~-rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GH 502 (925)
.+ . . ....++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.++|...+
T Consensus 465 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 465 DQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAAL----AHGGPVLIEVPVPRGSEA 530 (542)
T ss_pred HHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCcEEEEEEecCCCCc
Confidence 10 0 0 123578999999999999998 5778877766665 457899999999887543
No 90
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.68 E-value=2.9e-08 Score=119.27 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=88.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|..+|.|+|+++|.+. .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+....
T Consensus 418 gsmG~glpaaiGa~lA~pd---------r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp------vv~iV~NN~~yg~i~~~q 482 (588)
T TIGR01504 418 GPLGWTIPAALGVCAADPK---------RNVVALSGDYDFQFMIEELAVGAQHNIP------YIHVLVNNAYLGLIRQAQ 482 (588)
T ss_pred ccccchHhHHHhhhhhCCC---------CcEEEEEcchHhhccHHHHHHHHHhCCC------eEEEEEeCCchHHHHHHH
Confidence 6699999999999999753 4599999999997555555565555999 888887777 7753210
Q ss_pred ----CC-----Cc----------CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 ----MS-----GR----------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 ----~~-----~r----------ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. .. ...++..+|++||+++.+|+ +++++..+.+.|++-..+.++|+|||+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i 554 (588)
T TIGR01504 483 RAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVIL 554 (588)
T ss_pred HHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEe
Confidence 00 00 13578899999999999996 78999888888886544458999999998
No 91
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=98.67 E-value=1.1e-07 Score=105.49 Aligned_cols=120 Identities=19% Similarity=0.186 Sum_probs=87.0
Q ss_pred CcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccCC
Q 002419 365 HLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDP 441 (925)
Q Consensus 365 hlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~~ 441 (925)
.+|..+|+|+|+++|... .-+|++.|||++.+-| ..|-...+ ++| +++||.||+ ||.+...
T Consensus 71 ~mG~alpaAiGaklA~pd---------~~VV~i~GDG~~~~mg-~~eL~tA~r~nl~------i~vIV~NN~~YG~t~gQ 134 (301)
T PRK05778 71 LHGRAIAFATGAKLANPD---------LEVIVVGGDGDLASIG-GGHFIHAGRRNID------ITVIVENNGIYGLTKGQ 134 (301)
T ss_pred hhccHHHHHHHHHHHCCC---------CcEEEEeCccHHHhcc-HHHHHHHHHHCCC------cEEEEEeCchhhcccCc
Confidence 469999999999999753 4689999999963123 34444445 999 899999998 5776421
Q ss_pred CC----------------CcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE--EeecCCC
Q 002419 442 MS----------------GRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV--CYRRFGH 502 (925)
Q Consensus 442 ~~----------------~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~--tYR~~GH 502 (925)
.. .....++..+|+++|++.+ ++...+++++..+.+.|++ .++|+|||+. |--.+|.
T Consensus 135 ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~ 210 (301)
T PRK05778 135 ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGR 210 (301)
T ss_pred ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCc
Confidence 00 0023578899999999986 4566789999988888874 5889999976 4444554
Q ss_pred CC
Q 002419 503 NE 504 (925)
Q Consensus 503 ne 504 (925)
+.
T Consensus 211 ~~ 212 (301)
T PRK05778 211 NT 212 (301)
T ss_pred CC
Confidence 43
No 92
>PRK12474 hypothetical protein; Provisional
Probab=98.66 E-value=7.9e-08 Score=113.80 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=84.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|..+|.|+|+++|.+. .-+||+.|||+|...+.-.+|+---+|| +++||.||+ ||+....
T Consensus 389 gsmG~glpaAiGa~lA~p~---------r~vv~i~GDG~f~m~~qEL~Ta~r~~lp------v~iiV~NN~~y~~i~~~~ 453 (518)
T PRK12474 389 GSIGQGLPLAAGAAVAAPD---------RKVVCPQGDGGAAYTMQALWTMARENLD------VTVVIFANRSYAILNGEL 453 (518)
T ss_pred CccCccHHHHHHHHHHCCC---------CcEEEEEcCchhcchHHHHHHHHHHCCC------cEEEEEcCCcchHHHHHH
Confidence 7899999999999999753 4589999999997444444444444999 888888888 7763210
Q ss_pred --------CC-----C-cC--cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 --------MS-----G-RS--SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 --------~~-----~-rs--s~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. . .. ..+++.+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~----~~~~p~liev~~ 518 (518)
T PRK12474 454 QRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAM----AQRGPRLIEAMI 518 (518)
T ss_pred HhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 00 0 01 2478899999999999998 6788888777776 358899999964
No 93
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.65 E-value=5.3e-08 Score=117.01 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=86.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeC-Cccccc-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNN-QVAFTT- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NN-q~g~tT- 439 (925)
+.+|..+|.|+|++.|... ..+|++.|||+|.- ...|-.+.+ +|| +++||.|| .||+..
T Consensus 435 g~mG~glp~aiGa~la~p~---------r~vv~i~GDG~f~~--~~~el~Ta~~~~lp------v~ivV~NN~~y~~~~~ 497 (588)
T PRK07525 435 GNCGYAFPAIIGAKIACPD---------RPVVGFAGDGAWGI--SMNEVMTAVRHNWP------VTAVVFRNYQWGAEKK 497 (588)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcCchHhc--cHHHHHHHHHhCCC------eEEEEEeCchhHHHHH
Confidence 6699999999999998653 46999999999973 356666655 999 88888777 477531
Q ss_pred --------CCCC--CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 440 --------DPMS--GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 440 --------~~~~--~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.... .....++..+|++||+++++|+ +++++..+.+.|++.. +.++|+|||+.+=
T Consensus 498 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~ 562 (588)
T PRK07525 498 NQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCN 562 (588)
T ss_pred HHHHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEec
Confidence 0000 0113588999999999999996 7899999888888653 2368999999984
No 94
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=98.65 E-value=6.8e-08 Score=115.84 Aligned_cols=114 Identities=22% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.||..+|.|+|++.|... ..+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+..
T Consensus 408 gsmG~glpaAiGa~la~p~---------r~Vv~i~GDGsf~m~~~eL~Tavr~~lp------i~~VV~NN~~yg~i~~~~ 472 (575)
T TIGR02720 408 ATMGVGVPGAIAAKLNYPD---------RQVFNLAGDGAFSMTMQDLLTQVQYHLP------VINIVFSNCTYGFIKDEQ 472 (575)
T ss_pred chhhchHHHHHHHHHhCCC---------CcEEEEEcccHHHhhHHHHHHHHHhCCC------eEEEEEeCCccHHHHHHH
Confidence 5699999999999998653 5689999999997444334444444999 887777776 88531
Q ss_pred ---CC-CC--CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 ---DP-MS--GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ---~~-~~--~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. .. .....+++.+|++||+++++|+ +++++..+.++|++ . +.++|+|||+.+
T Consensus 473 ~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i 531 (575)
T TIGR02720 473 EDTNQPLIGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKI 531 (575)
T ss_pred HHhCCCcccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEe
Confidence 10 00 1124678999999999999995 67888888888875 2 457899999988
No 95
>PRK07064 hypothetical protein; Provisional
Probab=98.63 E-value=9.8e-08 Score=113.47 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=85.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|.+. .-+|++.|||+|.-.+.-.+|..--+|| +++||.||+ ||+-..
T Consensus 405 g~mG~~lpaAiGa~lA~p~---------~~vv~i~GDGsf~m~~~eL~Ta~~~~lp------v~ivV~NN~~yg~~~~~~ 469 (544)
T PRK07064 405 GGIGQGLAMAIGAALAGPG---------RKTVGLVGDGGLMLNLGELATAVQENAN------MVIVLMNDGGYGVIRNIQ 469 (544)
T ss_pred CccccccchhhhhhhhCcC---------CcEEEEEcchHhhhhHHHHHHHHHhCCC------eEEEEEeCChhHHHHHHH
Confidence 6799999999999999643 4699999999997444444444444999 777777776 775321
Q ss_pred -------CC-CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 -------PM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 -------~~-~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.. ......++..+|++||++..+|+ +++++..+.+.|++ .++|+|||+.++
T Consensus 470 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 470 DAQYGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred HHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 00 01124678899999999999996 68888888877764 578999999985
No 96
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.63 E-value=9.2e-08 Score=114.71 Aligned_cols=116 Identities=20% Similarity=0.184 Sum_probs=88.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|...+.-.+|+.--+|| +|+||.||+ ||+...
T Consensus 430 g~mG~~lpaaiGa~la~p~---------~~Vv~i~GDG~f~m~~~eL~Tavr~~lp------vi~vV~NN~~yg~i~~~~ 494 (579)
T TIGR03457 430 GNCGYAFPTIIGAKIAAPD---------RPVVAYAGDGAWGMSMNEIMTAVRHDIP------VTAVVFRNRQWGAEKKNQ 494 (579)
T ss_pred ccccchHHHHHhhhhhCCC---------CcEEEEEcchHHhccHHHHHHHHHhCCC------eEEEEEECcchHHHHHHH
Confidence 5699999999999999642 4589999999998555555555555999 777777776 775320
Q ss_pred -----C--CC-CcCc-ccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 -----P--MS-GRSS-QYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 -----~--~~-~rss-~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
. .. .... .++..+|++||+++++|+ +++++..+.+.|++.. +.++|+|||+.+=
T Consensus 495 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~ 557 (579)
T TIGR03457 495 VDFYNNRFVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCT 557 (579)
T ss_pred HHhhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeC
Confidence 0 00 0112 478999999999999986 8899999999888643 3478999999983
No 97
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=98.62 E-value=1.7e-07 Score=106.33 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=81.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|...|.|+|+++|.+. .-+||+.|||+|.......+++...++++ +++||.||+ |+.+....
T Consensus 221 GsMG~a~p~AlG~ala~p~---------r~Vv~i~GDGsflm~~~eL~t~~~~~~~n-----li~VVlNNg~~~~~g~q~ 286 (361)
T TIGR03297 221 GSMGHASQIALGLALARPD---------QRVVCLDGDGAALMHMGGLATIGTQGPAN-----LIHVLFNNGAHDSVGGQP 286 (361)
T ss_pred chhhhHHHHHHHHHHHCCC---------CCEEEEEChHHHHHHHHHHHHHHHhCCCC-----eEEEEEcCccccccCCcC
Confidence 5699999999999999753 45999999999953332333333336532 899999998 45433211
Q ss_pred CCcCcccHHHHHhhcCcc-EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 443 SGRSSQYCTDVAKALDAP-IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 443 ~~rss~~~~d~Aka~giP-~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
......++..+|+++|+. +++| ++++++..+.+.|. +.++|+|||+.+-.
T Consensus 287 ~~~~~~d~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~----~~~gp~lIeV~v~~ 337 (361)
T TIGR03297 287 TVSQHLDFAQIAKACGYAKVYEV--STLEELETALTAAS----SANGPRLIEVKVRP 337 (361)
T ss_pred CCCCCCCHHHHHHHCCCceEEEe--CCHHHHHHHHHHHH----hCCCcEEEEEEecC
Confidence 111246889999999974 6665 58899988888775 35789999999843
No 98
>PRK07586 hypothetical protein; Validated
Probab=98.61 E-value=1.1e-07 Score=112.33 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=82.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|.-.+.-.+|+---+|| +++||.||+ ||+-..
T Consensus 385 g~mG~~lpaaiGa~lA~p~---------r~Vv~i~GDGsf~m~~~EL~Ta~~~~lp------v~ivV~NN~~y~~~~~~~ 449 (514)
T PRK07586 385 GAIGQGLPLATGAAVACPD---------RKVLALQGDGSAMYTIQALWTQARENLD------VTTVIFANRAYAILRGEL 449 (514)
T ss_pred cccccHHHHHHHHHHhCCC---------CeEEEEEechHHHhHHHHHHHHHHcCCC------CEEEEEeCchhHHHHHHH
Confidence 6799999999999999753 5699999999997444444444333999 777777776 775310
Q ss_pred -------C-C------CCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 -------P-M------SGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 -------~-~------~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
+ . +.. ...++..+|++||++.++|+ +++++..+.+.|+ +.++|+|||+.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~----~~~~p~liev~~ 514 (514)
T PRK07586 450 ARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAAL----AEPGPHLIEAVV 514 (514)
T ss_pred HHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHH----cCCCCEEEEEEC
Confidence 0 0 011 13578999999999999996 6888888777776 357899999963
No 99
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.61 E-value=1.6e-07 Score=112.22 Aligned_cols=113 Identities=21% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|..+|.|+|+++|... ..+||+.|||+|.-.+.-.++...-+|| +++||.||+ |++....
T Consensus 415 g~mG~glpaaiGa~la~p~---------~~vv~i~GDGsf~~~~~el~ta~~~~l~------i~~vv~nN~~~~~~~~~~ 479 (557)
T PRK08199 415 GSMGYGLPAAIAAKLLFPE---------RTVVAFAGDGCFLMNGQELATAVQYGLP------IIVIVVNNGMYGTIRMHQ 479 (557)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHhhccHHHHHHHHHhCCC------eEEEEEeCCcchHHHHHH
Confidence 6699999999999998643 5699999999997444444443333999 999999998 6753210
Q ss_pred -----C----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 442 -----M----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 442 -----~----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
. ......+++++|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+=
T Consensus 480 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~li~v~~~ 538 (557)
T PRK08199 480 EREYPGRVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERAL----ASGKPALIEIRID 538 (557)
T ss_pred HHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeC
Confidence 0 00123578999999999999998 6788777666665 4688999999983
No 100
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.60 E-value=1.5e-07 Score=112.89 Aligned_cols=113 Identities=20% Similarity=0.229 Sum_probs=83.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|.+. .-+||+.|||+|.....-.+|+---+|| +++||.||+ ||+...
T Consensus 408 G~mG~~lpaAiGa~la~p~---------r~vv~i~GDGsf~m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i~~~~ 472 (574)
T PRK09124 408 GSMANAMPQALGAQAAHPG---------RQVVALSGDGGFSMLMGDFLSLVQLKLP------VKIVVFNNSVLGFVAMEM 472 (574)
T ss_pred ccccchHHHHHHHHHhCCC---------CeEEEEecCcHHhccHHHHHHHHHhCCC------eEEEEEeCCccccHHHHH
Confidence 5689999999999998753 4589999999996333333443333999 777777776 776410
Q ss_pred ----C-CCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 ----P-MSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 ----~-~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
. ... ....+++.+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~ 530 (574)
T PRK09124 473 KAGGYLTDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTA 530 (574)
T ss_pred HhcCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0 001 123578999999999999997 78888887777763 578999999873
No 101
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.60 E-value=1.1e-07 Score=114.41 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=87.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|..+|.|+|+++|.+. .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ |++-.
T Consensus 430 gsmG~glpaaiGa~lA~p~---------r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp------vi~vV~NN~~y~~i~~~q 494 (595)
T PRK09107 430 GTMGYGLPAALGVQIAHPD---------ALVIDIAGDASIQMCIQEMSTAVQYNLP------VKIFILNNQYMGMVRQWQ 494 (595)
T ss_pred hhhhhhHHHHHHHHHhCCC---------CeEEEEEcCchhhccHHHHHHHHHhCCC------eEEEEEeCCccHHHHHHH
Confidence 6799999999999999753 5699999999997555555555555999 888888888 66521
Q ss_pred ------CCCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 ------DPMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ------~~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
..... ...++++.+|++||+++++|+ +++++..+.+.|.+ .++|+|||+.+-+
T Consensus 495 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 495 QLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred HHHhCCccccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 00111 123678999999999999995 78888887777764 4789999999854
No 102
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.60 E-value=1.3e-07 Score=103.61 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=85.3
Q ss_pred cccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcch-HHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc--
Q 002419 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV-VYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT-- 439 (925)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~-v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT-- 439 (925)
+|..+|.|+|+++|... .-+|++.|||++. .. +.|-...+ ++| +++||.||+ ||++.
T Consensus 62 mG~alp~AiGaklA~pd---------~~VVai~GDG~~~--~iG~~eL~tA~r~nl~------i~~IV~NN~~Yg~t~~Q 124 (280)
T PRK11869 62 HGRAIPAATAVKATNPE---------LTVIAEGGDGDMY--AEGGNHLIHAIRRNPD------ITVLVHNNQVYGLTKGQ 124 (280)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEECchHHh--hCcHHHHHHHHHhCcC------cEEEEEECHHHhhhcce
Confidence 79999999999998543 4689999999975 44 66777777 999 999999998 57652
Q ss_pred -----CC---------CCCcCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 -----DP---------MSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 -----~~---------~~~rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
+. .......++..+|+++|++.+.. +-.+++++.++.++|++ .++|+|||+.+
T Consensus 125 ~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 125 ASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred ecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 10 00011247888999999998874 46799999998888884 58999999974
No 103
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.58 E-value=8.2e-07 Score=98.21 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=92.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-ccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT~ 440 (925)
|..|...++|.|+++|.+..+.+ ..+|++.|||++.--| +....+.+ +.+ ++|||.||+. +.|.-
T Consensus 69 ~~fg~~~a~a~Gi~~a~~~~~~~-----~~Vv~~~GDG~~~dIG-~~~L~~a~~r~~n------i~~ivlDNe~Y~nTGg 136 (299)
T PRK11865 69 VAFENAAAVASGIERAVKALGKK-----VNVVAIGGDGGTADIG-FQSLSGAMERGHN------ILYLMYDNEAYMNTGI 136 (299)
T ss_pred hhhcchHHHHHHHHHHHHHhcCC-----CeEEEEeCCchHhhcc-HHHHHHHHHcCCC------eEEEEECCccccCCCC
Confidence 66899999999999998765432 5799999999987344 33333333 888 9999999995 54421
Q ss_pred C-CC--------------------CcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE--E
Q 002419 441 P-MS--------------------GRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV--C 496 (925)
Q Consensus 441 ~-~~--------------------~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~--t 496 (925)
. +. .....++..+|.++|++.+ .++-.|+.++.+++++|.+ .+||.||++. |
T Consensus 137 Q~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC 212 (299)
T PRK11865 137 QRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPC 212 (299)
T ss_pred CCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 0 00 1113567889999999988 5688899999999998885 5899999998 4
Q ss_pred eecCCCC
Q 002419 497 YRRFGHN 503 (925)
Q Consensus 497 YR~~GHn 503 (925)
-..+||.
T Consensus 213 ~~~~~~~ 219 (299)
T PRK11865 213 PTGWGFP 219 (299)
T ss_pred CCCCCCC
Confidence 5556554
No 104
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.57 E-value=1.9e-07 Score=111.92 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=82.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|.++|.|+|+++|.+. .-+|++.|||+|. -.++|-...+ +|| +++||.||+ ||+-..
T Consensus 424 g~mG~glpaAiGaala~p~---------~~vv~i~GDGsf~--m~~~eL~ta~r~~lp------i~ivV~NN~~~~~i~~ 486 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAKPD---------ETVVAIVGDGGFQ--MTLQELSVIKELSLP------VKVVILNNEALGMVRQ 486 (571)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchHHh--hhHHHHHHHHHhCCC------eEEEEEECchHHHHHH
Confidence 6799999999999999642 4689999999996 4555522222 999 888888877 664211
Q ss_pred ---------C--CCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 ---------P--MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ---------~--~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. .......++..+|++||+++++|+ +++++..+.+.|. +.++|+|||+.+-+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~lieV~vd~ 549 (571)
T PRK07710 487 WQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAI----ELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 0 011123678999999999999997 4677766655554 46899999999854
No 105
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.57 E-value=2e-07 Score=111.41 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=84.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|.++|.|+|+++|... ..+|++.|||+|. -.++|-...+ +|| +|+||.||+ ||+...
T Consensus 419 g~mG~~lpaaiGa~la~~~---------~~vv~i~GDGsf~--~~~~eL~ta~~~~lp------vi~vV~NN~~~g~~~~ 481 (564)
T PRK08155 419 GTMGFGLPAAIGAALANPE---------RKVLCFSGDGSLM--MNIQEMATAAENQLD------VKIILMNNEALGLVHQ 481 (564)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEccchhh--ccHHHHHHHHHhCCC------eEEEEEeCCcccccHH
Confidence 5699999999999999642 4689999999997 3466655444 999 999999998 776431
Q ss_pred C------C-----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 P------M-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~------~-----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. . ......++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 482 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~ 542 (564)
T PRK08155 482 QQSLFYGQRVFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRI 542 (564)
T ss_pred HHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 0 0 00123578899999999999988 67888777666653 57899999998
No 106
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.57 E-value=1.8e-07 Score=112.28 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=81.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|.+. ..+||+.|||+|. -...|-...+ +|| +++||.||+ ||+...
T Consensus 437 gsmG~~l~~aiGa~la~~~---------~~vv~i~GDGsf~--~~~~el~ta~~~~l~------~~~vv~NN~~~g~~~~ 499 (578)
T PRK06112 437 AGLGWGVPMAIGAKVARPG---------APVICLVGDGGFA--HVWAELETARRMGVP------VTIVVLNNGILGFQKH 499 (578)
T ss_pred cccccHHHHHHHHHhhCCC---------CcEEEEEcchHHH--hHHHHHHHHHHhCCC------eEEEEEeCCccCCEEe
Confidence 5689999999999998642 5699999999995 2334433333 999 999999998 354321
Q ss_pred CCC----------CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PMS----------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~~----------~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.+. .....++..+|++||+++++|+ +++++..+.+.|. +.++|+|||+++
T Consensus 500 ~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~lIev~~ 559 (578)
T PRK06112 500 AETVKFGTHTDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAM----AAPGPTLIEVIT 559 (578)
T ss_pred ccccccCCccccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEc
Confidence 110 0123568899999999999997 5778777666665 468999999998
No 107
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.57 E-value=2.2e-07 Score=111.26 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=83.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT- 439 (925)
+.+|..+|.|+|+++|... ..+|++.|||+|. .. +.|-...+ +|| +++||.||+ |++..
T Consensus 421 g~mG~~lp~aiGa~la~p~---------~~vv~i~GDG~f~-~~-~~eL~ta~~~~lp------v~~vV~NN~~~~~i~~ 483 (574)
T PRK06882 421 GTMGFGLPAAIGVKFAHPE---------ATVVCVTGDGSIQ-MN-IQELSTAKQYDIP------VVIVSLNNRFLGMVKQ 483 (574)
T ss_pred ccccchhHHHHHHHhhcCC---------CcEEEEEcchhhh-cc-HHHHHHHHHhCCC------eEEEEEECchhHHHHH
Confidence 5699999999999999642 4589999999997 32 44444443 999 999999998 44311
Q ss_pred --------CCCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 --------DPMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 --------~~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
+.... ....++..+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+=+
T Consensus 484 ~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 484 WQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred HHHHhcCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 10111 123578999999999999997 678888877777653 3689999999844
No 108
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.57 E-value=2.2e-07 Score=111.75 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=85.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|.++|.|+|+++|.+. .-+|++.|||+|...+.-.+|+.--+|| +++||.||+ |++-.
T Consensus 430 g~mG~glpaaiGaala~p~---------~~vv~i~GDG~f~m~~~eL~Ta~~~~l~------~~~vV~NN~~y~~i~~~q 494 (585)
T CHL00099 430 GTMGYGLPAAIGAQIAHPN---------ELVICISGDASFQMNLQELGTIAQYNLP------IKIIIINNKWQGMVRQWQ 494 (585)
T ss_pred cchhhhHHHHHHHHHhCCC---------CeEEEEEcchhhhhhHHHHHHHHHhCCC------eEEEEEECCcchHHHHHH
Confidence 6699999999999999753 4699999999997555555555555999 999999998 44311
Q ss_pred ------C-CCC--CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 ------D-PMS--GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ------~-~~~--~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. ... .....++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v 554 (585)
T CHL00099 495 QAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQV 554 (585)
T ss_pred HHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 0 000 0113578999999999999997 67888877776664 57899999998
No 109
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=98.56 E-value=2.4e-07 Score=110.48 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... + .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+-..
T Consensus 396 g~mG~glpaaiGa~la~p~---~-----~~Vv~i~GDGsf~~~~~eL~Ta~~~~lp------i~ivV~NN~~~g~i~~~q 461 (549)
T PRK06457 396 GSMGIGVPGSVGASFAVEN---K-----RQVISFVGDGGFTMTMMELITAKKYDLP------VKIIIYNNSKLGMIKFEQ 461 (549)
T ss_pred chhhhhHHHHHHHHhcCCC---C-----CeEEEEEcccHHhhhHHHHHHHHHHCCC------eEEEEEECCccchHHHHH
Confidence 6699999999999998640 1 4589999999997444444443333999 888777777 664310
Q ss_pred -----CC--CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 -----PM--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 -----~~--~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.. .....+++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+-
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~ 519 (549)
T PRK06457 462 EVMGYPEWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVD 519 (549)
T ss_pred HHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 01 01123578999999999999997 78888887777763 578999999984
No 110
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.56 E-value=2.1e-07 Score=111.62 Aligned_cols=116 Identities=18% Similarity=0.140 Sum_probs=89.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|.++|.|+|+++|... .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+-.
T Consensus 421 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f~m~~~eL~Ta~r~~l~------v~ivV~NN~~yg~i~~~q 485 (574)
T PRK07979 421 GTMGFGLPAALGVKMALPE---------ETVVCVTGDGSIQMNIQELSTALQYELP------VLVLNLNNRYLGMVKQWQ 485 (574)
T ss_pred cchhhHHHHHHHHHHhCCC---------CeEEEEEcchhhhccHHHHHHHHHhCCC------eEEEEEeCchhhHHHHHH
Confidence 6699999999999999753 4589999999997666566666666999 888888887 56421
Q ss_pred ------CCCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 440 ------DPMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 440 ------~~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
..... ...+++..+|++||+++++|+ +++++..+.+.|++..+ .++|+|||+.+=
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~ 548 (574)
T PRK07979 486 DMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVD 548 (574)
T ss_pred HHhcCCccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEEC
Confidence 11111 123678999999999999996 78999888888886533 368999999983
No 111
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.56 E-value=2.4e-07 Score=110.15 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=83.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|.+. .-+|++.|||+|...+.-.+|+.--+|| +++||.||+ |++-..
T Consensus 408 g~mG~~lpaaiGa~la~~~---------~~vv~i~GDGsf~m~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~~~ 472 (539)
T TIGR02418 408 QTLGVALPWAIGAALVRPN---------TKVVSVSGDGGFLFSSMELETAVRLKLN------IVHIIWNDNGYNMVEFQE 472 (539)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEcchhhhchHHHHHHHHHhCCC------eEEEEEECCcchHHHHHH
Confidence 5799999999999999753 4599999999996443333443333999 788777776 664310
Q ss_pred ---CCC----CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 ---PMS----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ---~~~----~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
... .....++..+|++||++.++|+ +++++..+.+.|++ .++|+|||+.+-+
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 531 (539)
T TIGR02418 473 EMKYQRSSGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDY 531 (539)
T ss_pred HHhcCCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 000 1124678999999999999998 67888887777753 5789999999843
No 112
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.55 E-value=1.3e-07 Score=114.43 Aligned_cols=115 Identities=15% Similarity=0.125 Sum_probs=85.4
Q ss_pred ccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+-+.+|.++|.|+|+++|... .-+|++.|||+|...+.-.+|+.--+|| +++||.||+ ||+...
T Consensus 432 ~~g~mG~glpaAiGA~lA~p~---------r~Vv~i~GDG~f~m~~~eL~Ta~r~~lp------vi~vV~NN~~~g~i~~ 496 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVALPD---------EEVICIAGDASFLMNIQELGTLAQYGIN------VKTVIINNGWQGMVRQ 496 (616)
T ss_pred CccccccHHHHHHHHHHhCCC---------CcEEEEEcchHhhhhHHHHHHHHHhCCC------eEEEEEECCcchHHHH
Confidence 336699999999999998643 4589999999997444334444444999 888888887 565321
Q ss_pred C------C-C-C----cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 P------M-S-G----RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 ~------~-~-~----rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
. . . . ....+++.+|+++|+++++|+ +++++..+.+.|++ .++|+|||+.+.
T Consensus 497 ~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~ 559 (616)
T PRK07418 497 WQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVR 559 (616)
T ss_pred HHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 0 0 0 0 023678899999999999997 78998887777764 578999999984
No 113
>PRK05858 hypothetical protein; Provisional
Probab=98.55 E-value=1.5e-07 Score=112.07 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|. -.++|-...+ +|| +++||.||+ ||+.-.
T Consensus 407 gsmG~~lp~aiGa~la~p~---------r~vv~i~GDG~f~--~~~~eL~Ta~~~~lp------i~ivV~NN~~y~~~~~ 469 (542)
T PRK05858 407 GCLGTGPGYALAARLARPS---------RQVVLLQGDGAFG--FSLMDVDTLVRHNLP------VVSVIGNNGIWGLEKH 469 (542)
T ss_pred cccccchhHHHHHHHhCCC---------CcEEEEEcCchhc--CcHHHHHHHHHcCCC------EEEEEEeCCchhhHHH
Confidence 4599999999999998643 4699999999996 3455555555 999 888888886 665321
Q ss_pred ---------CC-CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 ---------PM-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ---------~~-~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. +.....++..+|++||+++.+|+ +++++..+.++|++ .++|+|||+.+
T Consensus 470 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~ 529 (542)
T PRK05858 470 PMEALYGYDVAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLT 529 (542)
T ss_pred HHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEE
Confidence 00 01134678899999999999998 67888888888774 57899999998
No 114
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.55 E-value=1.8e-07 Score=112.19 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=85.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+-..
T Consensus 423 gsmG~glpaAiGa~la~p~---------r~Vv~i~GDG~f~m~~~eL~Ta~r~~lp------v~ivV~NN~~y~~i~~~q 487 (574)
T PRK06466 423 GTMGFGLPAAMGVKLAFPD---------QDVACVTGEGSIQMNIQELSTCLQYGLP------VKIINLNNGALGMVRQWQ 487 (574)
T ss_pred chhhchHHHHHHHHHhCCC---------CeEEEEEcchhhhccHHHHHHHHHhCCC------eEEEEEeCCccHHHHHHH
Confidence 5689999999999999753 4589999999997555555555555999 888888887 664210
Q ss_pred -------CCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 -------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 -------~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.... ....++..+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+=
T Consensus 488 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~ 548 (574)
T PRK06466 488 DMQYEGRHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVD 548 (574)
T ss_pred HHhcCCceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeC
Confidence 0100 123578899999999999996 788888888777742 278999999984
No 115
>PLN02573 pyruvate decarboxylase
Probab=98.55 E-value=1.5e-07 Score=112.94 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=85.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|...+.-.+|+---+|| +++||.||+ ||+.....
T Consensus 428 gsmG~glpaaiGa~lA~p~---------r~vv~i~GDG~f~m~~~EL~Ta~r~~lp------vv~vV~NN~~yg~~~~~~ 492 (578)
T PLN02573 428 GSIGWSVGATLGYAQAAPD---------KRVIACIGDGSFQVTAQDVSTMIRCGQK------SIIFLINNGGYTIEVEIH 492 (578)
T ss_pred hhhhhhhhHHHHHHHhCCC---------CceEEEEeccHHHhHHHHHHHHHHcCCC------CEEEEEeCCceeEEEeec
Confidence 6799999999999999753 4699999999997555555555555999 788887777 67543111
Q ss_pred ----CCcCcccHHHHHhhcC-----ccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 443 ----SGRSSQYCTDVAKALD-----APIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 443 ----~~rss~~~~d~Aka~g-----iP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
......+++.+|++|| +++++|+ +++++..+.+.|++. ..++|+|||+.+
T Consensus 493 ~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 493 DGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred ccCccccCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 1112367899999985 9999998 678888888887642 247899999987
No 116
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.54 E-value=1.9e-07 Score=111.39 Aligned_cols=112 Identities=21% Similarity=0.220 Sum_probs=83.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-cccc-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTT- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT- 439 (925)
+.+|..+|.|+|+++|... ..+|++.|||+|.- .+.|-...+ +|| +++||.||+. ++..
T Consensus 412 g~mG~~l~aaiGa~la~~~---------~~vv~~~GDG~f~~--~~~eL~ta~~~~l~------~~~vv~NN~~~~~~~~ 474 (558)
T TIGR00118 412 GTMGFGLPAAIGAKVAKPE---------STVICITGDGSFQM--NLQELSTAVQYDIP------VKILILNNRYLGMVRQ 474 (558)
T ss_pred ccccchhhHHHhhhhhCCC---------CcEEEEEcchHHhc--cHHHHHHHHHhCCC------eEEEEEeCCchHHHHH
Confidence 4589999999999998642 46899999999973 344444444 999 9999999984 4322
Q ss_pred ------CC---C-CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 ------DP---M-SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ------~~---~-~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
.. . ......++..+|++||++.++|+. ++++..+.+.|++ .++|+|||+.+-+
T Consensus 475 ~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 475 WQELFYEERYSHTHMGSLPDFVKLAEAYGIKGIRIEK--PEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred HHHHhcCCceeeccCCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 00 0 111236789999999999999984 7888888877764 4789999999953
No 117
>PRK08322 acetolactate synthase; Reviewed
Probab=98.53 E-value=2.7e-07 Score=109.81 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=83.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|++.|... .-+|++.|||+|...+.-.+|+.--++| +++||.||+ ||+...
T Consensus 406 g~mG~~lpaaiGa~la~p~---------~~vv~i~GDGsf~m~~~eL~Ta~~~~lp------v~iiV~NN~~~g~~~~~~ 470 (547)
T PRK08322 406 ATMGAGLPSAIAAKLVHPD---------RKVLAVCGDGGFMMNSQELETAVRLGLP------LVVLILNDNAYGMIRWKQ 470 (547)
T ss_pred ccccchhHHHHHHHHhCCC---------CcEEEEEcchhHhccHHHHHHHHHhCCC------eEEEEEeCCCcchHHHHH
Confidence 4599999999999998643 4599999999997444444444444999 777777766 675321
Q ss_pred ----CCC---CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 ----PMS---GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 ----~~~---~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
... ....++++.+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+-
T Consensus 471 ~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~ 528 (547)
T PRK08322 471 ENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVD 528 (547)
T ss_pred HhhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 000 1124678999999999999996 78898888877764 478999999973
No 118
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=98.52 E-value=2.4e-07 Score=110.91 Aligned_cols=114 Identities=20% Similarity=0.245 Sum_probs=87.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|..+|.|+|+++|... ..+|++.|||+|...+.-.+|+---+|| +++||.||+ ||+....
T Consensus 421 g~mG~glpaAiGa~la~p~---------~~vv~i~GDG~f~m~~~eL~Ta~~~~l~------i~ivV~NN~~yg~i~~~q 485 (572)
T PRK06456 421 GTMGFGLPAAMGAKLARPD---------KVVVDLDGDGSFLMTGTNLATAVDEHIP------VISVIFDNRTLGLVRQVQ 485 (572)
T ss_pred ccccchhHHHHHHHHhCCC---------CeEEEEEccchHhcchHHHHHHHHhCCC------eEEEEEECCchHHHHHHH
Confidence 6799999999999999753 5699999999997666555565555999 888888887 6764210
Q ss_pred -----C-----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 442 -----M-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 442 -----~-----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. +.....+++.+|++||+.+++|+ +++++..+.+.|. +.++|+|||+.+-+
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIev~v~~ 546 (572)
T PRK06456 486 DLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAI----KEDIPAVIRVPVDK 546 (572)
T ss_pred HHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCc
Confidence 0 00123678999999999999986 7888887777665 35789999999854
No 119
>PRK08617 acetolactate synthase; Reviewed
Probab=98.52 E-value=3.5e-07 Score=109.11 Aligned_cols=114 Identities=19% Similarity=0.151 Sum_probs=83.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|...+.-.+|..--+|| +++||.||+ |++-..
T Consensus 414 g~mG~~lpaaiGa~la~p~---------~~vv~i~GDGsf~m~~~eL~Ta~~~~lp------v~~vV~NN~~~~~~~~~~ 478 (552)
T PRK08617 414 QTLGVALPWAIAAALVRPG---------KKVVSVSGDGGFLFSAMELETAVRLKLN------IVHIIWNDGHYNMVEFQE 478 (552)
T ss_pred ccccccccHHHhhHhhcCC---------CcEEEEEechHHhhhHHHHHHHHHhCCC------eEEEEEECCccchHHHHH
Confidence 4589999999999998642 4689999999997444444444444999 888888887 554210
Q ss_pred ---CCC----CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 ---PMS----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ---~~~----~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
... .....++..+|++||+++++|. +++++..+.+.|+ +.++|+|||+.+-|
T Consensus 479 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~liev~~~~ 537 (552)
T PRK08617 479 EMKYGRSSGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREAL----ATDGPVVIDIPVDY 537 (552)
T ss_pred HhhcCCcccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCcEEEEEEecc
Confidence 000 0124678999999999999887 6788887777766 45789999999844
No 120
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.51 E-value=4.1e-07 Score=109.47 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=87.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|...+.-.+|+.--+|| +++||.||+ ||+..
T Consensus 437 gsmG~glpaaiGa~lA~p~---------r~Vv~i~GDGsf~m~~~eL~Ta~r~~lp------viivV~NN~~~~~i~~~q 501 (587)
T PRK06965 437 GTMGVGLPYAMGIKMAHPD---------DDVVCITGEGSIQMCIQELSTCLQYDTP------VKIISLNNRYLGMVRQWQ 501 (587)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhhhcCHHHHHHHHHcCCC------eEEEEEECCcchHHHHHH
Confidence 5699999999999999653 4699999999998666666666666999 888888888 45421
Q ss_pred ------CCCCC-c-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 ------DPMSG-R-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ------~~~~~-r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
..... . ..+++..+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+
T Consensus 502 ~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i 561 (587)
T PRK06965 502 EIEYSKRYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQT 561 (587)
T ss_pred HHhcCCCccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEe
Confidence 11111 1 23578899999999999996 788888888888762 36899999988
No 121
>PLN02470 acetolactate synthase
Probab=98.51 E-value=4e-07 Score=109.44 Aligned_cols=113 Identities=20% Similarity=0.233 Sum_probs=86.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|..+|.|+|++.|... .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+..
T Consensus 426 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~------v~ivV~NN~~yg~i~~~~ 490 (585)
T PLN02470 426 GAMGFGLPAAIGAAAANPD---------AIVVDIDGDGSFIMNIQELATIHVENLP------VKIMVLNNQHLGMVVQWE 490 (585)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEccchhhccHHHHHHHHHhCCC------eEEEEEeCCcchHHHHHH
Confidence 6699999999999999753 4589999999998566566666666999 888888886 55421
Q ss_pred ------CCCCCc---------CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 440 ------DPMSGR---------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 440 ------~~~~~r---------ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
+..... ...+++.+|++||+++++|+ +++++..|.+.|.+ .++|+|||+.+=
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~ 557 (585)
T PLN02470 491 DRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVP 557 (585)
T ss_pred HHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 000000 02578999999999999996 78898888877764 478999999983
No 122
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.50 E-value=4.7e-07 Score=108.38 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=83.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|.+. ..+||+.|||+|.-.+.-.+|+.--+|| +|+||.||+ ||+...
T Consensus 414 g~mG~~l~~aiGa~la~p~---------~~vv~i~GDG~f~m~~~eL~Ta~~~~lp------vi~vV~NN~~~~~i~~~~ 478 (563)
T PRK08527 414 GTMGYGLPAALGAKLAVPD---------KVVINFTGDGSILMNIQELMTAVEYKIP------VINIILNNNFLGMVRQWQ 478 (563)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEecCchhcccHHHHHHHHHhCCC------eEEEEEECCcchhHHHHH
Confidence 5699999999999999652 4589999999997333333333333999 888888887 454210
Q ss_pred -------C--CCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 -------P--MSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 -------~--~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. .+.....++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+.+
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 479 TFFYEERYSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred HhhcCCceeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0 011113578899999999999997 67888777766653 5789999999976
No 123
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.50 E-value=3.5e-07 Score=100.41 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCc-ccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDG-SFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDG-A~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|..+|+|+|+++|.+. .-+|++.||| ++. -| ..|-.+.+ ++| +++||.||+ ||+|.
T Consensus 59 ~~~G~alp~A~GaklA~Pd---------~~VV~i~GDG~~f~-ig-~~eL~tA~rrn~~------i~vIV~nN~~ygmtg 121 (279)
T PRK11866 59 GIHGRVLPIATGVKWANPK---------LTVIGYGGDGDGYG-IG-LGHLPHAARRNVD------ITYIVSNNQVYGLTT 121 (279)
T ss_pred cccccHHHHHHHHHHHCCC---------CcEEEEECChHHHH-cc-HHHHHHHHHHCcC------cEEEEEEChhhhhhc
Confidence 3469999999999999653 4589999999 564 33 55666666 999 899999998 57764
Q ss_pred CCCC------Cc--Cc--------ccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 DPMS------GR--SS--------QYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~~~~------~r--ss--------~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
-... .+ ++ .++.++|+++|++.+. ....|++++.++.+.|++ .+||.|||+.+
T Consensus 122 gQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 122 GQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1110 00 01 2788999999999665 466899999988888874 68999999974
No 124
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.50 E-value=5e-07 Score=108.36 Aligned_cols=114 Identities=19% Similarity=0.140 Sum_probs=86.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+...
T Consensus 421 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f~m~~~EL~Ta~r~~lp------v~~vV~NN~~y~~i~~~q 485 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAMPD---------ETVVCVTGDGSIQMNIQELSTALQYDIP------VKIINLNNRFLGMVKQWQ 485 (572)
T ss_pred ccccchhhHHHhhhhhCCC---------CeEEEEEcchHhhccHHHHHHHHHcCCC------eEEEEEeCCccHHHHHHH
Confidence 5799999999999999653 4589999999997555555566555999 888888887 665321
Q ss_pred -------CCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 441 -------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 441 -------~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.... ....++..+|++||+++++|+ +++++..+.+.|++ ..++|+|||+.+=
T Consensus 486 ~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i~ 546 (572)
T PRK08979 486 DMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALA---MKDRLVFVDINVD 546 (572)
T ss_pred HHHhCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---cCCCcEEEEEEeC
Confidence 0000 123678899999999999998 78888887777764 1378999999884
No 125
>PRK08611 pyruvate oxidase; Provisional
Probab=98.49 E-value=3.6e-07 Score=109.68 Aligned_cols=114 Identities=24% Similarity=0.214 Sum_probs=83.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|.++|.|+|+++|... .-+|++.|||+|.-.+.-.+|+.--+|| +|+||.||+ ||+..
T Consensus 408 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~------~iivV~NN~~~g~i~~~q 472 (576)
T PRK08611 408 GTMGCGLPGAIAAKIAFPD---------RQAIAICGDGGFSMVMQDFVTAVKYKLP------IVVVVLNNQQLAFIKYEQ 472 (576)
T ss_pred hhhhhhHHHHHHHHHhCCC---------CcEEEEEcccHHhhhHHHHHHHHHhCCC------eEEEEEeCCcchHHHHHH
Confidence 5599999999999998643 4589999999997544444444444999 777777776 66521
Q ss_pred --C----CCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 --D----PMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 --~----~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. ........++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.+-+
T Consensus 473 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~----~~~~p~lIeV~vd~ 531 (576)
T PRK08611 473 QAAGELEYAIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEAL----AQDKPVIIDVYVDP 531 (576)
T ss_pred HHhcCCcccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 0 0011123678999999999999996 7888888777775 45899999999854
No 126
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=98.49 E-value=3.5e-07 Score=108.96 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|...+.-.+|+.--++| +++||.||+ ||+-..
T Consensus 401 g~mG~glpaAiGa~la~p~---------~~vv~i~GDG~f~~~~~eL~ta~~~~l~------v~ivV~NN~~~~~~~~~~ 465 (548)
T PRK08978 401 GTMGFGLPAAIGAQVARPD---------DTVICVSGDGSFMMNVQELGTIKRKQLP------VKIVLLDNQRLGMVRQWQ 465 (548)
T ss_pred hhhhchHHHHHHHHHhCCC---------CcEEEEEccchhhccHHHHHHHHHhCCC------eEEEEEeCCccHHHHHHH
Confidence 5689999999999999642 4589999999997555555555555999 777777776 664310
Q ss_pred ----C-CC-Cc---CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 ----P-MS-GR---SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ----~-~~-~r---ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. .. .. ...++..+|++||+++++|+ +++++..+.+.|++ .++|.|||+.+=+
T Consensus 466 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 466 QLFFDERYSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred HHHhCCcceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 00 01 23578999999999999996 78888887777764 5789999999844
No 127
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.49 E-value=6.4e-07 Score=98.75 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=89.0
Q ss_pred CcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcc-cCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 365 HLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGS-FAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 365 hlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA-~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
.+|..+|.|+|+++|... .-+|++.|||+ +. --..|....+ ++| +++||.||+ ||++..
T Consensus 70 ~mG~alpaAiGaklA~Pd---------~~VV~i~GDG~~f~--mg~~eL~tA~r~nl~------i~vIV~NN~~yGmt~~ 132 (286)
T PRK11867 70 IHGRALAIATGLKLANPD---------LTVIVVTGDGDALA--IGGNHFIHALRRNID------ITYILFNNQIYGLTKG 132 (286)
T ss_pred hhhcHHHHHHHHHHhCCC---------CcEEEEeCccHHHh--CCHHHHHHHHHhCCC------cEEEEEeCHHHhhhcC
Confidence 479999999999999653 56999999996 54 3345555555 999 888888887 677542
Q ss_pred CCC------Cc----------CcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 441 PMS------GR----------SSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 441 ~~~------~r----------ss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
... .+ ...+...+|.++|+..+ ++...+++++..+.+.|++ .++|+|||+..
T Consensus 133 q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~------- 201 (286)
T PRK11867 133 QYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ------- 201 (286)
T ss_pred ccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC-------
Confidence 100 00 01457789999999876 4466789999888888874 57899999963
Q ss_pred CCCCCCCcCHHHHHHHH
Q 002419 504 EIDEPSFTQPKMYKIIR 520 (925)
Q Consensus 504 e~Ddp~ytqp~ey~~i~ 520 (925)
+-|.|....+++.++
T Consensus 202 --~C~~~~~~~~~~~~~ 216 (286)
T PRK11867 202 --PCPTFNNVNTFDWFK 216 (286)
T ss_pred --CCCCCCchHHHHHHH
Confidence 445554444555443
No 128
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.49 E-value=2.4e-07 Score=110.30 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|...+.-.+|+.--+|| +++||.||+ |++-....
T Consensus 404 g~mG~glpaaiGa~la~p~---------~~vv~i~GDG~f~m~~~EL~Ta~~~~lp------i~~vV~NN~~y~~i~~~~ 468 (539)
T TIGR03393 404 GSIGYTLPAAFGAQTACPN---------RRVILLIGDGSAQLTIQELGSMLRDKQH------PIILVLNNEGYTVERAIH 468 (539)
T ss_pred hhhhhHHHHHHHHHhcCCC---------CCeEEEEcCcHHHhHHHHHHHHHHcCCC------CEEEEEeCCceEEEEeec
Confidence 6799999999999998643 4589999999997454444455555999 777777776 66532100
Q ss_pred ------CCcCcccHHHHHhhcCcc----EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 443 ------SGRSSQYCTDVAKALDAP----IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 443 ------~~rss~~~~d~Aka~giP----~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
......+++.+|++||++ +++|+ +++++..+.+.|+ +.++|+|||+.+
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~----~~~~p~liev~i 526 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVA----AHERLSLIEVVL 526 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHh----ccCCeEEEEEEc
Confidence 012236788999999996 78886 6788887777765 468899999987
No 129
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=98.45 E-value=7.2e-07 Score=107.58 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=84.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcc-hHHHHHHhc-----CCCCCCcccEEEEEEeCC-cc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQG-VVYETLHLS-----ALPNYSIGGTIHIVVNNQ-VA 436 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG-~v~EalnlA-----~LP~y~~GGvI~vV~NNq-~g 436 (925)
+.+|..+|.|+|+++|.+. .-+||+.|||+|...+ .-.+|+.-- +|| +++||.||+ ||
T Consensus 415 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lp------viivV~NN~~~~ 479 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAHPD---------RPVIALVGDGAMQMNGMAELITVAKYWRQWSDPR------LIVLVLNNRDLN 479 (597)
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhHhccchHHHHHHHHHhhcccCCC------EEEEEEeCCcch
Confidence 5799999999999999753 4589999999997443 344555444 699 999999997 65
Q ss_pred ccc---------CCC--C-CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 437 FTT---------DPM--S-GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 437 ~tT---------~~~--~-~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
+-. +.. . .....+++.+|++||++.++|. +++++..+.+.|++ .++|+|||+.+-
T Consensus 480 ~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 546 (597)
T PRK08273 480 QVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTD 546 (597)
T ss_pred HHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeC
Confidence 421 100 0 0123568999999999999998 67888887777764 588999999984
No 130
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=98.44 E-value=6.2e-07 Score=108.39 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=86.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+-.
T Consensus 447 G~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~m~~~eL~Ta~~~~lp------v~ivV~NN~~~g~i~~~q 511 (612)
T PRK07789 447 GTMGYAVPAAMGAKVGRPD---------KEVWAIDGDGCFQMTNQELATCAIEGIP------IKVALINNGNLGMVRQWQ 511 (612)
T ss_pred ccccchhhhHHhhhccCCC---------CcEEEEEcchhhhccHHHHHHHHHcCCC------eEEEEEECCchHHHHHHH
Confidence 5699999999999999643 4588999999997555555666666999 777777776 77531
Q ss_pred ------CCC--C-C---cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 440 ------DPM--S-G---RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 440 ------~~~--~-~---rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
... . . ....++..+|++||+++++|+ +++++..+.+.|++. .++|+|||+.+=
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 576 (612)
T PRK07789 512 TLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVG 576 (612)
T ss_pred HHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEEC
Confidence 000 0 0 012578999999999999996 788998888888753 268999999983
No 131
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=98.39 E-value=6.2e-07 Score=98.78 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=77.1
Q ss_pred cccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+|..+|+|+|+++|... .-+|++.|||++.+-| ..|.+..+ ++| +++||.||+ ||++.-..
T Consensus 55 mG~alPaAiGaklA~Pd---------~~VVai~GDG~f~~mg-~~eL~tA~r~nl~------I~vIVlNN~~yGmt~gQ~ 118 (287)
T TIGR02177 55 HGRALPVATGIKLANPH---------LKVIVVGGDGDLYGIG-GNHFVAAGRRNVD------ITVIVHDNQVYGLTKGQA 118 (287)
T ss_pred cccHHHHHHHHHHHCCC---------CcEEEEeCchHHHhcc-HHHHHHHHHhCcC------eEEEEEECHHHHhhhccc
Confidence 59999999999999753 5689999999974222 44555555 999 999999998 58765211
Q ss_pred C--------CcC----------cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 443 S--------GRS----------SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 443 ~--------~rs----------s~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. ... .+....+|.++++.... ...+++++.++.+.|++ .++|+|||+.+
T Consensus 119 sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 119 SPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 1 000 11233456666655544 33689999998888874 58899999974
No 132
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=98.39 E-value=1.3e-06 Score=105.16 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=84.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccC--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTD-- 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~-- 440 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ ||+...
T Consensus 419 gsmG~~lpaaiGa~la~p~---------~~Vv~i~GDGsf~m~~~eL~Ta~~~~lp------v~~vV~NN~~~g~~~~~~ 483 (586)
T PRK06276 419 GTMGFGFPAAIGAKVAKPD---------ANVIAITGDGGFLMNSQELATIAEYDIP------VVICIFDNRTLGMVYQWQ 483 (586)
T ss_pred cccccchhHHHhhhhhcCC---------CcEEEEEcchHhhccHHHHHHHHHhCCC------eEEEEEeCCchHHHHHHH
Confidence 4689999999999998642 3589999999997555445555555999 888888887 665320
Q ss_pred -------CCCC--cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 -------PMSG--RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 -------~~~~--rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.... ....++..+|+++|+.++.|+ +++++..+.++|++ .++|+|||+.+
T Consensus 484 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i 542 (586)
T PRK06276 484 NLYYGKRQSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIII 542 (586)
T ss_pred HHHhCCCcccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEe
Confidence 1111 123578899999999999986 78998888777763 57899999998
No 133
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.38 E-value=1.6e-06 Score=103.70 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=82.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccc----
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFT---- 438 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~t---- 438 (925)
+.+|..+|.|+|+++|. + .-+|++.|||+|...+.-.+|+---+|| +++||.||+ |-..
T Consensus 417 gsmG~~lpaaiGaala~-----~-----~~vv~i~GDGsf~m~~~EL~Ta~r~~l~------v~~vV~NN~~~~~~~~~~ 480 (554)
T TIGR03254 417 GVMGIGMGYAIAAAVET-----G-----KPVVALEGDSAFGFSGMEVETICRYNLP------VCVVIFNNGGIYRGDDVN 480 (554)
T ss_pred CcCCchHHHHHHHHhcC-----C-----CcEEEEEcCchhcccHHHHHHHHHcCCC------EEEEEEeChhhhhhhhhh
Confidence 56999999999999983 2 3599999999997444444455444999 999999997 3111
Q ss_pred ---cCCC-CCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 439 ---TDPM-SGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 439 ---T~~~-~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.... ... ...++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+
T Consensus 481 ~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~i 537 (554)
T TIGR03254 481 VVGADPAPTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVI 537 (554)
T ss_pred hcCCCCCccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 0000 011 23578899999999999996 78888888877763 57899999987
No 134
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.38 E-value=1.4e-06 Score=104.52 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-c--ccc--
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-V--AFT-- 438 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~--g~t-- 438 (925)
+.+|..+|.|+|+++|. + .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ | +..
T Consensus 424 gsmG~glpaaiGa~la~-----~-----~~vv~i~GDG~f~m~~~EL~Ta~r~~lp------i~~vV~NN~~~~~~~~~~ 487 (569)
T PRK09259 424 GVMGIGMGYAIAAAVET-----G-----KPVVAIEGDSAFGFSGMEVETICRYNLP------VTVVIFNNGGIYRGDDVN 487 (569)
T ss_pred ccccccHHHHHHHHhcC-----C-----CcEEEEecCccccccHHHHHHHHHcCCC------EEEEEEeChhHHHHHHHH
Confidence 45999999999999983 2 3499999999997555555555444999 999999998 2 110
Q ss_pred ----cCCC-CC-cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 439 ----TDPM-SG-RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 439 ----T~~~-~~-rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.... .. ....+.+.+|++||+++++|+ +++++..+.++|++ .++|+|||+.+
T Consensus 488 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~i 545 (569)
T PRK09259 488 LSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVI 545 (569)
T ss_pred hhcCCCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEE
Confidence 0100 00 124678899999999999996 68888888887764 57899999997
No 135
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.37 E-value=8.4e-07 Score=105.72 Aligned_cols=110 Identities=17% Similarity=0.133 Sum_probs=81.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|++.|.. +. +|++.|||+|. -..+|-..++ +|| +++||.||+ ||+-..
T Consensus 403 g~mG~glpaaiGa~lA~~---------~r-~v~i~GDG~f~--m~~~EL~Ta~r~~lp------v~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 403 AGMGFGVPAGIGAQCTSG---------KR-ILTLVGDGAFQ--MTGWELGNCRRLGID------PIVILFNNASWEMLRV 464 (535)
T ss_pred chhhhHHHHHHHHHhCCC---------CC-eEEEEeChHHH--hHHHHHHHHHHcCCC------cEEEEEECCccceeeh
Confidence 679999999999999952 13 36799999996 4455555555 999 787777776 675431
Q ss_pred CC-----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PM-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~-----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. ......++..+|++||++.++|+ +++++..+.+.|++ ..++|+|||+.+
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~~p~lIev~i 520 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFA---TRGRFQLIEAML 520 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHh---cCCCeEEEEEEC
Confidence 11 01224678899999999999998 67888888887774 335689999976
No 136
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=98.37 E-value=5.4e-07 Score=107.79 Aligned_cols=111 Identities=16% Similarity=0.071 Sum_probs=80.9
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCC-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDP- 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~- 441 (925)
+.+|..+|.|+|+++| . + .-+||+.|||+|.-.+.-.+|+..-+|| +++||.||+ ||+-...
T Consensus 425 ~~~G~~lpaaiGaala-~----~-----~~vv~i~GDGsf~~~~~eL~Ta~r~~l~------i~ivVlNN~g~~~~~~~~ 488 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-S----A-----KPTVALIGDLSFLHDLNGLLLLKQVPAP------LTIVVVNNNGGGIFSLLP 488 (568)
T ss_pred cchhhHHHHHHHHHhc-C----C-----CCEEEEechHHhhcCcHHHHhhcccCCC------eEEEEEECCCCccccCCC
Confidence 4488899999999998 3 1 3479999999997444444443333999 888888888 5632110
Q ss_pred --CC---------CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 --MS---------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 --~~---------~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.. .-...++..+|++||++.++|+ +++++..+.+.|+ +.++|+|||+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~----~~~~p~lIev~i 548 (568)
T PRK07449 489 QPEEEPVFERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADAL----PTPGLTVIEVKT 548 (568)
T ss_pred CCCCcchhhHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHh----cCCCCEEEEEeC
Confidence 00 0123578899999999999886 7888888877776 357899999976
No 137
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.35 E-value=1.7e-06 Score=103.59 Aligned_cols=113 Identities=23% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|..+|.|+|+++|... .-+||+.|||+|.-.+.-.+|+.--+|| +++||.||+ |++..
T Consensus 414 g~mG~glpaaiGa~la~p~---------~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~------i~~vV~NN~~y~~i~~~~ 478 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGKPD---------KTVIDIAGDGSFQMNSQELATAVQNDIP------VIVAILNNGYLGMVRQWQ 478 (561)
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEeCchhhccHHHHHHHHHcCCC------eEEEEEECCccHHHHHHH
Confidence 5699999999999998642 4589999999997444444444444999 888888886 65421
Q ss_pred ------CCCCCc--CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 440 ------DPMSGR--SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 440 ------~~~~~r--ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
...... ...+++.+|++||+++++|+ +++++..+.+.|++ .++|+|||+.+=
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~ 538 (561)
T PRK06048 479 ELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVE 538 (561)
T ss_pred HHHcCCcccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 111111 24678999999999999987 67888887777763 578999999983
No 138
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=98.31 E-value=1.9e-06 Score=103.25 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc---
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT--- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT--- 439 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|.-.+.-.+|+.--+|| +++||.||+ |++-.
T Consensus 418 g~mG~glpaaiGa~lA~p~---------~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~------i~~vV~NN~~y~~i~~~q 482 (566)
T PRK07282 418 GTMGFGIPAAIGAKIANPD---------KEVILFVGDGGFQMTNQELAILNIYKVP------IKVVMLNNHSLGMVRQWQ 482 (566)
T ss_pred ccccchhhHhheeheecCC---------CcEEEEEcchhhhccHHHHHHHHHhCCC------eEEEEEeCCCchHHHHHH
Confidence 6799999999999999753 4489999999997666566666666999 777777777 66522
Q ss_pred ------CCC-CCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 ------DPM-SGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ------~~~-~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
... ... ...+++.+|++||+..++|+ +++++..+.+ ++ ..++|+|||+.+=+
T Consensus 483 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~----~~~~p~lIeV~v~~ 542 (566)
T PRK07282 483 ESFYEGRTSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VI----TEDVPMLIEVDISR 542 (566)
T ss_pred HHHhCCCcccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hh----cCCCCEEEEEEeCC
Confidence 111 111 24678999999999999997 6777776664 32 23789999998843
No 139
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.24 E-value=3.7e-06 Score=101.51 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+.+|..+|.|+|+++|... .-+|++.|||+|. .....|-.+.. ++| +++||.||+ ||++..
T Consensus 403 ~~mG~~~~~AiGa~~a~p~---------~~Vv~i~GDG~f~-~~g~~eL~tav~~~~~------i~~vVlnN~~~g~~~~ 466 (595)
T TIGR03336 403 LCMGASIGVASGLSKAGEK---------QRIVAFIGDSTFF-HTGIPGLINAVYNKAN------ITVVILDNRITAMTGH 466 (595)
T ss_pred eccCchHHHHhhhhhcCCC---------CCEEEEeccchhh-hcCHHHHHHHHHcCCC------eEEEEEcCcceeccCC
Confidence 6799999999999998653 4589999999996 32245555544 999 888888886 676542
Q ss_pred CCC---C-------cCcccHHHHHhhcCccEEEEe-CCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 441 PMS---G-------RSSQYCTDVAKALDAPIFHVN-GDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 441 ~~~---~-------rss~~~~d~Aka~giP~~~Vd-G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
... . ....++..+|+++|++.++|. -.|++++..+.+.|++ ..+|++|++..
T Consensus 467 q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 467 QPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 110 0 123578999999999999984 4677777777777774 57899999953
No 140
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.02 E-value=9.6e-05 Score=80.68 Aligned_cols=195 Identities=17% Similarity=0.232 Sum_probs=137.3
Q ss_pred HHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCC
Q 002419 645 AFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPN 724 (925)
Q Consensus 645 A~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~ 724 (925)
+|..|-..+.++++.=-|+..-| . | ..+. ++| |.|++|--|+|+.++|++.|.|+.|.+
T Consensus 16 ~L~~l~~~~~diVvl~ADl~~St-~----------~-------~~f~--~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~ 74 (312)
T COG3958 16 TLAELGRKNSDIVVLDADLSSST-K----------T-------GYFA--KEF-PDRFFNVGIAEQDMVGTAAGLALAGKK 74 (312)
T ss_pred HHHHHHhcCCCEEEEeccccccc-c----------h-------hHHH--HhC-chhheecchHHHHHHHHHHHHHhcCCC
Confidence 45667788899998888875311 1 1 3444 556 899999999999999999999999999
Q ss_pred cceeechhhhhhHh-hHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCC
Q 002419 725 SLVMWEAQFGDFAN-GAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDS 800 (925)
Q Consensus 725 ~lviwEaqFgDF~~-~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg 800 (925)
|++ --|+-|+. -|..||-+-|+- . ..++-+..-| |+ .| -|+.|-+ +|- -.++..+|
T Consensus 75 Pfv---~tfa~F~s~Ra~EQir~~iay--~----~lnVKiv~t~~G~t~g~dG~sHq~--~ED--------iaimR~lp- 134 (312)
T COG3958 75 PFV---STFAAFLSRRAWEQIRNSIAY--N----NLNVKIVATHAGVTYGEDGSSHQA--LED--------IAIMRGLP- 134 (312)
T ss_pred cee---echHHHHHHHHHHHHHHHhhh--c----cCCeEEEEecCCcccCCCCccchh--HHH--------HHHHhcCC-
Confidence 987 47999988 888877664422 1 3677777777 54 45 6888854 564 35666777
Q ss_pred chhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeE---
Q 002419 801 TLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKR--- 877 (925)
Q Consensus 801 ~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~--- 877 (925)
||.|+.|+.+-++..+++..+.- +.|+-+ .|.|.+... ++++- + -.|+.
T Consensus 135 ---------n~~V~~P~D~v~~~~i~~~~~~~--~GP~Y~----Rl~R~~~p~-~~~~~-~-----------~~F~iGka 186 (312)
T COG3958 135 ---------NMTVIAPADAVETRAILDQIADY--KGPVYM----RLGRGKVPV-VVDEG-G-----------YTFEIGKA 186 (312)
T ss_pred ---------CceEEccCcHHHHHHHHHHHHhc--CCCEEE----EecCCCCCc-eecCC-C-----------ceEeccce
Confidence 69999999999999888876655 899877 455644432 22221 0 22332
Q ss_pred -eecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 878 -LIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 878 -vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
||-|. ++ -+|+.||-+-..-+++-+++..-|
T Consensus 187 ~vLrdG-------~D--~tiiA~G~mv~~al~AA~~L~~~G 218 (312)
T COG3958 187 NVLRDG-------SD--LTIIATGVMVAEALEAAEILKKEG 218 (312)
T ss_pred eEeecC-------Cc--eEEEecCcchHHHHHHHHHHHhcC
Confidence 34332 22 489999998888777777765443
No 141
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.01 E-value=8.9e-05 Score=88.34 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc-----CCCCCCcccEEEEEEeCCcccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-----ALPNYSIGGTIHIVVNNQVAFT 438 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA-----~LP~y~~GGvI~vV~NNq~g~t 438 (925)
+.||..+.+|.|+|+=.. +.++.|+.|||... .|- +-++ -|.--+.|-++=|..=|+|-|+
T Consensus 153 GeLGy~l~ha~gAa~d~P---------dli~~~vvGDGeae-tgp----latsWhs~kf~np~~dGavLPIL~lNGykI~ 218 (793)
T COG3957 153 GELGYALSHAYGAAFDNP---------DLIVACVVGDGEAE-TGP----LATSWHSNKFLNPARDGAVLPILHLNGYKIE 218 (793)
T ss_pred cchhHHHHHHHHhhcCCC---------CcEEEEEecccccc-cCc----cccccccccccCccccCceeeEEEecceecc
Confidence 558888888888887433 28999999999433 232 2222 1221245667778888999999
Q ss_pred cCCCCCcCc-ccHHHHHhhcCccEEEEeCCCHHHHHHHH
Q 002419 439 TDPMSGRSS-QYCTDVAKALDAPIFHVNGDDMEAVAHVC 476 (925)
Q Consensus 439 T~~~~~rss-~~~~d~Aka~giP~~~VdG~D~eAV~~a~ 476 (925)
-++.-+|-+ ..+....++||..-+-|+|.|+.++..++
T Consensus 219 npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 219 NPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred CceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 877766654 34778899999999999999998855444
No 142
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.84 E-value=3.4e-05 Score=102.85 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=82.9
Q ss_pred cccCCccc--ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHh--cCCCCCCcccEEEEEEeCCc-
Q 002419 361 ANPSHLEA--VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHL--SALPNYSIGGTIHIVVNNQV- 435 (925)
Q Consensus 361 ~npShlg~--~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~Ealnl--A~LP~y~~GGvI~vV~NNq~- 435 (925)
.|=+.+|. .+|.|+|++.|. + .-+||+.|||+|.-.+.-.+|+.- .+|| +++||.||+-
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~-----r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lp------i~iVV~NN~gg 819 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----N-----KRVLCVVGDISFLHDTNGLSILSQRIARKP------MTILVINNHGG 819 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----C-----CCEEEEEehHHHHhhhhHHHHhhcccCCCC------EEEEEEeCCCc
Confidence 34455776 699999999885 1 348999999999745444455433 3799 8888888884
Q ss_pred ccccC-C-----C-------CC-cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 436 AFTTD-P-----M-------SG-RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 436 g~tT~-~-----~-------~~-rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
|+-.. + . .. -...++..+|++||++.++|+ +++++..+.+.|. +.++|+|||+.|=
T Consensus 820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~----~~~~p~lIEV~t~ 889 (1655)
T PLN02980 820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQ----VEQMDCVVEVESS 889 (1655)
T ss_pred HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhh----ccCCCEEEEEecC
Confidence 44321 0 0 00 123578999999999999998 6888887766665 4588999999994
No 143
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.63 E-value=0.0001 Score=83.30 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=91.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCC-cccccCCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTTDPM 442 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT~~~ 442 (925)
+.+|.++|.|+|+..|... .++|=+-|||+|+..+.-..+....++| +-.++.||+ .|+-|.-+
T Consensus 524 GtMGfGLPAAIGAsVA~P~---------~iViDIDGDaSF~Mt~~ELat~rq~~~P------VKiLiLNNeeqGMVtQWq 588 (675)
T KOG4166|consen 524 GTMGFGLPAAIGASVANPD---------AIVIDIDGDASFIMTVQELATIRQENLP------VKILILNNEEQGMVTQWQ 588 (675)
T ss_pred cccccCcchhhcccccCcc---------cEEEeccCCceeeeehHhhhhhhhcCCc------eEEEEecchhhhhHHHHH
Confidence 4589999999999998775 7999999999999777777777777999 888888998 48776422
Q ss_pred C----------CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 443 S----------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 443 ~----------~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
+ ..-.+++..+|.+.|++..+|.-. |++.+.+++-+ ..+||||+|+.|-
T Consensus 589 ~lFYe~rysHThQ~nPnf~klA~AmGikalRV~K~--edL~~k~kefl----sTkGPvLleV~v~ 647 (675)
T KOG4166|consen 589 DLFYEARYSHTHQENPNFLKLAAAMGIKALRVTKK--EDLREKIKEFL----STKGPVLLEVIVP 647 (675)
T ss_pred HHHHHhhhccccccCccHHHHHHhcCCchheeehH--HHHHHHHHHHh----CCCCCeEEEEEcc
Confidence 1 122478889999999999999844 77777777776 5799999999884
No 144
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.53 E-value=0.00062 Score=78.54 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=81.2
Q ss_pred cccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeC-C-cccccCCCC
Q 002419 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNN-Q-VAFTTDPMS 443 (925)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NN-q-~g~tT~~~~ 443 (925)
+|-+..-|+++|.+. .+ .-++|+.||+||-=-+.-.||+---+|| +|.||.|| + ||+.+....
T Consensus 432 MGVG~Gfalaaa~~~----P~-----~~V~~veGDsaFGfSaME~ET~vR~~Lp------vv~vV~NN~Giyg~d~~~~~ 496 (571)
T KOG1185|consen 432 MGVGLGFALAAALAA----PD-----RKVVCVEGDSAFGFSAMELETFVRYKLP------VVIVVGNNNGIYGLDDDGWK 496 (571)
T ss_pred cccchhHHHHHHhhC----CC-----CeEEEEecCcccCcchhhHHHHHHhcCC------eEEEEecCCcccccCcccHH
Confidence 555544555555554 32 6799999999996678999999999999 88888866 4 466543221
Q ss_pred Cc---------------CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 444 GR---------------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 444 ~r---------------ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
+- .....-.++|++|..++-|+ .++++..+++.|.+ ...+|++|.+.-
T Consensus 497 ~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI 559 (571)
T KOG1185|consen 497 QISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLI 559 (571)
T ss_pred HHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEe
Confidence 11 11234568999999999999 78999988888774 677999999874
No 145
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=97.45 E-value=8.4e-05 Score=91.33 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=57.1
Q ss_pred chhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc----cCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhcc
Q 002419 730 EAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH----GYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQ 805 (925)
Q Consensus 730 EaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh----G~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~ 805 (925)
=+--||=++..|-++-.-++ ...-|+...|-||.+-. |+ +-.|+||-+- .|.--.+ -.-.+|+
T Consensus 651 i~~hGdaafagQGvV~Etln-la~l~~y~tGGtIhvivNNqiGf-tT~p~~~Rss--~y~td~a----k~~~~Pi----- 717 (1228)
T PRK12270 651 ILLHGDAAFAGQGVVAETLN-LSQLRGYRTGGTIHIVVNNQVGF-TTAPESSRSS--EYATDVA----KMIQAPI----- 717 (1228)
T ss_pred EEEeccccccCCchHHHHHH-HHhccCCCCCCeEEEEEecCccc-ccCccccccc--hhhHHHH----hhcCCCE-----
Confidence 34678988777876665553 34678887766665532 55 3457766551 1211111 1123554
Q ss_pred ccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEE
Q 002419 806 IQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVV 840 (925)
Q Consensus 806 ~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~ 840 (925)
+.| +--.|.-.....|-++. +.|.+|+||
T Consensus 718 -----fhV-NGdDpeAv~~va~lA~~yr~~f~~dVvI 748 (1228)
T PRK12270 718 -----FHV-NGDDPEAVVRVARLAFEYRQRFHKDVVI 748 (1228)
T ss_pred -----EeE-CCCCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 444 77899988888888764 678999987
No 146
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.33 E-value=0.0009 Score=75.31 Aligned_cols=183 Identities=21% Similarity=0.322 Sum_probs=104.2
Q ss_pred ccCccchHHHHHHHH---HHHh-hcCCC-cEEEcCCccchHHHHHHh-cCCC--------------HHHHHHHhcCCCCC
Q 002419 265 LEGGETLIPGMKEMF---DRAA-DLGVE-SIVIGMPHRGRLNVLGNV-VRKP--------------LRQIFSEFSGGTRP 324 (925)
Q Consensus 265 ~eG~Ea~i~gl~~~l---~~a~-~~gv~-D~vigm~HRgrln~La~v-lg~p--------------~~~ifaEf~G~~~~ 324 (925)
+.|+=+..||+..+. .+.. +.+.+ =+|.|+-|=+-+ ++|+. |.-+ +..+|.+| .-
T Consensus 46 llGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pa-i~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S~--- 120 (379)
T PF09364_consen 46 LLGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPA-ILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-SF--- 120 (379)
T ss_dssp --S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHH-HHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-TS---
T ss_pred cccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchh-hhhhhhhcCccccccCCCCCCHHHHHHHHHhC-CC---
Confidence 588888888876553 2222 22332 457788775544 45543 2222 34455555 11
Q ss_pred CCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccC
Q 002419 325 VDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFA 404 (925)
Q Consensus 325 ~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~s 404 (925)
+ || +..|.+ ++ ++|. | .--+-||..+.+|.|+++-..+ -+++|++|||.+.
T Consensus 121 P------gG---ipSH~~--p~--tPGs--I-----hEGGELGYaLshA~GA~~DnPd---------liv~~vvGDGEaE 171 (379)
T PF09364_consen 121 P------GG---IPSHVS--PE--TPGS--I-----HEGGELGYALSHAFGAVFDNPD---------LIVACVVGDGEAE 171 (379)
T ss_dssp T------TS---B-SSS---TT--STT---S--------SSTS-HHHHHHHHHTT-TT----------EEEEEEETTGGG
T ss_pred C------CC---CccccC--cC--CCCc--c-----CcCcchhhHHHHHhhcccCCCC---------eEEEEEecCCccc
Confidence 1 11 335764 22 2221 1 1113488888888888885443 8999999999998
Q ss_pred CcchHHHHHHhc-CCCCCCcccEEEEEEeCCcccccCCCCCcCc-ccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHH
Q 002419 405 GQGVVYETLHLS-ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSS-QYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEW 482 (925)
Q Consensus 405 GqG~v~EalnlA-~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss-~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~ 482 (925)
.|-..-+-... =|.-=+.|-|+=|+.=|+|-|+-++-.+|.+ ..+.+..++||...+.|+|+|++++...+..|+++
T Consensus 172 -TGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~ 250 (379)
T PF09364_consen 172 -TGPLAASWHSNKFLNPATDGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDW 250 (379)
T ss_dssp -SHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHH
T ss_pred -CCcccccccccceeCcccCceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 88766555433 2222344557777777999999876655544 45888899999999999999999998877666554
No 147
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=97.22 E-value=0.00082 Score=78.35 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=79.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCcccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~g~tT~~ 441 (925)
+++|..+|.|+|++.|.++ +-+|+|+||||+ |-.++|-=.|- +||- +|||+.|++|-+-...
T Consensus 411 GSIG~t~pAalGa~~A~~d---------rR~IL~iGDGs~--QlTvQEiStmiR~gl~p-----~ifvlNN~GYTIEr~I 474 (557)
T COG3961 411 GSIGYTLPAALGAALAAPD---------RRVILFIGDGSL--QLTVQEISTMIRWGLKP-----IIFVLNNDGYTIERAI 474 (557)
T ss_pred hhcccccHhhhhhhhcCCC---------ccEEEEEcCchh--hhhHHHHHHHHHcCCCc-----EEEEEcCCCcEEEehh
Confidence 6799999999999999987 459999999998 78999987777 7774 8888888888665432
Q ss_pred CCC------cCcccHHHHHhhcCccEEEE--eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 442 MSG------RSSQYCTDVAKALDAPIFHV--NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 442 ~~~------rss~~~~d~Aka~giP~~~V--dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
... -.+-+.+.+-++||.--.+. ...-.+....+...+.+ ..+++.+||++.-
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp 535 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLP 535 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecC
Confidence 221 11245677888887643222 12223344444444432 4457999999863
No 148
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.12 E-value=0.0031 Score=62.13 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=81.1
Q ss_pred ceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC--CCCCc
Q 002419 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGP 774 (925)
Q Consensus 698 ~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~--~G~Gp 774 (925)
+.+.++.+.+|.+.++++.||+..+.++++ ..++|.|+..+. +++... |....|++++..+ |. .+.+.
T Consensus 34 ~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~--~~~~gpg~~~~~---~~l~~a----~~~~~Pvl~i~~~~~~~~~~~~~ 104 (154)
T cd06586 34 DKRIIDTVIHELGAAGAAAGYARAGGPPVV--IVTSGTGLLNAI---NGLADA----AAEHLPVVFLIGARGISAQAKQT 104 (154)
T ss_pred CCceEEeeCCHHHHHHHHHHHHHhhCCEEE--EEcCCCcHHHHH---HHHHHH----HhcCCCEEEEeCCCChhhhccCc
Confidence 457889999999999999999999777766 899999987666 555422 3345899999865 43 24455
Q ss_pred cCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhc--cCCCcEEEEecc
Q 002419 775 EHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMSPK 844 (925)
Q Consensus 775 eHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~--~~~~Pli~~~pK 844 (925)
.|+.. ...+ +.++++ +.+..| ++.+....++++++. ..+.|+++..|+
T Consensus 105 ~q~~~-~~~~----------~~~~~~----------~~~~~~-~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 105 FQSMF-DLGM----------YRSIPE----------ANISSP-SPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccccC-HHHH----------HHHhhh----------eEEEeC-CHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 55554 2222 334554 777665 556777777777762 237899998764
No 149
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.03 E-value=0.0066 Score=67.60 Aligned_cols=114 Identities=20% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc-CCCCCCcccEEEEEEeCC-cccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS-ALPNYSIGGTIHIVVNNQ-VAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA-~LP~y~~GGvI~vV~NNq-~g~tT~~ 441 (925)
|.-|-..|+|.|+.+|.+. -.+|++-|||...+-|.-+=.=.+. +.. +.+||.||+ ||.|.-.
T Consensus 70 s~~gra~a~atGik~A~~~---------l~Viv~gGDG~~~dIG~~~l~h~~~Rn~d------it~iv~DNevYgnTggQ 134 (294)
T COG1013 70 SLHGRAAAVATGIKLANPA---------LSVIVIGGDGDAYDIGGNHLIHALRRNHD------ITYIVVDNEVYGNTGGQ 134 (294)
T ss_pred eccCcchhhHHHHHHhccC---------CeEEEEecchhHhhhhhHHHHHHHHcCCC------eEEEEECCeecccCCCc
Confidence 3467888999999999876 4699999999665466544222222 777 999999999 4665311
Q ss_pred C----------------C-CcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 M----------------S-GRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 ~----------------~-~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
. . .+.-.++..+|-++|.+.+ ++---|+....+.+++|++ .+||.||++.+
T Consensus 135 ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~----~~Gps~I~v~s 203 (294)
T COG1013 135 ASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAE----HKGPSFIDVLS 203 (294)
T ss_pred cCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHh----ccCCeEEEEec
Confidence 1 1 0012378889999999866 5666779999999999986 46999999974
No 150
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=96.92 E-value=1.7 Score=53.04 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=84.6
Q ss_pred cccccceeehhhhhhhhhcCC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccC
Q 002419 366 LEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTD 440 (925)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~ 440 (925)
+|-+...|+=.|+-.++.... .+..+.-++||.|||.+. ++...+++.+| +|.+ +||||.-|.--...|
T Consensus 194 mGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmD-Epes~gAi~~A~re~LdN-----lifVincNlQrLDgp 267 (887)
T COG2609 194 MGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMD-EPESRGAITEAAREKLDN-----LIFVINCNLQRLDGP 267 (887)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccC-CchhhHHHHHHHHhcCCc-----eEEEEecchhhcCCc
Confidence 333333444444545554322 235567899999999999 99999999999 9998 999999998766555
Q ss_pred CCCCc-CcccHHHHHhhcCccEEEE-------------------------------------------------------
Q 002419 441 PMSGR-SSQYCTDVAKALDAPIFHV------------------------------------------------------- 464 (925)
Q Consensus 441 ~~~~r-ss~~~~d~Aka~giP~~~V------------------------------------------------------- 464 (925)
...-- --..+-.+.++.|+.|+.|
T Consensus 268 VrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aL 347 (887)
T COG2609 268 VRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAAL 347 (887)
T ss_pred ccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHH
Confidence 43210 0011223344445544433
Q ss_pred --------------eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCC
Q 002419 465 --------------NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFG 501 (925)
Q Consensus 465 --------------dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~G 501 (925)
-|+|+..|+.|.+.|.+ .-++|++|-+.|..-+|
T Consensus 348 Va~~tD~diw~L~rGGHD~~ki~aA~~~A~~---~kg~PtvilA~TIKGyg 395 (887)
T COG2609 348 VADMTDDDIWALNRGGHDPEKVYAAFKKAQE---HKGRPTVILAKTIKGYG 395 (887)
T ss_pred HHhccHHHHHHHhcCCCCHHHHHHHHHHHhc---CCCCceEEEEeeecccc
Confidence 28999999998888876 23589999998855444
No 151
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=96.73 E-value=0.0017 Score=71.71 Aligned_cols=125 Identities=25% Similarity=0.320 Sum_probs=91.0
Q ss_pred ccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCc-
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV- 435 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~- 435 (925)
....++||..+|.|+|...|... .-+|.+.||=.|. =.. |-|... +|| -|||++||.|
T Consensus 415 cgqagplgwtipaalgv~~adp~---------r~vvalsgdydfq--fmi-eelavgaq~k~p------yihv~vnnayl 476 (592)
T COG3960 415 CGQAGPLGWTIPAALGVCAADPK---------RNVVAISGDYDFQ--FLI-EELAVGAQFKIP------YIHVLVNNAYL 476 (592)
T ss_pred cCccCCcccccchhhceeecCCC---------CceEEeecCchHH--HHH-HHHhhhhcccCc------eEEEEecchHH
Confidence 45668899999999999887543 4588899999884 333 444443 999 9999999987
Q ss_pred ccccCCCCCcCcccH--------------------HHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 436 AFTTDPMSGRSSQYC--------------------TDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 436 g~tT~~~~~rss~~~--------------------~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
|.....++.....|| ..++.+.|+..++|- +|++...|+..|.....+..-||+||++
T Consensus 477 glirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p~e~a~af~~a~~lm~eh~vpvvve~i 554 (592)
T COG3960 477 GLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQHRVPVVVEVI 554 (592)
T ss_pred HHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--ChHHhhHHHHHHHHHHHhcCCCeeeehH
Confidence 444333333332333 235666777777775 7888999999999888899999999998
Q ss_pred EeecCCCCC
Q 002419 496 CYRRFGHNE 504 (925)
Q Consensus 496 tYR~~GHne 504 (925)
--|..--+.
T Consensus 555 lervtnism 563 (592)
T COG3960 555 LERVTNISM 563 (592)
T ss_pred HHHhhcccc
Confidence 877654443
No 152
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.017 Score=66.71 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=75.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHH---HHHhcCCCCCCcccEEEEEEeCCccccc-
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYE---TLHLSALPNYSIGGTIHIVVNNQVAFTT- 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~E---alnlA~LP~y~~GGvI~vV~NNq~g~tT- 439 (925)
|.+|.-+.-++|+..|..+ .-++++.||||+. ..-.| ++.+ ...- +|.+..|-+||..-
T Consensus 444 SCMGYEiaG~lG~K~a~pd---------reV~vmVGDGSym--MlnSEL~Tsv~~-g~Ki-----~Vvl~DN~GyGCIn~ 506 (617)
T COG3962 444 SCMGYEIAGGLGAKAAEPD---------REVYVMVGDGSYM--MLNSELATSVML-GKKI-----IVVLLDNRGYGCINR 506 (617)
T ss_pred cccccccccccccccCCCC---------CeEEEEEcccchh--hhhHHHHHHHHc-CCeE-----EEEEECCCCcchhhh
Confidence 5688888888998866543 4589999999986 22223 2222 3441 34455555576531
Q ss_pred -----------------CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 -----------------DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 -----------------~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
..+.....-+++..|.+||+...+|+ +++++.. |++.+++..+.+||++.|
T Consensus 507 LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~a----AL~~Ak~~~~ttvi~I~t 574 (617)
T COG3962 507 LQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEA----ALADAKASDRTTVIVIDT 574 (617)
T ss_pred hhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHH----HHHHHHhCCCCEEEEEec
Confidence 12123445678889999999999998 7777766 566667789999999976
No 153
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=96.04 E-value=0.015 Score=67.98 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=80.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCcccccCC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQVAFTTDP 441 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~g~tT~~ 441 (925)
.++|..+|.++|.|.|.+. ..+|+|.|||+| |=.++|-..|. +||- .||++.||+|-+-...
T Consensus 415 gsIG~svga~lG~a~a~~e---------~rvilfiGDGs~--qlTvQeiStmir~gl~~-----~if~~NN~GYTIE~~I 478 (561)
T KOG1184|consen 415 GSIGWSVGATLGYAQAAPE---------KRVILFIGDGSF--QLTVQEISTMIRWGLKP-----IIFLINNGGYTIEVEI 478 (561)
T ss_pred eeccccchhhhhhhhccCC---------ceEEEEecCccc--eeeHHHHHHHHhcCCCc-----EEEEEeCCceEEEEee
Confidence 5689999999999999886 569999999999 69999999998 8884 6777777778665433
Q ss_pred CCC----cCcccHHHHHhhcCccE-----EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 442 MSG----RSSQYCTDVAKALDAPI-----FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 442 ~~~----rss~~~~d~Aka~giP~-----~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
.+. ..+-+.+++-.+||.-. .+|= --++...+.+.+.- .+.+++.+||++-
T Consensus 479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~--~~~e~~~~~~~~~~--~~~~~i~liEv~l 538 (561)
T KOG1184|consen 479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVR--TEEELVEAIKDATF--EKNDKIRLIEVIL 538 (561)
T ss_pred cCCCccccccchHHHHHHhhcCccceeEEeeec--cchHHHHHHhhhhh--cccCceEEEEEec
Confidence 221 11246778888887544 3321 12344555555541 3567799999964
No 154
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=94.67 E-value=0.24 Score=56.79 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=65.5
Q ss_pred cEEEEEEcCcccCCcchHHHHHHh-cCCCCCCcccEEEEEEeCC-ccccc-------C---------CCCCcCcccHHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHL-SALPNYSIGGTIHIVVNNQ-VAFTT-------D---------PMSGRSSQYCTDV 453 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~Ealnl-A~LP~y~~GGvI~vV~NNq-~g~tT-------~---------~~~~rss~~~~d~ 453 (925)
.-++++-|||....-|.-+=.=-+ .+.. +.+||.||. |+.|. | ........++..+
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~r~~n------i~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~i 225 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLASGEN------VNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMI 225 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHHcCCC------eEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHH
Confidence 358999999966534432211112 2777 889999998 57652 1 1112223568889
Q ss_pred HhhcCccEEE-EeC-CCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 454 AKALDAPIFH-VNG-DDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 454 Aka~giP~~~-VdG-~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
|.++|++.+- +-- -|+..+.+++++|.+ ++||.||++.+
T Consensus 226 a~a~g~~YVA~~s~~~~~~~~~~~i~eA~~----~~Gps~I~v~s 266 (365)
T cd03377 226 AMSYGNVYVAQIALGANDNQTLKAFREAEA----YDGPSLIIAYS 266 (365)
T ss_pred HHHcCCCEEEEEecccCHHHHHHHHHHHhc----CCCCEEEEEEc
Confidence 9999999774 543 599999999999985 59999999986
No 155
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=94.47 E-value=0.16 Score=61.21 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=79.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-ccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT~ 440 (925)
-.+|+.+.+|-|++++.. ..+|+++||+.|.-.|.-. -.|.. +.+ ++.+|.+|.+ ++|..
T Consensus 428 ~~mGssig~a~g~~~~~~----------k~~va~iGDsTF~HsGi~~-l~nAV~n~~~------~~~vvLdN~~tAMTGg 490 (640)
T COG4231 428 TMMGSSIGIAGGLSFAST----------KKIVAVIGDSTFFHSGILA-LINAVYNKAN------ILVVVLDNRTTAMTGG 490 (640)
T ss_pred hhccchhhhccccccccC----------CceEEEeccccccccCcHH-HHHHHhcCCC------eEEEEEeccchhccCC
Confidence 347777888888887644 4599999999998667655 44444 888 8888888886 77652
Q ss_pred -CCCC---------cCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q 002419 441 -PMSG---------RSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 441 -~~~~---------rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
+..+ +..-.+.++.|+.|+.-+. ||=.|+.++.++.++|++ ..+|.+|-+
T Consensus 491 Qp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViia 551 (640)
T COG4231 491 QPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIA 551 (640)
T ss_pred CCCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEE
Confidence 2221 1224577889999998776 566889999888888875 678888765
No 156
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=93.35 E-value=0.71 Score=53.39 Aligned_cols=120 Identities=12% Similarity=0.145 Sum_probs=71.0
Q ss_pred EEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCCCC-ccCCC
Q 002419 701 VSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQG-PEHSS 778 (925)
Q Consensus 701 V~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G~G-peHSs 778 (925)
++..- ||-+.++.++|+|++|-|.++- --=+-|+. .+..+ .++.+ ...|+||..-. +.-+.| |.+++
T Consensus 51 ~vq~E-~E~aA~~~a~GAs~aG~Ra~Ta--TSg~Gl~l-m~E~~--~~a~~-----~e~P~Viv~~~R~gp~tg~p~~~~ 119 (376)
T PRK08659 51 FIQME-DEIASMAAVIGASWAGAKAMTA--TSGPGFSL-MQENI--GYAAM-----TETPCVIVNVQRGGPSTGQPTKPA 119 (376)
T ss_pred EEEeC-chHHHHHHHHhHHhhCCCeEee--cCCCcHHH-HHHHH--HHHHH-----cCCCEEEEEeecCCCCCCCCCCcC
Confidence 34444 9999999999999999999981 00011111 11111 01111 14799987743 221222 33332
Q ss_pred chhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEeccccc
Q 002419 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLL 847 (925)
Q Consensus 779 ~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Ll 847 (925)
. -+-...+ +. -+-+..+.|+.|+|+.++|.+...+.. .+++-|++++..+.|-
T Consensus 120 q-~D~~~~~-------~~--------~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~ls 174 (376)
T PRK08659 120 Q-GDMMQAR-------WG--------THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVG 174 (376)
T ss_pred c-HHHHHHh-------cc--------cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhh
Confidence 2 1111110 00 122345899999999999999998865 4789999999998543
No 157
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=93.07 E-value=0.88 Score=55.61 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=74.6
Q ss_pred chHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCccCCCchhhhhhh
Q 002419 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQ 786 (925)
Q Consensus 707 SE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs~R~ErfLq 786 (925)
+|.+.+..++|+|++|-|.+|.+= |-=.|.++ |.+...+ .-+...|+|+.+-.+ .||- |+ +.|-
T Consensus 54 ~E~~a~~~~~GAs~aG~ra~t~ts---~~Gl~~~~---e~l~~~~--~~g~~~~iV~~~~~~---~gp~-~~-~~~q--- 117 (595)
T TIGR03336 54 NEKVAVEVAAGAAWSGLRAFCTMK---HVGLNVAA---DPLMTLA--YTGVKGGLVVVVADD---PSMH-SS-QNEQ--- 117 (595)
T ss_pred CHHHHHHHHHHHHhcCcceEEEcc---CCchhhhH---HHhhhhh--hhcCcCceEEEEccC---CCCc-cc-hhhH---
Confidence 899999999999999999998544 22233344 5554322 113367888887543 2221 21 1220
Q ss_pred ccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCCC
Q 002419 787 MSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 787 l~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~~ 850 (925)
+..++ ..+..|-|..|+|+.++|.+.+.+.+ ..++-||+++..+.|-...
T Consensus 118 ----~d~~~----------~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~ 169 (595)
T TIGR03336 118 ----DTRHY----------AKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMR 169 (595)
T ss_pred ----hHHHH----------HHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccce
Confidence 00011 11224889999999999999999865 5799999999998665433
No 158
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=91.90 E-value=3.5 Score=47.34 Aligned_cols=182 Identities=12% Similarity=0.082 Sum_probs=102.6
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhC-CcCCcEEEcCccCCCCC-----ccCCC
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL-RQSGLVVMLPHGYDGQG-----PEHSS 778 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~-~~~~lv~~lPhG~~G~G-----peHSs 778 (925)
.=+|-+.++.++|+|++|-|+++ +.-|-....++..| ..+. ...|+||.+-..- |.+ ++|++
T Consensus 54 ~E~E~aA~~~a~GAs~aG~Ra~t---aTSg~Gl~lm~E~l--------~~a~~~e~P~v~v~v~R~-~p~~g~t~~eq~D 121 (352)
T PRK07119 54 AESEVAAINMVYGAAATGKRVMT---SSSSPGISLKQEGI--------SYLAGAELPCVIVNIMRG-GPGLGNIQPSQGD 121 (352)
T ss_pred eCcHHHHHHHHHHHHhhCCCEEe---ecCcchHHHHHHHH--------HHHHHccCCEEEEEeccC-CCCCCCCcchhHH
Confidence 77999999999999999999998 22222222222111 1221 2478888764422 222 24443
Q ss_pred chhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCCCCCCCCc
Q 002419 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKECKSNL 856 (925)
Q Consensus 779 ~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~~~~~s~~ 856 (925)
. +.++ . . .-|-+.+|.|..|+||.++|.+.+.+.+ .+++-|+|++..+.|- |-.....+
T Consensus 122 ~----~~~~-~--------~-----~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ls-h~~~~v~~ 182 (352)
T PRK07119 122 Y----FQAV-K--------G-----GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLG-QMMEPVEF 182 (352)
T ss_pred H----HHHH-h--------c-----CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhh-CceeeecC
Confidence 3 2111 0 0 0123456999999999999999999865 4689999999999764 33222222
Q ss_pred ccccccCCCCC-CCCCCCc---eeEe--------------------ec---C--CCCCCCCCCCccEEEEecchHHHHHH
Q 002419 857 SEFDDVQGHPG-FDKQGTR---FKRL--------------------IK---D--QNEHSDLEEGIRRLILCSGKVSSAVC 907 (925)
Q Consensus 857 ~~~~~~~~~~~-~~~~~~~---F~~v--------------------i~---d--~~~~~~~~~~v~rvilcsGkvyydL~ 907 (925)
.+....+.+|. ...|+.. ...+ +. . ........++-+.+|+|+|-.+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~ 262 (352)
T PRK07119 183 PPRKKRPLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAK 262 (352)
T ss_pred CchhhcccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHH
Confidence 22211112221 1112211 1110 00 0 00000012356789999999999999
Q ss_pred HHHHHhhhcc
Q 002419 908 VALYFFYNFG 917 (925)
Q Consensus 908 ~~~~~~~~~~ 917 (925)
++.+.+-.-|
T Consensus 263 eA~~~L~~~G 272 (352)
T PRK07119 263 SAVDMAREEG 272 (352)
T ss_pred HHHHHHHHcC
Confidence 9998875433
No 159
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=91.90 E-value=1.2 Score=58.52 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=65.7
Q ss_pred cEEEEEEcCcccCCcc--hHHHHHHhcCCCCCCcccEEEEEEeCC-ccccc-------C---------CCCCcCcccHHH
Q 002419 392 NMAVLIHGDGSFAGQG--VVYETLHLSALPNYSIGGTIHIVVNNQ-VAFTT-------D---------PMSGRSSQYCTD 452 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG--~v~EalnlA~LP~y~~GGvI~vV~NNq-~g~tT-------~---------~~~~rss~~~~d 452 (925)
.-++++-|||..-.-| .++=++. .+.. +.+||.||+ |+-|. | ........++..
T Consensus 952 ~sv~~~~GDG~~~diG~~~l~~~~~-r~~~------v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~ 1024 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGYGGLDHVLA-SGKD------VNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGM 1024 (1165)
T ss_pred ceeEEEecchhhhccCccchHHHHH-cCCC------eEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHH
Confidence 3689999999664344 2222221 2777 888999998 56542 2 111222356778
Q ss_pred HHhhcCccEE-EEe-CCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 453 VAKALDAPIF-HVN-GDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 453 ~Aka~giP~~-~Vd-G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
+|.++|.+.+ ++- |.++..+.+++++|.+ ++||.+|++.+
T Consensus 1025 ~a~~~g~~yvA~~~~~~~~~~~~~~~~~A~~----~~G~s~i~~~~ 1066 (1165)
T TIGR02176 1025 MAMTYGYVYVAQVSMGANMQQTLKAFREAEA----YDGPSIVIAYS 1066 (1165)
T ss_pred HHHHCCCCEEEEEecccCHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 8999999866 465 5689999999999874 68999999986
No 160
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=91.43 E-value=2.1 Score=49.62 Aligned_cols=110 Identities=12% Similarity=0.115 Sum_probs=69.9
Q ss_pred chHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhh-CCcCCcEEEcCc--cCCCCCcc---CCCch
Q 002419 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH--GYDGQGPE---HSSAR 780 (925)
Q Consensus 707 SE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw-~~~~~lv~~lPh--G~~G~Gpe---HSs~R 780 (925)
||-+.++.++|+|++|-|.++ =.-=+-|+. .+.. + ..+ +...|+|+..-. |=.+.-|. |+.-
T Consensus 55 ~E~aA~~~a~GAs~aG~Ra~t--aTSg~G~~l-m~E~----~----~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~- 122 (375)
T PRK09627 55 DEISGISVALGASMSGVKSMT--ASSGPGISL-KAEQ----I----GLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDV- 122 (375)
T ss_pred CHHHHHHHHHHHHhhCCCEEe--ecCCchHHH-HhhH----H----HHHHhccCCEEEEEeccCCCcCCCCCccchHHH-
Confidence 999999999999999999998 211111222 1111 1 111 124699997654 33222243 3332
Q ss_pred hhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccc
Q 002419 781 LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNL 846 (925)
Q Consensus 781 ~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~L 846 (925)
..|+- +.+-+..+.|+.|+|+.++|.+...+.+ ..++-|||++..+.|
T Consensus 123 ---~~~~~---------------~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~l 172 (375)
T PRK09627 123 ---NQAKN---------------PTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETV 172 (375)
T ss_pred ---HHHhc---------------CCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHH
Confidence 11111 1122334779999999999999999865 579999999999955
No 161
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=91.17 E-value=0.81 Score=46.54 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=70.5
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccc-ccCC--CCCc--C
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAF-TTDP--MSGR--S 446 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~-tT~~--~~~r--s 446 (925)
.|.|.+++.+ ..++++..|=|.++.-..+.|+ ...+.| +|+|+-+....- .+.. .... .
T Consensus 50 mA~gyar~t~---------~gv~~~t~GpG~~n~~~gl~~A-~~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~ 113 (162)
T cd07038 50 AADGYARVKG---------LGALVTTYGVGELSALNGIAGA-YAEHVP------VVHIVGAPSTKAQASGLLLHHTLGDG 113 (162)
T ss_pred HHHHHHHhhC---------CEEEEEcCCccHHHHHHHHHHH-HHcCCC------EEEEecCCCccccccccceeeccccc
Confidence 4556666541 1567777789988866666666 344999 999986654221 1100 0000 0
Q ss_pred -cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q 002419 447 -SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 447 -s~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
..+..++.+.+--...+|. +++.+-.+++.|+..+..+++||+|++
T Consensus 114 ~~~d~~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 114 DFDVFLKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred chHHHHHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 1135667777777777775 788888999999999988899999987
No 162
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=89.56 E-value=2.5 Score=41.97 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=60.3
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|..+.-..++++..- ++| +|+|+-+....-.... .....+..++.+.+-...++++ ++++
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~-~~P------ll~i~~~~~~~~~~~~--~~q~~d~~~~~~~~~~~~~~i~--~~~~ 129 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLD-SIP------LLVITGQRPTAGEGRG--AFQEIDQVALFRPITKWAYRVT--SPEE 129 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh-CCC------EEEEeCCCccccccCC--cccccCHHHHHHHHhceEEEcC--CHHH
Confidence 445555577777644445544433 999 8988766553221111 1112345566666655667765 8899
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEE
Q 002419 472 VAHVCELAAEWRQTF-HSDVVVDL 494 (925)
Q Consensus 472 V~~a~~~A~e~rr~~-~~PvlIe~ 494 (925)
+...+..|+..+... ++||.|++
T Consensus 130 ~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 130 IPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEe
Confidence 999999999999887 79999987
No 163
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=89.22 E-value=0.51 Score=50.97 Aligned_cols=112 Identities=13% Similarity=0.254 Sum_probs=66.1
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCCC----CccCCCc
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQ----GPEHSSA 779 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G~----GpeHSs~ 779 (925)
.-||-+.++..+|+|++|-|.++. .=|-=++.++ +.+...+ +...|+||.+-. +..+. .++|+..
T Consensus 42 ~E~E~~A~~~~~GAs~aG~ra~t~---ts~~Gl~lm~---e~l~~a~----~~~~P~V~~~~~R~g~~~g~~~~~~q~D~ 111 (230)
T PF01855_consen 42 AESEHAAMEAAIGASAAGARAMTA---TSGPGLNLMA---EPLYWAA----GTELPIVIVVVQRAGPSPGLSTQPEQDDL 111 (230)
T ss_dssp -SSHHHHHHHHHHHHHTT--EEEE---EECCHHHHHC---CCHHHHH----HTT--EEEEEEEB---SSSB--SB-SHHH
T ss_pred ecchHHHHHHHHHHHhcCCceEEe---ecCCcccccH---hHHHHHH----HcCCCEEEEEEECCCCCCCCcCcCChhHH
Confidence 568999999999999999999981 1111122222 3222111 235788887643 22222 2344433
Q ss_pred hhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCCC
Q 002419 780 RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 780 R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~~ 850 (925)
.+.++.+|.|+.|+|+.+++.+.+.+.+ .+++.|||++..+.+.-|.
T Consensus 112 ------------------------~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~sh~ 160 (230)
T PF01855_consen 112 ------------------------MAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLCSHS 160 (230)
T ss_dssp ------------------------HHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCCTC-
T ss_pred ------------------------HHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhhcCc
Confidence 1223457999999999999999988854 5789999999999998444
No 164
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=89.22 E-value=1.2 Score=43.76 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=63.0
Q ss_pred ceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccH
Q 002419 371 PVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYC 450 (925)
Q Consensus 371 PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~ 450 (925)
.+|.|.+++.. ..++++.+|.|..+.-..++++. ..++| +|+|+......-.. .......+-
T Consensus 49 ~~A~G~a~~~~---------~~v~~~~~gpg~~~~~~~l~~a~-~~~~P------vl~i~~~~~~~~~~--~~~~q~~~~ 110 (154)
T cd06586 49 GAAAGYARAGG---------PPVVIVTSGTGLLNAINGLADAA-AEHLP------VVFLIGARGISAQA--KQTFQSMFD 110 (154)
T ss_pred HHHHHHHHhhC---------CEEEEEcCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhhc--cCcccccCH
Confidence 45666666532 15566666999887555555443 34999 99998655532111 111111122
Q ss_pred HHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q 002419 451 TDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 451 ~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
...++ ++|-..+--.++++....+..|++.+....+||+|++
T Consensus 111 ~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 111 LGMYR--SIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHHHH--HhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 23333 4555555456777888888888888777789999986
No 165
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=88.29 E-value=1.7 Score=50.54 Aligned_cols=114 Identities=10% Similarity=0.105 Sum_probs=75.2
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCCCC---ccCCCch
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQG---PEHSSAR 780 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G~G---peHSs~R 780 (925)
.=||.+.++.++|+|++|-|++| +.=|-=++.++ +.+...+- ...|+|+..-. +.-+.+ ++|+..
T Consensus 55 ~E~E~aA~~~aiGAs~aGaRa~T---aTSg~Gl~lm~---E~l~~aa~----~~lPiVi~~~~R~~p~~~~~~~~q~D~- 123 (390)
T PRK08366 55 VESEHSAMAACIGASAAGARAFT---ATSAQGLALMH---EMLHWAAG----ARLPIVMVDVNRAMAPPWSVWDDQTDS- 123 (390)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEe---eeCcccHHHHh---hHHHHHHh----cCCCEEEEEeccCCCCCCCCcchhhHH-
Confidence 45899999999999999999998 22222122222 33322211 25788876522 111222 234443
Q ss_pred hhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCCCCC
Q 002419 781 LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHKEC 852 (925)
Q Consensus 781 ~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~~~~ 852 (925)
+ +.++.+|.+..|+|+.++|.+...+.. .+++-|++++..+.++-|...
T Consensus 124 ---~--------------------~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~ 174 (390)
T PRK08366 124 ---L--------------------AQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYD 174 (390)
T ss_pred ---H--------------------HHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccc
Confidence 1 123345999999999999999999865 578999999999988776544
No 166
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=85.76 E-value=4.5 Score=41.26 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=61.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+.|+.. .++| +|+|.-+.....- .....-..+..++++.+---..+|+ +++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~-~~~P------vl~I~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 133 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKR-DRAP------VLAIAGQVPTDEL--GTDYFQEVDLLALFKDVAVYNETVT--SPEQ 133 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHh-cCCC------EEEEecCCccccc--CCCCCcccCHHHHHHHhhcEEEEeC--CHHH
Confidence 66777778888874444444331 2999 9999865553211 1111112356677777776667776 8888
Q ss_pred HHHHHHHHHHHHHccCCcEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
+.++++.|++.++..+|||.|++
T Consensus 134 ~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 134 LPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEe
Confidence 88888888888887789999998
No 167
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=85.73 E-value=3.4 Score=41.26 Aligned_cols=90 Identities=16% Similarity=0.112 Sum_probs=58.0
Q ss_pred EEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcC--ccEEEEeCCCHH
Q 002419 393 MAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALD--APIFHVNGDDME 470 (925)
Q Consensus 393 v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~g--iP~~~VdG~D~e 470 (925)
++++..|-|..+.-..++++.. .+.| +|+|+-+-...-...+ .. .... .|....++ .+++++ .|++
T Consensus 67 v~~~~~gpG~~n~~~~l~~a~~-~~~P------~v~i~g~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~--~~~~ 134 (160)
T cd07034 67 AMTATSGPGLNLMAEALYLAAG-AELP------LVIVVAQRPGPSTGLP-KP-DQSD-LMAARYGGHPWPVLAP--SSVQ 134 (160)
T ss_pred EEEeeCcchHHHHHHHHHHHHh-CCCC------EEEEEeeCCCCCCCCC-Cc-CcHH-HHHHHhCCCCEEEEeC--CCHH
Confidence 7778888888885555555554 4899 9999866443211110 00 0111 12222333 555555 4899
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEE
Q 002419 471 AVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 471 AV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
++...++.|++.++.+++||+|-+
T Consensus 135 ~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 135 EAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEc
Confidence 999999999999999989999865
No 168
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=84.75 E-value=3.8 Score=49.94 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=76.0
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCC--CC--CccCCCc
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYD--GQ--GPEHSSA 779 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~--G~--GpeHSs~ 779 (925)
.=||-+.++.++|+|++|-|++| +.=|-=.+.++..+ ..+.+ ...|+||..-. +.- |. -++|+.-
T Consensus 243 ~E~E~aA~~~a~GAs~aG~Ra~t---aTSg~Gl~lm~E~l--~~a~~-----~~~P~Vi~~~~R~gpstg~~t~~eq~D~ 312 (562)
T TIGR03710 243 AEDEIAAINMAIGASYAGARAMT---ATSGPGFALMTEAL--GLAGM-----TETPLVIVDVQRGGPSTGLPTKTEQSDL 312 (562)
T ss_pred eccHHHHHHHHHhHHhcCCceee---cCCCCChhHhHHHH--hHHHh-----ccCCEEEEEcccCCCCCCCCCCccHHHH
Confidence 34899999999999999999998 22222223344332 11111 24699998743 222 21 2344333
Q ss_pred hhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCCC
Q 002419 780 RLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 780 R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~~ 850 (925)
++.+-. .|-+..|.|+.|+|+.++|.+...+.+ ..++-|||++..+.|-.+.
T Consensus 313 ----~~~~~~---------------~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~ 366 (562)
T TIGR03710 313 ----LFALYG---------------GHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSY 366 (562)
T ss_pred ----HHHhcC---------------CCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCc
Confidence 222111 133456999999999999999998865 5799999999999886543
No 169
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=84.41 E-value=5 Score=40.87 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=63.7
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++++ ...++| +|+|+-.-..........+ ...+...+++.+.-...+|+ ++++
T Consensus 66 ~v~~~~~GpG~~n~~~~l~~A-~~~~~P------vl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~k~~~~v~--~~~~ 135 (172)
T PF02776_consen 66 GVVIVTSGPGATNALTGLANA-YADRIP------VLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVTKWSYRVT--SPDD 135 (172)
T ss_dssp EEEEEETTHHHHTTHHHHHHH-HHTT-E------EEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGSSEEEEEC--SGGG
T ss_pred eEEEeecccchHHHHHHHhhc-ccceee------EEEEecccchhhhcccccc-cchhhcchhccccchhcccC--CHHH
Confidence 566666677877755555554 444999 9999987775444322211 12356677888888888886 6677
Q ss_pred HHHHHHHHHHHH-HccCCcEEEEE
Q 002419 472 VAHVCELAAEWR-QTFHSDVVVDL 494 (925)
Q Consensus 472 V~~a~~~A~e~r-r~~~~PvlIe~ 494 (925)
+..+++.|+..+ ....+||+|++
T Consensus 136 ~~~~~~~A~~~a~~~~~gPv~l~i 159 (172)
T PF02776_consen 136 LPEALDRAFRAATSGRPGPVYLEI 159 (172)
T ss_dssp HHHHHHHHHHHHHHCSTSEEEEEE
T ss_pred HHHHHHHHHHHhccCCCccEEEEc
Confidence 777777888877 66789999998
No 170
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=83.71 E-value=11 Score=38.27 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=59.2
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCc-ccccCCCCCcCcccHH-HHHhhcCccEEEEeCCCH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQV-AFTTDPMSGRSSQYCT-DVAKALDAPIFHVNGDDM 469 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~-g~tT~~~~~rss~~~~-d~Aka~giP~~~VdG~D~ 469 (925)
..++|+.+=|..+.=.-++++....++| +|+|+-.-+. +-..+.. ....... ..-...++|...|+ ++
T Consensus 59 ~~~v~~~~sG~gn~~~~l~~a~~~~~~P------vl~i~g~rg~~~~~~~~q--~~~g~~~~~~l~~~~i~~~~i~--~~ 128 (157)
T TIGR03845 59 KPAILMQSSGLGNSINALASLNKTYGIP------LPILASWRGVYKEKIPAQ--IPMGRATPKLLDTLGIPYTIPR--EP 128 (157)
T ss_pred CcEEEEeCCcHHHHHHHHHHHHHcCCCC------EEEEEeccCCCCCCCccc--cchhhhhHHHHHHcCCCeEEeC--CH
Confidence 3456666666544344556666566999 9999854443 1111111 1111222 22355788988886 58
Q ss_pred HHHHHHHHHHHHHHHccCCcEEEEE
Q 002419 470 EAVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 470 eAV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
+.+ .++..|+..+.+.++||.|-+
T Consensus 129 e~~-~~i~~A~~~a~~~~gPv~il~ 152 (157)
T TIGR03845 129 EEA-KLIEKAISDAYENSRPVAALL 152 (157)
T ss_pred HHH-HHHHHHHHHHHhCCCCEEEEE
Confidence 899 999999999999999999866
No 171
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=83.52 E-value=4.5 Score=52.97 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-ccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT~ 440 (925)
.++|+....++|.+.+.+. .-+|.++|||.|---|.-- -.|.. +.+ ++++|-.|.. ++|.-
T Consensus 481 ~~MG~eg~~~~G~a~f~~~---------~hv~a~iGDgTffHSG~~a-l~~AV~~~~n------it~~IL~N~~vAMTGg 544 (1165)
T PRK09193 481 TQMGGEGVPWIGQAPFTDE---------KHVFQNLGDGTYFHSGLLA-IRAAVAAGVN------ITYKILYNDAVAMTGG 544 (1165)
T ss_pred eccCCcchhhceeccccCC---------CcEEEEeccccchhcCHHH-HHHHHhcCCC------eEEEEEeCCcccccCC
Confidence 5688888888998886221 2399999999997556544 33322 777 7777777774 88762
Q ss_pred -CCC-CcCcccHHHHHhhcCccEEEEeCCCHHHH-----------------HHHHHHHHHHHHccCCcEEEEE
Q 002419 441 -PMS-GRSSQYCTDVAKALDAPIFHVNGDDMEAV-----------------AHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 441 -~~~-~rss~~~~d~Aka~giP~~~VdG~D~eAV-----------------~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
+.. ..+...+++..++.|+.-+.|=.+||+.. ..++++++ |+..|+.+|-.
T Consensus 545 Q~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~ 614 (1165)
T PRK09193 545 QPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIY 614 (1165)
T ss_pred CCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 222 23456788999999998887766666655 34445544 25677777654
No 172
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=83.09 E-value=4.2 Score=47.43 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=72.8
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc--cCCCCC--ccCCCch
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH--GYDGQG--PEHSSAR 780 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh--G~~G~G--peHSs~R 780 (925)
.=||.+.++..+|+|++|-|..+ +.=|-=++ .+.+.+-..+ +...|+||.+.. +....+ ++||+.-
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~T---aTS~~Gl~---lm~E~l~~aa----g~~lP~V~vv~~R~~~~p~~i~~d~~D~~ 125 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFT---ATASQGLA---LMHEVLFIAA----GMRLPIVMAIGNRALSAPINIWNDWQDTI 125 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEe---eeccchHH---HHhhHHHHHH----HccCCEEEEECCCCCCCCCCcCcchHHHH
Confidence 34899999999999999999988 11111111 2223322111 235788887722 111212 2677651
Q ss_pred hhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--c--cCCCcEEEEecccccCCC
Q 002419 781 LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--R--EFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 781 ~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~--~~~~Pli~~~pK~Llr~~ 850 (925)
.+++.+|.+++|+|+.++|.+...+.+ . .+.-|++++....++-|-
T Consensus 126 ------------------------~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~ 175 (394)
T PRK08367 126 ------------------------SQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHT 175 (394)
T ss_pred ------------------------hccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCc
Confidence 123456999999999999999988865 3 344899999999866654
No 173
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=83.02 E-value=3.3 Score=48.47 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=73.7
Q ss_pred chHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCC----CccCCCchhh
Q 002419 707 SEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQ----GPEHSSARLE 782 (925)
Q Consensus 707 SE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~----GpeHSs~R~E 782 (925)
||-+.++..+|+|++|-|.++ +.=|-=++.++ +.+...+ +...|+|+..-.+..+. -++|+..
T Consensus 64 ~E~~A~~~~~GAs~aGaRa~T---aTS~~Gl~lm~---E~l~~aa----~~~~P~V~~~~~R~~~~~~~i~~d~~D~--- 130 (407)
T PRK09622 64 SEHAAMSACVGAAAAGGRVAT---ATSSQGLALMV---EVLYQAS----GMRLPIVLNLVNRALAAPLNVNGDHSDM--- 130 (407)
T ss_pred cHHHHHHHHHHHHhhCcCEEe---ecCcchHHHHh---hHHHHHH----HhhCCEEEEEeccccCCCcCCCchHHHH---
Confidence 999999999999999999988 22222122233 3333221 23579888775533211 1233332
Q ss_pred hhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhc--cC--CCcEEEEecccccCC
Q 002419 783 RFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EF--RKPLVVMSPKNLLRH 849 (925)
Q Consensus 783 rfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~--~~--~~Pli~~~pK~Llr~ 849 (925)
.+.++.+|.|+.|+|+.++|.+...+.+- .+ +.|++++....++-|
T Consensus 131 ---------------------~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh 180 (407)
T PRK09622 131 ---------------------YLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSH 180 (407)
T ss_pred ---------------------HHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhC
Confidence 11234569999999999999999998763 55 899999999998655
No 174
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=82.97 E-value=5.1 Score=46.46 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=74.7
Q ss_pred cccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchH--HHHHHhc---CCCCCCcccEEEEEEeCCcccccCCC
Q 002419 368 AVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPM 442 (925)
Q Consensus 368 ~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v--~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~ 442 (925)
+.+.+|+|+++|=.. +++ ++||||.. +|.+.++ ++| +|.++.+-. |-+|...
T Consensus 59 aA~~~a~GAs~aG~R-----------a~T-----aTSg~Gl~lm~E~~~~a~~~e~P------~Viv~~~R~-gp~tg~p 115 (376)
T PRK08659 59 ASMAAVIGASWAGAK-----------AMT-----ATSGPGFSLMQENIGYAAMTETP------CVIVNVQRG-GPSTGQP 115 (376)
T ss_pred HHHHHHHhHHhhCCC-----------eEe-----ecCCCcHHHHHHHHHHHHHcCCC------EEEEEeecC-CCCCCCC
Confidence 344567777776332 222 35788987 4888777 999 787777754 3333211
Q ss_pred CCcCcccHH-HHHhhc-CccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCC
Q 002419 443 SGRSSQYCT-DVAKAL-DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI 505 (925)
Q Consensus 443 ~~rss~~~~-d~Aka~-giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~ 505 (925)
-..+..+.. .+.-++ +.|.+.....|+++++..+..|.+.+.+++-||+|-..+| -+|+..
T Consensus 116 ~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 116 TKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred CCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 001111221 121222 4777777888999999999999999999999999999994 888743
No 175
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=82.29 E-value=4.1 Score=53.38 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=73.3
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCc-ccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV-AFT 438 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~-g~t 438 (925)
..++|+....++|.+.+... .-+|.++|||.|---|.- ++--| +.+ ++++|-+|.. ++|
T Consensus 467 ~~~MG~~g~~~~G~a~~~~~---------~~v~a~iGDgTf~HSG~~--al~~AV~~~~n------it~~IL~N~~tAMT 529 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFTET---------KHVFQNLGDGTYFHSGSL--AIRQAVAAGAN------ITYKILYNDAVAMT 529 (1159)
T ss_pred eeccCccchhhceeccccCC---------CCEEEEeccchhhhcCHH--HHHHHHhcCCC------eEEEEEeCCccccc
Confidence 35789999999999987321 238999999999755554 33333 788 8888888885 887
Q ss_pred cC-CCCC-cCcccHHHHHhhcCccEEEEeCCCHHH----------------HHHHHHHHHHHHHccCCcEEEEE
Q 002419 439 TD-PMSG-RSSQYCTDVAKALDAPIFHVNGDDMEA----------------VAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 439 T~-~~~~-rss~~~~d~Aka~giP~~~VdG~D~eA----------------V~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
.- +..+ -+.+.++...++.|+.-+.|=.+||+. ...++++++. +..|+.+|-.
T Consensus 530 GgQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~---~~~GvsViI~ 600 (1159)
T PRK13030 530 GGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR---ETPGVTVLIY 600 (1159)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh---cCCCcEEEEE
Confidence 62 2222 222334447789999888876666655 2334444442 5677877644
No 176
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=80.51 E-value=4 Score=49.05 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=69.4
Q ss_pred cccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHH--HHHhc---CCCCCCcccEEEEEEeCCccccc-
Q 002419 366 LEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYE--TLHLS---ALPNYSIGGTIHIVVNNQVAFTT- 439 (925)
Q Consensus 366 lg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~E--alnlA---~LP~y~~GGvI~vV~NNq~g~tT- 439 (925)
+.+.++-|+|+++|.+. -+|+++||=|+- |- +|-+. ..|- +|+|+.||+=||-.
T Consensus 424 IDG~vSTA~Gi~~a~~~----------ptv~liGDLS~l-----hD~NgLl~~k~~~~~l-----tIvv~NNnGGgIF~~ 483 (566)
T COG1165 424 IDGTVSTALGIARATQK----------PTVALIGDLSFL-----HDLNGLLLLKKVPQPL-----TIVVVNNNGGGIFSL 483 (566)
T ss_pred cchhHHHHhhhhhhcCC----------ceEEEEechhhh-----hccchHhhcCCCCCCe-----EEEEEeCCCceeeee
Confidence 45667889999998663 389999999974 22 12222 4442 77777777777743
Q ss_pred -CCCC-------CcC---cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 440 -DPMS-------GRS---SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 440 -~~~~-------~rs---s~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
|... ... .-+++..|+.||+..-+++. +.+...+...+. ...|=.+||++|=|-
T Consensus 484 Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l~y~~~~s--~~~l~~~~~~~~----~~~g~~viEvkt~r~ 548 (566)
T COG1165 484 LPQAQSEPVFERLFGTPHGLDFAHLAATYGLEYHRPQS--WDELGEALDQAW----RRSGTTVIEVKTDRS 548 (566)
T ss_pred ccCCCCcchHHHhcCCCCCCCHHHHHHHhCccccccCc--HHHHHHHHhhhc----cCCCcEEEEEecChh
Confidence 1111 112 24688899999999999875 344444333332 335689999998663
No 177
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=80.41 E-value=8.7 Score=39.11 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhh-CCcCCcEEEcCccCCCCCc----cCC--
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPHGYDGQGP----EHS-- 777 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw-~~~~~lv~~lPhG~~G~Gp----eHS-- 777 (925)
.-.|....|++.|+.+.+-++.++ =...| ..| .++.-..-+ ..+.||+++. |+.|..+ .|.
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~-~~~sG-~gn--------~~~~l~~a~~~~~~Pvl~i~--g~rg~~~~~~~~q~~~ 107 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAIL-MQSSG-LGN--------SINALASLNKTYGIPLPILA--SWRGVYKEKIPAQIPM 107 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEE-EeCCc-HHH--------HHHHHHHHHHcCCCCEEEEE--eccCCCCCCCccccch
Confidence 456777888888888888877752 23344 332 222222222 4578999986 3333311 111
Q ss_pred CchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhc--cCCCcEEEEecccc
Q 002419 778 SARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMSPKNL 846 (925)
Q Consensus 778 s~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~--~~~~Pli~~~pK~L 846 (925)
..-.|..||.+ ++......+|+|+ ..+.++++. ..++|+.++-+|++
T Consensus 108 g~~~~~~l~~~---------------------~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~ 156 (157)
T TIGR03845 108 GRATPKLLDTL---------------------GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKY 156 (157)
T ss_pred hhhhHHHHHHc---------------------CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 11133344433 3456666789999 999999863 44699999999876
No 178
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=78.74 E-value=5.6 Score=46.33 Aligned_cols=155 Identities=21% Similarity=0.217 Sum_probs=80.7
Q ss_pred cCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCccccccee-ehhhhhhhhhcC
Q 002419 307 VRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVV-IGKTRAKQYYSN 385 (925)
Q Consensus 307 lg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA-~G~A~A~q~~~~ 385 (925)
+|+.=.+||.|+|-+..-..- -||.|.--++.|- -+.+++|...++|-- .|+..|.+-+..
T Consensus 89 vg~tGg~If~emm~rqnV~tV-FgYPGGAilpv~d-----------------Ai~rS~~f~fvLPrHEQgaghaAegYaR 150 (675)
T KOG4166|consen 89 VGRTGGDIFVEMMERQNVETV-FGYPGGAILPVHD-----------------AITRSSSFRFVLPRHEQGAGHAAEGYAR 150 (675)
T ss_pred cCCchhHHHHHHHHhcCCceE-eecCCcceeehHh-----------------hhhcCccccccccccccccchhhhhhhh
Confidence 366677888888876542211 0122222233332 133455555555532 233333322211
Q ss_pred CCCCCCcEEEEEEcCcccCCcchHHHHHH--hc-CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEE
Q 002419 386 DMDRTKNMAVLIHGDGSFAGQGVVYETLH--LS-ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIF 462 (925)
Q Consensus 386 d~~~~~~v~v~~~GDGA~sGqG~v~Ealn--lA-~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~ 462 (925)
. .++..|+++..|-||++ +---|. +| ..| .||..-|+.-+.-..++.-..++..+.+++ .-.
T Consensus 151 ~-sgKPGvvlvTSGPGATN----vvtp~ADAlaDg~P--------lVvftGQVptsaIGtDAFQEadiVgisRSc--TKw 215 (675)
T KOG4166|consen 151 S-SGKPGVVLVTSGPGATN----VVTPLADALADGVP--------LVVFTGQVPTSAIGTDAFQEADIVGISRSC--TKW 215 (675)
T ss_pred h-cCCCcEEEEecCCCccc----ccchhhHHhhcCCc--------EEEEecccchhhcccchhccCCeeeeeecc--cee
Confidence 1 23458999999999998 222222 22 555 445555653222111222222222222222 111
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEE
Q 002419 463 HVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDL 494 (925)
Q Consensus 463 ~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~ 494 (925)
.|==.|+|++-+-..+|++.+-.++ ||||+|+
T Consensus 216 NvmVkdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 216 NVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred heeeecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 2223589999999999999999887 8999998
No 179
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=78.51 E-value=8 Score=44.45 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=71.6
Q ss_pred ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchH--HHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCC
Q 002419 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS 443 (925)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v--~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~ 443 (925)
.+.+|+|+++|=.. +++.. ||+|.. +|.|.+| .+| +++++.+-. +=+|-.
T Consensus 60 A~~~a~GAs~aG~R-----------a~taT-----Sg~Gl~lm~E~l~~a~~~e~P------~v~v~v~R~-~p~~g~-- 114 (352)
T PRK07119 60 AINMVYGAAATGKR-----------VMTSS-----SSPGISLKQEGISYLAGAELP------CVIVNIMRG-GPGLGN-- 114 (352)
T ss_pred HHHHHHHHHhhCCC-----------EEeec-----CcchHHHHHHHHHHHHHccCC------EEEEEeccC-CCCCCC--
Confidence 34567777776332 33332 678875 5898888 999 777777644 332211
Q ss_pred CcCcccHHHHHhh-c-----CccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 444 GRSSQYCTDVAKA-L-----DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 444 ~rss~~~~d~Aka-~-----giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
+...-.|+--+ + +.|.+..+..|+++++.-+..|.+.+.+.+-||++-..+| .+|+
T Consensus 115 --t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~ 176 (352)
T PRK07119 115 --IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM 176 (352)
T ss_pred --CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence 11223344222 1 4566667788999999999999999999999999999985 3665
No 180
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=72.85 E-value=9.7 Score=41.26 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=54.3
Q ss_pred cCCcchHH--HHHHhc---CCCCCCcccEEEEEEeCCcc---cccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHH
Q 002419 403 FAGQGVVY--ETLHLS---ALPNYSIGGTIHIVVNNQVA---FTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAH 474 (925)
Q Consensus 403 ~sGqG~v~--EalnlA---~LP~y~~GGvI~vV~NNq~g---~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~ 474 (925)
++|+|..+ |.|-++ ++| +|+++.|-... .+|.. .-.|+-.+.+.+.+.+...|+.+++.
T Consensus 66 ts~~Gl~lm~e~l~~a~~~~~P------~V~~~~~R~g~~~g~~~~~-------~q~D~~~~~d~~~~vl~p~~~QEa~d 132 (230)
T PF01855_consen 66 TSGPGLNLMAEPLYWAAGTELP------IVIVVVQRAGPSPGLSTQP-------EQDDLMAARDSGWIVLAPSSPQEAYD 132 (230)
T ss_dssp EECCHHHHHCCCHHHHHHTT--------EEEEEEEB---SSSB--SB--------SHHHHHTTTSS-EEEE--SHHHHHH
T ss_pred ecCCcccccHhHHHHHHHcCCC------EEEEEEECCCCCCCCcCcC-------ChhHHHHHHhcCeEEEeCCCHHHHHH
Confidence 35677654 666666 999 77777765432 22322 22333333344444556679999999
Q ss_pred HHHHHHHHHHccCCcEEEEEEEeecCCCCC
Q 002419 475 VCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (925)
Q Consensus 475 a~~~A~e~rr~~~~PvlIe~~tYR~~GHne 504 (925)
.+..|.+.+.++..||++-..+|+. .|..
T Consensus 133 ~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 133 MTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp HHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred HHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 9999999999999999999999886 2543
No 181
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=72.23 E-value=9.4 Score=44.32 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=73.3
Q ss_pred ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHH--HHHHhc---CCCCCCcccEEEEEEeCC---cccccC
Q 002419 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVY--ETLHLS---ALPNYSIGGTIHIVVNNQ---VAFTTD 440 (925)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~--EalnlA---~LP~y~~GGvI~vV~NNq---~g~tT~ 440 (925)
.+.+|+|+++|=.. +++ ++||+|..+ |.+.++ .+| +|.++.+-. .|+-|.
T Consensus 59 A~~~a~GAs~aG~R-----------a~t-----aTSg~G~~lm~E~~~~a~~~e~P------~V~~~~~R~GpstG~p~~ 116 (375)
T PRK09627 59 GISVALGASMSGVK-----------SMT-----ASSGPGISLKAEQIGLGFIAEIP------LVIVNVMRGGPSTGLPTR 116 (375)
T ss_pred HHHHHHHHHhhCCC-----------EEe-----ecCCchHHHHhhHHHHHHhccCC------EEEEEeccCCCcCCCCCc
Confidence 34567777776332 222 457888876 888888 999 777666543 344443
Q ss_pred CCCCcCcccHHHHHhhc-CccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCC
Q 002419 441 PMSGRSSQYCTDVAKAL-DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI 505 (925)
Q Consensus 441 ~~~~rss~~~~d~Aka~-giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~ 505 (925)
... +-. ...+...+ +.|.+...-.|+++++..+..|++.+.+++-||+|-..+ + -+|+..
T Consensus 117 ~~q--~D~-~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~~ 177 (375)
T PRK09627 117 VAQ--GDV-NQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-T-VGHMYG 177 (375)
T ss_pred cch--HHH-HHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-H-HhCCee
Confidence 311 001 11122222 356677788999999999999999999999999999988 3 377643
No 182
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=68.53 E-value=16 Score=48.11 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=70.5
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-cccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTT 439 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT 439 (925)
..++|+.....+|.+.+.+. .-+|.++|||.|.--|..- -.|.- +.+ ++++|-.|.. ++|.
T Consensus 494 ~~~MGgeg~~~~G~a~f~~~---------~hv~aniGDgTffHSG~~a-lr~AV~~~~n------it~kIL~N~avAMTG 557 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFSRR---------RHVFQNLGDGTYFHSGLLA-IRQAIAAGVN------ITYKILYNDAVAMTG 557 (1186)
T ss_pred eeccCcchhhheeecccCCC---------CCEEEEeccccchhcCHHH-HHHHHhcCCC------EEEEEEeCcchhccC
Confidence 46788888888898877321 2399999999997556543 23322 777 7777777775 8876
Q ss_pred C-CCCC-cCcccHHHHHhhcCccEEEEeCCCHHHH-----------------HHHHHHHHHHHHccCCcEEEEE
Q 002419 440 D-PMSG-RSSQYCTDVAKALDAPIFHVNGDDMEAV-----------------AHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 440 ~-~~~~-rss~~~~d~Aka~giP~~~VdG~D~eAV-----------------~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
- +... -+.+.++...++.|+.-+.|=-+||+.. ..++++++ |+..|+.+|-.
T Consensus 558 gQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~l---r~~~GvsViI~ 628 (1186)
T PRK13029 558 GQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQREL---REVPGVSVLIY 628 (1186)
T ss_pred CCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 2 2222 2223444477999997776643455433 34444444 25677777643
No 183
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=68.05 E-value=13 Score=38.11 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=54.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEE-eCCC--
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDD-- 468 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~D-- 468 (925)
.++++..|=|++++-.-++|+.. .+.| +|+|+-+-..... .....-..+...+.+.+---..+| +..+
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~-~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~ 132 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYY-SGVP------LLVLTADRPPELR--GTGANQTIDQVGLFGDYVRWSVDLPPPEDDD 132 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHh-cCCC------EEEEECCCCHHhc--CCCCCcccchhhhccceeeEEEecCCcccch
Confidence 56677778888876555555542 3899 9988864332211 111111123333444443344455 3333
Q ss_pred -HHHHHHHHHHHHHHHHccC-CcEEEEE
Q 002419 469 -MEAVAHVCELAAEWRQTFH-SDVVVDL 494 (925)
Q Consensus 469 -~eAV~~a~~~A~e~rr~~~-~PvlIe~ 494 (925)
.+.+.++++.|+..++.+. |||+|++
T Consensus 133 ~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 133 DLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 3336777777887777775 8999987
No 184
>PRK08611 pyruvate oxidase; Provisional
Probab=67.48 E-value=22 Score=43.45 Aligned_cols=93 Identities=9% Similarity=0.083 Sum_probs=60.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..+.||. ..+.| +|+|+-.-....... ...-..+..++.+.+---...|+ +++.
T Consensus 70 gv~~~t~GPG~~N~l~gla~A~-~~~~P------vl~ItG~~~~~~~~~--~~~q~~d~~~l~~~itk~~~~v~--~~~~ 138 (576)
T PRK08611 70 GVCLSIGGPGAIHLLNGLYDAK-MDHVP------VLALAGQVTSDLLGT--DFFQEVNLEKMFEDVAVYNHQIM--SAEN 138 (576)
T ss_pred eEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCcccccCC--CCccccCHHHHhhcccceeEEeC--CHHH
Confidence 5677777999888544444443 33999 999986544321111 11111244455555544444554 8888
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+..++..|+..+...+|||+|++=
T Consensus 139 ~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 139 LPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeC
Confidence 999999999888888899999983
No 185
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=67.18 E-value=27 Score=42.77 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=60.8
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-+-+++|. ..++| +|+|+-.=.. ...........+..++++.+---..+| .+++.
T Consensus 70 gv~~~t~GPG~~n~~~gi~~A~-~~~~P------vl~I~g~~~~--~~~~~~~~q~~d~~~l~~~~tk~~~~i--~~~~~ 138 (588)
T PRK07525 70 GMVIGQNGPGITNFVTAVATAY-WAHTP------VVLVTPQAGT--KTIGQGGFQEAEQMPMFEDMTKYQEEV--RDPSR 138 (588)
T ss_pred EEEEEcCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCc--ccCCCCCCcccchhhhhhhheeEEEEC--CCHHH
Confidence 6777777999998666666665 33999 9999821111 000011111123445555554455555 47889
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+..+++.|+..++..+|||.|++-
T Consensus 139 ~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 139 MAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 999999999999888999999984
No 186
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=66.90 E-value=23 Score=43.62 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=61.6
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++|| ...++| +|+|+-.-... .......-..+..++++.+---..+|+ +++.
T Consensus 96 gv~~~t~GPG~~N~l~gl~~A-~~~~~P------llvI~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~ 164 (612)
T PRK07789 96 GVCMATSGPGATNLVTPIADA-NMDSVP------VVAITGQVGRG--LIGTDAFQEADIVGITMPITKHNFLVT--DADD 164 (612)
T ss_pred EEEEECCCccHHHHHHHHHHH-hhcCCC------EEEEecCCCcc--ccCCCcCcccchhhhhhcceeEEEEcC--CHHH
Confidence 677777799998866666666 344999 99988532211 111111112244555655555555664 8999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..++.+. |||+|++-
T Consensus 165 i~~~l~~A~~~A~~~~~GPV~l~iP 189 (612)
T PRK07789 165 IPRVIAEAFHIASTGRPGPVLVDIP 189 (612)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEc
Confidence 9999999999888874 89999984
No 187
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=66.80 E-value=92 Score=32.77 Aligned_cols=146 Identities=19% Similarity=0.254 Sum_probs=69.0
Q ss_pred CCcEEEecccCC---C--cccccccceeeecCCCceec-cCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcc
Q 002419 653 GNHVRLSGQDVE---R--GTFSHRHSVLHDQETGEQYC-PLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSL 726 (925)
Q Consensus 653 ~~~v~l~GqDv~---r--GtF~~RHav~~dq~t~~~y~-pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~l 726 (925)
..+.||+|-|=- | .+|.+ |++.|. +...=..+........+.+.|||..+-|+--||.+.|-..|
T Consensus 16 ~~nfRvf~PDEt~SNrL~~v~e~---------t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~LtGrhgl 86 (179)
T PF03894_consen 16 PRNFRVFGPDETASNRLNAVFEV---------TNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLTGRHGL 86 (179)
T ss_dssp TTTEEEEESS-TTTTT-GGGGGT-----------EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHTT-EEE
T ss_pred CCcceeECCCcchhhchHHHHHh---------cccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhcCCccc
Confidence 458999999943 2 66665 444321 10000000111234566799999999999999999998876
Q ss_pred e-eechhhhhhHhhHHHHHHHHH---H-hhhhhhCCc-CCcEEEc-CccCC--CCCccCCCch-hhhhhhccCCCCCccc
Q 002419 727 V-MWEAQFGDFANGAQVIFDQFV---N-SGESKWLRQ-SGLVVML-PHGYD--GQGPEHSSAR-LERFLQMSDDNPYVIP 796 (925)
Q Consensus 727 v-iwEaqFgDF~~~aq~~idq~i---~-~~~~kw~~~-~~lv~~l-PhG~~--G~GpeHSs~R-~ErfLql~~~~~~~~~ 796 (925)
. -.|| |+-.---++.|++ . +.+..|... .+|.+++ -|.++ --|-.|-.-- ++-+|...
T Consensus 87 f~sYEA----F~~ivdsM~~Qh~Kwl~~~~~~~wR~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~-------- 154 (179)
T PF03894_consen 87 FASYEA----FAHIVDSMLNQHAKWLRHARELPWRAPIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKK-------- 154 (179)
T ss_dssp EEEEGG----GGGGGHHHHHHHHHHHHHHHH-TTS---B-EEEEEES-CCG-TTT-GGG---THHHHHHCC---------
T ss_pred ccccch----hHHHHHHHHHHHHHHHHHHHhCcCCCCCcceeEEeeccceecCCCCcccCCChHHHHHHhcC--------
Confidence 4 4454 5543334445543 2 246667664 4555554 56663 2344443331 22222211
Q ss_pred CCCCchhccccccCeEEEEcCChhHHHHHHHHHH
Q 002419 797 EMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQI 830 (925)
Q Consensus 797 ~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~ 830 (925)
...++|..|..+--.-..+..++
T Consensus 155 -----------~~~~RvylPpDANtlLav~~~cl 177 (179)
T PF03894_consen 155 -----------PDVVRVYLPPDANTLLAVMDHCL 177 (179)
T ss_dssp ------------T-EEEEE-SSHHHHHHHHHHHH
T ss_pred -----------cccceeecCCcHhHHHHHHHHHh
Confidence 12588999876655554444444
No 188
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=65.43 E-value=18 Score=41.85 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=75.2
Q ss_pred cchHHHHHHHhhhcCC-CCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCCC--CccCCC-ch
Q 002419 706 LSEFGVLGFELGYSME-NPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQ--GPEHSS-AR 780 (925)
Q Consensus 706 LSE~ailG~~~G~s~~-g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G~--GpeHSs-~R 780 (925)
-.|..-+|.+.||.|. |.+|+| =+|-.-+-|. -|-+.|-......+-|+++++-+ |..|. -|||.- .|
T Consensus 33 ~~E~~av~iaaG~~latG~~~~v--~mQnSGlGn~-----vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~ 105 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLATGKRAAV--YMQNSGLGNA-----VNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGR 105 (361)
T ss_pred CCchHHHHHHHHHHHhcCCccEE--EEecCchhhh-----hhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhH
Confidence 3588899999999999 999999 5676666551 23344443345567888888654 44332 378864 32
Q ss_pred -hhhhhhccCCCCCcccCCCCchhccccccCeEEEE-cCChhHHHHHHHHHHhc--cCCCcEEEEeccccc
Q 002419 781 -LERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVN-VTTPANYFHVLRRQIHR--EFRKPLVVMSPKNLL 847 (925)
Q Consensus 781 -~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~-pstpa~~~hlLr~q~~~--~~~~Pli~~~pK~Ll 847 (925)
.+..|..++ +.... |.++++....+.+++.. .-.+|+.++-+|..+
T Consensus 106 ~t~~lL~~~~---------------------i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 106 ITLSLLDALE---------------------IPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred HHHHHHHHcC---------------------CCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 466665333 33333 46677777666666542 348999999999887
No 189
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=65.36 E-value=21 Score=43.61 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=70.4
Q ss_pred ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcch--HHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCC
Q 002419 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV--VYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS 443 (925)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~--v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~ 443 (925)
.+.+|+|+++|=.. .++ +++|+|. -+|.|.+| .+| +|.++.+- -|-+|...-
T Consensus 249 A~~~a~GAs~aG~R---------a~t-------aTSg~Gl~lm~E~l~~a~~~~~P------~Vi~~~~R-~gpstg~~t 305 (562)
T TIGR03710 249 AINMAIGASYAGAR---------AMT-------ATSGPGFALMTEALGLAGMTETP------LVIVDVQR-GGPSTGLPT 305 (562)
T ss_pred HHHHHHhHHhcCCc---------eee-------cCCCCChhHhHHHHhHHHhccCC------EEEEEccc-CCCCCCCCC
Confidence 34567777776332 222 3466776 45899888 899 66666654 444442110
Q ss_pred CcCcccHHHHHhhc-----CccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 444 GRSSQYCTDVAKAL-----DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 444 ~rss~~~~d~Aka~-----giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
+. .-.|+-.+. +.|.+.+...|+.+++..+..|.+.+.++.-||++-..+|. +|+
T Consensus 306 -~~--eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l--~~~ 365 (562)
T TIGR03710 306 -KT--EQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL--ANS 365 (562)
T ss_pred -Cc--cHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH--hCC
Confidence 11 112221222 35666667889999999999999999999999999999985 554
No 190
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=64.95 E-value=26 Score=42.74 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=58.6
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-+-+++|. ..+.| +|+|.-. .+.........-..+..++.+.+---..+| .+++.
T Consensus 66 gv~~~t~GPG~~N~~~gla~A~-~~~~P------vl~I~g~--~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v--~~~~~ 134 (579)
T TIGR03457 66 SMVIGQNGPGVTNCVTAIAAAY-WAHTP------VVIVTPE--AGTKTIGLGGFQEADQLPMFQEFTKYQGHV--RHPSR 134 (579)
T ss_pred EEEEECCCchHHHHHHHHHHHh-hcCCC------EEEEeCC--CccccCCCCCCcccchhhhhhcceeEEEec--CCHHH
Confidence 5677777999988555555543 33999 8888631 111110111111124445555554445555 48888
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+..+++.|+..+..++|||+|++-
T Consensus 135 ~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 135 MAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 889999999888888899999984
No 191
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=64.30 E-value=31 Score=42.11 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=62.8
Q ss_pred CcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHH
Q 002419 391 KNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDME 470 (925)
Q Consensus 391 ~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~e 470 (925)
..|+++..|=|+++.=.-++. ..+...| +|.|.= |..-+.-..+..-..+...+.+.+=--.+.|. +++
T Consensus 65 pgV~~~tsGPGatN~~tgla~-A~~d~~P------ll~itG--qv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~--~~~ 133 (550)
T COG0028 65 PGVCLVTSGPGATNLLTGLAD-AYMDSVP------LLAITG--QVPTSLIGTDAFQEVDQVGLFRPITKYNFEVR--SPE 133 (550)
T ss_pred CEEEEECCCCcHHHHHHHHHH-HHhcCCC------EEEEeC--CccccccCcchhhhcchhhHhhhhheeEEEeC--CHH
Confidence 478999999999983333332 2344899 777653 32222222222223355556666655666676 889
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 471 AVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 471 AV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.+-+++++|++.+..++ |||+|++=
T Consensus 134 ~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 134 DIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 99999999999999988 99999983
No 192
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=63.26 E-value=35 Score=40.13 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=68.9
Q ss_pred ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHH--HHHHhc---CCCCCCcccEEEEEEeCCcccccCCCC
Q 002419 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVY--ETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS 443 (925)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~--EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~ 443 (925)
.+.+|+|+++|=.. +++ +++|+|..+ |.|-++ .+| +|+++.+-..+-+.+.
T Consensus 68 A~~~~~GAs~aGaR-----------a~T-----aTS~~Gl~lm~E~l~~aa~~~~P------~V~~~~~R~~~~~~~i-- 123 (407)
T PRK09622 68 AMSACVGAAAAGGR-----------VAT-----ATSSQGLALMVEVLYQASGMRLP------IVLNLVNRALAAPLNV-- 123 (407)
T ss_pred HHHHHHHHHhhCcC-----------EEe-----ecCcchHHHHhhHHHHHHHhhCC------EEEEEeccccCCCcCC--
Confidence 34567777776332 222 346788764 888888 999 8888887775321111
Q ss_pred CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHcc--CCcEEEEEEEeec
Q 002419 444 GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTF--HSDVVVDLVCYRR 499 (925)
Q Consensus 444 ~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~--~~PvlIe~~tYR~ 499 (925)
..+-.|.-.+-+...+.....|+.+++..+..|.+.+.+. .-||++-..+|+.
T Consensus 124 ---~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~ 178 (407)
T PRK09622 124 ---NGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC 178 (407)
T ss_pred ---CchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh
Confidence 1122233222233344457779999999999999999888 8999999888763
No 193
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=61.85 E-value=33 Score=42.25 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=58.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+++|. +.+.| +|+|+-+-. .+....+..-..+...+++.+---..+|+ ++++
T Consensus 87 gv~~~t~GPG~~n~l~gl~~A~-~d~~P------vl~i~G~~~--~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~--~~~~ 155 (616)
T PRK07418 87 GVCFGTSGPGATNLVTGIATAQ-MDSVP------MVVITGQVP--RPAIGTDAFQETDIFGITLPIVKHSYVVR--DPSD 155 (616)
T ss_pred eEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecCCC--ccccCCCCcccccHHHHhhhcceeEEEeC--CHHH
Confidence 5667777888888544444443 33999 998875321 11111111112234445554433344454 8899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..+...+ |||+|++=
T Consensus 156 i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 156 MARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecc
Confidence 9999999999998887 99999974
No 194
>PRK11269 glyoxylate carboligase; Provisional
Probab=59.70 E-value=29 Score=42.48 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=60.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=+-++||. ..+.| +|+|+-.-...... ....-..+..++++.+---.++| .+++.
T Consensus 70 gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~~~~--~~~~q~~d~~~l~~~itk~s~~v--~~~~~ 138 (591)
T PRK11269 70 GVCIGTSGPAGTDMITGLYSAS-ADSIP------ILCITGQAPRARLH--KEDFQAVDIESIAKPVTKWAVTV--REPAL 138 (591)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCcccccChhhHhhcceeEEEEc--CCHHH
Confidence 5667777888887444444443 23999 99997643322111 11111224445566554455556 58899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|++.++.+. |||.|++-
T Consensus 139 ~~~~i~~A~~~A~~~~~GPV~l~iP 163 (591)
T PRK11269 139 VPRVFQQAFHLMRSGRPGPVLIDLP 163 (591)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 9999999999998875 89999985
No 195
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=59.69 E-value=37 Score=44.95 Aligned_cols=104 Identities=13% Similarity=-0.030 Sum_probs=59.4
Q ss_pred cCeEEEEcCChhHHHHHHHHHH--hccCCCcEEEEecccccCCCCCCCCcccccccCCCC-CCC-CCCCcee-Eeec---
Q 002419 809 CNWQIVNVTTPANYFHVLRRQI--HREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHP-GFD-KQGTRFK-RLIK--- 880 (925)
Q Consensus 809 ~Nl~Vv~pstpa~~~hlLr~q~--~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~-~~~-~~~~~F~-~vi~--- 880 (925)
.+|-|..|+++.+++.+.+-+. .+.+.-||++=.-..+-.... ...+++.......| .|. .|||... ++..
T Consensus 176 a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~-~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p~~ 254 (1186)
T PRK13029 176 WGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTA-SVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDPLA 254 (1186)
T ss_pred cCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecce-eeecCCcccccCCcccccCCccccccccCCCcHH
Confidence 4588999999999999888764 577899999866555543332 22222221000012 122 2334322 2220
Q ss_pred -------------------CCCCCC-CCCCCccEEEEecchHHHHHHHHHHHh
Q 002419 881 -------------------DQNEHS-DLEEGIRRLILCSGKVSSAVCVALYFF 913 (925)
Q Consensus 881 -------------------d~~~~~-~~~~~v~rvilcsGkvyydL~~~~~~~ 913 (925)
.+-+.. .+..+-+.-|+||||.|.|+.+++..+
T Consensus 255 ~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l 307 (1186)
T PRK13029 255 QEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL 307 (1186)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc
Confidence 000000 011124567999999999999999875
No 196
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=59.16 E-value=38 Score=41.08 Aligned_cols=93 Identities=11% Similarity=-0.027 Sum_probs=57.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++||. ..+.| +|+|+-.-.... ......-..+..++++.+---... -.+++.
T Consensus 66 gv~~~t~GPG~~N~l~~l~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~~~~--v~~~~~ 134 (549)
T PRK06457 66 SACMGTSGPGSIHLLNGLYDAK-MDHAP------VIALTGQVESDM--IGHDYFQEVNLTKLFDDVAVFNQI--LINPEN 134 (549)
T ss_pred eEEEeCCCCchhhhHHHHHHHH-hcCCC------EEEEecCCCccc--cCCCcccccchhhhhccceeEEEE--eCCHHH
Confidence 5677777899988555555543 33999 999986432110 001111112333344433233333 457888
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+..+++.|+..+....|||+|++=
T Consensus 135 ~~~~i~~A~~~a~~~~GPV~l~iP 158 (549)
T PRK06457 135 AEYIIRRAIREAISKRGVAHINLP 158 (549)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 888899999888888899999985
No 197
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=59.07 E-value=37 Score=45.17 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=70.7
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhh-CCcCCcEEEcCc-cCCCC----CccCCC
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKW-LRQSGLVVMLPH-GYDGQ----GPEHSS 778 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw-~~~~~lv~~lPh-G~~G~----GpeHSs 778 (925)
.=||.+.+|..+|++.+|-+..+ |.. +|-.. +..-.-+++ +...|+||-... ++.+. .+.||.
T Consensus 57 ~EsE~~A~~av~GA~~aGara~T--------~TS-s~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~i~~dh~D 125 (1165)
T TIGR02176 57 MQSEAGAAGAVHGALQTGALTTT--------FTA-SQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHALSIFGDHQD 125 (1165)
T ss_pred ccchHHHHHHHHhHhhcCCCEEE--------ecC-hhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCCCccCCCchH
Confidence 34899999999999999988877 222 22111 110111122 235799998764 33221 355665
Q ss_pred chhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCC
Q 002419 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRH 849 (925)
Q Consensus 779 ~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~ 849 (925)
. .+.++.++.|+.|+|+.+++++-..+.. ..++.|+|+|..-..+.|
T Consensus 126 v------------------------~~~R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh 174 (1165)
T TIGR02176 126 V------------------------MAARQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSH 174 (1165)
T ss_pred H------------------------HHhhcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceecc
Confidence 4 1223457999999999999998777644 457999999988654433
No 198
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=58.56 E-value=39 Score=39.14 Aligned_cols=86 Identities=23% Similarity=0.302 Sum_probs=63.1
Q ss_pred cCCcch--HHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHH--HhhcCccEEEEeCCCHHHHHHH
Q 002419 403 FAGQGV--VYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDV--AKALDAPIFHVNGDDMEAVAHV 475 (925)
Q Consensus 403 ~sGqG~--v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~--Aka~giP~~~VdG~D~eAV~~a 475 (925)
++|||. .+|.|-+| .+| +|+++.+....-+-.+-.. +-.|+ ++--|+|.+... |+++++.-
T Consensus 77 TSg~Gl~Lm~E~l~~a~~~~~P------~Vi~~~~R~~ps~g~p~~~----dq~D~~~~r~~g~~~~~~~--s~qEa~d~ 144 (365)
T COG0674 77 TSGQGLLLMAEALGLAAGTETP------LVIVVAQRPLPSTGLPIKG----DQSDLMAARDTGFPILVSA--SVQEAFDL 144 (365)
T ss_pred cCCccHHHHHHHHHHHHhccCC------eEEEEeccCcCCCcccccc----cHHHHHHHHccCceEEeec--cHHHHHHH
Confidence 456775 56888888 999 8877777776554432221 22333 222388988877 99999999
Q ss_pred HHHHHHHHHccCCcEEEEEEEeecC
Q 002419 476 CELAAEWRQTFHSDVVVDLVCYRRF 500 (925)
Q Consensus 476 ~~~A~e~rr~~~~PvlIe~~tYR~~ 500 (925)
+-.|...+.+..-||++-...|+..
T Consensus 145 t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 145 TLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred HHHHHHHHHHhcCCEEEeeccchhc
Confidence 9999999999999999999888754
No 199
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=58.20 E-value=30 Score=42.49 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=56.3
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcC-ccEEEEeCCCHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALD-APIFHVNGDDME 470 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~g-iP~~~VdG~D~e 470 (925)
.++++..|=|+++.=.-+++|. ..+.| +|+|+-. ...........-..+..++.+.+- --...|+ +++
T Consensus 69 gv~~~t~GPG~~n~~~gi~~A~-~d~vP------vl~I~G~--~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~--~~~ 137 (597)
T PRK08273 69 GVCLATSGPGAIHLLNGLYDAK-LDHVP------VVAIVGQ--QARAALGGHYQQEVDLQSLFKDVAGAFVQMVT--VPE 137 (597)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecC--CchhhcCCCCCCccCHHHHHHHHHHHHeeEeC--CHH
Confidence 5666777888888444444433 33999 8988732 111111111111123444555443 3445555 788
Q ss_pred HHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 471 AVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 471 AV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
.+..++..|+..+...+|||.|++-
T Consensus 138 ~~~~~l~~A~~~A~~~~gPV~i~iP 162 (597)
T PRK08273 138 QLRHLVDRAVRTALAERTVTAVILP 162 (597)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 8888888888888888899999875
No 200
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=57.95 E-value=1.1e+02 Score=30.36 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=65.8
Q ss_pred ceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCCCCCccC
Q 002419 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYDGQGPEH 776 (925)
Q Consensus 698 ~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G~GpeH 776 (925)
..+++.+- .|.+..+.+-||+..+-+ ++ +=.+ |.=+. ..+....+. +...+||+++... +..+.+-.|
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~-v~-~~~~-gpG~~---n~~~~l~~a----~~~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGAR-AM-TATS-GPGLN---LMAEALYLA----AGAELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCc-EE-EeeC-cchHH---HHHHHHHHH----HhCCCCEEEEEeeCCCCCCCCCC
Confidence 46777777 999999999999998877 33 3333 33222 222333322 2245899998743 111111001
Q ss_pred CCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhc--cCCCcEEEEe
Q 002419 777 SSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHR--EFRKPLVVMS 842 (925)
Q Consensus 777 Ss~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~--~~~~Pli~~~ 842 (925)
.. .+.+-|... +.. -..+..+++|++...+++++++. ..+.|++++.
T Consensus 110 ~~--~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PD--QSDLMAARY-----GGH------------PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cC--cHHHHHHHh-----CCC------------CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 10 111111100 101 16677789999999999998873 3457998874
No 201
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=57.75 E-value=45 Score=40.63 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=62.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+++|. ..+.| +|+|+-.-... .......-..+...+.+.+---...|+ ++++
T Consensus 69 gv~~~t~GPG~~n~l~gi~~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~ 137 (574)
T PRK07979 69 GVVLVTSGPGATNAITGIATAY-MDSIP------LVVLSGQVATS--LIGYDAFQECDMVGISRPVVKHSFLVK--QTED 137 (574)
T ss_pred eEEEECCCccHhhhHHHHHHHh-hcCCC------EEEEECCCChh--ccCCCCCceecHHHHhhcccceEEEeC--CHHH
Confidence 6777777999888555455443 23999 89887532211 111111112344556666666666775 8999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||+|++-
T Consensus 138 ~~~~l~~A~~~A~~~~~GPv~l~iP 162 (574)
T PRK07979 138 IPQVLKKAFWLAASGRPGPVVVDLP 162 (574)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcC
Confidence 9999999999988885 99999984
No 202
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=57.69 E-value=32 Score=41.81 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=59.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++||. ..+.| +|+|.-.-..... .....-..+..++++.+---..+|+ +++.
T Consensus 78 gv~~~t~GpG~~N~l~gl~~A~-~~~~P------vl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 146 (564)
T PRK08155 78 AVCMACSGPGATNLVTAIADAR-LDSIP------LVCITGQVPASMI--GTDAFQEVDTYGISIPITKHNYLVR--DIEE 146 (564)
T ss_pred eEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEeccCCcccc--cCCCccccchhhhhhccceEEEEcC--CHHH
Confidence 5666677999888555555533 44999 9998743221100 0111111233444554444555664 8999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+...+..|+..++.++ |||.|++-
T Consensus 147 ~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 147 LPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999988874 99999994
No 203
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=57.48 E-value=37 Score=41.37 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=58.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++--.-++||. ..++| +|+|+-.-... .......-..+..++++.+---...|+ +++.
T Consensus 76 gv~~~t~GpG~~N~~~gl~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~ 144 (578)
T PRK06112 76 AVVTAQNGPAATLLVAPLAEAL-KASVP------IVALVQDVNRD--QTDRNAFQELDHIALFQSCTKWVRRVT--VAER 144 (578)
T ss_pred EEEEeCCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCccc--cCCCCCccccChhhhhccccceEEEeC--CHHH
Confidence 5666677777766444444432 23999 99987431111 011111112344556666655555664 7889
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+...+..|+..++.+. |||.|++-
T Consensus 145 ~~~~i~~A~~~A~~~~~GPv~l~iP 169 (578)
T PRK06112 145 IDDYVDQAFTAATSGRPGPVVLLLP 169 (578)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 9999999998888875 89999985
No 204
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=56.08 E-value=40 Score=40.87 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=60.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=.-+++|. ..++| +|+|+-......-..........+...+++.+---..+|+ ++++
T Consensus 67 gv~~~t~GPG~~N~~~gia~A~-~~~~P------vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~ 137 (554)
T TIGR03254 67 GVCLTVSAPGFLNGLTALANAT-TNCFP------MIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAED 137 (554)
T ss_pred EEEEEccCccHHhHHHHHHHHH-hcCCC------EEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHH
Confidence 5677777999888444444332 23999 9999865432210000111112244556666666677777 7889
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+.+++..|++.+..++ |||.|++-
T Consensus 138 ~~~~i~rA~~~A~~~~pGPV~l~iP 162 (554)
T TIGR03254 138 IGIGIARAIRTAVSGRPGGVYLDLP 162 (554)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 8889999998888764 89999984
No 205
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=55.52 E-value=42 Score=41.20 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=60.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-+-+++|. ..+.| +|+|.-.-..... .....-..+...+++.+---..+| ++++.
T Consensus 76 gv~~~t~GPG~~N~l~gia~A~-~~~~P------vl~i~G~~~~~~~--~~~~~q~~d~~~l~~~vtk~~~~v--~~~~~ 144 (595)
T PRK09107 76 GVVLVTSGPGATNAVTPLQDAL-MDSIP------LVCITGQVPTHLI--GSDAFQECDTVGITRPCTKHNWLV--KDVND 144 (595)
T ss_pred EEEEECCCccHhHHHHHHHHHh-hcCCC------EEEEEcCCChhhc--CCCCCcccchhhhhhhheEEEEEe--CCHHH
Confidence 6777777999998666666665 34999 8888753332110 111111123344455444445555 48899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|++.++.+. |||.|++-
T Consensus 145 i~~~l~~A~~~A~s~~~GPV~l~iP 169 (595)
T PRK09107 145 LARVIHEAFHVATSGRPGPVVVDIP 169 (595)
T ss_pred HHHHHHHHHHHhcCCCCceEEEecC
Confidence 9999999999999885 89999884
No 206
>PRK07064 hypothetical protein; Provisional
Probab=55.14 E-value=44 Score=40.33 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=60.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCc-ccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQV-AFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDME 470 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~-g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~e 470 (925)
.++++..|=|+++.-..++||. ..+.| +|+|+-+=.. .+.+....-....+..++++.+=--...|+ +++
T Consensus 68 ~v~~~t~GpG~~N~~~~i~~A~-~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~~~ 138 (544)
T PRK07064 68 GVALTSTGTGAGNAAGALVEAL-TAGTP------LLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVR--SAE 138 (544)
T ss_pred eEEEeCCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCCcccccCCCcccccccCHHHHhhhhcceEEEeC--CHH
Confidence 5666777888887544455443 23999 9999864211 011000000012355666776655666774 788
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 471 AVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 471 AV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
++..+++.|+..+..+ .|||.|++-
T Consensus 139 ~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (544)
T PRK07064 139 TALATIREAVRVALTAPTGPVSVEIP 164 (544)
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEeC
Confidence 8888899999888887 699999984
No 207
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.92 E-value=48 Score=40.53 Aligned_cols=93 Identities=11% Similarity=0.148 Sum_probs=62.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..+++|. ..+.| +|+|+-.-... .......-..+..++++.+---..+|+ +++.
T Consensus 79 gv~~~t~GpG~~N~~~gla~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~ 147 (570)
T PRK06725 79 GVVFATSGPGATNLVTGLADAY-MDSIP------LVVITGQVATP--LIGKDGFQEADVVGITVPVTKHNYQVR--DVNQ 147 (570)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCcC------EEEEecCCCcc--cccCCCCcccchhhhhhccceeEEEcC--CHHH
Confidence 5777778999888555555543 23999 99987532211 111111112344556666666666775 7899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||.|++-
T Consensus 148 i~~~l~~A~~~A~s~~~GPV~l~iP 172 (570)
T PRK06725 148 LSRIVQEAFYIAESGRPGPVLIDIP 172 (570)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEccc
Confidence 9999999999998885 89999984
No 208
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.38 E-value=52 Score=40.14 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=61.4
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..+++|. ..+.| +|+|+-.-.... ......-..+..++++.+---..+|+ +++.
T Consensus 69 gv~~vt~GPG~~N~l~gl~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v~--~~~~ 137 (574)
T PRK06466 69 GVVLVTSGPGATNAITGIATAY-MDSIP------MVVLSGQVPSTL--IGEDAFQETDMVGISRPIVKHSFMVK--HASE 137 (574)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEecCCCccc--cCCCcccccchhhhhhccceeEEEcC--CHHH
Confidence 6777777899988555555554 33999 999975333211 00111111244455665555566666 7899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||.|++=
T Consensus 138 ~~~~~~rA~~~A~~~~~GPV~l~iP 162 (574)
T PRK06466 138 IPEIIKKAFYIAQSGRPGPVVVDIP 162 (574)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999888885 99999984
No 209
>PRK12474 hypothetical protein; Provisional
Probab=54.08 E-value=47 Score=39.98 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=59.3
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|++++-.-+++|. ..+.| +|+|+-.....-.. ....-..+...+++.+---...| .+++.
T Consensus 70 gv~~~t~GpG~~N~~~gl~~A~-~d~~P------vl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk~~~~v--~~~~~ 138 (518)
T PRK12474 70 AVTLLHLGPGLANGLANLHNAR-RAASP------IVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSRWVHRS--ASAGA 138 (518)
T ss_pred EEEEEccchhHhHhHHHHHHHh-hcCCC------EEEEeccCchhhcC--CCCccccCHHHhhhcccceeeec--CCHHH
Confidence 5677777999888544444443 23999 99998643321110 01111124455555444344444 58899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+.++++.|+..+.++. |||+|++=
T Consensus 139 ~~~~i~rA~~~A~~~~~GPV~l~iP 163 (518)
T PRK12474 139 VDSDVARAVQAAQSAPGGIATLIMP 163 (518)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEec
Confidence 9999999998888876 89999984
No 210
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=53.94 E-value=44 Score=40.67 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=58.7
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=..++||. ..+.| +|+|.-.-.... ......-..+..++++.+---...| +++++
T Consensus 70 gv~~~t~GpG~~N~l~gi~~A~-~~~~P------vl~i~G~~~~~~--~~~~~~q~~d~~~i~~~~tk~~~~v--~~~~~ 138 (572)
T PRK06456 70 GVCTATSGPGTTNLVTGLITAY-WDSSP------VIAITGQVPRSV--MGKMAFQEADAMGVFENVTKYVIGI--KRIDE 138 (572)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-hhCCC------EEEEecCCCccc--cCCCCccccchhhhhhccceeEEEe--CCHHH
Confidence 4566667999988544455443 23999 998874322111 0011111123344555555555556 58899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..++.++ |||.|++-
T Consensus 139 ~~~~l~~A~~~A~~~~~GPV~l~iP 163 (572)
T PRK06456 139 IPQWIKNAFYIATTGRPGPVVIDIP 163 (572)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecC
Confidence 9999999999898876 99999984
No 211
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=53.78 E-value=53 Score=40.17 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|.++.-..++||. ..+.| +|+|+-.-.. ........-..+..++++.+---..+|+ ++++
T Consensus 65 gv~~~t~GPG~~n~l~~i~~A~-~~~~P------vl~I~G~~~~--~~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~ 133 (586)
T PRK06276 65 GVCVATSGPGATNLVTGIATAY-ADSSP------VIALTGQVPT--KLIGNDAFQEIDALGIFMPITKHNFQIK--KPEE 133 (586)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEeCCCCc--cccCCCCCccccHhhHHhhhcceEEecC--CHHH
Confidence 6677777888888555555554 23999 9988742111 1111111111245556666666666664 7888
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..+...+ |||.|++-
T Consensus 134 i~~~i~~A~~~A~~~~~GPV~l~iP 158 (586)
T PRK06276 134 IPEIFRAAFEIAKTGRPGPVHIDLP 158 (586)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 9999999999888875 89999985
No 212
>PRK08266 hypothetical protein; Provisional
Probab=52.57 E-value=65 Score=38.88 Aligned_cols=93 Identities=5% Similarity=-0.021 Sum_probs=59.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCC--CcC-cccHHHHHhhcCccEEEEeCCC
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMS--GRS-SQYCTDVAKALDAPIFHVNGDD 468 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~--~rs-s~~~~d~Aka~giP~~~VdG~D 468 (925)
.++++..|=|+++.-.-++||. ..+.| +|+|+-.=. .+..... +.. ..+..++++.+--...+|+ +
T Consensus 70 ~v~~~t~GpG~~N~~~gi~~A~-~~~~P------vl~i~g~~~--~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~ 138 (542)
T PRK08266 70 GVCSVVPGPGVLNAGAALLTAY-GCNSP------VLCLTGQIP--SALIGKGRGHLHEMPDQLATLRSFTKWAERIE--H 138 (542)
T ss_pred eEEEECCCCcHHHHHHHHHHHH-hhCCC------EEEEecCCC--hhhccCCCCcceecccHhhHHhhhcceEEEeC--C
Confidence 5667777999988655555554 34999 998874211 1100000 001 1245566676655666665 7
Q ss_pred HHHHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 469 MEAVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 469 ~eAV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
++.+..+++.|+..++.+ .|||+|++-
T Consensus 139 ~~~~~~~l~~A~~~a~~~~~GPV~l~iP 166 (542)
T PRK08266 139 PSEAPALVAEAFQQMLSGRPRPVALEMP 166 (542)
T ss_pred HHHHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 888888888899888775 589999985
No 213
>PRK07586 hypothetical protein; Validated
Probab=52.17 E-value=58 Score=39.03 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=59.4
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|++++-+-+++|. ..+.| +|+|+-.-..... .....-..+..++++.+---..+|+ +++.
T Consensus 66 gv~~~t~GPG~~N~~~gl~~A~-~~~~P------vl~i~G~~~~~~~--~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~ 134 (514)
T PRK07586 66 AATLLHLGPGLANGLANLHNAR-RARTP------IVNIVGDHATYHR--KYDAPLTSDIEALARPVSGWVRRSE--SAAD 134 (514)
T ss_pred EEEEecccHHHHHHHHHHHHHH-hcCCC------EEEEecCCchhcc--CCCcccccchhhhhccccceeeecC--CHHH
Confidence 5677777999887555555443 23999 9988764322110 1111111244455555544444554 8899
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
+.++++.|+..++.+ .|||+|++-
T Consensus 135 ~~~~i~~A~~~a~~~~~GPV~l~iP 159 (514)
T PRK07586 135 VAADAAAAVAAARGAPGQVATLILP 159 (514)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEec
Confidence 999999999999987 599999985
No 214
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=50.65 E-value=55 Score=39.62 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=60.7
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++||. ..+.| +|+|.-.-...... ....-..+..++++.+--...+|+ +++.
T Consensus 65 gv~~~t~GpG~~n~~~~l~~A~-~~~~P------vl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 133 (548)
T PRK08978 65 GVCIATSGPGATNLITGLADAL-LDSVP------VVAITGQVSSPLIG--TDAFQEIDVLGLSLACTKHSFLVQ--SLEE 133 (548)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCCCcccchhccccCceeeEEEEC--CHHH
Confidence 6777777888888555555554 33999 99887532211000 001111234445555555566775 8999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||.|++-
T Consensus 134 ~~~~i~~A~~~A~~~~~GPV~l~iP 158 (548)
T PRK08978 134 LPEIMAEAFEIASSGRPGPVLVDIP 158 (548)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecC
Confidence 9999999999888875 99999984
No 215
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=50.17 E-value=77 Score=37.18 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=58.8
Q ss_pred cCCcchHH--HHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHH--HhhcCccEEEEeCCCHHHHHHH
Q 002419 403 FAGQGVVY--ETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDV--AKALDAPIFHVNGDDMEAVAHV 475 (925)
Q Consensus 403 ~sGqG~v~--EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~--Aka~giP~~~VdG~D~eAV~~a 475 (925)
++|||..+ |.|.++ .|| +|+++.|-..+-.++.. .+-+|. .+..|+-++ =+.|+.+++.-
T Consensus 80 TS~~Gl~lm~E~l~~aag~~lP------~V~vv~~R~~~~p~~i~-----~d~~D~~~~rd~g~~~~--~a~~~QEa~D~ 146 (394)
T PRK08367 80 TASQGLALMHEVLFIAAGMRLP------IVMAIGNRALSAPINIW-----NDWQDTISQRDTGWMQF--YAENNQEALDL 146 (394)
T ss_pred eccchHHHHhhHHHHHHHccCC------EEEEECCCCCCCCCCcC-----cchHHHHhccccCeEEE--eCCCHHHHHHH
Confidence 46788764 888887 999 78777666444221211 011121 233444444 45899999999
Q ss_pred HHHHHHHHH--ccCCcEEEEEEEeecCCCC
Q 002419 476 CELAAEWRQ--TFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 476 ~~~A~e~rr--~~~~PvlIe~~tYR~~GHn 503 (925)
+..|.+.+. +..-||++-..+||. +|.
T Consensus 147 ~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~ 175 (394)
T PRK08367 147 ILIAFKVAEDERVLLPAMVGFDAFIL-THT 175 (394)
T ss_pred HHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence 999999999 455899999999985 563
No 216
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=50.10 E-value=70 Score=38.81 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=60.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++||. ..++| +|+|+-.-.. ........-..+..++++.+-.-..+|+ ++++
T Consensus 66 gv~~~t~GpG~~n~l~~i~~A~-~~~~P------vl~i~g~~~~--~~~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 134 (558)
T TIGR00118 66 GVVLVTSGPGATNLVTGIATAY-MDSIP------MVVFTGQVPT--SLIGSDAFQEADILGITMPITKHSFQVK--SAED 134 (558)
T ss_pred EEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEecCCCc--cccCCCCCcccChhhhhcCccceeEEeC--CHHH
Confidence 6777777888887544455443 23999 9999753211 1001111112244556666666677775 7889
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..+..+. |||.|++-
T Consensus 135 ~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 135 IPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 9999999998888875 89999984
No 217
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=49.79 E-value=78 Score=33.58 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=39.5
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCC
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDD 468 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D 468 (925)
.++|++-|+|+.. + .+.+++.-..++. .++.||.|+. .....++|+..|+|++.++-.+
T Consensus 3 ki~vl~sg~gs~~-~-~ll~~~~~~~~~~----~I~~vvs~~~------------~~~~~~~a~~~gIp~~~~~~~~ 61 (200)
T PRK05647 3 RIVVLASGNGSNL-Q-AIIDACAAGQLPA----EIVAVISDRP------------DAYGLERAEAAGIPTFVLDHKD 61 (200)
T ss_pred eEEEEEcCCChhH-H-HHHHHHHcCCCCc----EEEEEEecCc------------cchHHHHHHHcCCCEEEECccc
Confidence 5889999888876 4 4555554445552 3666666654 1135778999999999976444
No 218
>PRK08322 acetolactate synthase; Reviewed
Probab=49.73 E-value=74 Score=38.41 Aligned_cols=93 Identities=12% Similarity=0.061 Sum_probs=58.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++||. ..+.| +|+|+-.=..... ........+..++.+.+---..+|+ +++.
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~-~~~~P------ll~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 133 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQ-LGGMP------MVAITGQKPIKRS--KQGSFQIVDVVAMMAPLTKWTRQIV--SPDN 133 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHh-hcCCC------EEEEecccccccc--CCCccccccHHHHhhhheeEEEEeC--CHHH
Confidence 5666677888888555555443 23999 8888753221110 1111112244445554443444554 8899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..+..++ |||+|++-
T Consensus 134 ~~~~i~~A~~~A~~~~~GPV~l~iP 158 (547)
T PRK08322 134 IPEVVREAFRLAEEERPGAVHLELP 158 (547)
T ss_pred HHHHHHHHHHHHccCCCCcEEEEcC
Confidence 9999999998888875 89999985
No 219
>PLN02470 acetolactate synthase
Probab=49.38 E-value=63 Score=39.54 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=60.6
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=.-++||. ..+.| +|+|.-.-... .......-..+..++.+.+--....|+ ++++
T Consensus 78 gv~~~t~GPG~~N~l~gia~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~ 146 (585)
T PLN02470 78 GVCIATSGPGATNLVTGLADAL-LDSVP------LVAITGQVPRR--MIGTDAFQETPIVEVTRSITKHNYLVM--DVED 146 (585)
T ss_pred EEEEECCCccHHHHHHHHHHHH-hcCCc------EEEEecCCChh--hcCCCcCcccchhhhhhhheEEEEEcC--CHHH
Confidence 6777888899888544444443 23999 99887532211 101111112234455666555566664 8999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+.++++.|+..++.++ |||.|++-
T Consensus 147 i~~~l~~A~~~A~s~~~GPV~l~iP 171 (585)
T PLN02470 147 IPRVIREAFFLASSGRPGPVLVDIP 171 (585)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEec
Confidence 9999999999998886 99999994
No 220
>PRK06154 hypothetical protein; Provisional
Probab=48.65 E-value=47 Score=40.52 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=56.8
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+++|. ..+.| +|+|+-........ .. ...+..++++.+---..+|+ +++.
T Consensus 83 gv~~~t~GPG~~N~~~gla~A~-~~~~P------vl~i~G~~~~~~~~--~~--~~~d~~~~~~~vtk~~~~v~--~~~~ 149 (565)
T PRK06154 83 GVFAVQYGPGAENAFGGVAQAY-GDSVP------VLFLPTGYPRGSTD--VA--PNFESLRNYRHITKWCEQVT--LPDE 149 (565)
T ss_pred EEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEeCCCCccccc--CC--CCcchhhhHhhcceeEEECC--CHHH
Confidence 5566667888888444444443 33999 99997543321100 00 01122344454444444554 8899
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEEEE
Q 002419 472 VAHVCELAAEWRQTF-HSDVVVDLVC 496 (925)
Q Consensus 472 V~~a~~~A~e~rr~~-~~PvlIe~~t 496 (925)
+.+++..|+..++.+ .|||+|++-.
T Consensus 150 ~~~~i~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 150 VPELMRRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecch
Confidence 999999999988886 5899999853
No 221
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=48.46 E-value=53 Score=40.26 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=59.6
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+++|. ..+.| +|+|+-.-...... ....-..+..++.+.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~N~~~gla~A~-~~~~P------vl~I~G~~~~~~~~--~~~~q~~D~~~~~~~vtk~~~~v~--~~~~ 137 (588)
T TIGR01504 69 GVCIGTSGPAGTDMITGLYSAS-ADSIP------ILCITGQAPRARLH--KEDFQAVDIAAIAKPVSKMAVTVR--EAAL 137 (588)
T ss_pred EEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCccccC--CCcccccCHHHHhhhhceEEEEcC--CHHH
Confidence 4555666888877433444332 23999 99997533322111 111112345566666655566665 7899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLVC 496 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~t 496 (925)
+..+++.|+..++.++ |||+|++-.
T Consensus 138 i~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 138 VPRVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHHHHHHccCCCCeEEEEeCc
Confidence 9999999999888875 899999853
No 222
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=48.37 E-value=1e+02 Score=36.24 Aligned_cols=105 Identities=20% Similarity=0.142 Sum_probs=67.8
Q ss_pred ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchH--HHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCC
Q 002419 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVV--YETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMS 443 (925)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v--~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~ 443 (925)
.+.+|+|+++|=.. +++ +++|+|.. +|.|-++ .|| +|.++.|-... |+..
T Consensus 61 A~~~aiGAs~aGaR-----------a~T-----aTSg~Gl~lm~E~l~~aa~~~lP------iVi~~~~R~~p--~~~~- 115 (390)
T PRK08366 61 AMAACIGASAAGAR-----------AFT-----ATSAQGLALMHEMLHWAAGARLP------IVMVDVNRAMA--PPWS- 115 (390)
T ss_pred HHHHHHHHHhhCCC-----------eEe-----eeCcccHHHHhhHHHHHHhcCCC------EEEEEeccCCC--CCCC-
Confidence 34567787776332 222 34678865 4888888 899 77776644332 3221
Q ss_pred CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecC
Q 002419 444 GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRF 500 (925)
Q Consensus 444 ~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~ 500 (925)
. -.+-+|+-...+.-.+..=..|+++++.-+..|.+.+.+..-||++-.-+||..
T Consensus 116 ~--~~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s 170 (390)
T PRK08366 116 V--WDDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS 170 (390)
T ss_pred C--cchhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc
Confidence 1 112233222222222444558999999999999999999999999999888864
No 223
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=48.24 E-value=83 Score=38.37 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=60.5
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=.-+++|. ..++| +|+|+-.-....--.........+..++++.+---..+|+ +++.
T Consensus 74 gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~--~~~~ 144 (569)
T PRK09259 74 GVCLTVSAPGFLNGLTALANAT-TNCFP------MIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVN--RAED 144 (569)
T ss_pred EEEEEcCCccHHHHHHHHHHHH-hcCCC------EEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcC--CHHH
Confidence 5677777888888444444443 23999 9999854321100000111112344556666666677775 7899
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
+.+++..|+..+..+ .|||.|++-
T Consensus 145 ~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 145 IGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred HHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 999999999988886 489999985
No 224
>PRK07524 hypothetical protein; Provisional
Probab=47.82 E-value=95 Score=37.45 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=60.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccccc-CCCCCcCcccHHHHHhhcCccEEEEeCCCHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-DPMSGRSSQYCTDVAKALDAPIFHVNGDDME 470 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT-~~~~~rss~~~~d~Aka~giP~~~VdG~D~e 470 (925)
.++++..|=|+++.-+-+++|. ..++| +|+|+-......-. .........+..++.+.+---...|+ +++
T Consensus 66 gv~~~t~GpG~~n~~~gi~~A~-~~~~P------vl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~ 136 (535)
T PRK07524 66 GVCFIITGPGMTNIATAMGQAY-ADSIP------MLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAE 136 (535)
T ss_pred eEEEECCCccHHHHHHHHHHHH-hcCCC------EEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHH
Confidence 5777777888888555555443 23999 99988543321100 00000111355566666655555555 789
Q ss_pred HHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 471 AVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 471 AV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
.+.+++..|+..++.. .|||+|++-
T Consensus 137 ~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 137 DLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9999999999999887 599999884
No 225
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=47.69 E-value=74 Score=38.97 Aligned_cols=93 Identities=11% Similarity=0.058 Sum_probs=58.4
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+++|. ..+.| +|+|+-.-... .......-..+...+++.+--...+|+ +++.
T Consensus 78 gv~~~t~GPG~~N~l~gl~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~ 146 (585)
T CHL00099 78 GVCFATSGPGATNLVTGIATAQ-MDSVP------LLVITGQVGRA--FIGTDAFQEVDIFGITLPIVKHSYVVR--DARD 146 (585)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCCcc--ccCCCCccccchhhhhcCceeEEEEeC--CHHH
Confidence 5677777888888555555443 34999 89887431110 000011111233444555545566665 8899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+.++++.|+..++.+. |||.|++-
T Consensus 147 i~~~l~~A~~~A~~~~~GPV~l~iP 171 (585)
T CHL00099 147 ISRIVAEAFYIAKHGRPGPVLIDIP 171 (585)
T ss_pred HHHHHHHHHHHHccCCCCeEEEecC
Confidence 9999999999888765 89999974
No 226
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=46.83 E-value=85 Score=38.11 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=56.3
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++||. ..+.| +|+|.-.-... .......-..+..++++.+=--..+| ++++.
T Consensus 73 gv~~~t~GpG~~N~~~gi~~A~-~~~~P------vl~i~g~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~ 141 (557)
T PRK08199 73 GICFVTRGPGATNASIGVHTAF-QDSTP------MILFVGQVARD--FREREAFQEIDYRRMFGPMAKWVAEI--DDAAR 141 (557)
T ss_pred EEEEeCCCccHHHHHHHHHHHh-hcCCC------EEEEecCCccc--cCCCCcccccCHHHhhhhhhceeeec--CCHHH
Confidence 5667777888887444444433 22999 99887432211 11111111123334444333334455 58999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+.+++..|+..+..+. |||.|++-
T Consensus 142 ~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 142 IPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999998885 89999874
No 227
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.40 E-value=43 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 440 DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 440 ~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
|.++-|-+...+=-|++||+..+-++|++-+.|.+..+.-++ +++||.+|+..+
T Consensus 13 p~RDkRiTTHV~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~~ 66 (179)
T COG1303 13 PERDKRITTHVALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFGV 66 (179)
T ss_pred ccccccchhhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEcc
Confidence 445666677777779999999999999977777777777665 799999888754
No 228
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.31 E-value=84 Score=38.38 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=60.2
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|++++-.-+++|. ..+.| +|+|.-.-... .......-..+...+++.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~n~l~gia~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~~~~~~itk~~~~v~--~~~~ 137 (572)
T PRK08979 69 GVVLVTSGPGATNTITGIATAY-MDSIP------MVVLSGQVPSN--LIGNDAFQECDMIGISRPVVKHSFLVK--DAED 137 (572)
T ss_pred eEEEECCCchHhHHHHHHHHHh-hcCCC------EEEEecCCCcc--ccCCCCCcccchhHHhhhceeEEEecC--CHHH
Confidence 5666667889888655555554 23999 88887422111 001111112244556666555566666 8899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+...++.|+..++.++ |||.|++-
T Consensus 138 ~~~~l~~A~~~A~~~~~GPV~l~iP 162 (572)
T PRK08979 138 IPEIIKKAFYIASTGRPGPVVIDLP 162 (572)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEecC
Confidence 9999999999988876 89999974
No 229
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.63 E-value=81 Score=38.38 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=57.2
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|.++.-+-+++|. ..+.| +|+|.-. ...........-..+...+++.+---..+| ++++.
T Consensus 68 gv~~~t~GpG~~n~~~gla~A~-~~~~P------vl~i~G~--~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~ 136 (563)
T PRK08527 68 GVAIVTSGPGFTNAVTGLATAY-MDSIP------LVLISGQ--VPNSLIGTDAFQEIDAVGISRPCVKHNYLV--KSIEE 136 (563)
T ss_pred EEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEecC--CCccccCCCCCcccchhhhhhcccceEEEc--CCHHH
Confidence 5677777888888555555554 22899 8888631 111100011111113333444443344455 58999
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||.|++-
T Consensus 137 i~~~l~~A~~~a~s~~~GPV~l~iP 161 (563)
T PRK08527 137 LPRILKEAFYIARSGRPGPVHIDIP 161 (563)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999999998876 89999985
No 230
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.24 E-value=96 Score=37.79 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=60.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++||. ..+.| +|+|.-.-.... ......-..+...+.+.+=-...+|+ ++++
T Consensus 69 gv~~~t~GpG~~N~l~~i~~A~-~~~~P------vlvi~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~s~~v~--~~~~ 137 (574)
T PRK06882 69 GCVLVTSGPGATNAITGIATAY-TDSVP------LVILSGQVPSNL--IGTDAFQECDMLGISRPVVKHSFIVK--NAED 137 (574)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecCCCccc--cCCCcccccchhhhhhcccceEEEeC--CHHH
Confidence 5677777999888666666654 23999 888874322111 00111111244455665555566665 8888
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+...+..|+..+..++ |||.|++-
T Consensus 138 ~~~~l~~A~~~A~~~~~GPV~l~iP 162 (574)
T PRK06882 138 IPSTIKKAFYIASTGRPGPVVIDIP 162 (574)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEecC
Confidence 8889999998887764 99999984
No 231
>PLN02573 pyruvate decarboxylase
Probab=44.07 E-value=57 Score=39.99 Aligned_cols=95 Identities=13% Similarity=0.046 Sum_probs=56.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccc-cCC--CC---CcCcccHHHHHhhcCccEEEEe
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDP--MS---GRSSQYCTDVAKALDAPIFHVN 465 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~t-T~~--~~---~rss~~~~d~Aka~giP~~~Vd 465 (925)
.++++..|=|+++.-.-+++|. ..+.| +|+|+-.-..... +.. .. ........+.++.+-.-..+|.
T Consensus 80 gv~~~t~GpG~~n~~~gla~A~-~d~~P------vl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~ 152 (578)
T PLN02573 80 GACVVTFTVGGLSVLNAIAGAY-SENLP------VICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN 152 (578)
T ss_pred CeEEEecCccHHHHHHHHHHHH-HhCCC------EEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC
Confidence 6788888988887444444443 23999 9999854332110 000 00 0000011233443333444554
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 466 GDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 466 G~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+++.+.+.++.|+..++...|||.|++=
T Consensus 153 --~~~~~~~~l~~A~~~A~~~~gPV~l~iP 180 (578)
T PLN02573 153 --NLEDAHELIDTAISTALKESKPVYISVS 180 (578)
T ss_pred --CHHHHHHHHHHHHHHHHhcCCCEEEEee
Confidence 7888888888888888888899999983
No 232
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=44.00 E-value=65 Score=39.79 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=54.2
Q ss_pred CcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCC
Q 002419 422 SIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFG 501 (925)
Q Consensus 422 ~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~G 501 (925)
.+||+|.|+-+.---.|.. .++.+ --.++...+|++ |=.||.++++.++.|.+.-++++-||++-+.| +-+
T Consensus 108 v~GGlviv~aDDpg~~SSq-neqds----r~y~~~a~iPvL--eP~d~Qea~d~~~~afelSe~~~~pVilr~tt--r~~ 178 (640)
T COG4231 108 VTGGLVIVVADDPGMHSSQ-NEQDS----RAYGKFALIPVL--EPSDPQEAYDYVKYAFELSEKSGLPVILRTTT--RVS 178 (640)
T ss_pred ccccEEEEEccCCCccccc-chhHh----HHHHHhcCceee--cCCChHHHHHHHHHHHHHHHHhCCCEEEEEEe--eee
Confidence 4688888877655333322 22221 123677789998 45599999999999999999999999987665 667
Q ss_pred CCCCC
Q 002419 502 HNEID 506 (925)
Q Consensus 502 Hne~D 506 (925)
|+.+|
T Consensus 179 h~~~~ 183 (640)
T COG4231 179 HSRGD 183 (640)
T ss_pred cccee
Confidence 77654
No 233
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.78 E-value=88 Score=38.33 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=91.7
Q ss_pred cCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccC
Q 002419 266 EGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSY 345 (925)
Q Consensus 266 eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~ 345 (925)
.-+++...+...+++.-.++||+. |||.+ |-....|+.++.- .. ++++.+. ..
T Consensus 15 ~~~~~~~~~a~~l~~~L~~~GV~~-vFgvp------------G~~~~~l~dal~~-~~------------~i~~i~~-rh 67 (587)
T PRK06965 15 SPPAADSIGAEILMKALAAEGVEF-IWGYP------------GGAVLYIYDELYK-QD------------KIQHVLV-RH 67 (587)
T ss_pred CCCchhccHHHHHHHHHHHcCCCE-EEecC------------CcchHHHHHHHhh-cC------------CCeEEEe-CC
Confidence 344555666667777666789976 67732 5555566666631 10 1223332 11
Q ss_pred CCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCccc
Q 002419 346 DRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGG 425 (925)
Q Consensus 346 ~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GG 425 (925)
+ ....-.|.|.|++.. +-.++++..|=|++++-.-+++|. ..+.|
T Consensus 68 E--------------------~~A~~~AdgYar~tg--------~~gv~~~t~GpG~~N~l~gl~~A~-~~~~P------ 112 (587)
T PRK06965 68 E--------------------QAAVHAADGYARATG--------KVGVALVTSGPGVTNAVTGIATAY-MDSIP------ 112 (587)
T ss_pred H--------------------HHHHHHHHHHHHHhC--------CCeEEEECCCccHHHHHHHHHHHh-hcCCC------
Confidence 1 111124555555432 125666666888887444444433 23999
Q ss_pred EEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 426 TIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 426 vI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+|+|.-. ..............+..++.+.+---..+|. +++++.+.+..|+..++.++ |||.|++-
T Consensus 113 vl~i~G~--~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 179 (587)
T PRK06965 113 MVVISGQ--VPTAAIGQDAFQECDTVGITRPIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIP 179 (587)
T ss_pred EEEEecC--CCccccCCCCcccccHHHHhcCCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8888631 1111001111111244455555555566665 88899999999999988874 99999984
No 234
>PRK08617 acetolactate synthase; Reviewed
Probab=41.40 E-value=1.1e+02 Score=37.18 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=57.8
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++||. ..+.| +|+|.-....... .....-..+..++++.+---..+|+ ++++
T Consensus 69 gv~~vt~GpG~~N~l~gl~~A~-~~~~P------vlvisG~~~~~~~--~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~ 137 (552)
T PRK08617 69 GVVLVTSGPGVSNLATGLVTAT-AEGDP------VVAIGGQVKRADR--LKRTHQSMDNVALFRPITKYSAEVQ--DPDN 137 (552)
T ss_pred EEEEECCCCcHhHhHHHHHHHh-hcCCC------EEEEecCCccccc--CCCCccccchhhhhhhhcceEEEeC--CHHH
Confidence 5666777888888544444443 23899 8888753221100 0011111233455565555555664 8899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..+...+ |||.|++-
T Consensus 138 ~~~~i~~A~~~a~~~~~GPV~l~iP 162 (552)
T PRK08617 138 LSEVLANAFRAAESGRPGAAFVSLP 162 (552)
T ss_pred HHHHHHHHHHHHccCCCCcEEEeCh
Confidence 9999999998888774 89999985
No 235
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=41.01 E-value=1.1e+02 Score=37.35 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=55.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=.-++||. ..+.| +|+|.-.-.... ......-..+...+.+.+---..+| .+++.
T Consensus 80 gv~~~t~GPG~~N~~~gl~~A~-~~~~P------vl~ItG~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~ 148 (571)
T PRK07710 80 GVVIATSGPGATNVVTGLADAM-IDSLP------LVVFTGQVATSV--IGSDAFQEADIMGITMPVTKHNYQV--RKASD 148 (571)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEeccCCccc--cCCCCccccchhhhhhcccceEEec--CCHHH
Confidence 5666667888887444444443 23999 998875433211 0011111112333343332333344 58899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||.|++-
T Consensus 149 ~~~~i~~A~~~A~~~~~GPV~l~iP 173 (571)
T PRK07710 149 LPRIIKEAFHIATTGRPGPVLIDIP 173 (571)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 9999999998888875 99999986
No 236
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=40.28 E-value=1.3e+02 Score=36.74 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=55.8
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-+.++++. ..++| +|+|+-.-... .......-..+...+++.+---...| .+++.
T Consensus 65 gv~~~t~GPG~~n~~~~i~~A~-~~~~P------vl~I~G~~~~~--~~~~~~~q~id~~~~~~~vtk~~~~v--~~~~~ 133 (575)
T TIGR02720 65 GVCFGSAGPGATHLLNGLYDAK-EDHVP------VLALVGQVPTT--GMNMDTFQEMNENPIYADVAVYNRTA--MTAES 133 (575)
T ss_pred eEEEeCCCCcHHHHHHHHHHHh-hcCCC------EEEEecCCccc--cCCCCCcceechhhhhhhcceEEEEe--CCHHH
Confidence 6777777888888555555554 23999 99997533321 00111111112233344433333344 36777
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+...+..|+..+...+|||.|++-
T Consensus 134 ~~~~i~~A~~~A~~~~GPV~l~iP 157 (575)
T TIGR02720 134 LPHVIDEAIRRAYAHNGVAVVTIP 157 (575)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEC
Confidence 888888888877778899999985
No 237
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=40.06 E-value=1.1e+02 Score=37.24 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=56.2
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|++++=.-++||. ..+.| +|+|.-.-. ............+..++++.+---.++| .++++
T Consensus 72 ~v~~~t~GpG~~n~~~gl~~A~-~~~~P------vl~i~G~~~--~~~~~~~~~q~~d~~~~~~~itk~s~~v--~~~~~ 140 (561)
T PRK06048 72 GVCVATSGPGATNLVTGIATAY-MDSVP------IVALTGQVP--RSMIGNDAFQEADITGITMPITKHNYLV--QDAKD 140 (561)
T ss_pred eEEEECCCCcHHHHHHHHHHHh-hcCCC------EEEEeccCC--ccccCCCCccccchhhhccCcceEEEEe--CCHHH
Confidence 5667777888887444444443 22999 888864211 1110111111123444444444444455 47889
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..+++.|+..++.+. |||.|++-
T Consensus 141 i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 141 LPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecC
Confidence 9999999998888874 89999994
No 238
>PRK05858 hypothetical protein; Provisional
Probab=39.63 E-value=1.3e+02 Score=36.51 Aligned_cols=93 Identities=15% Similarity=0.087 Sum_probs=58.3
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|++++-.-++||. ..+.| +|+|.-.-.... .....+-..+...+.+.+---..+|+ +++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~-~~~~P------vl~i~g~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~ 137 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQ-FNQSP------LVVLGGRAPALR--WGMGSLQEIDHVPFVAPVTKFAATAQ--SAEN 137 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHH-hcCCC------EEEEeCCCCccc--CCCCCCcccchhhhhhhhhceEEEeC--CHHH
Confidence 5666666888887555555543 23999 898874322111 00111112344555666655666664 6888
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
+.+++..|+.-+... .|||.|++-
T Consensus 138 ~~~~i~~A~~~A~~~~~GPV~l~iP 162 (542)
T PRK05858 138 AGRLVDQALQAAVTPHRGPVFVDFP 162 (542)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEcC
Confidence 888888998888776 489999984
No 239
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=38.63 E-value=63 Score=32.84 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=75.2
Q ss_pred ceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhh-hhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc---cCCCCC
Q 002419 698 MFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFG-DFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH---GYDGQG 773 (925)
Q Consensus 698 ~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFg-DF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh---G~~G~G 773 (925)
.+|++. ...|.+....+.||+..+-++-++ =.+.| -+.|. ++....-|..+.||+++... ...+++
T Consensus 39 ~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~-~~~~GpG~~n~--------~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~ 108 (172)
T PF02776_consen 39 GIRFIP-VRHEQGAAFMADGYARATGRPGVV-IVTSGPGATNA--------LTGLANAYADRIPVLVITGQRPSAGEGRG 108 (172)
T ss_dssp TSEEEE--SSHHHHHHHHHHHHHHHSSEEEE-EEETTHHHHTT--------HHHHHHHHHTT-EEEEEEEESSGGGTTTT
T ss_pred ceeeec-ccCcchhHHHHHHHHHhhccceEE-EeecccchHHH--------HHHHhhcccceeeEEEEecccchhhhccc
Confidence 456665 678999999999999876655442 22222 23332 22221223346899888643 335666
Q ss_pred ccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh---ccCCCcEEEEecccccCCC
Q 002419 774 PEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH---REFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 774 peHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~---~~~~~Pli~~~pK~Llr~~ 850 (925)
..|......+.++-+ --....+++|++.-..|+++++ ...+.|+.+--|+.++..+
T Consensus 109 ~~q~~~d~~~~~~~~---------------------~k~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~~~~ 167 (172)
T PF02776_consen 109 AFQQEIDQQSLFRPV---------------------TKWSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQEAE 167 (172)
T ss_dssp STTSSTHHHHHHGGG---------------------SSEEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHHTSE
T ss_pred ccccchhhcchhccc---------------------cchhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHhhCc
Confidence 666333344443311 1235666899999999999876 3569999999999888654
No 240
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=37.93 E-value=1e+02 Score=37.64 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=59.5
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCC----C--CCcCc-ccHHHHHhhcCccEEEE
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDP----M--SGRSS-QYCTDVAKALDAPIFHV 464 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~----~--~~rss-~~~~d~Aka~giP~~~V 464 (925)
.++++..|=|+++.=.-++|| ...+.| +|+|+-.-.....-.. . ..... .+..++++.+---..+|
T Consensus 77 gv~~~t~GPG~~N~~~gla~A-~~d~~P------vl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v 149 (569)
T PRK08327 77 QAVMVHVDVGTANALGGVHNA-ARSRIP------VLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEI 149 (569)
T ss_pred eEEEEecCHHHHHHHHHHHHH-hhcCCC------EEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhccc
Confidence 567777788888855555555 234999 9999865332110000 0 00111 13444555544445555
Q ss_pred eCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 465 NGDDMEAVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 465 dG~D~eAV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
+ +++.+..++..|+..+..+ .|||+|++-
T Consensus 150 ~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 150 R--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred C--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 5 7889999999999998876 689999985
No 241
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=37.56 E-value=1.3e+02 Score=36.80 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=58.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.=.-+++|. ..+.| +|+|.-.-... .......-..+..++++.+-.-..+|+ ++++
T Consensus 75 gv~~~t~GPG~~n~~~gla~A~-~~~~P------vl~i~G~~~~~--~~~~~~~q~~d~~~~~~~itk~s~~v~--~~~~ 143 (566)
T PRK07282 75 GVAVVTSGPGATNAITGIADAM-SDSVP------LLVFTGQVARA--GIGKDAFQEADIVGITMPITKYNYQIR--ETAD 143 (566)
T ss_pred eEEEECCCccHHHHHHHHHHHh-hcCCC------EEEEecccccc--cCCCCCccccChhchhcCCCceeEEcC--CHHH
Confidence 5677777888887444444433 22999 99887542211 000111111233345555545555665 7889
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..++.++ |||.|++-
T Consensus 144 ~~~~l~~A~~~A~~~~~GPV~l~iP 168 (566)
T PRK07282 144 IPRIITEAVHIATTGRPGPVVIDLP 168 (566)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 9999999999998875 99999984
No 242
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=37.44 E-value=1e+02 Score=37.34 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=52.6
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccc-cCCCCCcCcc---cHHHHHhhcCccEEEEeCC
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDPMSGRSSQ---YCTDVAKALDAPIFHVNGD 467 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~t-T~~~~~rss~---~~~d~Aka~giP~~~VdG~ 467 (925)
.++++..|=|+++.=.-+++|. ..++| +|+|.-+...... .......... +..++++.+---...| .
T Consensus 65 gv~~~t~GpG~~n~~~gia~A~-~~~~P------vl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v--~ 135 (535)
T TIGR03394 65 GVAAVTYGAGAFNMVNAIAGAY-AEKSP------VVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVL--D 135 (535)
T ss_pred eEEEEecchHHHhhhhHHHHHh-hcCCC------EEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEe--C
Confidence 6777888999988444444443 33999 9999754332110 0000000110 1223333332223334 3
Q ss_pred CHHHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 468 DMEAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 468 D~eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
+++.+.++++.|+..+....+||+|++-.
T Consensus 136 ~~~~~~~~~~~A~~~a~~~~gPv~i~iP~ 164 (535)
T TIGR03394 136 DPATAPAEIARVLGSARELSRPVYLEIPR 164 (535)
T ss_pred ChHHhHHHHHHHHHHHHHCCCCEEEEech
Confidence 66666667777777666677899999853
No 243
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=35.58 E-value=1.3e+02 Score=36.76 Aligned_cols=92 Identities=12% Similarity=0.024 Sum_probs=50.3
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++||. ..++| +|+|.-+-...... ....-..+..++++.+-.-..+|+ +++.
T Consensus 68 gv~~~t~GpG~~n~~~gi~~A~-~~~~P------vl~i~G~~~~~~~~--~~~~Q~~d~~~l~~~itk~~~~v~--~~~~ 136 (574)
T PRK09124 68 AVCAGSCGPGNLHLINGLFDCH-RNHVP------VLAIAAHIPSSEIG--SGYFQETHPQELFRECSHYCELVS--NPEQ 136 (574)
T ss_pred EEEEECCCCCHHHHHHHHHHHh-hcCCC------EEEEecCCccccCC--CCCccccChhhhcccceeeeEEeC--CHHH
Confidence 3444445777766433444433 33999 99887543221100 001111233334443322333443 7777
Q ss_pred HHHHHHHHHHHHHccCCcEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
+..+++.|+..+...+|||.|++
T Consensus 137 ~~~~i~~A~~~A~~~~gPV~l~i 159 (574)
T PRK09124 137 LPRVLAIAMRKAILNRGVAVVVL 159 (574)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEe
Confidence 77777778877777779999998
No 244
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=34.79 E-value=95 Score=29.95 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=29.1
Q ss_pred CcccHHHHHhhcCccEEEE--eCCCH-HHHHHHHHHHHHHHHccCCcEEEEEEE
Q 002419 446 SSQYCTDVAKALDAPIFHV--NGDDM-EAVAHVCELAAEWRQTFHSDVVVDLVC 496 (925)
Q Consensus 446 ss~~~~d~Aka~giP~~~V--dG~D~-eAV~~a~~~A~e~rr~~~~PvlIe~~t 496 (925)
+.......|+..|+..+|+ ++.++ .+-+.++..+++ .-.+||++.|.+
T Consensus 45 ~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~s 95 (110)
T PF04273_consen 45 SSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRS 95 (110)
T ss_dssp -HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SC
T ss_pred CHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCC
Confidence 3445778899999998884 65443 344445555554 457899999965
No 245
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.72 E-value=51 Score=24.68 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 002419 525 SLEIYQNKLLECQHVTQEDINKIQEKVN 552 (925)
Q Consensus 525 pi~~y~~~Li~~Gi~t~ee~~~i~~e~~ 552 (925)
.+..+. .|.+.|++|++|.++.++++.
T Consensus 4 ~L~~L~-~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLK-ELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHH-HHHHcCCCCHHHHHHHHHHHh
Confidence 344443 467999999999999887653
No 246
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=34.47 E-value=1.7e+02 Score=35.96 Aligned_cols=93 Identities=14% Similarity=-0.008 Sum_probs=53.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-++||. ..+.| +|+|.-.-.. ...........+..++++.+---...|+ +++.
T Consensus 68 ~v~~v~~GpG~~N~~~gl~~A~-~~~~P------vl~I~G~~~~--~~~~~~~~Qe~d~~~l~~~~tk~~~~v~--~~~~ 136 (578)
T PRK06546 68 AVCAGSCGPGNLHLINGLYDAH-RSGAP------VLAIASHIPS--AQIGSGFFQETHPDRLFVECSGYCEMVS--SAEQ 136 (578)
T ss_pred eEEEECCCCcHHHHHHHHHHHH-hcCCC------EEEEeCCCCc--cccCCCCccccChhhhcccceeeEeEeC--CHHH
Confidence 4555566888887555555554 33899 8888642111 0000001111122334443333344454 7788
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+..+++.|++.+....|||.|++-
T Consensus 137 ~~~~i~~A~~~A~~~~GPV~l~lP 160 (578)
T PRK06546 137 APRVLHSAIQHAVAGGGVSVVTLP 160 (578)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcC
Confidence 888888888888877899999974
No 247
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.45 E-value=25 Score=33.01 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=41.8
Q ss_pred EEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHH
Q 002419 395 VLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAH 474 (925)
Q Consensus 395 v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~ 474 (925)
+++.|+-.+.|--.+.+.|.-.+.| ++++.||. .++...+.++.+..|+++ +++.++-
T Consensus 8 vl~~g~~~ipga~e~l~~L~~~g~~-------~~~lTNns---------~~s~~~~~~~L~~~Gi~~------~~~~i~t 65 (101)
T PF13344_consen 8 VLYNGNEPIPGAVEALDALRERGKP-------VVFLTNNS---------SRSREEYAKKLKKLGIPV------DEDEIIT 65 (101)
T ss_dssp TSEETTEE-TTHHHHHHHHHHTTSE-------EEEEES-S---------SS-HHHHHHHHHHTTTT--------GGGEEE
T ss_pred EeEeCCCcCcCHHHHHHHHHHcCCC-------EEEEeCCC---------CCCHHHHHHHHHhcCcCC------CcCEEEC
Confidence 3456777777544455555555666 77788874 233345677778899994 3466666
Q ss_pred HHHHHHHHHHc
Q 002419 475 VCELAAEWRQT 485 (925)
Q Consensus 475 a~~~A~e~rr~ 485 (925)
....+.+|.++
T Consensus 66 s~~~~~~~l~~ 76 (101)
T PF13344_consen 66 SGMAAAEYLKE 76 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 77777777665
No 248
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=32.67 E-value=1.8e+02 Score=35.13 Aligned_cols=93 Identities=15% Similarity=0.020 Sum_probs=56.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-.-+++|. ..+.| +|+|+-.-..... .....-..+..++++.+---..+| +++++
T Consensus 63 gv~~~t~GpG~~n~l~gl~~A~-~~~~P------vl~I~G~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~i--~~~~~ 131 (539)
T TIGR02418 63 GVALVTSGPGCSNLVTGLATAN-SEGDP------VVAIGGQVKRADL--LKLTHQSMDNVALFRPITKYSAEV--QDPDA 131 (539)
T ss_pred eEEEECCCCCHhHHHHHHHHHh-hcCCC------EEEEeCCCccccc--ccCcccccchhhhhhcceeeeeec--CCHHH
Confidence 5677777888887444444432 22899 9999863221110 011111223344444433333344 58899
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+..++..|+..+...+ |||.|++-
T Consensus 132 ~~~~~~~A~~~a~~~~~GPV~l~iP 156 (539)
T TIGR02418 132 LSEVVANAFRAAESGKPGAAFVSLP 156 (539)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999998888774 89999984
No 249
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=31.52 E-value=85 Score=36.52 Aligned_cols=85 Identities=21% Similarity=0.361 Sum_probs=57.7
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhc---------CccEE
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKAL---------DAPIF 462 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~---------giP~~ 462 (925)
..=++++|--.|.|+=+|-|+++.-.++++ +||+.. |+..-+.++.+-. ..+++
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~------------slavAG-----Rn~~KL~~vL~~~~~k~~~~ls~~~i~ 67 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGL------------SLAVAG-----RNEKKLQEVLEKVGEKTGTDLSSSVIL 67 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCc------------eEEEec-----CCHHHHHHHHHHHhhccCCCcccceEE
Confidence 345788999999989999999987666632 344432 2222333332222 34588
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE-eecCCC
Q 002419 463 HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC-YRRFGH 502 (925)
Q Consensus 463 ~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t-YR~~GH 502 (925)
.+|++|+..+.+-++.| -|+|.+++ ||.||-
T Consensus 68 i~D~~n~~Sl~emak~~---------~vivN~vGPyR~hGE 99 (423)
T KOG2733|consen 68 IADSANEASLDEMAKQA---------RVIVNCVGPYRFHGE 99 (423)
T ss_pred EecCCCHHHHHHHHhhh---------EEEEeccccceecCc
Confidence 89999999987754443 48999998 999984
No 250
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=31.17 E-value=96 Score=35.55 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=37.6
Q ss_pred cHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEEeecCCCCCCCCCCC
Q 002419 449 YCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLVCYRRFGHNEIDEPSF 510 (925)
Q Consensus 449 ~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~tYR~~GHne~Ddp~y 510 (925)
+++.+|+-.---. |.-..|.-|-.+.+.|+...|.++ |||+||+-.-=...--|-|...|
T Consensus 118 di~~ia~pv~kwa--vtv~epalvp~v~qkafhlmrs~rpgpvlidlp~dvq~aeiefd~d~y 178 (592)
T COG3960 118 DIEAIAKPVSKWA--VTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMY 178 (592)
T ss_pred hHHHhhhhhhhhh--hhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccceEEEEEecCcccc
Confidence 4444544332222 334578889999999999998886 89999985422223334454433
No 251
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=29.01 E-value=1.4e+02 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=25.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 002419 527 EIYQNKLLECQHVTQEDINKIQEKVNRILSEE 558 (925)
Q Consensus 527 ~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a 558 (925)
+..-++.++.|.+|+++.+.|.+.+....+..
T Consensus 21 K~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 21 KQIIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999999999888877654
No 252
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.66 E-value=1.8e+02 Score=31.30 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCC
Q 002419 271 LIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTR 350 (925)
Q Consensus 271 ~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~ 350 (925)
+.||+.++...--+.|++=+++.--.|...+.++..||.|...+++..+--.. . -|||=+ +..-.+
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~---~---------Gk~~gf-d~~~pt- 154 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDK---D---------GKYLGF-DTNEPT- 154 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeecc---C---------Cccccc-ccCCcc-
Confidence 34666777665556787777777789999999999999999999987543211 1 124422 211111
Q ss_pred CCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccC
Q 002419 351 GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFA 404 (925)
Q Consensus 351 ~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~s 404 (925)
..++ |+|-+.+..++. -....++++||||+.
T Consensus 155 ---------------sdsg-----gKa~~i~~lrk~---~~~~~~~mvGDGatD 185 (227)
T KOG1615|consen 155 ---------------SDSG-----GKAEVIALLRKN---YNYKTIVMVGDGATD 185 (227)
T ss_pred ---------------ccCC-----ccHHHHHHHHhC---CChheeEEecCCccc
Confidence 1111 666665554442 246789999999997
No 253
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=28.52 E-value=1.6e+02 Score=28.97 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=63.4
Q ss_pred ceEEEcCCcchHHHHHHHhhhcCCCCC-cceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cCC--CCC
Q 002419 698 MFTVSNSSLSEFGVLGFELGYSMENPN-SLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GYD--GQG 773 (925)
Q Consensus 698 ~~rV~nspLSE~ailG~~~G~s~~g~~-~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~~--G~G 773 (925)
.++++.+ .+|....+++.||+..+-+ .++ =++.|- |....+..+. .-|..+.||+++... +.. +.+
T Consensus 34 ~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~--~~~~gp---G~~n~~~~l~----~A~~~~~Pll~i~~~~~~~~~~~~ 103 (155)
T cd07035 34 GIRYILV-RHEQGAVGMADGYARATGKPGVV--LVTSGP---GLTNAVTGLA----NAYLDSIPLLVITGQRPTAGEGRG 103 (155)
T ss_pred CCEEEEe-CCHHHHHHHHHHHHHHHCCCEEE--EEcCCC---cHHHHHHHHH----HHHhhCCCEEEEeCCCccccccCC
Confidence 3566554 4999999999999998654 444 334221 2222222222 222337899998754 222 222
Q ss_pred ccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhcc--C-CCcEEEEec
Q 002419 774 PEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHRE--F-RKPLVVMSP 843 (925)
Q Consensus 774 peHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~--~-~~Pli~~~p 843 (925)
....-...+-+-++| .+ ...++++++....+.++++.- . +.|+.+.-|
T Consensus 104 ~~q~~d~~~~~~~~~---------------------~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 104 AFQEIDQVALFRPIT---------------------KW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred cccccCHHHHHHHHh---------------------ce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 211111111111111 13 455578999999999998752 2 569888655
No 254
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=26.99 E-value=97 Score=36.42 Aligned_cols=95 Identities=11% Similarity=0.032 Sum_probs=53.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEe-CCC--
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVN-GDD-- 468 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~Vd-G~D-- 468 (925)
.++++..|=|+++.-.-++|+. ..+.| +|+|+-.-..... .....-..+..++.+.+---...|. ..+
T Consensus 65 gv~~~t~GpG~~N~l~gl~~A~-~~~~P------vl~i~g~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~ 135 (432)
T TIGR00173 65 VAVVCTSGTAVANLLPAVIEAS-YSGVP------LIVLTADRPPELR--GCGANQTIDQPGLFGSYVRWSLDLPLPEADE 135 (432)
T ss_pred EEEEECCcchHhhhhHHHHHhc-ccCCc------EEEEeCCCCHHHh--CCCCCcccchhhHHhhccceeeeCCCCCccc
Confidence 6777777888888555555543 33999 8988754321110 0000111133334444433344442 222
Q ss_pred -HHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 469 -MEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 469 -~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
++.+...++.|+..+..++ |||.|++-
T Consensus 136 ~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 164 (432)
T TIGR00173 136 PLAYLRSTVDRAVAQAQGPPPGPVHINVP 164 (432)
T ss_pred cHHHHHHHHHHHHHHhhCCCCCCEEEeCC
Confidence 2236677777887777755 89999994
No 255
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=26.40 E-value=3.3e+02 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 002419 524 SSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKD 564 (925)
Q Consensus 524 dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~ 564 (925)
..+..-++++.+.|-+|++|++.+.+-++..|++..+...+
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999999887766554
No 256
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=26.37 E-value=2.1e+02 Score=34.50 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=55.0
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCc-CcccHHHHHhhcCccEEEEeCCCHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGR-SSQYCTDVAKALDAPIFHVNGDDME 470 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~r-ss~~~~d~Aka~giP~~~VdG~D~e 470 (925)
.++++..|=|.++.-.-++||. ..+.| +|+|+-.-.. +....... ...+..++.+.+---...| .+++
T Consensus 75 ~v~~vt~gpG~~N~~~gia~A~-~~~~P------vl~i~g~~~~--~~~~~~~~~~~~d~~~l~~~~tk~~~~v--~~~~ 143 (530)
T PRK07092 75 AFVNLHSAAGVGNAMGNLFTAF-KNHTP------LVITAGQQAR--SILPFEPFLAAVQAAELPKPYVKWSIEP--ARAE 143 (530)
T ss_pred eEEEeccCchHHHHHHHHHHHh-hcCCC------EEEEecCCcc--cccCccchhcccCHHHhhcccccceeec--CCHH
Confidence 5666667777776444444443 23999 8877642111 11000100 0113334444443334445 6799
Q ss_pred HHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 471 AVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 471 AV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.+.+++..|+..++..+ |||.|++-
T Consensus 144 ~~~~~i~~A~~~A~~~~~GPv~l~iP 169 (530)
T PRK07092 144 DVPAAIARAYHIAMQPPRGPVFVSIP 169 (530)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 99999999999888886 79999985
No 257
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=25.39 E-value=1.5e+02 Score=24.55 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 002419 526 LEIYQNKLLECQHVTQEDINKIQEKVNRILSEE 558 (925)
Q Consensus 526 i~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a 558 (925)
+..|++.|.++|+ +++++++-.+.+++.+.+.
T Consensus 13 ~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 13 CLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 4568999999997 9999999999998888654
No 258
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=24.89 E-value=1.6e+02 Score=31.65 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=34.5
Q ss_pred EEEEEEcCcccCCcchHHHHHHhc----CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCC
Q 002419 393 MAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGD 467 (925)
Q Consensus 393 v~v~~~GDGA~sGqG~v~EalnlA----~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~ 467 (925)
++|++- |.|...+++--+ +|+. =+++||.||. .....++|+.+|+|++..+-.
T Consensus 2 i~vl~S------g~Gsn~~al~~~~~~~~l~~----~i~~visn~~------------~~~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVS------GGGSNFRAIHDACLDGRVNG----DVVVVVTNKP------------GCGGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEe------CCChhHHHHHHHHHcCCCCe----EEEEEEEeCC------------CChHHHHHHHhCCCEEEeccc
Confidence 455555 455566666544 5552 2778888875 123467899999999987654
No 259
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=24.53 E-value=3.2e+02 Score=27.49 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=50.4
Q ss_pred cccCCcchHHHHHH-hc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEE-eCCCHHHHHHH
Q 002419 401 GSFAGQGVVYETLH-LS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHV 475 (925)
Q Consensus 401 GA~sGqG~v~Ealn-lA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a 475 (925)
..|. .-.+|.+. .+ ++| +++++..-+++....- .+-....|.+-.-.+|.+.| --.|++++...
T Consensus 71 ~~f~--~ra~dqi~~~~a~~~~p------v~~~~~~~g~~~~~~G---~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~l 139 (156)
T cd07033 71 SFFL--QRAYDQIRHDVALQNLP------VKFVGTHAGISVGEDG---PTHQGIEDIALLRAIPNMTVLRPADANETAAA 139 (156)
T ss_pred HHHH--HHHHHHHHHHHhccCCC------eEEEEECCcEecCCCC---cccchHHHHHHhcCCCCCEEEecCCHHHHHHH
Confidence 5555 34455444 43 999 8988876555543221 11113456666667888876 56789999998
Q ss_pred HHHHHHHHHccCCcEEEEE
Q 002419 476 CELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 476 ~~~A~e~rr~~~~PvlIe~ 494 (925)
.+.|++ .++|++|-+
T Consensus 140 l~~a~~----~~~P~~irl 154 (156)
T cd07033 140 LEAALE----YDGPVYIRL 154 (156)
T ss_pred HHHHHh----CCCCEEEEe
Confidence 888885 356988754
No 260
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.26 E-value=2.9e+02 Score=31.12 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCcEEEEEEcCcccCCcchHHHHHHhc----CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEe
Q 002419 390 TKNMAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVN 465 (925)
Q Consensus 390 ~~~v~v~~~GDGA~sGqG~v~EalnlA----~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~Vd 465 (925)
...++|+.-|.|+. .+++--+ .||. =++.||.||. ++.++|+.+|+|.++++
T Consensus 93 ~~kiavl~Sg~g~n------l~al~~~~~~~~l~~----~i~~visn~~--------------~~~~~A~~~gIp~~~~~ 148 (289)
T PRK13010 93 RPKVVIMVSKFDHC------LNDLLYRWRMGELDM----DIVGIISNHP--------------DLQPLAVQHDIPFHHLP 148 (289)
T ss_pred CeEEEEEEeCCCcc------HHHHHHHHHCCCCCc----EEEEEEECCh--------------hHHHHHHHcCCCEEEeC
Confidence 45788888766554 4444444 5652 1666666663 34588999999999987
Q ss_pred CC
Q 002419 466 GD 467 (925)
Q Consensus 466 G~ 467 (925)
-.
T Consensus 149 ~~ 150 (289)
T PRK13010 149 VT 150 (289)
T ss_pred CC
Confidence 54
No 261
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=24.16 E-value=2.2e+02 Score=33.15 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=72.6
Q ss_pred CcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhC-CcCCcEEEcCc-cC--CCC--CccCCC
Q 002419 705 SLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL-RQSGLVVMLPH-GY--DGQ--GPEHSS 778 (925)
Q Consensus 705 pLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~-~~~~lv~~lPh-G~--~G~--GpeHSs 778 (925)
.=||.+-++..+|++++|-|..+ +..|.=....+ -.-.++. ...|+|+.... +. .|. -++||.
T Consensus 53 ~EsE~~a~s~v~GA~~aGar~~T---aTSg~Gl~Lm~--------E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D 121 (365)
T COG0674 53 MESEIGAISAVIGASYAGARAFT---ATSGQGLLLMA--------EALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSD 121 (365)
T ss_pred eccHHHHHHHHHHHHhhCcceEe---ecCCccHHHHH--------HHHHHHHhccCCeEEEEeccCcCCCcccccccHHH
Confidence 34899999999999999999987 23332111111 1123332 36899998865 32 333 345655
Q ss_pred chhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCCC
Q 002419 779 ARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRHK 850 (925)
Q Consensus 779 ~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~~ 850 (925)
- +|+ ++.++.+++-+|..++|.+-..+.+ .+++-|++++..+.+..|.
T Consensus 122 ~-----~~~-------------------r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~ 171 (365)
T COG0674 122 L-----MAA-------------------RDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHE 171 (365)
T ss_pred H-----HHH-------------------HccCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCc
Confidence 4 111 1113666666799999998777754 4589999999888887765
No 262
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.15 E-value=3.3e+02 Score=30.53 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=36.4
Q ss_pred CCCCcEEEEEEcCcccCCcchHHHHHHhc----CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEE
Q 002419 388 DRTKNMAVLIHGDGSFAGQGVVYETLHLS----ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFH 463 (925)
Q Consensus 388 ~~~~~v~v~~~GDGA~sGqG~v~EalnlA----~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~ 463 (925)
+..+.++|+.-|-| ...+++--+ .||. =++.||.||. ++..+|+.+|+|.++
T Consensus 82 ~~~~ki~vl~Sg~g------~nl~~l~~~~~~g~l~~----~i~~visn~~--------------~~~~~A~~~gIp~~~ 137 (280)
T TIGR00655 82 DKLKRVAILVSKED------HCLGDLLWRWYSGELDA----EIALVISNHE--------------DLRSLVERFGIPFHY 137 (280)
T ss_pred CCCcEEEEEEcCCC------hhHHHHHHHHHcCCCCc----EEEEEEEcCh--------------hHHHHHHHhCCCEEE
Confidence 34467788776554 445555544 5652 2666666653 355579999999999
Q ss_pred EeCC
Q 002419 464 VNGD 467 (925)
Q Consensus 464 VdG~ 467 (925)
++-.
T Consensus 138 ~~~~ 141 (280)
T TIGR00655 138 IPAT 141 (280)
T ss_pred cCCC
Confidence 8864
No 263
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=22.87 E-value=3.2e+02 Score=27.96 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=62.0
Q ss_pred ccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHH--hc--CCCCCCcccEEEEEEeCCcccccCCCCC
Q 002419 369 VDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLH--LS--ALPNYSIGGTIHIVVNNQVAFTTDPMSG 444 (925)
Q Consensus 369 ~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~Ealn--lA--~LP~y~~GGvI~vV~NNq~g~tT~~~~~ 444 (925)
.+.+|.|+|++-+. +.+++..++|=...+|-..+|.+. ++ ++| +. |+..-.++....-...
T Consensus 60 ~vg~a~GlA~~G~~--------~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~------v~-v~~~~g~~~~~~G~tH 124 (178)
T PF02779_consen 60 MVGMAAGLALAGGL--------RPPVESTFADFLTPAQIRAFDQIRNDMAYGQLP------VP-VGTRAGLGYGGDGGTH 124 (178)
T ss_dssp HHHHHHHHHHHSSS--------EEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-------EE-EEEEESGGGSTTGTTT
T ss_pred ccceeeeeeecccc--------cceeEeeccccccccchhhhhhhhhhhhcccce------ec-ceeecCcccccccccc
Confidence 44566677765420 155666676655543456667665 22 999 77 7766655444321111
Q ss_pred cCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEE
Q 002419 445 RSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDL 494 (925)
Q Consensus 445 rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~ 494 (925)
. ...|.+-.-.+|.+.| .=.|++++..+++.|++. +.++|++|-.
T Consensus 125 ~---s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 125 H---SIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp S---SSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred c---ccccccccccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 1 2344455556776665 557888888888888742 2578998865
No 264
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=22.15 E-value=4.2e+02 Score=29.61 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=61.6
Q ss_pred ccccceeehhhhhhhhhcCCC--CCCCcEEEEEEcCcccC---CcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccc
Q 002419 367 EAVDPVVIGKTRAKQYYSNDM--DRTKNMAVLIHGDGSFA---GQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFT 438 (925)
Q Consensus 367 g~~~PvA~G~A~A~q~~~~d~--~~~~~v~v~~~GDGA~s---GqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~t 438 (925)
|..-|++-|...|........ +.....+++++-||=.+ +.|...|++..| .+- |+-++|+|
T Consensus 151 GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~-----g~~~lvid------ 219 (261)
T COG1240 151 GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLR-----GIQLLVID------ 219 (261)
T ss_pred CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhc-----CCcEEEEe------
Confidence 444566666666654432211 12245666777777543 256678888887 222 25455544
Q ss_pred cCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHH
Q 002419 439 TDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCEL 478 (925)
Q Consensus 439 T~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~ 478 (925)
|.... .+.....++|...|.+.+|.|...-+.++.+++.
T Consensus 220 ~e~~~-~~~g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 220 TEGSE-VRLGLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred cCCcc-ccccHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 33333 3446788999999999999998777777766554
No 265
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.15 E-value=4.6e+02 Score=27.62 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=33.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEe
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVN 465 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~Vd 465 (925)
.++|+.-|.|+.. + .+.+++.-..++. ++..||.|+. + ....++|+..|+|++.++
T Consensus 2 riail~sg~gs~~-~-~ll~~~~~~~l~~----~I~~vi~~~~--------~----~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 2 RIVVLISGNGSNL-Q-AIIDACKEGKIPA----SVVLVISNKP--------D----AYGLERAAQAGIPTFVLS 57 (190)
T ss_pred eEEEEEcCCChhH-H-HHHHHHHcCCCCc----eEEEEEECCc--------c----chHHHHHHHcCCCEEEEC
Confidence 4778877766654 2 3333333335652 2555566653 1 235678999999999865
Done!