Query 002419
Match_columns 925
No_of_seqs 462 out of 3073
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 01:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgd_A 2-oxoglutarate dehydrog 100.0 2E-177 7E-182 1614.1 64.8 802 63-914 11-836 (933)
2 2xt6_A 2-oxoglutarate decarbox 100.0 8E-174 3E-178 1608.1 66.7 786 67-911 203-1014(1113)
3 2yic_A 2-oxoglutarate decarbox 100.0 1E-173 4E-178 1573.3 61.5 744 115-911 5-769 (868)
4 1qs0_A 2-oxoisovalerate dehydr 100.0 3.4E-61 1.2E-65 545.3 27.7 333 201-579 47-395 (407)
5 2bfd_A 2-oxoisovalerate dehydr 100.0 2.8E-61 9.6E-66 545.5 26.5 360 203-616 29-396 (400)
6 2ozl_A PDHE1-A type I, pyruvat 100.0 4.4E-60 1.5E-64 529.6 28.4 310 229-580 29-347 (365)
7 1w85_A Pyruvate dehydrogenase 100.0 3E-59 1E-63 523.7 27.3 324 202-579 17-350 (368)
8 1umd_A E1-alpha, 2-OXO acid de 100.0 7E-56 2.4E-60 496.6 30.8 332 203-579 11-351 (367)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 3E-40 1E-44 392.7 25.1 452 229-909 21-521 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.4E-37 4.8E-42 370.3 21.8 449 229-914 23-528 (629)
11 3mos_A Transketolase, TK; thia 100.0 1.9E-36 6.3E-41 359.6 29.4 398 362-917 119-524 (616)
12 1gpu_A Transketolase; transfer 100.0 5.6E-35 1.9E-39 350.5 33.9 436 360-916 112-579 (680)
13 3rim_A Transketolase, TK; TPP, 100.0 1.4E-35 4.7E-40 355.0 27.1 430 361-916 130-609 (700)
14 1r9j_A Transketolase; domains, 100.0 5.3E-34 1.8E-38 341.6 32.0 430 361-914 113-569 (673)
15 2e6k_A Transketolase; structur 100.0 1.4E-34 4.8E-39 345.6 26.8 423 360-917 114-567 (651)
16 2r8o_A Transketolase 1, TK 1; 100.0 1.1E-33 3.6E-38 339.0 31.7 438 360-915 110-573 (669)
17 3kom_A Transketolase; rossmann 100.0 9.5E-34 3.2E-38 338.3 30.0 428 361-915 113-573 (663)
18 3m49_A Transketolase; alpha-be 100.0 8.1E-33 2.8E-37 331.2 31.7 427 361-917 137-602 (690)
19 1itz_A Transketolase; calvin c 100.0 4.8E-32 1.6E-36 324.9 38.2 433 360-916 123-587 (675)
20 3l84_A Transketolase; TKT, str 100.0 4.2E-33 1.5E-37 331.0 25.5 415 360-915 110-549 (632)
21 3uk1_A Transketolase; structur 100.0 1E-32 3.6E-37 330.9 28.5 433 362-915 153-621 (711)
22 2ozl_B PDHE1-B, pyruvate dehyd 99.9 1.6E-27 5.6E-32 264.6 15.5 217 635-917 14-242 (341)
23 2qtc_A Pyruvate dehydrogenase 99.9 2.6E-25 9E-30 271.9 35.8 439 361-915 189-747 (886)
24 2bfd_B 2-oxoisovalerate dehydr 99.9 2E-27 7E-32 263.8 15.5 219 633-915 18-243 (342)
25 1ik6_A Pyruvate dehydrogenase; 99.9 1.8E-27 6E-32 266.9 14.7 215 635-914 50-272 (369)
26 1qs0_B 2-oxoisovalerate dehydr 99.9 6.1E-27 2.1E-31 259.4 14.9 227 635-912 4-240 (338)
27 1umd_B E1-beta, 2-OXO acid deh 99.9 2.8E-26 9.6E-31 252.7 17.4 218 635-917 3-228 (324)
28 1w85_B Pyruvate dehydrogenase 99.9 1.2E-25 4.1E-30 247.8 18.1 217 636-917 3-227 (324)
29 4feg_A Pyruvate oxidase; carba 99.6 3.7E-16 1.3E-20 185.2 8.2 158 364-544 420-597 (603)
30 3ahc_A Phosphoketolase, xylulo 99.4 1.1E-12 3.6E-17 159.1 16.9 454 361-915 172-684 (845)
31 1v5e_A Pyruvate oxidase; oxido 99.1 1E-10 3.6E-15 138.3 7.8 116 363-499 412-540 (590)
32 2pan_A Glyoxylate carboligase; 99.0 1.6E-10 5.3E-15 137.3 6.4 117 364-500 442-582 (616)
33 1q6z_A BFD, BFDC, benzoylforma 99.0 1E-10 3.4E-15 136.4 2.4 111 364-498 401-525 (528)
34 2iht_A Carboxyethylarginine sy 98.9 5E-10 1.7E-14 131.9 5.0 111 364-498 436-561 (573)
35 1ozh_A ALS, acetolactate synth 98.9 4.2E-10 1.4E-14 132.4 3.9 112 364-499 420-544 (566)
36 2vk8_A Pyruvate decarboxylase 98.9 3.1E-10 1.1E-14 133.3 2.2 116 364-498 413-542 (563)
37 2uz1_A Benzaldehyde lyase; thi 98.9 9.2E-10 3.1E-14 129.3 5.9 113 364-498 419-546 (563)
38 2pgn_A Cyclohexane-1,2-dione h 98.8 5.3E-10 1.8E-14 132.2 1.7 113 364-500 424-549 (589)
39 1ybh_A Acetolactate synthase, 98.8 2.2E-09 7.4E-14 126.9 6.4 113 364-500 426-560 (590)
40 1t9b_A Acetolactate synthase, 98.8 3.4E-09 1.1E-13 127.6 7.4 113 364-500 513-639 (677)
41 1ovm_A Indole-3-pyruvate decar 98.8 1.4E-09 4.8E-14 127.3 3.6 112 364-498 408-532 (552)
42 2nxw_A Phenyl-3-pyruvate decar 98.8 2.6E-09 8.8E-14 125.7 4.4 111 364-498 422-542 (565)
43 2vbf_A Branched-chain alpha-ke 98.8 3.2E-09 1.1E-13 124.9 5.2 112 364-498 425-551 (570)
44 2vbi_A Pyruvate decarboxylase; 98.8 2.6E-09 8.9E-14 125.6 4.2 111 364-498 409-533 (566)
45 2wvg_A PDC, pyruvate decarboxy 98.7 4.8E-09 1.6E-13 123.4 5.2 113 364-498 413-541 (568)
46 3eya_A Pyruvate dehydrogenase 98.7 6.3E-09 2.2E-13 121.9 6.1 112 364-499 406-530 (549)
47 2c31_A Oxalyl-COA decarboxylas 98.6 4.2E-08 1.4E-12 115.4 9.5 112 364-499 426-548 (568)
48 3hww_A 2-succinyl-5-enolpyruvy 98.6 1.9E-08 6.4E-13 118.2 6.0 109 365-498 418-539 (556)
49 2q28_A Oxalyl-COA decarboxylas 98.6 4.4E-08 1.5E-12 115.1 9.1 112 364-499 421-545 (564)
50 2x7j_A 2-succinyl-5-enolpyruvy 98.6 5.9E-09 2E-13 123.6 1.7 109 365-498 456-580 (604)
51 1yd7_A 2-keto acid:ferredoxin 98.6 1.6E-08 5.4E-13 114.4 4.2 121 699-849 65-192 (395)
52 3lq1_A 2-succinyl-5-enolpyruvy 98.5 8.8E-08 3E-12 113.0 6.2 107 367-498 439-560 (578)
53 2c42_A Pyruvate-ferredoxin oxi 98.0 1.8E-05 6.2E-10 100.8 12.6 126 689-850 46-178 (1231)
54 2c42_A Pyruvate-ferredoxin oxi 97.7 4.9E-05 1.7E-09 96.9 8.5 94 392-497 954-1069(1231)
55 2uz1_A Benzaldehyde lyase; thi 72.4 7.6 0.00026 45.2 8.5 105 372-495 56-162 (563)
56 2iht_A Carboxyethylarginine sy 71.2 5.6 0.00019 46.5 7.0 94 392-495 75-169 (573)
57 2pgn_A Cyclohexane-1,2-dione h 70.9 11 0.00038 44.2 9.5 104 372-495 58-163 (589)
58 1ozh_A ALS, acetolactate synth 69.1 7.3 0.00025 45.5 7.4 105 372-495 63-168 (566)
59 1ybh_A Acetolactate synthase, 66.6 10 0.00036 44.3 8.0 105 372-495 65-170 (590)
60 2wvg_A PDC, pyruvate decarboxy 65.3 11 0.00038 43.8 7.9 106 372-495 56-167 (568)
61 2q28_A Oxalyl-COA decarboxylas 62.5 7.2 0.00025 45.4 5.6 107 372-495 60-167 (564)
62 2vbi_A Pyruvate decarboxylase; 62.0 11 0.00037 44.0 6.9 106 372-495 56-167 (566)
63 2pan_A Glyoxylate carboligase; 58.8 19 0.00066 42.3 8.4 106 372-495 80-186 (616)
64 2nxw_A Phenyl-3-pyruvate decar 57.1 17 0.00057 42.4 7.4 107 372-495 74-184 (565)
65 1v5e_A Pyruvate oxidase; oxido 55.2 13 0.00045 43.6 6.1 95 392-499 70-165 (590)
66 3eya_A Pyruvate dehydrogenase 55.1 20 0.00068 41.6 7.6 105 372-495 56-160 (549)
67 1t9b_A Acetolactate synthase, 52.4 26 0.0009 41.9 8.2 105 372-495 135-240 (677)
68 2c31_A Oxalyl-COA decarboxylas 52.2 12 0.00041 43.5 5.2 95 392-495 74-169 (568)
69 2x7j_A 2-succinyl-5-enolpyruvy 50.5 16 0.00053 43.0 5.7 107 372-495 84-196 (604)
70 4feg_A Pyruvate oxidase; carba 47.0 21 0.00071 42.0 6.1 93 392-495 77-169 (603)
71 2vk8_A Pyruvate decarboxylase 44.7 20 0.00067 41.7 5.3 106 372-495 57-168 (563)
72 2zzd_B Thiocyanate hydrolase s 44.7 31 0.0011 34.1 5.9 37 515-557 108-144 (157)
73 4hhu_A OR280; engineered prote 44.5 30 0.001 32.5 5.4 40 458-502 83-122 (170)
74 1q6z_A BFD, BFDC, benzoylforma 38.8 26 0.0009 40.2 5.1 106 372-495 53-159 (528)
75 1yd7_A 2-keto acid:ferredoxin 38.0 30 0.001 38.7 5.2 43 457-503 150-192 (395)
76 4hhu_A OR280; engineered prote 36.8 44 0.0015 31.4 5.2 93 458-563 2-113 (170)
77 2kl8_A OR15; structural genomi 35.9 36 0.0012 28.7 4.1 36 462-502 5-40 (85)
78 3lq1_A 2-succinyl-5-enolpyruvy 35.4 53 0.0018 38.2 7.0 107 372-495 64-176 (578)
79 2vbf_A Branched-chain alpha-ke 33.1 36 0.0012 39.5 5.1 105 372-495 78-188 (570)
80 3av3_A Phosphoribosylglycinami 29.5 49 0.0017 33.8 4.8 57 392-466 5-61 (212)
81 1ovm_A Indole-3-pyruvate decar 26.6 73 0.0025 36.7 6.1 105 372-495 58-168 (552)
82 2ywr_A Phosphoribosylglycinami 26.5 74 0.0025 32.5 5.5 84 392-497 3-89 (216)
83 1bwx_A Parathyroid hormone; pe 24.9 31 0.0011 26.4 1.6 18 208-225 13-30 (39)
84 3kcq_A Phosphoribosylglycinami 22.4 1.1E+02 0.0037 31.5 5.8 60 391-468 9-68 (215)
85 3di5_A DINB-like protein; stru 21.7 2E+02 0.0068 27.1 7.3 102 185-312 40-148 (168)
86 2e62_A Protein AT5G25060; CWF2 21.0 1.3E+02 0.0045 25.2 4.8 33 526-558 25-57 (61)
No 1
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2e-177 Score=1614.09 Aligned_cols=802 Identities=45% Similarity=0.748 Sum_probs=659.5
Q ss_pred CCCccCCCCHHHHHHHHHHHhhCCCCcCHHHHHHHhhccC-----CCCCCC----------CC--------ChhhHHHHH
Q 002419 63 TDNFLDGTSSVYLEELQRSWEADPNSVDESWQNFFRNFVG-----QAATSP----------GI--------SGQTIQESM 119 (925)
Q Consensus 63 ~~s~l~g~N~~yiEelY~~y~~DP~SVd~sWr~~F~~~~~-----~~~~~~----------~~--------~~~~~~~~~ 119 (925)
++|||+|.|+.|||+||++|++||+||+++|+.||+++.. .....+ .. ......+++
T Consensus 11 ~~~~~~~~~~~~~~~~y~~~~~~p~sv~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (933)
T 2jgd_A 11 DSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQV 90 (933)
T ss_dssp -------------------------------------------------------------------------CHHHHHH
T ss_pred hhcccccccHHHHHHHHHHHhhCccccCHHHHHHHhcccccCCcccccccchhhhhhhccccccccccccCcchhHHHHH
Confidence 4589999999999999999999999999999999998731 100000 00 112345788
Q ss_pred HHHHHHHHHHhcCccccccCCCCCCCCCCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHh
Q 002419 120 RLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAY 199 (925)
Q Consensus 120 ~~~~li~ayr~~GH~~A~ldPL~~~~~~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L~~~Y 199 (925)
+|++||+|||.|||+.|+||||++..+..+++|++++|||+++|||++|.++. +.. +...+||+||+++|+++|
T Consensus 91 ~~~~li~~yr~~gh~~a~~dpl~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~~-----~~~-~~~~~~l~~~~~~l~~~y 164 (933)
T 2jgd_A 91 KVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGS-----FAS-GKETMKLGELLEALKQTY 164 (933)
T ss_dssp HHHHHHHHHHHHGGGGSCCCSSSCCCCC---CCSSGGGGCCC-CTTSEEECTT-----CC----CEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccccCCCCCCCCCCCCCCCHhHcCCchhhccceeccCc-----ccc-CcCcCcHHHHHHHHHHhc
Confidence 99999999999999999999999865667889999999999999999999872 221 456789999999999999
Q ss_pred cCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHH
Q 002419 200 CGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMF 279 (925)
Q Consensus 200 cg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l 279 (925)
||+||+|||||.|+++|+||+++||+. .+.+++|+++++|++|+++|.||+++.++|+++||||++|||++++|+++++
T Consensus 165 c~~ig~e~~~i~~~~~~~w~~~~~e~~-~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~~~G~Ea~i~g~~~~~ 243 (933)
T 2jgd_A 165 CGPIGAEYMHITSTEEKRWIQQRIESG-RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMI 243 (933)
T ss_dssp HSSEEEECSSCCCHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCTTCTTHHHHHHHHH
T ss_pred cCCCcceeeecCCHHHhHHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCchHHHHHHHHHH
Confidence 999999999999999999999999976 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeee
Q 002419 280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL 359 (925)
Q Consensus 280 ~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l 359 (925)
++|+..|++|+|+||+||||+|+|+|++|+|+.+||+||+|+.++.+ |+||||||+|++....+. |..+|+++
T Consensus 244 ~~a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~------g~gdv~~Hlg~~~~~~~~-gg~~~l~l 316 (933)
T 2jgd_A 244 RHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHL------GTGDVKYHMGFSSDFQTD-GGLVHLAL 316 (933)
T ss_dssp HHHHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CC------SCCCCGGGCCEEEEEEET-TEEEEEEE
T ss_pred HHHhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCC------CCCCccccCCcccccccC-CCceEEee
Confidence 99999999999999999999999999999999999999999986643 458999999976654443 45799999
Q ss_pred ccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccccc
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT 439 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT 439 (925)
++||||+|+++|+|+|+|+|.|+++.+.++.+.++||+|||||+++||++|||||+|.+.+|.|||+||||+||||||+|
T Consensus 317 ~~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist 396 (933)
T 2jgd_A 317 AFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTT 396 (933)
T ss_dssp CCCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC-----
T ss_pred cccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccC
Confidence 99999999999999999999998764433456899999999998449999999999999999999999999999999999
Q ss_pred -CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHH
Q 002419 440 -DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKI 518 (925)
Q Consensus 440 -~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~ 518 (925)
++.+++++.|++++|++||+|++||||+|++||++|++.|++++|++++|+|||++|||++|||++|+|+||+|+||+.
T Consensus 397 ~~~~~~~~~~~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~ 476 (933)
T 2jgd_A 397 SNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQK 476 (933)
T ss_dssp ----------CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHH
T ss_pred CCHHhcccchhHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHH
Confidence 9988888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCcccccccCCCCCChHH
Q 002419 519 IRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRIRNTGVKPEI 598 (925)
Q Consensus 519 i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~~~t~v~~~~ 598 (925)
|++++||+.+|+++|+++|++|++++++++++++++|+++++.|++..|.+.++ ..|.++... ......+|+++.+.
T Consensus 477 ~~~~~dPi~~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~--~~~~~~~~~-~~~~~~~tg~~~~~ 553 (933)
T 2jgd_A 477 IKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHS--FTWSPYLNH-EWDEEYPNKVEMKR 553 (933)
T ss_dssp HHTSCCHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGG--CTTGGGSSC-CTTCCCCCCCCHHH
T ss_pred HHccCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch--hhccccccc-ccccCCCCCCCHHH
Confidence 998899999999999999999999999999999999999999988754443332 356654321 11124679999999
Q ss_pred HHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeec
Q 002419 599 LKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQ 678 (925)
Q Consensus 599 l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq 678 (925)
|+.+++++..+|++|++|++++|++++|.+|+++++.+||+++|++||++||.+|++|+++||||++|||+|||||||||
T Consensus 554 l~~i~~~~~~~p~~~~~~~~v~~~~~~R~~~~~~~~~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~ 633 (933)
T 2jgd_A 554 LQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQ 633 (933)
T ss_dssp HHHHHHHTTCCCTTSCCCHHHHHHHHHHHHHHTTSSCBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECS
T ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCc
Q 002419 679 ETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQ 758 (925)
Q Consensus 679 ~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~ 758 (925)
+||..|+||++|. ++||++||+||||||++++||++|||+.|+++|+|||+|||||+|+||.++|||+++++.||+++
T Consensus 634 ~~g~~~~~l~~l~--~~~gp~rv~ds~IaE~~~vg~a~G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~~ 711 (933)
T 2jgd_A 634 SNGSTYTPLQHIH--NGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRM 711 (933)
T ss_dssp SSSCEECGGGCSC--TTCCCEEEECCCSCHHHHHHHHHHHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCCC
T ss_pred cCCceeechHHHH--HHcCCCeEEECCcCHHHHHHHHHHHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHccC
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcE
Q 002419 759 SGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPL 838 (925)
Q Consensus 759 ~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pl 838 (925)
+||||++||||+|+||+|||+|+|+|||||+.+ ||+|++||||+|+|||||+|+.+++++||
T Consensus 712 ~~vv~~l~~G~~g~G~~Hss~~~E~~l~~~~~p------------------nm~V~~Pst~~e~~~lLr~a~~~~~~~Pv 773 (933)
T 2jgd_A 712 CGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQ------------------NMQVCVPSTPAQVYHMLRRQALRGMRRPL 773 (933)
T ss_dssp CCCEEEEECCCSSSCTTSSCCCHHHHHHTCCTT------------------CCEEECCCSHHHHHHHHHHHHHSSCCCCE
T ss_pred CCEEEEEeCCCCCCCcccccchHHHHHHHhCCC------------------CeEEEecCCHHHHHHHHHHHHHhcCCCcE
Confidence 999999999999999999999999999999863 69999999999999999999877789999
Q ss_pred EEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhh
Q 002419 839 VVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFY 914 (925)
Q Consensus 839 i~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~ 914 (925)
||++||+|||++.++++++++.+ +.|+.+|++... ...++|+|||+|+|++||+|.++++.+.
T Consensus 774 ii~~pk~l~r~~~~~~~~~~~~~-----------~~f~~~ig~~~~--~~g~dV~~vI~~~G~v~~~l~aa~~~l~ 836 (933)
T 2jgd_A 774 VVMSPKSLLRHPLAVSSLEELAN-----------GTFLPAIGEIDE--LDPKGVKRVVMCSGKVYYDLLEQRRKNN 836 (933)
T ss_dssp EEEECSGGGGCTTCCBCHHHHHH-----------CCCCSEECCCSC--CCGGGCCEEEEECTTHHHHHHHHHHHTT
T ss_pred EEEecchhccCCCCcCCccccCC-----------CceeecCCcceE--eecCcceEEEEEchHHHHHHHHHHHHcc
Confidence 99999999999998888888875 779999988753 2367899999999999999999987664
No 2
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.6e-174 Score=1608.09 Aligned_cols=786 Identities=43% Similarity=0.724 Sum_probs=698.6
Q ss_pred cCCCCHH-HHHHHHHHHhhCCCCcCHHHHHHHhhccCCCCCCC----CCChhhHHHHHHHHHHHHHHHhcCccccccCCC
Q 002419 67 LDGTSSV-YLEELQRSWEADPNSVDESWQNFFRNFVGQAATSP----GISGQTIQESMRLLLLVRAYQVNGHMKAKLDPL 141 (925)
Q Consensus 67 l~g~N~~-yiEelY~~y~~DP~SVd~sWr~~F~~~~~~~~~~~----~~~~~~~~~~~~~~~li~ayr~~GH~~A~ldPL 141 (925)
+.|..+. |+.. ..++++||. +|+.||+++.... .++ ......+.++++|++||+|||.|||+.|+||||
T Consensus 203 iDGa~aa~FL~~-lk~~Le~p~----~w~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~yr~~gh~~a~~dpl 276 (1113)
T 2xt6_A 203 IQGAESGDFLRT-IHQLLLDDD----FFDEIFRELGIPY-EPVRWRTDNPDSIEDKNARVIELIAAYRNRGHLMADIDPL 276 (1113)
T ss_dssp CCHHHHHHHHHH-HHHHTTCHH----HHHHHHHHHTCCS-CCCCCCCCCCSCHHHHHHHHHHHHHHHHHHGGGSCCCCTT
T ss_pred echHHHHHHHHH-HHHHHhCcH----HHHHHHHhccCCC-CcccccccCcchhHHHHHHHHHHHHHHHHhCccccccCCC
Confidence 4444444 5554 577899976 8999999984210 000 001335678999999999999999999999999
Q ss_pred CCCCC---CCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHHHHHHHHHhcCccccccccCCCHHHHHH
Q 002419 142 GLEER---EIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSILTRLEQAYCGSIGFEYMHISDREKCNW 218 (925)
Q Consensus 142 ~~~~~---~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~eii~~L~~~Ycg~ig~E~~hi~~~~~~~W 218 (925)
++ .+ ..+++|++++|||+++|||++|.+| +++ +...+||+||+++|+++|||+||+|||||.|+++|+|
T Consensus 277 ~~-~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~-----~~~--~~~~~~l~~~~~~l~~~yc~~ig~e~~~i~~~~~~~w 348 (1113)
T 2xt6_A 277 RL-DNTRFRSHPDLDVNSHGLTLWDLDREFKVD-----GFA--GVQRKKLRDILSVLRDAYCRHVGVEYTHILEPEQQRW 348 (1113)
T ss_dssp CC-CGGGGSCCTTTCSGGGTCCGGGTTSEEEEC-----STT--SSEEEEHHHHHHHHHHHHSSSEEEECTTCSCHHHHHH
T ss_pred CC-CcCCCCCCCCcCHHHcCCChHHhcCccccC-----ccc--CcccCCHHHHHHHHHHhccCCCCcceeccCCHHHhHH
Confidence 98 34 5678999999999999999999987 233 4567899999999999999999999999999999999
Q ss_pred HHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCCCcEEEcCCccc
Q 002419 219 LRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRG 298 (925)
Q Consensus 219 l~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRg 298 (925)
++++||+.. +.+|+|+++++|++|+++|.||+++.++|+++||||++|||++++|++++|+.++++|++|+++||+|||
T Consensus 349 ~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg 427 (1113)
T 2xt6_A 349 IQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRG 427 (1113)
T ss_dssp HHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred HHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccc
Confidence 999999866 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCHHHHHHHhcCCCCCC-CCCCcccCCCCccccccccCCCCCC-CCcceeeeeccccCCcccccceeehh
Q 002419 299 RLNVLGNVVRKPLRQIFSEFSGGTRPV-DEVGLYTGTGDVKYHLGTSYDRPTR-GGKRIHLSLVANPSHLEAVDPVVIGK 376 (925)
Q Consensus 299 rln~La~vlg~p~~~ifaEf~G~~~~~-~~G~g~ggsgDvkyHlg~s~~~~~~-~g~~i~l~l~~npShlg~~~PvA~G~ 376 (925)
|+|+|+|++|+|+.+||+||+|+.+++ +. |+||||||+|++....+. +++.+++++++||||||+++|+|+|+
T Consensus 428 ~~~~La~~~G~~~~~i~ae~~G~~~g~~~~-----g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~ 502 (1113)
T 2xt6_A 428 RLNVLANIVGKPYSQIFSEFEGNLNPSQAH-----GSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGL 502 (1113)
T ss_dssp HHHHHHHTTCCCHHHHSTTC------------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHH
T ss_pred hHHHHHHHhCCCHHHHHHHhcCCCCCCccC-----CCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHH
Confidence 999999999999999999999998876 43 458999999976655444 34379999999999999999999999
Q ss_pred hhhhhhhcCCCCC-----CCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 377 TRAKQYYSNDMDR-----TKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 377 A~A~q~~~~d~~~-----~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
|+|.|+++.+.++ .+.+++|+||||||++||+||||||+|.+.+|.|||+||||+||||||||++.+++++.+++
T Consensus 503 A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~ 582 (1113)
T 2xt6_A 503 VRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCT 582 (1113)
T ss_dssp HHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTT
T ss_pred HHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHH
Confidence 9999997643222 46899999999997559999999999998889899999999999999999887778888999
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHH
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQN 531 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~ 531 (925)
++|++||+|+++|||+|++||++|+++|++|||++++|+|||++|||++|||++|+|+||+|.||++|++++||+.+|++
T Consensus 583 ~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~~~dpi~~~~~ 662 (1113)
T 2xt6_A 583 DVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDTKRGSRKAYTE 662 (1113)
T ss_dssp GGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC-Cccch--hhhhccCCCCcccccccCCCCCChHHHHHHHhhhhc
Q 002419 532 KLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVP-NRRDW--LSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITT 608 (925)
Q Consensus 532 ~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p-~~~~~--~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~ 608 (925)
+|+++|++|++++++++++++++++++++.|++..| .+.+| +.+.|.+ ....+|+++.+.|+.+++++++
T Consensus 663 ~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~t~~~~~~l~~~~~~~~~ 735 (1113)
T 2xt6_A 663 ALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI-------PSKLATAVDKAMLQRIGDAHLA 735 (1113)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CCCCCCHHHHHHHHHHTTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc-------ccCCCCccCHHHHHHHHHhhcc
Confidence 999999999999999999999999999999987544 33333 2234432 1245799999999999999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceeeecCCCceeccCC
Q 002419 609 LPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLD 688 (925)
Q Consensus 609 ~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~ 688 (925)
+|++|++|+++++++++|.+|+++ +.||||++|+|||++||.+|++|||+||||+||||+|||||||||+||..|+||+
T Consensus 736 ~p~~~~~~~~v~~~~~~r~~m~~~-~~i~~a~~e~la~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~ 814 (1113)
T 2xt6_A 736 LPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQ 814 (1113)
T ss_dssp CCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGG
T ss_pred CCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchh
Confidence 999999999999999999999887 7799999999999999999999999999999999999999999999999999999
Q ss_pred Cc------cccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcE
Q 002419 689 HV------MMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLV 762 (925)
Q Consensus 689 ~l------~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv 762 (925)
+| . +++|++||+||||||++++||++|||+.|+++++|||+|||||+|+||+++|||++++++||++++|||
T Consensus 815 ~l~~~~~~~--~~~~p~rv~ds~IsE~~~vg~a~G~A~~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv 892 (1113)
T 2xt6_A 815 LLATNPDGT--PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVV 892 (1113)
T ss_dssp GGGBCTTSC--BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCE
T ss_pred ccccccccc--hhcCCcEEEECCCCHHHHHHHHHHHHhcCCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEE
Confidence 99 7 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEe
Q 002419 763 VMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMS 842 (925)
Q Consensus 763 ~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~ 842 (925)
|++||||+|+||+|||+|+|+|||||+. | ||+||+||||+|+|||||+|+++++++|||||+
T Consensus 893 ~~lp~G~~G~G~~Hs~~~~E~~l~l~~~--------p----------nm~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~ 954 (1113)
T 2xt6_A 893 LLLPHGHEGQGPDHTSGRIERFLQLWAE--------G----------SMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFT 954 (1113)
T ss_dssp EEEECCCSSSCTTSSCCCHHHHHHHCCT--------T----------SCEEECCSSHHHHHHHHHHHHHSSCCCCEEEEE
T ss_pred EEeCCCCCCCChhhhcccHHHHHhcCCC--------C----------CcEEEecCCHHHHHHHHHHHHhccCCCCEEEEe
Confidence 9999999999999999999999999986 3 699999999999999999999998899999999
Q ss_pred cccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCC--CCCCCCCccEEEEecchHHHHHHHHHH
Q 002419 843 PKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNE--HSDLEEGIRRLILCSGKVSSAVCVALY 911 (925)
Q Consensus 843 pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~--~~~~~~~v~rvilcsGkvyydL~~~~~ 911 (925)
||+|||++.++|++++|.+ +.|+++|++... .+.+.++|||+|+|+||+||+|.++.+
T Consensus 955 pk~L~R~~~~~~~~~~~~~-----------~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~~~~~l~aa~~ 1014 (1113)
T 2xt6_A 955 PKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKA 1014 (1113)
T ss_dssp CSGGGSCSSSCBCHHHHHS-----------CCCCSEECCHHHHTSCCCSTTCCEEEEECSTHHHHHHHHHH
T ss_pred chHHhCCCCCCCcccccCC-----------CCccccCCcceeeccccCccccCEEEEEECHHHHHHHHHHH
Confidence 9999999999999988875 679999988642 024678999999999999999998874
No 3
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.2e-173 Score=1573.26 Aligned_cols=744 Identities=45% Similarity=0.754 Sum_probs=658.8
Q ss_pred HHHHHHHHHHHHHHHhcCccccccCCCCCCCC---CCCCCCCcccCCCCcccccceeecCcccccccccCCCCCcCHHHH
Q 002419 115 IQESMRLLLLVRAYQVNGHMKAKLDPLGLEER---EIPDDLDPAFYGFTEADLDREFFLGVWSMAGFLSENRPVQTLRSI 191 (925)
Q Consensus 115 ~~~~~~~~~li~ayr~~GH~~A~ldPL~~~~~---~~~~~L~~~~~g~~~~dl~~~~~~~~~~~~~~~~~~~~~~tl~ei 191 (925)
+.++++|++||+|||.|||+.|+||||++ .+ ..+++|++++|||+++|||++|.++ +++ +...+||+||
T Consensus 5 ~~~~~~~~~li~~yr~~gh~~a~~dpl~~-~~~~~~~~~~l~~~~~g~~~~d~~~~~~~~-----~~~--~~~~~~l~~~ 76 (868)
T 2yic_A 5 EDKNARVIELIAAYRNRGHLMADIDPLRL-DNTRFRSHPDLDVNSHGLTLWDLDREFKVD-----GFA--GVQRKKLRDI 76 (868)
T ss_dssp --CHHHHHHHHHHHHHHGGGTSCCCTTCC-CTHHHHC-----------CCSTTSSBC---------------CCCBHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccceecCCCCC-CCCCCCCCCccCHHhcCCChHHhCCeeccC-----Ccc--CcCcCCHHHH
Confidence 35788999999999999999999999998 44 4678999999999999999999987 333 4567999999
Q ss_pred HHHHHHHhcCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccch
Q 002419 192 LTRLEQAYCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETL 271 (925)
Q Consensus 192 i~~L~~~Ycg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~ 271 (925)
+++|+++|||+||+|||||.|+++|+|++++||+.. +.+|+|+++++|++|+++|.||+|+.++|+++||||++|||++
T Consensus 77 ~~~l~~~yc~~ig~e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g~~G~Ea~ 155 (868)
T 2yic_A 77 LSVLRDAYCRHVGVEYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSLEGAETV 155 (868)
T ss_dssp HHHHHHHHSSSEEEECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCCTTCTTH
T ss_pred HHHHHHhhcCCCCcceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHH
Confidence 999999999999999999999999999999999876 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCC-CCCCcccCCCCccccccccCCCCCC
Q 002419 272 IPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPV-DEVGLYTGTGDVKYHLGTSYDRPTR 350 (925)
Q Consensus 272 i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~-~~G~g~ggsgDvkyHlg~s~~~~~~ 350 (925)
+||++++|+.++++|++|+|+||+||||+|+|+|++|+|+.+||+||+|+.+++ +. |+||||||+|++....+.
T Consensus 156 ~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~-----g~gdv~~Hlg~~~~~~~~ 230 (868)
T 2yic_A 156 IPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAH-----GSGDVKYHLGATGTYIQM 230 (868)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC-----------------CGGGTCCEEEEEECS
T ss_pred HHHHHHHHHHhhhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccC-----CCCCccccCCcccccccc
Confidence 999999999999999999999999999999999999999999999999998876 43 458999999976655444
Q ss_pred -CCcceeeeeccccCCcccccceeehhhhhhhhhcCCCCC-----CCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcc
Q 002419 351 -GGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDR-----TKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIG 424 (925)
Q Consensus 351 -~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~-----~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~G 424 (925)
+++.+++++++||||||+++|+|+|+|+|.|+++.+.++ .+.+++|+||||||++||+||||||+|.+.+|.||
T Consensus 231 ~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g 310 (868)
T 2yic_A 231 FGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTG 310 (868)
T ss_dssp SSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCS
T ss_pred CCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCC
Confidence 343799999999999999999999999999997643222 56899999999998559999999999988888899
Q ss_pred cEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCC
Q 002419 425 GTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE 504 (925)
Q Consensus 425 GvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne 504 (925)
|+||||+||||||||++.+++++.+++++|++||+|+++|||+|++||++|+++|++|||++++|+|||++|||++|||+
T Consensus 311 ~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~ 390 (868)
T 2yic_A 311 GTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNE 390 (868)
T ss_dssp CCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSST
T ss_pred CeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCc
Confidence 99999999999999988778888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCC-Cccch--hhhhccCCC
Q 002419 505 IDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVP-NRRDW--LSAYWSGFK 581 (925)
Q Consensus 505 ~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p-~~~~~--~~~~w~~~~ 581 (925)
+|+|+||+|.||+.|++++||+.+|+++|+++|++|++++++++++++++++++++.|++..| .+.+| +...|.+
T Consensus 391 ~D~p~~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~ee~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~~~~~~~~~~-- 468 (868)
T 2yic_A 391 GDDPSMTQPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHEIEPSESVEADQQI-- 468 (868)
T ss_dssp TCCGGGTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred ccccccCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccc--
Confidence 999999999999999989999999999999999999999999999999999999999987433 32233 2233422
Q ss_pred CcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecc
Q 002419 582 SPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQ 661 (925)
Q Consensus 582 ~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~Gq 661 (925)
....+|+++.+.|+.++++++++|++|++|+++++++++|.+|+++ +.||||++|+|||++||.+|++|||+||
T Consensus 469 -----~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~v~~~~~~R~~m~~~-~~i~~a~~e~la~~~l~~~~~~V~~~G~ 542 (868)
T 2yic_A 469 -----PSKLATAVDKAMLQRIGDAHLALPEGFTVHPRVRPVLEKRREMAYE-GRIDWAFAELLALGSLIAEGKLVRLSGQ 542 (868)
T ss_dssp --------CCCCCCHHHHHHHHHHTTCCCTTCCCCTTTHHHHHHHHHHHHH-CCBCHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred -----ccCCCCccCHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1245799999999999999999999999999999999999999987 7799999999999999999999999999
Q ss_pred cCCCcccccccceeeecCCCceeccCCCc------cccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhh
Q 002419 662 DVERGTFSHRHSVLHDQETGEQYCPLDHV------MMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGD 735 (925)
Q Consensus 662 Dv~rGtF~~RHav~~dq~t~~~y~pL~~l------~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgD 735 (925)
||+||||+|||||||||+||..|+||++| . +++|++||+||||||++++||++|||+.|+++++|||+||||
T Consensus 543 Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~--~~~~p~Rv~ds~IsE~~~vG~a~G~A~~G~~~~~i~eaqf~d 620 (868)
T 2yic_A 543 DTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGT--PTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGD 620 (868)
T ss_dssp TTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSC--BCSCEEEEEECCSCSHHHHHHHHHHHHHCTTSEEEEECSSGG
T ss_pred cCCccchhhcchhccccCCCceecchhhhcccccch--hhcCCcEEEECCccHHHHHHHHHHHHccCCCCceEEEEehHH
Confidence 99999999999999999999999999999 8 789999999999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEE
Q 002419 736 FANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVN 815 (925)
Q Consensus 736 F~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~ 815 (925)
|+|+||++||||++++++||++++||||++||||+|+||+|||+|+|+|||||+. | ||+||+
T Consensus 621 F~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G~Gp~Hs~~~~E~~l~l~~~--------p----------nm~V~~ 682 (868)
T 2yic_A 621 FVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFLQLWAE--------G----------SMTIAM 682 (868)
T ss_dssp GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSSSCTTSSCCCHHHHHHHCCT--------T----------SCEEEC
T ss_pred HHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCCChhhcCCcHHHHHhcCCC--------C----------CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999986 3 699999
Q ss_pred cCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCC--CCCCCCCcc
Q 002419 816 VTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNE--HSDLEEGIR 893 (925)
Q Consensus 816 pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~--~~~~~~~v~ 893 (925)
||||+|+|||||+|+++++++|||||+||+|||++.+++++++|.+ +.|+++|++... .+.+.++||
T Consensus 683 Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~-----------~~f~~~ig~~~~~~~l~~g~dv~ 751 (868)
T 2yic_A 683 PSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTE-----------SKFRSVLEEPMYTDGEGDRNKVT 751 (868)
T ss_dssp CCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHS-----------CCCCSEECCHHHHTSSCCGGGCC
T ss_pred eCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCC-----------CCceecCCcceeecccccCCcee
Confidence 9999999999999999988999999999999999999999988875 679999988642 024678899
Q ss_pred EEEEecchHHHHHHHHHH
Q 002419 894 RLILCSGKVSSAVCVALY 911 (925)
Q Consensus 894 rvilcsGkvyydL~~~~~ 911 (925)
|+|||+||+||+|.++.+
T Consensus 752 r~Ii~~G~~~~~l~aa~~ 769 (868)
T 2yic_A 752 RLLLTSGKIYYELAARKA 769 (868)
T ss_dssp EEEEECSTHHHHHHHHHH
T ss_pred EEEEEecHHHHHHHHHHH
Confidence 999999999999998874
No 4
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=3.4e-61 Score=545.31 Aligned_cols=333 Identities=15% Similarity=0.187 Sum_probs=296.9
Q ss_pred CccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHH
Q 002419 201 GSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMK 276 (925)
Q Consensus 201 g~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~ 276 (925)
.++++++++|.|++.+ |+. +..+.+++|+++++|+.|+++|.||+++.++|++ |+++ ++|||++++|++
T Consensus 47 ~~~~~~~~~~ld~~g~-~~~-----~~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~q-gr~~~~~~~~GqEA~~vg~~ 119 (407)
T 1qs0_A 47 ADLSYSLVRVLDEQGD-AQG-----PWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQ-KKMSFYMQSLGEEAIGSGQA 119 (407)
T ss_dssp HHHHTSCBCCBCTTSC-BCS-----GGGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSSCCCCCTTTHHHHHHHH
T ss_pred hccCCCeEEEECCCCC-CCC-----cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CccccCcCCCChHHHHHHHH
Confidence 3457789999999876 432 1235799999999999999999999999999975 5554 699999999999
Q ss_pred HHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCccee
Q 002419 277 EMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIH 356 (925)
Q Consensus 277 ~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~ 356 (925)
.+|+. +|+|+ |+||+|+++|++ |+++.+||+||+|+..+.++| ++++||++. .+
T Consensus 120 ~al~~------~D~v~-~~yR~~~~~l~~--g~~~~~i~~el~g~~~~~~~G------~g~~~h~~~-~~---------- 173 (407)
T 1qs0_A 120 LALNR------TDMCF-PTYRQQSILMAR--DVSLVEMICQLLSNERDPLKG------RQLPIMYSV-RE---------- 173 (407)
T ss_dssp HHSCT------TSEEE-CCSSCHHHHHHT--TCCHHHHHHHHHTCTTCTTTT------CSCTTCCCB-GG----------
T ss_pred HhcCC------CCEEE-ecccchHHHHhc--CCCHHHHHHHHhCCCCCCCCC------CCceeecch-hc----------
Confidence 88864 89999 899999999987 999999999999998877654 235699973 43
Q ss_pred eeeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC
Q 002419 357 LSLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN 433 (925)
Q Consensus 357 l~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN 433 (925)
+++.+++||||+++|+|+|+|+|.++++.+ .++||++|||+++ ||.++|+||+| +|| +||||+||
T Consensus 174 ~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~Vv~NN 241 (407)
T 1qs0_A 174 AGFFTISGNLATQFVQAVGWAMASAIKGDT-----KIASAWIGDGATA-ESDFHTALTFAHVYRAP------VILNVVNN 241 (407)
T ss_dssp GTBCCCCSSSSHHHHHHHHHHHHHHHTTCC-----CCEEEEEETGGGG-SHHHHHHHHHHHHHTCC------EEEEEEEC
T ss_pred cCccccccccccchhHHHHHHHHHHHhCCC-----CEEEEEECCchhh-cChHHHHHHHHHHHCcC------EEEEEECC
Confidence 245778899999999999999999987655 8999999999997 99999999999 899 99999999
Q ss_pred CcccccCCCCCc-CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-Cc
Q 002419 434 QVAFTTDPMSGR-SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FT 511 (925)
Q Consensus 434 q~g~tT~~~~~r-ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-yt 511 (925)
+||++|+...+. ...+++++|++||+|+++|||+|+++|+.|++.|++++|++++|+|||++|||.+|||++|+|+ ||
T Consensus 242 ~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr 321 (407)
T 1qs0_A 242 QWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR 321 (407)
T ss_dssp SEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTS
T ss_pred CcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccC
Confidence 999999876554 4578899999999999999999999999999999999999999999999999999999999886 89
Q ss_pred CHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhc------C-CCccchhhhhccC
Q 002419 512 QPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDY------V-PNRRDWLSAYWSG 579 (925)
Q Consensus 512 qp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~------~-p~~~~~~~~~w~~ 579 (925)
+++|+++|+ .+||+.+|+++|+++|++|++++++|+++++++|++++++|++. + |++.++++++|++
T Consensus 322 ~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~~~~~p~p~~~~~~~~vy~~ 395 (407)
T 1qs0_A 322 PADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKE 395 (407)
T ss_dssp CTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCCCCSSGGGSSSSSS
T ss_pred CHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHHhhccCC
Confidence 999999997 58999999999999999999999999999999999999999873 3 7788899999975
No 5
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=2.8e-61 Score=545.49 Aligned_cols=360 Identities=15% Similarity=0.190 Sum_probs=298.6
Q ss_pred cccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCccchHHHHHHHH
Q 002419 203 IGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMF 279 (925)
Q Consensus 203 ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Kr---fg~eG~Ea~i~gl~~~l 279 (925)
-++++++|.|++.+ |+.. ...+.+++|+++++|+.|+++|.||+++.++|+++|. ++++|||++++|+..+|
T Consensus 29 ~~~~~~~~l~~~g~-~~~~----~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~~~al 103 (400)
T 2bfd_A 29 SGIPIYRVMDRQGQ-IINP----SEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAAL 103 (400)
T ss_dssp SCSCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHHHHTS
T ss_pred CCCCeeEEECCCCC-CCCc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHHHHhc
Confidence 35688999999987 3332 2236799999999999999999999999999998774 47799999999998887
Q ss_pred HHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeee
Q 002419 280 DRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSL 359 (925)
Q Consensus 280 ~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l 359 (925)
+. +|+|++ +||||+.++++ |+++.++|+||+|+.+++++| ++++||++ +.+ +++
T Consensus 104 ~~------~D~v~~-~yR~~~~~~~~--G~~~~~~l~e~~g~~~g~~~G------~~~~~H~~-~~~----------~~~ 157 (400)
T 2bfd_A 104 DN------TDLVFG-QAREAGVLMYR--DYPLELFMAQCYGNISDLGKG------RQMPVHYG-CKE----------RHF 157 (400)
T ss_dssp CT------TSEEEC-CSCCHHHHHHT--TCCHHHHHHHHHTCTTCTTTT------CSCSSCCC-BTT----------TTB
T ss_pred CC------CCEEEe-cCcCHHHHHHc--CCCHHHHHHHhcCCCCCCCCC------CCCCcCCc-ccc----------cCc
Confidence 64 899995 99999988877 999999999999998887653 23679997 332 235
Q ss_pred ccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcc
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVA 436 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g 436 (925)
.+++|+||.++|+|+|+|+|.++++.+ .++||++|||+++ +|+|||+||+| +|| +||||+||+||
T Consensus 158 ~~~~g~lG~~lp~AvG~AlA~~~~~~~-----~~vv~~~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~~ 225 (400)
T 2bfd_A 158 VTISSPLATQIPQAVGAAYAAKRANAN-----RVVICYFGEGAAS-EGDAHAGFNFAATLECP------IIFFCRNNGYA 225 (400)
T ss_dssp CCCCSSTTTHHHHHHHHHHHHHHHTCC-----CCEEEEEETTGGG-SHHHHHHHHHHHHTTCC------EEEEEEECSEE
T ss_pred cccCccccccccHHHHHHHhhhhhCCC-----CeEEEEECchhhh-cChHHHHHHHHHHHCcC------EEEEEECCcee
Confidence 778899999999999999999987655 8899999999997 99999999999 898 99999999999
Q ss_pred cccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-CcCHHH
Q 002419 437 FTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKM 515 (925)
Q Consensus 437 ~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-ytqp~e 515 (925)
++|+...+++..+++++|++||+|+++|||+|+++|+.|++.|++++|++++|+|||++|||++|||++|+|+ ||+|+|
T Consensus 226 i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e 305 (400)
T 2bfd_A 226 ISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDE 305 (400)
T ss_dssp TTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC------------
T ss_pred eeecccccCCCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHH
Confidence 9998888887889999999999999999999999999999999999999999999999999999999999976 999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCCCCcccccccCCCCC
Q 002419 516 YKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGFKSPEQLSRIRNTGV 594 (925)
Q Consensus 516 y~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~~~~~~~~~~~~t~v 594 (925)
++.|++++||+.+|+++|++.|++|++++++++++++++|+++++.|++.+ |+..+.++++|+.. ++.
T Consensus 306 ~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~-----------~~~ 374 (400)
T 2bfd_A 306 VNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEM-----------PAQ 374 (400)
T ss_dssp -------CCHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSC-----------CHH
T ss_pred HHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhhccC-----------CHH
Confidence 999988889999999999999999999999999999999999999988766 67777777888642 233
Q ss_pred ChHHHHHHHhhhhcCCCCCCcc
Q 002419 595 KPEILKNVGKAITTLPENFKPH 616 (925)
Q Consensus 595 ~~~~l~~i~~~~~~~P~~f~~h 616 (925)
..++++.+.+.+...|++|..+
T Consensus 375 l~~q~~~~~~~~~~~~~~~~~~ 396 (400)
T 2bfd_A 375 LRKQQESLARHLQTYGEHYPLD 396 (400)
T ss_dssp HHHHHHHHHHHHHHHGGGSCGG
T ss_pred HHHHHHHHHHHHHhCCCcCCcc
Confidence 5667888888888888888644
No 6
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=4.4e-60 Score=529.63 Aligned_cols=310 Identities=17% Similarity=0.247 Sum_probs=278.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLG 304 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La 304 (925)
+.+|+|+++++|+.|+++|.||+++..+|+++|..| ++|||++++|++.+|++ +|+++ ++||+|+.+++
T Consensus 29 ~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~------~D~i~-~~yR~~~~~~~ 101 (365)
T 2ozl_A 29 TVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINP------TDHLI-TAYRAHGFTFT 101 (365)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCT------TSEEE-CCSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCC------CCEEe-hHHHHHHHHHh
Confidence 468999999999999999999999999999888755 49999999999999986 79998 58999998887
Q ss_pred HhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhc
Q 002419 305 NVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYS 384 (925)
Q Consensus 305 ~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~ 384 (925)
+ |+|+.+||+||+|+.++.++|+ ||+ ||++ +. + +.+..+++|+++|+|+|+|+|.++++
T Consensus 102 ~--G~~~~~i~~e~~g~~~g~~~g~--gg~----~H~~-~~--~----------~~~~~g~~G~~lp~A~G~A~A~~~~~ 160 (365)
T 2ozl_A 102 R--GLSVREILAELTGRKGGCAKGK--GGS----MHMY-AK--N----------FYGGNGIVGAQVPLGAGIALACKYNG 160 (365)
T ss_dssp T--TCCHHHHHHHHTTCTTSTTTTS--SCT----TCCC-BT--T----------BCCCCCSTTTHHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHcCCCCCCCCCC--CCC----CCcC-cc--c----------cCCCcchhhhhhHHHHHHHHHHHhcC
Confidence 7 9999999999999999888653 555 8984 32 2 24455889999999999999999876
Q ss_pred CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccE
Q 002419 385 NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPI 461 (925)
Q Consensus 385 ~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~ 461 (925)
.+ .++||++||||++ ||+++|+||+| +|| +||||+||+||++|+......++++.. +++|+|+
T Consensus 161 ~~-----~~vv~~~GDGa~~-~G~~~Ealn~A~~~~lp------vi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~ 226 (365)
T 2ozl_A 161 KD-----EVCLTLYGDGAAN-QGQIFEAYNMAALWKLP------CIFICENNRYGMGTSVERAAASTDYYK--RGDFIPG 226 (365)
T ss_dssp CC-----CCEEEEEETTGGG-CHHHHHHHHHHHHTTCC------EEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCE
T ss_pred CC-----ceEEEEECchhhh-ccHHHHHHHHHHHHCcC------EEEEEECCCcccCCCcccccCCCCHHH--HhCCCCE
Confidence 55 8999999999987 99999999999 899 999999999999996544433344443 7899999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-CcCHHHHHHHHhCCCHHHHHHHHHHHcCCCC
Q 002419 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPKMYKIIRSHPSSLEIYQNKLLECQHVT 540 (925)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t 540 (925)
++|||+|+++|+.|+++|++++|++++|+|||++|||++|||++|++. ||+|+||+.|++++||+.+|+++|+++|++|
T Consensus 227 ~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~ 306 (365)
T 2ozl_A 227 LRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLAS 306 (365)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999874 9999999999878999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccCC
Q 002419 541 QEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSGF 580 (925)
Q Consensus 541 ~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~~ 580 (925)
++++++|+++++++|+++++.|++.+ |++.++++++|++.
T Consensus 307 ~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~ 347 (365)
T 2ozl_A 307 VEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSD 347 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCC
Confidence 99999999999999999999999877 88889999999764
No 7
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=3e-59 Score=523.73 Aligned_cols=324 Identities=17% Similarity=0.217 Sum_probs=285.3
Q ss_pred ccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----ccCccchHHHHHH
Q 002419 202 SIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFG----LEGGETLIPGMKE 277 (925)
Q Consensus 202 ~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg----~eG~Ea~i~gl~~ 277 (925)
+-.+++++|.|++.+ |+.. ...+.+|+|+++++|+.|+++|.||+++.+.+ ++|++| ++|||++++|++.
T Consensus 17 ~~~~~~~~~l~~~g~-~~~~----~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~-~qgr~g~~~~~~G~Ea~~vg~~~ 90 (368)
T 1w85_A 17 AEQFPTFQILNEEGE-VVNE----EAMPELSDEQLKELMRRMVYTRILDQRSISLN-RQGRLGFYAPTAGQEASQIASHF 90 (368)
T ss_dssp HHTCCEECSBCTTSC-BSCG----GGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCSCCCCTTCHHHHHHHHH
T ss_pred CCCCCeeEEECCCCC-CCCc----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCCHHHHHHHHHH
Confidence 334589999999987 4432 22357999999999999999999999996666 455668 6999999999999
Q ss_pred HHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceee
Q 002419 278 MFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHL 357 (925)
Q Consensus 278 ~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l 357 (925)
+|+. +|++++ +||+|+.++++ |+++..+|+||+|+.+ |++ ||. + +
T Consensus 91 ~l~~------~D~v~~-~~R~~~~~~~~--G~~~~~~~~el~G~~~--------G~~----~h~----~----------~ 135 (368)
T 1w85_A 91 ALEK------EDFILP-GYRDVPQIIWH--GLPLYQAFLFSRGHFH--------GNQ----IPE----G----------V 135 (368)
T ss_dssp TCCT------TCEEEC-CSSCHHHHHHT--TCCHHHHHHHHHTCGG--------GGC----CCT----T----------C
T ss_pred hcCC------cCEEEe-cchhHHHHHhc--CCCHHHHHHHHCCCCC--------CCC----CCc----c----------c
Confidence 9874 899997 59999998877 9999999999999753 234 562 1 3
Q ss_pred eeccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC
Q 002419 358 SLVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ 434 (925)
Q Consensus 358 ~l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq 434 (925)
++.+++||+|+++|+|+|+|+|.++++.+ .++||++||||++ +|+++|+||+| +|| +||||+||+
T Consensus 136 ~~~~~~g~lG~~lp~AvG~A~A~~~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~ 203 (368)
T 1w85_A 136 NVLPPQIIIGAQYIQAAGVALGLKMRGKK-----AVAITYTGDGGTS-QGDFYEGINFAGAFKAP------AIFVVQNNR 203 (368)
T ss_dssp CBCCCCCSTTHHHHHHHHHHHHHHHTTCS-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCC------EEEEEEECS
T ss_pred ccCCCccccCccccHHHHHHHHhHhhCCC-----CeEEEEEchhhhh-hcHHHHHHHHHHHHCcC------EEEEEEcCC
Confidence 46788899999999999999999987655 8899999999999 99999999999 999 999999999
Q ss_pred cccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC-CCCCCC-CcC
Q 002419 435 VAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN-EIDEPS-FTQ 512 (925)
Q Consensus 435 ~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn-e~Ddp~-ytq 512 (925)
||++|+...+++.++++++|++||+|+++|||+|+++|+.|++.|++++|++++|+|||++|||++||| ++|||+ ||+
T Consensus 204 ~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~ 283 (368)
T 1w85_A 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRS 283 (368)
T ss_dssp EETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------C
T ss_pred ccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCC
Confidence 999998887787889999999999999999999999999999999999999999999999999999999 999987 667
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002419 513 PKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSG 579 (925)
Q Consensus 513 p~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 579 (925)
++||+.|++ +||+.+|+++|+++|++|++++++|++++++++++++++|++.+ |++.++++++|++
T Consensus 284 ~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 350 (368)
T 1w85_A 284 KELENEWAK-KDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEE 350 (368)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSS
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccCC
Confidence 777999975 99999999999999999999999999999999999999999877 8888999999964
No 8
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=7e-56 Score=496.58 Aligned_cols=332 Identities=17% Similarity=0.199 Sum_probs=298.0
Q ss_pred cccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCccchHHHHHHHH
Q 002419 203 IGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLATKWTTAKR---FGLEGGETLIPGMKEMF 279 (925)
Q Consensus 203 ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Kr---fg~eG~Ea~i~gl~~~l 279 (925)
-.+++++|.|++.+ |+.. ..+.+|+++++++|+.|+++|.||.++..++.+++. +++.|+|++++++..++
T Consensus 11 ~~~~~~~~l~~~g~-~~~~-----~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l 84 (367)
T 1umd_A 11 FTEEPIRLIGEEGE-WLGD-----FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAI 84 (367)
T ss_dssp SCSSCBCCBCTTSC-BCCS-----SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHS
T ss_pred CCCCeEEEECCCCC-CCCc-----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHc
Confidence 34678999999987 4332 235799999999999999999999999999998874 56699999999999988
Q ss_pred HHHhhcCCC-cEEEcCCccchHHHHHHhcCCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeee
Q 002419 280 DRAADLGVE-SIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLS 358 (925)
Q Consensus 280 ~~a~~~gv~-D~vigm~HRgrln~La~vlg~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~ 358 (925)
++ + |+++ ++||+++.++++ |+++.++|++|+|+.++++.| +++++|++ +.+. +
T Consensus 85 ~~------~rD~i~-~s~r~~~~~~~~--G~~~~~~l~~~~g~~~g~~~G------~~~~~h~~-~~~~----------~ 138 (367)
T 1umd_A 85 RP------GFDWVF-PYYRDHGLALAL--GIPLKELLGQMLATKADPNKG------RQMPEHPG-SKAL----------N 138 (367)
T ss_dssp CT------TTSEEE-CCTTTHHHHHHH--TCCHHHHHHHHHTBTTCTTTT------CSCSSCCC-BTTT----------T
T ss_pred CC------CCcEEE-eCcHHHHHHHHc--CCCHHHHHHHHhCCCCCCCCC------CCCCCCCc-cccc----------C
Confidence 75 5 9999 799998888877 999999999999999887653 23478997 3332 3
Q ss_pred eccccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCc
Q 002419 359 LVANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV 435 (925)
Q Consensus 359 l~~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~ 435 (925)
+.++++|+|+++|+|+|+|+|.|+.+.+ .++||++|||+++ +|+++||||+| +|| +||||.||+|
T Consensus 139 ~~~~~g~lG~~l~~a~G~A~a~k~~~~~-----~~vv~i~GDGa~~-~G~~~Eal~~A~~~~lp------vi~vv~NN~~ 206 (367)
T 1umd_A 139 FFTVASPIASHVPPAAGAAISMKLLRTG-----QVAVCTFGDGATS-EGDWYAGINFAAVQGAP------AVFIAENNFY 206 (367)
T ss_dssp BCCCCSSTTTTHHHHHHHHHHHHHTTCC-----CCEEEEEETGGGG-SHHHHHHHHHHHHTTCS------EEEEEEECSE
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHhCCC-----CeEEEEEcccccc-cCcHHHHHHHHHHhCcC------EEEEEecCCe
Confidence 4668899999999999999999987655 7899999999997 99999999999 899 9999999999
Q ss_pred ccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-CcCHH
Q 002419 436 AFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS-FTQPK 514 (925)
Q Consensus 436 g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~-ytqp~ 514 (925)
|++|+....++..+++++|++||+|+++|||+|+++|++|++.|+++++++++|+|||++|||.+|||++|+|+ ||+++
T Consensus 207 gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~ 286 (367)
T 1umd_A 207 AISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKE 286 (367)
T ss_dssp ETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHH
T ss_pred eeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHH
Confidence 99998766677789999999999999999999999999999999999999999999999999999999999886 89999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcC-CCccchhhhhccC
Q 002419 515 MYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYV-PNRRDWLSAYWSG 579 (925)
Q Consensus 515 ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~-p~~~~~~~~~w~~ 579 (925)
|+++|++ +||+.+|+++|+++|++|++++++|++++++++++++++|++.+ |++.++++++|++
T Consensus 287 e~~~~~~-~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~ 351 (367)
T 1umd_A 287 EVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAE 351 (367)
T ss_dssp HHHHHHT-TCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSS
T ss_pred HHHHHHc-CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCC
Confidence 9999975 89999999999999999999999999999999999999999877 8888999999964
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-40 Score=392.73 Aligned_cols=452 Identities=12% Similarity=0.127 Sum_probs=303.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccchHHHHHHHHHHHhhcCCCcEEE-cCCccchHHHHHHhc
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVI-GMPHRGRLNVLGNVV 307 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~~~Krfg~eG~Ea~i~gl~~~l~~a~~~gv~D~vi-gm~HRgrln~La~vl 307 (925)
..++.+++.++++.| |.+...+..+ ..|-..+..|+|.+.+++...++. .+|+++ ...||+.++.+..
T Consensus 21 ~~l~~~~l~~l~~~i---R~~~~~~~~~-~~Gh~~~~lg~~~~~~~l~~~~~~-----~~D~~v~~~gH~~y~~~~l~-- 89 (621)
T 2o1s_A 21 RLLPKESLPKLCDEL---RRYLLDSVSR-SSGHFASGLGTVELTVALHYVYNT-----PFDQLIWDVGHQAYPHKILT-- 89 (621)
T ss_dssp TTSCGGGHHHHHHHH---HHHHHHHSCG-GGCTHHHHHTTHHHHHHHHHHSCT-----TTSEEEESSSTTCHHHHHTT--
T ss_pred hhCCHHHHHHHHHHH---HHHHHHHHhh-cCCCcCCChhHHHHHHHHHhccCC-----CCCEEEEeCchHHHHHHHHh--
Confidence 367888999998888 4333222221 122222359999999988776652 256655 3589998877755
Q ss_pred CCCHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhhhhcCCC
Q 002419 308 RKPLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDM 387 (925)
Q Consensus 308 g~p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q~~~~d~ 387 (925)
|. .+++ ..+.. ++|. .-|. +.. ..+ + .....+|+|.++|.|+|+|+|.++++.+
T Consensus 90 G~-~~~~-~~~r~----------~~g~---~g~~--~~~-~s~-~------~~~~~G~~G~gl~~A~G~AlA~~~~~~~- 143 (621)
T 2o1s_A 90 GR-RDKI-GTIRQ----------KGGL---HPFP--WRG-ESE-Y------DVLSVGHSSTSISAGIGIAVAAEKEGKN- 143 (621)
T ss_dssp TT-GGGG-GGTTS----------TTSC---CSSC--CTT-TCT-T------CCSCCSSSSCHHHHHHHHHHHHHHHTSC-
T ss_pred CC-Hhhh-hcccc----------cCCC---CCCC--CCC-CCC-C------CccCCcccchHHHHHHHHHHHHHHhCCC-
Confidence 65 1111 11110 1111 0121 110 000 0 0123588999999999999999987765
Q ss_pred CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcCc-----------------
Q 002419 388 DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRSS----------------- 447 (925)
Q Consensus 388 ~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss----------------- 447 (925)
..+||++|||+++ +|.++|+||+| ++| +|+||.||+|+++++...+...
T Consensus 144 ----~~Vv~v~GDG~~~-~G~~~EaL~~A~~~~~p------li~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~ 212 (621)
T 2o1s_A 144 ----RRTVCVIGDGAIT-AGMAFEAMNHAGDIRPD------MLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGG 212 (621)
T ss_dssp ----CCEEEEEETTGGG-SHHHHHHHHHHHHHCCS------EEEEEEECC------------------------------
T ss_pred ----CeEEEEEchhhhh-ccHHHHHHHHHHhhCCC------EEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHH
Confidence 7899999999998 99999999999 999 9999999999999875432100
Q ss_pred c-----------------c-------HHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCC
Q 002419 448 Q-----------------Y-------CTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH 502 (925)
Q Consensus 448 ~-----------------~-------~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GH 502 (925)
. + ...++++||+.++ .|||+|++++..|.+.|.+ .++|+||++.|+|.+||
T Consensus 213 ~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~ 288 (621)
T 2o1s_A 213 KKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGY 288 (621)
T ss_dssp --------------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCC
T ss_pred HHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCC
Confidence 0 0 1478999999999 9999999999998888764 57999999999999999
Q ss_pred CCCCCCCCcCHHHHHHHHhCCCH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCC
Q 002419 503 NEIDEPSFTQPKMYKIIRSHPSS-LEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFK 581 (925)
Q Consensus 503 ne~Ddp~ytqp~ey~~i~~~~dp-i~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~ 581 (925)
+...+. | ..| |.-+ ...
T Consensus 289 ~~~e~~----~---~~~--H~~~~f~~----------------------------------------------------- 306 (621)
T 2o1s_A 289 EPAEKD----P---ITF--HAVPKFDP----------------------------------------------------- 306 (621)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ChhhcC----c---hhc--cCCCCCCC-----------------------------------------------------
Confidence 833210 1 122 1111 000
Q ss_pred CcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecc
Q 002419 582 SPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQ 661 (925)
Q Consensus 582 ~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~Gq 661 (925)
++++. . + .......|..+...++.+++.++++|.+.++
T Consensus 307 ---------~~~~~---------------~--------------~----~~~~~~~~~~~~~~~l~~~~~~d~~v~~~~~ 344 (621)
T 2o1s_A 307 ---------SSGCL---------------P--------------K----SSGGLPSYSKIFGDWLCETAAKDNKLMAITP 344 (621)
T ss_dssp -----------------------------------------------------CCBHHHHHHHHHHHHHHHCTTEEEEES
T ss_pred ---------CcCcc---------------c--------------c----cccchHHHHHHHHHHHHHHHhhCcCEEEEeC
Confidence 00000 0 0 0011256777777788899999999999999
Q ss_pred cCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHH
Q 002419 662 DVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQ 741 (925)
Q Consensus 662 Dv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq 741 (925)
|+..|+ +. .++. ++| +.|++|++|||.+++|+++|+|+.|.+|++ ++ |++|+..|.
T Consensus 345 d~~~~~-~~-----------------~~~~--~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~--~~-~~~F~~~a~ 400 (621)
T 2o1s_A 345 AMREGS-GM-----------------VEFS--RKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIV--AI-YSTFLQRAY 400 (621)
T ss_dssp SCTTTT-TC-----------------HHHH--HHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEE--EE-ETTGGGGGH
T ss_pred cccCCc-Ch-----------------HHHH--HhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEE--Ee-hHhHHHHHH
Confidence 997652 22 4676 677 789999999999999999999999999966 98 999998777
Q ss_pred HHHHHHHHhhhhhhCCcCCcEEEcCc-cCCC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCCh
Q 002419 742 VIFDQFVNSGESKWLRQSGLVVMLPH-GYDG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTP 819 (925)
Q Consensus 742 ~~idq~i~~~~~kw~~~~~lv~~lPh-G~~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstp 819 (925)
||++.... ....|+|++++| |+.| .||+||+. |.. .++.++|| |+|+.|+||
T Consensus 401 ---dqi~~~~a---~~~~pvv~~~~~~g~~g~~G~tH~~~--~d~--------~~~~~iP~----------l~v~~P~d~ 454 (621)
T 2o1s_A 401 ---DQVLHDVA---IQKLPVLFAIDRAGIVGADGQTHQGA--FDL--------SYLRCIPE----------MVIMTPSDE 454 (621)
T ss_dssp ---HHHHHTTT---TTTCCCEEEEESCBCCCTTCGGGCBC--SHH--------HHTTTSTT----------CEEECCSSH
T ss_pred ---HHHHHHHH---hcCCCEEEEEECCccCCCCCCccCch--HHH--------HHHhcCCC----------CEEEecCCH
Confidence 55554322 146899999999 5466 69999987 321 23567886 999999999
Q ss_pred hHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEec
Q 002419 820 ANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCS 899 (925)
Q Consensus 820 a~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcs 899 (925)
.+++++|+.+++. .++|++|++||..+... ..+...++ +-|.+..+.++ -+-+|+|+
T Consensus 455 ~e~~~~l~~a~~~-~~~Pv~i~~~r~~~~~~-~~~~~~~~-----------~~G~~~~~~~g----------~dv~iva~ 511 (621)
T 2o1s_A 455 NECRQMLYTGYHY-NDGPSAVRYPRGNAVGV-ELTPLEKL-----------PIGKGIVKRRG----------EKLAILNF 511 (621)
T ss_dssp HHHHHHHHHHHHC-CSSCEEEECCSSBCCCC-CCCCCCCC-----------CTTCCEEEECC----------SSEEEEEE
T ss_pred HHHHHHHHHHHHc-CCCCEEEEeCCCCCCCC-CCCccccc-----------cCCceEEeecC----------CCEEEEEe
Confidence 9999999999975 37899999999877431 11110122 22555443321 13499999
Q ss_pred chHHHHHHHH
Q 002419 900 GKVSSAVCVA 909 (925)
Q Consensus 900 GkvyydL~~~ 909 (925)
|..++..+++
T Consensus 512 G~~~~~a~~A 521 (621)
T 2o1s_A 512 GTLMPEAAKV 521 (621)
T ss_dssp STTHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999988887
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.4e-37 Score=370.31 Aligned_cols=449 Identities=12% Similarity=0.131 Sum_probs=307.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccccCccchHHHHHHHHHHHhhcC-CCcEEEcCCccchH---HH
Q 002419 229 MQYNRQRREVILDRLVWSTQFENFLATKWT--TAKRFGLEGGETLIPGMKEMFDRAADLG-VESIVIGMPHRGRL---NV 302 (925)
Q Consensus 229 ~~ls~e~~~~iy~~m~~ar~fE~~l~~~~~--~~Krfg~eG~Ea~i~gl~~~l~~a~~~g-v~D~vigm~HRgrl---n~ 302 (925)
..++.+++.++++.| |.+ +..... .|-..+..|+ +.+..+|-.. .. .+|+++. . |||. +.
T Consensus 23 ~~l~~~~l~~l~~~i---R~~---~~~~~~~~~Gh~~~~lg~----v~l~~aL~~~--~~~~~D~~v~-~-~GH~~y~~~ 88 (629)
T 2o1x_A 23 KRLSREQLPALTEEL---RGE---IVRVCSRGGLHLASSLGA----VDIITALHYV--LDSPRDRILF-D-VGHQAYAHK 88 (629)
T ss_dssp TTSCGGGHHHHHHHH---HHH---HHHHHTTSSSCHHHHHHT----HHHHHHHHHH--SCTTTSEEEE-S-SSTTCHHHH
T ss_pred hhCCHHHHHHHHHHH---HHH---HHHHHHhcCCcCCCchhH----HHHHHHHHhh--cCCCCCeEEe-c-CchHHHHHH
Confidence 357888999999888 332 333332 1111123565 3333444221 12 3788873 4 9985 33
Q ss_pred HHHhcCC-CHHHHHHHhcCCCCCCCCCCcccCCCCccccccccCCCCCCCCcceeeeeccccCCcccccceeehhhhhhh
Q 002419 303 LGNVVRK-PLRQIFSEFSGGTRPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTRAKQ 381 (925)
Q Consensus 303 La~vlg~-p~~~ifaEf~G~~~~~~~G~g~ggsgDvkyHlg~s~~~~~~~g~~i~l~l~~npShlg~~~PvA~G~A~A~q 381 (925)
+.. |. +.-..|+++.|. +|.+++ .+| .|. ....+|+|.++|.|+|+|+|.+
T Consensus 89 ~l~--G~~~~~~~~r~~~g~-~G~p~~---~~s----~~~------------------~~~~G~~G~gl~~AvG~AlA~k 140 (629)
T 2o1x_A 89 ILT--GRRDQMADIKKEGGI-SGFTKV---SES----EHD------------------AITVGHASTSLTNALGMALARD 140 (629)
T ss_dssp HTT--TTGGGGGGTTSTTSC-CSSCCG---GGC----TTC------------------CSCCSSSSCHHHHHHHHHHHHH
T ss_pred HHh--CcHhHHhCcccCCCC-CCCCCC---CCC----CCC------------------CcCCCcccccHhHHHHHHHHHH
Confidence 322 43 333345566553 233221 111 221 2234789999999999999999
Q ss_pred hhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccccCCCCCcC------------
Q 002419 382 YYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFTTDPMSGRS------------ 446 (925)
Q Consensus 382 ~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~tT~~~~~rs------------ 446 (925)
+++.+ ..+||++|||+++ +|.++|+||.| ++| +|+||+||+|+++++......
T Consensus 141 ~~~~~-----~~Vv~v~GDG~~~-~G~~~EaL~~A~~~~~p------li~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~ 208 (629)
T 2o1x_A 141 AQGKD-----FHVAAVIGDGSLT-GGMALAALNTIGDMGRK------MLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQ 208 (629)
T ss_dssp HHTCC-----CCEEEEEETTGGG-SHHHHHHHHHHHHHCCS------EEEEEEECSBSSSBCCSSHHHHC----------
T ss_pred HhCCC-----CeEEEEEchhhhh-ccHHHHHHHHHHhhCCC------EEEEEECCCCCCCCChhHHHHHHHHHhhchhHH
Confidence 87665 7899999999998 99999999999 999 999999999999886642100
Q ss_pred --------------c----------ccH------H--HHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEE
Q 002419 447 --------------S----------QYC------T--DVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVD 493 (925)
Q Consensus 447 --------------s----------~~~------~--d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe 493 (925)
. .++ . .++++||++++ +|||+|++++..|.+.|. +.++|+||+
T Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~----~~~~P~lI~ 284 (629)
T 2o1x_A 209 EGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV----DLDGPTILH 284 (629)
T ss_dssp -----------------------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT----TSSSEEEEE
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH----hcCCCEEEE
Confidence 0 112 3 78999999999 999999999999877764 458999999
Q ss_pred EEEeecCCCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchh
Q 002419 494 LVCYRRFGHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWL 573 (925)
Q Consensus 494 ~~tYR~~GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~ 573 (925)
+.|++.+||... + +. |
T Consensus 285 v~t~kg~G~~~~---------e------------------------------------------------~~-~------ 300 (629)
T 2o1x_A 285 IVTTKGKGLSYA---------E------------------------------------------------AD-P------ 300 (629)
T ss_dssp EECCTTTTCHHH---------H------------------------------------------------HC-T------
T ss_pred EEEecCCCCChh---------H------------------------------------------------cC-C------
Confidence 999999998410 0 00 0
Q ss_pred hhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC
Q 002419 574 SAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEG 653 (925)
Q Consensus 574 ~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~ 653 (925)
..|.+.. |- ..++++. |. .. ...|..+...++.++++++
T Consensus 301 -~~~H~~~-~f----~~~~~~~--------------~~--------------------~~-~~~~~~~~~~~l~~~~~~d 339 (629)
T 2o1x_A 301 -IYWHGPA-KF----DPATGEY--------------VP--------------------SS-AYSWSAAFGEAVTEWAKTD 339 (629)
T ss_dssp -TGGGSCC-SB----CTTTCCB--------------CC--------------------CC-CCBHHHHHHHHHHHHHHHC
T ss_pred -cccccCc-cC----CcCcCcc--------------cc--------------------cc-hHHHHHHHHHHHHHHhhhC
Confidence 0111100 00 0011110 00 01 3567888888889999999
Q ss_pred CcEEEecccCCCcccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhh
Q 002419 654 NHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQF 733 (925)
Q Consensus 654 ~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqF 733 (925)
++|.+.++|+..|+ +. .++. ++| +.|++|++|+|.+++|++.|+|+.|.+|++ ++ |
T Consensus 340 ~~v~~i~~d~~~~~-~~-----------------~~f~--~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~--~~-~ 395 (629)
T 2o1x_A 340 PRTFVVTPAMREGS-GL-----------------VEFS--RVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVV--AI-Y 395 (629)
T ss_dssp TTEEEEESSCTTTT-TC-----------------HHHH--HHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEE--EE-E
T ss_pred cCEEEEeccccCCc-Ch-----------------HHHH--Hhc-CcceEeccccHHHHHHHHHHHHHcCCEEEE--Ee-c
Confidence 99999999997652 22 4677 678 889999999999999999999999999988 88 9
Q ss_pred hhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCe
Q 002419 734 GDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNW 811 (925)
Q Consensus 734 gDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl 811 (925)
.+|+..|.+||-+.++ ....|+|++.+||. .| -||.||+. .+ ..++.++|| |
T Consensus 396 ~~F~~~a~dqi~~~~a------~~~~pvv~~~~~~g~~g~dG~tH~~~-~d---------~a~~r~iP~----------l 449 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVA------IEHLNVTFCIDRAGIVGADGATHNGV-FD---------LSFLRSIPG----------V 449 (629)
T ss_dssp HHHHGGGHHHHHHTTT------TTTCCCEEEEESBBCCCTTCTTTCBC-SH---------HHHTTTSTT----------C
T ss_pred HHHHHHHHHHHHHHHh------hcCCCEEEEEECCccCCCCCcccCcc-HH---------HHHHHccCC----------c
Confidence 9999888854433222 14689999999955 56 58999997 33 134668887 9
Q ss_pred EEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCC
Q 002419 812 QIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEG 891 (925)
Q Consensus 812 ~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~ 891 (925)
+|+.|++|.+++++|+.+++. ++|++|..|+..+.. .+.++.. ..|-|... ++.+.
T Consensus 450 ~v~~P~d~~e~~~~~~~a~~~--~~Pv~i~~~r~~~~~----~~~~~~~--------~~~~G~~~-~~~~g--------- 505 (629)
T 2o1x_A 450 RIGLPKDAAELRGMLKYAQTH--DGPFAIRYPRGNTAQ----VPAGTWP--------DLKWGEWE-RLKGG--------- 505 (629)
T ss_dssp EEECCSSHHHHHHHHHHHHHS--SSCEEEECCSSBCCC----CCTTCCC--------CCCTTCCE-EEECC---------
T ss_pred EEEecCCHHHHHHHHHHHHhC--CCCEEEEecCCCCCC----Ccccccc--------cccCCceE-EEeeC---------
Confidence 999999999999999999998 899999999876532 1111111 01223333 23221
Q ss_pred ccEEEEecchHHHHHHHHHHHhh
Q 002419 892 IRRLILCSGKVSSAVCVALYFFY 914 (925)
Q Consensus 892 v~rvilcsGkvyydL~~~~~~~~ 914 (925)
-+-+|+++|-.+...+++.+.+.
T Consensus 506 ~dv~iva~G~~v~~a~~Aa~~L~ 528 (629)
T 2o1x_A 506 DDVVILAGGKALDYALKAAEDLP 528 (629)
T ss_dssp SSEEEEECHHHHHHHHHHHTTCT
T ss_pred CCEEEEEecHHHHHHHHHHHHhc
Confidence 23589999999988888877664
No 11
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=1.9e-36 Score=359.59 Aligned_cols=398 Identities=13% Similarity=0.156 Sum_probs=282.3
Q ss_pred ccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCcccc
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQVAFT 438 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~g~t 438 (925)
..+|+|.++|.|+|+|+|.++.+.+ +..++|++|||+++ +|.++|+||+| +||+ +|+|+.||+|+++
T Consensus 119 ~~G~lG~gl~~A~G~AlA~~~~~~~----~~~vv~v~GDG~~~-eG~~~Eal~~A~~~~l~~-----livi~nnN~~~i~ 188 (616)
T 3mos_A 119 ATGSLGQGLGAACGMAYTGKYFDKA----SYRVYCLLGDGELS-EGSVWEAMAFASIYKLDN-----LVAILDINRLGQS 188 (616)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHTSCC----SCCEEEEEETGGGG-SHHHHHHHHHHHHTTCTT-----EEEEEEECSBCSS
T ss_pred cccccCCccHHHHHHHHHHHHhCCC----CCEEEEEECccccc-cCcHHHHHHHHHHcCCCc-----EEEEEECCCCCCc
Confidence 5588999999999999998875432 26799999999999 99999999999 8997 8999999999999
Q ss_pred cCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCcCHHHHHH
Q 002419 439 TDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKI 518 (925)
Q Consensus 439 T~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~ytqp~ey~~ 518 (925)
++........++.+++++||+++++|||+|++++..|++.| .++|+||+++|+|.+||+..+++. .
T Consensus 189 ~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~------~~~P~lI~v~T~kg~G~~~~e~~~--------~ 254 (616)
T 3mos_A 189 DPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA------KHQPTAIIAKTFKGRGITGVEDKE--------S 254 (616)
T ss_dssp SBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC------CSSCEEEEEECCTTTTSTTTTTCS--------S
T ss_pred CCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc------CCCCEEEEEEEecccccccccCch--------h
Confidence 98777666678899999999999999999999999987432 579999999999999998766553 1
Q ss_pred HHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC--ccchhhhhccCCCCcccccccCCCCCCh
Q 002419 519 IRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPN--RRDWLSAYWSGFKSPEQLSRIRNTGVKP 596 (925)
Q Consensus 519 i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~--~~~~~~~~w~~~~~~~~~~~~~~t~v~~ 596 (925)
| |..| +++++++++.+++++.+++ .+...|. +.......| . ..
T Consensus 255 ~--Hg~~-------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~-~~-- 299 (616)
T 3mos_A 255 W--HGKP-------------LPKNMAEQIIQEIYSQIQS----KKKILATPPQEDAPSVDI-------------A-NI-- 299 (616)
T ss_dssp C--TTCC-------------CCHHHHHHHHHHHHHTCCC----CCCCCCBCCCCCCCCCCC-------------S-CC--
T ss_pred h--cCCC-------------CCHHHHHHHHHHHHHHHHh----hhhhCcCccchhhhhhhh-------------h-cc--
Confidence 2 2222 4555655555444322211 0000010 000000000 0 00
Q ss_pred HHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEecccCCCcccccccceee
Q 002419 597 EILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLH 676 (925)
Q Consensus 597 ~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~rGtF~~RHav~~ 676 (925)
.+.. |+.+ ..+.++....|...++.+++.++++|++.|+|+..|+|.
T Consensus 300 --------~~~~-~~~~-----------------~~~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~~~------- 346 (616)
T 3mos_A 300 --------RMPS-LPSY-----------------KVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFS------- 346 (616)
T ss_dssp --------CCSS-CCCC-----------------CTTCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHSH-------
T ss_pred --------ccCC-Cccc-----------------ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCcch-------
Confidence 0000 1222 123446777888999999999999999999999888763
Q ss_pred ecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhC
Q 002419 677 DQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL 756 (925)
Q Consensus 677 dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~ 756 (925)
..+. ++| +.|++|++|+|.+++|+++|+|+.|.++ +|++||++|+.-|++|| .... .
T Consensus 347 -----------~~~~--~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~--~~~~~f~~Fl~~a~dqi---~~~a--~-- 403 (616)
T 3mos_A 347 -----------EIFK--KEH-PDRFIECYIAEQNMVSIAVGCATRNRTV--PFCSTFAAFFTRAFDQI---RMAA--I-- 403 (616)
T ss_dssp -----------HHHH--HHC-GGGEEECCSCHHHHHHHHHHHHGGGCCE--EEEEEEGGGGGGGHHHH---HHHH--H--
T ss_pred -----------hhHH--HhC-CCCeEEcCccHHHHHHHHHHHHHcCCCC--EEEEehHHHHHHHHHHH---HHHH--H--
Confidence 3566 566 6799999999999999999999999755 45999999999888555 3322 2
Q ss_pred CcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhcc
Q 002419 757 RQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHRE 833 (925)
Q Consensus 757 ~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~ 833 (925)
...|+++.+.| |. .| .||.|.+---++ +|.++|| |+|+.|++|.+++++|+.++..
T Consensus 404 ~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a----------~l~~iP~----------l~V~~P~d~~e~~~~l~~a~~~- 462 (616)
T 3mos_A 404 SESNINLCGSHCGVSIGEDGPSQMALEDLA----------MFRSVPT----------STVFYPSDGVATEKAVELAANT- 462 (616)
T ss_dssp TTCCEEEEEESBSGGGCTTCGGGCBSSHHH----------HHHTSTT----------EEEECCCSHHHHHHHHHHHHTC-
T ss_pred hCCCeEEEEECCCccccCCCCcccCHHHHH----------HhcCCCC----------CEEEecCCHHHHHHHHHHHHhc-
Confidence 23577877776 44 34 588874321334 4668897 9999999999999999999876
Q ss_pred CCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHh
Q 002419 834 FRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFF 913 (925)
Q Consensus 834 ~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~ 913 (925)
+.|+++..++.-. |....+.++|. -|... |+.+. ++.+.+|+|+|..++..+++.+.+
T Consensus 463 -~gp~~ir~~r~~~--p~~~~~~~~~~-----------~Gka~-vl~eg-------~d~dv~iva~G~~v~~al~Aa~~L 520 (616)
T 3mos_A 463 -KGICFIRTSRPEN--AIIYNNNEDFQ-----------VGQAK-VVLKS-------KDDQVTVIGAGVTLHEALAAAELL 520 (616)
T ss_dssp -CSEEEEECCSSCC--BCCSCTTCCCC-----------TTCCE-EEECC-------SSEEEEEECCTHHHHHHHHHHHHH
T ss_pred -CCCEEEEEeCCCC--CccCCCccccc-----------CCeEE-EEEeC-------CCCCEEEEEeCHHHHHHHHHHHHH
Confidence 7998886664311 11111112222 14443 44332 234579999999999999988887
Q ss_pred hhcc
Q 002419 914 YNFG 917 (925)
Q Consensus 914 ~~~~ 917 (925)
..=|
T Consensus 521 ~~~G 524 (616)
T 3mos_A 521 KKEK 524 (616)
T ss_dssp HTTT
T ss_pred HhcC
Confidence 5433
No 12
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=5.6e-35 Score=350.50 Aligned_cols=436 Identities=14% Similarity=0.135 Sum_probs=290.8
Q ss_pred ccccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEE
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~ 431 (925)
....+++|.++|.|+|+|+|.++.+. +....+..++|++|||+++ +|.++|+||+| +||+ +|+||.
T Consensus 112 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~-eG~~~Eal~~A~~~~L~~-----li~i~~ 185 (680)
T 1gpu_A 112 EVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQ-EGISSEASSLAGHLKLGN-----LIAIYD 185 (680)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEE
T ss_pred eeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccc-hhhHHHHHHHHHHhCCCc-----EEEEEE
Confidence 44558899999999999999987641 0011247899999999999 99999999999 9998 999999
Q ss_pred eCCcccccCCCCCcCcccHHHHHhhcCccEE-EEeCC-CHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-
Q 002419 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGD-DMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP- 508 (925)
Q Consensus 432 NNq~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG~-D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp- 508 (925)
||+|+++++...+. +.++.+++++||++++ .|||+ |++++++|++.|.+ ..++|+||++.|+|.+||++.|.+
T Consensus 186 nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~ 261 (680)
T 1gpu_A 186 DNKITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHS 261 (680)
T ss_dssp ECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGG
T ss_pred CCCceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCc
Confidence 99999998766543 5789999999999999 99999 99999999988875 367899999999999999988763
Q ss_pred ---CCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH-----------HHHHHHHHHHHHHHHHhhhcCCCccchhh
Q 002419 509 ---SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDIN-----------KIQEKVNRILSEEFVASKDYVPNRRDWLS 574 (925)
Q Consensus 509 ---~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~-----------~i~~e~~~~l~~a~~~A~~~~p~~~~~~~ 574 (925)
.|+.++++++|++. .+...+.... +.++..+ ..+.++.+.+.+ ..+..|.....++
T Consensus 262 ~H~~~~~~ee~~~~~~~-~~~~~~~~f~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~p~~a~~~~ 331 (680)
T 1gpu_A 262 VHGAPLKADDVKQLKSK-FGFNPDKSFV-----VPQEVYDHYQKTILKPGVEANNKWNKLFSE----YQKKFPELGAELA 331 (680)
T ss_dssp GSSSCCCHHHHHHHHHH-TTCCTTCCSC-----CCHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HHHHCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH-cCCCcCCCcc-----CCHHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHhhChHHHHHHH
Confidence 58889999888642 2221110000 1111111 111122222211 1100011000011
Q ss_pred hhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCC
Q 002419 575 AYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGN 654 (925)
Q Consensus 575 ~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~ 654 (925)
....+. .|. ... ..+| .|. ..++.+....|...++..++.+++
T Consensus 332 ~~~~~~-~p~--------~~~-----------~~~~-~~~----------------~~~~~~a~r~a~~~~L~~~~~~~p 374 (680)
T 1gpu_A 332 RRLSGQ-LPA--------NWE-----------SKLP-TYT----------------AKDSAVATRKLSETVLEDVYNQLP 374 (680)
T ss_dssp HHHTTC-CCT--------TGG-----------GGSC-CCC----------------TTSCCBCHHHHHHHHHHHHTTTCT
T ss_pred HHhccc-CCc--------hhh-----------hhch-hhc----------------cCCcchHHHHHHHHHHHHHHhhCC
Confidence 111100 000 000 0111 110 123346667788889999999999
Q ss_pred cEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCCC-CC-cceeec
Q 002419 655 HVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMEN-PN-SLVMWE 730 (925)
Q Consensus 655 ~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g-~~-~lviwE 730 (925)
+|++.|+|+.. ++|..- + ..|..-.++. .+| +.|++|++|+|.+++|++.|+|+.| .+ |++ .
T Consensus 375 ~v~~~~aDl~~s~~~~~~g--------~-~~f~~~~~~~--~~~-p~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~--~ 440 (680)
T 1gpu_A 375 ELIGGSADLTPSNLTRWKE--------A-LDFQPPSSGS--GNY-SGRYIRYGIREHAMGAIMNGISAFGANYKPYG--G 440 (680)
T ss_dssp TEEEEESSCHHHHTCSCTT--------C-CEECCTTTSS--EET-TCCEEECCSCHHHHHHHHHHHHHHCTTCEEEE--E
T ss_pred CEEEEeccccccccccccc--------c-cccccccccc--cCC-CCceecCCccHHHHHHHHHHHHhcCCCceEEE--e
Confidence 99999999975 444100 0 0010001223 367 7899999999999999999999998 89 987 4
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhcccc
Q 002419 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQ 807 (925)
Q Consensus 731 aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~ 807 (925)
+|.+|+.-++.+|-. . + ....|+|++++| |. .| -||.| |+ +|- ..++.++||
T Consensus 441 -~f~~F~~~~~~air~-~--a----~~~lpvv~v~t~~g~g~G~dG~tH-q~-~ed--------la~lr~iP~------- 495 (680)
T 1gpu_A 441 -TFLNFVSYAAGAVRL-S--A----LSGHPVIWVATHDSIGVGEDGPTH-QP-IET--------LAHFRSLPN------- 495 (680)
T ss_dssp -EEHHHHGGGHHHHHH-H--H----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSH--------HHHHHTSSS-------
T ss_pred -ehHHHHHHHHHHHHH-H--H----hcCCCEEEEEeCCccccCCCCCcc-CC-HHH--------HHHhcCCCC-------
Confidence 677777667766522 1 1 125799999976 43 24 68999 77 772 134668897
Q ss_pred ccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCC
Q 002419 808 ECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSD 887 (925)
Q Consensus 808 ~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~ 887 (925)
|+|+.|++|.+++++|+.+++. .++|++|..||.-+.. .+.+++.. .+-|. .|+.+.+
T Consensus 496 ---l~V~~Pad~~e~~~~l~~A~~~-~~~Pv~i~~~r~~~~~----~~~~~~~~--------~~~G~--~vl~~g~---- 553 (680)
T 1gpu_A 496 ---IQVWRPADGNEVSAAYKNSLES-KHTPSIIALSRQNLPQ----LEGSSIES--------ASKGG--YVLQDVA---- 553 (680)
T ss_dssp ---CEEECCCSHHHHHHHHHHHHHC-SSCCEEEECCSSCBCC----CTTCCHHH--------HTTSC--EEEECCS----
T ss_pred ---CEEEecCCHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC----CCCcchhh--------ccCCC--EEEecCC----
Confidence 9999999999999999999984 2589999999754321 11122110 11232 3554421
Q ss_pred CCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 888 LEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 888 ~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
+-+-+|+++|......+++.+.+..=
T Consensus 554 ---~~dvtiva~G~~v~~al~Aa~~L~~~ 579 (680)
T 1gpu_A 554 ---NPDIILVATGSEVSLSVEAAKTLAAK 579 (680)
T ss_dssp ---SCSEEEEECTHHHHHHHHHHHHHHTT
T ss_pred ---CCCEEEEEEcHHHHHHHHHHHHHHhc
Confidence 12359999999998888888877543
No 13
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-35 Score=355.02 Aligned_cols=430 Identities=13% Similarity=0.142 Sum_probs=284.2
Q ss_pred cccCCcccccceeehhhhhhhhhc---CCC-----CCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEE
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYS---NDM-----DRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHI 429 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~---~d~-----~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~v 429 (925)
...++||.++|.|+|+|+|.++.. +.+ +..+..++|++|||+++ +|++||+||+| +||+ +|+|
T Consensus 130 ~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~-eG~~~EAl~~A~~~~L~n-----li~i 203 (700)
T 3rim_A 130 ITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIE-EGVTSEASSLAAVQQLGN-----LIVF 203 (700)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHH-SHHHHHHHHHHHHTTCTT-----EEEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccc-cChHHHHHHHHHHcCCCc-----EEEE
Confidence 344789999999999999999752 100 12357899999999999 99999999999 9987 9999
Q ss_pred EEeCCcccccCCCCCcCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC
Q 002419 430 VVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP 508 (925)
Q Consensus 430 V~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp 508 (925)
|.||+|+++++...+. ..++.+++++||+++++| ||+|++++++|++.|.+ ..++|+||+++|+|.+||....+.
T Consensus 204 ~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~ 279 (700)
T 3rim_A 204 YDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMDT 279 (700)
T ss_dssp EEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTS
T ss_pred EECCCcccccchhhcc-chhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCCC
Confidence 9999999999877544 678999999999999999 99999999998888754 468999999999999999854332
Q ss_pred -C----CcCHHHHHHHHhC------------CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccc
Q 002419 509 -S----FTQPKMYKIIRSH------------PSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRD 571 (925)
Q Consensus 509 -~----ytqp~ey~~i~~~------------~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~ 571 (925)
. --.+++++..++. .+++..|++. .++|...++++++..+++++. .|....
T Consensus 280 ~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~-~~~g~~~~~~w~~~~~~~~~~-----------~p~~~~ 347 (700)
T 3rim_A 280 GKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGL-VARGKQAHERWQLEFDAWARR-----------EPERKA 347 (700)
T ss_dssp HHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHH-----------CHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHhh-----------ChHHHH
Confidence 1 1234455443221 0223334332 233321122222222211111 111111
Q ss_pred hhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 002419 572 WLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLV 651 (925)
Q Consensus 572 ~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~ 651 (925)
-++..+++- .|..+ .. .+| .+. .+++++.+..|-..++..++.
T Consensus 348 ~~~~~~~~~-~p~~~----~~---------------~~p-~~~----------------~~~~~~atr~a~~~~L~~l~~ 390 (700)
T 3rim_A 348 LLDRLLAQK-LPDGW----DA---------------DLP-HWE----------------PGSKALATRAASGAVLSALGP 390 (700)
T ss_dssp HHHHHHTTC-CCTTT----TS---------------SCC-CCC----------------TTSSCEEHHHHHHHHHHHHTT
T ss_pred HHHHHhccC-CCcch----hh---------------hcc-ccc----------------ccccchHHHHHHHHHHHHHHh
Confidence 111111110 00000 00 011 010 012346677788888999999
Q ss_pred cCCcEEEecccCCC--ccc-ccccceeeecCCCceeccCCCccccCCC-----cc----eEEEcCCcchHHHHHHHhhhc
Q 002419 652 EGNHVRLSGQDVER--GTF-SHRHSVLHDQETGEQYCPLDHVMMNQDA-----EM----FTVSNSSLSEFGVLGFELGYS 719 (925)
Q Consensus 652 ~~~~v~l~GqDv~r--GtF-~~RHav~~dq~t~~~y~pL~~l~~~~~~-----g~----~rV~nspLSE~ailG~~~G~s 719 (925)
++++|++.++|+.. ||| +. + ..+. ++| |+ .|++|++|+|.+++|++.|+|
T Consensus 391 ~~p~vv~~saDl~~s~~t~~~~---------~-------~~f~--~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA 452 (700)
T 3rim_A 391 KLPELWGGSADLAGSNNTTIKG---------A-------DSFG--PPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIV 452 (700)
T ss_dssp TCTTEEEEESSCHHHHTCSCTT---------C-------CEES--CGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHH
T ss_pred hCCCEEEEeCCccCCCCccccc---------c-------hhhc--ccccccccCCcccCCceeecCccHHHHHHHHHHHH
Confidence 99999999999975 554 21 2 4555 455 34 599999999999999999999
Q ss_pred CC-CCCcceeec--hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCC
Q 002419 720 ME-NPNSLVMWE--AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPY 793 (925)
Q Consensus 720 ~~-g~~~lviwE--aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~ 793 (925)
+. |.+|++ + ++|.||...+ |-. + + .+..|++++++| |. .| -||.| |+ +|- ..
T Consensus 453 ~~gG~~Pv~--~tF~~F~d~~~~~---ir~-~--a----l~~lpvv~v~thdg~gvG~dG~TH-q~-ied--------~a 510 (700)
T 3rim_A 453 LHGPTRAYG--GTFLQFSDYMRPA---VRL-A--A----LMDIDTIYVWTHDSIGLGEDGPTH-QP-IEH--------LS 510 (700)
T ss_dssp HHSSCEEEE--EEEGGGGGGGHHH---HHH-H--H----HHTCCCEEEEECCSGGGCTTCTTT-SC-SSH--------HH
T ss_pred HcCCCEEEE--EecHHHHHHHHHH---HHH-h--c----CCCCCEEEEEeCCCcccCCCCCcc-CC-hhH--------HH
Confidence 99 999988 8 6666665543 321 1 1 125899999987 33 34 59999 55 552 23
Q ss_pred cccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCC---cEEEEecccccCCCCCCCCcccccccCCCCCCCC
Q 002419 794 VIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRK---PLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDK 870 (925)
Q Consensus 794 ~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~---Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~ 870 (925)
++.++|| |+|+.|++|.+++++|+.+++. ++ |++|..|+.-+..-. ..+...+..
T Consensus 511 ~lr~iPn----------l~V~~Pad~~e~~~~l~~Ai~~--~~~~~Pv~ir~~r~~~~~~~-~~~~~~~~~--------- 568 (700)
T 3rim_A 511 ALRAIPR----------LSVVRPADANETAYAWRTILAR--RNGSGPVGLILTRQGVPVLD-GTDAEGVAR--------- 568 (700)
T ss_dssp HHHTSTT----------CEEECCSSHHHHHHHHHHHHTT--TTCSSCEEEECCSSEECCCT-TCCHHHHHH---------
T ss_pred HHhcCCC----------CEEEeCCCHHHHHHHHHHHHHc--cCCCCCEEEEeccccCCCcC-cccccccCC---------
Confidence 4678997 9999999999999999999997 54 999998876542110 000111221
Q ss_pred CCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 871 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 871 ~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
|. .|+.+.+.. ....+-+-+|+++|...+..+++.+.+..-
T Consensus 569 --G~--~vlr~g~~~-~~~~~~dvtiia~G~~v~~al~Aa~~L~~~ 609 (700)
T 3rim_A 569 --GG--YVLSDAGGL-QPGEEPDVILIATGSEVQLAVAAQTLLADN 609 (700)
T ss_dssp --SC--EEEECCSCC-CTTCCCSEEEEECGGGHHHHHHHHHHHHTT
T ss_pred --Cc--EEEecCCcc-ccCCCCCEEEEEechHHHHHHHHHHHHHhc
Confidence 33 366654200 001122469999999888877777777543
No 14
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=5.3e-34 Score=341.58 Aligned_cols=430 Identities=14% Similarity=0.112 Sum_probs=284.4
Q ss_pred cccCCcccccceeehhhhhhhhhc-----CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEe
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYS-----NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~-----~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~N 432 (925)
...++||.++|.|+|+|+|.++.+ .+....+..++|++|||+++ +|.++|+|++| +||+ +|+||.|
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~-eG~~~Eal~~A~~~~L~~-----li~i~d~ 186 (673)
T 1r9j_A 113 VTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLM-EGVCQEALSLAGHLALEK-----LIVIYDS 186 (673)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHHTCTT-----EEEEEEE
T ss_pred eccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhc-ccHHHHHHHHHHHhCCCc-----EEEEEEC
Confidence 345789999999999999998754 11111247899999999999 99999999999 9998 9999999
Q ss_pred CCcccccCCCCCcCcccHHHHHhhcCccEE-EEeC-CCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCC-
Q 002419 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNG-DDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPS- 509 (925)
Q Consensus 433 Nq~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG-~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~- 509 (925)
|+|+++++..... ..++.+++++||++++ .||| +|+++++.|++.|.+ ..++|+||++.|+|.+||...|...
T Consensus 187 N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~ 262 (673)
T 1r9j_A 187 NYISIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKV 262 (673)
T ss_dssp CSBCSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGG
T ss_pred CCCccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCccc
Confidence 9999999877665 6789999999999999 8999 999999999888764 3689999999999999998655532
Q ss_pred ---CcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHH------HHHHHHHHHHHHhhhcCCCccchhhhhccCC
Q 002419 510 ---FTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQE------KVNRILSEEFVASKDYVPNRRDWLSAYWSGF 580 (925)
Q Consensus 510 ---ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~------e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~ 580 (925)
...+++++++++.-. ...+. .=.+.++..+.++. ..++..++.++..+...|.....++....+
T Consensus 263 H~~~~~~ee~~~~~~~~~-~~~~~-----~f~~p~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~~P~~~~~~~~~~~~- 335 (673)
T 1r9j_A 263 HGAPLGEEDIANIKAKFG-RDPQK-----KYDVDDDVRAVFRMHIDKCSAEQKAWEELLAKYTAAFPAEGAAFVAQMRG- 335 (673)
T ss_dssp TSSCCCHHHHHHHHHHTT-SCSSC-----CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-
T ss_pred ccCCCCHHHHHHHHHhcC-CCCcc-----cccCCHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhChhHHHHHHHHhcC-
Confidence 356677776653210 00000 00012222221111 000111111111111111110001111100
Q ss_pred CCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEec
Q 002419 581 KSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSG 660 (925)
Q Consensus 581 ~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~G 660 (925)
.+|+.|.. .+.. . ++.+....|...++..++.++++|++.|
T Consensus 336 ---------------------------~~p~~~~~--~~p~--------~--~~~~a~r~a~~~~L~~l~~~~p~vv~~~ 376 (673)
T 1r9j_A 336 ---------------------------ELPSGWEA--KLPT--------N--SSAIATRKASENCLAVLFPAIPALMGGS 376 (673)
T ss_dssp ---------------------------CCCTTTGG--GSCC--------C--CSCEEHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred ---------------------------CCCchhhh--hccc--------c--ccchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 11111100 0000 0 2235556678888999999999999999
Q ss_pred ccCCC--cccccccceeeecCCCceeccCCCccccC-CCcceEEEcCCcchHHHHHHHhhhcCC-CCCcceeechhhhhh
Q 002419 661 QDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQ-DAEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVMWEAQFGDF 736 (925)
Q Consensus 661 qDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~-~~g~~rV~nspLSE~ailG~~~G~s~~-g~~~lviwEaqFgDF 736 (925)
+|+.. |++.. ++.| ..+. + +| +.|++|++|+|.+++|++.|+|+. |.+|++ +. |..|
T Consensus 377 aDl~~s~~~~~~------~~~~-------~~f~--~~~~-~~R~id~GIaE~~~~~~a~GlA~~GG~~P~~--~~-~~~F 437 (673)
T 1r9j_A 377 ADLTPSNLTRPA------SANL-------VDFS--SSSK-EGRYIRFGVREHAMCAILNGLDAHDGIIPFG--GT-FLNF 437 (673)
T ss_dssp SSCHHHHTCSCG------GGCC-------CBCB--TTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEE--EE-EGGG
T ss_pred cccccccccccc------Cccc-------cccc--ccCC-CCCeEecCccHHHHHHHHHHHHhcCCCEEEE--Ee-hHHH
Confidence 99975 45421 0112 3466 5 67 789999999999999999999999 599988 76 5555
Q ss_pred HhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC--CCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEE
Q 002419 737 ANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (925)
Q Consensus 737 ~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~--~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~V 813 (925)
+.-++.+|-+ + + ....|+|+++.| |. ..-||+| |+ +|-. .++.++|| |+|
T Consensus 438 ~~~~~~~ir~-~--a----~~~~pvv~~~t~~g~g~G~dG~tH-q~-~edl--------a~lr~iP~----------l~V 490 (673)
T 1r9j_A 438 IGYALGAVRL-A--A----ISHHRVIYVATHDSIGVGEDGPTH-QP-VELV--------AALRAMPN----------LQV 490 (673)
T ss_dssp GGGGHHHHHH-H--H----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSHH--------HHHHHSTT----------CEE
T ss_pred HHHHHHHHHH-H--H----hcCCCEEEEEECCccCcCCCCccc-CC-HHHH--------HHHcCCCC----------CEE
Confidence 5555554433 1 2 125799999866 43 3379999 66 7722 23568887 999
Q ss_pred EEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCcc
Q 002419 814 VNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIR 893 (925)
Q Consensus 814 v~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~ 893 (925)
+.|+++.+++++|+.++++ .+.|++|..|+.-+.. .+.+++.. .+-|. .|+.+.. +-+
T Consensus 491 ~~Pad~~e~~~~l~~a~~~-~~~Pv~i~~~r~~~~~----~~~~~~~~--------~~~Ga--~vl~~g~-------~~d 548 (673)
T 1r9j_A 491 IRPSDQTETSGAWAVALSS-IHTPTVLCLSRQNTEP----QSGSSIEG--------VRHGA--YSVVDVP-------DLQ 548 (673)
T ss_dssp ECCSSHHHHHHHHHHHHHC-TTCCEEEECCSSEECC----CTTCCHHH--------HHTSC--EEEECCT-------TCS
T ss_pred EeCCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCCCC----CCCccccc--------ccCCC--EEEeeCC-------CCC
Confidence 9999999999999999984 2689999999764421 11111100 11132 3555421 124
Q ss_pred EEEEecchHHHHHHHHHHHhh
Q 002419 894 RLILCSGKVSSAVCVALYFFY 914 (925)
Q Consensus 894 rvilcsGkvyydL~~~~~~~~ 914 (925)
-+|+++|-.....+++.+.+.
T Consensus 549 v~lia~G~~v~~al~Aa~~L~ 569 (673)
T 1r9j_A 549 LVIVASGSEVSLAVDAAKALS 569 (673)
T ss_dssp EEEEECGGGHHHHHHHHHHHT
T ss_pred EEEEEechhHHHHHHHHHHHH
Confidence 599999999888888887774
No 15
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-34 Score=345.64 Aligned_cols=423 Identities=14% Similarity=0.149 Sum_probs=288.4
Q ss_pred ccccCCcccccceeehhhhhhhhhc-----CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEE
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYS-----NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~-----~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~ 431 (925)
....+|+|.++|.|+|+|+|.++.+ .+.+..+..++|++|||+++ +|.++|+||+| +||+ +|+||.
T Consensus 114 ~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~-eG~~~Eal~~A~~~~L~~-----li~i~~ 187 (651)
T 2e6k_A 114 EVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLM-EGVSGEAASLAGHWGLSK-----LIVFWD 187 (651)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEE
T ss_pred eeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhc-hhHHHHHHHHHHHcCCCe-----EEEEEE
Confidence 3445889999999999999998754 01111247899999999999 99999999999 9998 999999
Q ss_pred eCCcccccCCCCCcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCC
Q 002419 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSF 510 (925)
Q Consensus 432 NNq~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~y 510 (925)
||+|+++++..... ..++.+++++||++++ .|||+|+++++.|++.|.+ .++|+||++.|+|.+||++.|...|
T Consensus 188 nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~~~~~~~~ 262 (651)
T 2e6k_A 188 DNRISIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSPKQDSAKA 262 (651)
T ss_dssp ECCEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTSTTTTSGGG
T ss_pred CCCccccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEecccccccccccc
Confidence 99999998776554 6789999999999999 9999999999999888865 6789999999999999996555545
Q ss_pred ----cCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHH---------HHHHHHHHHHHHHHHHhhhcCCCccchhhhhc
Q 002419 511 ----TQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDIN---------KIQEKVNRILSEEFVASKDYVPNRRDWLSAYW 577 (925)
Q Consensus 511 ----tqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~---------~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w 577 (925)
..+++++++++ ++|+. +...+ +.++..+ ..+.++.+.+.+.. ...|.....+....
T Consensus 263 H~~~~~~~e~~~~~~-~~~~~-~~~f~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~ 331 (651)
T 2e6k_A 263 HGEPLGPEAVEATRR-NLGWP-YPPFV-----VPEEVYRHMDMREKGRAWQEAWEKALEAYA----RAYPDLHQELMRRL 331 (651)
T ss_dssp TSSCCHHHHHHHHHH-HHTCC-CCTTC-----CCHHHHHHHCCHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHH-HcCCC-ccccc-----CChHHHHHHHHhhhchhhHHHHHHHHHHhh----hhChHHHHHHHHHh
Confidence 35667777753 33332 11111 1112111 11222222222211 10011000011111
Q ss_pred cCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEE
Q 002419 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVR 657 (925)
Q Consensus 578 ~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~ 657 (925)
.. ..|. + .. .+|. + ++.+....|-..++..++.++++|+
T Consensus 332 ~~-~~p~-~----~~---------------~~~~-~-------------------~~~~~~r~a~~~~L~~~~~~~p~~~ 370 (651)
T 2e6k_A 332 RG-ELPP-L----PE---------------EPPS-F-------------------DKPIATRAASGRALNLLAPRLPELL 370 (651)
T ss_dssp TT-CCCC-C----CC---------------SCCC-C-------------------CSCBCHHHHHHHHHHHHGGGCTTEE
T ss_pred cC-cCCc-h----hh---------------hccc-c-------------------CccHHHHHHHHHHHHHHHhhCCCEE
Confidence 00 0000 0 00 0111 1 1234455677778899999999999
Q ss_pred EecccCCC--cccccccceeeecCCCceeccCCCccccC-CCcceEEEcCCcchHHHHHHHhhhcCCC-CCcceeec--h
Q 002419 658 LSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQ-DAEMFTVSNSSLSEFGVLGFELGYSMEN-PNSLVMWE--A 731 (925)
Q Consensus 658 l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~-~~g~~rV~nspLSE~ailG~~~G~s~~g-~~~lviwE--a 731 (925)
+.++|+.. +++.- -+.++. + +| +.|++|++|+|.+++|++.|+|+.| .+|++ + +
T Consensus 371 ~~~aDl~~s~~~~~~---------------~~~~f~--~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~--~t~~ 430 (651)
T 2e6k_A 371 GGSADLTPSNNTKAE---------------GMEDFS--RANP-LGRYLHFGVREHAMGAILNGLNLHGGYRAYG--GTFL 430 (651)
T ss_dssp EEESSCHHHHTCSCT---------------TCCBCB--TTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEE--EEEG
T ss_pred EEeCccccccccccc---------------cccccC--ccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEEEE--EeHH
Confidence 99999974 44321 125676 5 77 8999999999999999999999998 99988 7 9
Q ss_pred hhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEc-CccC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccc
Q 002419 732 QFGDFANGAQVIFDQFVNSGESKWLRQSGLVVML-PHGY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQE 808 (925)
Q Consensus 732 qFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~l-PhG~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~ 808 (925)
||.||...+ | ... + ....|+|+++ +.|. .| -||.| |+ +|-. .++.++||
T Consensus 431 ~F~~~~~~a---i-r~~--a----~~~lpvv~~~t~~g~g~G~dG~tH-q~-~edl--------a~lr~iP~-------- 482 (651)
T 2e6k_A 431 VFSDYMRPA---I-RLA--A----LMGVPTVFVFTHDSIALGEDGPTH-QP-VEHL--------MSLRAMPN-------- 482 (651)
T ss_dssp GGGGGSHHH---H-HHH--H----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSHH--------HHHHTSTT--------
T ss_pred HHHHHHHHH---H-HHH--H----hcCCCEEEEEECCccccCCCcCcc-cc-HHHH--------HHhcCCCC--------
Confidence 999998766 2 111 1 1257999995 5454 34 69999 77 8832 23557887
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCC
Q 002419 809 CNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDL 888 (925)
Q Consensus 809 ~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~ 888 (925)
|+|+.|+++.+++++|+.+++. .+.|++|..||..+.. .+.+++.. .+.|. .|+.+.+
T Consensus 483 --l~V~~Pad~~E~~~~l~~A~~~-~~~Pv~i~~~r~~~~~----~~~~~~~~--------~~~G~--~vl~~g~----- 540 (651)
T 2e6k_A 483 --LFVIRPADAYETFYAWLVALRR-KEGPTALVLTRQAVPL----LSPEKARG--------LLRGG--YVLEDVE----- 540 (651)
T ss_dssp --CEEECCSSHHHHHHHHHHHHHC-CSSCEEEECCSSCBCC----CCHHHHGG--------GGGSS--EEEECCS-----
T ss_pred --cEEEecCCHHHHHHHHHHHHHc-CCCCEEEEEeCCCCCC----CCcchhhh--------hcCCC--EEEeeCC-----
Confidence 9999999999999999999985 2589999999876521 11121111 11132 3554421
Q ss_pred CCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 889 EEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 889 ~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
+-+-+|+++|-.....+++.+.+..-|
T Consensus 541 --~~dv~iva~G~~v~~al~Aa~~L~~~G 567 (651)
T 2e6k_A 541 --EPQGVLVATGSEVHLALRAQALLREKG 567 (651)
T ss_dssp --SCSEEEEECTTHHHHHHHHHHHHHHTT
T ss_pred --CCCEEEEEECHHHHHHHHHHHHHHhcC
Confidence 124599999999998888888776433
No 16
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=1.1e-33 Score=339.02 Aligned_cols=438 Identities=14% Similarity=0.125 Sum_probs=293.6
Q ss_pred ccccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEE
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~ 431 (925)
....+++|.++|.|+|+|+|.++.+. +.+..+..++|++|||+++ +|.++|+||+| +||+ +|+||.
T Consensus 110 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~-eG~~~Eal~~A~~~~L~~-----li~i~~ 183 (669)
T 2r8o_A 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM-EGISHEVCSLAGTLKLGK-----LIAFYD 183 (669)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEE
T ss_pred ccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhc-chHHHHHHHHHHHcCCCc-----EEEEEE
Confidence 34458899999999999999986541 1111236899999999999 99999999999 9998 999999
Q ss_pred eCCcccccCCCCCcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCC-CCCC-
Q 002419 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE-IDEP- 508 (925)
Q Consensus 432 NNq~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne-~Ddp- 508 (925)
||+|+++++...+. ..++.+++++||++++ .|||+|+++++.|++.|.+ ..++|+||++.|+|.+||+. .|++
T Consensus 184 nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~ 259 (669)
T 2r8o_A 184 DNGISIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHD 259 (669)
T ss_dssp ECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGG
T ss_pred CCCcEecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCc
Confidence 99999998766543 5789999999999999 9999999999999988875 35789999999999999983 4443
Q ss_pred ---CCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhhhcCCCccchhhhhccCC
Q 002419 509 ---SFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQE-----KVNRILSEEFVASKDYVPNRRDWLSAYWSGF 580 (925)
Q Consensus 509 ---~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~-----e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~ 580 (925)
.|+.+++++.+++.- ... +... .+.++..+.+++ ......++.+....+..|.....+....
T Consensus 260 ~H~~~~~~ee~~~~~~~~-~~~-~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--- 329 (669)
T 2r8o_A 260 SHGAPLGDAEIALTREQL-GWK-YAPF-----EIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRM--- 329 (669)
T ss_dssp GTSSCCCHHHHHHHHHHH-TCC-CCTT-----CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH---
T ss_pred ccCCCCCHHHHHHHHHHc-CCC-cccc-----cCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhChHHHHHHHHHh---
Confidence 578888888875321 000 0000 111111111110 0001111111110000011000000000
Q ss_pred CCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEec
Q 002419 581 KSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSG 660 (925)
Q Consensus 581 ~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~G 660 (925)
+ ..+|+.+. ..+.+ +.. ...+.++.+....|-..++..++..+++|++.+
T Consensus 330 ----------------------~---~~lp~~~~--~~~~~-~~~--~~~~~~~~~~~r~a~~~~L~~l~~~~p~v~~~~ 379 (669)
T 2r8o_A 330 ----------------------K---GEMPSDFD--AKAKE-FIA--KLQANPAKIASRKASQNAIEAFGPLLPEFLGGS 379 (669)
T ss_dssp ----------------------H---TCCCTTHH--HHHHH-HHH--HHHHSCCCEEHHHHHHHHHHHHTTTCTTEEEEE
T ss_pred ----------------------c---ccCChhhh--hhhHH-Hhh--hhcCCCccHHHHHHHHHHHHHHHhhCCCeEEec
Confidence 0 02333221 11111 100 001234567788888999999999999999999
Q ss_pred ccCCC--ccc-ccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCC-CCCcceeechhhhhh
Q 002419 661 QDVER--GTF-SHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVMWEAQFGDF 736 (925)
Q Consensus 661 qDv~r--GtF-~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~-g~~~lviwEaqFgDF 736 (925)
+|+.. |+| +. | ..+. ++| +.|++|++|+|.+++|++.|+|+. |.+|++ ++|.+|
T Consensus 380 aDl~~s~~~~~~~---------~-------~~f~--~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~~---~tf~~F 437 (669)
T 2r8o_A 380 ADLAPSNLTLWSG---------S-------KAIN--EDA-AGNYIHYGVREFGMTAIANGISLHGGFLPYT---STFLMF 437 (669)
T ss_dssp SSCHHHHTCCCTT---------C-------CBTT--TCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEEE---EEEGGG
T ss_pred Ccccccccccccc---------c-------cccc--ccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEEE---eehHHH
Confidence 99975 555 22 2 5677 677 889999999999999999999999 899988 467777
Q ss_pred HhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC--CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEE
Q 002419 737 ANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY--DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQI 813 (925)
Q Consensus 737 ~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~--~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~V 813 (925)
+.-++.+|-+ + + ....|+|++++|+. .| -||+| |+ +|-. .++.++|| |+|
T Consensus 438 ~~~~~~~ir~-~--a----~~~lpvv~~~t~~g~~~G~dG~tH-q~-~edl--------a~lr~iP~----------l~V 490 (669)
T 2r8o_A 438 VEYARNAVRM-A--A----LMKQRQVMVYTHDSIGLGEDGPTH-QP-VEQV--------ASLRVTPN----------MST 490 (669)
T ss_dssp GGTTHHHHHH-H--H----HTTCCCEEEEECCSGGGCTTCTTT-CC-SSHH--------HHHHTSTT----------CEE
T ss_pred HHHHHHHHHH-H--H----hcCCCEEEEEeCCCcCcCCCCCcc-CC-HHHH--------HHhcCCCC----------CEE
Confidence 6666655533 2 1 24689999998733 24 68999 66 7732 23567887 999
Q ss_pred EEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCcc
Q 002419 814 VNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIR 893 (925)
Q Consensus 814 v~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~ 893 (925)
+.|+++.+++++|+.+++. .+.|++|..||..+.. .+.++... ...+-|. .|+.+.. . +-+
T Consensus 491 ~~Pad~~E~~~~l~~a~~~-~~~Pv~i~~~r~~~~~----~~~~~~~~------~~~~~G~--~vl~~~~-----g-~~d 551 (669)
T 2r8o_A 491 WRPCDQVESAVAWKYGVER-QDGPTALILSRQNLAQ----QERTEEQL------ANIARGG--YVLKDCA-----G-QPE 551 (669)
T ss_dssp ECCSSHHHHHHHHHHHHHC-SSSCEEEECCSSEECC----CCCCHHHH------HHGGGSC--EEEECCS-----S-SCS
T ss_pred EecCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCC----CCCccchh------hhccCCC--EEEeccC-----C-CCC
Confidence 9999999999999999984 2589999999877632 11111100 0001132 3454421 1 123
Q ss_pred EEEEecchHHHHHHHHHHHhhh
Q 002419 894 RLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 894 rvilcsGkvyydL~~~~~~~~~ 915 (925)
-+|+++|-.....+++.+.+..
T Consensus 552 v~iva~G~~v~~al~Aa~~L~~ 573 (669)
T 2r8o_A 552 LIFIATGSEVELAVAAYEKLTA 573 (669)
T ss_dssp EEEEECGGGHHHHHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHh
Confidence 5999999999988888887754
No 17
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=9.5e-34 Score=338.32 Aligned_cols=428 Identities=15% Similarity=0.169 Sum_probs=279.7
Q ss_pred cccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEe
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~N 432 (925)
...++||.++|.|+|+|+|.++.+. +.+..+..++|++|||+++ +|.++|+||+| +||+ +|+||.|
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~-eG~~~Eal~~A~~~~L~~-----livi~dn 186 (663)
T 3kom_A 113 TTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM-EGVSHEACSLAGTLGLNK-----LVAFWDD 186 (663)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH-SHHHHHHHHHHHHHTCTT-----EEEEEEE
T ss_pred cCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh-hchHHHHHHHHHHhCCCe-----EEEEEEC
Confidence 3457899999999999999987653 0011137899999999999 99999999999 9998 9999999
Q ss_pred CCcccccCCCCCcCcccHHHHHhhcCccEE-EEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCC-CCC
Q 002419 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDE-PSF 510 (925)
Q Consensus 433 Nq~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Dd-p~y 510 (925)
|+|+++++..... ..++.+++++||++++ .|||+|++++..|.+.|.+ ..++|+||+++|+|.+||+...+ +.+
T Consensus 187 N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~e~~~~~ 262 (663)
T 3kom_A 187 NNISIDGDTKGWF-SDNTPERFRAYGWHVIENVDGHDFVAIEKAINEAHS---QQQKPTLICCKTVIGFGSPEKAGTASV 262 (663)
T ss_dssp CC-----CGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CSSSCEEEEEECCTTTTCTTTTTCSST
T ss_pred CCcccccchhhhc-chhHHHHHHHCCCeEEEEEcCCCHHHHHHHHHHHHh---cCCCCEEEEEecccccccCCCCCCccc
Confidence 9999998876543 5789999999999999 9999999999987766542 15899999999999999985433 222
Q ss_pred ----cCHHHHHHHHh----CCCHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHHHHHHHHHhhhcCCCccchhhhhc
Q 002419 511 ----TQPKMYKIIRS----HPSSLEIYQNKLLECQHVTQEDINKIQE-----KVNRILSEEFVASKDYVPNRRDWLSAYW 577 (925)
Q Consensus 511 ----tqp~ey~~i~~----~~dpi~~y~~~Li~~Gi~t~ee~~~i~~-----e~~~~l~~a~~~A~~~~p~~~~~~~~~w 577 (925)
-.+++++..++ +.+|.. +.++..+.+++ ...+..++.+...++. | ...-++..+
T Consensus 263 Hg~~l~~e~~~~~~~~l~~~~~pf~-----------~~~~~~~~~~~~~~g~~~~~~w~~~~~~~~~~-p-~~~~~~~~~ 329 (663)
T 3kom_A 263 HGSPLSDQERASAAKELNWDYQAFE-----------IPQDVYKYWDAREKGQALEANWQGQRNLFKDS-P-KFDEFERVL 329 (663)
T ss_dssp TSSCCCHHHHHHHHHHTTCCCCTTC-----------CCHHHHHHHCCHHHHHHHHHHHHHHHHHHTTS-T-THHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCCCCcc-----------CChhHHHHHHHHhhcchhhHHHHHHHHHhhcc-h-HHHHHHHHh
Confidence 23455554322 122211 11111111110 0111112222211111 2 111111111
Q ss_pred cCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEE
Q 002419 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVR 657 (925)
Q Consensus 578 ~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~ 657 (925)
+ ..+|+++. ..+.+.+ .++.+.++++.-..|-..|+..++..+++|+
T Consensus 330 ~----------------------------~~~p~~~~--~~~~~~~---~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv 376 (663)
T 3kom_A 330 S----------------------------KELPVGLE--SAINDYI---ASQLSNPVKVATRKASQMVLEVLCKNMPEMF 376 (663)
T ss_dssp H----------------------------TCCCTTHH--HHHHHHH---HHHHHSCCCEEHHHHHHHHHHHHHHHCTTEE
T ss_pred c----------------------------cCCCcchh--hhhhhhh---hhhhccCcchhHHHHHHHHHHHHHhhCCCEE
Confidence 1 11222210 0011111 1222345667788889999999999999999
Q ss_pred EecccCCC--cc-cccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCC-CCCcceeechhh
Q 002419 658 LSGQDVER--GT-FSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVMWEAQF 733 (925)
Q Consensus 658 l~GqDv~r--Gt-F~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~-g~~~lviwEaqF 733 (925)
+.|+|+.. ++ |+. | .++.. ++| +.|++|++|+|.+++|++.|+|+. |.+|++ +. |
T Consensus 377 ~~~aDl~~s~~~~~~~---------~-------~~f~~-~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~--~t-f 435 (663)
T 3kom_A 377 GGSADLTGSNNTNWSG---------S-------VWLNN-TQE-GANYLSYGVREFGMAAIMNGLSLYGGIKPYG--GT-F 435 (663)
T ss_dssp EEECCC--CCSCCCTT---------C-------CBTTT-CST-TCCEEECCSCHHHHHHHHHHHHHHSSCEEEE--EE-E
T ss_pred EEecccCCCCCccccc---------c-------ccccc-ccC-CCCeEecCccHHHHHHHHHHHHHcCCCEEEE--Ee-h
Confidence 99999974 33 444 3 56621 567 789999999999999999999999 999988 87 9
Q ss_pred hhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccC
Q 002419 734 GDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECN 810 (925)
Q Consensus 734 gDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~N 810 (925)
.+|+.-++.+|-. . + ....|+|+++.| |. .| .||.| |+ +| +..++.++||
T Consensus 436 ~~F~~~~~~~ir~-~--a----~~~lpvv~~~t~~g~g~G~dG~TH-q~-~e--------d~a~lr~iPn---------- 488 (663)
T 3kom_A 436 LVFSDYSRNAIRM-S--A----LMKQPVVHVMSHDSIGLGEDGPTH-QP-IE--------HVPSLRLIPN---------- 488 (663)
T ss_dssp GGGHHHHHHHHHH-H--H----HTTCCCEEEEECCSGGGCTTCTTT-CC-SS--------HHHHHHTSTT----------
T ss_pred HHHHHHHHHHHHH-H--H----hcCCCEEEEEeCCccccCCCCCCc-CC-HH--------HHHHHhcCCC----------
Confidence 9998877766532 1 1 246899999765 43 34 58999 44 44 2234678997
Q ss_pred eEEEEcCChhHHHHHHHHHHh-ccCCCcEEEEecccccCCCCCCCCccc--ccccCCCCCCCCCCCceeEeecCCCCCCC
Q 002419 811 WQIVNVTTPANYFHVLRRQIH-REFRKPLVVMSPKNLLRHKECKSNLSE--FDDVQGHPGFDKQGTRFKRLIKDQNEHSD 887 (925)
Q Consensus 811 l~Vv~pstpa~~~hlLr~q~~-~~~~~Pli~~~pK~Llr~~~~~s~~~~--~~~~~~~~~~~~~~~~F~~vi~d~~~~~~ 887 (925)
|+|+.|++|.+++++|+.+++ . ++|++|..|+.-+ ...+.++ +.. .+.|. .|+.+.+
T Consensus 489 l~V~~Pad~~e~~~~l~~A~~~~--~~Pv~ir~~r~~~----p~~~~~~~~~~~--------~~~G~--~vl~~~~---- 548 (663)
T 3kom_A 489 LSVWRPADTIETMIAWKEAVKSK--DTPSVMVLTRQNL----MPVVQTQHQVAN--------IARGG--YLVKDNP---- 548 (663)
T ss_dssp CEEECCCSHHHHHHHHHHHHHCS--SCCEEEECCSSEE----CCCCCCHHHHHH--------HTTTC--EEEECCT----
T ss_pred cEEEeeCCHHHHHHHHHHHHHhC--CCCEEEEccCccC----CCcCccccchhc--------ccCce--EEEEecC----
Confidence 999999999999999999998 5 8999999875422 1111111 111 11232 4554421
Q ss_pred CCCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 888 LEEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 888 ~~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
.. +-+|+++|......+++.+.+..
T Consensus 549 -g~--dvtiia~G~~v~~al~Aa~~L~~ 573 (663)
T 3kom_A 549 -DA--KLTIVATGSEVELAVKVANEFEK 573 (663)
T ss_dssp -TC--SCEEEECTTHHHHHHHHHHHHHH
T ss_pred -CC--CEEEEEecHHHHHHHHHHHHHHh
Confidence 12 24899999998887787777754
No 18
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=8.1e-33 Score=331.19 Aligned_cols=427 Identities=16% Similarity=0.181 Sum_probs=287.9
Q ss_pred cccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEe
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVN 432 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~N 432 (925)
...+++|.++|.|+|+|+|.++.+. +.+..+..++|++|||+++ +|.++|+|++| +||+ +|+|+.|
T Consensus 137 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~-eG~~~Eal~~A~~~~L~~-----livI~dn 210 (690)
T 3m49_A 137 ATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLM-EGVSAEASSLAAHLQLGR-----LVVLYDS 210 (690)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEEE
T ss_pred cCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhh-hccHHHHHHHHHHhCCCe-----EEEEEEC
Confidence 3457899999999999999987542 0011236799999999999 99999999999 8997 9999999
Q ss_pred CCcccccCCCCCcCcccHHHHHhhcCccEEEE-eCCCHHHHHHHHHHHHHHHHc-cCCcEEEEEEEeecCCCCCCCCC-C
Q 002419 433 NQVAFTTDPMSGRSSQYCTDVAKALDAPIFHV-NGDDMEAVAHVCELAAEWRQT-FHSDVVVDLVCYRRFGHNEIDEP-S 509 (925)
Q Consensus 433 Nq~g~tT~~~~~rss~~~~d~Aka~giP~~~V-dG~D~eAV~~a~~~A~e~rr~-~~~PvlIe~~tYR~~GHne~Ddp-~ 509 (925)
|+|+++++.... ...++.+++++||++++.| ||+|++++..|.+.| ++ .++|+||+++|+|.+||....++ .
T Consensus 211 N~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~Al~~a----~~~~~~P~lI~v~T~kG~G~~~~~~~~~ 285 (690)
T 3m49_A 211 NDISLDGDLNRS-FSESVEDRYKAYGWQVIRVEDGNDIEAIAKAIEEA----KADEKRPTLIEVRTTIGFGSPNKSGKSA 285 (690)
T ss_dssp CSBCSSSBGGGT-CCCCHHHHHHHHTCEEEEESCTTCHHHHHHHHHHH----HHCCSSCEEEEEECCTTTTCTTTTTSGG
T ss_pred CCeecccchhhc-cchhHHHHHHHcCCcEEEEecCCCHHHHHHHHHHH----HhcCCCCEEEEEEeecccccCcccCccc
Confidence 999999877644 3578999999999999999 999999999866554 44 68999999999999999743333 2
Q ss_pred C----cCHHHHHHHHh----CCC--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHHHHHHhhhcCCCcc
Q 002419 510 F----TQPKMYKIIRS----HPS--------SLEIYQNKLLECQHVTQEDINKIQEKVNRI---LSEEFVASKDYVPNRR 570 (925)
Q Consensus 510 y----tqp~ey~~i~~----~~d--------pi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~---l~~a~~~A~~~~p~~~ 570 (925)
+ -.+++++..++ ..+ +.+.|++.+.++|...++++.++-.++... +.+.++.....+ .+.
T Consensus 286 ~Hg~~~~~e~~~~~~~~l~~~~~~~F~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~~~-lp~ 364 (690)
T 3m49_A 286 SHGSPLGVEETKLTKEAYAWTAEQDFHVAEEVYENFRKTVQDVGETAQAEWNTMLGEYAQAYPELANELQAAMNGL-LPE 364 (690)
T ss_dssp GTSSCCCHHHHHHHHHHTTCCCCSTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC-CCT
T ss_pred ccCCCCCHHHHHHHHHHhCCCCCCCCcCChhHHHHHHHHHhhhcchhhHHHHHHHHHHHHhCHHHHHHHHHHhccc-Cch
Confidence 2 13455554432 111 123333323333322233333333333221 222222211111 000
Q ss_pred chhhhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 002419 571 DWLSAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLL 650 (925)
Q Consensus 571 ~~~~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll 650 (925)
. |.. .+|. + ..++++....|...++..++
T Consensus 365 ~-----~~~----------------------------~~~~-~-----------------~~~~~~a~R~a~g~~L~~~~ 393 (690)
T 3m49_A 365 G-----WEQ----------------------------NLPT-Y-----------------ELGSKAATRNSSGAVINAIA 393 (690)
T ss_dssp T-----GGG----------------------------GCCC-C-----------------CTTCEEEHHHHHHHHHHHHH
T ss_pred h-----hhh----------------------------hccc-c-----------------ccccchHHHHHHHHHHHHHH
Confidence 0 100 0110 0 11223445567777889999
Q ss_pred HcCCcEEEecccCCC--ccc-ccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCC-CCCcc
Q 002419 651 VEGNHVRLSGQDVER--GTF-SHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME-NPNSL 726 (925)
Q Consensus 651 ~~~~~v~l~GqDv~r--GtF-~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~-g~~~l 726 (925)
.++++|++.|+|++. ||+ +. | +++. +++++.|++|++|+|.+++|++.|+|+. |.+|+
T Consensus 394 ~~~p~vv~~~aDl~~s~~~~~~~---------~-------~~f~--~~~~~~R~~d~GIaE~~mv~~A~GlA~~gG~~P~ 455 (690)
T 3m49_A 394 ESVPSFFGGSADLAGSNKTYMNN---------E-------KDFT--RDDYSGKNIWYGVREFAMGAAMNGIALHGGLKTY 455 (690)
T ss_dssp HHCTTEEEEESSCHHHHTCCCTT---------S-------CBCB--TTBTTCCEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred hhCCCEEEEeCcccccCCccccc---------c-------ccch--hhcCCCceEEcCchHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999975 554 44 4 6888 7888999999999999999999999999 89998
Q ss_pred eeec--hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC--CC-CCccCCCchhhhhhhccCCCCCcccCCCCc
Q 002419 727 VMWE--AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY--DG-QGPEHSSARLERFLQMSDDNPYVIPEMDST 801 (925)
Q Consensus 727 viwE--aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~--~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~ 801 (925)
+ + ++|.||...|. +.+ +- ...|++++++|+. .| -||.|.+---+. ++.++||
T Consensus 456 ~--~tf~~Fs~f~~~ai----r~~--al----~~lpVv~v~~~~gigvG~dG~THq~ied~a----------~lr~iPn- 512 (690)
T 3m49_A 456 G--GTFFVFSDYLRPAI----RLA--AL----MQLPVTYVFTHDSIAVGEDGPTHEPIEQLA----------ALRAMPN- 512 (690)
T ss_dssp E--EEEGGGGGGGHHHH----HHH--HH----HTCCCEEEEECCSGGGCTTCGGGCCSSHHH----------HHHTSTT-
T ss_pred E--EecHHHHHHHHHHH----HHH--Hh----cCCCcEEEEECCCcCCCCCCCccCCHHHHH----------HHhcCCC-
Confidence 8 8 89999977652 111 11 2589999999843 34 599995431223 4678997
Q ss_pred hhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecC
Q 002419 802 LRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKD 881 (925)
Q Consensus 802 ~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d 881 (925)
|+|+.|++|.+++++|+.+++. .++|++|..|+.-+.. .+.+++.. ....+-|. .|+.+
T Consensus 513 ---------l~V~~Pad~~E~~~~l~~Ai~~-~~~Pv~ir~~R~~~p~----~~~~~~~~-----~~~~~~G~--~vlr~ 571 (690)
T 3m49_A 513 ---------VSVIRPADGNESVAAWRLALES-TNKPTALVLTRQDLPT----LEGAKDDT-----YEKVAKGA--YVVSA 571 (690)
T ss_dssp ---------CEEECCSSHHHHHHHHHHHHHC-SSSCEEEECCSSEEEC----CHHHHTTH-----HHHHHTSC--EEEEC
T ss_pred ---------CEEEeeCCHHHHHHHHHHHHHc-CCCCEEEEeecccCCC----CCcccccc-----ccccCCCe--EEEEe
Confidence 9999999999999999999985 2479999988654321 11111000 00001133 35654
Q ss_pred CCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 882 QNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 882 ~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
.+ ..+-+-+|+++|...+..+++.+.+..=|
T Consensus 572 g~-----~g~~dvtiia~G~~v~~Al~Aa~~L~~~G 602 (690)
T 3m49_A 572 SK-----KETADVILLATGSEVSLAVEAQKALAVDG 602 (690)
T ss_dssp CS-----SSSCSEEEEECTTHHHHHHHHHHHHHHTT
T ss_pred cC-----CCCCCEEEEEechHHHHHHHHHHHHHhcC
Confidence 31 01124599999999888888777775433
No 19
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=4.8e-32 Score=324.91 Aligned_cols=433 Identities=13% Similarity=0.130 Sum_probs=281.1
Q ss_pred ccccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEE
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVV 431 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~ 431 (925)
....+++|.++|.|+|+|+|.++.+. +.+..+..++|++|||+++ +|.++|+||+| +||+ +|+||.
T Consensus 123 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~-eG~~~Eal~~A~~~~L~~-----li~i~~ 196 (675)
T 1itz_A 123 EVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQM-EGIANEACSLAGHWGLGK-----LIAFYD 196 (675)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEE
T ss_pred eECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhc-hhHHHHHHHHHHHhCCCc-----EEEEEE
Confidence 33457899999999999999987641 1011247899999999999 99999999999 8966 999999
Q ss_pred eCCcccccCCCCCcCcccHHHHHhhcCccEE-EEeCC-CHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-
Q 002419 432 NNQVAFTTDPMSGRSSQYCTDVAKALDAPIF-HVNGD-DMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP- 508 (925)
Q Consensus 432 NNq~g~tT~~~~~rss~~~~d~Aka~giP~~-~VdG~-D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp- 508 (925)
||+|+++++..... ..++.+++++||++++ .|||+ |+++++.|.+.|.+ ..++|+||++.|+|.+||+...++
T Consensus 197 nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~ 272 (675)
T 1itz_A 197 DNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSY 272 (675)
T ss_dssp ECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSG
T ss_pred CCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcc
Confidence 99999998776544 6789999999999999 99999 99999998888764 357899999999999999864433
Q ss_pred C----CcCHHHHHHHHhC----CCHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchh
Q 002419 509 S----FTQPKMYKIIRSH----PSSLE-------IYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWL 573 (925)
Q Consensus 509 ~----ytqp~ey~~i~~~----~dpi~-------~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~ 573 (925)
. ...+++++++++. .+|.. .|++. +++| +..+.++.+.+.+.. ...|.....+
T Consensus 273 ~~H~~~~~~e~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~g-------~~~~~~~~~~~~~~~----~~~p~~~~~~ 340 (675)
T 1itz_A 273 SVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWSRH-TPEG-------AALEADWNAKFAEYE----KKYADDAATL 340 (675)
T ss_dssp GGTSSCCCHHHHHHHHHHHTCCCCTTCCCHHHHHHHTTH-HHHH-------HHHHHHHHHHHHHHH----HHSHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHcCCCcccccCChhHHHHHHHH-Hhhh-------hhhHHHHHHHHHHhh----hhChHHHHHH
Confidence 2 2345565555321 01110 01000 0000 011112222221110 0000000001
Q ss_pred hhhccCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC
Q 002419 574 SAYWSGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEG 653 (925)
Q Consensus 574 ~~~w~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~ 653 (925)
+...... .|.. .. ..+|. |. +.++.+....|...++..++.++
T Consensus 341 ~~~~~~~-~p~~--------~~-----------~~~~~-~~----------------~~~~~~a~r~a~~~~L~~i~~~~ 383 (675)
T 1itz_A 341 KSIITGE-LPTG--------WV-----------DALPK-YT----------------PESPGDATRNLSQQCLNALANVV 383 (675)
T ss_dssp HHHHHCC-CCTT--------GG-----------GGSCC-CC----------------TTSCCBCHHHHHHHHHHHHHHHC
T ss_pred HHHhccc-CCch--------hh-----------hhhhh-hc----------------cCCcchHHHHHHHHHHHHHHHhC
Confidence 1101000 0000 00 00111 10 12334556677888899999999
Q ss_pred CcEEEecccCCCcccccccceeeecCCCceeccCCCccccC-CCcceEEEcCCcchHHHHHHHhhhcCCC--CCcceeec
Q 002419 654 NHVRLSGQDVERGTFSHRHSVLHDQETGEQYCPLDHVMMNQ-DAEMFTVSNSSLSEFGVLGFELGYSMEN--PNSLVMWE 730 (925)
Q Consensus 654 ~~v~l~GqDv~rGtF~~RHav~~dq~t~~~y~pL~~l~~~~-~~g~~rV~nspLSE~ailG~~~G~s~~g--~~~lviwE 730 (925)
++|++.++|+...+... + .-+..+. + +| +.|++|++|+|.+++|++.|+|+.| .+|++ +
T Consensus 384 p~v~~~~aDl~~s~~~~---------~----~g~~~f~--~~~~-~~R~id~gIaE~~~v~~a~GlA~~G~~~~P~~--~ 445 (675)
T 1itz_A 384 PGLIGGSADLASSNMTL---------L----KMFGDFQ--KDTA-EERNVRFGVREHGMGAICNGIALHSPGFVPYC--A 445 (675)
T ss_dssp TTEEEEESSCHHHHTCC---------C----TTCCBCC--TTCT-TCCBCCCCSCHHHHHHHHHHHHTTCTTCEEEE--E
T ss_pred CCEEEEecccccccccc---------c----ccccccc--ccCC-CCCeEeecccHHHHHHHHHHHHhcCCCCEEEE--E
Confidence 99999999997522211 1 0113455 5 67 7899999999999999999999999 99988 7
Q ss_pred hhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhcccc
Q 002419 731 AQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQ 807 (925)
Q Consensus 731 aqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~ 807 (925)
. |.+|+.-++.+|-. .+ ....|+|++..| |. .| .||+| |+ +|-. .++.++||
T Consensus 446 t-~~~F~~~~~~~ir~---~a----~~~lpvv~~~t~~g~g~G~dG~tH-q~-~edl--------a~lr~iP~------- 500 (675)
T 1itz_A 446 T-FFVFTDYMRGAMRI---SA----LSEAGVIYVMTHDSIGLGEDGPTH-QP-IEHL--------VSFRAMPN------- 500 (675)
T ss_dssp E-EGGGHHHHHHHHHH---HH----HHTCCCEEEEECCSGGGCTTCTTT-CC-SSHH--------HHHHSSSS-------
T ss_pred E-HHHHHHHHHHHHHH---HH----hcCCCEEEEEECCccccCCCCCCc-Cc-HHHH--------HHhccCCC-------
Confidence 6 66666555655422 11 235799999866 33 24 78999 77 7732 23567897
Q ss_pred ccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCC
Q 002419 808 ECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSD 887 (925)
Q Consensus 808 ~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~ 887 (925)
|+|+.|+++.+++++|+.++++ .++|++|..|+.-+.. .+.+++.. .+-|. .|+.+.+
T Consensus 501 ---l~V~~Pad~~e~~~~l~~a~~~-~~~Pv~i~~~r~~~p~----~~~~~~~~--------~~~Ga--~vl~~~~---- 558 (675)
T 1itz_A 501 ---ILMLRPADGNETAGAYKVAVLN-RKRPSILALSRQKLPH----LPGTSIEG--------VEKGG--YTISDNS---- 558 (675)
T ss_dssp ---CEEECCCSHHHHHHHHHHHHHC-TTSCEEEEECSSCBCC----CTTCCHHH--------HTTSS--EEEEECC----
T ss_pred ---eEEEECCCHHHHHHHHHHHHHh-CCCcEEEEecCCCCCC----CCCccccc--------cccCC--EEEeccc----
Confidence 9999999999999999999984 2689999998753311 11111100 11232 3454421
Q ss_pred CCCCccEEEEecchHHHHHHHHHHHhhhc
Q 002419 888 LEEGIRRLILCSGKVSSAVCVALYFFYNF 916 (925)
Q Consensus 888 ~~~~v~rvilcsGkvyydL~~~~~~~~~~ 916 (925)
..++-+-+|+++|-.....+++.+.+..=
T Consensus 559 ~G~~~dv~iva~G~~v~~al~Aa~~L~~~ 587 (675)
T 1itz_A 559 TGNKPDLIVMGTGSELEIAAKAADELRKE 587 (675)
T ss_dssp STTCCSEEEEECGGGHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHHHHhc
Confidence 01013459999999999888888877543
No 20
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=4.2e-33 Score=330.96 Aligned_cols=415 Identities=13% Similarity=0.100 Sum_probs=272.0
Q ss_pred ccccCCcccccceeehhhhhhhhhcCC--CCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC
Q 002419 360 VANPSHLEAVDPVVIGKTRAKQYYSND--MDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ 434 (925)
Q Consensus 360 ~~npShlg~~~PvA~G~A~A~q~~~~d--~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq 434 (925)
....+|+|.++|.|+|+|+|.++.+.. .+..+..++|++|||+++ +|.++|+||+| +||+ +|+|+.||+
T Consensus 110 ~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~-eG~~~Eal~~A~~~~L~~-----livi~nnN~ 183 (632)
T 3l84_A 110 EIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQ-EGISYEACSLAGLHKLDN-----FILIYDSNN 183 (632)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEEECS
T ss_pred ccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchh-hccHHHHHHHHHHcCCCc-----EEEEEECCC
Confidence 344588999999999999999976430 011136799999999999 99999999999 9997 999999999
Q ss_pred cccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCC-CC---
Q 002419 435 VAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEP-SF--- 510 (925)
Q Consensus 435 ~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp-~y--- 510 (925)
|+++++.... ...++.+++++||++++.|||+|++++..|.+.|. +.++|+||++.|+|-+||....++ .+
T Consensus 184 ~~i~~~~~~~-~~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~ 258 (632)
T 3l84_A 184 ISIEGDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINKALEQAK----KSTKPCLIIAKTTIAKGAGELEGSHKSHGA 258 (632)
T ss_dssp EETTEEGGGT-CCCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHH----TCSSCEEEEEECCTTTTCGGGTTCGGGSSS
T ss_pred cccccchhhh-cChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHH----hCCCCEEEEEeeEeeecCCCCCCcccccCC
Confidence 9999876654 35788999999999999999999999998776654 478999999999999999754332 22
Q ss_pred -cCHHHHHHHHhC--CCHHHHHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHhhhcCCCcc-chhhhhccCC
Q 002419 511 -TQPKMYKIIRSH--PSSLEIYQNKLLECQHVTQEDINKIQ------EKVNRILSEEFVASKDYVPNRR-DWLSAYWSGF 580 (925)
Q Consensus 511 -tqp~ey~~i~~~--~dpi~~y~~~Li~~Gi~t~ee~~~i~------~e~~~~l~~a~~~A~~~~p~~~-~~~~~~w~~~ 580 (925)
-.+++++..++. -||...| .+.++..+.++ +...+..++.+.. +.+ |... .++...|...
T Consensus 259 ~l~~e~~~~~~~~l~~~~~~~f--------~v~~~~~~~~~~~~~~g~~~~~~w~~~~~~-~~~-p~~~~~~~p~~~~~~ 328 (632)
T 3l84_A 259 PLGEEVIKKAKEQAGFDPNISF--------HIPQASKIRFESAVELGDLEEAKWKDKLEK-SAK-KELLERLLNPDFNKI 328 (632)
T ss_dssp CCCHHHHHHHHHHHTCCTTCCS--------CCCHHHHHHHHTHHHHHHHHHHHHHHHHHH-SSC-HHHHHHHHSCCSTTC
T ss_pred CCCHHHHHHHHHHhCCCCCCCc--------cCChHHHHHHHHHHhhcchhHHHHHHHhhc-ccC-chhhhhhCccchhhh
Confidence 134455443210 0110001 01222222211 1111112222222 111 1100 0000111110
Q ss_pred CCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEEEec
Q 002419 581 KSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSG 660 (925)
Q Consensus 581 ~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~l~G 660 (925)
+|+ +. .+..+.-..+...++..+...++++++.+
T Consensus 329 ----------------------------~~~-~~-----------------~~~~~a~r~a~~~~l~~l~~~~p~~v~~~ 362 (632)
T 3l84_A 329 ----------------------------AYP-DF-----------------KGKDLATRDSNGEILNVLAKNLEGFLGGS 362 (632)
T ss_dssp ----------------------------CCC-CC-----------------TTCCBCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred ----------------------------cch-hc-----------------cccchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 000 00 00112222234456777888999999999
Q ss_pred ccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHHHHhhhcCC-CCCcceeechhhhhhH
Q 002419 661 QDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLGFELGYSME-NPNSLVMWEAQFGDFA 737 (925)
Q Consensus 661 qDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~-g~~~lviwEaqFgDF~ 737 (925)
.|+.. +++- ... ++||+.|++|++|+|.+++|++.|+|+. |.+|++ ++ |.+|+
T Consensus 363 aDl~~s~~~~~-------------------~~~--~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~--~~-f~~F~ 418 (632)
T 3l84_A 363 ADLGPSNKTEL-------------------HSM--GDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFS--AT-FFIFS 418 (632)
T ss_dssp SSCHHHHTCCC-------------------TTS--CBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEE--EE-EGGGH
T ss_pred cccCCccCcch-------------------hcc--cccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEE--Ee-cHHHH
Confidence 99853 2210 123 5688899999999999999999999999 899988 87 88888
Q ss_pred hhHHHHHHHHHHhhhhhhCCcCCcEEEcCc-cC-CC-CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEE
Q 002419 738 NGAQVIFDQFVNSGESKWLRQSGLVVMLPH-GY-DG-QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIV 814 (925)
Q Consensus 738 ~~aq~~idq~i~~~~~kw~~~~~lv~~lPh-G~-~G-~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv 814 (925)
.-|+++|-. .+ .+..|+|+++.| |. .| .||.|.+- | +..++.++|| |+|+
T Consensus 419 ~~~~~~ir~---~a----~~~~pv~~~~t~~g~g~G~dG~THq~~--e--------d~a~lr~iP~----------l~V~ 471 (632)
T 3l84_A 419 EYLKPAARI---AA----LMKIKHFFIFTHDSIGVGEDGPTHQPI--E--------QLSTFRAMPN----------FLTF 471 (632)
T ss_dssp HHHHHHHHH---HH----HHTCCCEEEEECCSGGGCTTCGGGSCS--S--------HHHHHHHSSS----------CEEE
T ss_pred HHHHHHHHH---Hh----ccCCCEEEEEECCCcCCCCCCCCCCCH--h--------HHHHHhcCCC----------CEEE
Confidence 877766521 11 135899999865 44 34 68998443 3 1234678997 9999
Q ss_pred EcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCCCCCCCCccE
Q 002419 815 NVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRR 894 (925)
Q Consensus 815 ~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~r 894 (925)
.|++|.+++++|+.+++. ++|++|..|+..+ .+........+.. + ..|+.+.+ .-+-
T Consensus 472 ~P~d~~e~~~~l~~A~~~--~~Pv~ir~~r~~~-~~~~~~~~~~~~~-----------g--~~vl~~~~-------g~dv 528 (632)
T 3l84_A 472 RPADGVENVKAWQIALNA--DIPSAFVLSRQKL-KALNEPVFGDVKN-----------G--AYLLKESK-------EAKF 528 (632)
T ss_dssp CCSSHHHHHHHHHHHHHC--SSCEEEECCSSCB-CCCCCCSBCCGGG-----------S--SEEEECCT-------TCSE
T ss_pred ecCCHHHHHHHHHHHHhC--CCCEEEEEcCCCC-CCCcccccccccc-----------c--cEEEEecC-------CCCE
Confidence 999999999999999996 8999999887544 1111000111211 2 13554421 1235
Q ss_pred EEEecchHHHHHHHHHHHhhh
Q 002419 895 LILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 895 vilcsGkvyydL~~~~~~~~~ 915 (925)
+|+++|......+++.+.+..
T Consensus 529 tiia~G~~v~~al~Aa~~L~~ 549 (632)
T 3l84_A 529 TLLASGSEVWLCLESANELEK 549 (632)
T ss_dssp EEEECGGGHHHHHHHHHHHHH
T ss_pred EEEEechHHHHHHHHHHHHHh
Confidence 899999988888777777654
No 21
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=1e-32 Score=330.94 Aligned_cols=433 Identities=13% Similarity=0.128 Sum_probs=273.3
Q ss_pred ccCCcccccceeehhhhhhhhhcC-----CCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC
Q 002419 362 NPSHLEAVDPVVIGKTRAKQYYSN-----DMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN 433 (925)
Q Consensus 362 npShlg~~~PvA~G~A~A~q~~~~-----d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN 433 (925)
..++||.++|.|+|+|+|.++.+. +.+..+..++|++|||+++ +|.++|+|++| +||+ +|+||.||
T Consensus 153 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~-eG~~~Eal~~A~~~~L~~-----livI~dnN 226 (711)
T 3uk1_A 153 TTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLM-EGISHEACSLAGTLKLNK-----LIALYDDN 226 (711)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH-SHHHHHHHHHHHHTTCTT-----EEEEEEEC
T ss_pred CccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchh-hccHHHHHHHHHHhCCCc-----EEEEEECC
Confidence 457899999999999999987642 1111236899999999999 99999999999 9998 99999999
Q ss_pred CcccccCCCCCcCcccHHHHHhhcCccEEE-EeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCC-CCCCCc
Q 002419 434 QVAFTTDPMSGRSSQYCTDVAKALDAPIFH-VNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEI-DEPSFT 511 (925)
Q Consensus 434 q~g~tT~~~~~rss~~~~d~Aka~giP~~~-VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~-Ddp~yt 511 (925)
+|+++++.... ...++.+++++||+++++ |||+|++++.+|.+.|. +.++|+||++.|+|.+||+.. |...+-
T Consensus 227 ~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~Al~~A~----~~~~P~lI~v~T~kG~G~~~~e~~~~~H 301 (711)
T 3uk1_A 227 GISIDGDVVNW-FHDDTPKRFEAYGWNVIPNVNGHDVDAIDAAIAKAK----RSDKPSLICCKTRIGNGAATKAGGHDVH 301 (711)
T ss_dssp SEETTEEGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHT----TCSSCEEEEEEC----------------
T ss_pred Ccccccchhhh-cCCCHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH----hCCCCEEEEEccccccCCCCCCCccccc
Confidence 99999876655 357899999999999999 89999999999777664 468999999999999999743 333331
Q ss_pred ----CHHHHHHHHh----CCCHH----HHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhc
Q 002419 512 ----QPKMYKIIRS----HPSSL----EIYQNK--LLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRRDWLSAYW 577 (925)
Q Consensus 512 ----qp~ey~~i~~----~~dpi----~~y~~~--Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w 577 (925)
.+++++..++ ..+|. +.|..+ + ++|. ..++++.+.+.+ .++..|....-++...
T Consensus 302 g~~l~~e~~~~~~~~l~~~~~pF~~~~~~~~~~~~~-~~g~-------~~~~~w~~~~~~----~~~~~p~~a~~~~~~~ 369 (711)
T 3uk1_A 302 GAPLGADEIAKTREALGWTWAPFVIPQEVYAAWDAK-EAGK-------RSEDDWNAAFAQ----YRAKYPAEAAEFERRM 369 (711)
T ss_dssp ----CHHHHHHHHHHHTCCCCTTCCCHHHHHHHCCH-HHHH-------HHHHHHHHHHHH----HHHHCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCCccCChHHHHHHHHH-hccc-------hhHHHHHHHHHH----HHhhChhhHHHHHHhh
Confidence 2344443321 11221 111110 1 1121 111122222111 0000010000000000
Q ss_pred cCCCCcccccccCCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcCCcEE
Q 002419 578 SGFKSPEQLSRIRNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEGNHVR 657 (925)
Q Consensus 578 ~~~~~~~~~~~~~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~~~v~ 657 (925)
+ ..+|+++. ..+.+.+. ++.+.++++.-..|-..++..++..+++|+
T Consensus 370 ~----------------------------~~~p~~~~--~~~~~~~~---~~~~~~~~~atR~A~~~~L~~l~~~~p~vv 416 (711)
T 3uk1_A 370 A----------------------------GTLPADWA--AKAAAIVA---GANERGETVATRKASQQTIEGLAAVLPELL 416 (711)
T ss_dssp H----------------------------TCCCTTHH--HHHHHHHH---HHHHHCCCEEHHHHHHHHHHHHHHHCTTEE
T ss_pred c----------------------------cCCCchHH--HHhhHhhh---hhhccccchhHHHHHHHHHHHHHhhCCCEE
Confidence 0 01122110 00011111 112334567777888889999999999999
Q ss_pred EecccCCC--ccc-ccccceeeecCCCceeccCCCccccCC---Cc--ceEEEcCCcchHHHHHHHhhhcC-CCCCccee
Q 002419 658 LSGQDVER--GTF-SHRHSVLHDQETGEQYCPLDHVMMNQD---AE--MFTVSNSSLSEFGVLGFELGYSM-ENPNSLVM 728 (925)
Q Consensus 658 l~GqDv~r--GtF-~~RHav~~dq~t~~~y~pL~~l~~~~~---~g--~~rV~nspLSE~ailG~~~G~s~-~g~~~lvi 728 (925)
+.++|+.. +|+ .. | ..+. ++ |+ ..|++|++|+|.+++|++.|+|+ .|.+|++
T Consensus 417 ~~~aDl~~s~~~~~~~---------~-------~~f~--~~~~~~p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~- 477 (711)
T 3uk1_A 417 GGSADLTGSNLTNWKA---------S-------KAVR--ANADGPGVQWGNHINYGVREFGMSAAINGLVLHGGYKPFG- 477 (711)
T ss_dssp EEESSCHHHHTCCCTT---------C-------CBCE--ECSSSSSEECCSEEECCSCHHHHHHHHHHHHHHSSCEEEE-
T ss_pred EEeccccCcCCccccc---------c-------hhhh--hhhccCCCCCCcEEEeCccHHHHHHHHHHHHHcCCCEEEE-
Confidence 99999974 454 22 2 5666 55 63 28999999999999999999999 5999988
Q ss_pred echhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCcc-C--CCCCccCCCchhhhhhhccCCCCCcccCCCCchhcc
Q 002419 729 WEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHG-Y--DGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQ 805 (925)
Q Consensus 729 wEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG-~--~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~ 805 (925)
++ |.+|+.-+.++|-. .+- .+.|++++..|+ . ...||.| |+ +| +..++.++||
T Consensus 478 -~~-f~~F~~~~~~~ir~---~a~----~~lpv~~v~thdg~gvG~dG~TH-q~-~e--------d~a~lr~iPn----- 533 (711)
T 3uk1_A 478 -GT-FLTFSDYSRNALRV---AAL----MKVPSIFVFTHDSIGLGEDGPTH-QS-VE--------HVASLRLIPN----- 533 (711)
T ss_dssp -EE-EGGGHHHHHHHHHH---HHH----HTCCCEEEEECCSGGGCTTCTTT-CC-SS--------HHHHHHTSTT-----
T ss_pred -EE-hHHHHHHHHHHHHH---hhh----cCCCEEEEEECCCcCcCCCCCcc-CC-hh--------HHHHHhcCCC-----
Confidence 75 99998777766532 121 358999998773 2 3468999 44 44 2234678997
Q ss_pred ccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCCCCCCCCceeEeecCCCCC
Q 002419 806 IQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNEH 885 (925)
Q Consensus 806 ~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~~~~~~~~F~~vi~d~~~~ 885 (925)
|+|+.|++|.+++++|+.+++. ++|++|..|+.-+.. .+.++... +..+-|. .|+.+.+.
T Consensus 534 -----l~V~~Pad~~E~~~~l~~Ai~~--~~Pv~ir~~r~~~p~----~~~~~~~~------~~i~~G~--~vl~~~~G- 593 (711)
T 3uk1_A 534 -----LDVWRPADTVETAVAWTYAVAH--QHPSCLIFSRQNLAF----NARTDAQL------ANVEKGG--YVLRDWDE- 593 (711)
T ss_dssp -----CEEECCSSHHHHHHHHHHHHHS--SSCEEEECCSSEECC----CCCCHHHH------HHGGGSS--EEEECCCS-
T ss_pred -----CEEEecCCHHHHHHHHHHHHhc--CCCEEEEeeCCCCCC----CCCccccc------cccCCCe--EEEEecCC-
Confidence 9999999999999999999996 899999988654321 11111000 0011243 25554210
Q ss_pred CCCCCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 886 SDLEEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 886 ~~~~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
...+-+-+|+++|......+++.+.+..
T Consensus 594 --~~~~~dvtiia~G~~v~~al~Aa~~L~~ 621 (711)
T 3uk1_A 594 --EIVARKIILIATGSEVELAMKAVEPLAQ 621 (711)
T ss_dssp --SCCSEEEEEEECTTHHHHHHHHHHHHHH
T ss_pred --CCCCCCEEEEEecHHHHHHHHHHHHHHH
Confidence 0001245899999988888777777654
No 22
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=99.95 E-value=1.6e-27 Score=264.56 Aligned_cols=217 Identities=16% Similarity=0.184 Sum_probs=171.8
Q ss_pred CccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHH
Q 002419 635 GIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (925)
Q Consensus 635 ~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ail 712 (925)
.+.|..+-..++.+++.++++|++.|+|+++ |+|.. |+++. ++||+.|++|++|||.+++
T Consensus 14 ~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~----------------~~~~~--~~~gp~r~~d~gIaE~~~v 75 (341)
T 2ozl_B 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKV----------------SRGLW--KKYGDKRIIDTPISEMGFA 75 (341)
T ss_dssp EEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTST----------------TTTHH--HHHCTTTEEECCSCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchh----------------HHHHH--HHhCCCcEEECchhHHHHH
Confidence 3555556666678999999999999999986 66654 48888 8899999999999999999
Q ss_pred HHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhC------CcCCcEEEcCccCCC-CCccCCCchhhhhh
Q 002419 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWL------RQSGLVVMLPHGYDG-QGPEHSSARLERFL 785 (925)
Q Consensus 713 G~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~------~~~~lv~~lPhG~~G-~GpeHSs~R~ErfL 785 (925)
|+++|+|+.|.+| +|++||++|+.-|. ||++.+. .||+ .++|+|+++|||+.| .||+||++ +|++|
T Consensus 76 ~~a~G~A~~G~rp--~~~~~f~~F~~~a~---dqi~~~~-a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~-~ea~l 148 (341)
T 2ozl_B 76 GIAVGAAMAGLRP--ICEFMTFNFSMQAI---DQVINSA-AKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQC-FAAWY 148 (341)
T ss_dssp HHHHHHHHTTCEE--EEECSSGGGGGGGH---HHHHTTT-TTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCC-CHHHH
T ss_pred HHHHHHHHCCCEE--EEEeccHHHHHHHH---HHHHHHH-HHHHhhccccCCCCEEEEEcCcCCCCCCcchhhH-HHHHh
Confidence 9999999999988 55999999997666 7766544 4443 578999999999855 79999877 89764
Q ss_pred hccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCC-c--cccccc
Q 002419 786 QMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSN-L--SEFDDV 862 (925)
Q Consensus 786 ql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~-~--~~~~~~ 862 (925)
.++|| |+|++|+||++++++|+++++. ++|++|++||.||+++..+++ + +++.
T Consensus 149 ----------~~iP~----------l~V~~Psd~~e~~~~l~~a~~~--~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~-- 204 (341)
T 2ozl_B 149 ----------GHCPG----------LKVVSPWNSEDAKGLIKSAIRD--NNPVVVLENELMYGVPFEFPPEAQSKDFL-- 204 (341)
T ss_dssp ----------HTSTT----------CEEECCCSHHHHHHHHHHHHHS--SSCEEEEECHHHHTCEEECCHHHHSTTCC--
T ss_pred ----------ccCCC----------CEEEEeCCHHHHHHHHHHHHhc--CCCEEEEEChhhhcCCCCcCCccCCcccc--
Confidence 46775 9999999999999999999987 899999999999987665432 1 1111
Q ss_pred CCCCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 863 QGHPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 863 ~~~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
.+-|.++.+ .+ ..+.+|+|+|..++.++++.+.+..=|
T Consensus 205 -------~~~Gk~~v~-~~---------g~dv~iia~Gs~~~~a~~Aa~~L~~~G 242 (341)
T 2ozl_B 205 -------IPIGKAKIE-RQ---------GTHITVVSHSRPVGHCLEAAAVLSKEG 242 (341)
T ss_dssp -------CCTTCCEEE-EC---------CSSEEEEECSTHHHHHHHHHHHHHTTT
T ss_pred -------ccCCceEEe-cc---------CCCEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 122434332 22 134699999999999999999886433
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.95 E-value=2.6e-25 Score=271.95 Aligned_cols=439 Identities=15% Similarity=0.155 Sum_probs=261.0
Q ss_pred cccCCcccccceeehhhhhhhhhc--CCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCCc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYS--NDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQV 435 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~--~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq~ 435 (925)
...+|+|.+++.|+|+|+|.++.. ...++.+..++|++|||++. +|.++|+||+| +|++ +|+||.||++
T Consensus 189 ~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~-eG~~~EAl~~A~~~~L~n-----li~Vvn~N~~ 262 (886)
T 2qtc_A 189 FPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMD-EPESKGAITIATREKLDN-----LVFVINCNLQ 262 (886)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGG-SHHHHTTHHHHHHTTCTT-----EEEEEEECSB
T ss_pred ccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCcccc-ccchHHHHHHHHHcCCCc-----EEEEEECCCc
Confidence 345789999999999999998721 11122347899999999999 99999999999 8987 9999999999
Q ss_pred ccccCCCCC-cCcccHHHHHhhcCccEEEE--------------------------------------------------
Q 002419 436 AFTTDPMSG-RSSQYCTDVAKALDAPIFHV-------------------------------------------------- 464 (925)
Q Consensus 436 g~tT~~~~~-rss~~~~d~Aka~giP~~~V-------------------------------------------------- 464 (925)
+++++.... ....++..+.+++|+++++|
T Consensus 263 si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~ 342 (886)
T 2qtc_A 263 RLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYP 342 (886)
T ss_dssp CSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSH
T ss_pred ccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhcccch
Confidence 999887653 23567899999999999999
Q ss_pred -------------------eCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCC--CCCCC-----CcCHHHHHH
Q 002419 465 -------------------NGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNE--IDEPS-----FTQPKMYKI 518 (925)
Q Consensus 465 -------------------dG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne--~Ddp~-----ytqp~ey~~ 518 (925)
||+|+++|+.|.+.|.+. .++|++|+++|++.+||.. .+... +..+++++.
T Consensus 343 ~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~ 419 (886)
T 2qtc_A 343 ETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRH 419 (886)
T ss_dssp HHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTCC-------------CHHHHH
T ss_pred HHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHH
Confidence 799999999999988763 3589999999999999973 33222 223333333
Q ss_pred HHhCCCHHHHHHHHHHHcCCC-CHHHHHH--------HHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCccccccc
Q 002419 519 IRSHPSSLEIYQNKLLECQHV-TQEDINK--------IQEKVNRILSEEFVASKDYVPNRRDWLSAYWSGFKSPEQLSRI 589 (925)
Q Consensus 519 i~~~~dpi~~y~~~Li~~Gi~-t~ee~~~--------i~~e~~~~l~~a~~~A~~~~p~~~~~~~~~w~~~~~~~~~~~~ 589 (925)
+++ + .|+- +++++++ ...+++...++ .+......|.. +..+.
T Consensus 420 ~r~----------~---~~~~~~~e~~~~~~f~~~~~~~~~~~~~~~r-~~~l~g~~p~~-------~~~~~-------- 470 (886)
T 2qtc_A 420 IRD----------R---FNVPVSDADIEKLPYITFPEGSEEHTYLHAQ-RQKLHGYLPSR-------QPNFT-------- 470 (886)
T ss_dssp HHH----------H---TTCSCCHHHHTTCCCCCCCTTSHHHHHHHHH-HHHTTSCSSCC-------CCSCC--------
T ss_pred HHH----------H---cCCCCChhhhccccccCCccchHHHHHHHHH-HHHhcccCcch-------hhhhh--------
Confidence 321 1 1221 1111100 00001000000 00000000100 00000
Q ss_pred CCCCCChHHHHHHHhhhhcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHcC---CcEEEecccCCC-
Q 002419 590 RNTGVKPEILKNVGKAITTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAFATLLVEG---NHVRLSGQDVER- 665 (925)
Q Consensus 590 ~~t~v~~~~l~~i~~~~~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~~~ll~~~---~~v~l~GqDv~r- 665 (925)
.. ..+|+ + +. +.... ...+..+.|.++-..++..|+.++ ++|+....|+.+
T Consensus 471 --~~-------------~~~p~-~---~~----~~~~~--~~~~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~ 525 (886)
T 2qtc_A 471 --EK-------------LELPS-L---QD----FGALL--EEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEART 525 (886)
T ss_dssp --SC-------------CCCCC-G---GG----GHHHH--SCCSSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGG
T ss_pred --hc-------------ccCCc-h---hh----hhhhc--cCCCCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccc
Confidence 00 00111 0 00 11000 112355778888888888888887 899988888654
Q ss_pred -cc---cccccceeeecCCCceeccCC--Cc--cccCCCcceEEEcCCcchHH-HH---HHHhhhcCCC--CCcceeech
Q 002419 666 -GT---FSHRHSVLHDQETGEQYCPLD--HV--MMNQDAEMFTVSNSSLSEFG-VL---GFELGYSMEN--PNSLVMWEA 731 (925)
Q Consensus 666 -Gt---F~~RHav~~dq~t~~~y~pL~--~l--~~~~~~g~~rV~nspLSE~a-il---G~~~G~s~~g--~~~lviwEa 731 (925)
|+ |+.. -++. .++..|.|-. .+ . .+..+.|++|++|+|.+ +. |++.|||+.| .+|+++.-.
T Consensus 526 ~G~~dl~~S~--~i~~-~~~~~f~~~d~~~~~~~--~e~~~~R~~d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys 600 (886)
T 2qtc_A 526 FGMEGLFRQI--GIYS-PNGQQYTPQDREQVAYY--KEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYS 600 (886)
T ss_dssp GTCHHHHHHH--CBBC-C-------------------CBTTCCBEECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEG
T ss_pred cCcccccccc--cccc-cCCcccccccchhhhhh--hhcCCCceeeeccCchhhhhHHHHHHHHHHhcCCCceEEEEEeh
Confidence 32 1110 0000 1233444310 00 1 12237899999999999 56 8999999999 799875444
Q ss_pred hhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCc---cCCCCCccCCCchhhhhhhccCCCCCcccCCCCchhccccc
Q 002419 732 QFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPH---GYDGQGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQE 808 (925)
Q Consensus 732 qFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPh---G~~G~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~ 808 (925)
+|+ -|-..||+.....+. ..++.+-.-+ ++.+-||+|++---+. ++.++||
T Consensus 601 ~F~-----~qRa~Dqi~~~~d~~---~~~v~l~~~~~~~~~g~dG~tHq~~~~~a----------~lr~iPn-------- 654 (886)
T 2qtc_A 601 MFG-----FQRIGDLCWAAGDQQ---ARGFLIGGTSGRTTLNGEGLQHEDGHSHI----------QSLTIPN-------- 654 (886)
T ss_dssp GGS-----HHHHHHHHHHHHHTT---CCCEEEEESCSTTTSTTTCTTTCCSCHHH----------HHTTSTT--------
T ss_pred HHH-----HHHHHHHHHHHHHHh---cCCEEEEEecCcccCCCCCCccCCcchHH----------HHhhCCC--------
Confidence 443 244457766554332 1233332211 3356799998631222 3668897
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhccCCCc----EEEEecccc--cCCCCCCCC-c-ccccccCCCCCCCCCCCceeEeec
Q 002419 809 CNWQIVNVTTPANYFHVLRRQIHREFRKP----LVVMSPKNL--LRHKECKSN-L-SEFDDVQGHPGFDKQGTRFKRLIK 880 (925)
Q Consensus 809 ~Nl~Vv~pstpa~~~hlLr~q~~~~~~~P----li~~~pK~L--lr~~~~~s~-~-~~~~~~~~~~~~~~~~~~F~~vi~ 880 (925)
|+|+.|+++.++.++|+.++++. +.| +++..++.. +.++. ... . +.+. |+. .|+.
T Consensus 655 --l~V~~Pada~E~~~~l~~al~~~-~gP~~e~v~i~~~r~~~~~~~p~-~~~~~~~~~~-----------gga--~vlr 717 (886)
T 2qtc_A 655 --CISYDPAYAYEVAVIMHDGLERM-YGEKQENVYYYITTLNENYHMPA-MPEGAEEGIR-----------KGI--YKLE 717 (886)
T ss_dssp --EEEECCSSHHHHHHHHHHHHHHH-HSTTCCCCEEEEECCSCCBCCCC-CCTTCHHHHH-----------HTC--EEEE
T ss_pred --CEEEecCCHHHHHHHHHHHHHhc-CCCCCceEEEEEeCCccccCCCC-CCcchhhhcc-----------Cce--EEEE
Confidence 99999999999999999999861 248 888888654 33221 100 0 0111 121 1232
Q ss_pred CCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 881 DQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 881 d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
+.. .++-+-+|+|+|-+....+++.+.+..
T Consensus 718 ~g~-----~~~~dVtLia~G~~v~~al~AAe~L~~ 747 (886)
T 2qtc_A 718 TIE-----GSKGKVQLLGSGSILRHVREAAEILAK 747 (886)
T ss_dssp EEC-----CSSEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred ecC-----CCCCCEEEEeCcHHHHHHHHHHHHHhh
Confidence 211 011345899999999988888887753
No 24
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=99.95 E-value=2e-27 Score=263.85 Aligned_cols=219 Identities=21% Similarity=0.273 Sum_probs=177.0
Q ss_pred CCCccHHHHHHHHHHHHHHcCCcEEEecccCCC-cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHH
Q 002419 633 GEGIDWALGEALAFATLLVEGNHVRLSGQDVER-GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGV 711 (925)
Q Consensus 633 ~~~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r-GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ai 711 (925)
+..++|..|...|+.+++.++++|++.|+|+++ |||+. + +++. ++||+.|++|++|||.++
T Consensus 18 ~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~---------~-------~~~~--~~~gp~r~~~~gIaE~~~ 79 (342)
T 2bfd_B 18 TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRC---------T-------VGLR--DKYGKDRVFNTPLCEQGI 79 (342)
T ss_dssp EEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTST---------T-------TTHH--HHHCTTTEEECCSCHHHH
T ss_pred cCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccch---------H-------HHHH--HHhCCCeEEEcCcCHHHH
Confidence 345899999999999999999999999999987 78875 4 7888 889999999999999999
Q ss_pred HHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHh-hhhhh--CCc--C-CcEEEcCccCCCCCccCCCchhhhhh
Q 002419 712 LGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS-GESKW--LRQ--S-GLVVMLPHGYDGQGPEHSSARLERFL 785 (925)
Q Consensus 712 lG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~-~~~kw--~~~--~-~lv~~lPhG~~G~GpeHSs~R~ErfL 785 (925)
+|+++|+|+.|.+| +||+||++|+.-|. ||++.. +..+| +.+ + |+|+++|||+.+.||.|++.+.++||
T Consensus 80 v~~a~G~A~~G~rp--~~~~tf~~F~~~a~---dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~~d~~~l 154 (342)
T 2bfd_B 80 VGFGIGIAVTGATA--IAEIQFADYIFPAF---DQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFF 154 (342)
T ss_dssp HHHHHHHHHTTCCE--EEECSSGGGCGGGH---HHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHH
T ss_pred HHHHHHHHHCCCee--EEEecchhHHHHHH---HHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCCcchhhHhHHHHH
Confidence 99999999999998 45999999988777 666532 33344 333 4 99999999887788988888888886
Q ss_pred hccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCC
Q 002419 786 QMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGH 865 (925)
Q Consensus 786 ql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~ 865 (925)
. ++|| |+|+.|+||++++++|+.+++. ++|++|++||.|+|.+....+.+++.
T Consensus 155 ~----------~iP~----------l~V~~Psd~~e~~~~l~~a~~~--~~Pv~i~~p~~l~r~~~~~~~~~~~~----- 207 (342)
T 2bfd_B 155 A----------HCPG----------IKVVIPRSPFQAKGLLLSCIED--KNPCIFFEPKILYRAAAEEVPIEPYN----- 207 (342)
T ss_dssp H----------TSTT----------CEEECCSSHHHHHHHHHHHHHS--SSCEEEEEEGGGTTSCCEEEESSCCC-----
T ss_pred h----------cCCC----------cEEEeeCCHHHHHHHHHHHHhc--CCcEEEEecchhcCCCCCCCCCcccc-----
Confidence 4 6776 9999999999999999999986 89999999999999864433323322
Q ss_pred CCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhh
Q 002419 866 PGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYN 915 (925)
Q Consensus 866 ~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~ 915 (925)
.+-|..+. +.+ .-+.+|+|+|..++..+++.+.+..
T Consensus 208 ----~~~G~~~v-~~~---------g~dv~iia~G~~~~~a~~Aa~~L~~ 243 (342)
T 2bfd_B 208 ----IPLSQAEV-IQE---------GSDVTLVAWGTQVHVIREVASMAKE 243 (342)
T ss_dssp ----CCSSCCEE-EEC---------CSSEEEEECTTHHHHHHHHHHHHHH
T ss_pred ----eeCCceEE-ecc---------CCCEEEEEECHHHHHHHHHHHHHHh
Confidence 11233332 222 2346999999999999999988854
No 25
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=99.94 E-value=1.8e-27 Score=266.90 Aligned_cols=215 Identities=22% Similarity=0.253 Sum_probs=156.2
Q ss_pred CccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHH
Q 002419 635 GIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (925)
Q Consensus 635 ~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ail 712 (925)
.++|..+...|+.+++.++++|++.|+|+++ |+|+. ++++. ++||+.|++|++|||.+++
T Consensus 50 ~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~----------------~~~~~--~~~gp~r~~d~gIaE~~~v 111 (369)
T 1ik6_A 50 MANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLV----------------TEGLY--ERFGPERVIDTPLNEGGIL 111 (369)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEEC---------CT----------------TTTHH--HHHCTTTEEECCSCHHHHH
T ss_pred cccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchh----------------HHHHH--HHhCCCcEEECcccHHHHH
Confidence 3789999999999999999999999999985 66654 47888 8899999999999999999
Q ss_pred HHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHh-hhhhhC--C--cCCcEEEcCccCC-CCCccCCCchhhhhhh
Q 002419 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS-GESKWL--R--QSGLVVMLPHGYD-GQGPEHSSARLERFLQ 786 (925)
Q Consensus 713 G~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~-~~~kw~--~--~~~lv~~lPhG~~-G~GpeHSs~R~ErfLq 786 (925)
|+++|+|+.|.+| +|++||+||+.-|. ||++.. +..||. . ++|+|+++|||+. |.|+.||+. .++||+
T Consensus 112 ~~a~G~A~~G~rp--v~~~tf~~Fl~~a~---Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~-~~a~l~ 185 (369)
T 1ik6_A 112 GFAMGMAMAGLKP--VAEIQFVDFIWLGA---DELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNS-PEAIFV 185 (369)
T ss_dssp HHHHHHHHTTCEE--EEECCCC----CCH---HHHHHHHHHHHC------CCCCEEEEEECC------------HHHHHH
T ss_pred HHHHHHHHCCCee--EEEecchhHHHHHH---HHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccccc-HHHHHc
Confidence 9999999999988 55999999996666 666553 334554 3 7899999999884 544555554 888865
Q ss_pred ccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCC
Q 002419 787 MSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHP 866 (925)
Q Consensus 787 l~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~ 866 (925)
++|| |+|++|+||++++++|+++++ +++|++|++||.|+|.+....+.+++.
T Consensus 186 ----------~iPn----------l~V~~Psd~~e~~~ll~~A~~--~~~Pv~i~~p~~l~r~~~~~v~~~~~~------ 237 (369)
T 1ik6_A 186 ----------HTPG----------LVVVMPSTPYNAKGLLKAAIR--GDDPVVFLEPKILYRAPREEVPEGDYV------ 237 (369)
T ss_dssp ----------TCTT----------CEEECCCSHHHHHHHHHHHHH--SSSCEEEEEEGGGSSCCCEEEECSSCC------
T ss_pred ----------CCCC----------cEEEecCCHHHHHHHHHHHHh--CCCCEEEEEehhhhccCCCCcCCCccc------
Confidence 6775 999999999999999999998 489999999999998743221212221
Q ss_pred CCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhh
Q 002419 867 GFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFY 914 (925)
Q Consensus 867 ~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~ 914 (925)
.+-|.++.+.++ .+.+|+|+|+.++..+++.+.+.
T Consensus 238 ---~~~G~~~v~~~g----------~dv~Iia~G~~v~~a~~Aa~~L~ 272 (369)
T 1ik6_A 238 ---VEIGKARVAREG----------DDVTLVTYGAVVHKALEAAERVK 272 (369)
T ss_dssp ---CCTTCCEEEECC----------SSEEEEECTTHHHHHHHHHHTSS
T ss_pred ---ccCCceEEEEcC----------CCEEEEEeCHHHHHHHHHHHHhC
Confidence 122555444321 34699999999999999998875
No 26
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=99.94 E-value=6.1e-27 Score=259.37 Aligned_cols=227 Identities=19% Similarity=0.234 Sum_probs=176.5
Q ss_pred CccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHH
Q 002419 635 GIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (925)
Q Consensus 635 ~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ail 712 (925)
.++|..+...|+.+++.++++|++.|+|+++ |||+. ++++. ++||+.|++|++|||.+++
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~----------------~~~~~--~~~gp~r~~~~gisE~~~~ 65 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRC----------------TEGLQ--TKYGKSRVFDAPISESGIV 65 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTST----------------TTTHH--HHHCTTTEEECCSCHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchh----------------HHHHH--HHhCCCcEEEccccHHHHH
Confidence 3789999999999999999999999999985 66654 48898 8899999999999999999
Q ss_pred HHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHh-hhhhh--C--CcCCcEEEcCccCCCCCccCCCchhhhhhhc
Q 002419 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS-GESKW--L--RQSGLVVMLPHGYDGQGPEHSSARLERFLQM 787 (925)
Q Consensus 713 G~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~-~~~kw--~--~~~~lv~~lPhG~~G~GpeHSs~R~ErfLql 787 (925)
|+++|+|+.|.+|+ |++||++|++-|. ||++.. +..+| + ..+|+|+++|||+.+.||.|++.+.++||+
T Consensus 66 ~~a~G~A~~G~rp~--~~~t~~~F~~~a~---dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~~~G~th~s~~d~~~l~- 139 (338)
T 1qs0_B 66 GTAVGMGAYGLRPV--VEIQFADYFYPAS---DQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFT- 139 (338)
T ss_dssp HHHHHHHHHTCEEE--EECSCGGGCGGGH---HHHHTTTTTHHHHTTTSSCCCCEEEEEECCSSSCCSSSSCCCHHHHT-
T ss_pred HHHHHHHhCCCEEE--EEeccHhHHHHHH---HHHHHHHHHHhhhcCCCCCCCEEEEEeCCCCCCCcccccccHHHHHh-
Confidence 99999999999885 5999999997666 776643 34444 3 368999999999877888888887888865
Q ss_pred cCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCC---CCCcccccccCC
Q 002419 788 SDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKEC---KSNLSEFDDVQG 864 (925)
Q Consensus 788 ~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~---~s~~~~~~~~~~ 864 (925)
++|| |+|+.|+||.+++++|+.+++. ++|++|++||.|+|.+.. .++.+++..
T Consensus 140 ---------~iP~----------l~V~~Psd~~e~~~~l~~A~~~--~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~--- 195 (338)
T 1qs0_B 140 ---------QVCG----------LRTVMPSNPYDAKGLLIASIEC--DDPVIFLEPKRLYNGPFDGHHDRPVTPWSK--- 195 (338)
T ss_dssp ---------TSTT----------CEEECCCSHHHHHHHHHHHHHS--SSCEEEEEEGGGSSSCCCSCSSSCCCCSTT---
T ss_pred ---------cCCC----------CEEEeeCCHHHHHHHHHHHHhc--CCcEEEEEchHhhcCcccccccCccchhhc---
Confidence 5675 9999999999999999999986 899999999999998654 344443321
Q ss_pred CCCCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHH
Q 002419 865 HPGFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYF 912 (925)
Q Consensus 865 ~~~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~ 912 (925)
++....|.+.|...++.... + .+..+.+|+|+|..++...++.+.
T Consensus 196 ~~~~~~~~~~~~~~~gk~~~-~--~~g~dv~iva~G~~~~~a~~Aa~~ 240 (338)
T 1qs0_B 196 HPHSAVPDGYYTVPLDKAAI-T--RPGNDVSVLTYGTTVYVAQVAAEE 240 (338)
T ss_dssp STTCEEESSCCCCCTTCCCE-E--ECCSSCEEEECTTHHHHHHHHHHH
T ss_pred ccccccCCCCcccccCceeE-e--cCCCCEEEEEeCHHHHHHHHHHHH
Confidence 00001112223322222111 0 123456999999999999988887
No 27
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=99.94 E-value=2.8e-26 Score=252.65 Aligned_cols=218 Identities=24% Similarity=0.302 Sum_probs=172.4
Q ss_pred CccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHH
Q 002419 635 GIDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVL 712 (925)
Q Consensus 635 ~idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ail 712 (925)
.++|.+|...|+.+++.++++|++.|+|+++ |||.. | +++. ++||+.|++|++|||.+++
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~---------~-------~~~~--~~~gp~r~~~~gIaE~~~v 64 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLV---------T-------EGLL--QKYGPDRVMDTPLSEAAIV 64 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTST---------T-------TTHH--HHHCTTTEEECCSCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchh---------h-------HHHH--HHhCCCcEEECchhHHHHH
Confidence 4789999999999999999999999999986 77765 3 7888 8899999999999999999
Q ss_pred HHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhh---hhhhC--CcCCcEEEcCccCCCC-CccCCCchhhhhhh
Q 002419 713 GFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSG---ESKWL--RQSGLVVMLPHGYDGQ-GPEHSSARLERFLQ 786 (925)
Q Consensus 713 G~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~---~~kw~--~~~~lv~~lPhG~~G~-GpeHSs~R~ErfLq 786 (925)
|+++|+|+.|.+|++ ++||++|++-|. ||++... .++++ ...|+|+++|+|+.|. |++||+ ..+++|+
T Consensus 65 ~~a~G~A~~G~~p~~--~~t~~~F~~~a~---dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~-~~~a~~~ 138 (324)
T 1umd_B 65 GAALGMAAHGLRPVA--EIQFADYIFPGF---DQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQ-SPEAHFV 138 (324)
T ss_dssp HHHHHHHHHTCEEEE--ECSSGGGCGGGH---HHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSC-CCHHHHH
T ss_pred HHHHHHHHCCCEEEE--EeccHhHHHHHH---HHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccch-hHHHHHh
Confidence 999999999998855 999999997766 6665433 23443 5789999999988654 566776 5888866
Q ss_pred ccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCC
Q 002419 787 MSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHP 866 (925)
Q Consensus 787 l~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~ 866 (925)
++|| |+|+.|+||.+++++|+.+++. ++|++|++||.|+|.+....+-+++.
T Consensus 139 ----------~iP~----------~~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~p~~l~~~~~~~~~~~~~~------ 190 (324)
T 1umd_B 139 ----------HTAG----------LKVVAVSTPYDAKGLLKAAIRD--EDPVVFLEPKRLYRSVKEEVPEEDYT------ 190 (324)
T ss_dssp ----------TSTT----------CEEEECCSHHHHHHHHHHHHHC--SSCEEEEEEGGGSSSCCEECCSSCCC------
T ss_pred ----------cCCC----------CEEEEeCCHHHHHHHHHHHHhc--CCCEEEEechHhcCCCCCCcCCCCcc------
Confidence 5665 9999999999999999999975 89999999999998743222212221
Q ss_pred CCCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 867 GFDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 867 ~~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
.+-|....+ . +..+.+|+|+|..++..+++.+.+..=|
T Consensus 191 ---~~~Gk~~~~-~---------~g~dv~iva~G~~~~~a~~Aa~~L~~~G 228 (324)
T 1umd_B 191 ---LPIGKAALR-R---------EGKDLTLICYGTVMPEVLQAAAELAKAG 228 (324)
T ss_dssp ---CCTTCCEEE-E---------CCSSEEEEECGGGHHHHHHHHHHHHHTT
T ss_pred ---ccCCcceEE-e---------cCCCEEEEEecHHHHHHHHHHHHHHhcC
Confidence 111222222 1 2245799999999999999998885433
No 28
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=99.93 E-value=1.2e-25 Score=247.76 Aligned_cols=217 Identities=18% Similarity=0.197 Sum_probs=172.9
Q ss_pred ccHHHHHHHHHHHHHHcCCcEEEecccCCC--cccccccceeeecCCCceeccCCCccccCCCcceEEEcCCcchHHHHH
Q 002419 636 IDWALGEALAFATLLVEGNHVRLSGQDVER--GTFSHRHSVLHDQETGEQYCPLDHVMMNQDAEMFTVSNSSLSEFGVLG 713 (925)
Q Consensus 636 idw~~aE~lA~~~ll~~~~~v~l~GqDv~r--GtF~~RHav~~dq~t~~~y~pL~~l~~~~~~g~~rV~nspLSE~ailG 713 (925)
+.|..+-..++.+++.++++|++.|+|+++ |||+. | +++. ++||+.|++|++|||.+++|
T Consensus 3 ~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~---------~-------~~~~--~~~gp~r~~~~gIaE~~~v~ 64 (324)
T 1w85_B 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRA---------T-------EGLQ--AEFGEDRVFDTPLAESGIGG 64 (324)
T ss_dssp ECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTST---------T-------TTHH--HHHCTTTEEECCSCHHHHHH
T ss_pred chHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchh---------H-------HHHH--HHhCCCcEEEcchhHHHHHH
Confidence 567888999999999999999999999987 99976 4 7888 88999999999999999999
Q ss_pred HHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHh-hhhhhC----CcCCcEEEcCccCCCC-CccCCCchhhhhhhc
Q 002419 714 FELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNS-GESKWL----RQSGLVVMLPHGYDGQ-GPEHSSARLERFLQM 787 (925)
Q Consensus 714 ~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~-~~~kw~----~~~~lv~~lPhG~~G~-GpeHSs~R~ErfLql 787 (925)
+++|+|+.|.+|++ ++||++|+.-|. ||++.. +..+|. ...|+|+++|+|+.|. |+.||+ ..++|++
T Consensus 65 ~a~G~A~~G~rp~~--~~t~~~F~~~a~---dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~-~~~a~~~- 137 (324)
T 1w85_B 65 LAIGLALQGFRPVP--EIQFFGFVYEVM---DSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSD-SLEGLVA- 137 (324)
T ss_dssp HHHHHHHTTCEEEE--BCSSGGGGGGTH---HHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSC-CCHHHHT-
T ss_pred HHHHHHhCCCEEEE--EecchhHHHHHH---HHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccc-cHHHHHc-
Confidence 99999999999955 999999997666 666643 333454 5789999999988665 556666 5777754
Q ss_pred cCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCCcEEEEecccccCCCCCCCCcccccccCCCCC
Q 002419 788 SDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRKPLVVMSPKNLLRHKECKSNLSEFDDVQGHPG 867 (925)
Q Consensus 788 ~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~Pli~~~pK~Llr~~~~~s~~~~~~~~~~~~~ 867 (925)
++|| |+|+.|+||.+++++|+.+++. ++|++|++||.|+|.+....+.+++.
T Consensus 138 ---------~iP~----------l~V~~Psd~~e~~~~l~~a~~~--~~Pv~i~~p~~l~r~~~~~~~~~~~~------- 189 (324)
T 1w85_B 138 ---------QQPG----------LKVVIPSTPYDAKGLLISAIRD--NDPVIFLEHLKLYRSFRQEVPEGEYT------- 189 (324)
T ss_dssp ---------TSTT----------CEEECCSSHHHHHHHHHHHHHS--SSCEEEEEETTTSSSCCEECCSSCCC-------
T ss_pred ---------cCCC----------CEEEeeCCHHHHHHHHHHHHHc--CCCEEEEechHhcCCCCCCCCCcccc-------
Confidence 6776 9999999999999999999974 89999999999998744332222222
Q ss_pred CCCCCCceeEeecCCCCCCCCCCCccEEEEecchHHHHHHHHHHHhhhcc
Q 002419 868 FDKQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVSSAVCVALYFFYNFG 917 (925)
Q Consensus 868 ~~~~~~~F~~vi~d~~~~~~~~~~v~rvilcsGkvyydL~~~~~~~~~~~ 917 (925)
.+-|.++.+.++ -+.+|+|+|..++...++.+.+..-|
T Consensus 190 --~~~Gk~~~~~~g----------~dv~iva~G~~~~~a~~Aa~~L~~~G 227 (324)
T 1w85_B 190 --IPIGKADIKREG----------KDITIIAYGAMVHESLKAAAELEKEG 227 (324)
T ss_dssp --CCTTCCEEEECC----------SSEEEEECTTHHHHHHHHHHHHHHTT
T ss_pred --ccCCceEEEecC----------CCEEEEEecHHHHHHHHHHHHHHhcC
Confidence 122444443221 24699999999999999999886444
No 29
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.61 E-value=3.7e-16 Score=185.24 Aligned_cols=158 Identities=17% Similarity=0.144 Sum_probs=117.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||++|||+|. .| ++.|+.| ++| +++||.||+ ||+.+
T Consensus 420 g~~G~~l~~A~Gaala~~~---------~~vv~~~GDG~~~-~~--~~~l~~a~~~~lp------~~~vv~nN~~~~~~~ 481 (603)
T 4feg_A 420 ATMGVGIPGAIAAKLNYPE---------RQVFNLAGDGGAS-MT--MQDLATQVQYHLP------VINVVFTNCQYGFIK 481 (603)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHHH-HH--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred ccccchhHHHhhHHHhCCC---------CcEEEEeccHHHh-hh--HHHHHHHHHHCcC------eEEEEEECCchHHHH
Confidence 4589999999999998652 5699999999997 66 5557777 999 888888886 88722
Q ss_pred ----------CCCCCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEE---eecCCCCCCC
Q 002419 440 ----------DPMSGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVC---YRRFGHNEID 506 (925)
Q Consensus 440 ----------~~~~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~t---YR~~GHne~D 506 (925)
.........++.++|++||+|+++|| +++++.++.+.|++ .+.+||+|||++| ||.-+|...|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~ 557 (603)
T 4feg_A 482 DEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRL 557 (603)
T ss_dssp HHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCC
T ss_pred HHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchh
Confidence 11112234689999999999999998 55667666555542 1678999999999 6677899999
Q ss_pred CCC-CcCHH--HHHHHHhCCCHHHHHHHHHHHcCCCCHHHH
Q 002419 507 EPS-FTQPK--MYKIIRSHPSSLEIYQNKLLECQHVTQEDI 544 (925)
Q Consensus 507 dp~-ytqp~--ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~ 544 (925)
++. |+..+ ++.+++ ++||+.+|+++|.++|++++++.
T Consensus 558 ~~~~~~~~~~~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 558 DSAMSSAADIEAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp CTTTSCHHHHHHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred hhhhhhHHHHHHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 887 44332 555554 58999999999999999998753
No 30
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.43 E-value=1.1e-12 Score=159.06 Aligned_cols=454 Identities=14% Similarity=0.121 Sum_probs=246.0
Q ss_pred cccCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcch---HHHHHHhcCCCCCCcccEEEEEEeCCccc
Q 002419 361 ANPSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGV---VYETLHLSALPNYSIGGTIHIVVNNQVAF 437 (925)
Q Consensus 361 ~npShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~---v~EalnlA~LP~y~~GGvI~vV~NNq~g~ 437 (925)
...+.||.++++|+|+|+..+ +..++|++|||... +|. .||+.+++ ..|+.|-+|-|+.+|++.+
T Consensus 172 ~~tG~LGqGls~AvG~A~~~~---------~~~v~~~~GDGe~e-~GsLAg~wea~~~~--~~~~l~nl~~i~D~N~~~i 239 (845)
T 3ahc_A 172 HEGGELGYALSHAYGAVMNNP---------SLFVPCIIGDGEAE-TGPLATGWQSNKLV--NPRTDGIVLPILHLNGYKI 239 (845)
T ss_dssp CCCSSTTCHHHHHHHHHTTCT---------TCEEEEEEETTGGG-SHHHHHHGGGGGSC--CTTTSCEEEEEEEECSBSS
T ss_pred cCCCCccchHhHHhhhhhcCC---------CCeEEEEECCCchh-hhcchhhhHHhhhh--hhhcCCCEEEEEECCCCcC
Confidence 345679999999999996432 26899999999998 999 99998886 2233445999999999999
Q ss_pred ccCCCCCc-CcccHHHHHhhcCccEE-EEeC-C--CHHHHHHHHHHHHHH-----------HHc--cCCc--EEEEEEEe
Q 002419 438 TTDPMSGR-SSQYCTDVAKALDAPIF-HVNG-D--DMEAVAHVCELAAEW-----------RQT--FHSD--VVVDLVCY 497 (925)
Q Consensus 438 tT~~~~~r-ss~~~~d~Aka~giP~~-~VdG-~--D~eAV~~a~~~A~e~-----------rr~--~~~P--vlIe~~tY 497 (925)
+.++..++ +..++.++.++||+.++ .||| + |++++..++..|++. +++ .++| .+|-+.|.
T Consensus 240 ~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~ 319 (845)
T 3ahc_A 240 ANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTP 319 (845)
T ss_dssp SSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECC
T ss_pred CCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECc
Confidence 98876443 45778999999999999 9999 8 999999998776643 333 3689 99999998
Q ss_pred ecC-------CCCCCCCCCCcCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 002419 498 RRF-------GHNEIDEPSFTQPKMYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSEEFVASKDYVPNRR 570 (925)
Q Consensus 498 R~~-------GHne~Ddp~ytqp~ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a~~~A~~~~p~~~ 570 (925)
.-+ |....+.. +.|.-|+..-. -..+.++++....+. ++-.+-.. .+.
T Consensus 320 kG~tgp~~~~G~~~eg~~-----------~~H~~pl~~~~--------~~~~~~~~l~~wl~~-----~~p~elF~-~~~ 374 (845)
T 3ahc_A 320 KGWTCPKFIDGKKTEGSW-----------RAHQVPLASAR--------DTEEHFEVLKGWMES-----YKPEELFN-ADG 374 (845)
T ss_dssp TTTTSCSEETTEECTTSG-----------GGSSCSCTTTT--------TCHHHHHHHHHHHHH-----TCGGGTBC-TTS
T ss_pred ccCCCCCCCCCcccCCCc-----------cccCCCCCCcc--------cCHHHHHHHhhhccC-----CCchhccC-Cch
Confidence 888 76422211 11222211000 000111111110000 00000000 000
Q ss_pred chhhhhccCC-CCcccccccCCCCCChHHHHHHHhhh---hcCCCCCCcchhhHHHHHHHHHHhhcCCCccHHHHHHHHH
Q 002419 571 DWLSAYWSGF-KSPEQLSRIRNTGVKPEILKNVGKAI---TTLPENFKPHRGVKKVYELRAQMIETGEGIDWALGEALAF 646 (925)
Q Consensus 571 ~~~~~~w~~~-~~~~~~~~~~~t~v~~~~l~~i~~~~---~~~P~~f~~h~~l~~~~~~R~~~~~~~~~idw~~aE~lA~ 646 (925)
+.. ..|... +..... -...+ +.. +..+ ..+|+ |.-. .+.+ +.+. .-.......-. +-..++
T Consensus 375 ~~~-~~~~~~~~~g~~r----~~~~P-~~~---~g~l~~~~~lp~-~~~~-~~~~-~~~~--~~g~~~~~atr-a~g~~L 439 (845)
T 3ahc_A 375 SIK-DDVTAFMPKGELR----IGANP-NAN---GGVIREDLKLPE-LDQY-EVTG-VKEY--GHGWGQVEAPR-ALGAYC 439 (845)
T ss_dssp CBC-HHHHTTSCCGGGS----TTTCG-GGG---GGGTCCCCCCCC-GGGG-CCTH-HHHH--CTTEEEECTHH-HHHHHH
T ss_pred HHH-HHHHHhCcchHhH----hhhCH-Hhc---CCcCccccCCCC-hHhh-hccc-cccc--cCCccchhHHH-HHHHHH
Confidence 000 111111 000000 00000 000 0000 01121 1000 0000 0000 00000011111 112467
Q ss_pred HHHHHcCCc-EEEecccCCC--cccccccceeeecCCCcee----c--cCCCccccCCCcceEEEcCCcchHHHHHHHhh
Q 002419 647 ATLLVEGNH-VRLSGQDVER--GTFSHRHSVLHDQETGEQY----C--PLDHVMMNQDAEMFTVSNSSLSEFGVLGFELG 717 (925)
Q Consensus 647 ~~ll~~~~~-v~l~GqDv~r--GtF~~RHav~~dq~t~~~y----~--pL~~l~~~~~~g~~rV~nspLSE~ailG~~~G 717 (925)
..+...+++ +++.+-|... .|... . ..|++.+ . |=. -. ..+ ..|+++ -|+|.++.|+..|
T Consensus 440 ~~l~~~~p~~~vv~sADl~~Sn~t~~f-----~-~~t~~~~~~~~~~~P~d-~~--~~~-~GR~i~-GI~Eh~M~gia~G 508 (845)
T 3ahc_A 440 RDIIKNNPDSFRIFGPDETASNRLNAT-----Y-EVTDKQWDNGYLSGLVD-EH--MAV-TGQVTE-QLSEHQCEGFLEA 508 (845)
T ss_dssp HHHHHHSTTTEEEEESSCTTTTTCGGG-----G-GTCCEECCSCCCCTTTC-CS--EES-SCSEEE-CSCHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEecCCCccccHHHH-----H-hhcccccccccccCCcc-cc--cCC-CCcEee-eecHHHHHHHHHH
Confidence 888999999 9999999753 22110 0 0122211 1 210 00 111 368999 9999999999999
Q ss_pred hcCCCCCcceeechhhhhhHhhHHHHHHHHH-Hh-hhhhhCCcC-CcEEEcCc-cC--CCCCccCCCchhhhhhhccCCC
Q 002419 718 YSMENPNSLVMWEAQFGDFANGAQVIFDQFV-NS-GESKWLRQS-GLVVMLPH-GY--DGQGPEHSSARLERFLQMSDDN 791 (925)
Q Consensus 718 ~s~~g~~~lviwEaqFgDF~~~aq~~idq~i-~~-~~~kw~~~~-~lv~~lPh-G~--~G~GpeHSs~R~ErfLql~~~~ 791 (925)
|++.|..+++--=+.|..|.-.+..|---|| .+ ...-|.... ++.+++-| |+ +--||.|-.--++..+-+-
T Consensus 509 lal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ~~e~~d~l~~~--- 585 (845)
T 3ahc_A 509 YLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQDPGVTSLLINK--- 585 (845)
T ss_dssp HHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGCCCTHHHHHGGG---
T ss_pred HHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCCCcHHHHHHHHh---
Confidence 9999987766333556655565554311012 22 345576654 57777777 33 2348888763234332211
Q ss_pred CCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHhccCCC-cEEEEecccccCCCCCCCCcc----cccccCCCC
Q 002419 792 PYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIHREFRK-PLVVMSPKNLLRHKECKSNLS----EFDDVQGHP 866 (925)
Q Consensus 792 ~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~~~~~~-Pli~~~pK~Llr~~~~~s~~~----~~~~~~~~~ 866 (925)
.|..+| ||.|+.|+.+.....+++.++.. ++ |.+++..|.=+ |. .-+.+ .+..
T Consensus 586 --r~~~iP----------n~~V~~PaDanet~~a~~~al~~--~~~~~v~v~sRq~~--p~-~~~~~~a~~~~~~----- 643 (845)
T 3ahc_A 586 --TFNNDH----------VTNIYFATDANMLLAISEKCFKS--TNKINAIFAGKQPA--PT-WVTLDEARAELEA----- 643 (845)
T ss_dssp --CCTTCC----------CEEEEECCSHHHHHHHHHHHHHC--BSCEEEEECCCSCE--EE-CSCHHHHHHHHHH-----
T ss_pred --hccCCC----------CeEEEeCCCHHHHHHHHHHHHHc--CCCeEEEEecCCCC--Cc-cCCchhhhhhhcC-----
Confidence 011345 59999999999999999999986 44 55555344321 11 00111 2222
Q ss_pred CCCCCCCceeEeec----CCCCCCCCCCCccEEEEecc-hHHHHHHHHHHHhhh
Q 002419 867 GFDKQGTRFKRLIK----DQNEHSDLEEGIRRLILCSG-KVSSAVCVALYFFYN 915 (925)
Q Consensus 867 ~~~~~~~~F~~vi~----d~~~~~~~~~~v~rvilcsG-kvyydL~~~~~~~~~ 915 (925)
|.. |+. |.. .++-+-||+||| -+-.+.++|.+.+..
T Consensus 644 ------G~~--v~~~as~d~~-----g~~~DVvLiAtGsev~~EAL~AA~~L~~ 684 (845)
T 3ahc_A 644 ------GAA--EWKWASNAEN-----NDEVQVVLASAGDVPTQELMAASDALNK 684 (845)
T ss_dssp ------SEE--ECTTTCCCSS-----TTTCSEEEEEESHHHHHHHHHHHHHHHH
T ss_pred ------CeE--EEEeeccccc-----CCCCCEEEEEeccHHHHHHHHHHHHHHh
Confidence 222 333 210 112456999999 667767777777654
No 31
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.07 E-value=1e-10 Score=138.26 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=92.7
Q ss_pred cCCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-Ccccc
Q 002419 363 PSHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFT 438 (925)
Q Consensus 363 pShlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~t 438 (925)
-+.+|.++|.|+|+++|.+. ..+||+.|||+|. .+ .+.|+.+ +|| +++||.|| +||++
T Consensus 412 ~g~mG~~l~~AiGaala~~~---------~~vv~i~GDG~~~-~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~ 473 (590)
T 1v5e_A 412 FATMGIAIPGGLGAKNTYPD---------RQVWNIIGDGAFS-MT--YPDVVTNVRYNMP------VINVVFSNTEYAFI 473 (590)
T ss_dssp SCCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHHH-HH--GGGHHHHHHTTCC------CEEEEEECSSCTTG
T ss_pred CCcccChHHHHHHHHHhCCC---------CeEEEEEechHHh-ch--HHHHHHHHHhCCC------CEEEEEECCchHHH
Confidence 36699999999999999642 4699999999997 65 3556665 999 77777776 68988
Q ss_pred cCCCCC---------cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 439 TDPMSG---------RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 439 T~~~~~---------rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
...... ....++..+|++||+++++|+ +++++..+.+.|++..|+ ++|+|||+.|+|.
T Consensus 474 ~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~ 540 (590)
T 1v5e_A 474 KNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQD 540 (590)
T ss_dssp GGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSC
T ss_pred HHHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 643211 123678999999999999997 689999999999887654 7899999999975
No 32
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.02 E-value=1.6e-10 Score=137.33 Aligned_cols=117 Identities=25% Similarity=0.285 Sum_probs=92.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+++|.++|.|+|+++|.+. ..+||+.|||+|. .+ .++|+.+ +|| +++||.||+ ||+++
T Consensus 442 G~~G~~l~~AiGaala~~~---------~~vv~i~GDGs~~-~~--~~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 503 (616)
T 2pan_A 442 GPLGWTIPAALGVCAADPK---------RNVVAISGDFDFQ-FL--IEELAVGAQFNIP------YIHVLVNNAYLGLIR 503 (616)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------CEEEEEEEHHHHH-HT--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEcchhhh-CC--HHHHHHHHHhCCC------eEEEEEECCcchHHH
Confidence 6699999999999999752 5799999999997 55 3455555 999 777777775 88753
Q ss_pred CC--------------CC--CcC----cccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 440 DP--------------MS--GRS----SQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 440 ~~--------------~~--~rs----s~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
.. .. ... ..++..+|++||+++++|+ |++++..+.+.|++++++.++|+|||+.|+|.
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~ 581 (616)
T 2pan_A 504 QSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERV 581 (616)
T ss_dssp HHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSC
T ss_pred HHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence 20 11 011 2578899999999999997 67899999999998887788999999999985
Q ss_pred C
Q 002419 500 F 500 (925)
Q Consensus 500 ~ 500 (925)
.
T Consensus 582 ~ 582 (616)
T 2pan_A 582 T 582 (616)
T ss_dssp C
T ss_pred c
Confidence 4
No 33
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.98 E-value=1e-10 Score=136.38 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=86.8
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+++|.++|.|+|+++|.+. ..+||+.|||+|. .+ +|+|+.+ +|| +++||.||+ ||+.+
T Consensus 401 g~~G~~l~~A~G~a~a~~~---------~~vv~~~GDG~~~-~~--~~~l~~a~~~~l~------~~ivv~nN~~~~~~~ 462 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEPE---------RQVIAVIGDGSAN-YS--ISALWTAAQYNIP------TIFVIMNNGTYGALR 462 (528)
T ss_dssp CCTTSHHHHHHHHHHHCTT---------SCEEEEEEHHHHT-TT--GGGHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEECCcHHH-hh--HHHHHHHHHhCCC------eEEEEEeCCcchHhH
Confidence 7899999999999999753 4599999999997 66 6677776 999 888888885 88865
Q ss_pred CC------CC----CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 DP------MS----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ~~------~~----~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
.. .. .....++..+|++||+++++|| +++++..+.+.| ++.++|+|||+.|.|
T Consensus 463 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 525 (528)
T 1q6z_A 463 WFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEA----LSAKGPVLIEVSTVS 525 (528)
T ss_dssp HHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHH----HTCSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHH----HHCCCcEEEEEEecC
Confidence 31 00 0124578999999999999998 456776655544 457899999999976
No 34
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.91 E-value=5e-10 Score=131.94 Aligned_cols=111 Identities=20% Similarity=0.197 Sum_probs=86.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+++|.++|.|+|+++|.+. ..+||+.|||+|. .+ .++|+.+ +|| +++||.||+ ||++.
T Consensus 436 g~mG~~l~~AiGaa~a~~~---------~~vv~i~GDG~~~-~~--~~~L~~a~~~~l~------~~ivv~NN~~~~~~~ 497 (573)
T 2iht_A 436 SSFGYGIPAAIGAQMARPD---------QPTFLIAGDGGFH-SN--SSDLETIARLNLP------IVTVVVNNDTNGLIE 497 (573)
T ss_dssp CCTTCHHHHHHHHHHHSTT---------SCEEEEEEHHHHH-HT--GGGHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred cccccHHHHHHHHHHhCCC---------CcEEEEEccHHHH-hH--HHHHHHHHHhCCC------eEEEEEECCcchhhH
Confidence 5699999999999999752 4699999999997 55 3566665 999 777777665 88766
Q ss_pred CC---------C--CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 DP---------M--SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ~~---------~--~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
.. . ......++..+|++||+++++|+ |++++..+.+.|+ +.++|+|||+.|+|
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 561 (573)
T 2iht_A 498 LYQNIGHHRSHDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGA----ELGRPFLIEVPVNY 561 (573)
T ss_dssp HHHHHHHSSCCGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHH----TSSSCEEEEEEBCC
T ss_pred HHHHHhcCCCcCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEECCC
Confidence 31 1 11223688999999999999997 7788877766665 46899999999998
No 35
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.90 E-value=4.2e-10 Score=132.41 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||+.|||+|. .+ +.| |+.+ +|| +++||.||+ ||++.
T Consensus 420 g~mG~~l~~AiGaala~~~---------~~vv~i~GDG~~~-~~-~~~-L~ta~~~~l~------~~ivv~nN~~~~~~~ 481 (566)
T 1ozh_A 420 QTMGVALPWAIGAWLVNPE---------RKVVSVSGDGGFL-QS-SME-LETAVRLKAN------VLHLIWVDNGYNMVA 481 (566)
T ss_dssp CCTTCHHHHHHHHHHHSTT---------SEEEEEEEHHHHH-HH-TTH-HHHHHHHTCC------EEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CCEEEEEcChHHh-cc-HHH-HHHHHHhCCC------cEEEEEECCchhHHH
Confidence 4599999999999999752 5799999999996 53 444 6555 999 888888885 88764
Q ss_pred CCC---------CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 440 DPM---------SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 440 ~~~---------~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
... ......++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.|+|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~~ 544 (566)
T 1ozh_A 482 IQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAM----DVDGPAVVAIPVDYR 544 (566)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHH----HSSSCEEEEEEBCCT
T ss_pred HHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeCCC
Confidence 210 11223678999999999999997 5678877777665 468999999999873
No 36
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.89 E-value=3.1e-10 Score=133.27 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=87.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+++|.+.++.+ ..+||++|||+|. .+ +.| |+.+ +|| +++||.||+ ||+++
T Consensus 413 g~mG~~l~~A~Gaala~~~~~~~-----~~vv~~~GDG~~~-~~-~~e-l~ta~~~~l~------~~ivv~nN~~~~~~~ 478 (563)
T 2vk8_A 413 GSIGFTTGATLGAAFAAEEIDPK-----KRVILFIGDGSLQ-LT-VQE-ISTMIRWGLK------PYLFVLNNDGYTIQK 478 (563)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTT-----CCEEEEEEHHHHH-HH-GGG-HHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hhhhhHHHHHHHHHHhCcccCCC-----CCEEEEEcchHhh-cc-HHH-HHHHHHcCCC------cEEEEEECCcchhhh
Confidence 66999999999999999876554 6799999999996 43 444 4444 999 777777775 88864
Q ss_pred CCC----C--CcCcccHHHHHhhcCcc---EEEEeCCCHHHHHHHHH-HHHHHHHccCCcEEEEEEEee
Q 002419 440 DPM----S--GRSSQYCTDVAKALDAP---IFHVNGDDMEAVAHVCE-LAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ~~~----~--~rss~~~~d~Aka~giP---~~~VdG~D~eAV~~a~~-~A~e~rr~~~~PvlIe~~tYR 498 (925)
... . .....++.++|++||++ +++|| +++++..+.+ .|++ ..++|+|||+.|++
T Consensus 479 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 479 LIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred hhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 211 0 11235788999999999 99998 5788877766 5542 24579999999975
No 37
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.88 E-value=9.2e-10 Score=129.34 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=86.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-Cccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~tT 439 (925)
+++|.++|.|+|+++|.+ +.+ ..+||+.|||+|. .+ +. +|+.+ +|| +++||.|| +||++.
T Consensus 419 g~~G~~l~~AiGaa~a~~--~~~-----~~vv~i~GDG~~~-~~-~~-~L~ta~~~~l~------~~ivv~nN~~~~~~~ 482 (563)
T 2uz1_A 419 GSMGVGFGTALGAQVADL--EAG-----RRTILVTGDGSVG-YS-IG-EFDTLVRKQLP------LIVIIMNNQSWGATL 482 (563)
T ss_dssp CCTTTHHHHHHHHHHHHH--HHT-----CEEEEEEEHHHHG-GG-TT-HHHHHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccChHHHHHHHHHHhh--CCC-----CeEEEEEccHHHh-CC-HH-HHHHHHHhCCC------eEEEEEeCCcchHHH
Confidence 569999999999999985 112 5799999999997 65 34 55555 999 77777666 588765
Q ss_pred CCC-------CCc----CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 DPM-------SGR----SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ~~~-------~~r----ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
... ... ...++..+|++||+++++|+ |++++..+.+.|++ .++|+|||+.|++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 483 HFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp HHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred HHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 311 111 23678999999999999996 68888887777764 5899999999974
No 38
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.84 E-value=5.3e-10 Score=132.15 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=86.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||+.|||+|. .+ .++|+.+ +|| +++||.||+ ||++.
T Consensus 424 g~mG~~l~~AiGaala~~~---------~~vv~i~GDG~~~-~~--~~~L~ta~~~~l~------~~ivv~nN~~~~~~~ 485 (589)
T 2pgn_A 424 GILGCGFPMALGAQLAEPN---------SRVFLGTGDGALY-YH--FNEFRVAVEHKLP------VITMVFTNESYGANW 485 (589)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHHH-HH--GGGHHHHHHTTCC------CEEEEEECSBCHHHH
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEeeHHHH-hh--HHHHHHHHHhCCC------eEEEEEECCCcccch
Confidence 5699999999999999752 4689999999997 55 3666666 999 777777776 88765
Q ss_pred CCC---------CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecC
Q 002419 440 DPM---------SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRF 500 (925)
Q Consensus 440 ~~~---------~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~ 500 (925)
... ......++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.|+|..
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~ 549 (589)
T 2pgn_A 486 TLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSKTQ 549 (589)
T ss_dssp HHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCSSS
T ss_pred HHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 311 11224689999999999999997 45677777666653 588999999998754
No 39
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.83 E-value=2.2e-09 Score=126.94 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=86.0
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-Cccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~tT 439 (925)
+++|.++|.|+|+++|.+. ..+||+.|||+|. .+ + ++|+.+ +|| +++||.|| +||++.
T Consensus 426 G~~G~~l~~AiGaala~~~---------~~vv~i~GDGs~~-~~-~-~~L~ta~~~~l~------~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 426 GAMGFGLPAAIGASVANPD---------AIVVDIDGDGSFI-MN-V-QELATIRVENLP------VKVLLLNNQHLGMVM 487 (590)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SCEEEEEEHHHHH-HT-T-THHHHHHHTTCC------EEEEEEECSBCHHHH
T ss_pred ccccchHHHHHHHHHhCCC---------CcEEEEEccchhh-cc-H-HHHHHHHHhCCC------cEEEEEECCcchHHH
Confidence 5699999999999999752 4699999999997 54 3 355555 999 77777777 488753
Q ss_pred CC-------C--CC---c------CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecC
Q 002419 440 DP-------M--SG---R------SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRF 500 (925)
Q Consensus 440 ~~-------~--~~---r------ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~ 500 (925)
.. . .. . ...++..+|++||+++++|+ |++++..+.+.|+ +.++|+|||+.|+|..
T Consensus 488 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~~~ 560 (590)
T 1ybh_A 488 QWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTML----DTPGPYLLDVICPHQE 560 (590)
T ss_dssp HHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHH----HSSSCEEEEEECCTTC
T ss_pred HHHHHhcCCccccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEecCCc
Confidence 10 0 00 1 13578999999999999997 6888888777765 3589999999999854
No 40
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.81 E-value=3.4e-09 Score=127.56 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=86.2
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||+.|||+|. . .+.| |+.+ +|| +++||.||+ ||+.+
T Consensus 513 G~mG~~lpaAiGaalA~p~---------~~Vv~i~GDGsf~-~-~~~e-L~ta~~~~l~------v~ivV~NN~~~g~~~ 574 (677)
T 1t9b_A 513 GTMGYGLPAAIGAQVAKPE---------SLVIDIDGDASFN-M-TLTE-LSSAVQAGTP------VKILILNNEEQGMVT 574 (677)
T ss_dssp CCTTCHHHHHHHHHHHCTT---------SEEEEEEEHHHHH-H-HGGG-HHHHHHHTCC------CEEEEEECSSCHHHH
T ss_pred chhhchHHHHHHHHHhCCC---------CeEEEEEeehHHh-c-cHHH-HHHHHHhCCC------eEEEEEeCCCchhhh
Confidence 5689999999999999642 6799999999996 4 3555 5554 999 776666665 88754
Q ss_pred CC------CC----CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecC
Q 002419 440 DP------MS----GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRF 500 (925)
Q Consensus 440 ~~------~~----~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~ 500 (925)
.. .. .....++..+|++||+++++|+ +++++..+.+.|++ .++|+|||+.|+|..
T Consensus 575 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 575 QWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKV 639 (677)
T ss_dssp HHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSC
T ss_pred hhhhhhcCCCcccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCc
Confidence 21 00 1124678999999999999996 68888887777663 588999999999843
No 41
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.80 E-value=1.4e-09 Score=127.28 Aligned_cols=112 Identities=16% Similarity=0.186 Sum_probs=84.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~ 440 (925)
+++|.++|.|+|+++|.+. ..+||+.|||+|. .+ +.|..+.+ +|| +++||.||+ ||++..
T Consensus 408 g~mG~~l~~A~G~a~a~~~---------~~vv~~~GDG~~~-~~-~~el~ta~~~~l~------~~ivv~nN~~~~~~~~ 470 (552)
T 1ovm_A 408 GSIGYTLAAAFGAQTACPN---------RRVIVLTGDGAAQ-LT-IQELGSMLRDKQH------PIILVLNNEGYTVERA 470 (552)
T ss_dssp CCTTHHHHHHHHHHHHCTT---------SCEEEEEEHHHHH-HH-TTHHHHHHHTTCC------CEEEEEESSSCHHHHH
T ss_pred HhhhhHHHHHHHHHHhCCC---------CcEEEEECchHHH-hH-HHHHHHHHHhCCC------CEEEEEECCCCeEEEe
Confidence 6799999999999999652 4699999999996 43 55544444 999 777777775 888742
Q ss_pred C----CC--CcCcccHHHHHhhcCc----cEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 P----MS--GRSSQYCTDVAKALDA----PIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ~----~~--~rss~~~~d~Aka~gi----P~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. .. .....++..+|++||+ ++++|+ +++++..+.+.| ++.++|+|||+.|++
T Consensus 471 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 532 (552)
T 1ovm_A 471 IHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKV----AHHERLSLIEVMLPK 532 (552)
T ss_dssp HSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHH----TTCSSEEEEEEECCT
T ss_pred eccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHH----HhCCCCEEEEEEcCc
Confidence 1 10 1123578899999999 999998 578887766655 456899999999986
No 42
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.77 E-value=2.6e-09 Score=125.74 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=83.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|.++|.|+|+|+|.+. ..+||++|||+|. ...+.|..+ +|| +++||.||+ |++..
T Consensus 422 g~mG~~l~~A~G~ala~~~---------~~vv~i~GDG~~~---~~~~~l~ta~~~~l~------~~ivv~nN~~~~~~~ 483 (565)
T 2nxw_A 422 AGMGFGVPAGIGAQCVSGG---------KRILTVVGDGAFQ---MTGWELGNCRRLGID------PIVILFNNASWEMLR 483 (565)
T ss_dssp CCTTCHHHHHHHHHHHTTT---------CCEEEEEEHHHHH---HHGGGGGGHHHHTCC------CEEEEEECSBCHHHH
T ss_pred ccccccchHHHHHHHhCCC---------CcEEEEEechHHH---hhHHHHHHHHHhCCC------CEEEEEECCCCcEEe
Confidence 4589999999999999642 4689999999995 333445444 999 677776665 88864
Q ss_pred CCC-----CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcE-EEEEEEee
Q 002419 440 DPM-----SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDV-VVDLVCYR 498 (925)
Q Consensus 440 ~~~-----~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~Pv-lIe~~tYR 498 (925)
... ......++..+|++||+++++|+ +++++..+.+.|++ .++|+ |||+.|+|
T Consensus 484 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 484 TFQPESAFNDLDDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp HHCTTCGGGBCCCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred eecccCCCCcCCCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 211 11234678999999999999997 67888887777664 46898 99999986
No 43
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.77 E-value=3.2e-09 Score=124.93 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-Cccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||+.|||+|. .+ +.| |+.+ +|| +++||.|| +||++.
T Consensus 425 g~mG~~l~~A~Gaala~~~---------~~vv~~~GDG~~~-~~-~~e-L~ta~~~~l~------~~ivv~nN~~~~~~~ 486 (570)
T 2vbf_A 425 GSIGYTFPAALGSQIADKE---------SRHLLFIGDGSLQ-LT-VQE-LGLSIREKLN------PICFIINNDGYTVER 486 (570)
T ss_dssp CCTTTHHHHHHHHHHHCTT---------SEEEEEEEHHHHH-HH-GGG-HHHHHHTTCC------CEEEEEESSSCHHHH
T ss_pred hhhhhhHHHHHHHHHhCCC---------CcEEEEEcchhhh-cC-HHH-HHHHHHcCCC------CEEEEEECCchHHHH
Confidence 5699999999999999652 5799999999996 53 444 5555 999 67666655 688765
Q ss_pred CCC---C---CcCcccHHHHHhhcCcc-----EEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 440 DPM---S---GRSSQYCTDVAKALDAP-----IFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 440 ~~~---~---~rss~~~~d~Aka~giP-----~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
... . .....++.++|++||++ +++|+ +++++..+.+.| +++.++|+|||+.|+|
T Consensus 487 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a---~~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 487 EIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEA---QADVNRMYWIELVLEK 551 (570)
T ss_dssp HHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHH---HHCTTSEEEEEEECCT
T ss_pred HHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHH---HhcCCCcEEEEEEcCc
Confidence 211 0 11235788999999999 89997 578887766654 3457889999999986
No 44
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.76 E-value=2.6e-09 Score=125.56 Aligned_cols=111 Identities=17% Similarity=0.191 Sum_probs=85.5
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-Cccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~tT 439 (925)
+.+|.++|.|+|+++|.+. ..+||+.|||+|. .+ +.| |+.+ ++| +++||.|| +||++.
T Consensus 409 g~mG~~l~~A~G~ala~~~---------~~vv~~~GDG~~~-~~-~~e-L~ta~~~~l~------~~ivv~nN~~~~~~~ 470 (566)
T 2vbi_A 409 GHIGWSVPSAFGNAMGSQD---------RQHVVMVGDGSFQ-LT-AQE-VAQMVRYELP------VIIFLINNRGYVIEI 470 (566)
T ss_dssp CCTTTHHHHHHHHHHTCTT---------SEEEEEEEHHHHH-HH-GGG-HHHHHHTTCC------CEEEEEECSSCHHHH
T ss_pred cchhhHHHHHHHHHHhCCC---------CcEEEEEcchHHH-hh-HHH-HHHHHHhCCC------cEEEEEECCcceEEE
Confidence 4599999999999999642 5799999999996 43 444 5554 999 66666655 688876
Q ss_pred CCCC----CcCcccHHHHHhhcCc-----cEEEEeCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEEEee
Q 002419 440 DPMS----GRSSQYCTDVAKALDA-----PIFHVNGDDMEAVAHVCELAAEWRQTF-HSDVVVDLVCYR 498 (925)
Q Consensus 440 ~~~~----~rss~~~~d~Aka~gi-----P~~~VdG~D~eAV~~a~~~A~e~rr~~-~~PvlIe~~tYR 498 (925)
.... .....++..+|++||+ ++++|+ +++++..+.+.|++ . ++|+|||+.|+|
T Consensus 471 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~----~~~gp~liev~~~~ 533 (566)
T 2vbi_A 471 AIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKA----NTRGPTLIECQIDR 533 (566)
T ss_dssp TTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred eeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHh----cCCCcEEEEEEeCc
Confidence 5331 1223578889999999 999997 68888887777654 3 789999999986
No 45
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.73 E-value=4.8e-09 Score=123.37 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=85.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEe-CCcccccC
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVN-NQVAFTTD 440 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~N-Nq~g~tT~ 440 (925)
+.+|.++|.|+|+++|.+. ..+||+.|||+|. . .+.|-...+ ++| +++||.| |+||++..
T Consensus 413 g~~G~~l~~A~G~ala~~~---------~~vv~i~GDGs~~-~-~~~el~ta~~~~l~------~~ivv~NN~~~~~~~~ 475 (568)
T 2wvg_A 413 GHIGWSVPAAFGYAVGAPE---------RRNILMVGDGSFQ-L-TAQEVAQMVRLKLP------VIIFLINNYGYTIEVM 475 (568)
T ss_dssp CCTTTHHHHHHHHHHHCTT---------SEEEEEEEHHHHH-H-HGGGHHHHHHTTCC------CEEEEEECSSCHHHHT
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEcChhHh-c-cHHHHHHHHHcCCC------cEEEEEECCcceEeee
Confidence 4599999999999999642 5799999999996 4 455543333 999 6666655 56888765
Q ss_pred CCC----CcCcccHHHHHhhcCc---------cEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 PMS----GRSSQYCTDVAKALDA---------PIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ~~~----~rss~~~~d~Aka~gi---------P~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
..+ .....++..+|++||+ +.++|+ +++++..+.+.|++. .++|+|||+.|+|
T Consensus 476 ~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 476 IHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp TSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred eccCCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 331 1223578999999999 899996 678888877777642 2789999999986
No 46
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.73 E-value=6.3e-09 Score=121.93 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=81.6
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeCC-ccccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNNQ-VAFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NNq-~g~tT 439 (925)
+.+|..+|.|+|+++|.+. ..+||+.|||+|. .+ +.| |+.+ ++| +++||.||+ ||+.+
T Consensus 406 g~mG~~l~~AiGaala~~~---------~~vv~i~GDGs~~-~~-~~~-L~ta~~~~l~------~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 406 GSMANAMPQALGAQATEPE---------RQVVAMCGDGGFS-ML-MGD-FLSVVQMKLP------VKIVVFNNSVLGFVA 467 (549)
T ss_dssp CCTTCHHHHHHHHHHHSTT---------SCEEEEEEHHHHH-HT-GGG-HHHHHHTTCC------CEEEEEECSBCCCC-
T ss_pred chhhhHHHHHHHHHHhCCC---------CcEEEEEccchhh-cc-HHH-HHHHHHhCCC------eEEEEEeCCccHHHH
Confidence 4589999999999999752 4599999999985 43 333 4444 999 666666665 88754
Q ss_pred CCCC---------CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 440 DPMS---------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 440 ~~~~---------~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
.... .....++..+|++||+++++|+ |++++..+.+.|+ +.++|+|||+.|.|.
T Consensus 468 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~~ 530 (549)
T 3eya_A 468 MEMKAGGYLTDGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAF----SIDGPVLVDVVVAKE 530 (549)
T ss_dssp -----------CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHH----HSSSCEEEEEEBCCC
T ss_pred HHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 2111 1123578999999999999996 6677777666665 458999999999774
No 47
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.64 E-value=4.2e-08 Score=115.39 Aligned_cols=112 Identities=12% Similarity=0.075 Sum_probs=83.4
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-c-cccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-V-AFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~-g~tT 439 (925)
+.+|.++|.|+|+++| .. ..+||++|||+|. . .+.|-...+ +|| +++||.||+ | ++..
T Consensus 426 g~~G~~l~~AiGaala-~~---------~~vv~i~GDGsf~-~-~~~el~ta~~~~l~------~~ivv~NN~~~~~~~~ 487 (568)
T 2c31_A 426 GVMGIGMGYCVAAAAV-TG---------KPVIAVEGDSAFG-F-SGMELETICRYNLP------VTVIIMNNGGIYKGNE 487 (568)
T ss_dssp TCSSCHHHHHHHHHHH-HC---------SCEEEEEEHHHHH-T-TGGGHHHHHHTTCC------EEEEEEESSBSSCSCC
T ss_pred ccccccHHHHHHHHhC-CC---------CcEEEEEcchHhh-c-cHHHHHHHHHhCCC------eEEEEEeCchhHHHHH
Confidence 3489999999999998 21 4689999999996 3 234433333 999 999999998 3 3332
Q ss_pred CC---CC---C-cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 440 DP---MS---G-RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 440 ~~---~~---~-rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
.. .. . ....++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.|+|.
T Consensus 488 ~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~ 548 (568)
T 2c31_A 488 ADPQPGVISCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAV----ASGKPCLINAMIDPD 548 (568)
T ss_dssp CCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHH----HHTSCEEEEEEBCTT
T ss_pred HHhhcCCcccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 11 00 0 234578999999999999997 6888888877776 357899999999874
No 48
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.63 E-value=1.9e-08 Score=118.20 Aligned_cols=109 Identities=17% Similarity=0.062 Sum_probs=76.3
Q ss_pred CcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCCc-ccccCC
Q 002419 365 HLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQV-AFTTDP 441 (925)
Q Consensus 365 hlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq~-g~tT~~ 441 (925)
+.|. +|.|+|+++| . + ..+||+.|||+|. -...|-.+.+ ++| +++||.||+. |+....
T Consensus 418 ~~G~-l~~A~Gaa~a-~----~-----~~vv~i~GDGsf~--~~~~eL~ta~~~~lp------v~ivv~NN~~~~~~~~~ 478 (556)
T 3hww_A 418 IDGL-LSTAAGVQRA-S----G-----KPTLAIVGDLSAL--YDLNALALLRQVSAP------LVLIVVNNNGGQIFSLL 478 (556)
T ss_dssp SSSH-HHHHHHHHHH-H----C-----CCEEEEEEHHHHH--HTGGGHHHHTTCSSC------EEEEEEESCC-------
T ss_pred cccH-HHHHHHHHhc-C----C-----CcEEEEEccHHhh--hcchhhHhhcccCCC------cEEEEEECCCCCcccCC
Confidence 3556 9999999998 2 2 4689999999995 3344432333 999 9999999984 554321
Q ss_pred -------C---CCcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 442 -------M---SGRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 442 -------~---~~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. ......++..+|++||++.++|+ +++++..+.+.| ++.++|+|||+.|.|
T Consensus 479 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a----~~~~gp~liev~~~~ 539 (556)
T 3hww_A 479 PTPQSERERFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADA----WRTPTTTVIEMVVND 539 (556)
T ss_dssp ----------CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHH----TTSSSEEEEEEECCS
T ss_pred CCcchhHHHhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHH----HhCCCCEEEEEECCc
Confidence 0 01134678999999999999997 567776655544 467899999999865
No 49
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.63 E-value=4.4e-08 Score=115.05 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-c-cccc
Q 002419 364 SHLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-V-AFTT 439 (925)
Q Consensus 364 Shlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~-g~tT 439 (925)
+++|.++|.|+|+++| .. ..+||+.|||+|. . .+.|....+ +|| +++||.||+ | ++..
T Consensus 421 g~~G~~l~~AiGaa~a-~~---------~~vv~i~GDGsf~-~-~~~el~ta~~~~l~------~~ivv~NN~~~~~~~~ 482 (564)
T 2q28_A 421 GVMGIGMGYAIGASVT-SG---------SPVVAIEGDSAFG-F-SGMEIETICRYNLP------VTIVIFNNGGIYRGDG 482 (564)
T ss_dssp TCTTCHHHHHHHHHHH-HC---------SCEEEEEEHHHHH-T-TGGGHHHHHHTTCC------EEEEEEECSBSSCSCC
T ss_pred CcccchHHHHHHHhhc-CC---------CcEEEEEcchHhh-c-cHHHHHHHHHhCCC------eEEEEEeCchhHHHHH
Confidence 4589999999999998 21 4699999999996 3 345544344 999 999999998 3 4432
Q ss_pred CC----C-CC----cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeec
Q 002419 440 DP----M-SG----RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRR 499 (925)
Q Consensus 440 ~~----~-~~----rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~ 499 (925)
.. . .. ....++..+|++||++.++|+ +++++..+.+.|+ +.++|+|||+.|.|.
T Consensus 483 ~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~~p~liev~~~~~ 545 (564)
T 2q28_A 483 VDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGI----QSRKPTIINVVIDPA 545 (564)
T ss_dssp CCTTSSCCCCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHH----HHTSCEEEEEEBCTT
T ss_pred HHHhccCCccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEeccc
Confidence 11 0 00 113578899999999999996 6888888877776 357899999999874
No 50
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.63 E-value=5.9e-09 Score=123.62 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=81.3
Q ss_pred CcccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc---CCCCCCcccEEEEEEeC-CcccccC
Q 002419 365 HLEAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS---ALPNYSIGGTIHIVVNN-QVAFTTD 440 (925)
Q Consensus 365 hlg~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA---~LP~y~~GGvI~vV~NN-q~g~tT~ 440 (925)
.+|..+|.|+|+++|. + ..+||+.|||+|. .+ +.| |+.+ +|| +++||.|| +||+...
T Consensus 456 ~ig~~l~~AiGaala~-----~-----~~vv~i~GDGsf~-~~-~~e-L~ta~~~~lp------~~ivv~NN~~~~i~~~ 516 (604)
T 2x7j_A 456 GIDGVVSSAMGVCEGT-----K-----APVTLVIGDLSFY-HD-LNG-LLAAKKLGIP------LTVILVNNDGGGIFSF 516 (604)
T ss_dssp CSSSHHHHHHHHHHHH-----T-----SCEEEEEEHHHHH-HT-GGG-GHHHHHHCCC------EEEEEEECSSCGGGGG
T ss_pred CcCcHHHHHHHHHhcC-----C-----CcEEEEEccHHHH-hH-HHH-HHHhhhcCCC------eEEEEEeCCCCccccc
Confidence 3788999999999993 1 4689999999996 54 455 5555 999 77777666 6887542
Q ss_pred CCC------------CcCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 441 PMS------------GRSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 441 ~~~------------~rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
... .....++..+|++||+++++|+ +++++..+.+.|+ +.++|+|||+.|.|
T Consensus 517 ~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 517 LPQASEKTHFEDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp SGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred CCCCccchhhHhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 210 0123578899999999999997 6788777655554 46899999999875
No 51
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=98.60 E-value=1.6e-08 Score=114.41 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=79.5
Q ss_pred eEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCccC-CC----CC
Q 002419 699 FTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHGY-DG----QG 773 (925)
Q Consensus 699 ~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG~-~G----~G 773 (925)
.+++.+. ||.+.+|.++|+|+.|.|+ +|+.++.+|.+ ++ |++...+ +...|+|++.+.+. .+ ..
T Consensus 65 ~~~i~~e-~E~~a~~~a~Gaa~aG~r~--~~~ts~~G~~~-~~---d~l~~aa----~~~~P~Vi~~~~~~~~~~g~~~~ 133 (395)
T 1yd7_A 65 GVVIQME-DEIASIAAAIGASWAGAKA--MTATSGPGFSL-MQ---ENIGYAV----MTETPVVIVDVQRSGPSTGQPTL 133 (395)
T ss_dssp CEEEECS-CHHHHHHHHHHHHHTTCCE--EEEEETTHHHH-HT---TTCC--------CCCCEEEEEEC-----------
T ss_pred cEEEEeC-CHHHHHHHHHHHHHhCCcE--EEEeCchHHHH-HH---HHHHHHH----hcCCCEEEEEeeCCCCCCCCCcc
Confidence 5777777 9999999999999999997 45998988877 55 4433222 45789999998754 22 34
Q ss_pred ccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEEecccccCC
Q 002419 774 PEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVMSPKNLLRH 849 (925)
Q Consensus 774 peHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~~pK~Llr~ 849 (925)
++||+. ++. ++.+.+ +.++.|+.|+||.+++++++.++. ..++.||++++|+.+...
T Consensus 134 ~~~sd~-~~~----------~~~~~g--------~~g~~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~ 192 (395)
T 1yd7_A 134 PAQGDI-MQA----------IWGTHG--------DHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHM 192 (395)
T ss_dssp ----------------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECHHHHHC
T ss_pred cchhHH-HHH----------HhccCC--------CcceEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcchhHhCe
Confidence 678876 553 234433 124999999999999999999983 224799999999987644
No 52
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.48 E-value=8.8e-08 Score=113.01 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=70.3
Q ss_pred ccccceeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccCC--
Q 002419 367 EAVDPVVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDP-- 441 (925)
Q Consensus 367 g~~~PvA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~~-- 441 (925)
++.+|.|+|+|++ + ..+||+.|||+|. -...|-...+ +|| +++||.||+ ||+....
T Consensus 439 ~g~l~~AiGaa~~------~-----~~vv~i~GDGsf~--~~~~eL~ta~~~~l~------~~ivv~NN~~~g~~~~~~~ 499 (578)
T 3lq1_A 439 DGVVSSALGASVV------F-----QPMFLLIGDLSFY--HDMNGLLMAKKYKMN------LTIVIVNNDGGGIFSFLPQ 499 (578)
T ss_dssp SSHHHHHHHHTTT------S-----SSEEEEEEHHHHH--HTGGGGHHHHHTTCC------EEEEEECCC----------
T ss_pred ccHHHHHHHHhcC------C-----CCEEEEEchHHHH--hhHHHHHhhccCCCC------eEEEEEECCcCcccccccc
Confidence 4468999999753 2 4599999999996 2334422222 999 898888885 7775421
Q ss_pred -C--C----C---cCcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEee
Q 002419 442 -M--S----G---RSSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYR 498 (925)
Q Consensus 442 -~--~----~---rss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR 498 (925)
. . . ....++..+|++||++.++|+ +++++..+.+.|+ +.++|+|||+.+.|
T Consensus 500 ~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 560 (578)
T 3lq1_A 500 ANEPKYFESLFGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKAS----YHKGLDIIEVKTNR 560 (578)
T ss_dssp ---------------CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHT----TSSSEEEEEEC---
T ss_pred ccccchhhhhccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 0 0 0 013578899999999999997 7788877666554 56899999998865
No 53
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.01 E-value=1.8e-05 Score=100.79 Aligned_cols=126 Identities=8% Similarity=-0.072 Sum_probs=92.7
Q ss_pred CccccCCCcceEEEcCCcchHHHHHHHhhhcCCCCCcceeechhhhhhHhhHHHHHHHHHHhhhhhhCCcCCcEEEcCcc
Q 002419 689 HVMMNQDAEMFTVSNSSLSEFGVLGFELGYSMENPNSLVMWEAQFGDFANGAQVIFDQFVNSGESKWLRQSGLVVMLPHG 768 (925)
Q Consensus 689 ~l~~~~~~g~~rV~nspLSE~ailG~~~G~s~~g~~~lviwEaqFgDF~~~aq~~idq~i~~~~~kw~~~~~lv~~lPhG 768 (925)
++. +.||..+++..+.||.+.+|..+|+|++|.|+++ ..-..-|. .+++.+.. ..+...|+||..+.+
T Consensus 46 g~~--~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t--~Ts~~Gl~----lm~e~l~~----~ag~~~P~Vi~va~R 113 (1231)
T 2c42_A 46 GRK--NIFGQTLTIREMQSEAGAAGAVHGALAAGALTTT--FTASQGLL----LMIPNMYK----ISGELLPGVFHVTAR 113 (1231)
T ss_dssp TCC--CTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEE--EECHHHHH----HHHHHHHH----HHHTTCCCEEEEEEC
T ss_pred CCc--hhcCCceEEEecCChHHHHHHHHHHHHcCChHhh--hccHHHHH----HHHHHHHH----HhCCCCCEEEEECCC
Confidence 444 5678889999999999999999999999999998 43222221 22344321 112358999999874
Q ss_pred C-CC----CCccCCCchhhhhhhccCCCCCcccCCCCchhccccccCeEEEEcCChhHHHHHHHHHHh--ccCCCcEEEE
Q 002419 769 Y-DG----QGPEHSSARLERFLQMSDDNPYVIPEMDSTLRTQIQECNWQIVNVTTPANYFHVLRRQIH--REFRKPLVVM 841 (925)
Q Consensus 769 ~-~G----~GpeHSs~R~ErfLql~~~~~~~~~~~pg~~~~~~~~~Nl~Vv~pstpa~~~hlLr~q~~--~~~~~Pli~~ 841 (925)
. -+ ..++||+. + +++.+| |.|+.|+||.++|+++..+.. ..++.|||++
T Consensus 114 ~g~~~glsi~~~hsd~-~-------------~ar~~G----------~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~ 169 (1231)
T 2c42_A 114 AIAAHALSIFGDHQDI-Y-------------AARQTG----------FAMLASSSVQEAHDMALVAHLAAIESNVPFMHF 169 (1231)
T ss_dssp CCCSSSBCCSCCSHHH-H-------------TTTTSS----------CEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CccCCCCcCCCchhhH-H-------------HHhcCC----------cEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 4 22 24788875 2 245566 999999999999999999832 3469999999
Q ss_pred ecccccCCC
Q 002419 842 SPKNLLRHK 850 (925)
Q Consensus 842 ~pK~Llr~~ 850 (925)
+++.++.|.
T Consensus 170 ~Dg~~~sh~ 178 (1231)
T 2c42_A 170 FDGFRTSHE 178 (1231)
T ss_dssp EETTTTTTC
T ss_pred ecCcccccc
Confidence 999888773
No 54
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=97.68 E-value=4.9e-05 Score=96.87 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=70.9
Q ss_pred cEEEEEEcCc-ccCCcchHHHHHHhc--CCCCCCcccEEEEEEeCC-cccccCCC------CC----------cCcccHH
Q 002419 392 NMAVLIHGDG-SFAGQGVVYETLHLS--ALPNYSIGGTIHIVVNNQ-VAFTTDPM------SG----------RSSQYCT 451 (925)
Q Consensus 392 ~v~v~~~GDG-A~sGqG~v~EalnlA--~LP~y~~GGvI~vV~NNq-~g~tT~~~------~~----------rss~~~~ 451 (925)
.-+|++.||| ++. --+.|-.+.+ ++| +++||.||+ ||++.-.. .. ...+++.
T Consensus 954 ~~Vv~i~GDG~~~~--mg~~eL~ta~~~~~~------v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~ 1025 (1231)
T 2c42_A 954 KSVWIFGGDGWAYD--IGYGGLDHVLASGED------VNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLA 1025 (1231)
T ss_dssp CEEEEEEEHHHHHT--TTHHHHHHHHHTTCS------CEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHH
T ss_pred CcEEEEeCcHHHHH--cchHHHHHHHHhCCC------eEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHH
Confidence 5799999999 664 3366666666 999 888888888 57764110 00 0125789
Q ss_pred HHHhhcCccEEEE-eC-CCHHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 452 DVAKALDAPIFHV-NG-DDMEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 452 d~Aka~giP~~~V-dG-~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
.+|++||++.+.+ .- .|++++..++++|++ .+||+|||+.+-
T Consensus 1026 ~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~----~~GP~lI~v~~~ 1069 (1231)
T 2c42_A 1026 RMVMTYGYVYVATVSMGYSKQQFLKVLKEAES----FPGPSLVIAYAT 1069 (1231)
T ss_dssp HHHHTTSSSEEEEECTTTCHHHHHHHHHHHHH----SSSCEEEEEECC
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHHHHHHh----cCCCEEEEEeec
Confidence 9999999999964 44 599999999888885 589999999963
No 55
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=72.37 E-value=7.6 Score=45.22 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=72.3
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCc-ccH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSS-QYC 450 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss-~~~ 450 (925)
.|.|.|++.. + ..++++..|=|+++.-..++|| .+.++| +|+|+-+-......... .-. .+.
T Consensus 56 ~A~Gyar~tg---~-----p~v~~~TsGpG~~N~~~~l~~A-~~~~~P------ll~itg~~~~~~~~~~~--~Q~~~d~ 118 (563)
T 2uz1_A 56 AAEGYARAGA---K-----LGVALVTAGGGFTNAVTPIANA-WLDRTP------VLFLTGSGALRDDETNT--LQAGIDQ 118 (563)
T ss_dssp HHHHHHHHHT---S-----CEEEEECTTHHHHTTHHHHHHH-HHHTCC------EEEEEEECCGGGTTSCC--TTCCCCH
T ss_pred HHHHHHHHhC---C-----CEEEEEccCccHHHHHHHHHHH-HhcCCC------EEEEeCCCCcccCCchh--hhhhccH
Confidence 4566666532 1 2677777888888877777775 456999 99998776543321111 112 356
Q ss_pred HHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 451 TDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 451 ~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.++.+.+--..++| .+++.+...+..|+..+..++ |||.|++-
T Consensus 119 ~~~~~~~tk~~~~v--~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP 162 (563)
T 2uz1_A 119 VAMAAPITKWAHRV--MATEHIPRLVMQAIRAALSAPRGPVLLDLP 162 (563)
T ss_dssp HHHHGGGCSEEEEC--CCGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHhhhhhceEEEc--CCHHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 66677666556666 478888899999999888876 99999874
No 56
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=71.23 E-value=5.6 Score=46.48 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=64.4
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++|| ...++| +|+|+-+-........ ...-+.+...+.+.+--....| .+++.
T Consensus 75 ~v~~~TsGpG~~N~~~~v~~A-~~~~~P------ll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k~~~~v--~~~~~ 144 (573)
T 2iht_A 75 QACWATLGPGMTNLSTGIATS-VLDRSP------VIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSKYAVEL--QRPHE 144 (573)
T ss_dssp EEEEECTTHHHHHHHHHHHHH-HHHTCC------EEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSSEEEEC--CSGGG
T ss_pred EEEEEccCchHHHHHHHHHHH-HhhCCC------EEEEcccCcccccCCc-CccccCCHHHHHHhHhhEEEEc--CCHHH
Confidence 677777788887755566666 345999 9999887654332110 1111235666666665555555 47888
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
+...++.|+..+..++ |||.|++-
T Consensus 145 ~~~~i~~A~~~A~~~~~GPV~l~iP 169 (573)
T 2iht_A 145 ITDLVDSAVNAAMTEPVGPSFISLP 169 (573)
T ss_dssp HHHHHHHHHHHHTBSSCCCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEec
Confidence 8899999999888886 99999985
No 57
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=70.94 E-value=11 Score=44.17 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=69.5
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCC-CCCcCcccH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDP-MSGRSSQYC 450 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~-~~~rss~~~ 450 (925)
.|.|.|++.. + ..+++|..|=|+++.-..++||. ..++| +|+|.-+-........ ..+ +.+.
T Consensus 58 ~A~GyAr~tg---~-----p~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~~~~~~~Q--~~d~ 120 (589)
T 2pgn_A 58 MVNGYNYVKD---R-----SAAVGAWHCVGNLLLHAAMQEAR-TGRIP------AVHIGLNSDGRLAGRSEAAQ--QVPW 120 (589)
T ss_dssp HHHHHHHHHT---S-----CCEEEEEEGGGGGGCHHHHHHHH-HTTCC------EEEEEEESCGGGTTCTTCSS--CCCG
T ss_pred HHHHHHHHHC---C-----CEEEEEecCchHHHHHHHHHHHH-hcCCC------EEEEecCCcccccCCCCccc--ccCh
Confidence 4566666532 1 37899999999999777777776 56999 9999877654322111 111 1233
Q ss_pred HHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 451 TDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 451 ~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.. .+.+---...| .+++.+...+..|+..+..++ |||.|++-
T Consensus 121 ~~-~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 163 (589)
T 2pgn_A 121 QS-FTPIARSTQRV--ERLDKVGEAIHEAFRVAEGHPAGPAYVDIP 163 (589)
T ss_dssp GG-GTTTSSEEEEC--CSGGGHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred hh-ccccEEEEeec--CCHHHHHHHHHHHHHHHhcCCCccEEEEeC
Confidence 33 33333334444 588888999999999888887 99999874
No 58
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=69.15 E-value=7.3 Score=45.48 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=69.4
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. + ..++++..|=|+++.-..++|| .+.++| +|+|+-+-....... ...-+.+..
T Consensus 63 ~A~Gyar~tg---~-----p~v~~~TsGpG~~N~~~~l~~A-~~~~vP------ll~itg~~~~~~~~~--~~~Q~~d~~ 125 (566)
T 1ozh_A 63 MAAAVGRITG---K-----AGVALVTSGPGCSNLITGMATA-NSEGDP------VVALGGAVKRADKAK--QVHQSMDTV 125 (566)
T ss_dssp HHHHHHHHHS---S-----CEEEEECSTHHHHTTHHHHHHH-HHHTCC------EEEEEEECCTTTC--------CCCHH
T ss_pred HHHHHHHHHC---C-----CEEEEEccChHHHHHHHHHHHH-HhcCCC------EEEEeCCCccccCCC--CcccccCHH
Confidence 4566666532 1 2677777799998866667766 344999 999987755432211 111123556
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.+.+.+--..+.| .+++.+...++.|+..+..++ |||.|++-
T Consensus 126 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP 168 (566)
T 1ozh_A 126 AMFSPVTKYAIEV--TAPDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp HHHGGGCSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHhheEEEc--CCHHHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 6666665556666 478888888999998888885 99999874
No 59
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=66.57 E-value=10 Score=44.34 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=69.4
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. + ..+++|..|=|+++.-..++||. ..++| +|+|+-+-....... ...-..+..
T Consensus 65 ~A~Gyar~tg---~-----p~v~~~TsGpG~~N~~~gv~~A~-~~~vP------ll~itg~~~~~~~g~--~~~Q~~d~~ 127 (590)
T 1ybh_A 65 AAEGYARSSG---K-----PGICIATSGPGATNLVSGLADAL-LDSVP------LVAITGQVPRRMIGT--DAFQETPIV 127 (590)
T ss_dssp HHHHHHHHHS---S-----CEEEEECTTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCGGGTTT--TCTTCCCHH
T ss_pred HHHHHHHHHC---C-----CEEEEeccCchHHHHHHHHHHHH-hhCCC------EEEEeCcCCccccCC--CcccccCHH
Confidence 4566666532 1 26778888888888555555543 34999 999987654322211 111123566
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.+.+.+--..+.| .+++.+.++++.|+..++.++ |||.|++-
T Consensus 128 ~~~~~~~k~~~~v--~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP 170 (590)
T 1ybh_A 128 EVTRSITKHNYLV--MDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp HHHGGGSSEEEEC--CCGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHhCeEEec--CCHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 6666665555555 478889999999999988875 89999984
No 60
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=65.32 E-value=11 Score=43.82 Aligned_cols=106 Identities=16% Similarity=0.111 Sum_probs=68.9
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccc-cCC--CCC---c
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDP--MSG---R 445 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~t-T~~--~~~---r 445 (925)
.|.|.|++.. - .++++..|=|+++.-..+.|| .+.++| +|+|+-+-..... +.. ... .
T Consensus 56 ~A~Gyar~tg----~-----~v~~~TsGpG~~N~~~gia~A-~~~~vP------ll~itg~~~~~~~~~~~~~~~~~g~~ 119 (568)
T 2wvg_A 56 SAEGYARAKG----A-----AAAVVTYSVGALSAFDAIGGA-YAENLP------VILISGAPNNNDHAAGHVLHHALGKT 119 (568)
T ss_dssp HHHHHHHHHS----C-----EEEEECTTTTHHHHHHHHHHH-HHTTCC------EEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred HHHHHHHhhC----C-----eEEEEeCCCCHHHHHHHHHHH-hhhCCC------EEEEeCCCChhHhccCcceeeecccc
Confidence 4666666532 2 678888888887755566664 355999 9999887654322 110 000 0
Q ss_pred CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 446 ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
...+...+.+.+---.+.|. +++.+...+..|+..+..++|||.|++-
T Consensus 120 ~~~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP 167 (568)
T 2wvg_A 120 DYHYQLEMAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIA 167 (568)
T ss_dssp CCCHHHHHHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred chHHHHHHHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 11245666676666677775 6777777777888777777899999984
No 61
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=62.50 E-value=7.2 Score=45.36 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=68.0
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. . ..++++..|=|+++.-..++|| .+.++| +|+|+-+-............-..+..
T Consensus 60 ~A~Gyar~tg---~-----pgv~~~TsGpG~~N~~~gi~~A-~~~~vP------ll~itg~~~~~~~~~~~~~~Q~~dq~ 124 (564)
T 2q28_A 60 AAAASGFLTQ---K-----PGICLTVSAPGFLNGLTALANA-TVNGFP------MIMISGSSDRAIVDLQQGDYEELDQM 124 (564)
T ss_dssp HHHHHHHHHS---S-----CEEEEECSHHHHHHHHHHHHHH-HHHTCC------EEEEEEECCHHHHHTTSCCTTCCCHH
T ss_pred HHHHHHHHhC---C-----CEEEEEccCchHHHHHHHHHHH-HhcCCC------EEEEeCCCCccccCCCCCccccccHH
Confidence 3556666532 1 2677777788887755556666 345999 99998875542211000111123555
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
++.+.+--..+.|+ +++.+...+..|+..+..+ .|||.|++-
T Consensus 125 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 167 (564)
T 2q28_A 125 NAAKPYAKAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLP 167 (564)
T ss_dssp HHHGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHhhheeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 66666666666664 7777888888899888875 489999874
No 62
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=62.03 E-value=11 Score=43.97 Aligned_cols=106 Identities=13% Similarity=0.111 Sum_probs=65.9
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccc-cCC--CCC---c
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDP--MSG---R 445 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~t-T~~--~~~---r 445 (925)
.|.|.|++.. - .++++..|=|+++.-..+.|+ .+.++| +|+|+-+-..... +.. ... .
T Consensus 56 ~A~Gyar~tg----~-----~v~~~TsGpG~~N~~~gia~A-~~~~vP------ll~itg~~~~~~~~~~~~~~~~~g~~ 119 (566)
T 2vbi_A 56 SAEGYARSNG----A-----AAAVVTFSVGAISAMNALGGA-YAENLP------VILISGAPNSNDQGTGHILHHTIGKT 119 (566)
T ss_dssp HHHHHHHHHS----C-----EEEEECTTTTHHHHHHHHHHH-HHTTCC------EEEEEEECCGGGTTTTCBCTTSCSSS
T ss_pred HHHHHHhhcC----C-----eEEEEeCCCCHHHHHHHHHHH-HhhCCC------EEEEECCCChHHhccCceeeeeccCc
Confidence 4666666532 2 677777788887755566664 346999 9999887554321 110 000 0
Q ss_pred CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 446 ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
...+...+.+.+--..+.|. +++.+...++.|+..+..++|||.|++-
T Consensus 120 ~~~d~~~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP 167 (566)
T 2vbi_A 120 DYSYQLEMARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIA 167 (566)
T ss_dssp CCTHHHHHHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred chHHHHHHHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 11245666777766777775 4555566666777777677799999984
No 63
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=58.80 E-value=19 Score=42.32 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=70.1
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. + .-.++++..|=|+++.-..++||.. .++| +|+|+-+-......... .-..+..
T Consensus 80 ~A~GyAr~tg---g----~~~v~~~TsGpG~~N~~~~l~~A~~-~~vP------lvvItg~~p~~~~~~~~--~Q~~d~~ 143 (616)
T 2pan_A 80 MAEGYTRATA---G----NIGVCLGTSGPAGTDMITALYSASA-DSIP------ILCITGQAPRARLHKED--FQAVDIE 143 (616)
T ss_dssp HHHHHHHHST---T----CCEEEEECSTHHHHTSHHHHHHHHH-TTCC------EEEEEEECCGGGTTTTC--TTCCCHH
T ss_pred HHHHHHHhcC---C----CceEEEeCCCchHHHHHHHHHHHHh-cCCC------EEEEecCCcccccCccc--ccccCHH
Confidence 4666666531 1 1256677788888876666666553 4999 99998876543321111 1123556
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.+++.+---.+.| .+++.+..+++.|+..++.++ |||.|++-
T Consensus 144 ~~~~~~tk~~~~v--~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP 186 (616)
T 2pan_A 144 AIAKPVSKMAVTV--REAALVPRVLQQAFHLMRSGRPGPVLVDLP 186 (616)
T ss_dssp HHHGGGSSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHHHHhhccc--CCHHHHHHHHHHHHHHHhcCCCceEEEEcc
Confidence 6777666666666 467888889999998888774 89999984
No 64
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=57.06 E-value=17 Score=42.41 Aligned_cols=107 Identities=11% Similarity=0.047 Sum_probs=63.7
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccc-cCCC--CCcCcc
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT-TDPM--SGRSSQ 448 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~t-T~~~--~~rss~ 448 (925)
.|.|.|++.. + ..+++|..|=|+++.-..++||.. .++| +|+|+-+-..... +... .+-...
T Consensus 74 ~A~GyAr~tg---k-----p~v~~~TsGpG~~N~~~gv~~A~~-~~vP------ll~itg~~~~~~~~~~~~~~~~~q~~ 138 (565)
T 2nxw_A 74 AADAAARYSS---T-----LGVAAVTYGAGAFNMVNAVAGAYA-EKSP------VVVISGAPGTTEGNAGLLLHHQGRTL 138 (565)
T ss_dssp HHHHHHHHHT---S-----CEEEEECTTHHHHTTHHHHHHHHH-TTCC------EEEEEEECCTTCC--CCCC-------
T ss_pred HHHHHHHHhC---C-----CeEEEECCCCCHHHHHHHHHHHHh-hCCC------EEEEeCCCChhhhccCcceeeeccch
Confidence 4666666532 1 267777778888886666666654 6999 9999877432211 1000 000011
Q ss_pred c-HHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 449 Y-CTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 449 ~-~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+ ..++.+.+--..+.|. +++.+...+..|+..+....|||.|++-
T Consensus 139 d~q~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 184 (565)
T 2nxw_A 139 DTQFQVFKEITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIP 184 (565)
T ss_dssp CHHHHHHTTSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hhHHHHHHhhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 2 4456666656666664 5555566666666666666799999986
No 65
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=55.21 E-value=13 Score=43.57 Aligned_cols=95 Identities=13% Similarity=0.020 Sum_probs=65.1
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++|| .+.++| +|+|+-+-..........+ ..+...+.+.+---.+.| .+++.
T Consensus 70 ~v~~~tsGpG~~N~~~gl~~A-~~~~vP------ll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~tk~~~~v--~~~~~ 138 (590)
T 1v5e_A 70 GVTVGSGGPGASHLINGLYDA-AMDNIP------VVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAVYNRRV--AYAEQ 138 (590)
T ss_dssp CEEEECTTHHHHTTHHHHHHH-HHHTCC------EEEEEEECCGGGTTTTCTT--CCCCHHHHHTTCSEEEEC--CSGGG
T ss_pred EEEEeCcChHHHHHHHHHHHH-HhcCCC------EEEEcCCCCcccCCCCccc--ccCHHHHHHhhccEEEEe--CCHHH
Confidence 677777898988876667775 446999 9999887654322111111 234455566554445555 58888
Q ss_pred HHHHHHHHHHHHHccC-CcEEEEEEEeec
Q 002419 472 VAHVCELAAEWRQTFH-SDVVVDLVCYRR 499 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~-~PvlIe~~tYR~ 499 (925)
+.+.++.|++.+..++ |||.| +..+.
T Consensus 139 ~~~~i~~A~~~A~~~~~GPV~l--iP~dv 165 (590)
T 1v5e_A 139 LPKLVDEAARMAIAKRGVAVLE--VPGDF 165 (590)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEE--EETTG
T ss_pred HHHHHHHHHHHHhcCCCceEEE--Eccch
Confidence 8899999999998888 99999 55554
No 66
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=55.09 E-value=20 Score=41.57 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=65.8
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. + ..+++|..|=|+++.-..++||. +.++| +|+|.-+-....-.. ...-..+..
T Consensus 56 ~A~GyAr~tg---~-----~~v~~~TsGpG~~N~~~gi~~A~-~~~vP------vl~itg~~~~~~~~~--~~~Q~~d~~ 118 (549)
T 3eya_A 56 AAGAEAQLSG---E-----LAVCAGSCGPGNLHLINGLFDCH-RNHVP------VLAIAAHIPSSEIGS--GYFQETHPQ 118 (549)
T ss_dssp HHHHHHHHHS---S-----CEEEEECTTHHHHTTHHHHHHHH-HTTCC------EEEEEEESCGGGTTS--CCTTCCCHH
T ss_pred HHHHHHHHhC---C-----CEEEEeCCCCcHhhhHHHHHHHH-hhCCC------EEEEeCCCchhhcCC--CCCCccCHH
Confidence 3556666532 1 26777788888888655666554 35999 999987643221111 111123455
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
++.+.+--....| .+++.+...+..|+..+....|||.|++-
T Consensus 119 ~~~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 160 (549)
T 3eya_A 119 ELFRECSHYCELV--SSPEQIPQVLAIAMRKAVLNRGVSVVVLP 160 (549)
T ss_dssp HHTSTTCSEEEEC--CSGGGHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHhhhhheEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 5555554445555 47777888888888888778899999973
No 67
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=52.43 E-value=26 Score=41.93 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. +..+++|..|=|+++.-..++||. +.++| +|+|+-+-....... ...-..+..
T Consensus 135 aAdGyAr~tG--------kpgvv~~TsGpG~~N~~~gia~A~-~d~vP------llvItG~~~~~~~g~--~a~Q~~Dq~ 197 (677)
T 1t9b_A 135 MAEGYARASG--------KPGVVLVTSGPGATNVVTPMADAF-ADGIP------MVVFTGQVPTSAIGT--DAFQEADVV 197 (677)
T ss_dssp HHHHHHHHHS--------SCEEEEECSTHHHHTTHHHHHHHH-HHTCC------EEEEEEECCTTTTTS--CCTTCCCHH
T ss_pred HHHHHHHHHC--------CCEEEEECCChHHHHHHHHHHHHH-HcCCC------EEEEeCCCChhhcCC--CCccccCHH
Confidence 4666666532 126788888888888655566554 33999 999987654322111 111123455
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
.+.+.+--..+.| .|++.+..+++.|+..+..+ .|||+|++-
T Consensus 198 ~i~~~~tk~~~~v--~~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 198 GISRSCTKWNVMV--KSVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp HHTGGGSSEEEEC--CSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhhhheeEEEEc--CCHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 5666555555555 48889999999999988887 489999996
No 68
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=52.19 E-value=12 Score=43.53 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=60.9
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++|| .+.++| +|+|+-+-............-..+...+.+.+---.+.| .+++.
T Consensus 74 gv~~~TsGpG~~N~~~~i~~A-~~~~vP------ll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v--~~~~~ 144 (568)
T 2c31_A 74 GVCLTVSAPGFLNGVTSLAHA-TTNCFP------MILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFRI--NSIKD 144 (568)
T ss_dssp EEEEECSHHHHHHHHHHHHHH-HHHTCC------EEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEEC--CSGGG
T ss_pred EEEEEcCCccHHHHHHHHHHH-HhcCCC------EEEEccCCCccccCCCCCcccccCHHHHHHhhhheeeec--CCHHH
Confidence 677777788887755555665 345999 999987754322110001111234555555555555555 47778
Q ss_pred HHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
+...+..|+..+..+ .|||.|++-
T Consensus 145 ~~~~i~~A~~~A~~~~~GPV~l~iP 169 (568)
T 2c31_A 145 IPIGIARAVRTAVSGRPGGVYVDLP 169 (568)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCceEEEeCC
Confidence 888889999888875 489999873
No 69
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=50.49 E-value=16 Score=43.05 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=65.5
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. + ..++++..|=|+++.-..++||. +.++| +|+|.-+-..........+ ..+..
T Consensus 84 aA~GyAr~tg---k-----pgv~~~TsGpG~~N~~~gia~A~-~~~vP------lv~ItG~~~~~~~g~~~~Q--~~d~~ 146 (604)
T 2x7j_A 84 FALGLAKAKQ---R-----PVLLICTSGTAAANFYPAVVEAH-YSRVP------IIVLTADRPHELREVGAPQ--AINQH 146 (604)
T ss_dssp HHHHHHHHHT---S-----CEEEEECSSHHHHTTHHHHHHHH-HHTCC------EEEEEEECCGGGSSSCCTT--CCCCT
T ss_pred HHHHHHHhhC---C-----CEEEEECChhHHHHHHHHHHHHh-hcCCC------EEEEeCCCCHHHhCCCCCC--cCcHH
Confidence 4566666532 1 36888888999998766777766 56999 9999876543221110011 12333
Q ss_pred HHHhhcCccEEEEe-CCCH-H---HHHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 452 DVAKALDAPIFHVN-GDDM-E---AVAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~Vd-G~D~-e---AV~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
.+.+.+---.+.|. .++. . .+..+++.|+..+..+ .|||.|++-
T Consensus 147 ~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 196 (604)
T 2x7j_A 147 FLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVP 196 (604)
T ss_dssp TTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcc
Confidence 34444544566664 2331 1 2677778888878775 589999985
No 70
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=47.02 E-value=21 Score=41.98 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCCHHH
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDDMEA 471 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D~eA 471 (925)
.++++..|=|+++.-..++||. +.++| +|+|+-.-....-. ....-..+..++.+.+-.-...|. +++.
T Consensus 77 gv~~~TsGpG~~N~~~gia~A~-~~~vP------vl~itG~~~~~~~~--~~~~Q~~d~~~~~~~~tk~~~~v~--~~~~ 145 (603)
T 4feg_A 77 GVCFGSAGPGGTHLMNGLYDAR-EDHVP------VLALIGQFGTTGMN--MDTFQEMNENPIYADVADYNVTAV--NAAT 145 (603)
T ss_dssp EEEEECTTHHHHTTHHHHHHHH-HTTCC------EEEEEEECCTTTTT--SCCTTCCCCGGGGTTTCSEEEECC--CSTT
T ss_pred eEEEecCCchHHHHHHHHHHHH-HcCCC------EEEEecCCcccccC--CCccccccHHHHhhhhceEEEEcC--CHHH
Confidence 6777777888888655566554 34999 99998653321110 001111233344444444445553 5555
Q ss_pred HHHHHHHHHHHHHccCCcEEEEEE
Q 002419 472 VAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 472 V~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
+.+.+..|+..+....|||.|++-
T Consensus 146 ~~~~i~~A~~~A~~~~GPV~l~iP 169 (603)
T 4feg_A 146 LPHVIDEAIRRAYAHQGVAVVQIP 169 (603)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeC
Confidence 666666666666666799999973
No 71
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=44.68 E-value=20 Score=41.67 Aligned_cols=106 Identities=10% Similarity=0.088 Sum_probs=61.9
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccc---cCCCC--Cc-
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFT---TDPMS--GR- 445 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~t---T~~~~--~r- 445 (925)
.|.|.|++.. - .++++..|=|+++.-..++||. +.++| +|+|+-+-..... ..... ..
T Consensus 57 ~A~Gyar~tg----~-----~v~~~TsGpG~~N~~~gia~A~-~~~~P------ll~itg~~~~~~~~~~~~~~~~~g~~ 120 (563)
T 2vk8_A 57 AADGYARIKG----M-----SCIITTFGVGELSALNGIAGSY-AEHVG------VLHVVGVPSISAQAKQLLLHHTLGNG 120 (563)
T ss_dssp HHHHHHHHHS----C-----EEEEEETTHHHHHHHHHHHHHH-HHTCC------EEEEEEECCHHHHHTTCCCTTSCSSS
T ss_pred HHHHHHHhhC----C-----cEEEEcCCCcHHHHHHHHHHHH-hhCCC------EEEEECCCChHHhhcccccccccCCc
Confidence 4666666542 2 6777777888877445555543 35999 9999876543221 00000 00
Q ss_pred CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 446 ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
...+..++.+.+--..+.|. +++.+.+.+..|+..+...+|||.|++-
T Consensus 121 ~~q~~~~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP 168 (563)
T 2vk8_A 121 DFTVFHRMSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLP 168 (563)
T ss_dssp CSSHHHHHHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred chHHHHHHhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEec
Confidence 01124556666666666664 5555555556666655556699999984
No 72
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=44.68 E-value=31 Score=34.10 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 002419 515 MYKIIRSHPSSLEIYQNKLLECQHVTQEDINKIQEKVNRILSE 557 (925)
Q Consensus 515 ey~~i~~~~dpi~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~ 557 (925)
-|+.| +.-+++-|++.|++|++|+++..++++++.+.
T Consensus 108 YYe~W------L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~ 144 (157)
T 2zzd_B 108 YYGRW------LLTAARILVDKQFVTLTELHNKIVEMRERVAS 144 (157)
T ss_dssp HHHHH------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhc
Confidence 36666 46788899999999999999999999888765
No 73
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=44.45 E-value=30 Score=32.50 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=32.9
Q ss_pred CccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCC
Q 002419 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH 502 (925)
Q Consensus 458 giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GH 502 (925)
|+-.+...|||.||...|.++.+..+|+|.|- +||-..|.
T Consensus 83 gvm~i~f~gddlea~ekalkemirqarkfagt-----vtytl~gn 122 (170)
T 4hhu_A 83 GVMVIVFEGDDLEALEKALKEMIRQARKFAGT-----VTYTLSGN 122 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCE-----EEEEECSS
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHHHHhhcce-----EEEEEeCC
Confidence 45567789999999999999999999999985 46666553
No 74
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=38.83 E-value=26 Score=40.24 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=63.4
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. . ..++++..|=|+++.-.-++|| ...++| +|+|+-+-..........+. ..+..
T Consensus 53 ~A~Gyar~tg---~-----~~v~~~tsGpG~~N~~~~l~~A-~~~~~P------ll~itg~~~~~~~~~~~~q~-~~d~~ 116 (528)
T 1q6z_A 53 IADGYAQASR---K-----PAFINLHSAAGTGNAMGALSNA-WNSHSP------LIVTAGQQTRAMIGVEALLT-NVDAA 116 (528)
T ss_dssp HHHHHHHHHT---S-----CEEEEEEHHHHHHHTHHHHHHH-HHTTCC------EEEEEEECCHHHHTTTCTTC-CTTGG
T ss_pred HHHHHHHHhC---C-----CEEEEEcCChHHHHHHHHHHHH-hhcCCC------EEEEeCCCcccccCCCcccc-cccHH
Confidence 4666666532 1 2667777788888766666774 455999 99998765432111100111 01233
Q ss_pred HHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccC-CcEEEEEE
Q 002419 452 DVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFH-SDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~-~PvlIe~~ 495 (925)
.+.+.+---..+| .+++.+...+..|+..+..++ |||.|++-
T Consensus 117 ~~~~~~~k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP 159 (528)
T 1q6z_A 117 NLPRPLVKWSYEP--ASAAEVPHAMSRAIHMASMAPQGPVYLSVP 159 (528)
T ss_dssp GSSTTSCSCEECC--SSGGGHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred HHHHHhhHhhhcC--CCHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 3333333333444 467777888888888888776 79999984
No 75
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=37.96 E-value=30 Score=38.67 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=34.5
Q ss_pred cCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCC
Q 002419 457 LDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHN 503 (925)
Q Consensus 457 ~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHn 503 (925)
++++++. -.++++++..+..|++.+.+.+.||++....+ . +|+
T Consensus 150 ~g~~vl~--p~~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~ 192 (395)
T 1yd7_A 150 HSLIVLS--PSTVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHM 192 (395)
T ss_dssp CCCEEEC--CCSHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHC
T ss_pred cceEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCe
Confidence 3555554 45899999999999999999999999998776 2 565
No 76
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=36.79 E-value=44 Score=31.42 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=55.9
Q ss_pred CccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCCCCCCCCCCc-CHHHHHHHHhCCCHHHHHHHHHHHc
Q 002419 458 DAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFT-QPKMYKIIRSHPSSLEIYQNKLLEC 536 (925)
Q Consensus 458 giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GHne~Ddp~yt-qp~ey~~i~~~~dpi~~y~~~Li~~ 536 (925)
|+-.+...|||.||...|.++.+..+|+|.|-| ||-..|..--- ..| -|+...+- +..=.++|.++
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv-----tytl~gn~l~i--~itgvpeqvrke------lakeaerl~~e 68 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV-----TYTLSGNRLVI--VITGVPEQVRKE------LAKEAERLKAE 68 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE-----EEEEETTEEEE--EEESCCHHHHHH------HHHHHHHHHHH
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE-----EEEEeCCEEEE--EEeCCcHHHHHH------HHHHHHHHHHh
Confidence 455677899999999999999999999999854 55544431100 000 12222111 11223344332
Q ss_pred --------------CC----CCHHHHHHHHHHHHHHHHHHHHHhh
Q 002419 537 --------------QH----VTQEDINKIQEKVNRILSEEFVASK 563 (925)
Q Consensus 537 --------------Gi----~t~ee~~~i~~e~~~~l~~a~~~A~ 563 (925)
|+ +..++++++++..++.+.+|.++|-
T Consensus 69 fni~v~y~imgsgsgvm~i~f~gddlea~ekalkemirqarkfag 113 (170)
T 4hhu_A 69 FNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAG 113 (170)
T ss_dssp HTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcc
Confidence 11 1236788888888888887776664
No 77
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=35.91 E-value=36 Score=28.72 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=30.0
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEEEeecCCC
Q 002419 462 FHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLVCYRRFGH 502 (925)
Q Consensus 462 ~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~tYR~~GH 502 (925)
++.-|+|.+|...|.++.+..+|+|.|- +||-.-|.
T Consensus 5 irfrgddleafekalkemirqarkfagt-----vtytldgn 40 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGT-----VTYTLDGN 40 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCE-----EEEEECSS
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcce-----EEEEecCC
Confidence 4568999999999999999999999984 46666553
No 78
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=35.35 E-value=53 Score=38.25 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=61.8
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHH
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCT 451 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~ 451 (925)
.|.|.|++.. + ..++++..|=|++|.-..++||. +.++| +|+|.-+-....-. ....-..+..
T Consensus 64 aAdGyAr~tG---~-----pgv~~~TsGpG~~N~~~gia~A~-~d~vP------ll~itG~~p~~~~g--~~~~Qe~d~~ 126 (578)
T 3lq1_A 64 FALGLAKASK---R-----PVVLLCTSGTAAANYFPAVAEAN-LSQIP------LIVLTADRPHELRN--VGAPQAMDQL 126 (578)
T ss_dssp HHHHHHHHHC---C-----CEEEEECSSHHHHTTHHHHHHHH-HTTCC------EEEEEEECCGGGTT--SSCTTCCCCT
T ss_pred HHHHHHHhhC---C-----CEEEEECCchhhhhhhHHHHHHH-hcCCC------eEEEeCCCCHHhhc--CCCCCCcCHh
Confidence 4556666532 1 36778888999888555555553 45999 99998654321110 0001111233
Q ss_pred HHHhhcCccEEEE-eCCCHHH----HHHHHHHHHHHHHcc-CCcEEEEEE
Q 002419 452 DVAKALDAPIFHV-NGDDMEA----VAHVCELAAEWRQTF-HSDVVVDLV 495 (925)
Q Consensus 452 d~Aka~giP~~~V-dG~D~eA----V~~a~~~A~e~rr~~-~~PvlIe~~ 495 (925)
++.+.+---.+.| +.++..+ +..++++|+..++.+ .|||.|++-
T Consensus 127 ~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP 176 (578)
T 3lq1_A 127 HLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFP 176 (578)
T ss_dssp TTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEE
T ss_pred hHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECc
Confidence 3334443344555 3455332 345777888877777 599999986
No 79
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=33.14 E-value=36 Score=39.52 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=61.9
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccccc-CC--CC--Cc-
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-DP--MS--GR- 445 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT-~~--~~--~r- 445 (925)
.|.|.|++. + - .++++..|=|+++.-..+.|| .+.++| +|+|+-........ .. .. ..
T Consensus 78 ~A~GyAr~t---G-~-----~v~~~tsGpG~~N~~~gi~~A-~~~~vP------lv~itg~~~~~~~~~~~~~~~~~~~~ 141 (570)
T 2vbf_A 78 MADGYARTK---K-A-----AAFLTTFGVGELSAINGLAGS-YAENLP------VVEIVGSPTSKVQNDGKFVHHTLADG 141 (570)
T ss_dssp HHHHHHHHH---S-C-----EEEEEETTHHHHHHHHHHHHH-HHTTCC------EEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred HHHHHHHHh---C-C-----eEEEEcCCCCHHHHHHHHHHH-hhhCCC------EEEEeCCCCHHHhhccccceeecccc
Confidence 466666653 1 2 677888888877644445544 344999 99999876643221 10 00 00
Q ss_pred CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 446 ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
...+..++.+.+--..+.|.- +.+...++.|+..+...+|||.|++-
T Consensus 142 ~~~~~~~~~~~~tk~~~~v~~---~~~~~~l~~A~~~A~~~~GPV~l~iP 188 (570)
T 2vbf_A 142 DFKHFMKMHEPVTAARTLLTA---ENATYEIDRVLSQLLKERKPVYINLP 188 (570)
T ss_dssp CCCHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred chHHHHHHhhhhEEEEEEECc---ccHHHHHHHHHHHHhhCCCCEEEEcc
Confidence 011245566666666777753 44555555566555556799999984
No 80
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=29.47 E-value=49 Score=33.83 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=37.2
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeC
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNG 466 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG 466 (925)
.++|++.|.|++. + ...+++.-..++. -++.||.|+. ..+..++|+.+|+|++.++-
T Consensus 5 ki~vl~sG~g~~~-~-~~l~~l~~~~l~~----~I~~Vit~~~------------~~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 5 RLAVFASGSGTNF-Q-AIVDAAKRGDLPA----RVALLVCDRP------------GAKVIERAARENVPAFVFSP 61 (212)
T ss_dssp EEEEECCSSCHHH-H-HHHHHHHTTCCCE----EEEEEEESST------------TCHHHHHHHHTTCCEEECCG
T ss_pred EEEEEEECCcHHH-H-HHHHHHHhCCCCC----eEEEEEeCCC------------CcHHHHHHHHcCCCEEEeCc
Confidence 6888989888875 3 3445554444431 1566666532 12567889999999998764
No 81
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=26.60 E-value=73 Score=36.70 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=58.8
Q ss_pred eeehhhhhhhhhcCCCCCCCcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCccccc-C--CCC--Cc-
Q 002419 372 VVIGKTRAKQYYSNDMDRTKNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTT-D--PMS--GR- 445 (925)
Q Consensus 372 vA~G~A~A~q~~~~d~~~~~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT-~--~~~--~r- 445 (925)
.|.|.|++.. - .++++..|=|+++.-.-+.|| .+.++| +|+|+-+-...... . ... ..
T Consensus 58 ~A~Gyar~tg----~-----~v~~~tsGpG~~N~~~gv~~A-~~~~~P------ll~itg~~p~~~~~~~~~~~~~~g~~ 121 (552)
T 1ovm_A 58 AADGYARCKG----F-----AALLTTFGVGELSAMNGIAGS-YAEHVP------VLHIVGAPGTAAQQRGELLHHTLGDG 121 (552)
T ss_dssp HHHHHHHHHS----C-----EEEEEETTHHHHHTHHHHHHH-HHTTCC------EEEEEEECCHHHHHHTCCCTTSCSSS
T ss_pred HHHHHHHhhC----C-----cEEEEccCCcHHHHHHHHHHH-hhhcCC------EEEEECCCCHHHHhcccccccccCCC
Confidence 4667777642 1 677777788876643444433 244999 99998765432210 0 000 00
Q ss_pred CcccHHHHHhhcCccEEEEeCCCHHHHHHHHHHHHHHHHccCCcEEEEEE
Q 002419 446 SSQYCTDVAKALDAPIFHVNGDDMEAVAHVCELAAEWRQTFHSDVVVDLV 495 (925)
Q Consensus 446 ss~~~~d~Aka~giP~~~VdG~D~eAV~~a~~~A~e~rr~~~~PvlIe~~ 495 (925)
...+..++.+.+-...+.|.- +.+...++.|+..+...+|||.|++-
T Consensus 122 ~~q~~~~~~~~~tk~~~~v~~---~~~~~~i~~A~~~a~~~~GPV~l~iP 168 (552)
T 1ovm_A 122 EFRHFYHMSEPITVAQAVLTE---QNACYEIDRVLTTMLRERRPGYLMLP 168 (552)
T ss_dssp CCSHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cHHHHHHHHHhheeEEEEEcc---ccHHHHHHHHHHHHHhCCCCEEEEee
Confidence 011245566666666777753 33444444555544445689999984
No 82
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=26.52 E-value=74 Score=32.53 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=46.2
Q ss_pred cEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCC---
Q 002419 392 NMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDD--- 468 (925)
Q Consensus 392 ~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D--- 468 (925)
.++|++.|.|++. -.+.+++.-..++ .-++.||.|+. .....++|+..|+|++.++-.+
T Consensus 3 rI~vl~SG~g~~~--~~~l~~l~~~~~~----~~i~~Vvs~~~------------~~~~~~~A~~~gIp~~~~~~~~~~~ 64 (216)
T 2ywr_A 3 KIGVLVSGRGSNL--QAIIDAIESGKVN----ASIELVISDNP------------KAYAIERCKKHNVECKVIQRKEFPS 64 (216)
T ss_dssp EEEEEECSCCHHH--HHHHHHHHTTSSC----EEEEEEEESCT------------TCHHHHHHHHHTCCEEECCGGGSSS
T ss_pred EEEEEEeCCcHHH--HHHHHHHHhCCCC----CeEEEEEeCCC------------ChHHHHHHHHcCCCEEEeCcccccc
Confidence 4666666877765 2344455444553 01667776642 1235678999999999876433
Q ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEEEe
Q 002419 469 MEAVAHVCELAAEWRQTFHSDVVVDLVCY 497 (925)
Q Consensus 469 ~eAV~~a~~~A~e~rr~~~~PvlIe~~tY 497 (925)
-++-... .++..++.+-|++| +..|
T Consensus 65 r~~~~~~---~~~~l~~~~~Dliv-~a~y 89 (216)
T 2ywr_A 65 KKEFEER---MALELKKKGVELVV-LAGF 89 (216)
T ss_dssp HHHHHHH---HHHHHHHTTCCEEE-ESSC
T ss_pred hhhhhHH---HHHHHHhcCCCEEE-EeCc
Confidence 2222222 22333455555554 5555
No 83
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=24.89 E-value=31 Score=26.37 Aligned_cols=18 Identities=33% Similarity=0.840 Sum_probs=15.9
Q ss_pred ccCCCHHHHHHHHHhhCC
Q 002419 208 MHISDREKCNWLRDKIET 225 (925)
Q Consensus 208 ~hi~~~~~~~Wl~~~iE~ 225 (925)
.|+.+.+.+.||++++|.
T Consensus 13 ~~~q~~~R~~WLq~~L~~ 30 (39)
T 1bwx_A 13 KHLNSMERVEWLRKKLQD 30 (39)
T ss_dssp SSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478999999999999984
No 84
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=22.39 E-value=1.1e+02 Score=31.49 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=33.6
Q ss_pred CcEEEEEEcCcccCCcchHHHHHHhcCCCCCCcccEEEEEEeCCcccccCCCCCcCcccHHHHHhhcCccEEEEeCCC
Q 002419 391 KNMAVLIHGDGSFAGQGVVYETLHLSALPNYSIGGTIHIVVNNQVAFTTDPMSGRSSQYCTDVAKALDAPIFHVNGDD 468 (925)
Q Consensus 391 ~~v~v~~~GDGA~sGqG~v~EalnlA~LP~y~~GGvI~vV~NNq~g~tT~~~~~rss~~~~d~Aka~giP~~~VdG~D 468 (925)
+.++|++.|.|+.. -...+++.-..++ .=++.||.|+.= .+..++|+.+|+|++.++-.+
T Consensus 9 ~ri~vl~SG~gsnl--~all~~~~~~~~~----~~I~~Vis~~~~------------a~~l~~A~~~gIp~~~~~~~~ 68 (215)
T 3kcq_A 9 LRVGVLISGRGSNL--EALAKAFSTEESS----VVISCVISNNAE------------ARGLLIAQSYGIPTFVVKRKP 68 (215)
T ss_dssp EEEEEEESSCCHHH--HHHHHHTCCC-CS----EEEEEEEESCTT------------CTHHHHHHHTTCCEEECCBTT
T ss_pred CEEEEEEECCcHHH--HHHHHHHHcCCCC----cEEEEEEeCCcc------------hHHHHHHHHcCCCEEEeCccc
Confidence 46888888666553 1222222111343 115666665421 123578999999999987543
No 85
>3di5_A DINB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.01A {Bacillus cereus atcc 10987}
Probab=21.67 E-value=2e+02 Score=27.08 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=52.6
Q ss_pred CcCHHHHHHHHHHH---hcCccccccccCCCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHhhc-
Q 002419 185 VQTLRSILTRLEQA---YCGSIGFEYMHISDREKCNWLRDKIETPTPMQYNRQRREVILDRLVWSTQFENFLA-TKWTT- 259 (925)
Q Consensus 185 ~~tl~eii~~L~~~---Ycg~ig~E~~hi~~~~~~~Wl~~~iE~~~~~~ls~e~~~~iy~~m~~ar~fE~~l~-~~~~~- 259 (925)
.+|+++++.++-.+ ++..++-++. .+ ........+.++++..|+... ..+.+++. ..-..
T Consensus 40 ~~Si~~ll~Hi~~~~~~~~~~~~~~~~---~~----------~~~~~~~~s~~eL~~~~~~~~--~~~~~~l~~~l~~~~ 104 (168)
T 3di5_A 40 HWTLGRVAWHIVTAIPVILSGTGLKFE---GE----------TKDYPVPTSAKTIADGYRKVN--TAFVEALQSEWTDKD 104 (168)
T ss_dssp SCBHHHHHHHHHHHHHHHHGGGTCCCC---CC----------CCCCSCCSCHHHHHHHHHHHH--HHHHHHHHHHCCGGG
T ss_pred CCCHHHHHHHHHHHHHHHHhccCcCCC---CC----------CccCCCCCCHHHHHHHHHHHH--HHHHHHHHhcCCHHH
Confidence 46899998887544 3333332210 00 000112346777777766443 23444444 22111
Q ss_pred -cccccccCcc-chHHHHHHHHHHHhhcCCCcEEEcCCccchHHHHHHhcCCCHH
Q 002419 260 -AKRFGLEGGE-TLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLR 312 (925)
Q Consensus 260 -~Krfg~eG~E-a~i~gl~~~l~~a~~~gv~D~vigm~HRgrln~La~vlg~p~~ 312 (925)
.+.+...|.+ +....+.+++.. ...|||.+.++.+.+|.++.
T Consensus 105 L~~~~~~~g~~~t~~~~l~~~~~H-----------~~hHrGQi~~~lr~~G~~~P 148 (168)
T 3di5_A 105 LTTINDFFGRPMPNSIFLMTLINH-----------QNHHRGQMTVLMRQAGLTVP 148 (168)
T ss_dssp GGCEEEETTEEEEHHHHHHHHHHH-----------HHHHHHHHHHHHHHTTCCCC
T ss_pred HccccccCCCcccHHHHHHHHHhH-----------HHHhHHHHHHHHHHcCCCCC
Confidence 1222223433 444445555543 14899999999998887753
No 86
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=21.04 E-value=1.3e+02 Score=25.17 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 002419 526 LEIYQNKLLECQHVTQEDINKIQEKVNRILSEE 558 (925)
Q Consensus 526 i~~y~~~Li~~Gi~t~ee~~~i~~e~~~~l~~a 558 (925)
+..|++.|.++|..+.++++.-.+.+++.|.+.
T Consensus 25 ~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~ 57 (61)
T 2e62_A 25 LIEYRETLEEQGMKNPEEIERKVEINRKRLEVD 57 (61)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 556999999999999999999999999998754
Done!