Query 002421
Match_columns 925
No_of_seqs 228 out of 399
Neff 3.6
Searched_HMMs 29240
Date Tue Mar 26 01:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2equ_A PHD finger protein 20-l 96.9 0.0012 4.3E-08 57.8 6.1 46 710-757 9-54 (74)
2 1mhn_A SurviVal motor neuron p 96.9 0.0017 5.9E-08 53.8 6.4 46 713-758 6-52 (59)
3 3p8d_A Medulloblastoma antigen 96.8 0.0022 7.4E-08 55.7 6.4 44 712-757 8-51 (67)
4 4a4f_A SurviVal of motor neuro 96.8 0.0024 8.2E-08 53.9 6.4 47 712-758 10-57 (64)
5 2g3r_A Tumor suppressor P53-bi 96.8 0.0014 4.7E-08 62.5 5.4 47 708-755 2-48 (123)
6 3s6w_A Tudor domain-containing 96.7 0.003 1E-07 51.3 6.2 46 713-758 4-50 (54)
7 1g5v_A SurviVal motor neuron p 96.7 0.003 1E-07 57.1 6.6 47 712-758 12-59 (88)
8 3qii_A PHD finger protein 20; 96.5 0.004 1.4E-07 56.2 6.4 46 710-757 21-66 (85)
9 2l8d_A Lamin-B receptor; DNA b 96.4 0.0056 1.9E-07 52.9 6.3 45 712-756 11-55 (66)
10 2dig_A Lamin-B receptor; tudor 96.4 0.0064 2.2E-07 52.7 6.4 44 712-755 14-57 (68)
11 2ldm_A Uncharacterized protein 95.1 0.00095 3.2E-08 59.7 0.0 43 713-757 9-51 (81)
12 2d9t_A Tudor domain-containing 96.1 0.01 3.5E-07 52.0 6.5 53 712-766 11-64 (78)
13 2eqj_A Metal-response element- 96.1 0.011 3.7E-07 51.3 6.4 44 713-757 16-59 (66)
14 3pnw_C Tudor domain-containing 96.0 0.012 4.2E-07 51.6 6.6 47 712-758 19-66 (77)
15 1ssf_A Transformation related 95.9 0.009 3.1E-07 59.0 5.9 50 707-757 5-54 (156)
16 4hcz_A PHD finger protein 1; p 95.2 0.041 1.4E-06 46.6 6.4 44 713-757 6-49 (58)
17 2m0o_A PHD finger protein 1; t 93.9 0.07 2.4E-06 47.5 5.1 45 712-757 28-72 (79)
18 2eqk_A Tudor domain-containing 92.3 0.22 7.7E-06 45.0 6.1 50 713-764 24-73 (85)
19 2e5p_A Protein PHF1, PHD finge 91.8 0.34 1.2E-05 42.2 6.4 45 712-757 11-55 (68)
20 3fdr_A Tudor and KH domain-con 91.4 0.38 1.3E-05 42.6 6.5 46 712-758 29-75 (94)
21 2xk0_A Polycomb protein PCL; t 91.3 0.29 9.9E-06 42.8 5.5 43 712-757 17-59 (69)
22 2qk2_A LP04448P; mini spindles 91.1 3.5 0.00012 40.6 13.8 149 57-226 54-205 (242)
23 2e5q_A PHD finger protein 19; 90.6 0.37 1.3E-05 41.5 5.3 44 713-757 10-53 (63)
24 2wac_A CG7008-PA; unknown func 90.0 0.45 1.6E-05 46.9 6.4 43 713-757 54-97 (218)
25 2diq_A Tudor and KH domain-con 88.7 0.46 1.6E-05 43.3 5.0 46 712-758 34-80 (110)
26 2bpt_A Importin beta-1 subunit 88.2 3.4 0.00012 47.0 12.7 163 69-237 506-683 (861)
27 3oc3_A Helicase MOT1, MOT1; re 85.4 0.86 2.9E-05 53.7 5.8 146 69-242 307-452 (800)
28 1u6g_C TIP120 protein, CAND1; 84.0 12 0.00041 45.4 15.2 142 59-223 48-201 (1230)
29 3ntk_A Maternal protein tudor; 83.6 1.3 4.3E-05 43.2 5.4 42 711-753 48-90 (169)
30 1u6g_C TIP120 protein, CAND1; 83.6 5.3 0.00018 48.4 11.9 89 151-239 213-301 (1230)
31 1qgr_A Protein (importin beta 83.5 6.2 0.00021 45.0 11.7 26 69-94 416-441 (876)
32 4fdd_A Transportin-1; heat rep 82.9 3 0.0001 48.5 9.0 156 74-237 496-673 (852)
33 2hqx_A P100 CO-activator tudor 82.7 1.5 5.1E-05 44.5 5.7 43 713-757 68-111 (246)
34 3dlm_A Histone-lysine N-methyl 82.3 1.6 5.5E-05 45.3 5.7 55 706-760 64-122 (213)
35 2bpt_A Importin beta-1 subunit 82.2 11 0.00037 42.9 13.0 155 69-234 377-541 (861)
36 1ibr_B P95, importin beta-1 su 81.3 5.6 0.00019 41.4 9.6 109 60-185 91-203 (462)
37 4fdd_A Transportin-1; heat rep 81.2 2.7 9.2E-05 48.9 7.8 53 58-115 214-266 (852)
38 4b9w_A TDRD1, tudor domain-con 79.9 2.9 9.8E-05 41.6 6.5 50 713-765 68-118 (201)
39 2qk1_A Protein STU2; STU2P, XM 79.6 4.5 0.00015 41.2 8.0 163 58-235 59-234 (249)
40 4b9x_A TDRD1, tudor domain-con 77.0 3 0.0001 42.2 5.8 44 713-757 68-112 (226)
41 3h8z_A FragIle X mental retard 76.5 3.5 0.00012 39.6 5.7 51 712-766 62-119 (128)
42 2x1g_F Cadmus; transport prote 76.4 79 0.0027 37.4 18.3 53 74-136 706-759 (971)
43 2rnz_A Histone acetyltransfera 74.4 10 0.00036 34.8 8.0 54 696-751 11-66 (94)
44 1qgr_A Protein (importin beta 73.3 20 0.00067 40.9 11.7 157 69-236 374-551 (876)
45 4ffb_C Protein STU2; tubulin f 71.8 4.4 0.00015 41.1 5.5 76 32-110 157-241 (278)
46 1wgs_A MYST histone acetyltran 71.4 3.4 0.00012 39.7 4.3 50 712-769 14-67 (133)
47 4ffb_C Protein STU2; tubulin f 70.6 5.3 0.00018 40.5 5.8 140 69-221 63-207 (278)
48 1b3u_A Protein (protein phosph 69.7 16 0.00056 39.3 9.6 119 68-203 171-291 (588)
49 1wa5_C Importin alpha RE-expor 68.3 3.6 0.00012 49.0 4.5 36 56-93 493-528 (960)
50 3m1i_C Exportin-1; heat repeat 67.4 7.4 0.00025 46.9 7.0 38 55-94 536-573 (1049)
51 2x19_B Importin-13; nuclear tr 66.6 85 0.0029 36.9 15.4 96 74-184 698-801 (963)
52 2qk2_A LP04448P; mini spindles 65.9 25 0.00084 34.5 9.2 138 69-224 23-160 (242)
53 2eko_A Histone acetyltransfera 64.9 6.4 0.00022 35.6 4.4 53 709-769 8-66 (87)
54 1wa5_C Importin alpha RE-expor 64.9 40 0.0014 40.2 12.4 57 77-138 569-626 (960)
55 4b8j_A Importin subunit alpha- 64.6 65 0.0022 35.0 13.1 102 69-187 125-234 (528)
56 3bdl_A Staphylococcal nuclease 64.4 7.1 0.00024 44.8 5.7 45 712-758 413-458 (570)
57 1ibr_B P95, importin beta-1 su 63.7 41 0.0014 34.9 10.9 125 70-204 268-419 (462)
58 1w63_A Adapter-related protein 63.5 70 0.0024 36.5 13.6 124 56-204 271-396 (618)
59 1w63_A Adapter-related protein 63.0 47 0.0016 37.9 12.1 59 69-137 321-379 (618)
60 1b3u_A Protein (protein phosph 61.4 22 0.00076 38.2 8.6 27 69-95 410-436 (588)
61 2x1g_F Cadmus; transport prote 61.2 49 0.0017 39.1 12.2 84 151-238 501-588 (971)
62 2lcc_A AT-rich interactive dom 61.0 5.9 0.0002 34.8 3.3 38 711-748 6-47 (76)
63 2f5k_A MORF-related gene 15 is 60.8 9.6 0.00033 35.4 4.9 39 708-748 20-60 (102)
64 2ro0_A Histone acetyltransfera 57.8 19 0.00066 32.7 6.2 38 712-751 25-64 (92)
65 3u0r_A Apoptosis inhibitor 5; 57.1 81 0.0028 36.5 12.5 179 7-203 171-354 (507)
66 2x19_B Importin-13; nuclear tr 56.5 1.2E+02 0.0042 35.5 14.4 148 83-236 745-908 (963)
67 2xdp_A Lysine-specific demethy 55.9 13 0.00045 35.6 5.0 41 709-751 63-103 (123)
68 2qqr_A JMJC domain-containing 55.0 9.1 0.00031 36.5 3.8 40 711-752 6-45 (118)
69 2qqr_A JMJC domain-containing 54.9 18 0.00062 34.4 5.8 51 709-763 62-112 (118)
70 4b8j_A Importin subunit alpha- 54.2 2.1E+02 0.007 31.0 14.8 22 69-90 252-273 (528)
71 3tj1_A RNA polymerase I-specif 51.6 93 0.0032 37.0 12.2 150 24-204 108-261 (649)
72 2vgl_B AP-2 complex subunit be 50.7 16 0.00055 41.2 5.6 33 59-93 353-385 (591)
73 4h7y_A Dual specificity protei 50.3 96 0.0033 31.1 10.2 101 95-207 27-143 (161)
74 1vsy_4 Proteasome activator BL 50.0 1.4E+02 0.0049 36.0 13.7 116 78-203 399-564 (799)
75 2vgl_B AP-2 complex subunit be 48.7 27 0.00094 39.3 7.0 116 69-202 247-362 (591)
76 3ibv_A Exportin-T; karyopherin 48.2 63 0.0021 39.5 10.5 106 55-165 531-657 (980)
77 2lcd_A AT-rich interactive dom 52.9 4 0.00014 38.9 0.0 49 706-756 52-100 (118)
78 3ltm_A Alpha-REP4; protein eng 46.8 1.4E+02 0.0047 28.1 10.6 127 69-238 58-185 (211)
79 1wa5_B Importin alpha subunit; 46.3 88 0.003 34.1 10.4 62 69-137 307-370 (530)
80 3s6n_F Small nuclear ribonucle 44.5 54 0.0018 29.0 6.8 60 709-769 11-77 (86)
81 2bud_A Males-absent on the fir 43.5 49 0.0017 30.4 6.5 48 714-769 18-70 (92)
82 3bu8_A Telomeric repeat-bindin 42.5 27 0.00094 36.7 5.3 47 54-100 35-81 (235)
83 3tj1_A RNA polymerase I-specif 42.0 91 0.0031 37.1 10.1 108 81-202 354-468 (649)
84 2vgl_A Adaptor protein complex 41.7 95 0.0032 35.7 10.2 115 69-204 299-415 (621)
85 2qk1_A Protein STU2; STU2P, XM 41.4 1.4E+02 0.0049 30.1 10.4 144 69-226 24-175 (249)
86 2xdp_A Lysine-specific demethy 41.2 7.3 0.00025 37.4 0.8 41 710-752 6-46 (123)
87 1xqr_A HSPBP1 protein; armadil 39.7 1.1E+02 0.0037 32.2 9.4 60 68-137 89-154 (296)
88 3tpo_A Importin subunit alpha- 37.5 4.5E+02 0.015 28.9 16.0 99 28-137 90-191 (529)
89 2jdq_A Importin alpha-1 subuni 36.3 1.6E+02 0.0055 30.5 10.0 118 69-203 72-202 (450)
90 1y96_A Gemin6, SIP2, GEM-assoc 36.1 31 0.001 31.3 3.9 31 710-741 13-43 (86)
91 4hat_C Exportin-1; heat repeat 34.4 1.2E+02 0.0042 37.3 10.1 214 12-236 193-452 (1023)
92 1wa5_B Importin alpha subunit; 33.9 55 0.0019 35.7 6.3 124 69-204 223-352 (530)
93 3tpo_A Importin subunit alpha- 33.8 1.1E+02 0.0038 33.7 8.8 55 34-90 225-280 (529)
94 3a6p_A Exportin-5; exportin-5, 33.7 63 0.0021 40.2 7.4 85 151-237 529-628 (1204)
95 3dlm_A Histone-lysine N-methyl 33.4 46 0.0016 34.6 5.2 45 709-754 7-53 (213)
96 4db8_A Armadillo-repeat protei 33.3 3E+02 0.01 26.2 10.8 22 68-89 103-124 (252)
97 2vgl_A Adaptor protein complex 33.1 1.9E+02 0.0066 33.2 10.9 132 69-223 82-217 (621)
98 3sd4_A PHD finger protein 20; 33.0 81 0.0028 26.7 5.9 35 713-748 15-49 (69)
99 3ul1_B Importin subunit alpha- 32.2 85 0.0029 34.6 7.5 23 68-90 323-345 (510)
100 1n9r_A SMF, small nuclear ribo 31.2 43 0.0015 30.2 4.1 59 707-765 24-89 (93)
101 2of3_A ZYG-9; multifunctional 30.9 4.1E+02 0.014 28.0 12.1 76 156-232 168-246 (266)
102 3ask_A E3 ubiquitin-protein li 30.8 66 0.0023 33.6 5.9 50 713-762 5-64 (226)
103 2eqm_A PHD finger protein 20-l 30.2 1.2E+02 0.004 27.2 6.7 53 712-765 21-76 (88)
104 1i4k_A Putative snRNP SM-like 29.9 49 0.0017 28.2 4.0 56 710-766 10-72 (77)
105 1oyz_A Hypothetical protein YI 29.1 4.2E+02 0.014 25.9 13.4 21 69-89 31-51 (280)
106 3m1i_C Exportin-1; heat repeat 28.7 85 0.0029 37.9 7.3 41 74-116 247-290 (1049)
107 1ldd_A APC2WHB, anaphase promo 28.6 33 0.0011 30.2 2.8 30 84-113 27-60 (74)
108 2jdq_A Importin alpha-1 subuni 28.5 88 0.003 32.5 6.5 124 69-204 157-287 (450)
109 4hxt_A De novo protein OR329; 28.2 1.8E+02 0.006 27.4 8.0 117 69-203 10-138 (252)
110 4db6_A Armadillo repeat protei 27.8 1.5E+02 0.0051 27.6 7.4 58 69-136 20-82 (210)
111 4gmo_A Putative uncharacterize 26.0 8.1E+02 0.028 28.3 17.7 68 71-138 492-569 (684)
112 3s51_A Protein FACI, fanconi a 25.4 2.3E+02 0.0077 36.5 10.2 143 82-237 174-331 (1308)
113 3ul1_B Importin subunit alpha- 24.8 7.1E+02 0.024 27.2 16.5 62 69-137 108-172 (510)
114 4fu3_A Regulation of nuclear P 23.3 2.9E+02 0.0098 25.3 8.3 71 155-231 7-77 (135)
115 4emk_B U6 snRNA-associated SM- 22.8 72 0.0025 27.2 3.8 40 710-750 10-52 (75)
116 1mgq_A SM-like protein; LSM, R 22.7 68 0.0023 27.9 3.7 41 708-749 19-62 (83)
117 1h64_1 SnRNP SM-like protein; 22.7 73 0.0025 27.0 3.8 55 710-765 10-71 (75)
118 4emh_A Probable U6 snRNA-assoc 22.5 2.7E+02 0.0093 25.6 7.8 62 707-769 19-88 (105)
119 1i8f_A Putative snRNP SM-like 22.4 57 0.0019 28.2 3.1 36 710-746 17-55 (81)
120 1ljo_A Archaeal SM-like protei 22.4 81 0.0028 26.9 4.0 56 710-765 11-73 (77)
121 4gmo_A Putative uncharacterize 22.3 5.3E+02 0.018 29.8 12.1 94 55-163 34-134 (684)
122 1x5b_A Signal transducing adap 22.2 72 0.0025 31.2 4.1 68 164-232 24-91 (163)
123 2fhd_A RAD9 homolog, DNA repai 21.9 1.7E+02 0.0057 29.2 6.5 45 712-756 7-56 (153)
124 1d3b_B Protein (small nuclear 21.9 93 0.0032 27.3 4.4 34 706-740 6-39 (91)
125 2zhy_A ATP:COB(I)alamin adenos 21.5 70 0.0024 32.2 4.0 90 152-255 65-164 (183)
126 4emg_A Probable U6 snRNA-assoc 20.6 83 0.0028 28.2 3.9 32 708-740 13-44 (93)
127 3l6a_A Eukaryotic translation 20.2 1.4E+02 0.0047 32.7 6.2 74 8-94 180-253 (364)
No 1
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.93 E-value=0.0012 Score=57.84 Aligned_cols=46 Identities=15% Similarity=0.325 Sum_probs=39.6
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
.=-||.+|.-.|. |+.||.|+|++.+.. +...|.|+|+..|.|.+.
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~ 54 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM 54 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH
Confidence 3348999999999 999999999999975 789999999977877544
No 2
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.89 E-value=0.0017 Score=53.83 Aligned_cols=46 Identities=24% Similarity=0.494 Sum_probs=41.6
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecCc
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (925)
+|..|-.-|..|+.||.++|.+.++..+...|.|.| |..|.+.+..
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~ 52 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 52 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHH
Confidence 789999999999999999999999877899999998 9999887753
No 3
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.80 E-value=0.0022 Score=55.66 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=39.9
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
.||-+|---| .|..||+|+|++++.. +...|.|+||..|.|.+.
T Consensus 8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~ 51 (67)
T 3p8d_A 8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (67)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence 4899999999 9999999999999997 679999999999988765
No 4
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.76 E-value=0.0024 Score=53.92 Aligned_cols=47 Identities=23% Similarity=0.438 Sum_probs=42.0
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (925)
-+|..|...|..|+.||.++|.+.+...+...|.|.| |..|.+.+..
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~ 57 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN 57 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHH
Confidence 4899999999999999999999999888899999987 8888887653
No 5
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.76 E-value=0.0014 Score=62.51 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=39.7
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeee
Q 002421 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (925)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~ 755 (925)
.+.+++|.||-.-|+++.-||.|+|+.+ ....+.+|.+|||++..|.
T Consensus 2 ~~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 2 HMNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp ---CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CCccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCeeEee
Confidence 3678999999999998889999999995 6678999999999998664
No 6
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.68 E-value=0.003 Score=51.34 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=39.1
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecCc
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (925)
+|..|-..|..|+.||.|+|.+.++..+...|.|.| |..|.+.+..
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~ 50 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 50 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHH
Confidence 688999999999999999999999877888999987 9999887653
No 7
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.67 E-value=0.003 Score=57.06 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=42.1
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (925)
-||..|...|..|+.||.++|.+.+...+...|.|.| |..|.|.+..
T Consensus 12 kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~ 59 (88)
T 1g5v_A 12 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 59 (88)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHH
Confidence 4899999999999999999999999877899999986 8888887764
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.52 E-value=0.004 Score=56.24 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=41.0
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
.=.||-+|---| .|..||.|+|++++.. +...|.|+||..+.|...
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~ 66 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 66 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecHH
Confidence 345999999999 9999999999999997 689999999999987654
No 9
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=96.40 E-value=0.0056 Score=52.87 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=40.5
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeec
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNL 756 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L 756 (925)
.||-.|.--||.|..||+++|++++...--..|.|-||-+|.|.-
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~~ 55 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKE 55 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEEG
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeech
Confidence 378889999999999999999999998889999999988887743
No 10
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.36 E-value=0.0064 Score=52.68 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=40.4
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeee
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILN 755 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~ 755 (925)
.||-.|.--||.|+.||+++|++++...--..|.|-||-+|.|.
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~ 57 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELK 57 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEec
Confidence 38999999999999999999999998888999999998888764
No 11
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.09 E-value=0.00095 Score=59.75 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=37.9
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
+|.+|--.|. |+.||.|+|++.+.. +...|.|+||..|.|.+.
T Consensus 9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 7899999999 999999999999864 578999999999888655
No 12
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.09 E-value=0.01 Score=52.02 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=44.9
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecCcceEEEeeC
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKKERWELIKG 766 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~Ek~e~l~~ 766 (925)
-+|..|-..|..|+.||.++|...+.......|.|-| |..|.+.+. .++.+..
T Consensus 11 ~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~--~Lr~l~~ 64 (78)
T 2d9t_A 11 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS--NIKPVQT 64 (78)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG--GEEECCC
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH--HeEeCCH
Confidence 4899999999999999999999999877889999987 999988776 3455544
No 13
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.08 E-value=0.011 Score=51.25 Aligned_cols=44 Identities=23% Similarity=0.483 Sum_probs=41.2
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
||..|..-| .|..||.|+|+..|...+...|+|.||.+-|+...
T Consensus 16 vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 16 EGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp TTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred CCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 899999999 79999999999999999999999999999988654
No 14
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.00 E-value=0.012 Score=51.55 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=41.5
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLKK 758 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~~ 758 (925)
-+|..|-..|..|+.||.|+|.+.+...+...|.|.| |..|.+.+..
T Consensus 19 kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~ 66 (77)
T 3pnw_C 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSN 66 (77)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHH
Confidence 3799999999999999999999999877889999987 9988887653
No 15
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.91 E-value=0.009 Score=59.02 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=41.9
Q ss_pred ccccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
..|..+||.||---|.+++-||.|+|+.+ ....+.+|.+|||.+..|...
T Consensus 5 ~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 5 SSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp ---CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETT
T ss_pred CCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEeecc
Confidence 45788999999999999999999999997 556789999999999887643
No 16
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=95.15 E-value=0.041 Score=46.63 Aligned_cols=44 Identities=18% Similarity=0.421 Sum_probs=39.9
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
+|..|-+-|- |..||.|+|...|....+..|++.||.+-|+.+.
T Consensus 6 ~GedVLarws-DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 6 EGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEec-CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 6888999998 5899999999999998899999999999888664
No 17
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=93.87 E-value=0.07 Score=47.51 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=40.8
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
-+|..|=+-|- |..||.|+|+..+....+..|.|+||.+-|....
T Consensus 28 ~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 28 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 47888999998 8899999999999999999999999999988654
No 18
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.27 E-value=0.22 Score=45.04 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=44.4
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecCcceEEEe
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELI 764 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~~Ek~e~l 764 (925)
+|.-|.+..++|+.||.|.|..-++.++-|.+.||=|.++.+...+ .+-|
T Consensus 24 ~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~--LR~L 73 (85)
T 2eqk_A 24 NDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDC--LRKL 73 (85)
T ss_dssp SSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTT--EEEC
T ss_pred CCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccc--cccC
Confidence 7888999999999999999999999999999999999999998653 4444
No 19
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.82 E-value=0.34 Score=42.17 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=40.4
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
-+|..|-.-|- |..||.|+|+..+.......|.|.|+.+-|+...
T Consensus 11 ~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 11 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred ccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 37889999998 6999999999999999999999999999887654
No 20
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=91.36 E-value=0.38 Score=42.62 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.5
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-cCCcceeeecCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKK 758 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~~ 758 (925)
-+|.-|-+.|+.|+.||.|.|.+... .+.-.|.| |=|..|.+.+..
T Consensus 29 ~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~ 75 (94)
T 3fdr_A 29 HVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKD 75 (94)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHH
Confidence 48999999999999999999999975 35566776 568888877653
No 21
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=91.31 E-value=0.29 Score=42.79 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=36.6
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
-+|..|=+-|- |..||.|+|+. ..+.+..|+|+|.-+.|+.+.
T Consensus 17 ~~geDVL~rw~-DG~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 17 ALQEDVFIKCN-DGRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred ccCCeEEEEec-CCCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 47999999998 58999999965 447889999999999888765
No 22
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.08 E-value=3.5 Score=40.57 Aligned_cols=149 Identities=9% Similarity=0.146 Sum_probs=87.4
Q ss_pred hHHHHHhhhhhhcc-cCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHh
Q 002421 57 LLPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTV 135 (925)
Q Consensus 57 L~pl~k~LVs~~LL-kHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsL 135 (925)
+..++..|.. +| +.+|..||..++-||..|.+-..++ | ..++..|+..++..| .|+...--......|.++
T Consensus 54 ~~~i~~~L~~--~l~kd~~~~V~~~a~~~l~~la~~l~~~--~-~~~~~~ilp~ll~~l---~d~~~~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 54 YGALVSALKK--VITKDSNVVLVAMAGKCLALLAKGLAKR--F-SNYASACVPSLLEKF---KEKKPNVVTALREAIDAI 125 (242)
T ss_dssp CHHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHHGGG--G-HHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHHhhh--H-HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 3345444432 45 4788889999999999999876652 2 345666666666655 455544445556667666
Q ss_pred hhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHhhccCCCCCchH
Q 002421 136 AKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVRKENQDVSPTS 213 (925)
Q Consensus 136 AeVKS~VLMlDLe~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE--~VP~eVLDvIL~~fl~~~ks~~PaA 213 (925)
... +. +..++..++..+.... ..|......+|..++.... .+....+..|+..+..--.+..+.-
T Consensus 126 ~~~--------~~----~~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~V 192 (242)
T 2qk2_A 126 YAS--------TS----LEAQQESIVESLSNKN-PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192 (242)
T ss_dssp HTT--------SC----HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHc--------CC----HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHH
Confidence 552 12 2344555566556554 4788888899999887753 3444445555444443223444544
Q ss_pred HHHHHHHHHhhhH
Q 002421 214 WKLGEKVFTKCAA 226 (925)
Q Consensus 214 ykLA~~VI~~Cad 226 (925)
+.-|...+.....
T Consensus 193 R~~A~~~l~~l~~ 205 (242)
T 2qk2_A 193 RDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455444444333
No 23
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.55 E-value=0.37 Score=41.46 Aligned_cols=44 Identities=18% Similarity=0.371 Sum_probs=40.1
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~ 757 (925)
+|..|-.-|- |..||.|+|+..+....+..|.|.|+-+-|+...
T Consensus 10 eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 10 EGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp TTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 7889999998 8899999999999999999999999999887654
No 24
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=89.97 E-value=0.45 Score=46.92 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=37.3
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~ 757 (925)
+|..|-+.|..|+.||.|+|+.... ..-.|.|-| |..+.+.+.
T Consensus 54 ~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~ 97 (218)
T 2wac_A 54 RGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTN 97 (218)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGG
T ss_pred cCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchH
Confidence 7899999999999999999999987 677888855 999988654
No 25
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=88.70 E-value=0.46 Score=43.30 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=37.7
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-cCCcceeeecCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKK 758 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~~ 758 (925)
.+|.-|-+.|+.|..||.|+|..+++. +.-.|.| |=|..|.+.+..
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGG
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHH
Confidence 478999999999999999999999874 4566777 568998887653
No 26
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.23 E-value=3.4 Score=46.96 Aligned_cols=163 Identities=11% Similarity=0.106 Sum_probs=82.9
Q ss_pred cccCCC--cCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhccc--------CCCC-CcchhHHHHHHHHhhh
Q 002421 69 LLRRSD--MDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL--------SHAS-GRYYMKALSILDTVAK 137 (925)
Q Consensus 69 LLkHKD--kdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~L--------aD~s-sp~F~q~~yLLEsLAe 137 (925)
+|.+.| ..||..++.||..|.....++ ....+..++..++..|... .+.+ .....-+..+++.|..
T Consensus 506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 582 (861)
T 2bpt_A 506 AANRIDNEFNARASAFSALTTMVEYATDT---VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA 582 (861)
T ss_dssp HHTCSCCGGGHHHHHHHHHHHHHHHCCGG---GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCcchHHHHHHHHHHHHHHHHcchh---hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHH
Confidence 456555 689999999999999875443 1233455555555555432 1111 1222223344444443
Q ss_pred hceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc----CCCcHHHHHHHHHHhhccCCCCCchH
Q 002421 138 VRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES----EDVSWDLLRILLASVRKENQDVSPTS 213 (925)
Q Consensus 138 VKS~VLMlDLe~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeES----E~VP~eVLDvIL~~fl~~~ks~~PaA 213 (925)
+=.. +.-+....+..++..++..++...+..|.......+..++.-. ...-..++..|+..+...+......|
T Consensus 583 l~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a 659 (861)
T 2bpt_A 583 VIRK---SPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659 (861)
T ss_dssp HHHH---CGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHH---hhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3110 0112234556677777776665443134333333333333222 11223466666666643333334455
Q ss_pred HHHHHHHHHhhhHhHHHHHHHHHH
Q 002421 214 WKLGEKVFTKCAAKLKTNLKEAVQ 237 (925)
Q Consensus 214 ykLA~~VI~~CadKLqp~I~q~l~ 237 (925)
..+...++..+...+.+|+..++.
T Consensus 660 ~~~l~~l~~~~~~~~~~~~~~l~~ 683 (861)
T 2bpt_A 660 VGFIADISNSLEEDFRRYSDAMMN 683 (861)
T ss_dssp HHHHHHHHHHTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhchhccchHHHHHH
Confidence 556666777777777777655543
No 27
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=85.44 E-value=0.86 Score=53.67 Aligned_cols=146 Identities=12% Similarity=0.077 Sum_probs=100.3
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
-|...|-|||+.+|.||..|. ..+++..|+..+-++|..|.| =+++=..-+-||-.|-.... . +..
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---------~p~~l~~LL~iLWd~L~~LDD-LSASTgSVMdLLAkL~s~p~-~-a~~-- 372 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---------ITDSLDLVLEKCWKNIESEEL-ISVSKTSNLSLLTKIYRENP-E-LSI-- 372 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---------CSSTHHHHHHHHHHHHHTCCS-CCTTHHHHHHHHHHHHHHCT-T-CCC--
T ss_pred hcCCcccHHHHHHHHHhhhhc---------chhhHHHHHHHHHHHhhhhcc-cchhhHHHHHHHHHHHcCCc-c-ccc--
Confidence 345678999999999999988 236799999999999999965 45555555666666655542 1 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhhhHhH
Q 002421 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKL 228 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~CadKL 228 (925)
...|+..||--|... -..|+.+....|..++ -..++..|+++++=+.. ..-..++.+|...-..=+
T Consensus 373 dp~LVPRL~PFLRHt-----ITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~n---eeIl~lS~~VWk~r~~Ll 438 (800)
T 3oc3_A 373 PPERLKDIFPCFTSP-----VPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEK---DEIREMAIKLLKKRRDLP 438 (800)
T ss_dssp CSGGGGGTGGGGTCS-----SHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSC---HHHHHHHHHHHHTCSCCC
T ss_pred ChHHHHHHHhhhcCC-----cHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHH
Confidence 126666666544332 3568777777776666 67899999999874432 445667777765111118
Q ss_pred HHHHHHHHHhcCCC
Q 002421 229 KTNLKEAVQSRGIA 242 (925)
Q Consensus 229 qp~I~q~l~s~Gi~ 242 (925)
++.|+.+++-.|++
T Consensus 439 ~~wi~L~MtPIGv~ 452 (800)
T 3oc3_A 439 KNLILHFMNVIGGS 452 (800)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHhcCcCCCc
Confidence 99999999988887
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=84.04 E-value=12 Score=45.39 Aligned_cols=142 Identities=11% Similarity=0.085 Sum_probs=78.7
Q ss_pred HHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhh
Q 002421 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (925)
Q Consensus 59 pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeV 138 (925)
.+...|+. .|.+.+..||..++.||..|...+.+ .++..|+..++..| .|++... +......|+.+
T Consensus 48 ~il~~Ll~--~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l---~d~~~~v---R~~a~~~L~~i 113 (1230)
T 1u6g_C 48 KVVKMILK--LLEDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNM---LSDKEQL---RDISSIGLKTV 113 (1230)
T ss_dssp HHHHHHHH--HTTCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHT---TCSSSHH---HHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHh---cCCcHHH---HHHHHHHHHHH
Confidence 34444443 35689999999999999999975422 56777777776664 4544332 23333444433
Q ss_pred ceeeeeccCC--------chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-C-c--HHHHHHHHHHhhccC
Q 002421 139 RSCLLMLDLE--------CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-V-S--WDLLRILLASVRKEN 206 (925)
Q Consensus 139 KS~VLMlDLe--------~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~-V-P--~eVLDvIL~~fl~~~ 206 (925)
-. ++. ......+++..++..+.+.....+......++..+++.... + | ..++..++..|.
T Consensus 114 ~~-----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--- 185 (1230)
T 1u6g_C 114 IG-----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--- 185 (1230)
T ss_dssp HH-----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG---
T ss_pred HH-----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc---
Confidence 11 122 12345666666666665323456777777788888865422 2 2 344444444443
Q ss_pred CCCCchHHHHHHHHHHh
Q 002421 207 QDVSPTSWKLGEKVFTK 223 (925)
Q Consensus 207 ks~~PaAykLA~~VI~~ 223 (925)
...+.-+..|...|..
T Consensus 186 -~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 186 -SPRLAVRKRTIIALGH 201 (1230)
T ss_dssp -CSSHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHH
Confidence 3334444444444433
No 29
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=83.61 E-value=1.3 Score=43.24 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=34.6
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-cCCccee
Q 002421 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEI 753 (925)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~ 753 (925)
--+|.-|-+.|+.|+.||.|.|..+.+.. ...|.| |=|..+.
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEE
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEE
Confidence 34899999999999999999999999854 667777 4577776
No 30
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=83.58 E-value=5.3 Score=48.43 Aligned_cols=89 Identities=6% Similarity=0.107 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhhhHhHHH
Q 002421 151 KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKT 230 (925)
Q Consensus 151 dLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~CadKLqp 230 (925)
.+|..|++.+++......-..+..++..|+..+=......=.+++..|+..+...+....-.|......++..|...+.|
T Consensus 213 ~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 292 (1230)
T 1u6g_C 213 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP 292 (1230)
T ss_dssp THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHH
Confidence 45666666655431111223344455554443211111222468888888876554444456777777788888888888
Q ss_pred HHHHHHHhc
Q 002421 231 NLKEAVQSR 239 (925)
Q Consensus 231 ~I~q~l~s~ 239 (925)
|+.+++..+
T Consensus 293 ~l~~li~~l 301 (1230)
T 1u6g_C 293 HVSTIINIC 301 (1230)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 877766643
No 31
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.45 E-value=6.2 Score=44.97 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=21.2
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAP 94 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAP 94 (925)
+|.+.+..||..++.||..+...+.+
T Consensus 416 ~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 416 LMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 45777788999999999998888766
No 32
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.94 E-value=3 Score=48.53 Aligned_cols=156 Identities=9% Similarity=0.188 Sum_probs=88.1
Q ss_pred CcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCCchHHH
Q 002421 74 DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLV 153 (925)
Q Consensus 74 DkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe~ddLI 153 (925)
+......+.-||.-|.....+. -...+.+..|+..++..+..|.|.+...+ .+++.|+.+-..+- ..+-..+
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~~~~l~d~~~~~~----~~~~~l~~i~~~~g---~~~~~~~ 567 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQKWNMLKDEDKDLF----PLLECLSSVATALQ---SGFLPYC 567 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHHHHHSCTTCTTHH----HHHHHHHHHHHHHG---GGGHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHHHHhcccccHHHH----HHHHHHHHHHHHHh---HhHHHHH
Confidence 3334445667777776554332 12245677788888887778877554332 45666655532221 1222233
Q ss_pred HHHHHHHHHHhhcC---------------C-chhHHHHHHHHHHHHhcccCC-C-----cHHHHHHHHHHhhccCCCCCc
Q 002421 154 VEMFQHFLKVIRSN---------------H-PHFVFAAMETIMTLVIDESED-V-----SWDLLRILLASVRKENQDVSP 211 (925)
Q Consensus 154 ~eLFktFFdiVr~d---------------h-p~kV~~~M~dILs~VIeESE~-V-----P~eVLDvIL~~fl~~~ks~~P 211 (925)
..+|..++.+++.. . ...+.....+.+..++...+. + ...++..|+..+-.......-
T Consensus 568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~ 647 (852)
T 4fdd_A 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ 647 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHH
Confidence 34444443333311 1 233555555555555544421 1 135778887777544444455
Q ss_pred hHHHHHHHHHHhhhHhHHHHHHHHHH
Q 002421 212 TSWKLGEKVFTKCAAKLKTNLKEAVQ 237 (925)
Q Consensus 212 aAykLA~~VI~~CadKLqp~I~q~l~ 237 (925)
.|+.+-..++..|...+.+|+.+++.
T Consensus 648 ~a~~~l~~l~~~~~~~~~~~l~~~lp 673 (852)
T 4fdd_A 648 SSFALLGDLTKACFQHVKPCIADFMP 673 (852)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77888888888999999999888765
No 33
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=82.72 E-value=1.5 Score=44.53 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=35.8
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~ 757 (925)
+|.-|-+.|. |+.||.|.|+...+. ..-.|.|-| |..+.+.+.
T Consensus 68 ~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 111 (246)
T 2hqx_A 68 RGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPST 111 (246)
T ss_dssp TTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGG
T ss_pred CCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHH
Confidence 7999999999 999999999999864 467788765 999988543
No 34
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=82.27 E-value=1.6 Score=45.26 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=43.7
Q ss_pred CccccccccCeEEEeeCCCC--ceEEEEEEEecCCC--CeEEEEccCCcceeeecCcce
Q 002421 706 PALNEQLVGSRIKVWWPMDE--TFYKGVVDNYDPIK--KKHRILYADGDEEILNLKKER 760 (925)
Q Consensus 706 ~~~ge~lVG~RVkV~WP~D~--~wY~G~V~syd~~t--kkH~V~YDDGD~E~L~L~~Ek 760 (925)
...+.=.||.||-..|.+.. .||.|.|..-.... -++.|.||||...++.+..-.
T Consensus 64 p~~~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~V~ 122 (213)
T 3dlm_A 64 PPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELY 122 (213)
T ss_dssp CCGGGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGGEE
T ss_pred CCccEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCceEE
Confidence 33445569999999999764 79999999866543 379999999999988877544
No 35
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=82.18 E-value=11 Score=42.90 Aligned_cols=155 Identities=6% Similarity=0.014 Sum_probs=81.4
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
+|.+.+..+|-.++.||..|.+-+.|+ .-...+..|+..++. .|.|++...-....+.|.+++..-. -++.
T Consensus 377 ~l~~~~~~~r~~a~~~l~~i~~~~~~~--~~~~~l~~il~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~ 447 (861)
T 2bpt_A 377 NITADNWRNREAAVMAFGSIMDGPDKV--QRTYYVHQALPSILN---LMNDQSLQVKETTAWCIGRIADSVA----ESID 447 (861)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHH--HHHHHHHHHHHHHHH---GGGCSCHHHHHHHHHHHHHHHHHHG----GGSC
T ss_pred HcCCCChhHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHHHHhh----hhcC
Confidence 456788889988889999888543221 001234444444444 4455422122233455666655421 1232
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CC---cHHHHHHHHHHhhccC--CCCCchHHHHHH
Q 002421 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DV---SWDLLRILLASVRKEN--QDVSPTSWKLGE 218 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE-----~V---P~eVLDvIL~~fl~~~--ks~~PaAykLA~ 218 (925)
....+..++..++..+.++ ..|.......+..+++... .+ -..++..|+..+...+ ....-.++....
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT 525 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence 3445666666677666554 5677766666666665532 12 1345555555554322 122234555555
Q ss_pred HHHHhhhHhHHHHHHH
Q 002421 219 KVFTKCAAKLKTNLKE 234 (925)
Q Consensus 219 ~VI~~CadKLqp~I~q 234 (925)
.++..+...+.+|+.+
T Consensus 526 ~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 526 TMVEYATDTVAETSAS 541 (861)
T ss_dssp HHHHHCCGGGHHHHHH
T ss_pred HHHHHcchhhHHHHHH
Confidence 5666666655555444
No 36
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=81.33 E-value=5.6 Score=41.39 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=63.0
Q ss_pred HHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCC-Ccc-hhHHHHHHHHhhh
Q 002421 60 TMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHAS-GRY-YMKALSILDTVAK 137 (925)
Q Consensus 60 l~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~s-sp~-F~q~~yLLEsLAe 137 (925)
+...|+. +|.+.+..| ..+|-||+.|.+...|+.-| .+++.+++..+. +.. ++. -...+.+|..|.+
T Consensus 91 ik~~ll~--~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w-----~~ll~~L~~~l~---~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 91 VKNYVLQ--TLGTETYRP-SSASQCVAGIACAEIPVNQW-----PELIPQLVANVT---NPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHH--HTTCCCSSS-CSHHHHHHHHHHHHGGGTCC-----TTHHHHHHHHHH---CTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HhCCCCchh-hHHHHHHHHHHHHhcccccc-----HHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHH
Confidence 4444543 467788889 89999999999998775434 245555555543 221 222 1223444444443
Q ss_pred h-ceeeeeccCCchHHHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhc
Q 002421 138 V-RSCLLMLDLECDKLVVEMFQHFLKVIRSNH-PHFVFAAMETIMTLVID 185 (925)
Q Consensus 138 V-KS~VLMlDLe~ddLI~eLFktFFdiVr~dh-p~kV~~~M~dILs~VIe 185 (925)
- .. ++ -...+..+|..|+..+.... ...|+......+..++.
T Consensus 160 ~~~~-----~~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 160 DIDP-----EQ-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp HSCG-----GG-TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred hCCc-----hh-hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 11 00 23445567777777776553 46677777777776654
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.16 E-value=2.7 Score=48.86 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=37.6
Q ss_pred HHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhc
Q 002421 58 LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE 115 (925)
Q Consensus 58 ~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~ 115 (925)
..+...|.. ++.+.|.+||..++-||..|...+. + +-...|..|+.+++..+.
T Consensus 214 ~~~l~~l~~--~~~d~~~~vr~~a~~~L~~l~~~~~-~--~~~~~l~~l~~~l~~~~~ 266 (852)
T 4fdd_A 214 DSFIENLFA--LAGDEEPEVRKNVCRALVMLLEVRM-D--RLLPHMHNIVEYMLQRTQ 266 (852)
T ss_dssp HHHHHHHHH--HHTCCCHHHHHHHHHHHHHHHHHCH-H--HHGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHhCH-H--HHHHHHHHHHHHHHHHcc
Confidence 344444443 5678899999999999999998752 2 122457788888887765
No 38
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=79.94 E-value=2.9 Score=41.58 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=38.3
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-cCCcceeeecCcceEEEee
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLKKERWELIK 765 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~~Ek~e~l~ 765 (925)
+|.-+-+.|+.|+.||.|.|....+. +...|.| |=|..+.+.+. .++.+.
T Consensus 68 ~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~~--~l~~l~ 118 (201)
T 4b9w_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD--QLQAIL 118 (201)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECGG--GEEECC
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEHH--HhccCh
Confidence 68889999999999999999998764 4456666 56888877654 344443
No 39
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=79.60 E-value=4.5 Score=41.15 Aligned_cols=163 Identities=7% Similarity=0.100 Sum_probs=95.1
Q ss_pred HHHHHhhhhhhcc-cCCCcCceeehhhHHhhhhhhcC-CCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHh
Q 002421 58 LPTMKGLITNDLL-RRSDMDVRLSVTSCISEITRITA-PDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTV 135 (925)
Q Consensus 58 ~pl~k~LVs~~LL-kHKDkdVRayVAcCLADILRIyA-PDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsL 135 (925)
..+...|.. .| +.+|..|+..++-||..|.+-.+ |. |.-.....|+-.++..| .|....--....+.|.+|
T Consensus 59 ~~~~~~L~~--~l~~D~n~~v~~~A~~al~~la~~l~~~~--f~~~y~~~llp~ll~~l---~dkk~~V~~aa~~al~~i 131 (249)
T 2qk1_A 59 SNLLGIYGH--IIQKDANIQAVALAAQSVELICDKLKTPG--FSKDYVSLVFTPLLDRT---KEKKPSVIEAIRKALLTI 131 (249)
T ss_dssp HHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHHCTTT--SCHHHHHHHHHHHHHGG---GCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHhccccc--ccHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHH
Confidence 344444422 45 67788889889999999998777 66 32234444555555444 454433334556777777
Q ss_pred hhhceeeeeccC-C-chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCC--------cHHHHHHHHHHhhcc
Q 002421 136 AKVRSCLLMLDL-E-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDV--------SWDLLRILLASVRKE 205 (925)
Q Consensus 136 AeVKS~VLMlDL-e-~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~V--------P~eVLDvIL~~fl~~ 205 (925)
... +-- ... . -++|+..|| ..+.... ..|.......|..++..+... +..++..|+..+-..
T Consensus 132 ~~~--~~~-~~~~~~l~~ll~~l~----~~l~~k~-~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~ 203 (249)
T 2qk1_A 132 CKY--YDP-LASSGRNEDMLKDIL----EHMKHKT-PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT 203 (249)
T ss_dssp HHH--SCT-TCTTCTTHHHHHHHH----HHTTCSS-HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS
T ss_pred HHH--ccc-cccCCcHHHHHHHHH----HHHcCCC-hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 664 110 011 1 345555555 4444443 478888888899999888753 344555555555444
Q ss_pred CCCCCchHHHHHHHHHHhhhHh-HHHHHHHH
Q 002421 206 NQDVSPTSWKLGEKVFTKCAAK-LKTNLKEA 235 (925)
Q Consensus 206 ~ks~~PaAykLA~~VI~~CadK-Lqp~I~q~ 235 (925)
+....-+|+.....++...+.+ |.|++..+
T Consensus 204 ~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 204 QPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4444555555555566556554 77776653
No 40
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=77.05 E-value=3 Score=42.24 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=36.1
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEc-cCCcceeeecC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILY-ADGDEEILNLK 757 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~Y-DDGD~E~L~L~ 757 (925)
+|.-|-+.|+.|+.||.|.|....+. +...|.| |=|..+.+.+.
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH
Confidence 68889999999999999999998764 5566777 56888887654
No 41
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=76.48 E-value=3.5 Score=39.64 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=37.1
Q ss_pred cccCeEEEeeCCCC----ceEEEEEEEecCCCCeEEEEccCCc---ceeeecCcceEEEeeC
Q 002421 712 LVGSRIKVWWPMDE----TFYKGVVDNYDPIKKKHRILYADGD---EEILNLKKERWELIKG 766 (925)
Q Consensus 712 lVG~RVkV~WP~D~----~wY~G~V~syd~~tkkH~V~YDDGD---~E~L~L~~Ek~e~l~~ 766 (925)
.+|..|.|||..+. .||.|+|+.... ..|.|.|++=+ .|++. -++++.+..
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~~~~EiV~--~~rlR~~n~ 119 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDATYNEIVT--LERLRPVNP 119 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----CEEEC--GGGEEECCC
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCCCcceEEe--hhheEeCCC
Confidence 48999999999877 799999999984 68999998634 35554 455655543
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=76.40 E-value=79 Score=37.35 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=33.8
Q ss_pred CcCceeehhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhh
Q 002421 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (925)
Q Consensus 74 DkdVRayVAcCLADILRIyAPD-APYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLA 136 (925)
|.+|.-.++-||..+++.|-.+ .|| |-.++.+++..|.. .. +..+++++..+.
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~----l~~~~~~l~~~~~~---~~---~~~~l~l~~~~i 759 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPM----LQDLCLFIVASFQT---RC---CAPTLEISKTAI 759 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTH----HHHHHHHHHHHCC-----C---CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhcccc----HHHHHHHHHHHHhc---CC---chHHHHHHHHHH
Confidence 5567667777788888887666 566 77788888877764 11 133555555553
No 43
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=74.35 E-value=10 Score=34.76 Aligned_cols=54 Identities=9% Similarity=0.090 Sum_probs=38.3
Q ss_pred ccCccccCCCCccccccccCeEEEeeCCCCceEEEEEEEecCCC--CeEEEEccCCcc
Q 002421 696 TAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIK--KKHRILYADGDE 751 (925)
Q Consensus 696 ~~G~e~~s~~~~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~t--kkH~V~YDDGD~ 751 (925)
..|+....+......=.||.+|-|++ +..||.++|....... .+..|.|.+=..
T Consensus 11 ~~~~~~~~~~~~~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~Nk 66 (94)
T 2rnz_A 11 SSGLVPRGSHMSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 66 (94)
T ss_dssp CCCSSCSSCSSCGGGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCS
T ss_pred ccCCccCCCccccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 44554444444444456999999997 8899999999977644 368888886544
No 44
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=73.26 E-value=20 Score=40.92 Aligned_cols=157 Identities=9% Similarity=0.079 Sum_probs=84.4
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
+|.+.+..||..++.||..|..-+.|+. -...+..|+..++..| .|+........+..|.+++..-.- .+.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~----~~~ 444 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQ--LKPLVIQAMPTLIELM---KDPSVVVRDTAAWTVGRICELLPE----AAI 444 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHH--HHHHHHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHCGG----GTS
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhCch----hcc
Confidence 4567888899888889988875443320 0134555666555554 555433344566777777665211 111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC---------------CC-c--HHHHHHHHHHhhccCC---
Q 002421 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE---------------DV-S--WDLLRILLASVRKENQ--- 207 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE---------------~V-P--~eVLDvIL~~fl~~~k--- 207 (925)
....+..++..++..+.+. ..|.......|..++..+. .+ | ..++..|+..+.....
T Consensus 445 ~~~~l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~ 522 (876)
T 1qgr_A 445 NDVYLAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQN 522 (876)
T ss_dssp STTTHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCST
T ss_pred cHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchh
Confidence 2345666777777766652 6666665556666665432 12 2 3556666655543321
Q ss_pred CCCchHHHHHHHHHHhhhHhHHHHHHHHH
Q 002421 208 DVSPTSWKLGEKVFTKCAAKLKTNLKEAV 236 (925)
Q Consensus 208 s~~PaAykLA~~VI~~CadKLqp~I~q~l 236 (925)
.....++.....++..+...+.+++..++
T Consensus 523 ~~r~~~~~~l~~l~~~~~~~~~~~~~~l~ 551 (876)
T 1qgr_A 523 NLRSSAYESLMEIVKNSAKDCYPAVQKTT 551 (876)
T ss_dssp THHHHHHHHHHHHHHTCCSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCchhhHHHHHHHH
Confidence 11123455455556555544444444433
No 45
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=71.76 E-value=4.4 Score=41.07 Aligned_cols=76 Identities=21% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhccCCCchhhHHhhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCCC-----CCC----hhH
Q 002421 32 INLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDS-----PYD----DEL 102 (925)
Q Consensus 32 LKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPDA-----PYt----Ddq 102 (925)
...|.-|..+|......... ....+..++..| ..+|.|.|.+||-.+.-||++|+|++-+.. +|- ..+
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~-~k~~l~~i~~~l--~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~ 233 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVN-VQTFLPELLKHV--PQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQ 233 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCC-HHHHHHHHGGGH--HHHHTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHH
T ss_pred HHHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHH
Confidence 34444555555554333222 111233344433 357999999999999999999999987653 342 246
Q ss_pred HHHHHHHH
Q 002421 103 MKEFFQLA 110 (925)
Q Consensus 103 LKDIFqLf 110 (925)
+++|+..|
T Consensus 234 ~k~le~~f 241 (278)
T 4ffb_C 234 VKDLHKLF 241 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 46
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=71.39 E-value=3.4 Score=39.68 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=36.0
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecC----CCCeEEEEccCCcceeeecCcceEEEeeCCCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDP----IKKKHRILYADGDEEILNLKKERWELIKGGSS 769 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~----~tkkH~V~YDDGD~E~L~L~~Ek~e~l~~~~~ 769 (925)
.||.+|.|||+ |..||.+.|..... ...+..|.|.+=... -=+||..+..
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR-------~DEWV~~~ri 67 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRR-------LDEWVDKNRL 67 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSS-------CCEEECTTTS
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCC-------ceeecChhhc
Confidence 48999999998 78999999998663 234688888853321 1257766555
No 47
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=70.61 E-value=5.3 Score=40.47 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=63.9
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHH-hc-ccCCCCCcchhHHHHHHHHhhhhceeeeecc
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA-FE-NLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~q-f~-~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlD 146 (925)
+|.-.|.-|...+.-||..++..+.+...... ...-+...|+.. +. .|.+.....-...+..|-.+...-
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~------- 134 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKNA-HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD------- 134 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCHH-HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------
Confidence 44455555555566678888887776643321 222222233332 22 366654333333333333332211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc--CCCc-HHHHHHHHHHhhccCCCCCchHHHHHHHHH
Q 002421 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES--EDVS-WDLLRILLASVRKENQDVSPTSWKLGEKVF 221 (925)
Q Consensus 147 Le~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeES--E~VP-~eVLDvIL~~fl~~~ks~~PaAykLA~~VI 221 (925)
...+. ++..++....... .+|.......|..+|.+. ..++ ...+..|+..+..--....+.-+.-|..++
T Consensus 135 ~~~~~----~~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 135 TSITQ----SVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp SSSHH----HHHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 01122 2333444444444 456666677788888884 3454 345565554443322233444444444443
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=69.75 E-value=16 Score=39.26 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred hcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccC
Q 002421 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (925)
Q Consensus 68 ~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDL 147 (925)
.++.+.|..||..++.+|..|.+.+.++ ..+.+++.+|+..+ .|.+...-...+..|..|+.. +
T Consensus 171 ~l~~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~---~d~~~~vr~~a~~~l~~l~~~--------~ 234 (588)
T 1b3u_A 171 NLCSDDTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLA---SDEQDSVRLLAVEACVNIAQL--------L 234 (588)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHHTSCHH-----HHHHTHHHHHHHHH---TCSCHHHHTTHHHHHHHHHHH--------S
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcHH-----hHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHh--------C
Confidence 3567889999999999999999875432 22344555554433 333221111223344444332 2
Q ss_pred CchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC--CCcHHHHHHHHHHhh
Q 002421 148 ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE--DVSWDLLRILLASVR 203 (925)
Q Consensus 148 e~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE--~VP~eVLDvIL~~fl 203 (925)
+.+.+...++..+..... +....|+......|..++.-.. .+...++..++.-+.
T Consensus 235 ~~~~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 235 PQEDLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291 (588)
T ss_dssp CHHHHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhC
Confidence 333333344444444443 3345677777777766665321 233445555555543
No 49
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=68.33 E-value=3.6 Score=48.96 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=26.8
Q ss_pred hhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcC
Q 002421 56 ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (925)
Q Consensus 56 SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyA 93 (925)
-+.+++..|++ .|.+.+.-||.++|.||..++.+..
T Consensus 493 ~l~~~l~~l~~--~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 493 QLIELMPILAT--FLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHHHH--HTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHhccc
Confidence 45666666665 3556778899999999999998643
No 50
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=67.45 E-value=7.4 Score=46.87 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=28.9
Q ss_pred HhhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCC
Q 002421 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAP 94 (925)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAP 94 (925)
.-|.+++..|+. .|.|.+..|+.++|.+|.-|.+-+..
T Consensus 536 ~~l~~vl~~ll~--~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 536 NFLRTVILKLFE--FMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 346667777776 47888999999999999888876543
No 51
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=66.59 E-value=85 Score=36.85 Aligned_cols=96 Identities=11% Similarity=0.226 Sum_probs=47.9
Q ss_pred CcCceeehhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeecc--CC--
Q 002421 74 DMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD--LE-- 148 (925)
Q Consensus 74 DkdVRayVAcCLADILRIyAPD-APYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlD--Le-- 148 (925)
+..|.=.++-||..+++.+-++ .|| |-.++.+++..+.+- + ....++++..|... + -.+ ..
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~----l~~~~~~l~~~~~~~-----~-~~~~l~l~~~li~~--f--~~~~~~~~~ 763 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPM----VPQLCEMLGRMYSTI-----P-QASALDLTRQLVHI--F--AHEPAHFPP 763 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGG----HHHHHHHHHHHHHHS-----C-CHHHHHHHHHHHHH--H--TTCTTTCHH
T ss_pred chHHHHHHHHHHHHHHHhhccccccc----HHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHH--h--CCCcchHHH
Confidence 4455555666677776665554 455 666666666666541 1 22455666555331 1 011 11
Q ss_pred chHHHHHHHHHHHHHhhcC---CchhHHHHHHHHHHHHh
Q 002421 149 CDKLVVEMFQHFLKVIRSN---HPHFVFAAMETIMTLVI 184 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~d---hp~kV~~~M~dILs~VI 184 (925)
...++..+|+.+|.++..+ +| .|....-.+|..++
T Consensus 764 ~~~~l~~~~~~~l~~~~~~~~~~p-d~~~~~f~ll~~~~ 801 (963)
T 2x19_B 764 IEALFLLVTSVTLTLFQQGPRDHP-DIVDSFMQLLAQAL 801 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCc-hHHHHHHHHHHHHH
Confidence 2345556666666666533 33 34333334444444
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=65.86 E-value=25 Score=34.49 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=89.2
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
.|..+|-.+|.-++-+|..++.-+ |. +....+.+|+..+...|. .|.+..-....+..|..|+.. +--+
T Consensus 23 ~l~s~~w~~R~~a~~~L~~l~~~~-~~--~~~~~~~~i~~~L~~~l~--kd~~~~V~~~a~~~l~~la~~----l~~~-- 91 (242)
T 2qk2_A 23 KLEEKKWTLRKESLEVLEKLLTDH-PK--LENGEYGALVSALKKVIT--KDSNVVLVAMAGKCLALLAKG----LAKR-- 91 (242)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHC-SS--BCCCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HGGG--
T ss_pred hhccCCHHHHHHHHHHHHHHHccC-CC--CCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHH----Hhhh--
Confidence 457889999999999999998863 33 223345677777766652 145444556677777777742 1111
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhh
Q 002421 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKC 224 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~C 224 (925)
-...+..++..++....+. ...|+......|..++.... ...++..|+..+.. .+|..+.-+-..|..+
T Consensus 92 ~~~~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~----~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 92 FSNYASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS--LEAQQESIVESLSN----KNPSVKSETALFIARA 160 (242)
T ss_dssp GHHHHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC----CChHHHHHHHHHHHHH
Confidence 2467778888888877754 45688888888888877643 24567777666542 2455555555555554
No 53
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.94 E-value=6.4 Score=35.59 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.4
Q ss_pred ccccccCeEEEeeC---CCCceEEEEEEEecCCC--CeEEEEccCCcceeeecCcceE-EEeeCCCc
Q 002421 709 NEQLVGSRIKVWWP---MDETFYKGVVDNYDPIK--KKHRILYADGDEEILNLKKERW-ELIKGGSS 769 (925)
Q Consensus 709 ge~lVG~RVkV~WP---~D~~wY~G~V~syd~~t--kkH~V~YDDGD~E~L~L~~Ek~-e~l~~~~~ 769 (925)
..-.||.+|.|+++ .+..||.++|....... .+..|.|.+=+. || +||..+..
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~Nk--------RlDEWV~~~rl 66 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNR--------RLDEWVTHERL 66 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCS--------CCCEEECTTTB
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCc--------ccccccCHhHc
Confidence 34459999999997 58899999999988754 368888875443 33 56666555
No 54
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=64.85 E-value=40 Score=40.19 Aligned_cols=57 Identities=9% Similarity=0.199 Sum_probs=37.3
Q ss_pred ceeehhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhh
Q 002421 77 VRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKV 138 (925)
Q Consensus 77 VRayVAcCLADILRIyAPD-APYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeV 138 (925)
..-++..||..|+..+..+ .||-+.-|.-++.++-..+ .+++++.|. .+++|+|+.+
T Consensus 569 ~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~---~~~~~~~~~--~~~~e~l~~l 626 (960)
T 1wa5_C 569 ENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMA---KNPSNPRFT--HYTFESIGAI 626 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHT---TSCCCHHHH--HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---hCCCCcHHH--HHHHHHHHHH
Confidence 4458889999998887766 7886655544444443332 456666664 5677877665
No 55
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=64.58 E-value=65 Score=34.96 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=53.1
Q ss_pred cccCCC-cCceeehhhHHhhhhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceee
Q 002421 69 LLRRSD-MDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCL 142 (925)
Q Consensus 69 LLkHKD-kdVRayVAcCLADILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~V 142 (925)
||.+.| ..||..++.||..|..- +.+.... +...++. .|.+++...-.+....|-+|+....
T Consensus 125 lL~~~~~~~v~~~A~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~---lL~~~~~~v~~~a~~aL~~l~~~~~-- 192 (528)
T 4b8j_A 125 FLTREDFPQLQFEAAWALTNIASG-------TSENTKVVIDHGAVPIFVK---LLGSSSDDVREQAVWALGNVAGDSP-- 192 (528)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHTCH--
T ss_pred HhCCCCCHHHHHHHHHHHHHHhCC-------CHHHHHHHHhCCcHHHHHH---HhcCCCHHHHHHHHHHHHHHhCCCh--
Confidence 677776 89999999999998842 2232222 2333333 3344333334455666777653210
Q ss_pred eeccCCchHHHHH--HHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 002421 143 LMLDLECDKLVVE--MFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (925)
Q Consensus 143 LMlDLe~ddLI~e--LFktFFdiVr~dhp~kV~~~M~dILs~VIeES 187 (925)
++-+.+.+ .+..++..+..+....|......+|..+....
T Consensus 193 -----~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 193 -----KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp -----HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred -----hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 01122222 34445555543444555555555666555543
No 56
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=64.35 E-value=7.1 Score=44.77 Aligned_cols=45 Identities=20% Similarity=0.368 Sum_probs=37.3
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcc-CCcceeeecCc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYA-DGDEEILNLKK 758 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YD-DGD~E~L~L~~ 758 (925)
-+|.-|-+.|. |+.||.+.|..++. .+...|.|- =|..+.+.+..
T Consensus 413 ~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~ 458 (570)
T 3bdl_A 413 RRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTR 458 (570)
T ss_dssp CTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGG
T ss_pred CcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHH
Confidence 38999999999 99999999999997 466777775 59999876553
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=63.66 E-value=41 Score=34.88 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=62.3
Q ss_pred ccCCCcCceeehhhHHhhhhhhc------C--------C--CCCCC--hhHHHHHHHHHHHHhcccCC-CCCcchhH---
Q 002421 70 LRRSDMDVRLSVTSCISEITRIT------A--------P--DSPYD--DELMKEFFQLAVSAFENLSH-ASGRYYMK--- 127 (925)
Q Consensus 70 LkHKDkdVRayVAcCLADILRIy------A--------P--DAPYt--DdqLKDIFqLfV~qf~~LaD-~ssp~F~q--- 127 (925)
+.+.+.+||..+.-++..+.+.- . | ...+. ...+..|+..++..|....+ .++..|.-
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~ 347 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 347 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHH
Confidence 45777888877776666665542 0 0 11111 12345666666666654321 11222222
Q ss_pred HHHHHHHhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccC-----CCcHHHHHHHHHHh
Q 002421 128 ALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESE-----DVSWDLLRILLASV 202 (925)
Q Consensus 128 ~~yLLEsLAeVKS~VLMlDLe~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE-----~VP~eVLDvIL~~f 202 (925)
...+|..|+.+- + +.++..++..+.....+. ...+.......|..+.+.+. ..-..++..|+..|
T Consensus 348 a~~~L~~l~~~~--------~-~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 348 AGVCLMLLATCC--------E-DDIVPHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp HHHHHHHHHHHT--------T-TTHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred HHHHHHHHHHhc--------c-HHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 344555554442 2 345555555555554433 34555555666666665432 11145677676666
Q ss_pred hc
Q 002421 203 RK 204 (925)
Q Consensus 203 l~ 204 (925)
..
T Consensus 418 ~d 419 (462)
T 1ibr_B 418 KD 419 (462)
T ss_dssp GC
T ss_pred cC
Confidence 43
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=63.48 E-value=70 Score=36.47 Aligned_cols=124 Identities=10% Similarity=0.129 Sum_probs=61.2
Q ss_pred hhHHHHHhhhhh-hcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcc-cCCCCCcchhHHHHHHH
Q 002421 56 ALLPTMKGLITN-DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFEN-LSHASGRYYMKALSILD 133 (925)
Q Consensus 56 SL~pl~k~LVs~-~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~-LaD~ssp~F~q~~yLLE 133 (925)
.+..+...|+.+ ..++|.+..|..-++-||..| .++ ..+.. ..+..|.. |.+. ++ .-++..|.
T Consensus 271 ~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l----~~~-----~~l~~---~a~~~L~~~L~~~-d~--~vr~~aL~ 335 (618)
T 1w63_A 271 AMNDILAQVATNTETSKNVGNAILYETVLTIMDI----KSE-----SGLRV---LAINILGRFLLNN-DK--NIRYVALT 335 (618)
T ss_dssp TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS----CCC-----HHHHH---HHHHHHHHHHTCS-ST--TTHHHHHH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhc----CCC-----HHHHH---HHHHHHHHHHhCC-CC--chHHHHHH
Confidence 334444444432 245677777777777777764 121 22221 22222222 3322 22 22334455
Q ss_pred HhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 002421 134 TVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (925)
Q Consensus 134 sLAeVKS~VLMlDLe~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~ 204 (925)
+|..+-.. ...++...+..||.... +-+..|...-.++|..+..+.. + ..++..|+.++..
T Consensus 336 ~L~~i~~~-------~p~~~~~~~~~i~~~l~-d~d~~Ir~~alelL~~l~~~~n-v-~~iv~eL~~~l~~ 396 (618)
T 1w63_A 336 SLLKTVQT-------DHNAVQRHRSTIVDCLK-DLDVSIKRRAMELSFALVNGNN-I-RGMMKELLYFLDS 396 (618)
T ss_dssp HHHHHHHH-------HHHHHGGGHHHHHHGGG-SSCHHHHHHHHHHHHHHCCSSS-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhh-------CHHHHHHHHHHHHHHcc-CCChhHHHHHHHHHHHHccccc-H-HHHHHHHHHHHHh
Confidence 55554211 12344445556666554 3345566666777777777643 2 4566666666654
No 59
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=63.00 E-value=47 Score=37.88 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=35.1
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhh
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAe 137 (925)
||.+.|..||..+-.+|..|.+.. |+ -+...+..| |..|.|.+..--.+.+.+|-.|+.
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~-p~------~~~~~~~~i---~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTD-HN------AVQRHRSTI---VDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHH-HH------HHGGGHHHH---HHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCchHHHHHHHHHHHHhhC-HH------HHHHHHHHH---HHHccCCChhHHHHHHHHHHHHcc
Confidence 688999999999999999999762 21 122222223 334455443333445556655544
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=61.40 E-value=22 Score=38.23 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=16.2
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPD 95 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPD 95 (925)
++.+.+..||..++.||..|.+.+-++
T Consensus 410 ~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 410 LAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 455566666666666666666655443
No 61
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=61.16 E-value=49 Score=39.11 Aligned_cols=84 Identities=8% Similarity=0.088 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhhhH
Q 002421 151 KLVVEMFQHFLKVIRS-NHPHFVFAAMETIMTL---VIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA 226 (925)
Q Consensus 151 dLI~eLFktFFdiVr~-dhp~kV~~~M~dILs~---VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~Cad 226 (925)
..+..||..|..+... .|| .|......++.. .+.+....=..+|..||..| . ......|...-.++|..|..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~-~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~ 576 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNV-KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL 576 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCH-HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhcCccccCH-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH
Confidence 5677788855444322 244 454444444433 33332233445667777666 2 45556666666689999999
Q ss_pred hHHHHHHHHHHh
Q 002421 227 KLKTNLKEAVQS 238 (925)
Q Consensus 227 KLqp~I~q~l~s 238 (925)
.|.||+.++++.
T Consensus 577 ~l~p~~~~ll~~ 588 (971)
T 2x1g_F 577 QLKPYADPLLNA 588 (971)
T ss_dssp HHHHHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999998877664
No 62
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=60.95 E-value=5.9 Score=34.77 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.6
Q ss_pred ccccCeEEEeeCC--CCceEEEEEEEecCCCC--eEEEEccC
Q 002421 711 QLVGSRIKVWWPM--DETFYKGVVDNYDPIKK--KHRILYAD 748 (925)
Q Consensus 711 ~lVG~RVkV~WP~--D~~wY~G~V~syd~~tk--kH~V~YDD 748 (925)
-.+|.+|.|+|++ +..||.+.|...+...+ +..|.|..
T Consensus 6 ~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~g 47 (76)
T 2lcc_A 6 CLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYG 47 (76)
T ss_dssp SSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETT
T ss_pred cCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCC
Confidence 3589999999994 36999999999886544 47888874
No 63
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=60.79 E-value=9.6 Score=35.41 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=30.9
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCC--eEEEEccC
Q 002421 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK--KHRILYAD 748 (925)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk--kH~V~YDD 748 (925)
...=.+|.+|-+|| +..||.+.|.......+ +..|.|.+
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~G 60 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSG 60 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 34455999999999 68999999999775433 68888884
No 64
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=57.79 E-value=19 Score=32.73 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=30.7
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCC--CeEEEEccCCcc
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIK--KKHRILYADGDE 751 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~t--kkH~V~YDDGD~ 751 (925)
.||.+|.|++ +..||.+.|....... ....|.|.+=..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~Nk 64 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNK 64 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCT
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCc
Confidence 4899999998 8899999999987644 368888875443
No 65
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=57.14 E-value=81 Score=36.54 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhccCCCchhhHHhhHHHHHhhhh-hhcccCCCcCceeehhhHH
Q 002421 7 EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT-NDLLRRSDMDVRLSVTSCI 85 (925)
Q Consensus 7 ~~ele~~L~~~G~KLis~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs-~~LLkHKDkdVRayVAcCL 85 (925)
.+|.|+-+.+.-++++ ...+.+|..-.+ .+-..|.-++. ... +..|..+....+. ..-+...|.+.=--...|+
T Consensus 171 ~~E~E~~i~~~ikK~L-~DVT~~EF~L~m-~lL~~lkl~~t-~~g--~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~ 245 (507)
T 3u0r_A 171 TKEVEELILTESKKVL-EDVTGEEFVLFM-KILSGLKSLQT-VSG--RQQLVELVAEQADLEQTFNPSDPDCVDRLLQCT 245 (507)
T ss_dssp CHHHHHHHHHHHHHHT-TSCCHHHHHHHH-HHHHTSGGGSS-HHH--HHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-ccccHHHHHHHH-HHHHhcccccC-chH--HHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHH
Confidence 4788888888888888 667777753333 33344444332 221 3344444433321 1234545655545566777
Q ss_pred hhhhhhcCCCCCCChhHHHHHHHHHHHH-hcccCCCCCc--chhHHHHHHHHhhhhceeeeeccCC-chHHHHHHHHHHH
Q 002421 86 SEITRITAPDSPYDDELMKEFFQLAVSA-FENLSHASGR--YYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFL 161 (925)
Q Consensus 86 ADILRIyAPDAPYtDdqLKDIFqLfV~q-f~~LaD~ssp--~F~q~~yLLEsLAeVKS~VLMlDLe-~ddLI~eLFktFF 161 (925)
-..|=+|++.+. -..+|.+|..+ |+.|.+...+ --...+.||..||++-++. .+++ +.+++..+|++|+
T Consensus 246 ~~ALP~FS~~v~-----StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~--~~~e~a~~~l~~iy~~L~ 318 (507)
T 3u0r_A 246 RQAVPLFSKNVH-----STRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFC--GDMEKLETNLRKLFDKLL 318 (507)
T ss_dssp HHHGGGCBTTBC-----CHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTC--CCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-----hHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCC--CccchHHHHHHHHHHHHH
Confidence 788888887776 45588888888 8888775443 2236789999999997663 3465 7789999999999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhh
Q 002421 162 KVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVR 203 (925)
Q Consensus 162 diVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl 203 (925)
..+- -.|..+. .=.++. ++-..+....+.+||..|-
T Consensus 319 ~ymP-~~p~~~~-~~~~~~----~~~p~l~fS~vECLLy~fH 354 (507)
T 3u0r_A 319 EYMP-LPPEEAE-NGENAG----NEEPKLQFSYVECLLYSFH 354 (507)
T ss_dssp TTSC-CCC-------------------CCCHHHHHHHHHHHH
T ss_pred HHCC-CCccccc-cccccc----ccCcccchhHHHHHHHHHH
Confidence 8655 2232221 001111 3445688888888887653
No 66
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=56.52 E-value=1.2e+02 Score=35.48 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=77.6
Q ss_pred hHHhhhhhhcCCCCCCCh---hHHHHHHHHHHHHhcccCCC-CCc-chhHHHHHHHHhhhhceeeeeccCCchHHHHHHH
Q 002421 83 SCISEITRITAPDSPYDD---ELMKEFFQLAVSAFENLSHA-SGR-YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMF 157 (925)
Q Consensus 83 cCLADILRIyAPDAPYtD---dqLKDIFqLfV~qf~~LaD~-ssp-~F~q~~yLLEsLAeVKS~VLMlDLe~ddLI~eLF 157 (925)
.++..|++.|+-+..|.+ .-|..+|..++..|. .+. +.| .-..+|.+|..+...-.-.++ .....+..+|
T Consensus 745 ~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~pd~~~~~f~ll~~~~~~~~~~~~---~~~~~~~~i~ 819 (963)
T 2x19_B 745 DLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ--QGPRDHPDIVDSFMQLLAQALKRKPDLFL---CERLDVKAVF 819 (963)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH--HCTTTCHHHHHHHHHHHHHHHHHCGGGGG---CTTSCHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh--hCcccCchHHHHHHHHHHHHHHhCcHHHc---CCcccHHHHH
Confidence 346777777776654442 233334444444443 122 234 345678899988865433332 2222267777
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhcccC----------CCcHHHHHHHHHHhhccCC-CCCchHHHHHHHHHHhhhH
Q 002421 158 QHFLKVIRSNHPHFVFAAMETIMTLVIDESE----------DVSWDLLRILLASVRKENQ-DVSPTSWKLGEKVFTKCAA 226 (925)
Q Consensus 158 ktFFdiVr~dhp~kV~~~M~dILs~VIeESE----------~VP~eVLDvIL~~fl~~~k-s~~PaAykLA~~VI~~Cad 226 (925)
..+...++.. ...+......+|..+|.... ..-..++..||..+..... ........+...++..+..
T Consensus 820 ~~~~~~l~~~-~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~ 898 (963)
T 2x19_B 820 QCAVLALKFP-EAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFS 898 (963)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChH
Confidence 7777776643 34455556667777776532 2334566666666653222 2222222222344555565
Q ss_pred hHHHHHHHHH
Q 002421 227 KLKTNLKEAV 236 (925)
Q Consensus 227 KLqp~I~q~l 236 (925)
.+..++.++|
T Consensus 899 ~~~~~l~~~l 908 (963)
T 2x19_B 899 LLSMWIKEAL 908 (963)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 67
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=55.91 E-value=13 Score=35.60 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=33.2
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcc
Q 002421 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDE 751 (925)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~ 751 (925)
|.-..|..|.|-|+ |..-|.|...+.... ...+|.++||..
T Consensus 63 GpP~~G~~V~V~W~-DG~~y~a~f~g~~~~-~~YtV~FeDgs~ 103 (123)
T 2xdp_A 63 GPPAEGEVVQVKWP-DGKLYGAKYFGSNIA-HMYQVEFEDGSQ 103 (123)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEEEE-EEEEEECTTSCE
T ss_pred CCCCCCCEEEEEcC-CCCEEeEEEeeeeeE-EEEEEEECCCCe
Confidence 55668999999999 567899999888753 557899999974
No 68
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=55.04 E-value=9.1 Score=36.46 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.3
Q ss_pred ccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcce
Q 002421 711 QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEE 752 (925)
Q Consensus 711 ~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E 752 (925)
--||.+|..-|+ +..||.|+|++-... --+.|.++||-.-
T Consensus 6 v~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~s 45 (118)
T 2qqr_A 6 ITAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFS 45 (118)
T ss_dssp CCTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCEE
T ss_pred eccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCcc
Confidence 358999999999 889999999997553 4588999999754
No 69
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=54.93 E-value=18 Score=34.44 Aligned_cols=51 Identities=20% Similarity=0.368 Sum_probs=37.9
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeecCcceEEE
Q 002421 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWEL 763 (925)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~~Ek~e~ 763 (925)
|.-..|..|+|-|+ |..-|.|...++.. ....+|.++||-. |.+..+.+--
T Consensus 62 GpP~~G~~V~V~W~-DG~~y~a~f~g~~~-~~~Y~V~feDgs~--~~~kR~~iyt 112 (118)
T 2qqr_A 62 GPPAEGEVVQVRWT-DGQVYGAKFVASHP-IQMYQVEFEDGSQ--LVVKRDDVYT 112 (118)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEEE-EEEEEEEETTSCE--EEECGGGEEE
T ss_pred CCCCCCCEEEEEcC-CCCEeeeEEeceeE-EEEEEEEECCCCE--EEEcHHHeec
Confidence 56678999999999 55789998888765 3457888899985 5555555543
No 70
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=54.22 E-value=2.1e+02 Score=31.03 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.4
Q ss_pred cccCCCcCceeehhhHHhhhhh
Q 002421 69 LLRRSDMDVRLSVTSCISEITR 90 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILR 90 (925)
||.|.|..|+..++.||..|..
T Consensus 252 lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 252 LIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHCCCCHHHHHHHHHHHHHHHc
Confidence 6789999999999999998874
No 71
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=51.63 E-value=93 Score=37.01 Aligned_cols=150 Identities=7% Similarity=0.072 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhccCCCchhhHHhhHHHHHhhhhh-hcccCCCcCceeehhh--HHhhhhhhcCCCCCCCh
Q 002421 24 PPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITN-DLLRRSDMDVRLSVTS--CISEITRITAPDSPYDD 100 (925)
Q Consensus 24 ~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~-~LLkHKDkdVRayVAc--CLADILRIyAPDAPYtD 100 (925)
.+++..+|...|+.|..+.+.||.. +...+..+|++- ..+...+.-|++|+.- .|+=. ..
T Consensus 108 d~~~~~~L~~~L~aLs~~Vs~Ld~~-------~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa----------~~ 170 (649)
T 3tj1_A 108 ERINDKNLNILLDILSSNINRIESS-------RGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSS----------IP 170 (649)
T ss_dssp TSCCHHHHHHHHHHHHHTGGGGCSG-------GGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHH----------CG
T ss_pred CcCCHHHHHHHHHHHHhhhhhcCch-------hHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhc----------cH
Confidence 3578999999999999999998752 235678888888 8888888778877742 22210 13
Q ss_pred hHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC-chHHHHHHHHHHHHHhhcCCchhHHHHHHHH
Q 002421 101 ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLVVEMFQHFLKVIRSNHPHFVFAAMETI 179 (925)
Q Consensus 101 dqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe-~ddLI~eLFktFFdiVr~dhp~kV~~~M~dI 179 (925)
.-|..|+..+|..|..- .....+.+.+|..|..+ +| +-..|..++...|=-. ......+..++.++
T Consensus 171 ~yl~~vl~mLV~~F~~~----~~~~~~~H~~L~~Il~l--------vP~s~~~L~~iL~~~FP~~-~~s~~~~~~Yv~NL 237 (649)
T 3tj1_A 171 KWWQDVSMILVSCFILP----IKQTVCHHDMLKYFLRM--------IPSSMGFIDTYLAKFFPNK-NDTRRKLVNYTSNL 237 (649)
T ss_dssp GGHHHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHTCCCT-TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC----CcccHHHHHHHHHHHHH--------cCCCHHHHHHHHHHhCCCC-CCchhHHHHHHHHH
Confidence 57888999999988631 11234566666666543 12 2233333333333211 11223345666666
Q ss_pred HHHHhcccCCCcHHHHHHHHHHhhc
Q 002421 180 MTLVIDESEDVSWDLLRILLASVRK 204 (925)
Q Consensus 180 Ls~VIeESE~VP~eVLDvIL~~fl~ 204 (925)
|. |++=+..+-.++|.+|+..++.
T Consensus 238 Lr-l~~Y~PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 238 LK-LRGYCSELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HH-HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HH-HHhhchHHHHHHHHHHHHHHHH
Confidence 65 4456677888888888888763
No 72
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=50.66 E-value=16 Score=41.22 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=22.1
Q ss_pred HHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcC
Q 002421 59 PTMKGLITNDLLRRSDMDVRLSVTSCISEITRITA 93 (925)
Q Consensus 59 pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyA 93 (925)
.++..|. .++.+.|.++|.-++-+|..+..-|+
T Consensus 353 ~iv~~L~--~~l~~~d~~~r~~~v~aI~~la~~~~ 385 (591)
T 2vgl_B 353 QVLAELK--EYATEVDVDFVRKAVRAIGRCAIKVE 385 (591)
T ss_dssp HHHHHHH--HHTTSSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHhCh
Confidence 3444444 46677788888888777777776654
No 73
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=50.28 E-value=96 Score=31.08 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCCCh---hHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchh
Q 002421 95 DSPYDD---ELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHF 171 (925)
Q Consensus 95 DAPYtD---dqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe~ddLI~eLFktFFdiVr~dhp~k 171 (925)
-.|++| +.|+++|.-.|.+++-= ...++.+|.||+=+.|...-+ -|++ --.++|+.+.++ ...| .+
T Consensus 27 g~p~~d~~l~rlrd~YerAia~~Pp~---k~~~wrrYI~LWIrYA~~~ei---~D~d---~aR~vy~~a~~~-hKkF-AK 95 (161)
T 4h7y_A 27 SVPLSDALLNKLIGRYSQAIEALPPD---KYGQNESFARIQVRFAELKAI---QEPD---DARDYFQMARAN-CKKF-AF 95 (161)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHSCGG---GGTTCHHHHHHHHHHHHHHHH---HCGG---GCHHHHHHHHHH-CTTB-HH
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCcc---ccccHHHHHHHHHHHHHHHHh---cCHH---HHHHHHHHHHHH-hHHH-HH
Confidence 457777 56777888777766532 377899999999999988433 5665 235667766654 3333 22
Q ss_pred HH-------------HHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCC
Q 002421 172 VF-------------AAMETIMTLVIDESEDVSWDLLRILLASVRKENQ 207 (925)
Q Consensus 172 V~-------------~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~k 207 (925)
|. ..-..||..-|.- -..|.++|...|.++..+.+
T Consensus 96 iwi~~AqFEiRqgnl~kARkILg~AiG~-~~k~~~~le~a~~nl~~~~~ 143 (161)
T 4h7y_A 96 VHISFAQFELSQGNVKKSKQLLQKAVER-GAVPLEMLEIALRNLNLQKK 143 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCcHHHHHHHHHhhhcCCC
Confidence 21 2223566666663 36677777777777665443
No 74
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=50.00 E-value=1.4e+02 Score=35.99 Aligned_cols=116 Identities=6% Similarity=0.198 Sum_probs=70.3
Q ss_pred eeehh-hHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC-c------
Q 002421 78 RLSVT-SCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE-C------ 149 (925)
Q Consensus 78 RayVA-cCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe-~------ 149 (925)
|+.+| .||+-|.|..+-..+|.. .|..|+.++ ++|+. ++++ .+-.+.|.-++.|=++|.+.|+. .
T Consensus 399 rl~~aL~~l~~~~r~lv~~~~yr~-hl~~lL~l~---LpgID-~ND~--~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~ 471 (799)
T 1vsy_4 399 RIISSLKQFTRVIRFIVMDKLYRV-HITNVLSML---VSKLD-MNDT--NLTSNLINGIVSIAAFIPIQDLTGEDDYISF 471 (799)
T ss_dssp HHHHHHHHHHTTHHHHTTSTTGGG-HHHHHHHHH---HHTCC-SSCH--HHHHHHHHHHHHHHHTSCBCCCCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHH---hccCC-cccH--HHHHHHHHHHHHHHHhccccccCCcchhhhh
Confidence 44443 478889999888888854 444444443 44442 3333 35566666666666666666554 1
Q ss_pred ------------------------------------------hHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc
Q 002421 150 ------------------------------------------DKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES 187 (925)
Q Consensus 150 ------------------------------------------ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeES 187 (925)
.+++.++|.-+|..+..+.-..|...+...+..++.
T Consensus 472 ~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~-- 549 (799)
T 1vsy_4 472 ESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQE-- 549 (799)
T ss_dssp HHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHH--
T ss_pred hhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH--
Confidence 167778888888887765555565554444444443
Q ss_pred CCCcHHHHHHHHHHhh
Q 002421 188 EDVSWDLLRILLASVR 203 (925)
Q Consensus 188 E~VP~eVLDvIL~~fl 203 (925)
.++.++.+.++..|.
T Consensus 550 -~lS~~if~~~l~k~~ 564 (799)
T 1vsy_4 550 -SMDDKIFNYFASLLN 564 (799)
T ss_dssp -TBCHHHHHHHHHHHH
T ss_pred -hCCHHHHHHHHHHHH
Confidence 566777766666644
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=48.69 E-value=27 Score=39.35 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=58.7
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
+|+|.|..|+.-++.||..+..-. +-+.+.++.++.-++..|-.|.+ .++ .-++..|.+|..+-... +
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~----~~~~~~~~~~~~~~~~~L~~L~~-~d~--~vr~~aL~~l~~i~~~~-----p 314 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELL----PKDSDYYNMLLKKLAPPLVTLLS-GEP--EVQYVALRNINLIVQKR-----P 314 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSC----CBTTBSHHHHHHHTHHHHHHHTT-SCH--HHHHHHHHHHHHHHHHC-----C
T ss_pred HHcCCChHHHHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHhc-CCc--cHHHHHHHHHHHHHHhC-----h
Confidence 689999999999999999886422 11223455555444444334443 222 34556677766652210 0
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 002421 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~f 202 (925)
+++......|| ...+.+..|...-.++|..+.++.. + ..++..|+..+
T Consensus 315 --~~~~~~~~~~~--~~~~d~~~Ir~~al~~L~~l~~~~n-v-~~iv~~L~~~l 362 (591)
T 2vgl_B 315 --EILKQEIKVFF--VKYNDPIYVKLEKLDIMIRLASQAN-I-AQVLAELKEYA 362 (591)
T ss_dssp --STTTTCTTTTS--CCTTSCHHHHHHHHHHHHHTCCSST-H-HHHHHHHHHHT
T ss_pred --HHHHHHHHhhe--eccCChHHHHHHHHHHHHHHCChhh-H-HHHHHHHHHHH
Confidence 11111112222 1123345566656666666655532 2 23455555443
No 76
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=48.24 E-value=63 Score=39.49 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=69.6
Q ss_pred HhhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCC-CCCChhHHHHHHHHHHHHhcc--c--CCC---------
Q 002421 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPD-SPYDDELMKEFFQLAVSAFEN--L--SHA--------- 120 (925)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPD-APYtDdqLKDIFqLfV~qf~~--L--aD~--------- 120 (925)
.-|.+++..|+...-|.|++..||..+|..|.-+.+-+.+. .||-+. |++.+-..|.. + .+.
T Consensus 531 ~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~----il~~l~~lL~~~~~~~~~~~~~~~~~~~ 606 (980)
T 3ibv_A 531 AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTES----SLAMLGDLLNISVSPVTDMDAPVPTLNS 606 (980)
T ss_dssp TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHH----HHHHTTGGGCCCCCCCCC--CSSCCHHH
T ss_pred hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHH----HHHHHHHhhcCcCCCCCcccccccchhh
Confidence 45778888899888889999999999999999999998887 576544 33333332221 1 111
Q ss_pred --CCcchhHHHHHHHHhhhhceeeeeccCC-----chHHHHHHHHHHHHHhh
Q 002421 121 --SGRYYMKALSILDTVAKVRSCLLMLDLE-----CDKLVVEMFQHFLKVIR 165 (925)
Q Consensus 121 --ssp~F~q~~yLLEsLAeVKS~VLMlDLe-----~ddLI~eLFktFFdiVr 165 (925)
++..|..++||.|.++.+=+.+-. ..+ .+.|+..+|+.+-..+.
T Consensus 607 ~~~~~~~~~ql~L~eaig~li~~~~~-~~e~~~~~l~~ll~pl~~~l~~~l~ 657 (980)
T 3ibv_A 607 SIRNSDFNSQLYLFETVGVLISSGNL-TPEEQALYCDSLINALIGKANAALS 657 (980)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccCCchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112588899999999987544221 111 34556666666655554
No 77
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=52.92 E-value=4 Score=38.91 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=39.4
Q ss_pred CccccccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcceeeec
Q 002421 706 PALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNL 756 (925)
Q Consensus 706 ~~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L 756 (925)
...|.-.||..|.+--| |..|-+|+|...-..+ .++|++||||+..|..
T Consensus 52 ~ikG~l~vG~~ve~~~~-~~~~~~~~I~~i~D~S-~YtVVFdDGD~ktLrR 100 (118)
T 2lcd_A 52 QVKGPLRVGAIVETRTS-DGSFQEAIISKLTDAS-WYTVVFDDGDERTLRR 100 (118)
Confidence 33666779999999998 5699999999876654 5779999999987643
No 78
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.77 E-value=1.4e+02 Score=28.07 Aligned_cols=127 Identities=11% Similarity=0.157 Sum_probs=66.6
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
+|.+.|..||..++.+|..+-. .+++..++..| .| +...-+...+..|+.+..
T Consensus 58 ~l~~~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l---~~---~~~~vr~~a~~aL~~~~~-------- 110 (211)
T 3ltm_A 58 ALKDEDAWVRRAAADALGQIGD-------------ERAVEPLIKAL---KD---EDGWVRQSAAVALGQIGD-------- 110 (211)
T ss_dssp HTTCSCHHHHHHHHHHHHHHCC-------------GGGHHHHHHHT---TC---SSHHHHHHHHHHHHHHCC--------
T ss_pred HHcCCCHHHHHHHHHHHHhhCC-------------HHHHHHHHHHH---cC---CCHHHHHHHHHHHHHhCc--------
Confidence 6678899999999999988731 12344444443 33 334456677777776642
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHH-hhhHh
Q 002421 149 CDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFT-KCAAK 227 (925)
Q Consensus 149 ~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~-~CadK 227 (925)
.+.+ ..+...+. +-...|.......|..+=. .+.+..|+..+.. ..+.-+.-|...+. -....
T Consensus 111 -~~~~----~~L~~~l~-d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~ 174 (211)
T 3ltm_A 111 -ERAV----EPLIKALK-DEDWFVRIAAAFALGEIGD------ERAVEPLIKALKD----EDGWVRQSAADALGEIGGER 174 (211)
T ss_dssp -GGGH----HHHHHHTT-CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCSHH
T ss_pred -HHHH----HHHHHHHh-CCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCchh
Confidence 1222 22223333 2334566666666665521 3455555554422 22333333333333 23345
Q ss_pred HHHHHHHHHHh
Q 002421 228 LKTNLKEAVQS 238 (925)
Q Consensus 228 Lqp~I~q~l~s 238 (925)
..+.|.++++.
T Consensus 175 ~~~~L~~~l~d 185 (211)
T 3ltm_A 175 VRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 56666676664
No 79
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=46.25 E-value=88 Score=34.09 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=34.9
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHH-HHHHH-hcccCCCCCcchhHHHHHHHHhhh
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ-LAVSA-FENLSHASGRYYMKALSILDTVAK 137 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFq-LfV~q-f~~LaD~ssp~F~q~~yLLEsLAe 137 (925)
||.|.+..||..++.||..|..- ++.+...++. -++.. +..|.+.+...-......|-+|+.
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTG-------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCChhhHHHHHHHHHHHHcC-------CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 67889999999999999988742 2333333332 12222 223444432233345666666654
No 80
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=44.48 E-value=54 Score=28.96 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=43.5
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCcc----eeeecCcceEEEeeCCCc
Q 002421 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIKGGSS 769 (925)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~~~~~ 769 (925)
-..++|++|.|+-- +.+.|.|++.+||.--. ...+.|.+|.. ..+-+.-..+.++.....
T Consensus 11 L~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 11 LNGLTGKPVMVKLK-WGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp HHHHTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC-
T ss_pred HHHhCCCeEEEEEc-CCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCc
Confidence 36789999999776 46999999999998665 34556667753 245566778888876544
No 81
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=43.54 E-value=49 Score=30.37 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=35.5
Q ss_pred cCeEEEeeCCCCceEEEEEEEecCCC-----CeEEEEccCCcceeeecCcceEEEeeCCCc
Q 002421 714 GSRIKVWWPMDETFYKGVVDNYDPIK-----KKHRILYADGDEEILNLKKERWELIKGGSS 769 (925)
Q Consensus 714 G~RVkV~WP~D~~wY~G~V~syd~~t-----kkH~V~YDDGD~E~L~L~~Ek~e~l~~~~~ 769 (925)
|.+|-|+|+ |..||.++|..-.... .+..|.|..-...| =+||..+..
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRl-------DEWV~~~RL 70 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRL-------DGWVGRHRI 70 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTT-------CEEEETTTE
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCccccc-------ccccCHHHh
Confidence 889999997 7899999999876543 37889998555421 256666655
No 82
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.45 E-value=27 Score=36.65 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=36.4
Q ss_pred HHhhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCCCCCCh
Q 002421 54 RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDD 100 (925)
Q Consensus 54 ~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPDAPYtD 100 (925)
-.....++.+|+-..|=.|....=.+++++||+=|..=--+|+-|+.
T Consensus 35 Frq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~ 81 (235)
T 3bu8_A 35 FRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDM 81 (235)
T ss_dssp HHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSS
T ss_pred HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCC
Confidence 45567788998888887776666788999998777776777887874
No 83
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=41.98 E-value=91 Score=37.07 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=72.3
Q ss_pred hhhHHhhhhhhcCCCCCCCh-----hHHHHHHHHHHHHhcccCC-CCCcchhHHHHHHHHhhhhceeeeeccCC-chHHH
Q 002421 81 VTSCISEITRITAPDSPYDD-----ELMKEFFQLAVSAFENLSH-ASGRYYMKALSILDTVAKVRSCLLMLDLE-CDKLV 153 (925)
Q Consensus 81 VAcCLADILRIyAPDAPYtD-----dqLKDIFqLfV~qf~~LaD-~ssp~F~q~~yLLEsLAeVKS~VLMlDLe-~ddLI 153 (925)
+=+||.-+|..|.+- |+. .+...+|+.++..|...== +-...|.|++ +=.++.. +.+ ++.++
T Consensus 354 LD~im~llf~~~~~~--~~~~~l~~~~~~~lf~~Ll~~F~~~ILpT~~sr~vQFl--~Fy~cs~-------~~~~~~~Fl 422 (649)
T 3tj1_A 354 LDSILTLVSTHVEEQ--VTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYI--MFHVSQQ-------QLELMDSFL 422 (649)
T ss_dssp HHHHHHHHHHHHHHH--SCHHHHHSSTHHHHHHHHHHHHHHTTTTSCSCSSTTHH--HHHHHTT-------SHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--cCCCccccchHHHHHHHHHHHHHHhccccccCccHHHH--HHHHHhC-------CHHHHHHHH
Confidence 456777777777654 443 3456799999999985432 3344555552 2223222 222 56666
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHh
Q 002421 154 VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASV 202 (925)
Q Consensus 154 ~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~f 202 (925)
..|++.+| .++.|..++..-..-|+..|--+-.||.+++..+|..|
T Consensus 423 ~~L~~~~~---~~~~~~~~RqaAaaYLaSflARAk~v~~~~v~~vl~~L 468 (649)
T 3tj1_A 423 VTLIDISF---AVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYL 468 (649)
T ss_dssp HHHHHHHH---CSSSCHHHHHHHHHHHHHHHHHBTTCCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66777666 46678888888888899999999999998877777654
No 84
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=41.74 E-value=95 Score=35.69 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=66.4
Q ss_pred cccCCCc--CceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeecc
Q 002421 69 LLRRSDM--DVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLD 146 (925)
Q Consensus 69 LLkHKDk--dVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlD 146 (925)
.|+|.+. .|-.-++.||..+- | ..+.+..++..+..-| . ++...-+|..|.+|..+-..-
T Consensus 299 ~l~~~n~~~aVl~ea~~~i~~l~----~----~~~~~~~~~~~L~~~L---~---~~~~niry~aL~~l~~l~~~~---- 360 (621)
T 2vgl_A 299 KVQHSNAKNAVLFEAISLIIHHD----S----EPNLLVRACNQLGQFL---Q---HRETNLRYLALESMCTLASSE---- 360 (621)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHHHS---S---CSCHHHHHHHHHHHHHHTTCT----
T ss_pred cccccchHHHHHHHHHHHHHhcC----C----cHHHHHHHHHHHHHHh---c---CCCcchHHHHHHHHHHHHhcc----
Confidence 5677766 66666666666652 2 2233343444333322 2 222234556777777663211
Q ss_pred CCchHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhc
Q 002421 147 LECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK 204 (925)
Q Consensus 147 Le~ddLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~ 204 (925)
+..+++...+..||..++.+.+..|...-.+||..++.+.. =..|+..|+.++..
T Consensus 361 -~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N--v~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 361 -FSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN--AQQIVAEMLSYLET 415 (621)
T ss_dssp -TTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh--HHHHHHHHHHHHHh
Confidence 22356777778888877745556788888899999988742 24556666666554
No 85
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=41.42 E-value=1.4e+02 Score=30.10 Aligned_cols=144 Identities=10% Similarity=0.119 Sum_probs=80.3
Q ss_pred cccCCCcCceeehhhHHhh-hhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeee-cc
Q 002421 69 LLRRSDMDVRLSVTSCISE-ITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLM-LD 146 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLAD-ILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLM-lD 146 (925)
.|.+++-.-|.-+..+|.. ++.= .|+....+....+++..+...+. .|.+-..-...+..|..||+. +- -.
T Consensus 24 ~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~--~D~n~~v~~~A~~al~~la~~----l~~~~ 96 (249)
T 2qk1_A 24 RITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQ--KDANIQAVALAAQSVELICDK----LKTPG 96 (249)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHH----HCTTT
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHh----ccccc
Confidence 3567777777777778888 7742 33322212223355665555542 233333334556666666631 11 11
Q ss_pred CCch-HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 002421 147 LECD-KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRKENQDVSPTSWKLGEKV 220 (925)
Q Consensus 147 Le~d-dLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~-----VP~eVLDvIL~~fl~~~ks~~PaAykLA~~V 220 (925)
+ . .....++-.+|+...+.. ..|...+..-|..+++..+. -...+++.|+..|... +|..+.-+-..
T Consensus 97 f--~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k----~~~vk~~al~~ 169 (249)
T 2qk1_A 97 F--SKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK----TPQIRMECTQL 169 (249)
T ss_dssp S--CHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS----SHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC----ChHHHHHHHHH
Confidence 1 2 455666777777766554 45766766667777766531 1457888888776433 45555556556
Q ss_pred HHhhhH
Q 002421 221 FTKCAA 226 (925)
Q Consensus 221 I~~Cad 226 (925)
|..|..
T Consensus 170 l~~~~~ 175 (249)
T 2qk1_A 170 FNASMK 175 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
No 86
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=41.17 E-value=7.3 Score=37.36 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=33.8
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCcce
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEE 752 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E 752 (925)
+--||.+|..-|+ +..||.|.|+.-.. .-.+.|.|+||-.-
T Consensus 6 ~v~vGq~V~ak~~-ngryy~~~V~~~~~-~~~y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVITKHR-NTRYYSCRVMAVTS-QTFYEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCCCCC-CCCCCCCEEEEEEE-EEEEEEEETTSCEE
T ss_pred ccccCCEEEEECC-CCcEEeEEEEEEee-EEEEEEEcCCCCcc
Confidence 3458899988899 58999999999886 45689999999764
No 87
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=39.73 E-value=1.1e+02 Score=32.18 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=38.2
Q ss_pred hcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHH------HHHHHHHHHhcccCCCCCcchhHHHHHHHHhhh
Q 002421 68 DLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMK------EFFQLAVSAFENLSHASGRYYMKALSILDTVAK 137 (925)
Q Consensus 68 ~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLK------DIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAe 137 (925)
.||.|.+.+||..+|-||..|..- ++..+ ..+..++..|.. +++...-...++.|-+|+.
T Consensus 89 ~lL~s~~~~vr~~Aa~~Lg~ia~~--------n~~~~~~vv~~g~l~~Ll~LL~~--~~~~~v~~~A~~ALsnl~~ 154 (296)
T 1xqr_A 89 RYLEAGAAGLRWRAAQLIGTCSQN--------VAAIQEQVLGLGALRKLLRLLDR--DACDTVRVKALFAISCLVR 154 (296)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHTT--------CHHHHHHHHHTTHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhC--------CHHHHHHHHHCCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHc
Confidence 578999999999999999998842 22222 244455555542 2233344556777777753
No 88
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=37.53 E-value=4.5e+02 Score=28.88 Aligned_cols=99 Identities=15% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhhHHhhHHHHHhhhhhhccc-CCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHH
Q 002421 28 VDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLR-RSDMDVRLSVTSCISEITRITAPDSPYDDELMKEF 106 (925)
Q Consensus 28 ~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLk-HKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDI 106 (925)
.+.++.-++.+...|+.-...+.+.+.+ ..+.-.||. ||. +.+..++..+|.||..|..- +.++.+.|
T Consensus 90 ~~~q~~a~~~~rklLs~~~~~~i~~ii~--~G~ip~Lv~--lL~~~~~~~~q~~Aa~aL~nia~~-------~~~~~~~v 158 (529)
T 3tpo_A 90 LESQLQATQAARKLLSREKQPPIDNIIR--AGLIPKFVS--FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAV 158 (529)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCCHHHHHH--TTHHHHHHH--HHTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCchHHHHHH--CCCHHHHHH--HHcCCCCHHHHHHHHHHHHHHHcC-------CHHHHHHH
Confidence 4455555666666665433333332222 122333443 554 45588999999999999743 44555555
Q ss_pred HHH-HHHHh-cccCCCCCcchhHHHHHHHHhhh
Q 002421 107 FQL-AVSAF-ENLSHASGRYYMKALSILDTVAK 137 (925)
Q Consensus 107 FqL-fV~qf-~~LaD~ssp~F~q~~yLLEsLAe 137 (925)
+.. .|..| ..|.+++.....+.+..|.+||.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 432 22222 23444444455666777777764
No 89
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=36.33 E-value=1.6e+02 Score=30.49 Aligned_cols=118 Identities=11% Similarity=0.108 Sum_probs=64.4
Q ss_pred cccCC-CcCceeehhhHHhhhhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceee
Q 002421 69 LLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCL 142 (925)
Q Consensus 69 LLkHK-DkdVRayVAcCLADILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~V 142 (925)
+|.+. |..||..++-||..|..- +.+..+. +...++.. |.+.+...-.+....|.+|+....
T Consensus 72 ~L~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~l---L~~~~~~vr~~a~~~L~~l~~~~~-- 139 (450)
T 2jdq_A 72 FLKRKENCTLQFESAWVLTNIASG-------NSLQTRIVIQAGAVPIFIEL---LSSEFEDVQEQAVWALGNIAGDST-- 139 (450)
T ss_dssp HHTCTTCHHHHHHHHHHHHHHHSS-------CHHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHHTTCH--
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHhCCCHHHHHHH---HcCCCHHHHHHHHHHHHHHccCCH--
Confidence 56777 899999999999999862 2333333 33334433 334332233445667777665311
Q ss_pred eeccCCchHHHH--HHHHHHHHHhhcCCchhHHHHHHHHHHHHhccc-CC----CcHHHHHHHHHHhh
Q 002421 143 LMLDLECDKLVV--EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDES-ED----VSWDLLRILLASVR 203 (925)
Q Consensus 143 LMlDLe~ddLI~--eLFktFFdiVr~dhp~kV~~~M~dILs~VIeES-E~----VP~eVLDvIL~~fl 203 (925)
+.-+.+. .++..+...+..+....|.......|..+.... .. +-..++..|+.-+.
T Consensus 140 -----~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~ 202 (450)
T 2jdq_A 140 -----MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202 (450)
T ss_dssp -----HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred -----HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 0111111 244555555554455667776677777776543 11 12556666666554
No 90
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=36.11 E-value=31 Score=31.30 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=27.0
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCCe
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKK 741 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkk 741 (925)
..+||+.|+|-=- |+..|.|.|..|||.+.-
T Consensus 13 ~~li~KeV~V~l~-dg~~y~G~l~tvDp~s~s 43 (86)
T 1y96_A 13 QDYIYKEVRVTAS-EKNEYKGWVLTTDPVSAN 43 (86)
T ss_dssp HHTTTCEEEEEET-TTEEEEEEEEEECTTTCC
T ss_pred HhhcCCEEEEEEc-CCCEEEEEEEEECCCceE
Confidence 5789999999876 789999999999997653
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=34.40 E-value=1.2e+02 Score=37.27 Aligned_cols=214 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhccCCCchhhHHhhHHHHH-hhhhhhcccCCCcCceeehhhHHhhhhh
Q 002421 12 EQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMK-GLITNDLLRRSDMDVRLSVTSCISEITR 90 (925)
Q Consensus 12 ~~L~~~G~KLis~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k-~LVs~~LLkHKDkdVRayVAcCLADILR 90 (925)
.++..+-..++..+.+.+-+...|+.|..+++-++-+..- ...|-++.- .+.. +..+|..++-||++|++
T Consensus 193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~--~~~ll~~l~~~~L~-------~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIY--ETNILELLSTKFMT-------SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH--SSSHHHHHHTHHHH-------SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc--chhHHHHHHHHHcC-------CHHHHHHHHHHHHHHHc
Q ss_pred hcCCCCC---CChhHHHHHHHHHHHHh-ccc--------------CCCCCcchhHHHHHHHHhhhhceeeeeccCCchHH
Q 002421 91 ITAPDSP---YDDELMKEFFQLAVSAF-ENL--------------SHASGRYYMKALSILDTVAKVRSCLLMLDLECDKL 152 (925)
Q Consensus 91 IyAPDAP---YtDdqLKDIFqLfV~qf-~~L--------------aD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe~ddL 152 (925)
.-.| .| |+ +.+-.+|.-++.++ ..+ .+.+--++.....+|-.+.+....++.-.-...++
T Consensus 264 ~~~~-~~~~~~~-~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~ 341 (1023)
T 4hat_C 264 LKIP-QDNDLIK-RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLREL 341 (1023)
T ss_dssp SCCC-SSCHHHH-HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHH
T ss_pred cccC-CchHHHH-HHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHH
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHH---HHHHHHhcc------cCCCcHHHHHHHHHHhhccC-----------------
Q 002421 153 VVEMFQHFLKVIRSNHPHFVFAAME---TIMTLVIDE------SEDVSWDLLRILLASVRKEN----------------- 206 (925)
Q Consensus 153 I~eLFktFFdiVr~dhp~kV~~~M~---dILs~VIeE------SE~VP~eVLDvIL~~fl~~~----------------- 206 (925)
+..+++.++....-+-..-+..++. .+...+..| ...+=..|+.+|+.++..+.
T Consensus 342 l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~ 421 (1023)
T 4hat_C 342 LLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFV 421 (1023)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSS
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhc
Q ss_pred -CCCCchHHHHHHHHHHhhhHhHHHHHHHHH
Q 002421 207 -QDVSPTSWKLGEKVFTKCAAKLKTNLKEAV 236 (925)
Q Consensus 207 -ks~~PaAykLA~~VI~~CadKLqp~I~q~l 236 (925)
-...-..|+..++++..+..-+...+.+.+
T Consensus 422 ~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~ 452 (1023)
T 4hat_C 422 KESDTIQLYKSEREVLVYLTHLNVIDTEEIM 452 (1023)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhccCHHHHHHHH
No 92
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=33.91 E-value=55 Score=35.72 Aligned_cols=124 Identities=7% Similarity=0.071 Sum_probs=62.9
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLE 148 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe 148 (925)
||.+.+..|+..++.||+.|.+-..|..+ ......++..++..|. +.+...-......|.+|+....-.
T Consensus 223 ll~~~~~~v~~~a~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~lL~---~~d~~v~~~a~~~L~~L~~~~~~~------ 291 (530)
T 1wa5_B 223 LFNSNKPSLIRTATWTLSNLCRGKKPQPD--WSVVSQALPTLAKLIY---SMDTETLVDACWAISYLSDGPQEA------ 291 (530)
T ss_dssp GGGSCCHHHHHHHHHHHHHHHCCSSSCCC--HHHHGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHHSSCHHH------
T ss_pred HhccCCHHHHHHHHHHHHHHhCCCCCCCc--HHHHHhHHHHHHHHHc---CCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 56678899999999999999985434433 3344556666666553 333223333455555555321000
Q ss_pred chHHHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhc
Q 002421 149 CDKLVV-EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (925)
Q Consensus 149 ~ddLI~-eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~-----VP~eVLDvIL~~fl~ 204 (925)
...++. .++..++..+... ...|......+|..+....+. +...++..|+.-|..
T Consensus 292 ~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 292 IQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 011111 2344455555432 344555555555555543322 122355555554443
No 93
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=33.82 E-value=1.1e+02 Score=33.72 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhccCCCch-hhHHhhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhh
Q 002421 34 LLDKVEHLLANVEQAPSR-SMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITR 90 (925)
Q Consensus 34 RLkkL~~eLs~lDQ~~vd-S~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILR 90 (925)
.++.+...|+.+-.+... ........+...|+. ||.|.|.+|+..++.||+.|..
T Consensus 225 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~--LL~~~~~~v~~~a~~aL~~l~~ 280 (529)
T 3tpo_A 225 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR--LLHHNDPEVLADSCWAISYLTD 280 (529)
T ss_dssp HHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH--HhcCCcHHHHHHHHHHHHHhhh
Confidence 345556666666443221 012233444445553 7899999999999999998884
No 94
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=33.67 E-value=63 Score=40.19 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC---CcHHHHHHHHHHhhccC------------CCCCchHHH
Q 002421 151 KLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED---VSWDLLRILLASVRKEN------------QDVSPTSWK 215 (925)
Q Consensus 151 dLI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~---VP~eVLDvIL~~fl~~~------------ks~~PaAyk 215 (925)
.++..||+.++.+ ...+|. +......++..+-.=... .=..||..||..|.... +....+|..
T Consensus 529 ~~~~~Ll~~ll~~-~~~~p~-l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~ 606 (1204)
T 3a6p_A 529 NDGIELLQMVLNF-DTKDPL-ILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACS 606 (1204)
T ss_dssp HHHHHHHHHHHHC-CCSCHH-HHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCChH-HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHH
Confidence 5677777776553 345665 444444433332222222 22334455554443210 111223333
Q ss_pred HHHHHHHhhhHhHHHHHHHHHH
Q 002421 216 LGEKVFTKCAAKLKTNLKEAVQ 237 (925)
Q Consensus 216 LA~~VI~~CadKLqp~I~q~l~ 237 (925)
.-..+|..|.+.|.||+.++++
T Consensus 607 al~~L~~~~~~~L~p~~~~i~~ 628 (1204)
T 3a6p_A 607 SIIKMCRDYPQLVLPNFDMLYN 628 (1204)
T ss_dssp HHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 3347899999999888876555
No 95
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=33.37 E-value=46 Score=34.60 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=35.1
Q ss_pred ccccccCeEEEeeCCCCceEEEEEEEecC--CCCeEEEEccCCcceee
Q 002421 709 NEQLVGSRIKVWWPMDETFYKGVVDNYDP--IKKKHRILYADGDEEIL 754 (925)
Q Consensus 709 ge~lVG~RVkV~WP~D~~wY~G~V~syd~--~tkkH~V~YDDGD~E~L 754 (925)
|+=.||.||-.-|- ...||.|+|+..-+ ...+..|.|+++....|
T Consensus 7 ~~l~Vg~~vlg~k~-~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~iv 53 (213)
T 3dlm_A 7 GDLIVSMRILGKKR-TKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLL 53 (213)
T ss_dssp TTEETTCEEEEECT-TSBEEEEEEEEEEEETTEEEEEEEESSSCEEEE
T ss_pred CcEEEccEEEEEec-CCcEEEEEEEEEEECCCCeEEEEEEcCCCCEEe
Confidence 45569999999995 58999999999655 34669999996665543
No 96
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=33.30 E-value=3e+02 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.1
Q ss_pred hcccCCCcCceeehhhHHhhhh
Q 002421 68 DLLRRSDMDVRLSVTSCISEIT 89 (925)
Q Consensus 68 ~LLkHKDkdVRayVAcCLADIL 89 (925)
.+|.+.|..||..++.||..|.
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 103 QLLSSPNEQILQEALWALSNIA 124 (252)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHhh
Confidence 4778889999999999999985
No 97
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=33.15 E-value=1.9e+02 Score=33.17 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=71.9
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhc-ccCCCCCcchhHHHHHHHHhhhhceeeeeccC
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE-NLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~-~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDL 147 (925)
++.++|..+|-++-.++..++.- . . |+..+++.+|. .|.|+ +|+ -+-.-|.+|+.++.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~----~---~----e~~~L~iN~l~kDl~~~-n~~--ir~lALr~L~~i~~------- 140 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNS----N---S----ELIRLINNAIKNDLASR-NPT--FMGLALHCIANVGS------- 140 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCC----C---H----HHHHHHHHHHHHHHHSC-CHH--HHHHHHHHHHHHCC-------
T ss_pred HhcCCCHHHHHHHHHHHHHHccC----C---c----HHHHHHHHHHHHhcCCC-CHH--HHHHHHHHhhccCC-------
Confidence 66677777886666666655522 1 1 45567777765 55543 343 36677888888764
Q ss_pred CchHHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHhcccC-CCcH-HHHHHHHHHhhccCCCCCchHHHHHHHHHHh
Q 002421 148 ECDKLVVEMFQHFLKVIR-SNHPHFVFAAMETIMTLVIDESE-DVSW-DLLRILLASVRKENQDVSPTSWKLGEKVFTK 223 (925)
Q Consensus 148 e~ddLI~eLFktFFdiVr-~dhp~kV~~~M~dILs~VIeESE-~VP~-eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~ 223 (925)
.+++..+...++..+. .+...-|+....--+..+..-.. .++. .+++.|..-|-..+....-+|..+...|+..
T Consensus 141 --~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 --REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp --HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 4566666666666652 34445565544444444444332 3442 5555555544333333344444444445443
No 98
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=32.99 E-value=81 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=29.8
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD 748 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD 748 (925)
||.++.+.-+... ||.++|+..+-..++-.|.||.
T Consensus 15 vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdG 49 (69)
T 3sd4_A 15 VGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKR 49 (69)
T ss_dssp TTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCC
Confidence 8999999888664 6999999987667888999984
No 99
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=32.24 E-value=85 Score=34.59 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.0
Q ss_pred hcccCCCcCceeehhhHHhhhhh
Q 002421 68 DLLRRSDMDVRLSVTSCISEITR 90 (925)
Q Consensus 68 ~LLkHKDkdVRayVAcCLADILR 90 (925)
.||.|.+..||..+|.||+.|..
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHc
Confidence 48899999999999999999874
No 100
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=31.17 E-value=43 Score=30.17 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=38.0
Q ss_pred ccccccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCcce----eeecCcceEEEee
Q 002421 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDEE----ILNLKKERWELIK 765 (925)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~E----~L~L~~Ek~e~l~ 765 (925)
..-..++|++|.|+--..++-|.|++.+||.--. .-.+.|.+|... .+.+.-..+.++.
T Consensus 24 ~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~ 89 (93)
T 1n9r_A 24 PFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIR 89 (93)
T ss_dssp --CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEE
T ss_pred HHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEE
Confidence 3447789999999876444999999999998665 344555444321 2344455555554
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=30.85 E-value=4.1e+02 Score=28.00 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHH---HHHHHHhhccCCCCCchHHHHHHHHHHhhhHhHHHHH
Q 002421 156 MFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLL---RILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (925)
Q Consensus 156 LFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVL---DvIL~~fl~~~ks~~PaAykLA~~VI~~CadKLqp~I 232 (925)
+|..+.+.++..++ .+..-..+.|..+|+....-|...+ ..|...|-..+.++--+|-+....+....++++..+|
T Consensus 168 v~~~l~~g~ksKN~-R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 168 MTPMLLDALKSKNA-RQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCCH-HHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44555555555553 4444555667778888765565555 5555555555544445555555555555556554443
No 102
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=30.83 E-value=66 Score=33.61 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=36.5
Q ss_pred ccCeEEEeeCCCCceEEEEEEEecCCCC---------eEEEEccCC-cceeeecCcceEE
Q 002421 713 VGSRIKVWWPMDETFYKGVVDNYDPIKK---------KHRILYADG-DEEILNLKKERWE 762 (925)
Q Consensus 713 VG~RVkV~WP~D~~wY~G~V~syd~~tk---------kH~V~YDDG-D~E~L~L~~Ek~e 762 (925)
||--|-.-|....+||+|.|+.+..... -.+|.|||= +...+.|.-.-++
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~ir 64 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 64 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEE
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceeccccccc
Confidence 7888999999999999999999988542 355888854 4455555443333
No 103
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=30.17 E-value=1.2e+02 Score=27.21 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=39.5
Q ss_pred cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCc---ceeeecCcceEEEee
Q 002421 712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGD---EEILNLKKERWELIK 765 (925)
Q Consensus 712 lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD---~E~L~L~~Ek~e~l~ 765 (925)
-||.+|.+.-+. +.||.+.|+.-+....+-.|.||.=+ .||+.....++.-+.
T Consensus 21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g 76 (88)
T 2eqm_A 21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLE 76 (88)
T ss_dssp CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence 399999998765 47999999999987788999998322 366666655554433
No 104
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=29.89 E-value=49 Score=28.15 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=37.8
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCcc----eeeecCcceEEEeeC
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIKG 766 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~~ 766 (925)
..++|++|.|+-- +.+-|.|++.+||.--. ...+.|..+.. ..+-+.-..+.++..
T Consensus 10 ~~~~~~~V~V~L~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~ 72 (77)
T 1i4k_A 10 NRSLKSPVIVRLK-GGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSP 72 (77)
T ss_dssp HTTTTSEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEE
T ss_pred HHhCCCEEEEEEc-CCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEe
Confidence 5679999999766 57999999999998665 34455543322 234445566666554
No 105
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.14 E-value=4.2e+02 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=16.9
Q ss_pred cccCCCcCceeehhhHHhhhh
Q 002421 69 LLRRSDMDVRLSVTSCISEIT 89 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADIL 89 (925)
+|.+.|..||..++-||..+-
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~ 51 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRG 51 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHccC
Confidence 567888899988888888764
No 106
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=28.72 E-value=85 Score=37.86 Aligned_cols=41 Identities=20% Similarity=0.394 Sum_probs=29.4
Q ss_pred CcCceeehhhHHhhhhhhcCCCCCCC---hhHHHHHHHHHHHHhcc
Q 002421 74 DMDVRLSVTSCISEITRITAPDSPYD---DELMKEFFQLAVSAFEN 116 (925)
Q Consensus 74 DkdVRayVAcCLADILRIyAPDAPYt---DdqLKDIFqLfV~qf~~ 116 (925)
+.++|..+.-||++|+....| |++ +..+..+|..++.++..
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~ 290 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIAT 290 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999988544 332 34666777777775543
No 107
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=28.62 E-value=33 Score=30.24 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHhhhhhhcCC-CCCCCh---hHHHHHHHHHHHH
Q 002421 84 CISEITRITAP-DSPYDD---ELMKEFFQLAVSA 113 (925)
Q Consensus 84 CLADILRIyAP-DAPYtD---dqLKDIFqLfV~q 113 (925)
=|..+||+|+| ++||+. +||+....-.|+.
T Consensus 27 RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 27 KIHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp HHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 36789999999 478976 9999988877765
No 108
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=28.45 E-value=88 Score=32.46 Aligned_cols=124 Identities=8% Similarity=0.108 Sum_probs=62.8
Q ss_pred cccC-CCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccC
Q 002421 69 LLRR-SDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDL 147 (925)
Q Consensus 69 LLkH-KDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDL 147 (925)
+|.+ .+..||..++.||..|.+-..|...+ ..+..++..++..+. +.+..........|.+|+....-.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~~l~~~~~~~----- 226 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEF--AKVSPCLNVLSWLLF---VSDTDVLADACWALSYLSDGPNDK----- 226 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--GGTGGGHHHHHHHTT---CCCHHHHHHHHHHHHHHTSSSHHH-----
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--HHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHCCCcHH-----
Confidence 4453 78899999999999999865454433 223455555555543 333223333445555554321000
Q ss_pred CchHHH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-----CcHHHHHHHHHHhhc
Q 002421 148 ECDKLV-VEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-----VSWDLLRILLASVRK 204 (925)
Q Consensus 148 e~ddLI-~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~-----VP~eVLDvIL~~fl~ 204 (925)
...++ ..++..++..+.. ....|......+|..+....+. +...++..|+.-+..
T Consensus 227 -~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 227 -IQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp -HHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred -HHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 00111 1234455555543 2345655566666666554332 222456666655543
No 109
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=28.15 E-value=1.8e+02 Score=27.42 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=57.5
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeee
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLL 143 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VL 143 (925)
+|.+.|.+||..++-||..|.+-. ++.... +...++.. |.+.+...-......|.+|+.-.
T Consensus 10 ~L~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~i~~L~~l---l~~~~~~v~~~a~~~L~~l~~~~---- 75 (252)
T 4hxt_A 10 LLTSTDSETQKEAARDLAEIASGP-------ASAIKAIVDAGGVEVLVKL---LTSTDSEVQKEAARALANIASGP---- 75 (252)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTSC-------HHHHHHHHHTTHHHHHHHH---TTCSCHHHHHHHHHHHHHHTTSC----
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCC-------cHHHHHHHHCCCHHHHHHH---HhCCCHHHHHHHHHHHHHHHcCC----
Confidence 577888999999999998887542 122222 33333333 34444333444556666665421
Q ss_pred eccCCchHHHH--HHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCc-----HHHHHHHHHHhh
Q 002421 144 MLDLECDKLVV--EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVS-----WDLLRILLASVR 203 (925)
Q Consensus 144 MlDLe~ddLI~--eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP-----~eVLDvIL~~fl 203 (925)
-+....+. ..+..++...+.. ...|......+|..+....+..- ..++..|+.-+.
T Consensus 76 ---~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~ 138 (252)
T 4hxt_A 76 ---DEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138 (252)
T ss_dssp ---HHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred ---hHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 00111111 1344445544432 35566666666666654332211 234555555444
No 110
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=27.80 E-value=1.5e+02 Score=27.60 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=35.1
Q ss_pred cccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHH-----HHHHHHHHhcccCCCCCcchhHHHHHHHHhh
Q 002421 69 LLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKE-----FFQLAVSAFENLSHASGRYYMKALSILDTVA 136 (925)
Q Consensus 69 LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKD-----IFqLfV~qf~~LaD~ssp~F~q~~yLLEsLA 136 (925)
||+|.|.+||..++.||..|.+- +++.... ++..++..| .+.+...-......|-+|+
T Consensus 20 LL~s~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 20 QLNSPDQQELQSALRKLSQIASG-------GNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIA 82 (210)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHT---TCSCHHHHHHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHHcC-------CHHHHHHHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHh
Confidence 78899999999999999998742 2222222 334444443 4443333444566666665
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=25.99 E-value=8.1e+02 Score=28.28 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=44.7
Q ss_pred cCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhccc-------CCCCCc---chhHHHHHHHHhhhh
Q 002421 71 RRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENL-------SHASGR---YYMKALSILDTVAKV 138 (925)
Q Consensus 71 kHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~L-------aD~ssp---~F~q~~yLLEsLAeV 138 (925)
.+.|.++.-.+..|+--|+|++.+..|...++...+++++-...... .+++.+ ...+.+-+|.+||..
T Consensus 492 ~~~d~~l~~~~~s~lwa~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lrv~~ig~Lg~LA~~ 569 (684)
T 4gmo_A 492 DSADLKLATQVTSLAWAVARVLHGETPTDGNPHRKFISLYHSSKQQAGGNSNSIEEPEDPFQGLGVKCIGVVGSLAHD 569 (684)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHGGGSCCTTCHHHHHHHHHHHHTTC-------------CTTSHHHHHHHHHHHHTST
T ss_pred ccccHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHHHHHHHhcCC
Confidence 35566666666678999999999998888777777777765544321 223333 345678888888765
No 112
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=25.36 E-value=2.3e+02 Score=36.46 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=86.1
Q ss_pred hhHHhhhhhhcCCCCCCChhHHHHHHHHHHHHhcccCCCCCcchhHHHHHHHHhhhhceeeeeccCCchHHHHHHHHHHH
Q 002421 82 TSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFL 161 (925)
Q Consensus 82 AcCLADILRIyAPDAPYtDdqLKDIFqLfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLMlDLe~ddLI~eLFktFF 161 (925)
..+|+++|| |-|.+.+++..|..=|++.|..|.-.+=|.+-.+.-+|-+-..-+. || .=|..+|..++
T Consensus 174 li~l~~mFr----Dv~Ls~eel~~VV~Kv~~~l~~l~l~ElPpLvyQLLlLs~kg~k~~-IL-------~gl~~yF~~~~ 241 (1308)
T 3s51_A 174 MIQLTSVFK----DVCLTPEEMNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKGSRRS-VL-------DGIIAFFRELD 241 (1308)
T ss_dssp HHHHHHHGG----GSCCCHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTTSCHHH-HH-------HHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHHHHHHhhhcCChhhchHHHHHHHHHhcccchHH-HH-------HHHHHHHHHhh
Confidence 456677776 6699999999999999999999998888988777777765553222 22 13455665554
Q ss_pred HHhh-----------cCCc-hhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCC---CCchHHHHHHHHHHhhhH
Q 002421 162 KVIR-----------SNHP-HFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQD---VSPTSWKLGEKVFTKCAA 226 (925)
Q Consensus 162 diVr-----------~dhp-~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks---~~PaAykLA~~VI~~Cad 226 (925)
.-.+ ..+| ..++..-.+||-.|-.. -...+++...+|..|....+. .....|.+|.-+.-.--.
T Consensus 242 ~~~~~~~~~~~~~d~~~~s~~elr~vEgTVL~HI~~A-ik~D~~Lgre~LK~~K~~~~~~p~~~l~PF~lalLLsvarI~ 320 (1308)
T 3s51_A 242 KQHREEQSSDELSELITAPADELYHVEGTVILHIVFA-IKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQ 320 (1308)
T ss_dssp HHHHHHHCC-------CCSHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHCCSSTHHHHHHCCHHHHHHHHHHTTSG
T ss_pred hhcchhccCCcccccccCCHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHhhhcccCccccCChHHHHHHHHHhcch
Confidence 3211 1244 44555555666655333 267888889999888765421 123334444333222233
Q ss_pred hHHHHHHHHHH
Q 002421 227 KLKTNLKEAVQ 237 (925)
Q Consensus 227 KLqp~I~q~l~ 237 (925)
+++..+..+|.
T Consensus 321 Rf~e~v~d~Lk 331 (1308)
T 3s51_A 321 RFEEQVFDLLK 331 (1308)
T ss_dssp GGHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 44444444444
No 113
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=24.84 E-value=7.1e+02 Score=27.24 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=37.9
Q ss_pred cccCC-CcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHHH-HHHH-hcccCCCCCcchhHHHHHHHHhhh
Q 002421 69 LLRRS-DMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQL-AVSA-FENLSHASGRYYMKALSILDTVAK 137 (925)
Q Consensus 69 LLkHK-DkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFqL-fV~q-f~~LaD~ssp~F~q~~yLLEsLAe 137 (925)
||.+. +..||..+|.||..|..- ++++.+.|... .|.. +..|.+++...-.+....|.+||.
T Consensus 108 lL~~~~~~~lq~~Aa~aL~nias~-------~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 108 FLGKTDCSPIQFESAWALTNIASG-------TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHTS-------CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHhcC-------CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 56554 478999999999998743 45566655542 2222 223444444455556777777763
No 114
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=23.27 E-value=2.9e+02 Score=25.32 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhhhHhHHHH
Q 002421 155 EMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTN 231 (925)
Q Consensus 155 eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~CadKLqp~ 231 (925)
+-|...+..++. ....+ .+++.-+|+-. .-..+|+++|...|.......--+..-|+-+|+.+|..+-.+|
T Consensus 7 ~~l~~~L~~L~~-s~~sI----~~~s~w~l~~~-~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y 77 (135)
T 4fu3_A 7 SALEKKLSELSN-SQQSV----QTLSLWLIHHR-KHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEF 77 (135)
T ss_dssp HHHHHHHHHCCS-STTHH----HHHHHHHHHTG-GGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHH
T ss_pred HHHHHHHHHccc-cHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHH
Confidence 345555555442 23333 34444444433 3367788999998887666555666777889999987554343
No 115
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=22.83 E-value=72 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=29.7
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCc
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGD 750 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD 750 (925)
..++|++|.|+-- +.+.|.|++.+||.--. ...+.|.+|.
T Consensus 10 ~~~~~k~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~ 52 (75)
T 4emk_B 10 NKVIGKKVLIRLS-SGVDYKGILSCLDGYMNLALERTEEYVNGK 52 (75)
T ss_dssp HHTTTSEEEEECT-TSCEEEEEEEEECTTCEEEEEEEEEEETTE
T ss_pred HHhCCCeEEEEEc-CCcEEEEEEEEEcCcceEEEccEEEEecCC
Confidence 5679999999766 67999999999998554 2344555543
No 116
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=22.74 E-value=68 Score=27.92 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=30.6
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCC
Q 002421 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADG 749 (925)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDG 749 (925)
.-..++|++|.|+-- |.+-|.|++.+||.--. ...+.|..|
T Consensus 19 ~L~~~~~~~V~V~Lk-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~ 62 (83)
T 1mgq_A 19 ALGNSLNSPVIIKLK-GDREFRGVLKSFDLHMNLVLNDAEELEDG 62 (83)
T ss_dssp HHHHTTTSEEEEEET-TTEEEEEEEEEECTTCCEEEEEEEEEETT
T ss_pred HHHHhCCCEEEEEEc-CCcEEEEEEEEECCCceeEEccEEEEecC
Confidence 346779999999766 67999999999998665 344445433
No 117
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=22.69 E-value=73 Score=26.97 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=36.5
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCcc----eeeecCcceEEEee
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIK 765 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~ 765 (925)
..++|++|.|.-- |.+-|.|++.+||.--. ...+.|..|.. ..+-+.-..+.++.
T Consensus 10 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~ 71 (75)
T 1h64_1 10 HRSLDKDVLVILK-KGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAIS 71 (75)
T ss_dssp HTTTTSEEEEEET-TSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCEEEEEEC-CCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEE
Confidence 5679999999766 67999999999998665 34555544321 12334455555544
No 118
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=22.53 E-value=2.7e+02 Score=25.63 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=38.5
Q ss_pred ccccccccCeEEEeeCCCCceEEEEEEEecCCCCe---EEE-EccCCcc----eeeecCcceEEEeeCCCc
Q 002421 707 ALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKK---HRI-LYADGDE----EILNLKKERWELIKGGSS 769 (925)
Q Consensus 707 ~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tkk---H~V-~YDDGD~----E~L~L~~Ek~e~l~~~~~ 769 (925)
..-..++|++|.|+-- +.+-|.|++.+||.--.- -.+ .+.||+. ..+.+.-..+.|+..+..
T Consensus 19 ~lL~~~igk~V~V~Lk-~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~ 88 (105)
T 4emh_A 19 TLLNATQGRPILVELK-NGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDE 88 (105)
T ss_dssp -------CCEEEEEET-TSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---
T ss_pred HHHHHhCCCEEEEEEC-CCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHH
Confidence 3457789999999776 458899999999986653 223 3457852 456677788888876533
No 119
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=22.43 E-value=57 Score=28.24 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.0
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEc
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILY 746 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~Y 746 (925)
..++|++|.|+-- +.+-|.|++.+||.--. ...+.|
T Consensus 17 ~~~~~~~V~V~l~-~g~~~~G~L~~~D~~mNlvL~d~~e~ 55 (81)
T 1i8f_A 17 QDSIGKQVLVKLR-DSHEIRGILRSFDQHVNLLLEDAEEI 55 (81)
T ss_dssp HTTTTSEEEEEEG-GGEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred HHHCCCeEEEEEc-CCcEEEEEEEEEcCCCeeEEccEEEE
Confidence 6779999999766 67999999999998765 355555
No 120
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=22.43 E-value=81 Score=26.89 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred cccccCeEEEeeCCCCceEEEEEEEecCCCC---eEEEEccCCcc----eeeecCcceEEEee
Q 002421 710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKK---KHRILYADGDE----EILNLKKERWELIK 765 (925)
Q Consensus 710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tk---kH~V~YDDGD~----E~L~L~~Ek~e~l~ 765 (925)
..++|++|.|.--.+++-|.|++.+||.--. ...+.|..|.. ..+.+.-..+.++.
T Consensus 11 ~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~ 73 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQ 73 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEE
T ss_pred HHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEE
Confidence 5679999999886443999999999998665 34444544332 12334455555554
No 121
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=22.34 E-value=5.3e+02 Score=29.83 Aligned_cols=94 Identities=18% Similarity=0.311 Sum_probs=58.9
Q ss_pred HhhHHHHHhhhhhhcccCCCcCceeehhhHHhhhhhhcCCCCCCChhHHHHHHH---HHHHHhc-ccCCCCCcchhHHHH
Q 002421 55 DALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQ---LAVSAFE-NLSHASGRYYMKALS 130 (925)
Q Consensus 55 ~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLADILRIyAPDAPYtDdqLKDIFq---LfV~qf~-~LaD~ssp~F~q~~y 130 (925)
..+.|+... |++.|..+|..+|.+|++|. .+..++..|. ++...|. .|.|++..--...+.
T Consensus 34 ~~i~Pll~~------L~S~~~~~r~~A~~al~~l~---------~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~g 98 (684)
T 4gmo_A 34 DKILPVLKD------LKSPDAKSRTTAAGAIANIV---------QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWE 98 (684)
T ss_dssp HTTHHHHHH------HSSSCCSHHHHHHHHHHHHT---------TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred hhHHHHHHH------cCCCCHHHHHHHHHHHHHHH---------cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHH
Confidence 455665442 68999999999999999996 2333333333 3334444 478888777788889
Q ss_pred HHHHhhhh---ceeeeeccCCchHHHHHHHHHHHHH
Q 002421 131 ILDTVAKV---RSCLLMLDLECDKLVVEMFQHFLKV 163 (925)
Q Consensus 131 LLEsLAeV---KS~VLMlDLe~ddLI~eLFktFFdi 163 (925)
.|.+|+.. ..|.-|...+--.-|..+|+.+...
T Consensus 99 aLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~ 134 (684)
T 4gmo_A 99 ILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLET 134 (684)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHH
Confidence 99998743 4444444444333344555544443
No 122
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=22.19 E-value=72 Score=31.16 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=43.3
Q ss_pred hhcCCchhHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhhhHhHHHHH
Q 002421 164 IRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNL 232 (925)
Q Consensus 164 Vr~dhp~kV~~~M~dILs~VIeESE~VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~CadKLqp~I 232 (925)
.++.+...=...+.+|. .+|.....-|.+.+..|...|...+....-.|..|...++.+|+..+...|
T Consensus 24 Ts~~~~~~Dw~~~leic-D~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 24 TNEYNTTEDWSLIMDIC-DKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp TCTTCSSCCHHHHHHHH-HHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHH-HHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333333333344444 444455567888888888888766655556677777888888888876554
No 123
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=21.91 E-value=1.7e+02 Score=29.16 Aligned_cols=45 Identities=9% Similarity=0.131 Sum_probs=35.1
Q ss_pred cccCeEEEeeCC-CCceEEEEEEEec----CCCCeEEEEccCCcceeeec
Q 002421 712 LVGSRIKVWWPM-DETFYKGVVDNYD----PIKKKHRILYADGDEEILNL 756 (925)
Q Consensus 712 lVG~RVkV~WP~-D~~wY~G~V~syd----~~tkkH~V~YDDGD~E~L~L 756 (925)
.+--||=-||++ ...||.++...-. -...+..|+|||+..-.++.
T Consensus 7 ~~~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~~V~~ 56 (153)
T 2fhd_A 7 SFKNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMSTVNS 56 (153)
T ss_dssp CGGGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEEEEET
T ss_pred cccceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCCCccCh
Confidence 446788899995 6899999999877 35678999999996555433
No 124
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=21.89 E-value=93 Score=27.29 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=28.0
Q ss_pred CccccccccCeEEEeeCCCCceEEEEEEEecCCCC
Q 002421 706 PALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK 740 (925)
Q Consensus 706 ~~~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk 740 (925)
...-..++|++|.|.-- |.+.|.|++.+||.--.
T Consensus 6 ~~~L~~~~~k~V~V~l~-~gr~~~G~L~~~D~~mN 39 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQ-DGRIFIGTFKAFDKHMN 39 (91)
T ss_dssp -CCCGGGTTSEEEEEET-TCCEEEEEEEECCTTCC
T ss_pred hHHHHHHcCCcEEEEEC-CCeEEEEEEEEECCCCe
Confidence 34457889999999876 67999999999998665
No 125
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=21.54 E-value=70 Score=32.22 Aligned_cols=90 Identities=7% Similarity=0.033 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhcccCC-CcHHHHHHHHHHhhccCCCCCchHHHHHHHHHHhhhHhH--
Q 002421 152 LVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESED-VSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKL-- 228 (925)
Q Consensus 152 LI~eLFktFFdiVr~dhp~kV~~~M~dILs~VIeESE~-VP~eVLDvIL~~fl~~~ks~~PaAykLA~~VI~~CadKL-- 228 (925)
+-..||..-.++..+.++ .+......-|...|++... +|+ |..|+=+.-+...++..+|+.||..+.-.+
T Consensus 65 IQ~~Lf~lga~la~~~~~-~i~~~~v~~LE~~id~~~~~l~p------l~~FILPgg~~~aA~Lh~aRtv~RRAER~~v~ 137 (183)
T 2zhy_A 65 IQHDLFDLGGELCIPGHA-AITDAHLARLDGWLAHYNGQLPP------LEEFILPGGARGAALAHVCRTVCRRAERSIVA 137 (183)
T ss_dssp HHHHHHHHHHHHHSTTCC-CCCHHHHHHHHHHHHHHHHTSCC------CCSCCBSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHhhCCC------CcceeeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554444444332 2322333334444444322 222 333443333444455566888888776543
Q ss_pred -------HHHHHHHHHhcCCCCcchHHHHHHHhc
Q 002421 229 -------KTNLKEAVQSRGIALDDYAEIVACICG 255 (925)
Q Consensus 229 -------qp~I~q~l~s~Gi~Ld~Y~eIV~sIcq 255 (925)
.+.+.+|||.+ ++.++.++-
T Consensus 138 l~~~~~v~~~~~~yLNRL-------SD~lFvlaR 164 (183)
T 2zhy_A 138 LGASEPLNAAPRRYVNRL-------SDLLFVLAR 164 (183)
T ss_dssp HHHHSCCCSHHHHHHHHH-------HHHHHHHHH
T ss_pred HHhhcCCCHHHHHHHHHH-------HHHHHHHHH
Confidence 34566777766 776666554
No 126
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=20.56 E-value=83 Score=28.20 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=26.5
Q ss_pred cccccccCeEEEeeCCCCceEEEEEEEecCCCC
Q 002421 708 LNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKK 740 (925)
Q Consensus 708 ~ge~lVG~RVkV~WP~D~~wY~G~V~syd~~tk 740 (925)
.-..++|++|.|.-- +.+.|.|++.+||.--.
T Consensus 13 lL~~~~~~~V~V~l~-~gr~~~G~L~~~D~~mN 44 (93)
T 4emg_A 13 LVRLSLDEIVYVKLR-GDRELNGRLHAYDEHLN 44 (93)
T ss_dssp HHHTTTTSEEEEEET-TTEEEEEEEEEECTTCC
T ss_pred HHHHhCCCEEEEEEC-CCcEEEEEEEEECCccc
Confidence 336679999999875 77999999999998654
No 127
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.17 E-value=1.4e+02 Score=32.72 Aligned_cols=74 Identities=23% Similarity=0.226 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhccCCCchhhHHhhHHHHHhhhhhhcccCCCcCceeehhhHHhh
Q 002421 8 IELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISE 87 (925)
Q Consensus 8 ~ele~~L~~~G~KLis~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHKDkdVRayVAcCLAD 87 (925)
..+++.+.+-|-..+.+ |.+|...|..+=++... .+.+-...++-+.+..+.+.+- ||+++.|++--
T Consensus 180 ~~~~e~~~~~~L~~l~~----------~~~l~~~L~~~l~~~~~--~~~i~~wik~n~~~~~~~~~~f-ir~L~t~v~~~ 246 (364)
T 3l6a_A 180 DRMLEILEGKGLSFLFP----------LLKLEKELLKQIKLDPS--PQTIYKWIKDNISPKLHVDKGF-VNILMTSFLQY 246 (364)
T ss_dssp HHHHHHHHHHTCGGGCH----------HHHHHHHHHHHHHHCCC--HHHHHHHHHHHSCHHHHTCHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHhCCCcccCC----------HHHHHHHHHHHHHcCCC--hHHHHHHHHHhCCcccCCCHHH-HHHHHHHHHHH
Confidence 34666666666544431 23444444444232222 3445555666666666655544 67666666666
Q ss_pred hhhhcCC
Q 002421 88 ITRITAP 94 (925)
Q Consensus 88 ILRIyAP 94 (925)
|.+-..|
T Consensus 247 ~~~~~~~ 253 (364)
T 3l6a_A 247 ISSEVNP 253 (364)
T ss_dssp HHHHHC-
T ss_pred HHHhccc
Confidence 6554443
Done!