Citrus Sinensis ID: 002422

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920----

MDHQRSSLGNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSALRASLKKAKRKSLGESDIYLESKSDDYDMPLVNMKNNDYPSVSGKKTLEKVSKSHFRYSPETPPTRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSGMDSSRNRSQRSFDPSPTMEYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKLVLDPK

ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHcccccccccccEEEEEcccccEEEcHHHHHHccccccccccccccccccccccccccHHHHHHHHcHHHHHHcccccccccccccccHHcccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccEEccHHHHHHHHHHHccccEEEEEccccEEEEccccccccccccccEEEEccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

cccccccccccccccccccHccccccccccEEccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccHcccccccccccccccccccccccccccccEccccccEEEEEcccccccccHHHHHHHcccccHHHHHHHcccccccccccHHEcccccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEccccccEEEEccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHcccccccEEEHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccEEEcccccccccccHHHHHHHHHccccEEEEcHHHccccccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEEcHHHHHccccccccccccccEEEEcccccccHHHHHHccHHHHHHHHHcccccccccccccEEEEEEcccccccccccccEEEEEcccccccccccccEEEEcHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccHccccccccccccccHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEccHccHHHHHHHHHHHHHHHccccccccccEEccccccEEEEcHHHHHHHHHHHccccEEEEEccccEEEEcccccHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

mdhqrsslgngednggipddlrckrsdgkqwrctamsmpdktvCEKHYIQAKRRAANSALRASLKKAKrkslgesdiylesksddydmplvnmknndypsvsgkktLEKVSKshfryspetpptrgmsarnplkanddsqrDVAEYEENlrsyktpphsgmdssrnrsqrsfdpsptmeysegsmnssedtggqichqcrrndreRVVWCVkcdkrgycdscistwysdipleelekvcpacrgscnckaclradnMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCnicripiidyhrhcgncmydlclSCCQDLREAstsvgkeefsendriqdtenaSEQVKTSKLRLNLLekfpgwkanndgsipcppneyggcgyrslnlSRIFKMNWVAKLVKNVEEMVsgckvcdsetllntgsydhslcqyahredrdgnflycpsshdirsegignfrkhwvkgepvivkqvcdsssmsiwdpkdiWRGIREtadektkdeNRIVKaidcldwsEVDIELGEFikgysegrvredgwpemlklkdwpspsaseefllyhkpefisklplLEYIHSRLGFLNvaaklphyslqndvgpkiymsygtyeeldrgnsvknlhfnMPDMVYLLVHMgevklpttedekiqsssresevnesvgdpekvsgegsfpdlslgghdvnnehveksatdedeimedqgvetgtaeektvkserlngysdvsekthpgahwdvfrrqDVPKLIEYLREHwtdfgrpdgvtndfvthplYGEVVYLngdhkrklkeefgvepwsfeqhlgeavfipagcpfqvrnLQSTVQLGldflfpesVGEAVRLAEEIrclpndheAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKLVLDPK

mdhqrsslgngednggipddlrckrsdgkqwrctamsmpdktVCEKHYIQAKRRAANSALRASlkkakrkslgesdiylesksddydmplvnmknndypsvsgKKTLekvskshfryspetpptrgmsarnplkanddsqRDVAEYEenlrsyktpphsgmdssrnrsqrsfdpsPTMEYSEgsmnssedtgGQICHQCRRNDRERVVWCVKCdkrgycdscisTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARaklsadeqMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSvgkeefsendriqdtenaseqvktsKLRLNLLEKFpgwkanndgsiPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKqvcdsssmsiwdpkdiwrgiretadektkdenrivkaidcldwsevDIELGEfikgysegrvredgWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLpttedekiqsssresevnesvgdpekvsgegSFPDLSLGGHDVNNEHVeksatdedeimedqgvetgtaeektvkserlngysdvsekthpgahwdvfrRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLyaassaikevqklvldpk

MDHQRSSLGNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQakrraansalraslkkakrkslGESDIYLESKSDDYDMPLVNMKNNDYPSVSGKKTLEKVSKSHFRYSPETPPTRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSGMDSSRNRSQRSFDPSPTMEYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQsssresevnesvGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKLVLDPK

******************************WRCTA******TVCEKHYI*************************************************************************************************************************************************ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDL*********************************RLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETAD***KDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWP***ASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVK********************************************************************************************GAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQ*******

******************************************************************************************V*********************************************************************M*SSRNRSQRSFDPSPTMEYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIK*RIREIPVLDKLQHLYCLLSAVLPVVKQIHQI***************IDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQD*********************************************KANNDGSIPCPPN************SRIFKMNWVAK********************************YAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETAD*****ENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQS********************GSFPDLSLGGHD**************************************************AHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKLVL***

***********EDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQA*********************GESDIYLESKSDDYDMPLVNMKNNDYPSVSGKKTLEKVS****************SARNPLKANDDSQRDVAEYEENLRSYK****************************************ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLR****************************TSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPT**************************GEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKLVLDPK

*****************PDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSAL*********************************************************************************DVAE*****RSY******************************************CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREAS**********************************EKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPE**********LSLGGHDVNNEHVEKSATDEDEIMEDQ***************************HPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKLVL***

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		924	2.2.26 [Sep-21-2011]
Q7LBC6		1761	Lysine-specific demethyla	yes	no	0.414	0.217	0.307	4e-41
Q6ZPY7		1562	Lysine-specific demethyla	no	no	0.419	0.248	0.303	2e-40
Q6IRB8		1331	Lysine-specific demethyla	N/A	no	0.356	0.247	0.299	8e-38
Q5ZIX8		1325	Lysine-specific demethyla	no	no	0.365	0.255	0.279	3e-37
Q5HZN1		1334	Lysine-specific demethyla	N/A	no	0.356	0.246	0.294	1e-36
Q9Y4C1		1321	Lysine-specific demethyla	no	no	0.354	0.248	0.272	2e-35
Q6PCM1		1323	Lysine-specific demethyla	no	no	0.354	0.247	0.273	4e-35
Q63679		1214	Lysine-specific demethyla	no	no	0.354	0.270	0.270	6e-35
Q15652		2540	Probable JmjC domain-cont	no	no	0.245	0.089	0.250	2e-13
Q69ZK6		2350	Probable JmjC domain-cont	no	no	0.208	0.082	0.271	1e-12

>sp\|Q7LBC6\|KDM3B_HUMAN Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2	Back alignment and function desciption

 Score =  170 bits (431), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 148/482 (30%), Positives = 224/482 (46%), Gaps = 99/482 (20%)

Query: 434  KNVEEMVSGCKVCDSETLLNTGSYDHS-LCQYAHREDRDGNFLYCPSSHDIRSEGIGNFR 492
            K V+EMV G  V D  T        HS LC        DG  L      +  +  I  FR
Sbjct: 1364 KEVKEMVMGLNVLDPHT-------SHSWLC--------DGRLLCLHDPSNKNNWKI--FR 1406

Query: 493  KHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV-D 551
            + W +G+PV+V  V       +W P        E   ++  D++  V  ++C + + + D
Sbjct: 1407 ECWKQGQPVLVSGVHKKLKSELWKP--------EAFSQEFGDQD--VDLVNCRNCAIISD 1456

Query: 552  IELGEFIKGYSE--GRVR-EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIH 608
            +++ +F  G+     R+R EDG P +LKLKDWP      + +     + +  LPL EY  
Sbjct: 1457 VKVRDFWDGFEIICKRLRSEDGQPMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK 1516

Query: 609  SRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMGE 668
             R G LN+A++LP Y ++ D+GPK+Y +YG     DR     NLH ++ D V ++V++G 
Sbjct: 1517 -RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVG- 1574

Query: 669  VKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDE 728
              +P  E                                  G HD   E V K+      
Sbjct: 1575 --IPIGE----------------------------------GAHD---EEVLKT------ 1589

Query: 729  IMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDF 788
                  ++ G A+E  V  +R++   D  EK  PGA W ++  +D  K+ E LR+     
Sbjct: 1590 ------IDEGDADE--VTKQRIH---DGKEK--PGALWHIYAAKDAEKIRELLRK----V 1632

Query: 789  GRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVR 848
            G   G  N     P++ +  YL+   +++L EE+GV+ W+  Q LG+AVFIPAG P QV 
Sbjct: 1633 GEEQGQENPPDHDPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVH 1692

Query: 849  NLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN---DHEAKLQVLEVRQRKLFQEVGKIS 905
            NL S +++  DF+ PE V    RL +E R L N   +HE KLQV  +    +   VG + 
Sbjct: 1693 NLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAVGTLK 1752

Query: 906  LY 907
             +
Sbjct: 1753 AH 1754

Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Demethylation of Lys residue generates formaldehyde and succinate. May have tumor suppressor activity.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q6ZPY7\|KDM3B_MOUSE Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2	Back alignment and function description

>sp\|Q6IRB8\|KD3AA_XENLA Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-a PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIX8\|KDM3A_CHICK Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1	Back alignment and function description

>sp\|Q5HZN1\|KD3AB_XENLA Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-b PE=2 SV=1	Back alignment and function description

>sp\|Q9Y4C1\|KDM3A_HUMAN Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=4	Back alignment and function description

>sp\|Q6PCM1\|KDM3A_MOUSE Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1	Back alignment and function description

>sp\|Q63679\|KDM3A_RAT Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1	Back alignment and function description

>sp\|Q15652\|JHD2C_HUMAN Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2	Back alignment and function description

>sp\|Q69ZK6\|JHD2C_MOUSE Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		924
359487562		946	PREDICTED: uncharacterized protein LOC10	0.981	0.958	0.713	0.0
255542696		923	transcription factor, putative [Ricinus	0.963	0.964	0.726	0.0
224123112		973	predicted protein [Populus trichocarpa]	0.971	0.922	0.673	0.0
224123790		979	predicted protein [Populus trichocarpa]	0.967	0.913	0.670	0.0
356574955		923	PREDICTED: uncharacterized protein LOC10	0.946	0.947	0.656	0.0
357441701		930	PsbP-like protein [Medicago truncatula]	0.957	0.951	0.635	0.0
356535073		941	PREDICTED: uncharacterized protein LOC10	0.952	0.935	0.643	0.0
449523029		936	PREDICTED: uncharacterized protein LOC10	0.972	0.960	0.613	0.0
449454087		931	PREDICTED: uncharacterized protein LOC10	0.967	0.960	0.606	0.0
30680933		930	WRC, zf-4CXXC-R1 transcription factor an	0.937	0.931	0.571	0.0

>gi\|359487562\|ref\|XP_002279731.2\| PREDICTED: uncharacterized protein LOC100249389 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1353 bits (3502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/931 (71%), Positives = 754/931 (80%), Gaps = 24/931 (2%)

Query: 1   MDHQRSSLGNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANSAL 60
           MDH RS+ GNGEDN GIP+DLRCKRSDGKQWRC+AMSMPDKTVCEKHYIQAK+RAANSAL
Sbjct: 1   MDHPRSTSGNGEDNVGIPEDLRCKRSDGKQWRCSAMSMPDKTVCEKHYIQAKKRAANSAL 60

Query: 61  RASLKKAKRKSLGESDIYLESKSDDYDMPLVNMKNNDYP-SVSGKKTLEKVSKSHFRYSP 119
           RASLKKAKRKSLGE+D+YLESKSDD+DMPLVN K  DYP SVSG K  EKV+K   RYSP
Sbjct: 61  RASLKKAKRKSLGETDVYLESKSDDFDMPLVNTKAADYPVSVSGNKYKEKVTKKQVRYSP 120

Query: 120 ETPPTRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSGMDSSRNRSQRSFDPSP-TM 178
           ETPP R +S R+ LK NDDSQR+  ++EEN RSY+T P S MDSSR +SQRS D S    
Sbjct: 121 ETPPVRSVSIRSSLKPNDDSQRET-QFEENRRSYRTTPLSVMDSSRTKSQRSLDVSAMAD 179

Query: 179 EYSEGSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKV 238
                + +S ++ GGQ CHQCRRNDR+RV+WC++CDKRGYCDSCISTWYSDIPLEE++K+
Sbjct: 180 YSDGSTDSSDDENGGQTCHQCRRNDRDRVIWCLRCDKRGYCDSCISTWYSDIPLEEIQKI 239

Query: 239 CPACRGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVEL 298
           CPACRG+CNCK CLR DN+IKVRIREIPV DKLQ+L+ LLS+VLP VKQIH  QC+E+EL
Sbjct: 240 CPACRGTCNCKVCLRGDNLIKVRIREIPVQDKLQYLHSLLSSVLPEVKQIHHEQCAELEL 299

Query: 299 EKKLRGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSV 358
           +K+L G  I L R +L+ DEQMCCN CR+PIIDYHRHC NC YDLCL+CCQDLREAS   
Sbjct: 300 DKRLHGASIKLERQRLNNDEQMCCNFCRVPIIDYHRHCMNCSYDLCLNCCQDLREASMLG 359

Query: 359 GKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSL 418
            K E +E       E  SEQVK +KL+LNL +KFP WK N+DGSIPCPP +YGGCG+ SL
Sbjct: 360 TKGEAAEK------ETLSEQVKPTKLKLNLADKFPAWKGNDDGSIPCPPKDYGGCGFSSL 413

Query: 419 NLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCP 478
            L+RIFKMNWVAKLVKNVEEMV+GCKV D  +   T S +   CQ AHRED D NFLYCP
Sbjct: 414 TLTRIFKMNWVAKLVKNVEEMVTGCKVYDINSPQKTRSSNR-FCQSAHREDSDDNFLYCP 472

Query: 479 SSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRI 538
           SS DI++EGIGNFRKHW++GEPVIVKQVCD SS+S WDP  IWRGIRET+DEKTKD+NR 
Sbjct: 473 SSQDIKTEGIGNFRKHWIRGEPVIVKQVCDDSSISNWDPSVIWRGIRETSDEKTKDDNRT 532

Query: 539 VKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFI 598
           VKAIDCLDWSEVDIELG+FIKGYSEGR+R+DGWPEMLKLKDWPSPSASEE LLY +PEFI
Sbjct: 533 VKAIDCLDWSEVDIELGQFIKGYSEGRLRDDGWPEMLKLKDWPSPSASEELLLYQRPEFI 592

Query: 599 SKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPD 658
           SK+PLLEYIHS+ G LNVAAKLPHYSLQNDVGP I++SYGTYEEL  G+SV NLH  M D
Sbjct: 593 SKMPLLEYIHSKWGLLNVAAKLPHYSLQNDVGPNIFISYGTYEELGSGDSVTNLHLEMRD 652

Query: 659 MVYLLVHMGEVKLPTTEDEKIQS---SSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVN 715
           MVYLLVH  EVKL   ++EKI+    +S ESE  ES GD +    EG  PDLSLGGHD  
Sbjct: 653 MVYLLVHTSEVKLKGRQEEKIEKGKEASMESEAKESPGDVQTSLDEGRTPDLSLGGHDQQ 712

Query: 716 NEHVEKSATDEDEIMEDQGVE-TGTAEEKTVKSERLNG-YSDVSEKTHPGAHWDVFRRQD 773
            +H EK   D+DE MEDQG++ T + E KTV  E L+    D+S+ THPGA WDVFRRQD
Sbjct: 713 GDHGEKLNNDKDEEMEDQGIDTTSSVEAKTVNCENLHSDNGDISQITHPGALWDVFRRQD 772

Query: 774 VPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHL 833
           VPKLIEYL+ HW +FG+P   T D V HPLY E ++LN  HK +LKEEFGVEPWSFEQHL
Sbjct: 773 VPKLIEYLQIHWEEFGKPTSATTDSVQHPLYDEAIFLNRHHKTQLKEEFGVEPWSFEQHL 832

Query: 834 GEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVR 893
           G+A+FIPAGCPFQ RNLQSTVQLGLDFL PES+GEAVRLA+EIRCLP +HEAK QVL   
Sbjct: 833 GQAIFIPAGCPFQSRNLQSTVQLGLDFLSPESLGEAVRLADEIRCLPTEHEAKRQVL--- 889

Query: 894 QRKLFQEVGKISLYAASSAIKEVQKLVLDPK 924
                 EVGKISLYAASSAIKEVQKLVLDPK
Sbjct: 890 ------EVGKISLYAASSAIKEVQKLVLDPK 914

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255542696\|ref\|XP_002512411.1\| transcription factor, putative [Ricinus communis] gi\|223548372\|gb\|EEF49863.1\| transcription factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224123112\|ref\|XP_002318998.1\| predicted protein [Populus trichocarpa] gi\|222857374\|gb\|EEE94921.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224123790\|ref\|XP_002330209.1\| predicted protein [Populus trichocarpa] gi\|222871665\|gb\|EEF08796.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356574955\|ref\|XP_003555608.1\| PREDICTED: uncharacterized protein LOC100792166 [Glycine max]	Back alignment and taxonomy information

>gi\|357441701\|ref\|XP_003591128.1\| PsbP-like protein [Medicago truncatula] gi\|355480176\|gb\|AES61379.1\| PsbP-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356535073\|ref\|XP_003536073.1\| PREDICTED: uncharacterized protein LOC100801287 [Glycine max]	Back alignment and taxonomy information

>gi\|449523029\|ref\|XP_004168527.1\| PREDICTED: uncharacterized protein LOC101227379 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449454087\|ref\|XP_004144787.1\| PREDICTED: uncharacterized protein LOC101213201 [Cucumis sativus]	Back alignment and taxonomy information

>gi|30680933|ref|NP_172380.2| WRC, zf-4CXXC-R1 transcription factor and jumonji domain-containing protein [Arabidopsis thaliana] gi|42571415|ref|NP_973798.1| WRC, zf-4CXXC-R1 transcription factor and jumonji domain-containing protein [Arabidopsis thaliana] gi|222423917|dbj|BAH19922.1| AT1G09060 [Arabidopsis thaliana] gi|332190267|gb|AEE28388.1| WRC, zf-4CXXC-R1 transcription factor and jumonji domain-containing protein [Arabidopsis thaliana] gi|332190268|gb|AEE28389.1| WRC, zf-4CXXC-R1 transcription factor and jumonji domain-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		924
TAIR\|locus:2036014		944	AT1G09060 "AT1G09060" [Arabido	0.761	0.745	0.547	1.7e-210
TAIR\|locus:2125221		840	AT4G00990 "AT4G00990" [Arabido	0.662	0.728	0.354	2.1e-141
TAIR\|locus:2008875		875	AT1G11950 "AT1G11950" [Arabido	0.555	0.586	0.370	4.7e-133
TAIR\|locus:2027109		883	AT1G62310 "AT1G62310" [Arabido	0.600	0.628	0.353	4.2e-130
TAIR\|locus:2141221		927	B160 "AT4G21430" [Arabidopsis	0.548	0.546	0.331	2.8e-75
UNIPROTKB\|F1RH75		1766	KDM3B "Uncharacterized protein	0.192	0.100	0.348	8e-41
UNIPROTKB\|Q7LBC6		1761	KDM3B "Lysine-specific demethy	0.194	0.102	0.345	1.6e-40
UNIPROTKB\|E1BE97		1759	LOC100848816 "Uncharacterized	0.194	0.102	0.345	3.3e-40
MGI\|MGI:1923356		1562	Kdm3b "KDM3B lysine (K)-specif	0.194	0.115	0.350	3.9e-39
UNIPROTKB\|F1NJZ2		1755	KDM3B "Uncharacterized protein	0.190	0.100	0.333	9.9e-39

TAIR\|locus:2036014 AT1G09060 "AT1G09060" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2035 (721.4 bits), Expect = 1.7e-210, P = 1.7e-210
 Identities = 406/742 (54%), Positives = 497/742 (66%)

Query:     9 GNGEDNGGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQXXXXXXXXXXXXXXXXXX 68
             GNGE   GIPDDLRCKRSDGKQWRCTAMSM DKTVCEKHYIQ                  
Sbjct:    30 GNGESIPGIPDDLRCKRSDGKQWRCTAMSMADKTVCEKHYIQAKKRAANSAFRANQKKAK 89

Query:    69 XXXX-GESDIYLESKSDDYDMPLVNMK--NNDYPSVSGKK-TLEKV-SKSHFRYSPETPP 123
                  GE+D Y E K DD+++P+ ++   NN   S S     LEK  +KS  RYSPETP 
Sbjct:    90 RRSSLGETDTYSEGKMDDFELPVTSIDHYNNGLASASKSNGRLEKRHNKSLMRYSPETPM 149

Query:   124 TRGMSARNPLKANDDSQRDVAEYEENLRSYKTPPHSG-MDSSRNRSQRSFDPSPTMEYSE 182
              R  S R  +  NDD  RDV  +EE  RSY+TPP    MD +RNRS +S  P   MEYS 
Sbjct:   150 MRSFSPRVAVDLNDDLGRDVVMFEEGYRSYRTPPSVAVMDPTRNRSHQSTSP---MEYSA 206

Query:   183 GSMNSSEDTGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242
              S + S ++ G+ICHQC+R DRER++ C+KC++R +C +C+S  YS+I LEE+EKVCPAC
Sbjct:   207 ASTDVSAESLGEICHQCQRKDRERIISCLKCNQRAFCHNCLSARYSEISLEEVEKVCPAC 266

Query:   243 RGSCNCKACLRADNMIKVRIREIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKL 302
             RG C+CK+CLR+DN IKVRIREIPVLDKLQ+LY LLSAVLPV+KQIH  QC EVELEK+L
Sbjct:   267 RGLCDCKSCLRSDNTIKVRIREIPVLDKLQYLYRLLSAVLPVIKQIHLEQCMEVELEKRL 326

Query:   303 RGNEIDLARAKLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDLREASTSVGKEE 362
             R  EIDL RA+L ADEQMCCN+CRIP++DY+RHC NC YDLCL CCQDLRE S SV    
Sbjct:   327 REVEIDLVRARLKADEQMCCNVCRIPVVDYYRHCPNCSYDLCLRCCQDLREES-SVTISG 385

Query:   363 FSENDRIQDTENASEQVKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYRSLNLSR 422
              ++N  +QD + A       KL+LN   KFP W+AN DGSIPCPP EYGGCG  SLNL+R
Sbjct:   386 TNQN--VQDRKGAP------KLKLNFSYKFPEWEANGDGSIPCPPKEYGGCGSHSLNLAR 437

Query:   423 IFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQYAHREDRDGNFLYCPSSHD 482
             IFKMNWVAKLVKN EE+VSGCK+ D   LLN    D   C++A RE+   N++Y PS   
Sbjct:   438 IFKMNWVAKLVKNAEEIVSGCKLSD---LLNPDMCDSRFCKFAEREESGDNYVYSPSLET 494

Query:   483 IRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAI 542
             I+++G+  F + W +G  V VK V D SS S WDP+ IWR I E +DEK ++ +  +KAI
Sbjct:   495 IKTDGVAKFEQQWAEGRLVTVKMVLDDSSCSRWDPETIWRDIDELSDEKLREHDPFLKAI 554

Query:   543 DCLDWSEVDIELGEFIKGYSEGRVREDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLP 602
             +CLD  EVD+ LGEF + Y +G+ +E G P + KLKDWPSPSASEEF+ Y +PEFI   P
Sbjct:   555 NCLDGLEVDVRLGEFTRAYKDGKNQETGLPLLWKLKDWPSPSASEEFIFYQRPEFIRSFP 614

Query:   603 LLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYL 662
              LEYIH RLG LNVAAKLPHYSLQND GPKIY+S GTY+E+  G+S+  +H+NM DMVYL
Sbjct:   615 FLEYIHPRLGLLNVAAKLPHYSLQNDSGPKIYVSCGTYQEISAGDSLTGIHYNMRDMVYL 674

Query:   663 LVHMGE------VK----LPTTEDEKIQXXXXXXXXXXXXGDPEKVSGEGSFPDLSLGGH 712
             LVH  E      V+    +P   D+K+               PE+   +G   DLSLG  
Sbjct:   675 LVHTSEETTFERVRKTKPVPEEPDQKMSENESLLS-------PEQKLRDGELHDLSLGEA 727

Query:   713 DVNNEHVEKSATDEDEIMEDQG 734
              +     E + T   E + + G
Sbjct:   728 SMEKNEPELALTVNPENLTENG 749

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR\|locus:2125221 AT4G00990 "AT4G00990" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008875 AT1G11950 "AT1G11950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2027109 AT1G62310 "AT1G62310" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141221 B160 "AT4G21430" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RH75 KDM3B "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7LBC6 KDM3B "Lysine-specific demethylase 3B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BE97 LOC100848816 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1923356 Kdm3b "KDM3B lysine (K)-specific demethylase 3B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NJZ2 KDM3B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022742001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (917 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		924
pfam08879		46	pfam08879, WRC, WRC	4e-09
pfam02373		114	pfam02373, JmjC, JmjC domain, hydroxylase	6e-09
pfam10497		105	pfam10497, zf-4CXXC_R1, Zinc-finger domain of mono	1e-07

>gnl\|CDD\|192171 pfam08879, WRC, WRC	Back alignment and domain information

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 18 PDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANS 58
          P+  RC+R+DGK+WRC+   +P K +CE+H  + + R+  S
Sbjct: 2  PEPGRCRRTDGKKWRCSRRVLPGKKLCERHLHRGRSRSRKS 42

The WRC domain, named after the conserved Trp-Arg-Cys motif, contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that the WRC domain functions in DNA binding. Length = 46

>gnl\|CDD\|202224 pfam02373, JmjC, JmjC domain, hydroxylase	Back alignment and domain information

>gnl\|CDD\|220784 pfam10497, zf-4CXXC_R1, Zinc-finger domain of monoamine-oxidase A repressor R1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		924
KOG1356		889	consensus Putative transcription factor 5qNCA, con	100.0
PF10497		105	zf-4CXXC_R1: Zinc-finger domain of monoamine-oxida	99.8
PF08879		46	WRC: WRC; InterPro: IPR014977 WRC is named after t	99.56
PF02373		114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	99.47
PF13621		251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	98.91
smart00558		57	JmjC A domain family that is part of the cupin met	96.98
KOG2131		427	consensus Uncharacterized conserved protein, conta	95.82
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	95.14
cd02339		45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	93.61
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	93.48
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	93.4
PF07883		71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	92.19
COG1917		131	Uncharacterized conserved protein, contains double	92.09
KOG2130		407	consensus Phosphatidylserine-specific receptor Ptd	90.65
cd02344		45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	90.6
PF00569		46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	90.21
COG0662		127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	89.34
cd02341		48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	89.24
smart00291		44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	89.14
cd02345		49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	87.93
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	87.12
cd02337		41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	85.94
TIGR03214		260	ura-cupin putative allantoin catabolism protein. T	85.24
PRK09943		185	DNA-binding transcriptional repressor PuuR; Provis	81.77

>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]	Back alignment and domain information

Probab=100.00  E-value=1.8e-175  Score=1500.39  Aligned_cols=644  Identities=31%  Similarity=0.506  Sum_probs=550.7

Q ss_pred             cCCCCccccccCCCCCeEEcccCCCccccHhHHhhhcCCCChhHhhhcCCCCCCccccccccccCccccccccc----CC
Q 002422          191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIRE----IP  266 (924)
Q Consensus       191 ~~~~~CHQCrqk~~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNCs~Clr~~g~~k~~~~e----~~  266 (924)
                      -.+.+||||.+..+..+-+|+.|+.+ ||.+|++.||+....++++..|++|+..|||..|....++++|.+..    .+
T Consensus       227 g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~  305 (889)
T KOG1356|consen  227 GIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD  305 (889)
T ss_pred             CcchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence            46789999999888889999999965 99999999999989999999999999999999999999999998876    66


Q ss_pred             cccchhhHH--HHHHhhhhhhhhhhhhhhhhhhhhhhhcccccc--ccccccCcccccccCCCccccccccccCCCCCcc
Q 002422          267 VLDKLQHLY--CLLSAVLPVVKQIHQIQCSEVELEKKLRGNEID--LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYD  342 (924)
Q Consensus       267 ~~dKl~~~~--yll~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~i~--i~~a~~~~DERvyCDnCkTSIvD~HRSCp~CsYD  342 (924)
                      ..+++.++.  |+|..++|+|+.++..|..+.+.||+|||....  ...+..+++|++|||+|.|||.|+||+||+|||.
T Consensus       306 ~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~  385 (889)
T KOG1356|consen  306 LSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTSKPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYA  385 (889)
T ss_pred             HHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCCCccccccCcCCCccccccccchhhccccCCCcccc
Confidence            777777887  999999999999999999999999999998533  3556777799999999999999999999999999


Q ss_pred             hhhhhhHHhhhcccCCCCcccc-ccccc--c-cccchhhh--hhhhhhhhccccCCCCcccCCCCCccCCCCCCCCCCCc
Q 002422          343 LCLSCCQDLREASTSVGKEEFS-ENDRI--Q-DTENASEQ--VKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYR  416 (924)
Q Consensus       343 LCLsCC~ELR~g~~~~g~~~~~-~~~~~--~-~~~~~~~~--~~~~~~~~~~~~~~~~W~a~~dGsIpCppke~ggCg~~  416 (924)
                      +||.||++||.|.+....+... +..+.  . +.....+.  ..++..     .. +.  ++++|+|.|-|..++||+..
T Consensus       386 ~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~-----~~-~~--~~~ng~~r~l~~~~~g~~~~  457 (889)
T KOG1356|consen  386 ICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVD-----EP-SS--ANENGSLRDLLLSLAGCLDR  457 (889)
T ss_pred             ccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCC-----CC-cc--cccccchhhcccccCccchh
Confidence            9999999999998876653221 11110  0 00000000  001110     11 12  88999999999999999999


Q ss_pred             ccccccccccchHHHHHHHHHHHHhcCCcccCCCc-cccCCCCccccccccccCCCCCccccCCccccCchhHHHHHHhh
Q 002422          417 SLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETL-LNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHW  495 (924)
Q Consensus       417 ~L~L~~if~~~~i~~L~~~aee~~~~c~~~d~~~~-~~s~~~~~~l~~aA~re~s~dN~lY~P~~~d~~~~~l~hFQ~hW  495 (924)
                      .|.|+||||..|.+.|+.+||.-+...-..-.... ..+....+.++++|.|+.+.|||||||.+.+++.+||.|||+||
T Consensus       458 ~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhW  537 (889)
T KOG1356|consen  458 GLKLKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHW  537 (889)
T ss_pred             hhhhhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHH
Confidence            99999999999999999999998865211111111 11112334578999999999999999999889999999999999


Q ss_pred             hcCCCEEEeccccCCCCCCCChhhhhhhhhhhcccccccccCceEEEecCCCCeeecchhhhccccCCCcccCCCCceee
Q 002422          496 VKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEML  575 (924)
Q Consensus       496 ~kGePVIVr~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aiDCld~~ev~i~i~qFf~Gf~~gr~~~~g~p~mL  575 (924)
                      ++|||||||||++++++++|+||+|||+|++.-..-..-.+.++.++||++      ++.+||.||++|+++++|||+||
T Consensus       538 kqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vL  611 (889)
T KOG1356|consen  538 KQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVL  611 (889)
T ss_pred             hcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEE
Confidence            999999999999999999999999999998765433333445566666666      68999999999999999999999


Q ss_pred             eecCCCCcchhHHhhhhcchHHHhcCCcccccCCCCccchhcccCCCCCCCCCCCCcccccccccccccCCCCcceeeee
Q 002422          576 KLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFN  655 (924)
Q Consensus       576 KLKDWPps~~Fee~lP~h~~eFi~~LP~~EYT~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelGrGDSvTkLH~D  655 (924)
                      |||||||+++|+++||+||+|||++|||||||| |+|.||||++||.+|++||||||||||||+++++||||||||||||
T Consensus       612 KLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~d  690 (889)
T KOG1356|consen  612 KLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLD  690 (889)
T ss_pred             eecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeecee
Confidence            999999999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             ccccceeeeecccccCCCchhhhhhcccccccccccCCCCCccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhcCc
Q 002422          656 MPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGV  735 (924)
Q Consensus       656 mSDAVNIL~ht~ev~~~~~q~~~I~k~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  735 (924)
                      |||||||||||+++++...|...|.|+.++                |++          +.....+              
T Consensus       691 vSDaVNILvyv~e~~~~~~~~~~~~k~~~~----------------~~~----------de~~~~~--------------  730 (889)
T KOG1356|consen  691 VSDAVNILVYVGEPPGQIEQIAKVLKKIQE----------------GDL----------DEITRSR--------------  730 (889)
T ss_pred             hhhhhhheeeeccCCchHHhHHHHHHhhhh----------------cch----------hhhhhhh--------------
Confidence            999999999999998855555444433211                110          0000000              


Q ss_pred             cccccccccccccccCCCCCCCCCCCCceeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCcccCCCcCCceecCHHHH
Q 002422          736 ETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHK  815 (924)
Q Consensus       736 ~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~~hk  815 (924)
                                         .....+.+|||||||||||||||||||+||++||+|.    +.+|+||||||+||||.+||
T Consensus       731 -------------------~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~~----~~~v~hPIhDQS~YLd~~lr  787 (889)
T KOG1356|consen  731 -------------------ISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGHE----VPKVHHPIHDQSWYLDRYLR  787 (889)
T ss_pred             -------------------ccccccCCcchhhhhhhcchHHHHHHHHHhhHHhcCC----CCcccCCCcccceeccHHHH
Confidence                               0124578999999999999999999999999999994    34589999999999999999


Q ss_pred             HHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHhh
Q 002422          816 RKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQR  895 (924)
Q Consensus       816 ~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~le~~~~  895 (924)
                      +|||||||||||||+|+||||||||||||||||||+||||||+||||||||.|||+||+|||+||++|.+++||||    
T Consensus       788 ~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLq----  863 (889)
T KOG1356|consen  788 RRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQ----  863 (889)
T ss_pred             HHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHH----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhcC
Q 002422          896 KLFQEVGKISLYAASSAIKEVQKLVLD  922 (924)
Q Consensus       896 ~~~~~Vkkm~lya~~~avke~~~l~~d  922 (924)
                           ||+|++||+..||++|+.++.+
T Consensus       864 -----vK~mi~hAVk~Av~~L~~~~s~  885 (889)
T KOG1356|consen  864 -----VKNMIYHAVKDAVGTLKEAESS  885 (889)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhcc
Confidence                 9999999999999999987653

>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression	Back alignment and domain information

>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H)	Back alignment and domain information

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []	Back alignment and domain information

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A	Back alignment and domain information

>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily	Back alignment and domain information

>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)	Back alignment and domain information

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	Back alignment and domain information

>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]	Back alignment and domain information

>cd02344 ZZ_HERC2 Zinc finger, ZZ type	Back alignment and domain information

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type	Back alignment and domain information

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein	Back alignment and domain information

>cd02345 ZZ_dah Zinc finger, ZZ type	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>cd02337 ZZ_CBP Zinc finger, ZZ type	Back alignment and domain information

>TIGR03214 ura-cupin putative allantoin catabolism protein	Back alignment and domain information

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		924
2ypd_A		392	Crystal Structure Of The Jumonji Domain Of Human Ju		2e-26

>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji Domain Containing 1c Protein Length = 392

Back alignment and structure

Iteration: 1

Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/404 (26%), Positives = 182/404 (45%), Gaps = 78/404 (19%) Query: 491 FRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEV 550 F++ W +G+P +V V ++S+W + I + D + ++C D Sbjct: 27 FKECWKQGQPAVVSGVHKKMNISLWKAESI---SLDFGDHQAD-------LLNCKDSIIS 76 Query: 551 DIELGEFIKGYSEGRVRE---DGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYI 607 + + EF G+ E R+ G +LKLKDWPS + + + + LPL EY Sbjct: 77 NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136 Query: 608 HSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667 + G N+A+ LP + ++ D+GP++ +YG D NLH + D+V +LV++G Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVG 195 Query: 668 EVKLPTTEDEKIQXXXXXXXXXXXXGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDED 727 K G G LS G + K +ED Sbjct: 196 IAK-----------------------------GNGI---LSKAG-------ILKKFEEED 216 Query: 728 EIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTD 787 ++D + +RL S++ PGA W ++ +DV K+ E+L++ Sbjct: 217 --LDD------------ILRKRLKDSSEI-----PGALWHIYAGKDVDKIREFLQK---- 253 Query: 788 FGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQV 847 + G+ P+ + Y+N +++L EE+GV + Q LG+A+ +PAG QV Sbjct: 254 ISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQV 313 Query: 848 RNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPN--DHEAKLQV 889 +N S +Q+ DF+ PE + E+ L +E+R L +++ KLQV Sbjct: 314 QNFHSCIQVTEDFVSPEHLVESFHLTQELRLLKEEINYDDKLQV 357

PyMOL of 2ypd

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		924
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 82/579 (14%), Positives = 160/579 (27%), Gaps = 173/579 (29%)

Query: 158 HSGMDSSRNRSQ---------------RSFDPSPTMEYSEGSMNSSE-DTGGQICHQCRR 201
           H  MD      Q                +FD     +  +  ++  E D    I      
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDA 60

Query: 202 NDR-ERVVWCVKCDKRG-----YCDSCISTWYSDIPLEELEKVC--PACRGSCNCKACLR 253
                R+ W +   K+      + +  +   Y  + +  ++     P+          + 
Sbjct: 61  VSGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPS----------MM 108

Query: 254 ADNMIKVRIR---EIPVLDKLQHLYCLLSAVLPVVKQIHQIQCSEVELEKKLRGNE---I 307
               I+ R R   +  V  K           +  ++   +++    +   +LR  +   I
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYN---------VSRLQPYLKLR----QALLELRPAKNVLI 155

Query: 308 D---------LARAKLSADEQMCCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLREASTS 357
           D         +A     + +  C    +I    +  +  NC   +  L   Q L      
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKL---LYQ 208

Query: 358 VGKEEFSENDRIQDTENASEQVKTSKLRLNLLEKFPG-------------WKANNDGSIP 404
           +     S +D   + +     ++    RL   + +               W A N     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN----- 263

Query: 405 CPPNEYGGCGYRSLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETLLNTGSYDHSLCQY 464
                   C  + L  +R           K V + +S              S DH     
Sbjct: 264 ------LSC--KILLTTR----------FKQVTDFLSAATTTHI-------SLDHHSMTL 298

Query: 465 AHREDRD--GNFLYCPSSHDIRSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWR 522
              E +     +L C    D+  E         +   P  +  +    + SI D    W 
Sbjct: 299 TPDEVKSLLLKYLDCRPQ-DLPREV--------LTTNPRRLSII----AESIRDGLATWD 345

Query: 523 GIRETADEKTKDENRIVKA-IDCLDWSEVD---IELGEFIKGYSEGRVREDGW-PEMLKL 577
             +    +K      I+++ ++ L+ +E       L  F               P +L  
Sbjct: 346 NWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSVF---------PPSAHIPTILLS 393

Query: 578 KDWPSPSASEEFLLYHKPEFISKLPLLE--------YIHSRLGFLNVAAKLPH-YSLQND 628
             W     S+  ++ +  +      L+E         I S   +L +  KL + Y+L   
Sbjct: 394 LIWFDVIKSDVMVVVN--KLHKYS-LVEKQPKESTISIPSI--YLELKVKLENEYALHR- 447

Query: 629 VGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667
               I   Y   +  D  + +           Y   H+G
Sbjct: 448 ---SIVDHYNIPKTFDSDDLIPPYLDQ-----YFYSHIG 478

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		924
2ypd_A		392	Probable JMJC domain-containing histone demethyla	100.0
4gjz_A		235	Lysine-specific demethylase 8; JMJC, beta barrel,	99.18
3k2o_A		336	Bifunctional arginine demethylase and lysyl-hydro	99.15
2yu1_A		451	JMJC domain-containing histone demethylation PROT;	99.0
3kv4_A		447	PHD finger protein 8; epigenetics, histone CODE, c	98.99
3k3o_A		371	PHF8, PHD finger protein 8; histone demethylase, c	98.99
3kv5_D		488	JMJC domain-containing histone demethylation prote	98.94
3kv9_A		397	JMJC domain-containing histone demethylation prote	98.92
3pua_A		392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	98.9
3al5_A		338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	98.83
3d8c_A		349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	98.73
3pur_A		528	Lysine-specific demethylase 7 homolog; oxidoreduct	98.17
3avr_A		531	Lysine-specific demethylase 6A; cupin superfamily,	97.67
2xxz_A		332	Lysine-specific demethylase 6B; oxidoreductase, hi	97.53
4ask_A		510	Lysine-specific demethylase 6B; oxidoreductase, KD	97.51
3dxt_A		354	JMJC domain-containing histone demethylation PROT;	96.03
3opt_A		373	DNA damage-responsive transcriptional repressor R;	95.49
2ox0_A		381	JMJC domain-containing histone demethylation PROT;	94.65
1vrb_A		342	Putative asparaginyl hydroxylase; 2636534, structu	93.78
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	91.13
1yhf_A		115	Hypothetical protein SPY1581; structural genomics,	90.87
2opk_A		112	Hypothetical protein; putative mannose-6-phosphate	90.86
2pfw_A		116	Cupin 2, conserved barrel domain protein; cupin do	90.51
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	90.46
3ht1_A		145	REMF protein; cupin fold, Zn-binding, antibiotic b	90.11
3fjs_A		114	Uncharacterized protein with RMLC-like cupin fold;	89.94
2q30_A		110	Uncharacterized protein; double-stranded beta-heli	89.88
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	89.76
3lag_A		98	Uncharacterized protein RPA4178; functionally unkn	89.61
3h8u_A		125	Uncharacterized conserved protein with double-STR	89.59
1v70_A		105	Probable antibiotics synthesis protein; structural	89.32
4e2g_A		126	Cupin 2 conserved barrel domain protein; MCSG, PSI	89.04
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	88.39
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	88.1
2xlg_A		239	SLL1785 protein, CUCA; metal binding protein, cupi	88.06
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	88.02
2ozj_A		114	Cupin 2, conserved barrel; cupin superfamily prote	88.01
2b8m_A		117	Hypothetical protein MJ0764; structural genomics,	87.87
1juh_A		350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	87.83
3ibm_A		167	Cupin 2, conserved barrel domain protein; cupin 2	87.69
2gu9_A		113	Tetracenomycin polyketide synthesis protein; X-RAY	87.67
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	87.67
2fqp_A		97	Hypothetical protein BP2299; double-stranded beta-	87.58
3d82_A		102	Cupin 2, conserved barrel domain protein; structur	87.24
1o5u_A		101	Novel thermotoga maritima enzyme TM1112; cupin, st	86.98
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	86.79
3kgz_A		156	Cupin 2 conserved barrel domain protein; metallopr	86.66
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	86.5
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	86.01
3h7j_A		243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	85.94
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	85.56
2fc7_A		82	ZZZ3 protein; structure genomics, ZZ domain, struc	85.23
2dip_A		98	Zinc finger SWIM domain-containing protein 2; ZZ d	85.22
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	84.62
1y9q_A		192	Transcriptional regulator, HTH_3 family; transcrip	84.43
2ozi_A		98	Hypothetical protein RPA4178; APC6210, putative pr	84.28
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	84.2
1tot_A		52	CREB-binding protein; zinc binding, CBP, TAZ2, tra	84.07
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	84.02
2e5r_A		63	Dystrobrevin alpha; ZZ domain, structural genomics	84.01
1lr5_A		163	Auxin binding protein 1; beta jellyroll, double st	83.96
3cew_A		125	Uncharacterized cupin protein; all beta-protein, j	83.66
2i45_A		107	Hypothetical protein; neisseria meningitidis cupin	83.42
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	83.35
3l2h_A		162	Putative sugar phosphate isomerase; AFE_0303, stru	83.03
2ect_A		78	Ring finger protein 126; metal binding protein, st	83.01
2oa2_A		148	BH2720 protein; 10175341, structural genomics, joi	82.84
3jzv_A		166	Uncharacterized protein RRU_A2000; structural geno	82.48
4axo_A		151	EUTQ, ethanolamine utilization protein; structural	81.06
1vj2_A		126	Novel manganese-containing cupin TM1459; structura	80.95
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	80.81
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	80.79
2o8q_A		134	Hypothetical protein; cpuin-like fold, structural	80.56
4h7l_A		157	Uncharacterized protein; structural genomics, PSI-	80.56
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	80.55
1x82_A		190	Glucose-6-phosphate isomerase; cupin superfamily,	80.4

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.5e-129  Score=1062.83  Aligned_cols=353  Identities=27%  Similarity=0.461  Sum_probs=272.9

Q ss_pred             CchhHHHHHHhhhcCCCEEEeccccCCCCCCCChhhhhhhhhhhcccccccccCceEEEecCCCCeeecchhhhccccCC
Q 002422          484 RSEGIGNFRKHWVKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSE  563 (924)
Q Consensus       484 ~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~~e~~~v~aiDCld~~ev~i~i~qFf~Gf~~  563 (924)
                      +.+|+.|||+||++|||||||||++++++++|+|++||++|++          ..+++|||++|++++|++++||+||++
T Consensus        20 ~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~gd----------~~~~lidC~~~~~~~i~v~~Ff~Gf~~   89 (392)
T 2ypd_A           20 NSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFGD----------HQADLLNCKDSIISNANVKEFWDGFEE   89 (392)
T ss_dssp             CTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHTT----------SCCCCEETTTCCBCSCCHHHHHHTSSB
T ss_pred             CcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhcC----------ceeeeeeCCCCccccCcHHHHhhhccc
Confidence            4568999999999999999999999999999999999998753          236789999999999999999999999


Q ss_pred             Cccc---CCCCceeeeecCCCCcchhHHhhhhcchHHHhcCCcccccCCCCccchhcccCCCCCCCCCCCCccccccccc
Q 002422          564 GRVR---EDGWPEMLKLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTY  640 (924)
Q Consensus       564 gr~~---~~g~p~mLKLKDWPps~~Fee~lP~h~~eFi~~LP~~EYT~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~  640 (924)
                      ++.+   ++|||+|||||||||+++|+|+||+||+|||++||||||||| +|+|||||+||+++++||||||||||||++
T Consensus        90 ~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p-~G~LNLAs~LP~~~~kPDLGPK~YiAYG~~  168 (392)
T 2ypd_A           90 VSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNP-EGKFNLASHLPGFFVRPDLGPRLCSAYGVV  168 (392)
T ss_dssp             GGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHST-TCTTCCTTTSCGGGCC---CCEEEEECCST
T ss_pred             cccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCC-CccchHHHhCCCCCCCCCCCcchhhhcCcc
Confidence            8754   699999999999999999999999999999999999999998 599999999999999999999999999999


Q ss_pred             ccccCCCCcceeeeeccccceeeeecccccCCCchhhhhhcccccccccccCCCCCccCCCCCCCCCCCCCCCCCchhhc
Q 002422          641 EELDRGNSVKNLHFNMPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVE  720 (924)
Q Consensus       641 eelGrGDSvTkLH~DmSDAVNIL~ht~ev~~~~~q~~~I~k~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~  720 (924)
                      +++|+|+|||||||||||||||||||++++....... .+.+              +.+++++          .+....+
T Consensus       169 ~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~~~~-~~~l--------------~~~~~~~----------~d~~~~~  223 (392)
T 2ypd_A          169 AAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSK-AGIL--------------KKFEEED----------LDDILRK  223 (392)
T ss_dssp             TTTCTTCCSEEEEECSSEEEEEEEEEECCBCTTCCCH-HHHH--------------HHHHTSC----------CCHHHHH
T ss_pred             hhcccCCCcceeeeehhhhhhhhheecccCccccchh-hhhh--------------hhhhhcc----------ccHHHhh
Confidence            9999999999999999999999999998765433211 0000              0111111          0111111


Q ss_pred             ccccchhhhhhhcCccccccccccccccccCCCCCCCCCCCCceeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCccc
Q 002422          721 KSATDEDEIMEDQGVETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVT  800 (924)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~  800 (924)
                      ++                                 .+..+.+||+||||||||++|||+||++|++||+.+.    ..+.
T Consensus       224 r~---------------------------------~~~~~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~~~~----~~~~  266 (392)
T 2ypd_A          224 RL---------------------------------KDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEV----LPEH  266 (392)
T ss_dssp             HH---------------------------------TCTTCCEEEEEEEECGGGHHHHHHHHHHHHHHHC----------C
T ss_pred             hc---------------------------------cCCCCCCCceeeeeCHhhHHHHHHHHHHHHHhhCCCc----cCCC
Confidence            10                                 1345689999999999999999999999999997653    3478


Q ss_pred             CCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHHHHHHHhcCC
Q 002422          801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLP  880 (924)
Q Consensus       801 hPIHDQ~fYLt~~hk~kLkEEyGVepWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp  880 (924)
                      ||||||+||||++||++|+|||||+||||+|++|||||||||||||||||+||||||+||||||||.+|++||+|||+||
T Consensus       267 dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~  346 (392)
T 2ypd_A          267 DPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLLK  346 (392)
T ss_dssp             CHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEEESSEEEEEEEEECCGGGHHHHHHHHHHC----
T ss_pred             CcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHhcccchhhHhhhhcChhhHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 002422          881 NDHEAKLQVLEVRQRKLFQEVGKISLYAASSAIKEVQKL  919 (924)
Q Consensus       881 ~~H~aK~d~le~~~~~~~~~Vkkm~lya~~~avke~~~l  919 (924)
                       +|.+|+||||         ||+|++||+..||++|++.
T Consensus       347 -~~~~~edkLq---------vk~m~~~av~~av~~l~~~  375 (392)
T 2ypd_A          347 -EEINYDDKLQ---------VKNILYHAVKEMVRALKIH  375 (392)
T ss_dssp             ---------------------------------------
T ss_pred             -hhhhhHHHHH---------HHHHHHHHHHHHHHHHHhh
Confidence             6999999999         9999999999999999864

PyMOL of 2ypd

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*	Back alignment and structure

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*	Back alignment and structure

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A	Back alignment and structure

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}	Back alignment and structure

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*	Back alignment and structure

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*	Back alignment and structure

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*	Back alignment and structure

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*	Back alignment and structure

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*	Back alignment and structure

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...	Back alignment and structure

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*	Back alignment and structure

>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*	Back alignment and structure

>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}	Back alignment and structure

>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*	Back alignment and structure

>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*	Back alignment and structure

>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*	Back alignment and structure

>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*	Back alignment and structure

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9	Back alignment and structure

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}	Back alignment and structure

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A	Back alignment and structure

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}	Back alignment and structure

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}	Back alignment and structure

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A	Back alignment and structure

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}	Back alignment and structure

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18	Back alignment and structure

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*	Back alignment and structure

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}	Back alignment and structure

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}	Back alignment and structure

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}	Back alignment and structure

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*	Back alignment and structure

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}	Back alignment and structure

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}	Back alignment and structure

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}	Back alignment and structure

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}	Back alignment and structure

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}	Back alignment and structure

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		924
d1v5na_		89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	0.002

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89	Back information, alignment and structure


class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 313 KLSADEQMCCNICRIPIIDYHRHCGNCMYDLCLSC 347
           +L+  +   C+ C      +  HC  C +DL   C
Sbjct: 41  ELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKC 75

PyMOL of d1v5na_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		924
d1h2ka_		335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	98.96
d1vrba1		319	Putative asparaginyl hydroxylase YxbC {Bacillus su	98.55
d1v70a_		105	Hypothetical protein TTHA0104 {Thermus thermophilu	93.54
d1vj2a_		114	Hypothetical protein TM1459 {Thermotoga maritima [	93.29
d2b8ma1		108	Hypothetical protein MJ0764 {Archaeon Methanococcu	92.47
d1yhfa1		112	Hypothetical protein SPy1581 {Streptococcus pyogen	91.67
d1rc6a_		253	Hypothetical protein YlbA {Escherichia coli [TaxId	89.88
d1lr5a_		160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	88.59
d2dipa1		85	Zinc finger ZZ-type-containing protein 2 {Human (H	88.35
d2fc7a1		69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	88.35
d1o4ta_		115	Hypothetical protein TM1287 {Thermotoga maritima [	88.21
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	88.02
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	87.96
d1sefa_		250	Hypothetical protein EF2996 {Enterococcus faecalis	86.18
d1mm2a_		61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.39
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	85.25
d2bnma2		122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	84.31
d1sfna_		245	Hypothetical protein DR1152 {Deinococcus radiodura	81.35
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	80.6

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2e-10  Score=121.10  Aligned_cols=38  Identities=16%  Similarity=0.317  Sum_probs=34.8

Q ss_pred             CccceEEEeecCceEEecCCCccccccccc-cceeeccc
Q 002422          823 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQS-TVQLGLDF  860 (924)
Q Consensus       823 GVepWtf~Q~lGEAVFIPAGCPHQVRNLkS-CIKVAlDF  860 (924)
                      ++.+|.+++.+||++|||+|..|||+||.+ +|.|++.|
T Consensus       243 ~~~~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~  281 (335)
T d1h2ka_         243 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNF  281 (335)
T ss_dssp             GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEE
T ss_pred             cCCceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEe
Confidence            457999999999999999999999999965 89999987

PyMOL of d1h2ka_

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}	Back information, alignment and structure

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure