BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002424
(924 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1U4|APC5_ARATH Anaphase-promoting complex subunit 5 OS=Arabidopsis thaliana
GN=APC5 PE=2 SV=1
Length = 916
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 616/912 (67%), Positives = 740/912 (81%), Gaps = 7/912 (0%)
Query: 1 MAGILKPPGAFAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCE 60
MAG+ + GAFAVTPHK+SVCIL+Q+YAP A MS+PFPFSSVAQHNR GLYL +LTKSC+
Sbjct: 1 MAGLTRTAGAFAVTPHKISVCILLQIYAPSAQMSLPFPFSSVAQHNRLGLYLLSLTKSCD 60
Query: 61 DILEPKLDELINQLREIGDVLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSA 120
DI EPKL++LINQLRE+G+ + WLTD L +R SSL+SPDDL N F+D+R ILG D
Sbjct: 61 DIFEPKLEKLINQLREVGEEMDAWLTDHLTNRFSSLASPDDLLNFFNDMRGILGSLDSGV 120
Query: 121 VDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKEALSSCSAYELPCLD 180
V D+Q++LDPNSNLGMFVRRC+LAFNLL FEGVCHL +SI YCKEA SS + + P
Sbjct: 121 VQDDQIILDPNSNLGMFVRRCILAFNLLSFEGVCHLFSSIEDYCKEAHSSFAQFGAP--- 177
Query: 181 DSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVSA 240
+N LE+L +Y+ MD+EN +K +EIE +K AS V FHLH P +L E + +
Sbjct: 178 --NNNLESLIQYDQMDMENYAMDKPTEEIEFQKTASGIVPFHLHTPDSLMKATEGLLHNR 235
Query: 241 VSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFS 300
S+ K EA+P A A + E FLRTN Q+QG+LMEQADAIE HGSS S
Sbjct: 236 KETSRTSKKDTEATPVARASTSTLEESLVDESLFLRTNLQIQGFLMEQADAIEIHGSSSS 295
Query: 301 LNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFA 358
++ + L QLQKLAPELHRVHFLRYLN L+ DDYFAAL+NL RYFDYSAGTEGFD
Sbjct: 296 FSSSSIESFLDQLQKLAPELHRVHFLRYLNKLHSDDYFAALDNLLRYFDYSAGTEGFDLV 355
Query: 359 QPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAIS 418
PS GC+ +GRYEI LLCLGMMHF FGHP AL+VLTEAV +SQQ SNDTCLAYTLAA+S
Sbjct: 356 PPSTGCSMYGRYEIGLLCLGMMHFRFGHPNLALEVLTEAVRVSQQLSNDTCLAYTLAAMS 415
Query: 419 NLLSEIGISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHL 478
NLLSE+GI++T+G+LGSSYSP+TS ++LSVQQ++++LLKES RRA+SLKL+RLVA+NHL
Sbjct: 416 NLLSEMGIASTSGVLGSSYSPVTSTASSLSVQQRVYILLKESLRRADSLKLRRLVASNHL 475
Query: 479 AMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLISDFVSESSTMTTDGAFS 538
AMAKF+L HVQRPLLSFGPK +MR +TCP +VCKE+RL +HLISDF SESSTMT DG+ S
Sbjct: 476 AMAKFELMHVQRPLLSFGPKASMRHKTCPVSVCKEIRLGAHLISDFSSESSTMTIDGSLS 535
Query: 539 TSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAY 598
++WLK+LQKP G V++ ++ S K S FQ C SIPGSV QL+G+SYLLRAT+WE Y
Sbjct: 536 SAWLKDLQKPWGPPVISPDSGSRKSSTFFQLCDHLVSIPGSVSQLIGASYLLRATSWELY 595
Query: 599 GSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV 658
GSAP+ R+NTL+YAT F D SS SDA LA++KLIQHLA++KGYK+AF+ALK+AEEKFL+V
Sbjct: 596 GSAPMARMNTLVYATLFGDSSSSSDAELAYLKLIQHLALYKGYKDAFAALKVAEEKFLTV 655
Query: 659 SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718
SKS++LLLKLQLLHER+LH G+LKLAQ++C+ELG +AS+ GVDM+LK EASLR ARTLL
Sbjct: 656 SKSKVLLLKLQLLHERALHCGNLKLAQRICNELGGLASTAMGVDMELKVEASLREARTLL 715
Query: 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778
AA Q+S+AA VAHSLFC C+KFNLQ+E ASVLLLLAEIHKKSGNAVLG+PYALAS+SFCQ
Sbjct: 716 AAKQYSQAANVAHSLFCTCHKFNLQIEKASVLLLLAEIHKKSGNAVLGLPYALASISFCQ 775
Query: 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838
NLDLLKASATLTLAELWL G NH K A +L+ A P+ILGHGGLELRARA+I EA C
Sbjct: 776 SFNLDLLKASATLTLAELWLGLGSNHTKRALDLLHGAFPMILGHGGLELRARAYIFEANC 835
Query: 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898
LSDPS SVS + + VLD LRQAS+ELQ LE HELAAEA YL+A+V+DKLGRL EREEAA
Sbjct: 836 YLSDPSSSVSTDSDTVLDSLRQASDELQALEYHELAAEASYLMAMVYDKLGRLDEREEAA 895
Query: 899 ALFKEYVLALEN 910
+LFK++++ALEN
Sbjct: 896 SLFKKHIIALEN 907
>sp|Q5RE52|APC5_PONAB Anaphase-promoting complex subunit 5 OS=Pongo abelii GN=ANAPC5 PE=2
SV=1
Length = 755
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 41/374 (10%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP------- 602
++ Q +GK +N + S + S+ +L+ S + W YG +
Sbjct: 384 LVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 443
Query: 603 -LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLS 657
L +N+L ++ A+A + HLA + F+A LK +E+F
Sbjct: 444 MLLSMNSLEAVNAGVQQNNTESFAVA----LCHLAELHAEQGCFAAASEVLKHLKERFPP 499
Query: 658 VSKSRILLL----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713
S+ L + K+Q +R+++ G LA S VTG+ E R
Sbjct: 500 NSQHAQLWMLCDQKIQF--DRAMNDGKYHLAD----------SLVTGITALNSIEGVYRK 547
Query: 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
A L A NQ SEA + L C K SVLL +AE++ +S + + +P L +
Sbjct: 548 AVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQA 607
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833
L+ + L L + L LA L G + A +L+ A+ IL G + + RA
Sbjct: 608 LALSKEYRLQYLASETVLNLAFAQLILGI--PEQALSLLHMAIEPILADGAILDKGRAMF 665
Query: 834 AEAKC-LLSDPSFSVSQNPEAV---LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889
AKC + S S+ + EA+ ++ L +A ++ E + Y A ++ LG
Sbjct: 666 LVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLG 725
Query: 890 RLAEREEAAALFKE 903
+ ER A LF++
Sbjct: 726 KTQERNRCAMLFRQ 739
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 122/319 (38%), Gaps = 84/319 (26%)
Query: 101 DLFNLFSDLRAILGGTDLSAVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSI 160
D+ F DL GT+ + S +G+F+R +LA++ L F V L T++
Sbjct: 107 DMEQFFDDLSDSFSGTEPE--------VHKTSVVGLFLRHMILAYSKLSFSQVFKLYTAL 158
Query: 161 GIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVS 220
Y + E ++D+ EL + E E RK EE+
Sbjct: 159 QQYFQNG-------EKKTVEDADMELTSRDEGE------------------RKMEKEEL- 192
Query: 221 FHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQ 280
D+ V RE S P + Q
Sbjct: 193 --------------DVSV------------REEEVSCSGP---------------LSQKQ 211
Query: 281 MQGYLMEQADAIEKHGS-SFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAAL 339
+ +L +QA ++ + + + + + L L K P+ H+L YLN+L D F++
Sbjct: 212 AEFFLSQQASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSST 271
Query: 340 ENLHRYFD--YSAGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTE 396
+L YFD G E S G +GR A L L +H FGH +QA L E
Sbjct: 272 HSLLHYFDRLILTGAES-----KSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQE 326
Query: 397 AVCLSQQHSNDTCLAYTLA 415
A+ ++Q+ ++ CL + L+
Sbjct: 327 AIRIAQESNDHVCLQHCLS 345
>sp|Q9UJX4|APC5_HUMAN Anaphase-promoting complex subunit 5 OS=Homo sapiens GN=ANAPC5 PE=1
SV=2
Length = 755
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 41/374 (10%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP------- 602
++ Q +GK +N + S + S+ +L+ S + W YG +
Sbjct: 384 LVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 443
Query: 603 -LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLS 657
L +N+L ++ A+A + HLA + F+A LK +E+F
Sbjct: 444 MLLSMNSLEAVNAGVQQNNTESFAVA----LCHLAELHAEQGCFAAASEVLKHLKERFPP 499
Query: 658 VSKSRILLL----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713
S+ L + K+Q +R+++ G LA S VTG+ E R
Sbjct: 500 NSQHAQLWMLCDQKIQF--DRAMNDGKYHLAD----------SLVTGITALNSIEGVYRK 547
Query: 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
A L A NQ SEA + L C K SVLL +AE++ +S + + +P L +
Sbjct: 548 AVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQA 607
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833
L+ + L L + L LA L G + A +L+ A+ IL G + + RA
Sbjct: 608 LALSKEYRLQYLASETVLNLAFAQLILGI--PEQALSLLHMAIEPILADGAILDKGRAMF 665
Query: 834 AEAKC-LLSDPSFSVSQNPEAV---LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889
AKC + S S+ + EA+ ++ L +A ++ E + Y A ++ LG
Sbjct: 666 LVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLG 725
Query: 890 RLAEREEAAALFKE 903
+ ER A LF++
Sbjct: 726 KTQERNRCAMLFRQ 739
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 122/319 (38%), Gaps = 84/319 (26%)
Query: 101 DLFNLFSDLRAILGGTDLSAVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSI 160
D+ F DL GT+ + S +G+F+R +LA++ L F V L T++
Sbjct: 107 DMEQFFDDLSDSFSGTEPE--------VHKTSVVGLFLRHMILAYSKLSFSQVFKLYTAL 158
Query: 161 GIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVS 220
Y + E ++D+ EL + E E RK EE+
Sbjct: 159 QQYFQNG-------EKKTVEDADMELTSRDEGE------------------RKMEKEEL- 192
Query: 221 FHLHAPKALFGLVEDIKVSAVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQ 280
D+ V RE S P + Q
Sbjct: 193 --------------DVSV------------REEEVSCSGP---------------LSQKQ 211
Query: 281 MQGYLMEQADAIEKHGS-SFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAAL 339
+ +L +QA ++ + + + + + L L K P+ H+L YLN+L D F++
Sbjct: 212 AEFFLSQQASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSST 271
Query: 340 ENLHRYFD--YSAGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTE 396
+L YFD G E S G +GR A L L +H FGH +QA L E
Sbjct: 272 HSLLHYFDRLILTGAES-----KSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQE 326
Query: 397 AVCLSQQHSNDTCLAYTLA 415
A+ ++Q+ ++ CL + L+
Sbjct: 327 AIRIAQESNDHVCLQHCLS 345
>sp|A1L1K3|APC5_RAT Anaphase-promoting complex subunit 5 OS=Rattus norvegicus GN=Anapc5
PE=2 SV=1
Length = 727
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 102/401 (25%), Positives = 163/401 (40%), Gaps = 56/401 (13%)
Query: 540 SWLKNL-QKPMGSLVLTQENV------------SGKDSNAFQFCAQPSSI---PGSVLQL 583
SWL L QK S VL + +V +GK +N + S + S+ +L
Sbjct: 330 SWLYVLGQKRADSYVLLEHSVKKAVHFGLPRAFAGKTANKLMDALKDSDLLHWKHSLSEL 389
Query: 584 VGSSYLLRATAWEAYGSAP--------LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHL 635
+ S + W YG + L +N+L S G ++ V L HL
Sbjct: 390 IDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSL---ESLSAGVQQNNTESFAVALC-HL 445
Query: 636 AVFKGYKEAFSA----LKIAEEKFLSVSKSRILLL----KLQLLHERSLHRGHLKLAQKV 687
A + F+A LK +E+F S+ L + K+Q +R+++ G LA
Sbjct: 446 AELHAEQGCFAAAGEVLKHLKERFPPNSQHAQLWMLCDQKIQF--DRAMNDGKFHLAD-- 501
Query: 688 CDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747
S VTG+ E R A L A NQ +EA + L C K
Sbjct: 502 --------SLVTGITALNGIEGVYRKAVVLQAQNQMTEAHKLLQKLLTYCQKLKNTEMVI 553
Query: 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKM 807
SVLL +AE++ +S + + +P L +L+ + L L + L LA L G +
Sbjct: 554 SVLLSVAELYWRSSSPTIAMPVLLEALALSKEYRLQYLASETVLNLAYAQLILGI--PEQ 611
Query: 808 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLS-----DPSFSVSQNPEAVLDPLRQAS 862
A L+ A+ IL G + + RA +KC ++ DP ++ EA + L +A
Sbjct: 612 ALTLLHMAIEPILADGAILDKGRAMFLVSKCQVASAASYDP-VKKAEALEAAIQNLTEAK 670
Query: 863 EELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903
++ E + Y A ++ LG+ ER A +F++
Sbjct: 671 NYFAKVDCRERIRDVSYFQARLYHALGKTQERNHCAMVFRQ 711
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 89/207 (42%), Gaps = 44/207 (21%)
Query: 308 LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFD--YSAGTEGFDFAQPSIGCN 365
L L K P+ H+L YLN+L D F++ +L YFD G EG S G
Sbjct: 225 LNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEG-----KSNGEE 279
Query: 366 SFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEI 424
+GR A L L +H FGH +QA L EA+ ++Q+ ++ CL + L+ +
Sbjct: 280 GYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLY------ 333
Query: 425 GISTTTGILGSSYSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVA---ANHL--A 479
+LG + +VLL+ S ++A L R A AN L A
Sbjct: 334 -------VLGQKRADS-------------YVLLEHSVKKAVHFGLPRAFAGKTANKLMDA 373
Query: 480 MAKFDLTHVQRPL-----LSFGPKTAM 501
+ DL H + L +S KTA+
Sbjct: 374 LKDSDLLHWKHSLSELIDISIAQKTAI 400
>sp|Q5ZKK3|APC5_CHICK Anaphase-promoting complex subunit 5 OS=Gallus gallus GN=ANAPC5
PE=2 SV=1
Length = 756
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 153/368 (41%), Gaps = 29/368 (7%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYG--SAPLTRVN 607
++ Q +GK +N + S + S+ +L+ S + W YG + L +
Sbjct: 384 LVQQRAFAGKAANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 443
Query: 608 TLIYATCFS--DGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLSVSKS 661
TL+ + + A ++ HLA + F+A LK +E+F S+
Sbjct: 444 TLLSMNSLEAVNVGVQQNNTEAFAVVLCHLAELHAEQGYFAAASEILKHLKERFPPNSQH 503
Query: 662 RIL--LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 719
L L ++ ER+++ G +A S V G+ E R A L A
Sbjct: 504 AQLWMLFDQKIQFERAMNDGRYHIAD----------SLVAGITALNSIEGMYRKAIVLKA 553
Query: 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779
NQ EA + L C + SVLL +AE++ +S + +P L +L+F +
Sbjct: 554 QNQMLEAHKLLQKLLIHCQEIKNTEIVISVLLSVAELYWRSSCHTIALPVLLQALAFSRE 613
Query: 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC- 838
+L L + L LA L G + N++ A+ L HG + + A AKC
Sbjct: 614 YSLQYLASETVLNLAFSQLILGV--PEQVLNILHMAIEPGLAHGAVLDKGCAMFLVAKCQ 671
Query: 839 LLSDPSFSVSQNPEAV---LDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAERE 895
+ S S+S + EA+ + L +A L ++ E + Y A +F LG+ ER
Sbjct: 672 VASTASYSQQKKAEALESAILNLNEAKTYLAKVDCKEQLRDVLYFQARLFHTLGKTQERN 731
Query: 896 EAAALFKE 903
+ A LF++
Sbjct: 732 KCAMLFRQ 739
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 284 YLMEQADAIEKHGSSFSLNAFELI--LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALEN 341
Y + Q ++ K+ + +L+ L L L K P+ H+L YLNSL D F++ +
Sbjct: 214 YFLSQQASLLKNDETKALSPVSLQKELNNLLKFNPDFAEAHYLSYLNSLRVHDVFSSTHS 273
Query: 342 LHRYFD--YSAGTEGFDFAQPSIGCNSFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAV 398
L YFD G E S G +GR A L L +H FGH +QA L EA+
Sbjct: 274 LLHYFDRLILTGAES-----KSNGDEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAI 328
Query: 399 CLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSP--------ITSIGTTLSVQ 450
++Q+ ++ CL + L+ + +SE I + +L S + + S+G VQ
Sbjct: 329 RIAQESNDHVCLQHCLSWLH--ISEQKIFDSCVLLEHSVNKSLHFGLPYLASLGIQSLVQ 386
Query: 451 QQLF 454
Q+ F
Sbjct: 387 QRAF 390
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 101 DLFNLFSDLRAILGGTDLSAVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSI 160
D+ F DL GT+ + S +G+F+R +LA+N L F V L T++
Sbjct: 106 DMEQFFDDLSDSFSGTEPE--------VHKTSVIGLFLRHMILAYNKLSFSQVYKLYTAL 157
Query: 161 GIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDL 197
Y C E ++ EL+ E E +D+
Sbjct: 158 QQYFLNDEKKCGIDENDMELTNTEELDGKMEKEELDV 194
>sp|Q8BTZ4|APC5_MOUSE Anaphase-promoting complex subunit 5 OS=Mus musculus GN=Anapc5 PE=2
SV=1
Length = 740
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 154/375 (41%), Gaps = 43/375 (11%)
Query: 553 VLTQENVSGKDSNAFQFCAQPSSI---PGSVLQLVGSSYLLRATAWEAYGSAP------- 602
++ Q +GK +N + S + S+ +L+ S + W YG +
Sbjct: 369 LVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQ 428
Query: 603 -LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSA----LKIAEEKFLS 657
L +N+L ++ A+A + HLA + F+A LK +++F
Sbjct: 429 MLLSMNSLESLNAGVQQNNTESFAVA----LCHLAELHAEQGCFAAAGEVLKHLKDRFPP 484
Query: 658 VSKSRILLL----KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713
S+ L + K+Q +R+++ G LA S VTG+ E R
Sbjct: 485 NSQHAQLWMLCDQKIQF--DRAMNDGKFHLAD----------SLVTGITALNGIEGVYRK 532
Query: 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
A L A NQ +EA + L C K SVLL +AE++ +S + + +P L +
Sbjct: 533 AVVLQAQNQMTEAHKLLQKLLTYCQKLKNTEMVISVLLSVAELYWRSSSPTIAMPVLLEA 592
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833
L+ + L L + L LA L G + A L+ A+ IL G + + RA
Sbjct: 593 LALSKEYRLQYLASETVLNLAYAQLILGI--PEQALTLLHMAIEPILADGAVLDKGRAMF 650
Query: 834 AEAKCLLS-----DPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888
+KC ++ DP ++ EA + L +A ++ E + Y A ++ L
Sbjct: 651 LVSKCQVASAASYDP-VKKAEALEAAIQNLSEAKNYFAQVDCRERIRDVAYFQARLYHAL 709
Query: 889 GRLAEREEAAALFKE 903
G+ ER A +F++
Sbjct: 710 GKTQERNHCAMIFRQ 724
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 308 LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFD--YSAGTEGFDFAQPSIGCN 365
L L K P+ H+L YLN+L D F++ +L YFD G EG S G
Sbjct: 225 LNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAEG-----KSNGEE 279
Query: 366 SFGR-YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLA 415
+GR A L L +H FGH +QA L EA+ ++Q+ ++ CL + L+
Sbjct: 280 GYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLS 330
>sp|Q54VV5|APC5_DICDI Anaphase-promoting complex subunit 5 OS=Dictyostelium discoideum
GN=anapc5 PE=3 SV=1
Length = 1017
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 45/212 (21%)
Query: 308 LRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAG----------TEGFDF 357
+ +L+ P + RVH + L ++ + DY +LE+LHRYFDY G F F
Sbjct: 242 VNRLKASLPNVKRVHLISLLFNIGYQDYDQSLEDLHRYFDYVNGQMTSSQWSSSASSFLF 301
Query: 358 AQPSI----------------------GCNSFGRYEIALLCLGMMHFHFGHPKQALDVLT 395
G + A+L L +H+HFGH +++ L
Sbjct: 302 TPNDNYQSGNSNSSNYYYNNYNFIGGSGDTTNLMLPYAVLNLVRLHYHFGHYEESYLALR 361
Query: 396 EAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPITS--IGTTLSVQQQL 453
EA+ ++Q+ ++ +CLA ++ LL + S Y+ + S + L
Sbjct: 362 EAIRIAQERADHSCLALADHWLARLLKK-----------SVYNSMESSNLLQYLLASHSD 410
Query: 454 FVLLKESFRRAESLKLKRLVAANHLAMAKFDL 485
+LK+S R+ L++ L+A NH A +K+ L
Sbjct: 411 SEILKKSIERSRDLEMPDLLALNHTAFSKYKL 442
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 11 FAVTPHKVSVCILIQMYAPPAMMSVPFPFSSVAQHNRFGLYLFALTKSCED-----ILEP 65
+ +TPHK+++C+L++ Y ++ H + L + E+ + E
Sbjct: 4 YRLTPHKITICVLVEYYLN----------GTIKYHQKQSLSHLLIRHIKENNYQDTVKEV 53
Query: 66 KLDELINQLREIGDVL-YQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGT-DLSAVDD 123
L + I +E+ VL Q++ ++ + R+ S DD++ S L+ + G+ D +++
Sbjct: 54 SLYDFIE--KELKYVLPIQFINNEFL-RMIQFDSVDDIYQFMSSLKELFNGSNDHESINS 110
Query: 124 EQV-VLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTSIGIYCKE 166
+Q+ +LD S LG+F+++ +L FN + F+G+ L + Y +
Sbjct: 111 KQMQLLDSKSILGIFIKKVILNFNQILFDGLIKLYDQLDQYLND 154
>sp|Q9P4W7|APC5_SCHPO Anaphase-promoting complex subunit 5 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=apc5 PE=1 SV=3
Length = 744
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 288 QADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFD 347
Q + ++K G + L E + L+ L+ ++ ++LNS + DY ++ENL RYFD
Sbjct: 229 QIEHMQKFGCALPLEMKEKLHDLLEVEENNLNTSYYCKFLNSWFSGDYQQSVENLCRYFD 288
Query: 348 YSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSND 407
+ ++ Y+ ALL L M+ FG ++AL + + + +++ +
Sbjct: 289 HIMHSD------------EKVSYQYALLNLAMLQADFGCNEEALHAIEDTINTARESGDT 336
Query: 408 TCLAYTLA 415
CL + LA
Sbjct: 337 ACLNFALA 344
>sp|Q08683|APC5_YEAST Anaphase-promoting complex subunit 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APC5 PE=1 SV=1
Length = 685
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 321 VHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMM 380
+ L+YL ++ + Y AL++LH YFDY S G NS + I+LL L
Sbjct: 301 IFILKYLEAIKENSYQTALDSLHNYFDYK-----------STG-NSQNYFHISLLSLATF 348
Query: 381 HFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLL 421
H F A++ EA +++++ + L + I N +
Sbjct: 349 HSSFNECDAAINSFEEATRIARENKDMETLNLIMIWIINFI 389
>sp|O31516|YESM_BACSU Sensor histidine kinase YesM OS=Bacillus subtilis (strain 168)
GN=yesM PE=3 SV=1
Length = 577
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 32 MMSVPFPFSSVAQHNRFGLYLFALTKSCEDILEPKLDELINQLREIGDVLYQWLTDQLIS 91
+M+V F F F +Y + + ++L + + ++L++I DV Y+ +TD+ I
Sbjct: 25 IMAVSFLFVYSGVQYAFHVYDEQIYRKSSEVLRMSSERIEDELKKIEDVSYEIITDEQIQ 84
Query: 92 RLSSLSSPDDLFNLF 106
R+ S+ + DD ++ +
Sbjct: 85 RILSMQNRDDTYDQY 99
>sp|B8ELI3|TYSY_METSB Thymidylate synthase OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=thyA PE=3 SV=1
Length = 269
Score = 35.8 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 715 RTLLAANQFSEAAAVAHSLFCMC-YKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773
R L++A ++ A+A + C C ++FN++ ++ L +++++SG+A LG P+ +AS
Sbjct: 127 RLLVSAWNPADLPAMALAP-CHCLFQFNVRDDSTGTRRLDLQLYQRSGDAFLGAPFNIAS 185
Query: 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815
+ L +L+ + LT + +FG H + N I QA
Sbjct: 186 YA----LLTELVASVCGLTPGDFVHTFGDAHLYL--NHIDQA 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,372,638
Number of Sequences: 539616
Number of extensions: 12693194
Number of successful extensions: 35537
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 35488
Number of HSP's gapped (non-prelim): 51
length of query: 924
length of database: 191,569,459
effective HSP length: 127
effective length of query: 797
effective length of database: 123,038,227
effective search space: 98061466919
effective search space used: 98061466919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)