Query 002424
Match_columns 924
No_of_seqs 238 out of 349
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:39:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4322 Anaphase-promoting com 100.0 2.4E-39 5.1E-44 348.9 36.2 462 278-920 18-482 (482)
2 PF12862 Apc5: Anaphase-promot 99.8 1.2E-20 2.6E-25 171.8 10.1 93 322-423 1-93 (94)
3 KOG1130 Predicted G-alpha GTPa 99.7 2.4E-16 5.2E-21 169.7 18.8 272 624-906 54-346 (639)
4 KOG1130 Predicted G-alpha GTPa 99.7 1.7E-15 3.7E-20 163.2 19.4 272 625-908 17-308 (639)
5 KOG1941 Acetylcholine receptor 99.5 5.7E-12 1.2E-16 134.7 27.1 287 613-908 71-364 (518)
6 PRK11447 cellulose synthase su 99.5 3.9E-10 8.4E-15 146.7 46.2 482 282-901 28-521 (1157)
7 KOG1840 Kinesin light chain [C 99.5 2.6E-11 5.6E-16 140.6 30.8 271 622-900 196-475 (508)
8 KOG4626 O-linked N-acetylgluco 99.5 1.2E-11 2.5E-16 139.6 26.0 260 592-897 218-478 (966)
9 TIGR00990 3a0801s09 mitochondr 99.4 4.3E-10 9.4E-15 137.1 39.6 212 625-870 365-577 (615)
10 PRK11447 cellulose synthase su 99.4 1.4E-09 3.1E-14 141.4 44.2 131 747-897 603-733 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 3.8E-09 8.2E-14 132.6 45.6 184 673-898 711-894 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.4 4.5E-09 9.8E-14 131.9 46.0 230 626-901 466-695 (899)
13 KOG4626 O-linked N-acetylgluco 99.4 2.8E-11 6E-16 136.6 22.8 200 624-863 285-484 (966)
14 TIGR00990 3a0801s09 mitochondr 99.4 2.3E-09 4.9E-14 130.8 39.3 238 623-900 329-567 (615)
15 PRK04841 transcriptional regul 99.4 1.2E-09 2.6E-14 139.1 37.9 297 588-896 455-752 (903)
16 KOG1941 Acetylcholine receptor 99.4 9.9E-11 2.2E-15 125.3 22.3 257 620-889 38-300 (518)
17 PRK15174 Vi polysaccharide exp 99.3 6E-09 1.3E-13 127.6 37.5 97 282-400 43-139 (656)
18 KOG1840 Kinesin light chain [C 99.3 1.1E-09 2.3E-14 127.3 28.4 239 624-870 240-485 (508)
19 PRK04841 transcriptional regul 99.2 2.3E-08 5E-13 127.5 33.6 268 621-903 370-640 (903)
20 KOG2002 TPR-containing nuclear 99.2 3.9E-07 8.4E-12 109.0 40.3 242 625-902 496-743 (1018)
21 PRK11788 tetratricopeptide rep 99.1 1.9E-08 4E-13 115.3 27.6 240 625-901 69-308 (389)
22 PRK11788 tetratricopeptide rep 99.1 5.2E-08 1.1E-12 111.6 28.8 210 621-865 103-312 (389)
23 PF14938 SNAP: Soluble NSF att 99.1 6.1E-09 1.3E-13 114.5 18.6 218 674-904 44-263 (282)
24 PRK10049 pgaA outer membrane p 99.0 4.3E-07 9.4E-12 113.5 36.6 234 638-901 206-453 (765)
25 PRK10049 pgaA outer membrane p 99.0 2.8E-06 6E-11 106.3 42.1 214 624-866 236-458 (765)
26 TIGR02521 type_IV_pilW type IV 99.0 2.5E-08 5.5E-13 103.7 20.4 206 621-864 27-232 (234)
27 KOG4322 Anaphase-promoting com 99.0 8.6E-08 1.9E-12 105.6 24.1 319 6-421 17-342 (482)
28 PF14938 SNAP: Soluble NSF att 98.9 7.2E-08 1.6E-12 106.0 21.1 194 680-904 30-225 (282)
29 PRK15174 Vi polysaccharide exp 98.9 3.2E-07 6.9E-12 112.5 28.3 226 626-897 145-374 (656)
30 TIGR02521 type_IV_pilW type IV 98.8 4.7E-07 1E-11 94.2 21.0 192 673-902 39-230 (234)
31 cd05804 StaR_like StaR_like; a 98.8 6.3E-06 1.4E-10 93.2 30.8 286 586-905 7-337 (355)
32 KOG1126 DNA-binding cell divis 98.8 1.7E-07 3.8E-12 108.4 16.9 259 601-900 328-616 (638)
33 KOG2002 TPR-containing nuclear 98.8 2.1E-05 4.6E-10 94.6 34.5 249 626-906 271-538 (1018)
34 PRK09782 bacteriophage N4 rece 98.7 9.4E-07 2E-11 111.6 24.4 227 624-900 476-702 (987)
35 PRK14574 hmsH outer membrane p 98.7 8E-05 1.7E-09 92.6 40.2 196 674-898 301-507 (822)
36 PRK09782 bacteriophage N4 rece 98.7 4.9E-07 1.1E-11 114.1 20.9 196 628-865 512-707 (987)
37 PRK11189 lipoprotein NlpI; Pro 98.7 2.2E-06 4.7E-11 95.0 23.8 227 620-886 59-285 (296)
38 COG2956 Predicted N-acetylgluc 98.7 2.1E-06 4.5E-11 91.9 21.7 217 625-871 69-285 (389)
39 COG3063 PilF Tfp pilus assembl 98.6 5.7E-06 1.2E-10 85.2 21.8 219 603-859 8-231 (250)
40 cd05804 StaR_like StaR_like; a 98.6 1.2E-05 2.7E-10 90.9 26.3 238 623-880 112-352 (355)
41 PRK12370 invasion protein regu 98.6 4.7E-06 1E-10 100.4 23.4 225 625-896 295-528 (553)
42 PRK14574 hmsH outer membrane p 98.6 0.00026 5.7E-09 88.1 39.0 247 626-896 204-471 (822)
43 TIGR00540 hemY_coli hemY prote 98.5 4.5E-05 9.8E-10 88.5 28.8 288 588-913 121-408 (409)
44 PRK12370 invasion protein regu 98.5 4.9E-06 1.1E-10 100.2 21.4 213 638-890 274-490 (553)
45 KOG2300 Uncharacterized conser 98.5 0.0035 7.7E-08 70.8 40.9 215 677-900 287-552 (629)
46 PRK10747 putative protoheme IX 98.5 7.6E-06 1.6E-10 94.6 20.6 231 626-899 119-385 (398)
47 KOG1126 DNA-binding cell divis 98.5 6.7E-06 1.5E-10 95.5 19.5 228 589-863 392-619 (638)
48 PRK11189 lipoprotein NlpI; Pro 98.4 2.1E-05 4.5E-10 87.2 21.9 221 638-899 39-260 (296)
49 PF13429 TPR_15: Tetratricopep 98.4 7.5E-07 1.6E-11 97.7 10.1 225 626-896 45-269 (280)
50 TIGR03302 OM_YfiO outer membra 98.4 1.9E-05 4.1E-10 84.1 20.4 181 621-815 29-229 (235)
51 COG3063 PilF Tfp pilus assembl 98.4 6.4E-06 1.4E-10 84.8 14.0 140 702-865 30-169 (250)
52 PRK15179 Vi polysaccharide bio 98.4 1E-05 2.2E-10 98.7 18.0 133 707-865 86-218 (694)
53 KOG2003 TPR repeat-containing 98.3 0.00024 5.3E-09 78.8 26.5 236 626-902 455-720 (840)
54 KOG1155 Anaphase-promoting com 98.3 0.0028 6E-08 71.4 33.9 200 627-862 332-534 (559)
55 PLN03081 pentatricopeptide (PP 98.3 0.0023 5E-08 79.6 36.3 235 626-907 326-560 (697)
56 KOG2076 RNA polymerase III tra 98.3 0.0021 4.5E-08 77.5 33.4 44 371-414 139-197 (895)
57 TIGR03302 OM_YfiO outer membra 98.2 5.4E-05 1.2E-09 80.6 18.0 174 673-865 41-233 (235)
58 COG3071 HemY Uncharacterized e 98.2 0.00056 1.2E-08 75.8 25.3 243 626-902 85-388 (400)
59 KOG0547 Translocase of outer m 98.2 0.0018 3.9E-08 73.2 29.3 207 628-868 363-570 (606)
60 PRK15179 Vi polysaccharide bio 98.2 5.4E-05 1.2E-09 92.5 19.1 133 625-777 86-218 (694)
61 TIGR00540 hemY_coli hemY prote 98.2 0.00072 1.6E-08 78.5 27.4 97 787-899 263-359 (409)
62 PF09976 TPR_21: Tetratricopep 98.2 9.5E-05 2.1E-09 72.9 16.9 124 636-774 22-145 (145)
63 KOG1155 Anaphase-promoting com 98.1 0.00012 2.5E-09 82.1 17.5 198 673-904 338-536 (559)
64 PLN03218 maturation of RBCL 1; 98.1 0.01 2.3E-07 76.2 37.6 204 625-863 579-782 (1060)
65 COG2956 Predicted N-acetylgluc 98.1 0.001 2.2E-08 71.9 23.5 222 639-896 49-270 (389)
66 PF13429 TPR_15: Tetratricopep 98.1 3.3E-05 7.2E-10 84.7 12.6 196 629-864 82-277 (280)
67 PF13424 TPR_12: Tetratricopep 98.0 3.5E-05 7.7E-10 67.1 10.1 74 706-779 4-78 (78)
68 PRK10747 putative protoheme IX 98.0 0.00082 1.8E-08 77.8 23.9 234 624-899 83-352 (398)
69 COG2909 MalT ATP-dependent tra 98.0 0.0012 2.6E-08 79.7 25.4 286 594-896 387-680 (894)
70 PF09976 TPR_21: Tetratricopep 98.0 0.00025 5.3E-09 69.9 16.3 133 709-862 13-145 (145)
71 PLN03218 maturation of RBCL 1; 97.9 0.0013 2.8E-08 84.4 24.4 244 625-906 542-785 (1060)
72 PF13424 TPR_12: Tetratricopep 97.9 9.2E-05 2E-09 64.5 9.8 75 785-867 3-78 (78)
73 KOG0550 Molecular chaperone (D 97.9 0.00047 1E-08 76.5 16.9 239 633-910 177-426 (486)
74 KOG1173 Anaphase-promoting com 97.9 0.00027 5.8E-09 81.1 15.5 205 592-819 312-519 (611)
75 KOG4162 Predicted calmodulin-b 97.8 0.0018 4E-08 76.8 22.0 252 626-904 479-783 (799)
76 KOG2003 TPR repeat-containing 97.8 0.0003 6.4E-09 78.1 14.1 184 674-896 428-613 (840)
77 KOG1174 Anaphase-promoting com 97.8 0.0017 3.7E-08 71.9 19.7 231 625-896 232-492 (564)
78 KOG1129 TPR repeat-containing 97.7 0.00044 9.5E-09 74.4 13.7 197 664-899 223-419 (478)
79 PLN03077 Protein ECB2; Provisi 97.7 0.048 1E-06 69.6 34.6 156 628-816 392-581 (857)
80 PF10345 Cohesin_load: Cohesin 97.7 0.08 1.7E-06 64.8 34.9 279 617-906 51-392 (608)
81 KOG1586 Protein required for f 97.7 0.0053 1.1E-07 63.7 20.1 214 639-887 28-246 (288)
82 PRK15359 type III secretion sy 97.7 0.00053 1.1E-08 67.6 12.8 91 673-777 32-122 (144)
83 CHL00033 ycf3 photosystem I as 97.7 0.00053 1.2E-08 69.2 13.2 135 723-872 15-152 (168)
84 PRK15359 type III secretion sy 97.7 0.00032 7E-09 69.1 11.1 110 685-819 13-122 (144)
85 KOG2076 RNA polymerase III tra 97.7 0.0083 1.8E-07 72.6 24.5 124 750-897 382-505 (895)
86 KOG0547 Translocase of outer m 97.7 0.001 2.2E-08 75.2 15.6 174 626-821 395-569 (606)
87 PF10345 Cohesin_load: Cohesin 97.7 0.32 6.9E-06 59.6 48.5 223 673-904 369-606 (608)
88 KOG1129 TPR repeat-containing 97.6 0.0016 3.4E-08 70.3 15.9 225 629-897 227-451 (478)
89 PF13525 YfiO: Outer membrane 97.6 0.0092 2E-07 62.4 21.7 171 622-803 2-194 (203)
90 KOG1173 Anaphase-promoting com 97.6 0.0011 2.3E-08 76.3 15.4 205 626-865 313-519 (611)
91 PF12688 TPR_5: Tetratrico pep 97.6 0.0016 3.4E-08 62.0 14.3 114 708-833 2-116 (120)
92 KOG3060 Uncharacterized conser 97.6 0.015 3.3E-07 61.2 21.7 211 582-820 7-222 (289)
93 PLN03077 Protein ECB2; Provisi 97.6 0.15 3.3E-06 65.1 35.6 193 673-908 532-724 (857)
94 PF12862 Apc5: Anaphase-promot 97.5 0.00097 2.1E-08 60.7 10.9 81 717-797 8-91 (94)
95 PLN03081 pentatricopeptide (PP 97.4 0.0027 5.9E-08 79.0 16.9 233 623-901 288-520 (697)
96 CHL00033 ycf3 photosystem I as 97.4 0.0025 5.5E-08 64.3 13.7 130 680-820 14-144 (168)
97 COG2909 MalT ATP-dependent tra 97.4 0.044 9.6E-07 66.7 25.3 262 588-860 416-684 (894)
98 PRK10866 outer membrane biogen 97.4 0.022 4.7E-07 61.3 21.1 187 673-901 40-238 (243)
99 PRK10866 outer membrane biogen 97.4 0.042 9.1E-07 59.2 23.0 173 625-813 32-236 (243)
100 PF12688 TPR_5: Tetratrico pep 97.3 0.0041 8.9E-08 59.2 13.2 101 748-863 2-103 (120)
101 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0032 7E-08 58.6 12.3 103 626-736 3-105 (119)
102 KOG1585 Protein required for f 97.3 0.044 9.4E-07 57.5 20.7 179 716-903 40-218 (308)
103 PF13525 YfiO: Outer membrane 97.3 0.03 6.4E-07 58.6 20.1 177 704-896 2-199 (203)
104 KOG0495 HAT repeat protein [RN 97.3 0.0055 1.2E-07 71.5 15.4 157 631-816 590-746 (913)
105 COG5010 TadD Flp pilus assembl 97.2 0.0042 9.1E-08 65.7 13.0 159 629-815 70-228 (257)
106 KOG0624 dsRNA-activated protei 97.2 0.053 1.1E-06 59.3 21.2 138 623-776 104-252 (504)
107 KOG2300 Uncharacterized conser 97.2 0.047 1E-06 62.1 21.5 204 630-841 328-537 (629)
108 PRK10370 formate-dependent nit 97.2 0.0064 1.4E-07 63.3 14.2 101 625-738 73-175 (198)
109 PF12895 Apc3: Anaphase-promot 97.2 0.002 4.3E-08 57.0 8.8 83 678-773 2-84 (84)
110 PRK10370 formate-dependent nit 97.2 0.0056 1.2E-07 63.8 13.4 122 638-779 52-176 (198)
111 KOG2376 Signal recognition par 97.2 0.22 4.8E-06 58.2 26.9 125 629-770 114-247 (652)
112 KOG1586 Protein required for f 97.2 0.017 3.6E-07 60.1 16.0 154 721-905 28-181 (288)
113 PRK15363 pathogenicity island 97.1 0.0046 9.9E-08 61.2 11.5 91 673-777 43-133 (157)
114 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0051 1.1E-07 57.3 11.5 104 708-819 3-106 (119)
115 PRK02603 photosystem I assembl 97.1 0.0045 9.7E-08 62.8 11.6 92 703-803 31-122 (172)
116 cd00189 TPR Tetratricopeptide 97.1 0.0017 3.7E-08 55.9 7.4 95 709-817 2-96 (100)
117 KOG0550 Molecular chaperone (D 97.1 0.054 1.2E-06 60.6 20.1 224 628-876 206-435 (486)
118 PRK02603 photosystem I assembl 97.0 0.015 3.3E-07 58.9 14.8 118 741-869 29-147 (172)
119 KOG1585 Protein required for f 97.0 0.071 1.5E-06 56.0 19.2 144 742-894 26-169 (308)
120 PRK15363 pathogenicity island 97.0 0.012 2.5E-07 58.4 13.1 100 706-819 34-133 (157)
121 PLN03088 SGT1, suppressor of 97.0 0.004 8.6E-08 71.0 11.4 91 673-777 10-100 (356)
122 TIGR02552 LcrH_SycD type III s 97.0 0.0061 1.3E-07 58.6 10.8 91 673-777 25-115 (135)
123 KOG0624 dsRNA-activated protei 97.0 0.038 8.3E-07 60.3 17.4 173 625-817 72-251 (504)
124 COG3071 HemY Uncharacterized e 97.0 0.092 2E-06 58.7 20.8 210 621-867 149-393 (400)
125 COG4700 Uncharacterized protei 96.9 0.046 9.9E-07 55.1 16.0 129 673-821 97-225 (251)
126 PF13414 TPR_11: TPR repeat; P 96.9 0.0034 7.4E-08 53.0 7.2 64 707-776 3-67 (69)
127 COG4783 Putative Zn-dependent 96.9 0.034 7.3E-07 63.6 16.8 122 626-768 307-429 (484)
128 KOG1125 TPR repeat-containing 96.9 0.012 2.6E-07 68.3 13.2 190 673-897 293-520 (579)
129 KOG3060 Uncharacterized conser 96.9 0.3 6.5E-06 51.8 22.2 193 640-866 27-222 (289)
130 KOG3617 WD40 and TPR repeat-co 96.8 1.8 3.9E-05 52.5 30.7 139 626-785 968-1124(1416)
131 KOG1125 TPR repeat-containing 96.8 0.054 1.2E-06 63.0 18.2 228 631-893 291-560 (579)
132 PLN03088 SGT1, suppressor of 96.8 0.018 4E-07 65.5 14.7 95 628-736 5-99 (356)
133 KOG4555 TPR repeat-containing 96.8 0.0093 2E-07 56.5 9.9 94 674-777 52-145 (175)
134 TIGR02552 LcrH_SycD type III s 96.8 0.014 3E-07 56.1 11.6 98 625-737 17-115 (135)
135 PF12895 Apc3: Anaphase-promot 96.8 0.0056 1.2E-07 54.2 7.9 83 720-815 2-84 (84)
136 KOG1127 TPR repeat-containing 96.7 0.087 1.9E-06 64.6 19.6 243 587-866 456-702 (1238)
137 cd00189 TPR Tetratricopeptide 96.7 0.013 2.7E-07 50.4 9.7 95 627-735 2-96 (100)
138 PF12569 NARP1: NMDA receptor- 96.6 2.4 5.2E-05 50.7 32.1 155 620-791 189-349 (517)
139 KOG0548 Molecular co-chaperone 96.6 0.058 1.3E-06 62.2 16.5 158 624-817 297-454 (539)
140 KOG0495 HAT repeat protein [RN 96.6 0.32 7E-06 57.4 22.4 228 636-904 629-880 (913)
141 KOG4555 TPR repeat-containing 96.6 0.045 9.8E-07 52.1 12.9 108 709-830 45-152 (175)
142 KOG1174 Anaphase-promoting com 96.6 0.061 1.3E-06 60.1 15.9 192 632-864 307-500 (564)
143 KOG0553 TPR repeat-containing 96.6 0.013 2.8E-07 63.3 10.5 99 706-818 80-178 (304)
144 PF13432 TPR_16: Tetratricopep 96.6 0.011 2.3E-07 49.4 8.0 60 711-776 1-60 (65)
145 KOG3617 WD40 and TPR repeat-co 96.6 0.17 3.8E-06 60.7 20.1 175 632-863 807-995 (1416)
146 KOG4162 Predicted calmodulin-b 96.6 2.9 6.3E-05 50.7 36.0 106 624-736 512-619 (799)
147 PRK14720 transcript cleavage f 96.5 0.26 5.6E-06 61.8 21.9 216 623-867 29-255 (906)
148 KOG4340 Uncharacterized conser 96.4 0.21 4.5E-06 53.8 17.9 167 624-820 43-209 (459)
149 KOG1070 rRNA processing protei 96.4 1.1 2.4E-05 57.3 26.1 236 634-910 1467-1706(1710)
150 KOG0548 Molecular co-chaperone 96.3 0.13 2.8E-06 59.5 16.9 235 589-865 221-456 (539)
151 PF12569 NARP1: NMDA receptor- 96.3 0.28 6.1E-06 58.4 20.4 231 629-906 8-259 (517)
152 PF04733 Coatomer_E: Coatomer 96.3 0.024 5.2E-07 62.6 10.7 225 620-897 30-258 (290)
153 KOG0553 TPR repeat-containing 96.3 0.017 3.7E-07 62.3 9.0 91 673-777 89-179 (304)
154 PRK15331 chaperone protein Sic 96.3 0.046 1E-06 54.5 11.4 114 706-836 36-149 (165)
155 KOG4340 Uncharacterized conser 96.3 0.05 1.1E-06 58.4 12.2 153 609-783 61-214 (459)
156 PRK14720 transcript cleavage f 96.3 0.048 1E-06 68.1 14.1 154 706-882 30-196 (906)
157 COG5010 TadD Flp pilus assembl 96.2 0.049 1.1E-06 57.8 11.9 121 631-771 106-226 (257)
158 PRK10803 tol-pal system protei 96.2 0.064 1.4E-06 58.4 13.2 93 676-776 154-246 (263)
159 PLN02789 farnesyltranstransfer 96.2 1.5 3.3E-05 49.1 24.5 225 623-887 35-267 (320)
160 PRK10803 tol-pal system protei 96.1 0.096 2.1E-06 57.0 13.9 103 626-736 143-246 (263)
161 PF09295 ChAPs: ChAPs (Chs5p-A 96.0 0.11 2.3E-06 59.8 14.6 116 633-771 177-292 (395)
162 PF13176 TPR_7: Tetratricopept 96.0 0.013 2.9E-07 43.1 4.8 35 373-407 1-35 (36)
163 PF09295 ChAPs: ChAPs (Chs5p-A 96.0 0.13 2.9E-06 59.0 14.9 118 676-819 180-297 (395)
164 PF04733 Coatomer_E: Coatomer 96.0 0.037 8E-07 61.2 10.1 146 627-803 104-251 (290)
165 PF13432 TPR_16: Tetratricopep 95.9 0.036 7.8E-07 46.1 7.8 56 673-736 5-60 (65)
166 PRK10153 DNA-binding transcrip 95.9 0.14 2.9E-06 61.3 15.2 137 706-863 338-481 (517)
167 KOG0543 FKBP-type peptidyl-pro 95.8 0.055 1.2E-06 60.8 10.6 66 706-777 256-321 (397)
168 COG4105 ComL DNA uptake lipopr 95.8 1.6 3.4E-05 46.8 20.7 174 624-810 33-225 (254)
169 PF14559 TPR_19: Tetratricopep 95.7 0.034 7.3E-07 46.6 6.7 52 676-735 2-53 (68)
170 PF13414 TPR_11: TPR repeat; P 95.7 0.035 7.6E-07 46.7 6.7 64 747-818 3-67 (69)
171 PF10602 RPN7: 26S proteasome 95.7 0.21 4.5E-06 51.1 13.5 117 615-736 26-142 (177)
172 COG4700 Uncharacterized protei 95.7 0.68 1.5E-05 47.0 16.3 100 708-818 90-189 (251)
173 KOG1463 26S proteasome regulat 95.6 3 6.5E-05 46.1 22.2 210 673-893 56-267 (411)
174 COG2976 Uncharacterized protei 95.5 0.49 1.1E-05 48.4 15.1 92 673-776 97-188 (207)
175 PRK10153 DNA-binding transcrip 95.5 0.14 3.1E-06 61.0 13.3 124 678-818 355-482 (517)
176 PF11817 Foie-gras_1: Foie gra 95.5 1.8 4E-05 46.6 20.6 181 708-896 11-239 (247)
177 KOG3081 Vesicle coat complex C 95.5 0.87 1.9E-05 48.7 17.2 147 708-891 109-257 (299)
178 PF13512 TPR_18: Tetratricopep 95.4 0.35 7.7E-06 47.2 13.3 90 625-722 10-99 (142)
179 KOG1156 N-terminal acetyltrans 95.4 3.2 7E-05 49.4 23.2 229 627-895 9-239 (700)
180 COG4783 Putative Zn-dependent 95.4 0.49 1.1E-05 54.4 16.2 143 673-841 314-456 (484)
181 KOG3616 Selective LIM binding 95.4 3.7 8E-05 49.2 23.3 67 586-653 655-734 (1636)
182 PF08631 SPO22: Meiosis protei 95.3 5.4 0.00012 43.8 23.9 140 675-820 3-152 (278)
183 COG3898 Uncharacterized membra 95.2 6.2 0.00013 44.5 23.5 162 631-815 126-289 (531)
184 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.09 2E-06 60.4 9.2 67 706-776 74-141 (453)
185 PF12968 DUF3856: Domain of Un 95.0 1 2.2E-05 42.4 14.2 105 673-777 17-130 (144)
186 KOG0543 FKBP-type peptidyl-pro 94.9 0.33 7.1E-06 54.7 12.8 101 627-736 210-320 (397)
187 KOG1463 26S proteasome regulat 94.8 2.9 6.3E-05 46.2 19.2 211 626-842 49-264 (411)
188 KOG3785 Uncharacterized conser 94.6 9.4 0.0002 42.5 31.8 203 625-845 185-444 (557)
189 COG5159 RPN6 26S proteasome re 94.4 8.9 0.00019 41.5 22.9 241 631-881 9-252 (421)
190 PF13371 TPR_9: Tetratricopept 94.4 0.27 5.9E-06 41.7 8.8 58 673-738 3-60 (73)
191 COG4105 ComL DNA uptake lipopr 94.2 7.3 0.00016 41.8 20.5 188 673-901 42-230 (254)
192 KOG2610 Uncharacterized conser 94.2 5.3 0.00011 44.2 19.4 171 634-824 112-282 (491)
193 PLN02789 farnesyltranstransfer 94.2 6 0.00013 44.4 21.0 182 626-841 72-267 (320)
194 KOG1128 Uncharacterized conser 94.1 1 2.2E-05 54.2 15.0 153 625-797 485-637 (777)
195 KOG3785 Uncharacterized conser 94.0 0.7 1.5E-05 51.0 12.5 165 615-816 47-212 (557)
196 KOG1128 Uncharacterized conser 93.9 0.31 6.8E-06 58.3 10.4 127 676-824 496-622 (777)
197 PF08626 TRAPPC9-Trs120: Trans 93.8 3.1 6.8E-05 55.0 20.7 179 710-896 245-544 (1185)
198 KOG2047 mRNA splicing factor [ 93.8 12 0.00025 45.0 22.4 242 634-894 111-406 (835)
199 PF13371 TPR_9: Tetratricopept 93.7 0.15 3.2E-06 43.4 5.7 59 714-778 2-60 (73)
200 COG3898 Uncharacterized membra 93.7 14 0.0003 41.9 21.8 168 631-817 90-257 (531)
201 PRK11906 transcriptional regul 93.7 2.6 5.7E-05 48.8 17.0 114 678-813 317-431 (458)
202 PF04190 DUF410: Protein of un 93.5 7.7 0.00017 42.2 19.8 168 637-838 2-170 (260)
203 KOG3081 Vesicle coat complex C 93.4 4 8.6E-05 43.9 16.4 145 629-803 112-257 (299)
204 COG4785 NlpI Lipoprotein NlpI, 93.3 8.2 0.00018 40.4 18.1 230 620-891 60-291 (297)
205 KOG2047 mRNA splicing factor [ 93.2 24 0.00052 42.4 31.2 186 623-817 385-578 (835)
206 KOG1127 TPR repeat-containing 93.0 2.6 5.6E-05 52.4 16.2 176 624-819 525-701 (1238)
207 PF14559 TPR_19: Tetratricopep 92.9 0.15 3.3E-06 42.6 4.5 55 717-777 1-55 (68)
208 PF10602 RPN7: 26S proteasome 92.9 1.5 3.3E-05 44.7 12.6 128 728-866 17-144 (177)
209 KOG1156 N-terminal acetyltrans 92.9 11 0.00024 45.2 20.6 173 627-821 43-217 (700)
210 COG1729 Uncharacterized protei 92.7 0.93 2E-05 48.8 10.9 93 674-774 150-242 (262)
211 COG0457 NrfG FOG: TPR repeat [ 92.5 11 0.00023 37.1 18.3 174 623-820 93-267 (291)
212 PRK15331 chaperone protein Sic 92.5 0.98 2.1E-05 45.2 10.0 90 673-776 45-134 (165)
213 PF13176 TPR_7: Tetratricopept 92.4 0.31 6.7E-06 35.8 4.9 29 710-738 2-30 (36)
214 COG3118 Thioredoxin domain-con 92.2 5.8 0.00013 43.3 16.1 148 632-803 141-288 (304)
215 COG1729 Uncharacterized protei 92.2 1.4 3.1E-05 47.4 11.5 98 628-736 144-244 (262)
216 PLN03098 LPA1 LOW PSII ACCUMUL 92.1 0.87 1.9E-05 52.6 10.3 67 746-818 74-141 (453)
217 KOG4234 TPR repeat-containing 92.0 1.6 3.4E-05 44.9 10.9 98 629-735 99-196 (271)
218 PF00515 TPR_1: Tetratricopept 91.9 0.22 4.8E-06 35.6 3.6 32 372-403 2-33 (34)
219 PF10300 DUF3808: Protein of u 91.8 6.3 0.00014 46.7 17.7 167 677-870 200-375 (468)
220 PF10300 DUF3808: Protein of u 91.8 2.9 6.3E-05 49.5 14.9 126 638-778 246-378 (468)
221 PF13374 TPR_10: Tetratricopep 91.8 0.3 6.4E-06 36.4 4.4 33 372-404 3-35 (42)
222 COG4235 Cytochrome c biogenesi 91.7 2.4 5.2E-05 46.3 12.7 98 628-738 159-258 (287)
223 COG5159 RPN6 26S proteasome re 91.6 6.5 0.00014 42.5 15.4 202 673-886 11-216 (421)
224 KOG1915 Cell cycle control pro 91.5 32 0.0007 39.9 22.1 202 639-873 380-594 (677)
225 PF13512 TPR_18: Tetratricopep 91.5 1.6 3.5E-05 42.7 10.1 82 673-762 18-99 (142)
226 COG0457 NrfG FOG: TPR repeat [ 91.4 16 0.00034 36.0 21.7 208 625-867 59-268 (291)
227 PF13181 TPR_8: Tetratricopept 91.3 0.42 9E-06 34.1 4.5 30 373-402 3-32 (34)
228 PF03704 BTAD: Bacterial trans 91.1 12 0.00027 36.2 16.3 109 626-742 7-132 (146)
229 KOG2041 WD40 repeat protein [G 91.1 30 0.00065 41.9 21.2 245 634-900 743-1046(1189)
230 PF08626 TRAPPC9-Trs120: Trans 91.0 2.6 5.6E-05 55.7 14.6 149 744-893 239-463 (1185)
231 COG3118 Thioredoxin domain-con 90.9 3.3 7.2E-05 45.2 12.7 141 673-835 142-282 (304)
232 KOG1464 COP9 signalosome, subu 90.7 24 0.00053 38.0 18.4 257 638-910 40-316 (440)
233 KOG1070 rRNA processing protei 90.6 3.9 8.4E-05 52.6 14.5 136 625-778 1530-1665(1710)
234 KOG2796 Uncharacterized conser 90.4 5.3 0.00011 42.8 13.2 134 673-821 185-318 (366)
235 KOG2581 26S proteasome regulat 90.1 10 0.00022 43.1 15.8 177 706-893 125-305 (493)
236 PF12739 TRAPPC-Trs85: ER-Golg 90.1 28 0.00061 40.5 20.7 174 709-886 210-401 (414)
237 PF03704 BTAD: Bacterial trans 90.1 6 0.00013 38.5 13.1 131 705-873 4-135 (146)
238 KOG2471 TPR repeat-containing 89.9 0.66 1.4E-05 53.2 6.5 128 706-841 239-381 (696)
239 KOG1915 Cell cycle control pro 89.8 29 0.00063 40.3 19.2 200 635-863 332-535 (677)
240 TIGR03504 FimV_Cterm FimV C-te 89.8 0.84 1.8E-05 35.3 5.1 42 790-837 2-43 (44)
241 COG2976 Uncharacterized protei 89.8 6.2 0.00013 40.6 12.7 101 707-819 89-189 (207)
242 PF13374 TPR_10: Tetratricopep 89.7 0.7 1.5E-05 34.3 4.8 33 625-657 2-34 (42)
243 PF08631 SPO22: Meiosis protei 89.7 35 0.00076 37.4 23.2 115 617-736 27-150 (278)
244 KOG4234 TPR repeat-containing 89.6 1.6 3.6E-05 44.8 8.5 95 673-776 103-197 (271)
245 PF12968 DUF3856: Domain of Un 89.5 19 0.00042 34.1 14.9 114 707-822 9-133 (144)
246 COG5187 RPN7 26S proteasome re 89.4 11 0.00023 41.0 14.7 145 724-879 92-236 (412)
247 PRK11906 transcriptional regul 89.4 11 0.00024 43.8 16.0 111 611-736 281-401 (458)
248 PF07719 TPR_2: Tetratricopept 89.0 0.94 2E-05 32.0 4.8 31 626-656 2-32 (34)
249 KOG3616 Selective LIM binding 88.9 11 0.00025 45.3 15.7 222 628-896 768-1016(1636)
250 KOG3783 Uncharacterized conser 88.3 42 0.00092 39.7 19.7 250 626-913 268-529 (546)
251 PF13281 DUF4071: Domain of un 88.1 23 0.0005 40.5 17.3 168 673-864 149-334 (374)
252 PF00515 TPR_1: Tetratricopept 88.0 1.2 2.6E-05 31.7 4.8 32 625-656 1-32 (34)
253 PF04184 ST7: ST7 protein; In 87.9 28 0.0006 40.9 17.7 65 702-770 254-318 (539)
254 PF11817 Foie-gras_1: Foie gra 87.8 6.1 0.00013 42.6 12.2 89 722-812 153-241 (247)
255 KOG1839 Uncharacterized protei 87.3 7.2 0.00016 50.2 13.8 186 673-867 940-1131(1236)
256 PF09986 DUF2225: Uncharacteri 87.3 4 8.6E-05 43.1 10.1 77 702-778 113-196 (214)
257 PF10579 Rapsyn_N: Rapsyn N-te 87.0 5.4 0.00012 34.9 8.8 74 707-783 6-79 (80)
258 KOG2796 Uncharacterized conser 86.8 10 0.00022 40.7 12.5 28 708-735 287-314 (366)
259 PF09613 HrpB1_HrpK: Bacterial 86.8 6.7 0.00015 39.2 10.7 89 621-723 6-94 (160)
260 PF07719 TPR_2: Tetratricopept 86.8 1.3 2.8E-05 31.3 4.4 29 748-776 2-30 (34)
261 KOG2376 Signal recognition par 86.5 81 0.0018 37.8 39.8 274 582-888 221-505 (652)
262 KOG0687 26S proteasome regulat 86.4 27 0.00058 38.7 15.7 160 726-896 83-242 (393)
263 KOG1920 IkappaB kinase complex 86.4 40 0.00086 43.4 19.1 77 754-833 959-1043(1265)
264 COG4649 Uncharacterized protei 86.2 41 0.0009 34.2 16.5 166 591-775 19-195 (221)
265 COG4785 NlpI Lipoprotein NlpI, 86.2 25 0.00055 36.9 14.6 220 586-841 66-287 (297)
266 PF10579 Rapsyn_N: Rapsyn N-te 86.2 4.2 9E-05 35.6 7.7 66 673-743 14-79 (80)
267 TIGR02561 HrpB1_HrpK type III 86.0 7.6 0.00016 38.3 10.3 87 623-723 8-94 (153)
268 PF13174 TPR_6: Tetratricopept 85.9 1.1 2.5E-05 31.3 3.6 29 372-400 1-29 (33)
269 PF13174 TPR_6: Tetratricopept 85.7 1.3 2.8E-05 31.0 3.8 31 627-657 2-32 (33)
270 PF13181 TPR_8: Tetratricopept 85.0 1.9 4.1E-05 30.6 4.5 31 748-778 2-32 (34)
271 KOG0545 Aryl-hydrocarbon recep 84.7 13 0.00028 39.7 11.9 113 628-776 181-293 (329)
272 PF09613 HrpB1_HrpK: Bacterial 84.7 10 0.00022 38.0 10.7 77 673-763 18-94 (160)
273 COG4235 Cytochrome c biogenesi 84.4 8 0.00017 42.4 10.7 91 673-777 164-257 (287)
274 PF12739 TRAPPC-Trs85: ER-Golg 84.3 72 0.0016 37.2 19.5 181 626-821 209-402 (414)
275 PF13428 TPR_14: Tetratricopep 84.1 1.9 4E-05 33.0 4.3 29 708-736 2-30 (44)
276 PF09986 DUF2225: Uncharacteri 83.4 8.6 0.00019 40.5 10.4 97 721-819 91-195 (214)
277 PF04053 Coatomer_WDAD: Coatom 82.7 11 0.00025 44.1 12.1 131 628-815 298-428 (443)
278 PF02259 FAT: FAT domain; Int 82.7 86 0.0019 34.9 23.5 138 742-890 141-307 (352)
279 PF13428 TPR_14: Tetratricopep 80.7 2.8 6.1E-05 32.0 4.2 32 373-404 3-34 (44)
280 KOG2610 Uncharacterized conser 80.5 1E+02 0.0023 34.5 20.1 161 674-860 112-272 (491)
281 PF10952 DUF2753: Protein of u 80.0 14 0.00031 35.1 9.2 70 750-821 4-82 (140)
282 PF07721 TPR_4: Tetratricopept 79.3 2.6 5.6E-05 28.4 3.1 24 626-649 2-25 (26)
283 PF04053 Coatomer_WDAD: Coatom 79.3 33 0.00071 40.4 14.2 137 672-836 268-416 (443)
284 PF04190 DUF410: Protein of un 78.4 1.1E+02 0.0023 33.4 18.0 157 719-904 2-170 (260)
285 KOG1464 COP9 signalosome, subu 78.2 57 0.0012 35.3 14.0 206 625-841 65-284 (440)
286 KOG1538 Uncharacterized conser 78.0 1.3E+02 0.0028 36.5 17.9 151 631-815 638-799 (1081)
287 TIGR02561 HrpB1_HrpK type III 78.0 12 0.00026 36.9 8.5 55 673-735 18-72 (153)
288 PF04910 Tcf25: Transcriptiona 77.2 72 0.0016 36.5 15.9 105 625-735 40-167 (360)
289 PF09670 Cas_Cas02710: CRISPR- 76.6 92 0.002 35.9 16.7 142 623-779 129-273 (379)
290 KOG4648 Uncharacterized conser 75.8 9.4 0.0002 42.3 7.7 94 629-736 101-194 (536)
291 KOG4648 Uncharacterized conser 75.7 8.6 0.00019 42.6 7.4 91 673-777 105-195 (536)
292 PF05843 Suf: Suppressor of fo 75.6 57 0.0012 35.8 14.2 134 627-777 3-137 (280)
293 COG0790 FOG: TPR repeat, SEL1 74.4 83 0.0018 34.3 15.3 173 675-889 51-236 (292)
294 TIGR03504 FimV_Cterm FimV C-te 73.6 6.5 0.00014 30.5 4.3 40 710-753 2-41 (44)
295 smart00028 TPR Tetratricopepti 73.1 4.9 0.00011 26.4 3.4 29 373-401 3-31 (34)
296 PF10516 SHNi-TPR: SHNi-TPR; 72.8 6.1 0.00013 29.6 3.8 33 748-780 2-34 (38)
297 PF09670 Cas_Cas02710: CRISPR- 72.2 78 0.0017 36.5 14.7 133 673-821 139-273 (379)
298 PF04184 ST7: ST7 protein; In 72.0 33 0.0007 40.3 11.2 63 625-691 259-321 (539)
299 PF04910 Tcf25: Transcriptiona 71.9 93 0.002 35.6 15.1 154 706-865 39-223 (360)
300 KOG2581 26S proteasome regulat 71.3 2E+02 0.0043 33.2 21.3 175 624-803 123-303 (493)
301 KOG4642 Chaperone-dependent E3 70.8 18 0.00038 38.6 8.0 97 674-784 19-115 (284)
302 KOG2053 Mitochondrial inherita 70.1 3E+02 0.0066 34.8 20.9 182 631-835 49-236 (932)
303 PF04781 DUF627: Protein of un 70.0 71 0.0015 30.0 11.0 98 713-816 2-105 (111)
304 PF07721 TPR_4: Tetratricopept 68.3 6.5 0.00014 26.5 2.9 25 372-396 2-26 (26)
305 KOG0551 Hsp90 co-chaperone CNS 67.1 71 0.0015 35.7 12.0 110 617-736 73-182 (390)
306 KOG1839 Uncharacterized protei 66.7 70 0.0015 41.7 13.5 191 625-818 932-1128(1236)
307 KOG0551 Hsp90 co-chaperone CNS 66.7 23 0.0005 39.4 8.2 92 673-774 89-180 (390)
308 KOG0687 26S proteasome regulat 66.4 1.6E+02 0.0036 32.9 14.4 126 765-904 82-207 (393)
309 smart00028 TPR Tetratricopepti 66.0 10 0.00022 24.8 3.7 31 626-656 2-32 (34)
310 KOG4507 Uncharacterized conser 65.4 4.4 9.6E-05 47.7 2.6 97 749-864 608-705 (886)
311 KOG0985 Vesicle coat protein c 64.9 2.9E+02 0.0064 35.5 17.5 190 591-824 1103-1314(1666)
312 PF07163 Pex26: Pex26 protein; 64.3 1.2E+02 0.0026 33.2 12.9 94 713-813 89-182 (309)
313 KOG0545 Aryl-hydrocarbon recep 63.7 54 0.0012 35.2 9.9 105 706-818 177-293 (329)
314 KOG2471 TPR repeat-containing 63.1 20 0.00044 41.6 7.2 69 620-692 614-682 (696)
315 KOG1497 COP9 signalosome, subu 62.0 1.4E+02 0.0031 33.3 12.9 121 621-750 99-225 (399)
316 PF13431 TPR_17: Tetratricopep 62.0 7.9 0.00017 28.0 2.6 22 706-727 12-33 (34)
317 KOG2908 26S proteasome regulat 61.5 2.8E+02 0.0061 31.3 16.1 97 639-736 89-186 (380)
318 PF07079 DUF1347: Protein of u 61.2 3.3E+02 0.0071 32.0 18.2 98 625-735 6-107 (549)
319 KOG4507 Uncharacterized conser 59.5 11 0.00024 44.5 4.4 100 706-818 606-705 (886)
320 KOG1538 Uncharacterized conser 58.8 3.9E+02 0.0084 32.7 16.5 75 711-790 636-713 (1081)
321 PF02259 FAT: FAT domain; Int 58.6 2.9E+02 0.0063 30.6 23.7 97 782-888 141-265 (352)
322 PRK12798 chemotaxis protein; R 54.1 4.1E+02 0.0089 30.9 19.1 158 675-841 158-347 (421)
323 PF05843 Suf: Suppressor of fo 53.4 1.5E+02 0.0033 32.5 12.1 129 674-821 10-139 (280)
324 KOG2561 Adaptor protein NUB1, 53.4 1.6E+02 0.0036 34.1 12.1 144 627-771 165-339 (568)
325 KOG1550 Extracellular protein 53.0 3.3E+02 0.0072 33.1 15.9 154 680-863 227-392 (552)
326 PF14853 Fis1_TPR_C: Fis1 C-te 49.6 81 0.0017 25.5 6.7 29 708-736 2-30 (53)
327 COG3903 Predicted ATPase [Gene 49.2 2.9E+02 0.0062 32.1 13.3 90 706-795 231-320 (414)
328 COG3629 DnrI DNA-binding trans 48.2 1.4E+02 0.003 32.9 10.4 87 622-714 150-236 (280)
329 KOG2041 WD40 repeat protein [G 47.8 6.4E+02 0.014 31.3 25.2 31 620-650 791-821 (1189)
330 KOG2817 Predicted E3 ubiquitin 46.8 3.8E+02 0.0083 30.7 13.7 145 584-735 77-224 (394)
331 PF10516 SHNi-TPR: SHNi-TPR; 46.0 41 0.0009 25.2 4.2 32 708-739 2-33 (38)
332 PF02845 CUE: CUE domain; Int 45.8 64 0.0014 24.4 5.4 37 306-343 3-39 (42)
333 smart00546 CUE Domain that may 45.5 56 0.0012 24.8 5.0 38 305-343 3-40 (43)
334 KOG0686 COP9 signalosome, subu 45.3 1.1E+02 0.0023 35.3 9.0 118 612-732 137-254 (466)
335 PF13431 TPR_17: Tetratricopep 45.0 16 0.00034 26.4 1.8 23 370-392 12-34 (34)
336 KOG3024 Uncharacterized conser 44.5 2E+02 0.0044 31.6 10.6 63 712-774 90-154 (312)
337 PF15015 NYD-SP12_N: Spermatog 43.9 3.5E+02 0.0075 31.5 12.7 108 620-736 171-291 (569)
338 PF06552 TOM20_plant: Plant sp 42.8 1.3E+02 0.0027 31.0 8.4 72 707-778 25-104 (186)
339 PRK13184 pknD serine/threonine 42.3 1E+02 0.0023 39.6 9.5 94 634-736 484-581 (932)
340 PF07079 DUF1347: Protein of u 42.2 6.4E+02 0.014 29.7 17.2 135 625-771 379-519 (549)
341 PF12854 PPR_1: PPR repeat 41.7 46 0.001 23.9 3.9 27 625-651 7-33 (34)
342 PF14853 Fis1_TPR_C: Fis1 C-te 41.7 45 0.00097 26.9 4.1 27 374-400 4-30 (53)
343 KOG0276 Vesicle coat complex C 41.1 3E+02 0.0066 33.3 12.1 58 702-777 639-696 (794)
344 COG4649 Uncharacterized protei 38.6 4.6E+02 0.0099 27.0 14.7 143 676-834 69-212 (221)
345 PHA02537 M terminase endonucle 37.9 2.9E+02 0.0064 29.5 10.7 56 825-880 165-223 (230)
346 TIGR02710 CRISPR-associated pr 37.6 7E+02 0.015 28.8 15.5 149 621-779 126-278 (380)
347 PF10938 YfdX: YfdX protein; 37.2 3.2E+02 0.0069 27.3 10.3 106 627-735 4-145 (155)
348 PF10255 Paf67: RNA polymerase 37.0 2.3E+02 0.005 32.9 10.4 68 673-740 130-197 (404)
349 PF04348 LppC: LppC putative l 36.9 11 0.00025 45.3 0.0 92 673-772 32-123 (536)
350 PF14561 TPR_20: Tetratricopep 36.3 1.3E+02 0.0029 27.0 6.8 30 706-735 21-50 (90)
351 PF03765 CRAL_TRIO_N: CRAL/TRI 34.8 1E+02 0.0022 24.7 5.3 30 315-345 26-55 (55)
352 PF11207 DUF2989: Protein of u 34.1 2.6E+02 0.0057 29.2 9.3 82 676-767 117-198 (203)
353 PRK12798 chemotaxis protein; R 33.9 8.2E+02 0.018 28.5 21.6 211 673-908 120-348 (421)
354 PRK10941 hypothetical protein; 33.8 1.4E+02 0.0031 32.6 7.9 69 703-777 177-245 (269)
355 PF15015 NYD-SP12_N: Spermatog 33.6 6.2E+02 0.013 29.5 12.6 130 673-814 184-323 (569)
356 KOG1550 Extracellular protein 32.7 4.9E+02 0.011 31.6 13.0 135 722-887 227-372 (552)
357 KOG2053 Mitochondrial inherita 32.7 1.2E+03 0.025 29.9 19.5 86 636-735 20-105 (932)
358 cd02681 MIT_calpain7_1 MIT: do 32.1 1E+02 0.0022 26.9 5.1 35 622-656 3-37 (76)
359 KOG1497 COP9 signalosome, subu 31.9 7.9E+02 0.017 27.7 16.7 109 778-894 94-203 (399)
360 PRK13184 pknD serine/threonine 31.6 1.2E+02 0.0027 39.0 7.8 99 673-776 483-581 (932)
361 KOG3364 Membrane protein invol 31.3 3.6E+02 0.0078 26.5 9.0 67 706-776 31-100 (149)
362 PF14561 TPR_20: Tetratricopep 31.1 1.1E+02 0.0024 27.4 5.4 53 745-797 20-72 (90)
363 COG5187 RPN7 26S proteasome re 31.0 7.7E+02 0.017 27.4 13.6 119 764-893 92-210 (412)
364 KOG0686 COP9 signalosome, subu 30.8 6.5E+02 0.014 29.2 12.3 94 673-771 158-253 (466)
365 PF07163 Pex26: Pex26 protein; 29.9 8E+02 0.017 27.2 12.5 130 635-771 45-182 (309)
366 PF06552 TOM20_plant: Plant sp 29.8 1.6E+02 0.0035 30.2 6.8 80 787-870 25-108 (186)
367 PF03745 DUF309: Domain of unk 29.8 1.7E+02 0.0037 24.4 5.9 55 673-729 7-61 (62)
368 PF13812 PPR_3: Pentatricopept 29.5 1.1E+02 0.0024 21.0 4.2 27 627-653 3-29 (34)
369 TIGR03362 VI_chp_7 type VI sec 28.8 8.5E+02 0.018 27.1 17.5 77 712-791 218-294 (301)
370 KOG3024 Uncharacterized conser 28.6 5.5E+02 0.012 28.3 10.8 100 708-813 47-151 (312)
371 PRK10941 hypothetical protein; 28.0 3E+02 0.0065 30.1 9.1 58 673-738 189-246 (269)
372 PF13041 PPR_2: PPR repeat fam 27.5 1.1E+02 0.0024 23.6 4.3 29 626-654 4-32 (50)
373 KOG1920 IkappaB kinase complex 27.3 1.6E+03 0.034 29.8 16.1 92 621-734 935-1026(1265)
374 smart00671 SEL1 Sel1-like repe 26.8 1.1E+02 0.0024 21.4 3.9 32 830-863 2-33 (36)
375 KOG4642 Chaperone-dependent E3 26.3 3.4E+02 0.0073 29.3 8.5 89 638-740 23-111 (284)
376 cd02683 MIT_1 MIT: domain cont 26.0 1.5E+02 0.0032 25.9 5.1 35 622-656 3-37 (77)
377 TIGR00756 PPR pentatricopeptid 25.7 1.2E+02 0.0026 20.6 3.8 26 628-653 3-28 (35)
378 PF03745 DUF309: Domain of unk 25.5 1.2E+02 0.0026 25.3 4.3 56 712-769 4-61 (62)
379 PF08285 DPM3: Dolichol-phosph 25.4 1.1E+02 0.0023 27.8 4.2 34 370-403 49-82 (91)
380 PRK06770 hypothetical protein; 25.2 1.6E+02 0.0035 30.0 5.8 55 293-350 88-144 (180)
381 COG4976 Predicted methyltransf 25.1 1.3E+02 0.0029 32.0 5.4 54 675-736 5-58 (287)
382 TIGR01716 RGG_Cterm transcript 24.9 4.1E+02 0.0089 27.5 9.4 80 706-785 127-206 (220)
383 COG3107 LppC Putative lipoprot 24.5 8.8E+02 0.019 29.2 12.2 86 673-767 71-156 (604)
384 PF12854 PPR_1: PPR repeat 24.3 1.2E+02 0.0027 21.7 3.6 27 707-733 7-33 (34)
385 KOG0890 Protein kinase of the 24.3 1.2E+03 0.026 33.3 14.9 111 704-822 1667-1788(2382)
386 KOG1766 Enhancer of rudimentar 23.8 1.6E+02 0.0035 26.7 4.8 49 58-111 13-66 (104)
387 KOG2659 LisH motif-containing 23.6 5.4E+02 0.012 27.5 9.5 103 630-737 31-133 (228)
388 TIGR00823 EIIA-LAC phosphotran 23.0 1.6E+02 0.0035 27.1 5.0 34 623-656 15-48 (99)
389 PF05470 eIF-3c_N: Eukaryotic 22.9 5.1E+02 0.011 31.8 10.6 84 603-693 439-528 (595)
390 cd00215 PTS_IIA_lac PTS_IIA, P 22.8 1.7E+02 0.0036 26.9 5.0 34 623-656 13-46 (97)
391 PF01535 PPR: PPR repeat; Int 22.4 1.2E+02 0.0026 20.2 3.2 25 628-652 3-27 (31)
392 COG4941 Predicted RNA polymera 22.0 7.7E+02 0.017 28.0 10.6 130 634-778 265-396 (415)
393 PRK09591 celC cellobiose phosp 21.9 1.8E+02 0.0038 27.1 5.0 34 623-656 18-51 (104)
394 PF02255 PTS_IIA: PTS system, 21.7 1.9E+02 0.004 26.5 5.1 34 623-656 12-45 (96)
395 PF10938 YfdX: YfdX protein; 21.5 2.1E+02 0.0046 28.5 5.9 103 673-775 10-145 (155)
396 PRK10454 PTS system N,N'-diace 21.2 1.8E+02 0.0039 27.6 5.0 34 623-656 29-62 (115)
397 KOG0276 Vesicle coat complex C 21.0 7E+02 0.015 30.5 10.6 78 628-735 617-694 (794)
398 PF11207 DUF2989: Protein of u 20.8 4E+02 0.0087 27.9 7.9 78 722-809 121-198 (203)
399 COG5110 RPN1 26S proteasome re 20.5 1.4E+03 0.031 27.6 12.8 59 860-918 272-337 (881)
400 KOG3364 Membrane protein invol 20.5 5.5E+02 0.012 25.3 8.1 71 827-904 30-100 (149)
401 PF04781 DUF627: Protein of un 20.4 7.3E+02 0.016 23.4 11.2 26 631-656 2-27 (111)
402 TIGR01716 RGG_Cterm transcript 20.3 7.3E+02 0.016 25.6 10.2 71 673-745 136-206 (220)
No 1
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=348.88 Aligned_cols=462 Identities=24% Similarity=0.192 Sum_probs=402.6
Q ss_pred hHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCC
Q 002424 278 NWQMQGYLMEQADAIEKHG-SSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFD 356 (924)
Q Consensus 278 ~~~~e~~l~~qi~~l~~~~-~~~p~~~l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~ 356 (924)
++|++.|+..|...++.++ ++.+|-++++.++.+.+..|++. +||+.|.|.+|+.|+.++..+|+++||.+...
T Consensus 18 ~kqa~fF~~~q~~ll~n~elkal~p~~lqk~v~~ll~vlp~~~-p~~l~y~n~lrv~d~~s~l~sL~e~~dr~~l~---- 92 (482)
T KOG4322|consen 18 NKQATFFTPHQLTLLLNIELKALRPIQLQKCVPFLDLVLPYFN-PNDLQYQNLLRVHDITSHLPSLIEEYDRYSLL---- 92 (482)
T ss_pred chhhhhccHHHHHHHHhhhhhccCchhhhcCchHHHHhccccC-hhhhccchhhHHHHHHhhhhHHHHHHHhhhhh----
Confidence 8999999999999999998 79999999999999999999999 99999999999999999999999999998521
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcccCcccCcCCCC
Q 002424 357 FAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSS 436 (924)
Q Consensus 357 r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe~~D~~cl~~~l~wl~~l~~~~~~a~~~~~~g~~ 436 (924)
..+| |+++|+|.+|..||| ..++.|||..|||.+|+.|++++..|.+.+-++.+.
T Consensus 93 ----------eegy-y~~~nla~Lhe~fgh----l~al~eai~~aqe~~dh~~l~~~~~w~i~Lr~~~~~---------- 147 (482)
T KOG4322|consen 93 ----------EEGY-YSLHNLADLHEIFGH----LGALIEGIYDAQEEADHMLLSSSSLWSIFLRKCVVE---------- 147 (482)
T ss_pred ----------hhhH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHccchhhHhccchHHHHHHhhhhh----------
Confidence 1355 999999999999999 889999999999999999999999999976654431
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccCCCCccCCCcccccccCCchhHHHHHHh
Q 002424 437 YSPITSIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRL 516 (924)
Q Consensus 437 ~~~~~~~~~~~~~~~q~l~lL~~~~~ra~e~~~~~L~s~~~l~~ak~~l~~g~~~~~~~g~~~~~~~~~~~a~~~e~l~~ 516 (924)
..+.+++++-++.
T Consensus 148 -------------------seq~Sv~~a~~f~------------------------------------------------ 160 (482)
T KOG4322|consen 148 -------------------SEQFSVEQAVQFF------------------------------------------------ 160 (482)
T ss_pred -------------------HHHHHHHHhhhhh------------------------------------------------
Confidence 1233333333211
Q ss_pred hhhcccccccccccccCCCccchHHhhhccCCCCcchhhhccccCCCccccccccCCCCcchhhhhhhhhHHHHHHHHHH
Q 002424 517 ASHLISDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWE 596 (924)
Q Consensus 517 ~~~l~~d~~~~~~~~~~~g~~~~~~l~nl~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~l~~l~g~~~~l~a~~W~ 596 (924)
..+|++.+.+++-. ..++ .+|.
T Consensus 161 ----------------------~s~Lq~~~~~~~fq------------------------~~a~------------~~W~ 182 (482)
T KOG4322|consen 161 ----------------------KSFLQYRAPSMDFQ------------------------HEAI------------EFWK 182 (482)
T ss_pred ----------------------HHHHHhhccccCcc------------------------hhhh------------HHHH
Confidence 23444544432200 0111 2999
Q ss_pred hhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch-HHHHHHHh-hHHHH
Q 002424 597 AYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-RILLLKLQ-LLHER 674 (924)
Q Consensus 597 ~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~-~~~~l~l~-l~~~~ 674 (924)
.||...|+.. .++......+++.+|..++.+|-...+...+++ +++||..... ..|++.-+ .....
T Consensus 183 lYGrhemA~~-----------~s~~~llq~al~s~a~~~a~qg~~ql~~v~L~h-Kqrfp~~~~~a~~wml~d~~~v~~~ 250 (482)
T KOG4322|consen 183 IYGRHELANL-----------ASNKTLLQLALGSIAVSRSSQGIEQLTQVQLEH-KQRFPCALPLAMKWMLHDLLEVEEN 250 (482)
T ss_pred HhchhHHHHh-----------hcchhHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHHHHh
Confidence 9999999982 224557789999999999999999999999999 9999987774 46887633 44478
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 754 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la 754 (924)
.+..++|..|...+... |.....+..++.+.++.+..++++|.++++.++..|.........+.++..+|
T Consensus 251 ~~~~~~~h~al~~~~g~----------d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~a 320 (482)
T KOG4322|consen 251 NLNTSYYHKALNSWFGG----------DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIA 320 (482)
T ss_pred hhhhhHHHHHHHHhhcc----------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 88999999887654433 55568899999999999999999999999999999999889999999999999
Q ss_pred HHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHH
Q 002424 755 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 834 (924)
Q Consensus 755 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~ 834 (924)
+++.+.|.+..+++++.+++..+.++.+++.++.+.+.||..|+.+|.+ ++|+.++..++|.|+.+|..+++|++++.
T Consensus 321 e~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~p--k~Al~lLh~a~h~Il~~GgL~drara~fv 398 (482)
T KOG4322|consen 321 EARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSP--KAALPLLHTAVHLILVQGGLDDRARAIFV 398 (482)
T ss_pred HHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCCh--HHHHHHHHhhhhHHHhccchhhcceeEEE
Confidence 9999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhccCCC
Q 002424 835 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALENENRQ 914 (924)
Q Consensus 835 LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~~~~~ 914 (924)
.++|+++.+.+...++.+.+.+++++|...|.++++.++..+|.|.+|..|+.+||.++||++|..||+.-..+|+ |+
T Consensus 399 fanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~--pr 476 (482)
T KOG4322|consen 399 FANCTLAFALSCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL--PR 476 (482)
T ss_pred EEeeeecchhhhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC--cc
Confidence 9999999877666788999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCCCCC
Q 002424 915 DEVDPL 920 (924)
Q Consensus 915 ~~~~~~ 920 (924)
+.+.|+
T Consensus 477 ~~l~n~ 482 (482)
T KOG4322|consen 477 WLLGNP 482 (482)
T ss_pred ccccCC
Confidence 988764
No 2
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=99.83 E-value=1.2e-20 Score=171.79 Aligned_cols=93 Identities=44% Similarity=0.759 Sum_probs=83.7
Q ss_pred HHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 002424 322 HFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLS 401 (924)
Q Consensus 322 ~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~A 401 (924)
||++|+++|+.|||++|+|+||+|||+.....+ .+...+++||++|+|.+|..||++++|+.+++|||++|
T Consensus 1 ~~l~~~~~~~~~dy~~A~d~L~~~fD~~~~~~~---------~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 1 HYLRYLNALRSGDYSEALDALHRYFDYAKQSNN---------SSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc---------chhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999874321 01124899999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHh
Q 002424 402 QQHSNDTCLAYTLAAISNLLSE 423 (924)
Q Consensus 402 qe~~D~~cl~~~l~wl~~l~~~ 423 (924)
|+++|..||++|+.|++++.++
T Consensus 72 re~~D~~~l~~al~~~~~l~~~ 93 (94)
T PF12862_consen 72 RENGDRRCLAYALSWLANLLKK 93 (94)
T ss_pred HHHCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998754
No 3
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.71 E-value=2.4e-16 Score=169.72 Aligned_cols=272 Identities=14% Similarity=0.055 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
...+++.||.+|...++|+.|+++..+=+.+.+..++.-.-+ .+-++ +...-..|+|++|..++.+-+.++++++ |
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL-GNtlKv~G~fdeA~~cc~rhLd~areLg--D 130 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL-GNTLKVKGAFDEALTCCFRHLDFARELG--D 130 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc-cchhhhhcccchHHHHHHHHhHHHHHHh--H
Confidence 346789999999999999999999888777666666532100 01011 1233468999999999999999999999 9
Q ss_pred cchHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 703 MDLKTEASLRHARTLLAANQ--------------------FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~--------------------~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+.++..++++++.++.++|+ ++.|.+++.+-|++.+..||+....|+.-.+|..|.-.|+
T Consensus 131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGd 210 (639)
T KOG1130|consen 131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGD 210 (639)
T ss_pred HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeecc
Confidence 99999999999999999886 4568888888899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
++.|+.....=|.++++.|++--+-+|.-+||..|.-+|.. +.|.+++...+.++.+.|++..+|+..+.||.+|--
T Consensus 211 f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f--e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl- 287 (639)
T KOG1130|consen 211 FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF--ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL- 287 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc--HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999999999887
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
..++.+|+.|+.+=+++++.++++.++.++.+-||.+|.++|....+-..+....+..-
T Consensus 288 -----l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 288 -----LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999988777776666543
No 4
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.68 E-value=1.7e-15 Score=163.23 Aligned_cols=272 Identities=15% Similarity=0.096 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
|.-+.-=|-.++..|++......++.|.+.-.+ .-...-+|--|+. ..++..++|.+|.++...=+.+++.++ |..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLG-NAyfyL~DY~kAl~yH~hDltlar~lg--dkl 92 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLG-NAYFYLKDYEKALKYHTHDLTLARLLG--DKL 92 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhc-chhhhHhhHHHHHhhhhhhHHHHHHhc--chh
Confidence 555555566788899999999999988865221 0111223332333 688999999999999998888888888 889
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh--------------------h
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA--------------------V 764 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~--------------------~ 764 (924)
+++.+.-++|..+..+|+|++|+.+..+-|.++++.||+..+.|++.++|.||...|.. +
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877652 4
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
.|...+++-|++.+..|++.-..++.-+||.+|.-+|+. ++|+...+.-|.+..++||+...-+|+..||.||+-
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf--~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif--- 247 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDF--DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF--- 247 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccH--HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh---
Confidence 566778888999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 908 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~ 908 (924)
.|.++.|+++++.++..+..++++.-+++.-|-||..|--+-+...+.++-.+...+-..+
T Consensus 248 ---lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 248 ---LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred ---hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988888777555444444433
No 5
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.52 E-value=5.7e-12 Score=134.70 Aligned_cols=287 Identities=13% Similarity=0.044 Sum_probs=235.9
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH---HHHHHhhHHHHHHHcCCHHHHHHHHH
Q 002424 613 TCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI---LLLKLQLLHERSLHRGHLKLAQKVCD 689 (924)
Q Consensus 613 ~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~---~~l~l~l~~~~al~~G~~~~A~~~l~ 689 (924)
.++.+..+.+-.+.++.||+...-..-+|..++.+-+.-... |..-..+. ..+. + ...++..|-+..+.+.++
T Consensus 71 ~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~--~-~~Ahlgls~fq~~Lesfe 146 (518)
T KOG1941|consen 71 DTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLS--M-GNAHLGLSVFQKALESFE 146 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhh--H-HHHhhhHHHHHHHHHHHH
Confidence 345555566778899999999988888888887776644432 21111111 1111 1 167788999999999999
Q ss_pred HHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhH----HHHHHHHHHHHHhcCChhh
Q 002424 690 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN----ASVLLLLAEIHKKSGNAVL 765 (924)
Q Consensus 690 ~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~----a~al~~la~i~~~~G~~~~ 765 (924)
.+..++...+ |+..+..+...++.+.....|++.|+-+...+.++.+..+...+. .-++..++-.+...|+...
T Consensus 147 ~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd 224 (518)
T KOG1941|consen 147 KALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD 224 (518)
T ss_pred HHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc
Confidence 9999988777 999999999999999999999999999999999999887644443 4478889999999999999
Q ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 766 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 766 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
|.+...+|..++-++|++...++.++.+|++|...|+. ++|..-+|++|-.....||+..+-.++...|||.-....-
T Consensus 225 A~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~--e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~ 302 (518)
T KOG1941|consen 225 AMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL--ERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ 302 (518)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH--hHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999998871100
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002424 846 SVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 908 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~ 908 (924)
. .+.--+|+++-+++++++.+||+...+..+...+|.+|+..|+.++-+.....+-++..+.
T Consensus 303 ~-k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 303 N-KICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEET 364 (518)
T ss_pred h-cccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 0 1223469999999999999999999999999999999999999887666555565555543
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.48 E-value=3.9e-10 Score=146.69 Aligned_cols=482 Identities=12% Similarity=0.016 Sum_probs=286.8
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 002424 282 QGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPS 361 (924)
Q Consensus 282 e~~l~~qi~~l~~~~~~~p~~~l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~ 361 (924)
..+|-.|+...+..+ -++..++.+.++....|+=|.+.+....-+++.||+..|...+.+-......... -+...
T Consensus 28 ~~~Ll~q~~~~~~~~---~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~-~~~~~- 102 (1157)
T PRK11447 28 QQQLLEQVRLGEATH---REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNA-YRSSR- 102 (1157)
T ss_pred HHHHHHHHHHHHhhC---ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChH-HHHHH-
Confidence 445777887766544 2356677888888899999999999999999999999999999998877632100 00000
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhcccCcccCcCCCCCCCCc
Q 002424 362 IGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLSEIGISTTTGILGSSYSPIT 441 (924)
Q Consensus 362 ~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe~~D~~cl~~~l~wl~~l~~~~~~a~~~~~~g~~~~~~~ 441 (924)
..-.....-.-..|.+|.+...-|++++|+..++.++... .+...++ +.+...+....+
T Consensus 103 ~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~---p~~~~la--~~y~~~~~~~~g---------------- 161 (1157)
T PRK11447 103 TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA---PPELDLA--VEYWRLVAKLPA---------------- 161 (1157)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC---CCChHHH--HHHHHHHhhCCc----------------
Confidence 0000000011135888999999999999999999998642 2222222 221111211111
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccCCCCccCCCcccccccCCchhHHHHHHhhhhcc
Q 002424 442 SIGTTLSVQQQLFVLLKESFRRAESLKLKRLVAANHLAMAKFDLTHVQRPLLSFGPKTAMRLRTCPTNVCKELRLASHLI 521 (924)
Q Consensus 442 ~~~~~~~~~~q~l~lL~~~~~ra~e~~~~~L~s~~~l~~ak~~l~~g~~~~~~~g~~~~~~~~~~~a~~~e~l~~~~~l~ 521 (924)
..++++..|++.++.. |.- ....+.+++.....|+. ..+.+.+.+.....
T Consensus 162 -------~~~~A~~~L~~ll~~~-----P~~-~~~~~~LA~ll~~~g~~-----------------~eAl~~l~~~~~~~ 211 (1157)
T PRK11447 162 -------QRPEAINQLQRLNADY-----PGN-TGLRNTLALLLFSSGRR-----------------DEGFAVLEQMAKSP 211 (1157)
T ss_pred -------cHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHccCCH-----------------HHHHHHHHHHhhCC
Confidence 1267888888755432 221 12334455544444442 44555555531111
Q ss_pred cccccccccccCCCccchHHhhhccCCCCcchhhhccccCCCccccccccCCCCcchhhhhhhhhHHHHHHHHHHhhCch
Q 002424 522 SDFVSESSTMTTDGAFSTSWLKNLQKPMGSLVLTQENVSGKDSNAFQFCAQPSSIPGSVLQLVGSSYLLRATAWEAYGSA 601 (924)
Q Consensus 522 ~d~~~~~~~~~~~g~~~~~~l~nl~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~l~~l~g~~~~l~a~~W~~~G~~ 601 (924)
.. .......+++.+.... ........-...+..+...
T Consensus 212 ~~----------~~~aa~~~~~~l~~~~---------------------------------~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 212 AG----------RDAAAQLWYGQIKDMP---------------------------------VSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred Cc----------hHHHHHHHHHHHhccC---------------------------------CChhhHHHHHHHHHHCCCc
Confidence 00 0000000111110000 0000011111111222111
Q ss_pred H-HHHhHHHH--HHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc
Q 002424 602 P-LTRVNTLI--YATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR 678 (924)
Q Consensus 602 ~-ls~~~~~~--~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~ 678 (924)
. .......+ ......+.. .....+|..+...|++++|...++++.+..|..... ...+. ..++..
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~------~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a-~~~Lg-----~~~~~~ 316 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPA------FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEA-LGALG-----QAYSQQ 316 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcc------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHH-----HHHHHc
Confidence 1 00000000 000111111 112345788889999999999999999887643221 11122 677899
Q ss_pred CCHHHHHHHHHHHhhhhhccCCCCc------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 679 GHLKLAQKVCDELGVMASSVTGVDM------DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 679 G~~~~A~~~l~~ll~l~~~~~~~D~------~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
|++++|...+++++.+.+.....+. ..........+..+...|++++|++.+++++... + ....++..
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P-~~~~a~~~ 390 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----N-TDSYAVLG 390 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHH
Confidence 9999999999999886442210000 0012234566888999999999999999998852 2 23567889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh---CCHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH---GGLELRA 829 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~---gd~~~~A 829 (924)
+|.++...|++++|+..+.+++.+.-.. ..++..|+.++.. +.. ++|+.++++..+.-... ....+..
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~------~~a~~~L~~l~~~-~~~--~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGN------TNAVRGLANLYRQ-QSP--EKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHh-cCH--HHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999875321 3456678888754 455 89999887654432111 0122334
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
..+..+|.++.. .|++++|+.++++|++..-. -..+++.+|.+|...|+.+++.......
T Consensus 462 ~~~~~~a~~~~~------~g~~~eA~~~~~~Al~~~P~------~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 462 DRLAQQAEALEN------QGKWAQAAELQRQRLALDPG------SVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567778888988 89999999999999986421 2347889999999999998876654443
No 7
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.48 E-value=2.6e-11 Score=140.56 Aligned_cols=271 Identities=17% Similarity=0.090 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCchH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
.....+.++|+..++.+|+|+.|...+++|.+.... .+... .....+......++..+++.+|..+|..++++....-
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 355677888999999999999999999999987432 23211 1111122223788999999999999999999987776
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccchhH-HHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQVEN-ASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~~~~-a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.|-...+.++.+++.++...|+|.+|..++++++.+... .+....+ +..+..++.++...++++.|..++.+++.+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 6676778999999999999999999999999999998876 3333333 5578999999999999999999999999998
Q ss_pred H-HhCCcH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC--HHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 778 Q-LLNLDL-LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 778 ~-~~g~~~-~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd--~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
. ..|-.. ..+....+||.++..+|.. ++|++++++|+...++.+. ....+..+..||..+.. ...+.+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~--~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~------~k~~~~ 427 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKY--KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE------LKKYEE 427 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH------hcccch
Confidence 4 456555 8899999999999999998 9999999999999999877 67889999999988877 788889
Q ss_pred HHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVLEDH-ELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~-~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
|-..+.+|..+...+|.- ...--++..||.+|+.+|+.+.+.+....
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999777654 47888999999999999999998874443
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-11 Score=139.60 Aligned_cols=260 Identities=17% Similarity=0.098 Sum_probs=208.7
Q ss_pred HHHHHhhCchHHHHhHHHHHHhhcCCCC-ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 592 ATAWEAYGSAPLTRVNTLIYATCFSDGS-SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 592 a~~W~~~G~~~ls~~~~~~~~~~~~~~~-~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
+.+|..+|+.-++..........|.+.. -.-....++.|||.++-..+.|++|...+++|+..-|-..- .++-+.
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-a~gNla--- 293 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-AHGNLA--- 293 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-hccceE---
Confidence 4578888888777766544444444311 11145789999999999999999999999998865432111 011111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
-.+..+|..+.|...+++++++-+ . -..+..+++..+...|+-.||.+++.++|.+|-. .++++
T Consensus 294 --~iYyeqG~ldlAI~~Ykral~~~P-------~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~------hadam 357 (966)
T KOG4626|consen 294 --CIYYEQGLLDLAIDTYKRALELQP-------N-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN------HADAM 357 (966)
T ss_pred --EEEeccccHHHHHHHHHHHHhcCC-------C-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc------cHHHH
Confidence 467789999999999999998632 1 4578999999999999999999999999997654 48999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRAR 830 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~ 830 (924)
.++|.|+...|..+.|..++..|++..- .-|.+..+||.++.+.|.. ++|+.++.+++.+-- .-|.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl--~~Ai~~YkealrI~P------~fAd 423 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNL--DDAIMCYKEALRIKP------TFAD 423 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccH--HHHHHHHHHHHhcCc------hHHH
Confidence 9999999999999999999999988764 3467788999999999999 999999999976632 4577
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
+|..+|.++-. .|+...|+.++.+|..+ ...-+++...||.+|...|..+++.+.
T Consensus 424 a~~NmGnt~ke------~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~s 478 (966)
T KOG4626|consen 424 ALSNMGNTYKE------MGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQS 478 (966)
T ss_pred HHHhcchHHHH------hhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHH
Confidence 99999999998 89999999999988653 356688999999999999999986653
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=4.3e-10 Score=137.06 Aligned_cols=212 Identities=13% Similarity=-0.021 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|+|++|...++.+.+..|...+ .+.. + +..++..|++.+|...+++++.+.+ .
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~--~~~~---l-g~~~~~~g~~~~A~~~~~kal~l~P-------~ 431 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD--IYYH---R-AQLHFIKGEFAQAGKDYQKSIDLDP-------D 431 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHH---H-HHHHHHcCCHHHHHHHHHHHHHcCc-------c
Confidence 467889999999999999999999999887553221 2211 1 1577889999999999999998632 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...+|.++...|++++|+..+++++... .....++..+|.++...|++++|+..+.+|+.+..+.....
T Consensus 432 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~ 504 (615)
T TIGR00990 432 -FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY 504 (615)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence 34668899999999999999999999998742 22366788899999999999999999999999875433322
Q ss_pred HHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELW-LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 ~~A~al~~La~l~-~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
.....+...+.++ ...|+. ++|+.++++++..- - .-..++..+|+++.. .|++++|+.++++|.+
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~--~eA~~~~~kAl~l~--p----~~~~a~~~la~~~~~------~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDF--IEAENLCEKALIID--P----ECDIAVATMAQLLLQ------QGDVDEALKLFERAAE 570 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhcC--C----CcHHHHHHHHHHHHH------ccCHHHHHHHHHHHHH
Confidence 2222223333333 336776 99999999998752 1 123478889999999 8999999999999999
Q ss_pred HHHhhcC
Q 002424 864 ELQVLED 870 (924)
Q Consensus 864 ~f~~l~~ 870 (924)
+.+..+.
T Consensus 571 l~~~~~e 577 (615)
T TIGR00990 571 LARTEGE 577 (615)
T ss_pred HhccHHH
Confidence 9876554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.42 E-value=1.4e-09 Score=141.42 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
..++..+|.++.+.|++++|+..+.+++.+.-. ...++..++.++...|+. ++|++.++.++..-- .
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~--~eA~~~l~~ll~~~p--~--- 669 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDL--AAARAQLAKLPATAN--D--- 669 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCH--HHHHHHHHHHhccCC--C---
Confidence 346788999999999999999999999886421 246788899999999998 999999997764311 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
...++..+|.++.+ .|++++|+.++++++.....-......+.++..+|.++...|+++++.+.
T Consensus 670 -~~~~~~~la~~~~~------~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 670 -SLNTQRRVALAWAA------LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred -ChHHHHHHHHHHHh------CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22356678888888 89999999999999887644333333567788889999999999997764
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=3.8e-09 Score=132.57 Aligned_cols=184 Identities=20% Similarity=0.124 Sum_probs=103.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++.+|...+.++....+ + . .....++.++...|++++|.+.+++++... .....++..
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~-----~--~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~ 775 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAP-----S--S--QNAIKLHRALLASGNTAEAVKTLEAWLKTH------PNDAVLRTA 775 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCC-----C--c--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 344556666666666666655311 1 1 344555666666666666666666655421 112455666
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++.+|+..+.+++...- ....+...++.++...|. .+|+.++++++...-.. ..++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~---~~A~~~~~~~~~~~~~~------~~~~ 840 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAP------DNAVVLNNLAWLYLELKD---PRALEYAEKALKLAPNI------PAIL 840 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCC------cHHH
Confidence 66666666666666666666655421 123445556666666665 34666666666542211 1234
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa 898 (924)
..+|.++.. .|++++|+.++++|++.... ...++..++.++...|+.+++.+..
T Consensus 841 ~~~~~~~~~------~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 841 DTLGWLLVE------KGEADRALPLLRKAVNIAPE------AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456666666 67777777777777664321 3456666777777777766655543
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=4.5e-09 Score=131.86 Aligned_cols=230 Identities=17% Similarity=0.030 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+...|++++|...++++.+..+..... + . .++ ..+...|++++|...++++....+ +
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~-~--~la-~~~~~~g~~~~A~~~~~~~~~~~~-----~--- 531 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPA--A-A--NLA-RIDIQEGNPDDAIQRFEKVLTIDP-----K--- 531 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHH--H-H--HHH-HHHHHCCCHHHHHHHHHHHHHhCc-----C---
Confidence 567888899999999999999999888765432211 1 1 111 566788999999999998877422 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...++.++...|++++|...+++++... .........++.++...|++.+|+..+.+++.... .
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--- 599 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN------PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP---D--- 599 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---C---
Confidence 35677888899999999999999998887632 22345667889999999999999998888765321 1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
...+...+|.++...|+. ++|+..++.++..-- ....++..+|.++.. .|++++|+.+++++....
T Consensus 600 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDL--NKAVSSFKKLLALQP------DSALALLLLADAYAV------MKNYAKAITSLKRALELK 665 (899)
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHHHHHHHHHHH------cCCHHHHHHHHHHHHhcC
Confidence 135677789999889987 999999998875421 123567788988888 899999999999988753
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
. .-..+...++.++...|+.+++.+.....
T Consensus 666 ~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 666 P------DNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 12357788899999999988866554443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.40 E-value=2.8e-11 Score=136.64 Aligned_cols=200 Identities=18% Similarity=0.053 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.+++|+|.++-.+|..|-|+..++++.++-|...+.. .-++ ...-..|+.++|.+++.+++.+.+.
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay-~Nla-----nALkd~G~V~ea~~cYnkaL~l~p~------ 352 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAY-NNLA-----NALKDKGSVTEAVDCYNKALRLCPN------ 352 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHH-hHHH-----HHHHhccchHHHHHHHHHHHHhCCc------
Confidence 368999999999999999999999999999766554421 1111 2223569999999999999998442
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
.+.+.+++|.++..+|..++|..++..+++..-+ -+.+..++|.|+.+.|+...|+.++.+|+.+.
T Consensus 353 --hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------ 418 (966)
T KOG4626|consen 353 --HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------ 418 (966)
T ss_pred --cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------
Confidence 6788999999999999999999999999885433 37789999999999999999999999999885
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
..-|.++.++|.++-.+|+. +.|+..+++++-. .. .-|.|+..||-.|.. .|..++|+..+++|+.
T Consensus 419 P~fAda~~NmGnt~ke~g~v--~~A~q~y~rAI~~----nP--t~AeAhsNLasi~kD------sGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 419 PTFADALSNMGNTYKEMGDV--SAAIQCYTRAIQI----NP--TFAEAHSNLASIYKD------SGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHHHhcchHHHHhhhH--HHHHHHHHHHHhc----Cc--HHHHHHhhHHHHhhc------cCCcHHHHHHHHHHHc
Confidence 34678999999999999998 9999999988644 22 346788899999988 8999999999999986
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.37 E-value=2.3e-09 Score=130.81 Aligned_cols=238 Identities=14% Similarity=0.001 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++..+|..+...|++++|+..++.+.+..|..... +. . ++ ..++..|++++|...+++++.+.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~~-~--la-~~~~~~g~~~eA~~~~~~al~~~------- 395 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--YI-K--RA-SMNLELGDPDKAEEDFDKALKLN------- 395 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HH-H--HH-HHHHHCCCHHHHHHHHHHHHHhC-------
Confidence 556789999999999999999999999999876643221 11 1 11 56678999999999999998852
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
|. ...+++.+|.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++...-
T Consensus 396 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P---- 464 (615)
T TIGR00990 396 SE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP---- 464 (615)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----
Confidence 21 35788999999999999999999999998742 22356788999999999999999999999987532
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH-HhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA-KCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA-r~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
....+...+|.++..+|+. ++|+..+++++...............+...+ ..+.. .|++.+|+.++++|
T Consensus 465 --~~~~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~------~~~~~eA~~~~~kA 534 (615)
T TIGR00990 465 --EAPDVYNYYGELLLDQNKF--DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW------KQDFIEAENLCEKA 534 (615)
T ss_pred --CChHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH------hhhHHHHHHHHHHH
Confidence 1245677899999999998 9999999999887544333222222222222 22222 58899999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
+..- + .-..++..+|.++...|+.++|.++...
T Consensus 535 l~l~-----p-~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 535 LIID-----P-ECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HhcC-----C-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8752 2 1223678899999999999987664333
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=1.2e-09 Score=139.10 Aligned_cols=297 Identities=14% Similarity=0.033 Sum_probs=212.9
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK 667 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~ 667 (924)
....+.+....|...-+.......+.... .........+...+|..+...|++++|...++++...++..+........
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 33445555555554444333332222111 12223356778899999999999999999999999988877664422212
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 668 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 668 l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
+......++.+|++++|...+++++.++...+..+......+...++.++...|++++|.+.+++++...+..+ ....+
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~ 612 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQL 612 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHH
Confidence 22222678899999999999999999877655323223345566789999999999999999999999877655 34566
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK-ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~-A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
.++..+|.++...|++..|...+.+++.+....+..... ..........+...|.. ++|...+++..+... +...
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~l~~~~~~~~--~~~~ 688 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK--EAAANWLRQAPKPEF--ANNH 688 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH--HHHHHHHHhcCCCCC--ccch
Confidence 788889999999999999999999999887665432211 11111122444557777 888888877765322 2223
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.....+..+|+++.. .|++++|+..+++|++.++..+.+....+++..+|.++...|+.+++.+
T Consensus 689 ~~~~~~~~~a~~~~~------~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 689 FLQGQWRNIARAQIL------LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred hHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333445678888888 8999999999999999999999999999999999999999999887655
No 16
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.35 E-value=9.9e-11 Score=125.33 Aligned_cols=257 Identities=17% Similarity=0.129 Sum_probs=218.4
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhcc
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~ 698 (924)
+..++.+.+..+..++...|+|.+++..--.....|.+..++.....+ +++. .-....-++.++..+....+.+ +
T Consensus 38 ~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnla-r~~e~l~~f~kt~~y~k~~l~l-p-- 113 (518)
T KOG1941|consen 38 DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLA-RSNEKLCEFHKTISYCKTCLGL-P-- 113 (518)
T ss_pred HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHhcC-C--
Confidence 345777888899999999999999988766666677766665533322 3332 3444566788888888877775 2
Q ss_pred CCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 699 TGVDM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 699 ~~~D~-~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.++ .....+...++..++-+|.|+.+++.++.++.++.+.+|+-.+.++-..+|.++.+..++++|+.+...|+++.
T Consensus 114 -gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 114 -GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred -CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 2232 33557778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCc----HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 778 QLLNLD----LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 778 ~~~g~~----~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
+..+.. -.++.++.+|+-.+...|.. -.|.+..++++-+.+++||+...|+....+|..|+. .|+.+.
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~L--gdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~------~gd~e~ 264 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRL--GDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS------RGDLER 264 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh------cccHhH
Confidence 998854 45788999999999999999 999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 854 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
|-.-+++|......++|+-++-+++...|.....+.
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r 300 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLR 300 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887655443
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.30 E-value=6e-09 Score=127.59 Aligned_cols=97 Identities=10% Similarity=0.030 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 002424 282 QGYLMEQADAIEKHGSSFSLNAFELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPS 361 (924)
Q Consensus 282 e~~l~~qi~~l~~~~~~~p~~~l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~ 361 (924)
+.++.+-+..+++.....- ...+..+...+|+-+.++|+--...+..|++..|++.+.+--...-
T Consensus 43 ~~~~~~~~~~~~~g~~~~A----~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P----------- 107 (656)
T PRK15174 43 QNIILFAIACLRKDETDVG----LTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV----------- 107 (656)
T ss_pred cCHHHHHHHHHhcCCcchh----HHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-----------
Confidence 4444555555554332222 2366777788999999999998999999999999999888655432
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 002424 362 IGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAVCL 400 (924)
Q Consensus 362 ~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai~~ 400 (924)
..--+..++|.++..-|.+++|+..+++++.+
T Consensus 108 -------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l 139 (656)
T PRK15174 108 -------CQPEDVLLVASVLLKSKQYATVADLAEQAWLA 139 (656)
T ss_pred -------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11236788999999999999999999999876
No 18
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.29 E-value=1.1e-09 Score=127.29 Aligned_cols=239 Identities=15% Similarity=0.052 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhcc-Cc-hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SK-SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~-~~-~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.+.++.++|..+..+++|++|..+++.|+.++... |. +......+..+...+..+|++++|..+++++..+.......
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 34444579999999999999999999999986643 32 22222222322267889999999999999999998775545
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccch-hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~~-~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...-.+..+...+.++..++++++|..++..++.+... .|... ..+....++|.++...|++..|.+.+..|+.+.++
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~ 399 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE 399 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 55557788899999999999999999999999987763 33333 56778999999999999999999999999999988
Q ss_pred hCC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH-HHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 780 LNL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE-LRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 780 ~g~--~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~-~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
.+. ++..+..+..||..+.+++.. .+|-.+++++..+...+|.-. ..-..|..||.+|.+ .|+++.|.+
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~--~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~------~g~~e~a~~ 471 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKY--EEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA------QGNYEAAEE 471 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH------cccHHHHHH
Confidence 777 788899999999999999998 999999999999998887766 677789999999999 999999999
Q ss_pred HHHHHHHHHHhhcC
Q 002424 857 PLRQASEELQVLED 870 (924)
Q Consensus 857 ~L~~A~~~f~~l~~ 870 (924)
+.+++..+-+....
T Consensus 472 ~~~~~~~~~~~~~~ 485 (508)
T KOG1840|consen 472 LEEKVLNAREQRLG 485 (508)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999877765544
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=2.3e-08 Score=127.46 Aligned_cols=268 Identities=12% Similarity=0.027 Sum_probs=205.4
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC-
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT- 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~- 699 (924)
.+..+..+...+..+...|+++.+...++.+-... ...+....... . ..++..|++++|..++.++.......+
T Consensus 370 ~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~---a-~~~~~~g~~~~a~~~l~~a~~~~~~~~~ 444 (903)
T PRK04841 370 AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQ---A-WLAQSQHRYSEVNTLLARAEQELKDRNI 444 (903)
T ss_pred HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHH---H-HHHHHCCCHHHHHHHHHHHHHhccccCc
Confidence 34556667777888888999988777766431110 11111111111 1 456789999999999998876533221
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
..++.....+....+.++...|++++|...+++++.... .++......++..+|.++...|++.+|...+.+++.+++.
T Consensus 445 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 445 ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ 523 (903)
T ss_pred ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 113345677777889999999999999999999887422 2334445667889999999999999999999999999999
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH--HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL--ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~--~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
.|.....+.++..+|.++...|+. ++|..++++++......|.. ...+.++..+|.++.. .|++++|..+
T Consensus 524 ~g~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------~G~~~~A~~~ 595 (903)
T PRK04841 524 HDVYHYALWSLLQQSEILFAQGFL--QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE------WARLDEAEQC 595 (903)
T ss_pred hcchHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH------hcCHHHHHHH
Confidence 999999999999999999999998 99999999999999887642 3345556778888888 8999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
+++|+..++..+. .....++..+|.++...|+.+.+.+.......
T Consensus 596 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 596 ARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987763 34567888899999999999887765544433
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.15 E-value=3.9e-07 Score=109.02 Aligned_cols=242 Identities=13% Similarity=0.076 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...-.|||.++-..++++.|...+.......|.+-+..++..+ .+..++...+|..++..++.+-. +
T Consensus 496 lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~------ma~~k~~~~ea~~~lk~~l~~d~-----~-- 562 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC------MARDKNNLYEASLLLKDALNIDS-----S-- 562 (1018)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH------HHHhccCcHHHHHHHHHHHhccc-----C--
Confidence 5567999999999999999999999999888876665443333 44578999999999999998522 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh-----cCChhhhHHHHHHHHHHH-H
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-----SGNAVLGIPYALASLSFC-Q 778 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~-----~G~~~~Al~~l~~AL~la-~ 778 (924)
-..++...|.+++....+.-|-+.++..+..-. ...-+.+++.+|.++.+ ..++..+..++.+|+.+. .
T Consensus 563 -np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 563 -NPNARSLLGNLHLKKSEWKPAKKKFETILKKTS----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhc----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 457888999999999999999998887766322 22446677778877743 344466788888888885 3
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 858 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L 858 (924)
-...+.--+.|-..+|-|+..-|.. .+|++++.++-+..-.+.| ++..+|.|++. .|.+..|++.+
T Consensus 638 vL~~dpkN~yAANGIgiVLA~kg~~--~~A~dIFsqVrEa~~~~~d------v~lNlah~~~e------~~qy~~AIqmY 703 (1018)
T KOG2002|consen 638 VLRNDPKNMYAANGIGIVLAEKGRF--SEARDIFSQVREATSDFED------VWLNLAHCYVE------QGQYRLAIQMY 703 (1018)
T ss_pred HHhcCcchhhhccchhhhhhhccCc--hHHHHHHHHHHHHHhhCCc------eeeeHHHHHHH------HHHHHHHHHHH
Confidence 4555555566777899999999987 9999999888776665555 78899999999 89999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 859 RQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 859 ~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
+.++.-|-. .---+|+..||+++...|+..++-+++-..+
T Consensus 704 e~~lkkf~~----~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 704 ENCLKKFYK----KNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHhcc----cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999998863 3345688999999999999887666554433
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=1.9e-08 Score=115.30 Aligned_cols=240 Identities=17% Similarity=0.094 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|..+..+|+|++|...++.+... +......... ........+...|++++|...+.++... ++.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~-------~~~ 139 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLL-ALQELGQDYLKAGLLDRAEELFLQLVDE-------GDF 139 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHcC-------Ccc
Confidence 467888999999999999999999977753 2222111111 1112226788999999999999998763 221
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...++.++...|++++|++.++.++..... .........+..+|.++...|+++.|+..+.+++.....
T Consensus 140 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----- 212 (389)
T PRK11788 140 -AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQ----- 212 (389)
T ss_pred -hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-----
Confidence 4577888999999999999999999988763211 111234556788999999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+...+|.++...|+. ++|+.++++++.. +......++..++.++.. .|++++|+.+++++...
T Consensus 213 -~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~------~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 213 -CVRASILLGDLALAQGDY--AAAIEALERVEEQ-----DPEYLSEVLPKLMECYQA------LGDEAEGLEFLRRALEE 278 (389)
T ss_pred -CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 235677799999999998 9999999998764 223345667888999988 89999999999998876
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
. .+. .+...++.++...|+.+++.......
T Consensus 279 ~---p~~----~~~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 279 Y---PGA----DLLLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred C---CCc----hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 121 34478999999999998876654433
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.08 E-value=5.2e-08 Score=111.63 Aligned_cols=210 Identities=17% Similarity=0.062 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++++.+.-+ ........ ++ ..+...|++++|.+.+..+....+ .
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~--la-~~~~~~g~~~~A~~~~~~~~~~~~--~- 173 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQ--LL-EIYQQEKDWQKAIDVAERLEKLGG--D- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHH--HH-HHHHHhchHHHHHHHHHHHHHhcC--C-
Confidence 344567889999999999999999999998876522 11111111 11 577889999999999999877422 1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
.+..........++.++...|++++|...+++++.... ....+...+|.++.+.|++.+|+..+.+++...
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 244 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAAAIEALERVEEQD--- 244 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---
Confidence 11112345567889999999999999999999987522 235678889999999999999999999988752
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
+.....+...++.++...|+. ++|...+++++.. ..+. ..+..+|+.+.. .|++++|+..+++
T Consensus 245 --p~~~~~~~~~l~~~~~~~g~~--~~A~~~l~~~~~~---~p~~----~~~~~la~~~~~------~g~~~~A~~~l~~ 307 (389)
T PRK11788 245 --PEYLSEVLPKLMECYQALGDE--AEGLEFLRRALEE---YPGA----DLLLALAQLLEE------QEGPEAAQALLRE 307 (389)
T ss_pred --hhhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCc----hHHHHHHHHHHH------hCCHHHHHHHHHH
Confidence 223345667899999999998 9999999998765 2232 234788999998 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
+++.+
T Consensus 308 ~l~~~ 312 (389)
T PRK11788 308 QLRRH 312 (389)
T ss_pred HHHhC
Confidence 98874
No 23
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.05 E-value=6.1e-09 Score=114.49 Aligned_cols=218 Identities=14% Similarity=0.072 Sum_probs=165.6
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+...|+|.+|.+.+.++..+....+ ++...+.+....+.++ ..+++++|++.+++++..+...|+....++++..+
T Consensus 44 ~fk~~~~~~~A~~ay~kAa~~~~~~~--~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAADCYEKLG--DKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44577999999999999988877666 7676777777766665 55599999999999999999999999999999999
Q ss_pred HHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHH
Q 002424 754 AEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARA 831 (924)
Q Consensus 754 a~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a 831 (924)
|.++... |+++.|+.++.+|+.+....+........+..+|.++..+|+. ++|.++++++....+...- .+.....
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y--~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY--EEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhhcccccchhHHHH
Confidence 9999999 9999999999999999999999999999999999999999987 9999999999887666554 3444445
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
++..+-|+++ .||+..|...+++.....-.... ..+++++..+-.++.. ||.+.-.++...|..+
T Consensus 199 ~l~a~l~~L~------~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLA------MGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEE-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHH------TT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHT-T-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHh-CCHHHHHHHHHHHccc
Confidence 6677789999 88888887666665443322223 5667777777776654 5555545555555443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=4.3e-07 Score=113.45 Aligned_cols=234 Identities=13% Similarity=-0.040 Sum_probs=161.6
Q ss_pred ccCH---HHHHHHHHHHHHHhhccCchHHH--HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 638 FKGY---KEAFSALKIAEEKFLSVSKSRIL--LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 638 ~G~y---~eA~~~L~~a~~~f~~~~~~~~~--~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
.++| ++|++.++.+.+.++...+.... ....... ...+.+|++++|...+++++.. ++.+| ..+...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l-~~Ll~~g~~~eA~~~~~~ll~~----~~~~P---~~a~~~ 277 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL-GALLARDRYKDVISEYQRLKAE----GQIIP---PWAQRW 277 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH-HHHHHhhhHHHHHHHHHHhhcc----CCCCC---HHHHHH
Confidence 3456 77888888888776544432211 1111101 2335779999999999998774 11122 234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH--------hCCcH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL--------LNLDL 784 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~--------~g~~~ 784 (924)
.+.+++..|++++|+..+++++..-. .+..........++.++...|++++|+.++.++....-. ...+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p--~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPE--TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCC--CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 68899999999999999999876210 110111345566677789999999999999887765310 01111
Q ss_pred -HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 -LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 -~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
....+...+|.++...|+. ++|++++++++...-. + ..++..+|.++.. .|++++|+..+++|++
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~--~eA~~~l~~al~~~P~--n----~~l~~~lA~l~~~------~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDL--PQAEMRARELAYNAPG--N----QGLRIDYASVLQA------RGWPRAAENELKKAEV 421 (765)
T ss_pred chHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHh------cCCHHHHHHHHHHHHh
Confidence 2345667789999999998 9999999999776322 1 4588899999998 8999999999999988
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 864 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 864 ~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
.. ..-..+++.+|.++..+|+.+++.......
T Consensus 422 l~------Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 422 LE------PRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred hC------CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 65 222337888999999999988876654443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.01 E-value=2.8e-06 Score=106.31 Aligned_cols=214 Identities=14% Similarity=0.003 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
...+.......+..+|++++|.+.++.+.+.-+.........+. ..++..|++++|..++++++...+ .++
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la-----~~yl~~g~~e~A~~~l~~~l~~~p----~~~ 306 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVA-----SAYLKLHQPEKAQSILTELFYHPE----TIA 306 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHH-----HHHHhcCCcHHHHHHHHHHhhcCC----CCC
Confidence 34444432334457799999999999887663322222111122 678899999999999999876311 121
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------cccch-hHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--------FNLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--------~gd~~-~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.........++..+...|++++|++.++++...... ...+. ....+...+|.++...|++++|+..+.+++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112355666677789999999999999988763210 01111 235678899999999999999999999988
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
...-.. ..++..+|.++...|.+ ++|++.+++++..- -.+ ..+++.+|.+.+. .+++++|
T Consensus 387 ~~~P~n------~~l~~~lA~l~~~~g~~--~~A~~~l~~al~l~--Pd~----~~l~~~~a~~al~------~~~~~~A 446 (765)
T PRK10049 387 YNAPGN------QGLRIDYASVLQARGWP--RAAENELKKAEVLE--PRN----INLEVEQAWTALD------LQEWRQM 446 (765)
T ss_pred HhCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhC--CCC----hHHHHHHHHHHHH------hCCHHHH
Confidence 774221 36788899999999998 99999999998753 112 2256666777777 8999999
Q ss_pred HHHHHHHHHHHH
Q 002424 855 LDPLRQASEELQ 866 (924)
Q Consensus 855 l~~L~~A~~~f~ 866 (924)
...++++++.+-
T Consensus 447 ~~~~~~ll~~~P 458 (765)
T PRK10049 447 DVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHhCC
Confidence 999999988553
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=2.5e-08 Score=103.70 Aligned_cols=206 Identities=16% Similarity=0.015 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+..+.++.++|..+...|+|++|...++++....|... ..+. .+ ...+...|++++|...+++++.+.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~---~l-a~~~~~~~~~~~A~~~~~~al~~~~---- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY--LAYL---AL-ALYYQQLGELEKAEDSFRRALTLNP---- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHH---HH-HHHHHHcCCHHHHHHHHHHHHhhCC----
Confidence 445578899999999999999999999999987654321 1111 11 1677899999999999999988632
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
. ...+...++.++...|++++|.+.+++++.. .........+..+|.++...|++..|...+.+++.....
T Consensus 97 ~----~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 167 (234)
T TIGR02521 97 N----NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED----PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ- 167 (234)
T ss_pred C----CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 1 2367888999999999999999999999863 222334567888999999999999999999999876432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
...+...+|.++...|+. ++|...+++++.. . .+ ....+..+++++.. .|+.++|..+.+.
T Consensus 168 -----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~--~-~~---~~~~~~~~~~~~~~------~~~~~~a~~~~~~ 228 (234)
T TIGR02521 168 -----RPESLLELAELYYLRGQY--KDARAYLERYQQT--Y-NQ---TAESLWLGIRIARA------LGDVAAAQRYGAQ 228 (234)
T ss_pred -----ChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--C-CC---CHHHHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 134667899999999998 9999999999876 1 11 34445577788887 7888888888776
Q ss_pred HHHH
Q 002424 861 ASEE 864 (924)
Q Consensus 861 A~~~ 864 (924)
+...
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 6543
No 27
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.6e-08 Score=105.62 Aligned_cols=319 Identities=19% Similarity=0.276 Sum_probs=198.2
Q ss_pred CCCCccccChhHHHHHHHHHHhcCCC---CccCCCCCchhhhhhhhhhhhhhhhcCCCCCCc---ccHHHHHHHHHhhch
Q 002424 6 KPPGAFAVTPHKVSVCILIQMYAPPA---MMSVPFPFSSVAQHNRFGLYLFALTKSCEDILE---PKLDELINQLREIGD 79 (924)
Q Consensus 6 ~~~~~~~lTP~ki~ll~LI~~Y~~~~---~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~l~~l~~~l~~~~~ 79 (924)
|+--+++.||++.++|-.++.|+-+. +..+|..+ ..+++.. +....+ --..|+...+.....
T Consensus 17 k~kqa~fF~~~q~~ll~n~elkal~p~~lqk~v~~ll-----------~vlp~~~-p~~l~y~n~lrv~d~~s~l~sL~e 84 (482)
T KOG4322|consen 17 KNKQATFFTPHQLTLLLNIELKALRPIQLQKCVPFLD-----------LVLPYFN-PNDLQYQNLLRVHDITSHLPSLIE 84 (482)
T ss_pred cchhhhhccHHHHHHHHhhhhhccCchhhhcCchHHH-----------HhccccC-hhhhccchhhHHHHHHhhhhHHHH
Confidence 45567899999999999999999642 12222110 0111111 110000 011222222211110
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHHHHHHHHHhhhcCCCCCCCCCccccccCCCchhHHHHHHHHhhcccchhhHHHHHHH
Q 002424 80 VLYQWLTDQLISRLSSLSSPDDLFNLFSDLRAILGGTDLSAVDDEQVVLDPNSNLGMFVRRCLLAFNLLCFEGVCHLLTS 159 (924)
Q Consensus 80 ~~~~~~~~~ll~~L~~i~s~d~L~~f~~~l~~~l~~~~~~~~~~~~~~l~~~S~lG~Fvrr~~l~f~~l~F~~~~~L~~~ 159 (924)
..+|.. ......|...++.+|+.-|..+-.++........+...+.+...+....|+|+|+.++..-+|++-+.++.+
T Consensus 85 ~~dr~~--l~eegyy~~~nla~Lhe~fghl~al~eai~~aqe~~dh~~l~~~~~w~i~Lr~~~~~seq~Sv~~a~~f~~s 162 (482)
T KOG4322|consen 85 EYDRYS--LLEEGYYSLHNLADLHEIFGHLGALIEGIYDAQEEADHMLLSSSSLWSIFLRKCVVESEQFSVEQAVQFFKS 162 (482)
T ss_pred HHHhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHhccchHHHHHHhhhhhHHHHHHHHhhhhhHH
Confidence 001111 114444777788999998887655554433212223346889999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhccccCCCCCCCchhHhhhhhhhcchhhhHHHHhhhHHHHHHHhhcchhhccccCccccccchhhhhhh
Q 002424 160 IGIYCKEALSSCSAYELPCLDDSSNELEALSEYENMDLENIVFEKVNKEIEARKKASEEVSFHLHAPKALFGLVEDIKVS 239 (924)
Q Consensus 160 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~l~~~~~~~ 239 (924)
|-+|+.+... +. . ...+-+. --+++|... ..+.+++.+. .
T Consensus 163 ~Lq~~~~~~~-fq----------~------~a~~~W~----------lYGrhemA~-------~~s~~~llq~--a---- 202 (482)
T KOG4322|consen 163 FLQYRAPSMD-FQ----------H------EAIEFWK----------IYGRHELAN-------LASNKTLLQL--A---- 202 (482)
T ss_pred HHHhhccccC-cc----------h------hhhHHHH----------HhchhHHHH-------hhcchhHHHH--H----
Confidence 9999976420 00 0 0000000 001111100 0000011000 0
Q ss_pred cccccCCCCcccCCCCCCCCCCcccccccccCcccccchHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-CCCc
Q 002424 240 AVSKSQGGDKCREASPSAHAPNDAMREFDSISGAFLRTNWQMQGYLMEQADAIEKHGSSFSLNAFELILRQLQKL-APEL 318 (924)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~l~~qi~~l~~~~~~~p~~~l~~~~~~~~~~-~p~~ 318 (924)
.+++ + ..++-..++..-+.|++-.|+.+...|.. +..++.++... -...
T Consensus 203 --------------------l~s~--------a-~~~a~qg~~ql~~v~L~hKqrfp~~~~~a-~~wml~d~~~v~~~~~ 252 (482)
T KOG4322|consen 203 --------------------LGSI--------A-VSRSSQGIEQLTQVQLEHKQRFPCALPLA-MKWMLHDLLEVEENNL 252 (482)
T ss_pred --------------------HHHH--------H-HHHHhcchHHHHHHHHHHHHhcCCCcHHH-HHHHHHHhHHHHHhhh
Confidence 0000 0 01244455666677777788888777643 44444443322 3445
Q ss_pred hHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHHHHHH
Q 002424 319 HRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVLTEAV 398 (924)
Q Consensus 319 ~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l~Eai 398 (924)
...+|=.+++.|-.+||...+|++.| |+..+.. ..+..++|+++|...+|+++|+.++++.++.-.|
T Consensus 253 ~~~~~h~al~~~~g~d~~~svE~l~R-~A~il~A------------~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ 319 (482)
T KOG4322|consen 253 NTSYYHKALNSWFGGDYQQSVENLCR-FAHILHA------------DEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTI 319 (482)
T ss_pred hhhHHHHHHHHhhcchHHhhHHHHHH-HHHHHHH------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 56889999999999999999999999 9998742 1257899999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 002424 399 CLSQQHSNDTCLAYTLAAISNLL 421 (924)
Q Consensus 399 ~~Aqe~~D~~cl~~~l~wl~~l~ 421 (924)
.-+++.+|..|+++.++|.....
T Consensus 320 ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 320 AEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred HHHHhcCCCchhhHHHHHHHHHH
Confidence 99999999999999999987433
No 28
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.93 E-value=7.2e-08 Score=106.02 Aligned_cols=194 Identities=15% Similarity=0.065 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK 759 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~ 759 (924)
+|++|..++.++.. .+...|++.+|.+.+..+.......++....+.++...+.++..
T Consensus 30 ~~e~Aa~~y~~Aa~----------------------~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~ 87 (282)
T PF14938_consen 30 DYEEAADLYEKAAN----------------------CFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK 87 (282)
T ss_dssp HHHHHHHHHHHHHH----------------------HHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH----------------------HHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 66677666666654 34567889999999999988888888888889999998888877
Q ss_pred cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHh
Q 002424 760 SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF-GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838 (924)
Q Consensus 760 ~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l-G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~ 838 (924)
. ++..|+.++.+|+.+..+.|.....|.++..+|.++... |++ ++|++++++++......|.....+..+.-+|.+
T Consensus 88 ~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~--e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 88 G-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDY--EKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp T-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--H--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred h-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999999888 888 999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCChHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 839 LLSDPSFSVSQNPEAVLDPLRQASEELQVLE-DHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 839 ~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.. .|++.+|++.+++....+.... .....++.+.....+|...||...+..+...|...
T Consensus 165 ~~~------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 165 YAR------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHH------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHH------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999 8999999999999877654443 34567777778888999999999988877776644
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.92 E-value=3.2e-07 Score=112.50 Aligned_cols=226 Identities=16% Similarity=0.107 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..++..+...|++++|...++.+....|..... +. . . ..++..|++.+|...+++++...+ .+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--~~-~--~--~~l~~~g~~~eA~~~~~~~l~~~~----~~--- 210 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--IA-T--C--LSFLNKSRLPEDHDLARALLPFFA----LE--- 210 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH--HH-H--H--HHHHHcCCHHHHHHHHHHHHhcCC----Cc---
Confidence 456677777777888888887777665554432221 11 1 1 234567788888777777665311 01
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhh----hHHHHHHHHHHHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL----GIPYALASLSFCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~----Al~~l~~AL~la~~~g 781 (924)
........+.++...|++++|++.+++++... .....++..+|.++...|+++. |+..+.+++.+.-
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P--- 281 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARG------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS--- 281 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC---
Confidence 11223445666777778888877777776531 1225566777777777777764 5666666665531
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..+.++..+|.++...|+. ++|+..+++++..- .+ ...++..+|.++.. .|++++|+..++++
T Consensus 282 ---~~~~a~~~lg~~l~~~g~~--~eA~~~l~~al~l~---P~---~~~a~~~La~~l~~------~G~~~eA~~~l~~a 344 (656)
T PRK15174 282 ---DNVRIVTLYADALIRTGQN--EKAIPLLQQSLATH---PD---LPYVRAMYARALRQ------VGQYTAASDEFVQL 344 (656)
T ss_pred ---CCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhC---CC---CHHHHHHHHHHHHH------CCCHHHHHHHHHHH
Confidence 1245666777777777776 77777777776541 11 23455667777777 77777777777776
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
.+.- |. .......+|.++...|+.+++.++
T Consensus 345 l~~~-----P~-~~~~~~~~a~al~~~G~~deA~~~ 374 (656)
T PRK15174 345 AREK-----GV-TSKWNRYAAAALLQAGKTSEAESV 374 (656)
T ss_pred HHhC-----cc-chHHHHHHHHHHHHCCCHHHHHHH
Confidence 6531 11 113344456667777777665543
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.81 E-value=4.7e-07 Score=94.15 Aligned_cols=192 Identities=16% Similarity=0.071 Sum_probs=152.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++... |. ...+...++.++...|++++|.+.+++++.... ....++..
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~-------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~ 104 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHD-------PD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP------NNGDVLNN 104 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-------cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHH
Confidence 67788999999999999998752 22 357888899999999999999999999987522 12457888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++.+|+..+.+++.... ......+...+|.++...|+. ++|...+++++...-. ...++
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~------~~~~~ 172 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDF--DKAEKYLTRALQIDPQ------RPESL 172 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCcC------ChHHH
Confidence 99999999999999999999987432 122345567789999999998 9999999999875322 24567
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
..+|.++.. .|++++|+.++++++... ....+.+..++.++...|+.+.+..+.....
T Consensus 173 ~~la~~~~~------~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 173 LELAELYYL------RGQYKDARAYLERYQQTY------NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 889999998 899999999999998872 1245566688999999999998777655443
No 31
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=6.3e-06 Score=93.21 Aligned_cols=286 Identities=13% Similarity=-0.007 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 665 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~ 665 (924)
..+...+..+...|...-+............... +.. ......+..+...|++++|.+.++++.+..|... ..+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~ 81 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TER--ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LALK 81 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHH
Confidence 3455555666666654443221111122222222 222 2234567778889999999999998887765322 1111
Q ss_pred HHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 002424 666 LKLQLLHERSLH----RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN 741 (924)
Q Consensus 666 l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g 741 (924)
+. ..+.. .|+...+...+... . + +......+...++.++...|++++|.+.++++++....
T Consensus 82 ~~-----~~~~~~~~~~~~~~~~~~~l~~~----~---~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-- 146 (355)
T cd05804 82 LH-----LGAFGLGDFSGMRDHVARVLPLW----A---P-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-- 146 (355)
T ss_pred Hh-----HHHHHhcccccCchhHHHHHhcc----C---c-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Confidence 00 11122 23333333222220 0 0 11123455555666666666666666666666553211
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-
Q 002424 742 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL- 820 (924)
Q Consensus 742 d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl- 820 (924)
...++..+|.++...|++++|+.++.+++..... .+........++|.++...|+. ++|+.++++++..-.
T Consensus 147 ----~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~--~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 147 ----DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDY--EAALAIYDTHIAPSAE 218 (355)
T ss_pred ----CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCH--HHHHHHHHHHhccccC
Confidence 1344555566666666666666666665554432 2223333444566666666665 666666655431100
Q ss_pred -----h-------------hC-----CHH--------------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 821 -----G-------------HG-----GLE--------------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 821 -----~-------------~g-----d~~--------------~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
. .| .++ .....-...+++.+. .|+.++|...++....
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 219 SDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG------AGDKDALDKLLAALKG 292 (355)
T ss_pred CChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc------CCCHHHHHHHHHHHHH
Confidence 0 00 000 000001123344444 7888999999999988
Q ss_pred HHHh---hcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 864 ELQV---LEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 864 ~f~~---l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
..+. .+.....-.+...+|.++...|+.+++.+.......+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888 67777788899999999999999999877555554444
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.7e-07 Score=108.38 Aligned_cols=259 Identities=13% Similarity=0.040 Sum_probs=185.8
Q ss_pred hHHHHhHHHHHHhhcCCC-CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc------hHHHHHHHhh---
Q 002424 601 APLTRVNTLIYATCFSDG-SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK------SRILLLKLQL--- 670 (924)
Q Consensus 601 ~~ls~~~~~~~~~~~~~~-~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~------~~~~~l~l~l--- 670 (924)
..++.-.+.-++.+|..- .-.-+...+++++|.++...++|++|.+.|+.+..+-|-.-+ ...|+++..+
T Consensus 328 ~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 328 RSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 344444555455555441 001122488999999999999999999999988876442211 1134433110
Q ss_pred -H------------------HHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002424 671 -L------------------HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAH 731 (924)
Q Consensus 671 -~------------------~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~ 731 (924)
+ +-..-.+++++.|..++.++..+ ||. -+.+..+.|.=+....+|+.|+..++
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-------dp~-faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-------DPR-FAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-------CCc-cchhhhhcCChhhhhHHHHhHHHHHH
Confidence 0 01223488999999999999886 432 46778888888899999999999999
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 732 SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 732 ~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.++. .....-+++..+|.||.+.++++.|..++.+|+.+-=. -...++++|.++.++|.. ++|+++
T Consensus 480 ~Al~------~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi~~~~g~~~~~~k~~--d~AL~~ 545 (638)
T KOG1126|consen 480 KALG------VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVILCHIGRIQHQLKRK--DKALQL 545 (638)
T ss_pred hhhc------CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc------chhHHhhhhHHHHHhhhh--hHHHHH
Confidence 8875 23345789999999999999999999999999887521 125577899999999999 999999
Q ss_pred HHHHHhHHHhhC-CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 812 IQQALPLILGHG-GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 812 Le~aLp~vl~~g-d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
+++|+-+=.... .++.+| ..+.. .+++.+|+..|++-.++. ..+.-|++++|.+|..+|.
T Consensus 546 ~~~A~~ld~kn~l~~~~~~-------~il~~------~~~~~eal~~LEeLk~~v------P~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRA-------SILFS------LGRYVEALQELEELKELV------PQESSVFALLGKIYKRLGN 606 (638)
T ss_pred HHHHHhcCCCCchhHHHHH-------HHHHh------hcchHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHcc
Confidence 999976522211 123333 33444 677888888888776654 6889999999999999999
Q ss_pred HHHHHHHHHH
Q 002424 891 LAEREEAAAL 900 (924)
Q Consensus 891 ~~~r~~aa~~ 900 (924)
...+-..--.
T Consensus 607 ~~~Al~~f~~ 616 (638)
T KOG1126|consen 607 TDLALLHFSW 616 (638)
T ss_pred chHHHHhhHH
Confidence 8886653333
No 33
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.1e-05 Score=94.59 Aligned_cols=249 Identities=15% Similarity=0.056 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..|+.++...|+|..+..+.+++...-. .+. -...-.++++ +.+-.+|+|+.|-..|-+++.- |+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-~~~-~~aes~Y~~g-Rs~Ha~Gd~ekA~~yY~~s~k~-------~~d~ 340 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE-NKS-IKAESFYQLG-RSYHAQGDFEKAFKYYMESLKA-------DNDN 340 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHH-HHHHhhccHHHHHHHHHHHHcc-------CCCC
Confidence 6788999999999999999999888875421 110 0011122222 4455799999999999998873 3334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC----ChhhhHHHHHHHHHHHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG----NAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G----~~~~Al~~l~~AL~la~~~g 781 (924)
-...++.+|.+++..|++++|..+++..+.. ......++..+|.+|...+ ..++|..++..++...
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~---- 410 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT---- 410 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHh------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc----
Confidence 5677889999999999999999999988763 3445778889999999887 3456666666665554
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..-+.+.+.||.+|. .+++ ..++..+..++......+.. ..-..++.+|-.|+. .|.+.+|.+++..|
T Consensus 411 --~~d~~a~l~laql~e-~~d~--~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~------~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 411 --PVDSEAWLELAQLLE-QTDP--WASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFR------LGNIEKALEHFKSA 478 (1018)
T ss_pred --cccHHHHHHHHHHHH-hcCh--HHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHH------hcChHHHHHHHHHH
Confidence 334567788999986 6666 77899999999998888877 778889999999998 89999999999999
Q ss_pred HHHHHhhcCHHH----HHHHHHHHHHHHHhcCCHHHHHH-----------HHHHHHHHHH
Q 002424 862 SEELQVLEDHEL----AAEAFYLIAIVFDKLGRLAEREE-----------AAALFKEYVL 906 (924)
Q Consensus 862 ~~~f~~l~~~~~----~~~vl~~lA~l~~~lGd~~~r~~-----------aa~~f~~l~~ 906 (924)
+.......++.. .-...|.+|++...+++.+.+.+ +...|.+++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGC 538 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhH
Confidence 998664444433 12358999999999999998877 6777777763
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.74 E-value=9.4e-07 Score=111.61 Aligned_cols=227 Identities=17% Similarity=0.047 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
...++.++|.++.. |++++|...+.++....|. .. . .+.++ ......|++++|...++++... + + +
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~~-~--~L~lA-~al~~~Gr~eeAi~~~rka~~~-~---p-~- 541 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---AW-Q--HRAVA-YQAYQVEDYATALAAWQKISLH-D---M-S- 541 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---hH-H--HHHHH-HHHHHCCCHHHHHHHHHHHhcc-C---C-C-
Confidence 45667777777765 7788888877777766553 11 1 11111 3445778888888888776442 1 0 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
....+..+.++...|++++|...+++++... ... ......++......|+++.|+..+.+++.+.-
T Consensus 542 ---~~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P----- 607 (987)
T PRK09782 542 ---NEDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGD--NALYWWLHAQRYIPGQPELALNDLTRSLNIAP----- 607 (987)
T ss_pred ---cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----Ccc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-----
Confidence 1234566777778888888888887776631 111 22233344444556888888888877776532
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
. +.+...+|.++..+|+. ++|+..+++++..-- ..+.++..+|.++.. .|++++|+.++++|++
T Consensus 608 ~--~~a~~~LA~~l~~lG~~--deA~~~l~~AL~l~P------d~~~a~~nLG~aL~~------~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 608 S--ANAYVARATIYRQRHNV--PAAVSDLRAALELEP------NNSNYQAALGYALWD------SGDIAQSREMLERAHK 671 (987)
T ss_pred C--HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 1 34566777788788877 888888877766521 123567777777777 7778888888888776
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 864 ELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 864 ~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
.. ....++++.+|.++...|+.+++..+...
T Consensus 672 l~------P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 672 GL------PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred hC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 53 13346777788888888887776654433
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.73 E-value=8e-05 Score=92.65 Aligned_cols=196 Identities=13% Similarity=-0.030 Sum_probs=143.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
....+|+++++...++.+..... .....+..-.|..++..++.++|...+.+++..................+
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~-------~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L 373 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGY-------KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDL 373 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCC-------CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHH
Confidence 45679999999999999976211 23568999999999999999999999999876321100011123334567
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHH-----------HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQ-----------LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~-----------~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
-..+..+|++++|..++.+...-.- .-+.++. .+...++.++.-.|+. .+|.+++++.+... =
T Consensus 374 ~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~~gdl--~~Ae~~le~l~~~a--P 447 (822)
T PRK14574 374 YYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQSLVALNDL--PTAQKKLEDLSSTA--P 447 (822)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC--C
Confidence 7888999999999999987765211 2234444 4555577777779998 99999999996553 3
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAA 898 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa 898 (924)
|+.. ..+.+|.++.. +|.+.+|...++.|.... .....+...+|.++..+|+..+++...
T Consensus 448 ~n~~----l~~~~A~v~~~------Rg~p~~A~~~~k~a~~l~------P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 448 ANQN----LRIALASIYLA------RDLPRKAEQELKAVESLA------PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CCHH----HHHHHHHHHHh------cCCHHHHHHHHHHHhhhC------CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4433 44578888888 999999999998887653 344677888999999999988876544
No 36
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.72 E-value=4.9e-07 Score=114.13 Aligned_cols=196 Identities=11% Similarity=0.003 Sum_probs=150.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
...+|..+...|++++|...++.+...-+ ....+ . ..+ ..++..|++.+|..++++++.+. |. ..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p---~~~a~-~--~la-~all~~Gd~~eA~~~l~qAL~l~-------P~-~~ 576 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDM---SNEDL-L--AAA-NTAQAAGNGAARDRWLQQAEQRG-------LG-DN 576 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCC---CcHHH-H--HHH-HHHHHCCCHHHHHHHHHHHHhcC-------Cc-cH
Confidence 55567777789999999999998654322 11111 1 111 56678999999999999998752 21 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.....++..+.+.|++++|+..+++++.. ++. ..++..+|.++.+.|+++.|+..+.+++.+.- ..+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-----~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P------d~~ 643 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI-----APS--ANAYVARATIYRQRHNVPAAVSDLRAALELEP------NNS 643 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCH
Confidence 33334555556679999999999999873 332 56889999999999999999999999988852 123
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.++..+|.++...|+. ++|+.++++++..-- .-+.++..+|.++.. .|++++|+.++++|++.-
T Consensus 644 ~a~~nLG~aL~~~G~~--eeAi~~l~~AL~l~P------~~~~a~~nLA~al~~------lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 644 NYQAALGYALWDSGDI--AQSREMLERAHKGLP------DDPALIRQLAYVNQR------LDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhcC
Confidence 6788899999999998 999999999977521 234688999999999 899999999999998755
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.72 E-value=2.2e-06 Score=95.01 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+.+..+..+..+|..+...|++++|...++++.+..|... ..+. ..+..+...|++++|...+++++.+.+
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~----~lg~~~~~~g~~~~A~~~~~~Al~l~P--- 129 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYN----YLGIYLTQAGNFDAAYEAFDSVLELDP--- 129 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHH----HHHHHHHHCCCHHHHHHHHHHHHHhCC---
Confidence 3456688899999999999999999999999998866432 1121 112677899999999999999998733
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. ...++.++|.++...|++++|++.++.++.... .+. .+.+. ..+....+++.+|+..+.+++...
T Consensus 130 ----~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~---~~~~~--~~l~~~~~~~~~A~~~l~~~~~~~-- 195 (296)
T PRK11189 130 ----T-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDP---YRALW--LYLAESKLDPKQAKENLKQRYEKL-- 195 (296)
T ss_pred ----C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCH---HHHHH--HHHHHccCCHHHHHHHHHHHHhhC--
Confidence 2 356789999999999999999999999987532 122 12211 223456788999999987655322
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
..+.+ ..+.+...+|+...+++...+.+.+....+.+ ..-+.+++.||+++.. .|++++|+.+++
T Consensus 196 -~~~~~------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg~~~~~------~g~~~~A~~~~~ 260 (296)
T PRK11189 196 -DKEQW------GWNIVEFYLGKISEETLMERLKAGATDNTELA--ERLCETYFYLAKYYLS------LGDLDEAAALFK 260 (296)
T ss_pred -Ccccc------HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHH------CCCHHHHHHHHH
Confidence 11111 12344445777622223333333322222222 2346689999999999 999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+|++.- ..+....+-++..+..+..
T Consensus 261 ~Al~~~--~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 261 LALANN--VYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHhC--CchHHHHHHHHHHHHHHHh
Confidence 998642 2233444444444544433
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.1e-06 Score=91.91 Aligned_cols=217 Identities=19% Similarity=0.126 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..+...||.++..+|+.|.|+.+.+....+ |.++..+ ..+.++-++.-++..|=++.|+.++.++.. .++
T Consensus 69 ~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~q-r~lAl~qL~~Dym~aGl~DRAE~~f~~L~d--------e~e 138 (389)
T COG2956 69 FEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQ-RLLALQQLGRDYMAAGLLDRAEDIFNQLVD--------EGE 138 (389)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHhc--------chh
Confidence 456778999999999999999998866644 4454443 222323222778899999999999999865 355
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..-.++..+..++....+++.|++..+++...-. -......+...+.+|+-+....+.++|+..+.+|+....+
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~----- 212 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK----- 212 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-----
Confidence 6778899999999999999999999998766421 1223445888999999999999999999999999887643
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
-.+|-..||.+.+..|+. ++|.+.++.++.+ ++.-...+.-.|..||.. .|++++.+.+|.++.+.
T Consensus 213 -cvRAsi~lG~v~~~~g~y--~~AV~~~e~v~eQ-----n~~yl~evl~~L~~~Y~~------lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 213 -CVRASIILGRVELAKGDY--QKAVEALERVLEQ-----NPEYLSEVLEMLYECYAQ------LGKPAEGLNFLRRAMET 278 (389)
T ss_pred -ceehhhhhhHHHHhccch--HHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHc
Confidence 246677799999999988 9999999999876 666778888899999999 99999999999998876
Q ss_pred HHhhcCH
Q 002424 865 LQVLEDH 871 (924)
Q Consensus 865 f~~l~~~ 871 (924)
+......
T Consensus 279 ~~g~~~~ 285 (389)
T COG2956 279 NTGADAE 285 (389)
T ss_pred cCCccHH
Confidence 6544433
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.64 E-value=5.7e-06 Score=85.24 Aligned_cols=219 Identities=19% Similarity=0.112 Sum_probs=161.3
Q ss_pred HHHhHHHHHHhhcCCCCC-----hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH
Q 002424 603 LTRVNTLIYATCFSDGSS-----LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH 677 (924)
Q Consensus 603 ls~~~~~~~~~~~~~~~~-----~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~ 677 (924)
++.+.++....|.++..+ ....+.+...||.-+..+|++..|..-|+.|++.-|..-. .|.+.- ..+-.
T Consensus 8 i~lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~--a~~~~A----~~Yq~ 81 (250)
T COG3063 8 ISLVFSLALGACVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL--AHLVRA----HYYQK 81 (250)
T ss_pred HHHHHHHhhhcccCCCCccccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH--HHHHHH----HHHHH
Confidence 344445544556666443 4566778889999999999999999999999988654322 232221 56778
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.|+.+.|.+.+++++.+.+. ...++++-|..++.+|+|++|+..+++++.. ..-....+++-++|.+.
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~--------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 82 LGENDLADESYRKALSLAPN--------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCA 149 (250)
T ss_pred cCChhhHHHHHHHHHhcCCC--------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHH
Confidence 99999999999999997543 4578999999999999999999999999872 33355688999999999
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr 837 (924)
.+.|++..|..++.++|.+=... ..++..++..+..-|+. ..|+..++.-. ..+. ..|..+.+..+
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~~~~y--~~Ar~~~~~~~----~~~~--~~A~sL~L~ir 215 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQF------PPALLELARLHYKAGDY--APARLYLERYQ----QRGG--AQAESLLLGIR 215 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCC------ChHHHHHHHHHHhcccc--hHHHHHHHHHH----hccc--ccHHHHHHHHH
Confidence 99999999999999999885433 24556688888778887 88888877653 2222 45555555444
Q ss_pred hhhcCCCCCCCCChHHHHHHHH
Q 002424 838 CLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 838 ~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.--. .|+...+-.|-.
T Consensus 216 iak~------~gd~~~a~~Y~~ 231 (250)
T COG3063 216 IAKR------LGDRAAAQRYQA 231 (250)
T ss_pred HHHH------hccHHHHHHHHH
Confidence 4444 455555544433
No 40
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=1.2e-05 Score=90.87 Aligned_cols=238 Identities=13% Similarity=-0.015 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...+.+.+|..+..+|+|++|...++++.++-|..... ...+. ..+...|++++|..++.+.+...+. +
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~-~~~la-----~i~~~~g~~~eA~~~l~~~l~~~~~----~ 181 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWA-VHAVA-----HVLEMQGRFKEGIAFMESWRDTWDC----S 181 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHH-HHHHH-----HHHHHcCCHHHHHHHHHhhhhccCC----C
Confidence 335677889999999999999999999999886643211 11122 5778899999999999999886432 3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
+.........++.++...|++++|++.+++++..-. .............+...+...|....+... ............
T Consensus 182 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~ 259 (355)
T cd05804 182 SMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA-ESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFP 259 (355)
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc-CCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcC
Confidence 344556677899999999999999999998853210 001111110110222233344433222222 111122211111
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh---hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG---HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~---~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.........+.+.+....|+. ++|..+++.+...... .+..........+.|-++.+ .|++++|+..|.
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~--~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~------~g~~~~A~~~L~ 331 (355)
T cd05804 260 DHGLAFNDLHAALALAGAGDK--DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA------EGNYATALELLG 331 (355)
T ss_pred cccchHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 111112223466666778877 9999999999998888 66777778888888888888 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~ 880 (924)
.|+.....+|--..|.+|+..
T Consensus 332 ~al~~a~~~ggs~aq~~~~~~ 352 (355)
T cd05804 332 PVRDDLARIGGSHAQRDVFEQ 352 (355)
T ss_pred HHHHHHHHhCCcHHHHHHHHH
Confidence 999999999999999988754
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=98.59 E-value=4.7e-06 Score=100.43 Aligned_cols=225 Identities=12% Similarity=-0.019 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHH---------ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhh
Q 002424 625 ALAHVKLIQHLAV---------FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 695 (924)
Q Consensus 625 ~~a~~~La~~~a~---------~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~ 695 (924)
..+++.+|.++.. .|++++|...+++|.+.-|..... +..+. ..+...|++++|..++++++.+.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a-~~~lg-----~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA-LGLLG-----LINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH-HHHHH-----HHHHHccCHHHHHHHHHHHHHhC
Confidence 3456666665543 345899999999999876643221 11122 46678999999999999999873
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 696 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 696 ~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+ . .+.+++.+|.++...|++++|++.++++++.. +.. ..+...++.++...|++++|+..+.+++.
T Consensus 369 P-------~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 369 P-------I-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTR-AAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred C-------C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3 2 35678899999999999999999999998852 221 12233455567778999999999888765
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 855 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al 855 (924)
... .....++..+|.++..+|+. ++|+..++++++.-- ....+...++..++. .| ++|.
T Consensus 435 ~~~-----p~~~~~~~~la~~l~~~G~~--~eA~~~~~~~~~~~~------~~~~~~~~l~~~~~~------~g--~~a~ 493 (553)
T PRK12370 435 QHL-----QDNPILLSMQVMFLSLKGKH--ELARKLTKEISTQEI------TGLIAVNLLYAEYCQ------NS--ERAL 493 (553)
T ss_pred hcc-----ccCHHHHHHHHHHHHhCCCH--HHHHHHHHHhhhccc------hhHHHHHHHHHHHhc------cH--HHHH
Confidence 431 11123556789999899998 999999988766522 123344556666665 45 3666
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 856 DPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 856 ~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
..+++.++....-.. -.+..+.+|...|+.+.+..
T Consensus 494 ~~l~~ll~~~~~~~~------~~~~~~~~~~~~g~~~~~~~ 528 (553)
T PRK12370 494 PTIREFLESEQRIDN------NPGLLPLVLVAHGEAIAEKM 528 (553)
T ss_pred HHHHHHHHHhhHhhc------CchHHHHHHHHHhhhHHHHH
Confidence 667765554442221 12237888888888776443
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=0.00026 Score=88.13 Aligned_cols=247 Identities=8% Similarity=-0.100 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH--HHHHHhhHHHHHH-----HcCCHHHHHHHHHHHhhhhhcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--LLLKLQLLHERSL-----HRGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~--~~l~l~l~~~~al-----~~G~~~~A~~~l~~ll~l~~~~ 698 (924)
.++..+...+...|-...|+++..+--..|......++ ..+...+ ..++ ...++..+...+.+...+....
T Consensus 204 e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v--r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 204 EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV--RMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH--hhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 45577778888889988998877743333322111111 0111111 1111 3456666666666665554332
Q ss_pred CCCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 699 TGVDMD---LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 699 ~~~D~~---~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+ .+|. ....+..-...++..+|++.++++.++.+... ....-..+.--.|..|+..++|++|++.+.+++.
T Consensus 282 ~-~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-----~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 282 G-KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-----GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred c-CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 2 2332 22345555666678999999999999977542 2223355777889999999999999999988765
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH----HH-------hhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL----IL-------GHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~----vl-------~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
-.-..............|--.++..|+. ++|..++++.... +. .-.+-+. .++.++|.++..
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~--~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~--~~~~l~a~~~~~--- 428 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQL--DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI--EGQTLLVQSLVA--- 428 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccH--HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH--HHHHHHHHHHHH---
Confidence 4311111111122223456666677776 9999999999862 21 1223334 566777777887
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.|++.+|...+++.+... ..-..++..+|.++...|.+..+.+
T Consensus 429 ---~gdl~~Ae~~le~l~~~a------P~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 429 ---LNDLPTAQKKLEDLSSTA------PANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred ---cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999998876532 1222334455666666666555444
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.53 E-value=4.5e-05 Score=88.51 Aligned_cols=288 Identities=14% Similarity=0.034 Sum_probs=172.1
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK 667 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~ 667 (924)
..+.+.+-..-|...-+.-+-..+...+.+ +...+....+..+..+|+|++|.+.++.+.+..|.... .+.
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-----~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~----~l~ 191 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAELAGN-----DNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKE----VLK 191 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHH
Confidence 344455555556555554433222221211 11122334477778899999999999988877664332 111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 668 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 668 l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
.....++..|+|++|.+.+.++... .+. ++............-++..|+.+++.+.+..+..... ...+...
T Consensus 192 --ll~~~~~~~~d~~~a~~~l~~l~k~--~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p--~~~~~~~ 263 (409)
T TIGR00540 192 --LAEEAYIRSGAWQALDDIIDNMAKA--GLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP--RHRRHNI 263 (409)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHc--CCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC--HHHhCCH
Confidence 1126778999999999999988863 111 2221112222222222344455555555555544110 0112357
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
++....|..+...|+++.|+..+.+++.......... ...+ .....+.-++. +++++.++..+.. .-+++.
T Consensus 264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~---~~~l-~~~~~l~~~~~--~~~~~~~e~~lk~--~p~~~~- 334 (409)
T TIGR00540 264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS---LPLC-LPIPRLKPEDN--EKLEKLIEKQAKN--VDDKPK- 334 (409)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch---hHHH-HHhhhcCCCCh--HHHHHHHHHHHHh--CCCChh-
Confidence 7888899999999999999999999998754332111 1112 22222334555 7888888887643 223322
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 907 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~ 907 (924)
+..+..||+++.. .|++.+|.+++++|...-. -.++. +...+|.++..+|+.+++.++...-...-.+
T Consensus 335 -~~ll~sLg~l~~~------~~~~~~A~~~le~a~a~~~-~p~~~----~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 335 -CCINRALGQLLMK------HGEFIEAADAFKNVAACKE-QLDAN----DLAMAADAFDQAGDKAEAAAMRQDSLGLMLA 402 (409)
T ss_pred -HHHHHHHHHHHHH------cccHHHHHHHHHHhHHhhc-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 5788899999999 8999999999995433221 12222 3447899999999999987776666566566
Q ss_pred hhccCC
Q 002424 908 LENENR 913 (924)
Q Consensus 908 ~~~~~~ 913 (924)
++.+.|
T Consensus 403 ~~~~~~ 408 (409)
T TIGR00540 403 IQDNIP 408 (409)
T ss_pred ccccCC
Confidence 655433
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=98.53 E-value=4.9e-06 Score=100.24 Aligned_cols=213 Identities=9% Similarity=-0.080 Sum_probs=147.7
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHh-h-HHH--HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-L-LHE--RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~-l-~~~--~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.+++++|.+.+++|.+.-|....... .+... . ... .....|++.+|...+++++.+ ||. ...++..+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~-~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-------dP~-~~~a~~~l 344 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYC-ALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-------DHN-NPQALGLL 344 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHH-HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-------CCC-CHHHHHHH
Confidence 35688999999999988764432211 11110 0 000 111456799999999999986 222 35678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
|.++...|++++|...++++++.. ...+.++..+|.++...|++++|+..+.+|+.+.-.. . .+...+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~--~----~~~~~~ 412 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLS------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR--A----AAGITK 412 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--h----hhHHHH
Confidence 999999999999999999998852 2235678899999999999999999999998885321 1 122234
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHH
Q 002424 794 AELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL 873 (924)
Q Consensus 794 a~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~ 873 (924)
+.++...|.. ++|+..+++++.... .....++..+|.++.. .|++++|...+++..... ..
T Consensus 413 ~~~~~~~g~~--eeA~~~~~~~l~~~~-----p~~~~~~~~la~~l~~------~G~~~eA~~~~~~~~~~~------~~ 473 (553)
T PRK12370 413 LWITYYHTGI--DDAIRLGDELRSQHL-----QDNPILLSMQVMFLSL------KGKHELARKLTKEISTQE------IT 473 (553)
T ss_pred HHHHHhccCH--HHHHHHHHHHHHhcc-----ccCHHHHHHHHHHHHh------CCCHHHHHHHHHHhhhcc------ch
Confidence 4456668887 999999888764421 1123467888999988 899999999987754332 12
Q ss_pred HHHHHHHHHHHHHhcCC
Q 002424 874 AAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 874 ~~~vl~~lA~l~~~lGd 890 (924)
.-.....++.+|...|+
T Consensus 474 ~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 474 GLIAVNLLYAEYCQNSE 490 (553)
T ss_pred hHHHHHHHHHHHhccHH
Confidence 33345566777777774
No 45
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.0035 Score=70.79 Aligned_cols=215 Identities=18% Similarity=0.137 Sum_probs=166.0
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcc------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc----chhH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMD------LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL----QVEN 746 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~------~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd----~~~~ 746 (924)
-.|-+++|..+-+.++....++.-.|.. .....+-.++-+-+-+||+.+|++-+.++...|.+... +...
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4788889998888887765555433311 11233345566668899999999999999999988665 3556
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-----------------------
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN----------------------- 803 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~----------------------- 803 (924)
+...+++|.--...|.++.|..++..|..+-.. ..+.|-+..++|-+|+..|+.
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence 778889998888899999999999988877543 345777788899999888773
Q ss_pred ----------------hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 804 ----------------HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 804 ----------------~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.+.+|...+++.|...-.-+-..+.|+.+.+|+.+... .|+..++...++-|..+..+
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~ls------lgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLS------LGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH------hcchHHHHhccchHHHHHhc
Confidence 45788888888888887677777888888888877777 78888888888888888889
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHH
Q 002424 868 LEDHELAAEAFYLIAIVFDKLGR--LAEREEAAAL 900 (924)
Q Consensus 868 l~~~~~~~~vl~~lA~l~~~lGd--~~~r~~aa~~ 900 (924)
+.|..-+-=....+-.+|...|+ .+..+++...
T Consensus 518 i~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 518 IPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred CCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 98888888888888888888888 5555554443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.49 E-value=7.6e-06 Score=94.57 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..+.-.+.....+|++++|...++++.+..+...... .... ...++..|++++|.+.++++....+ .
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~-~l~~----a~l~l~~g~~~~Al~~l~~~~~~~P-------~- 185 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV-EITR----VRIQLARNENHAARHGVDKLLEVAP-------R- 185 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH-HHHH----HHHHHHCCCHHHHHHHHHHHHhcCC-------C-
Confidence 3344445555778999999999998876544221111 1111 1677889999999999988877532 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------Hcc--------------cchhHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCY----------------------KFN--------------LQVENASV 749 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~----------------------~~g--------------d~~~~a~a 749 (924)
...++..++.++.+.|++++|++.+..+...-. ... .......+
T Consensus 186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~ 265 (398)
T PRK10747 186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVAL 265 (398)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHH
Confidence 347778888888999999999977766552100 000 00011335
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
....|..+...|+.+.|...+.+++... .++ ......+.+ ..|++ +++++.+++.+.. +. .-+
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~---~~~----~l~~l~~~l--~~~~~--~~al~~~e~~lk~---~P---~~~ 328 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQ---YDE----RLVLLIPRL--KTNNP--EQLEKVLRQQIKQ---HG---DTP 328 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCH----HHHHHHhhc--cCCCh--HHHHHHHHHHHhh---CC---CCH
Confidence 6677888999999999999998887622 122 111122322 34776 8888888877643 22 234
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
..++.+|+.++. .+++.+|.++++++++.- |. ..++..+|.++...|+.+++.++-.
T Consensus 329 ~l~l~lgrl~~~------~~~~~~A~~~le~al~~~-----P~--~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 329 LLWSTLGQLLMK------HGEWQEASLAFRAALKQR-----PD--AYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHH------CCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578889999999 899999999999998752 22 2445689999999999988766544
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=6.7e-06 Score=95.51 Aligned_cols=228 Identities=14% Similarity=0.067 Sum_probs=169.3
Q ss_pred HHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHH
Q 002424 589 LLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKL 668 (924)
Q Consensus 589 ~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l 668 (924)
...+.+|-.--...++.+.-.+ . -. +...+ .+.|.+|..+..|++++.|+..+++|.++=+.... .-.+
T Consensus 392 iyST~LWHLq~~v~Ls~Laq~L-i-~~-~~~sP----esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY----ayTL 460 (638)
T KOG1126|consen 392 IYSTTLWHLQDEVALSYLAQDL-I-DT-DPNSP----ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY----AYTL 460 (638)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-H-hh-CCCCc----HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch----hhhh
Confidence 3455677665555666554432 1 12 22223 45788999999999999999999998876332221 1111
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH
Q 002424 669 QLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS 748 (924)
Q Consensus 669 ~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~ 748 (924)
.+.-.....+++.|...++.++.. ||. .-.+++.+|.++++++.++.|.-.++.++.+ -.....
T Consensus 461 --lGhE~~~~ee~d~a~~~fr~Al~~-------~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I------NP~nsv 524 (638)
T KOG1126|consen 461 --LGHESIATEEFDKAMKSFRKALGV-------DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI------NPSNSV 524 (638)
T ss_pred --cCChhhhhHHHHhHHHHHHhhhcC-------Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC------Cccchh
Confidence 114556788999999999999875 333 5789999999999999999999999999874 223355
Q ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH
Q 002424 749 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 828 (924)
Q Consensus 749 al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~ 828 (924)
.+.-.|.++.+.|+.++|+..+.+|+.+=... ...+...|.++..+|+. .+|+..||+.-..+- .+
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~--~eal~~LEeLk~~vP------~e 590 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRY--VEALQELEELKELVP------QE 590 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcch--HHHHHHHHHHHHhCc------ch
Confidence 67888999999999999999999998764322 23456678888889998 999999999877765 67
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 829 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 829 A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
+-+++++|++|.. .|....|+..+.=|.+
T Consensus 591 s~v~~llgki~k~------~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 591 SSVFALLGKIYKR------LGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHHH------HccchHHHHhhHHHhc
Confidence 8899999999998 7777777776665543
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.44 E-value=2.1e-05 Score=87.20 Aligned_cols=221 Identities=14% Similarity=-0.062 Sum_probs=142.4
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.++.+.+++.+.+++...+ ..+........+.+ ..+...|++.+|...+.+++.+. |. ...+++.+|.++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g-~~~~~~g~~~~A~~~~~~Al~l~-------P~-~~~a~~~lg~~~ 108 (296)
T PRK11189 39 TLQQEVILARLNQILASRD-LTDEERAQLHYERG-VLYDSLGLRALARNDFSQALALR-------PD-MADAYNYLGIYL 108 (296)
T ss_pred chHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcC-------CC-CHHHHHHHHHHH
Confidence 3556778888877775433 22221111111111 56778999999999999999862 22 368899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
...|++++|++.+++++++. .....++..+|.++...|+++.|+..+.+++.+.-. ++. .. . ...+.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~-~~-~---~~~l~ 175 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPY-RA-L---WLYLA 175 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-HH-H---HHHHH
Confidence 99999999999999998742 222557899999999999999999999999876422 221 11 1 11122
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh-cCHHHHHH
Q 002424 798 LSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL-EDHELAAE 876 (924)
Q Consensus 798 ~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l-~~~~~~~~ 876 (924)
...+.. ++|+..+++.++.. ..+.+..+.++ +. .|+...+ ..++.+.+.++.. .-....++
T Consensus 176 ~~~~~~--~~A~~~l~~~~~~~--~~~~~~~~~~~-------~~------lg~~~~~-~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 176 ESKLDP--KQAKENLKQRYEKL--DKEQWGWNIVE-------FY------LGKISEE-TLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred HccCCH--HHHHHHHHHHHhhC--CccccHHHHHH-------HH------ccCCCHH-HHHHHHHhcCCCcHHHHHHHHH
Confidence 345666 99999998876432 11222222222 22 2333222 2344444333211 11245678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 002424 877 AFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 877 vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
+++.+|.++...|+.+++..+-.
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999998776543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.43 E-value=7.5e-07 Score=97.71 Aligned_cols=225 Identities=19% Similarity=0.107 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.....+|.+....|++++|...++++...=+ ....... .+. .. +..+++.+|..++...... .+ +
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----~~~~~~~-~l~-~l-~~~~~~~~A~~~~~~~~~~---~~--~--- 109 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLASDK----ANPQDYE-RLI-QL-LQDGDPEEALKLAEKAYER---DG--D--- 109 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----ccccccc-ccc-cc-ccccccccccccccccccc---cc--c---
Confidence 3344456666666777777777775553311 1100000 011 22 5778888888777665442 11 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...+.++...|+++++.+.++.+... ........++..+|.++.+.|++.+|+..+.+|+.+.-.
T Consensus 110 -~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------ 178 (280)
T PF13429_consen 110 -PRYLLSALQLYYRLGDYDEAEELLEKLEEL----PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------ 178 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------
T ss_pred -cchhhHHHHHHHHHhHHHHHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------
Confidence 233445666778888998888888876531 222355778999999999999999999999999888632
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
-..++..++.++...|.. +++..+++........... .+..+|.++.. .|++.+|+.++++++...
T Consensus 179 ~~~~~~~l~~~li~~~~~--~~~~~~l~~~~~~~~~~~~------~~~~la~~~~~------lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDY--DEAREALKRLLKAAPDDPD------LWDALAAAYLQ------LGRYEEALEYLEKALKLN 244 (280)
T ss_dssp -HHHHHHHHHHHCTTCHH--HHHHHHHHHHHHH-HTSCC------HCHHHHHHHHH------HT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCh--HHHHHHHHHHHHHCcCHHH------HHHHHHHHhcc------cccccccccccccccccc
Confidence 123455677777677776 8888888887777644443 44567788888 899999999999987632
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
=.+ -.++..+|.++...|+.+++.+
T Consensus 245 --p~d----~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 245 --PDD----PLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp --TT-----HHHHHHHHHHHT----------
T ss_pred --ccc----cccccccccccccccccccccc
Confidence 122 3456678899999999988665
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=1.9e-05 Score=84.10 Aligned_cols=181 Identities=15% Similarity=0.045 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+.....+..+|..+...|+|++|...++++...+|........... ++ ..+...|++.+|...+++++...+.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~--la-~~~~~~~~~~~A~~~~~~~l~~~p~--- 102 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLD--LA-YAYYKSGDYAEAIAAADRFIRLHPN--- 102 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHH--HH-HHHHhcCCHHHHHHHHHHHHHHCcC---
Confidence 34556788999999999999999999999999887744322111111 11 6778899999999999999987552
Q ss_pred CCcchHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcccchhHH------------HHHHHHHHHHHhc
Q 002424 701 VDMDLKTEASLRHARTLLAA--------NQFSEAAAVAHSLFCMCYKFNLQVENA------------SVLLLLAEIHKKS 760 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~--------G~~~eAl~~l~~aL~~~~~~gd~~~~a------------~al~~la~i~~~~ 760 (924)
++. ...+.+.++.++... |++++|++.++.++......... ..+ .....+|.++...
T Consensus 103 -~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~a~~~~~~~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 103 -HPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA-PDAKKRMDYLRNRLAGKELYVARFYLKR 179 (235)
T ss_pred -CCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 346788888888876 89999999999988643321111 111 1234788999999
Q ss_pred CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 761 GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 761 G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
|++..|+..+.+++...- .....+.++..+|.++..+|+. ++|..+++.+
T Consensus 180 g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~--~~A~~~~~~l 229 (235)
T TIGR03302 180 GAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLK--DLAQDAAAVL 229 (235)
T ss_pred CChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 999999999998876632 2345578889999999999998 9999987765
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.36 E-value=6.4e-06 Score=84.84 Aligned_cols=140 Identities=16% Similarity=0.074 Sum_probs=121.5
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+.-.+.+...+|.-++..||+..|..-++++|+.- ....+++..+|.+|...|+.+.|...+++|+.+.-..|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD------PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 555577888999999999999999999999999842 23377899999999999999999999999999987665
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
.++++.|.-+|..|.+ ++|...+++++ ........+.++-.+|-|-+. .|....|.++|++|
T Consensus 104 ------dVLNNYG~FLC~qg~~--~eA~q~F~~Al----~~P~Y~~~s~t~eN~G~Cal~------~gq~~~A~~~l~ra 165 (250)
T COG3063 104 ------DVLNNYGAFLCAQGRP--EEAMQQFERAL----ADPAYGEPSDTLENLGLCALK------AGQFDQAEEYLKRA 165 (250)
T ss_pred ------chhhhhhHHHHhCCCh--HHHHHHHHHHH----hCCCCCCcchhhhhhHHHHhh------cCCchhHHHHHHHH
Confidence 4689999999999987 99999999985 456777889999999999998 88888899999988
Q ss_pred HHHH
Q 002424 862 SEEL 865 (924)
Q Consensus 862 ~~~f 865 (924)
++.=
T Consensus 166 L~~d 169 (250)
T COG3063 166 LELD 169 (250)
T ss_pred HHhC
Confidence 8743
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=1e-05 Score=98.68 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
.++..++|.+..++|++++|.++++.+++.+- ....+...+|.+..+.+++++|+..+.+++...- ..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p------~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFP------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS------SS 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC------CC
Confidence 45555555555555555555555555544321 2234444555555555555555555555554432 12
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+.++..+|.++.++|++ ++|.+++++++. .+. ..+.++..+|.++.. .|+.++|...+++|++.+
T Consensus 154 ~~~~~~~a~~l~~~g~~--~~A~~~y~~~~~---~~p---~~~~~~~~~a~~l~~------~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 AREILLEAKSWDEIGQS--EQADACFERLSR---QHP---EFENGYVGWAQSLTR------RGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHhcch--HHHHHHHHHHHh---cCC---CcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhh
Confidence 34445555555555555 555555555543 111 223444555555555 555555555555555544
No 53
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.00024 Score=78.75 Aligned_cols=236 Identities=18% Similarity=0.114 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFK--GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G--~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..||..++..+| ++.+|..+-..|+.+=+ +...++..-+..++..|+++.|.+.+..++.- |
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dr------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-------d- 520 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDR------YNAAALTNKGNIAFANGDLDKAAEFYKEALNN-------D- 520 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccc------cCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-------c-
Confidence 44566766666766 47777777666654311 11111111114667899999999999998872 3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..-.+++++.|...-.+|+.++|++++-.+-.+. ...+.+|..+|.||.-..++..|+++++++..+.- +++
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il------~nn~evl~qianiye~led~aqaie~~~q~~slip--~dp 592 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIP--NDP 592 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCC--CCH
Confidence 3367899999999999999999999987765543 34588999999999999999999999998876642 222
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-------HHhHHHhhCCHHH------H---------------HHHHHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQ-------ALPLILGHGGLEL------R---------------ARAFIAE 835 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~-------aLp~vl~~gd~~~------~---------------A~a~~~L 835 (924)
.++..||++|-+-|+- .+|..++-. .++.+.=.+..+. + ....+..
T Consensus 593 ----~ilskl~dlydqegdk--sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 593 ----AILSKLADLYDQEGDK--SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred ----HHHHHHHHHhhcccch--hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 3455688888777776 555444322 2222222222221 1 2223445
Q ss_pred HHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 836 AKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 836 Ar~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
|-|.+. .|.+.+|.+.++.-..-| ..--+++..|.++.-.+|..+. .+++....
T Consensus 667 asc~rr------sgnyqka~d~yk~~hrkf------pedldclkflvri~~dlgl~d~-key~~kle 720 (840)
T KOG2003|consen 667 ASCFRR------SGNYQKAFDLYKDIHRKF------PEDLDCLKFLVRIAGDLGLKDA-KEYADKLE 720 (840)
T ss_pred HHHHHh------cccHHHHHHHHHHHHHhC------ccchHHHHHHHHHhccccchhH-HHHHHHHH
Confidence 556665 777777777776655444 2345677788888888887664 34444433
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=0.0028 Score=71.43 Aligned_cols=200 Identities=12% Similarity=0.011 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++|-+|..++.+++.+.|...+++|+.+=|... ..|.+- +.-++...+-..|.+.++++..+.+ .|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~--~aWTLm----GHEyvEmKNt~AAi~sYRrAvdi~p----~D---- 397 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL--SAWTLM----GHEYVEMKNTHAAIESYRRAVDINP----RD---- 397 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh--HHHHHh----hHHHHHhcccHHHHHHHHHHHhcCc----hh----
Confidence 468889999999999999999999997644322 234432 2677889999999999999988633 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+++.+|..+--++=+.=|+-.+++++.. ...-.|++..+|++|.+.++.+.|+-++.+|+..... +
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e 465 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------E 465 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------c
Confidence 688999999999999999999999998763 3444778999999999999999999999999877653 5
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH---HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL---ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~---~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
..++..||.+|..+++. ++|...++..+......|.. ..+|+++ ||+-... .+++.+|-.|..++.
T Consensus 466 ~~~l~~LakLye~l~d~--~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k------~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDL--NEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKK------MKDFDEASYYATLVL 534 (559)
T ss_pred hHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHh------hcchHHHHHHHHHHh
Confidence 67889999999999999 99999999999977554443 4456555 6655555 555666655555443
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.26 E-value=0.0023 Score=79.60 Aligned_cols=235 Identities=13% Similarity=0.030 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+...++..|++++|..+++.+.+.-..........+ ...+...|++++|..+++++.. + |
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L-----i~~y~k~G~~~~A~~vf~~m~~--~-----d--- 390 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL-----VDLYSKWGRMEDARNVFDRMPR--K-----N--- 390 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH-----HHHHHHCCCHHHHHHHHHhCCC--C-----C---
Confidence 34555666666666666666666655543110000000111 1445566777777777666532 1 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
..+++.++..+...|+.++|+++++++... |.... ......+-..+.+.|..++|..++..... .+|....
T Consensus 391 -~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~---~~g~~p~ 461 (697)
T PLN03081 391 -LISWNALIAGYGNHGRGTKAVEMFERMIAE----GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSE---NHRIKPR 461 (697)
T ss_pred -eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHH---hcCCCCC
Confidence 234666666777777777777777766542 32222 22333444555677777777766654432 2333221
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
......|.+++...|.. ++|.+++++. |. ..+ +.++..|...+.. .|+.+.|....++.++.
T Consensus 462 -~~~y~~li~~l~r~G~~--~eA~~~~~~~-~~---~p~----~~~~~~Ll~a~~~------~g~~~~a~~~~~~l~~~- 523 (697)
T PLN03081 462 -AMHYACMIELLGREGLL--DEAYAMIRRA-PF---KPT----VNMWAALLTACRI------HKNLELGRLAAEKLYGM- 523 (697)
T ss_pred -ccchHhHHHHHHhcCCH--HHHHHHHHHC-CC---CCC----HHHHHHHHHHHHH------cCCcHHHHHHHHHHhCC-
Confidence 12234466667777776 7777776542 21 111 2345555555554 56666666665554321
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLA 907 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~ 907 (924)
+ ......+..++.+|...|+.+++.+.....++.|..
T Consensus 524 ---~--p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 524 ---G--PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred ---C--CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 1 112346788999999999999988888888777764
No 56
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.25 E-value=0.0021 Score=77.55 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHhCChHHHHHHHHHHHHHH--------------HhcCChh-HHHHHH
Q 002424 371 EIALLCLGMMHFHFGHPKQALDVLTEAVCLS--------------QQHSNDT-CLAYTL 414 (924)
Q Consensus 371 ~yall~la~~h~~fg~~~~A~~~l~Eai~~A--------------qe~~D~~-cl~~~l 414 (924)
--.+|..|..-+--|++++|...+.|.|+++ ++.||.. |+++.|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l 197 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL 197 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH
Confidence 4578888888777799999999999999864 5667766 777766
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.22 E-value=5.4e-05 Score=80.56 Aligned_cols=174 Identities=14% Similarity=0.049 Sum_probs=129.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...++++....+. + .....+++.+|.++...|++++|++.+++++.... +......++..
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~----~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~ 112 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPF----S-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPDADYAYYL 112 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC----c-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCchHHHHHH
Confidence 5678899999999999999886431 2 12456889999999999999999999999987543 22233457888
Q ss_pred HHHHHHhc--------CChhhhHHHHHHHHHHHHHhCCcH-----------HHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 753 LAEIHKKS--------GNAVLGIPYALASLSFCQLLNLDL-----------LKASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 753 la~i~~~~--------G~~~~Al~~l~~AL~la~~~g~~~-----------~~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
+|.++... |+++.|+..+.+++...-...... ........+|.+|...|+. .+|+..++
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~--~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY--VAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 88888776 788899998887765432211110 0112234688999999998 99999999
Q ss_pred HHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 814 QALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 814 ~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+++.. ..+....+.+++.+|+++.. .|++++|..+++.....|
T Consensus 191 ~al~~---~p~~~~~~~a~~~l~~~~~~------lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 191 TVVEN---YPDTPATEEALARLVEAYLK------LGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHH---CCCCcchHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhC
Confidence 98755 33334567889999999999 899999999887765443
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.20 E-value=0.00056 Score=75.76 Aligned_cols=243 Identities=18% Similarity=0.128 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
...-+=|..-...|+|..|..++.++.+ +++.. .+++-++.+.+=.+||++.|..++.++..+.. .|
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~----~~--- 151 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAG----DD--- 151 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCC----Cc---
Confidence 3344445555668888888888775442 23322 22222222566788888888888888876421 13
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHH-------------
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALA------------- 772 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~------------- 772 (924)
...+....+++++.+||+..|...+.++++ ......+++.+..++|.++|++...+..+..
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~------~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLE------MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHH------hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 567777888888888888888888888775 3445577888888888888888766654410
Q ss_pred -----H----------------HHHHHHhCCcHHH--HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-------
Q 002424 773 -----S----------------LSFCQLLNLDLLK--ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH------- 822 (924)
Q Consensus 773 -----A----------------L~la~~~g~~~~~--A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~------- 822 (924)
| |.-+++.--+..+ ......++.=+..+|.. ++|.++++++|+....-
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~--~~A~~~i~~~Lk~~~D~~L~~~~~ 303 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH--DEAQEIIEDALKRQWDPRLCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHhccChhHHHHHh
Confidence 0 0011111111111 13334456666778988 99999999888753210
Q ss_pred ----CCHH--------------HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 823 ----GGLE--------------LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 823 ----gd~~--------------~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
++.. .....+++||+.++. .+.+.+|-.+|+.|+..-.+.++ +..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k------~~~w~kA~~~leaAl~~~~s~~~-------~~~la~~ 370 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK------NKLWGKASEALEAALKLRPSASD-------YAELADA 370 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH------hhHHHHHHHHHHHHHhcCCChhh-------HHHHHHH
Confidence 1110 012456777777777 67788888888887776544444 4557778
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 002424 885 FDKLGRLAEREEAAALFK 902 (924)
Q Consensus 885 ~~~lGd~~~r~~aa~~f~ 902 (924)
|..+|++++++++-..-.
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 889999998877655443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0018 Score=73.22 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=153.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+..+|..++.+.+-.+-...+..|..+=|...+-- .+.. ...+..++|++|..-++.+.+| ||+ .+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvY-yHRg-----Qm~flL~q~e~A~aDF~Kai~L-------~pe-~~ 428 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVY-YHRG-----QMRFLLQQYEEAIADFQKAISL-------DPE-NA 428 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchh-HhHH-----HHHHHHHHHHHHHHHHHHHhhc-------Chh-hh
Confidence 78888888888888888888888887755544421 1111 3445678899999999988886 444 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.+...++-++.+++.+++++..++++...+-+. ..+...-|+|++-.++++.|...+..|+.+....+.-+.-+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 778888888999999999999999887744332 56778889999999999999999999999986644444444
Q ss_pred HHHHHHHHHHHH-cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLS-FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 788 ~al~~La~l~~~-lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.-+.+-|.+..+ -++ +.+|..+++.++.. ..+- -.|+.+||.+.+. +|..++|+++++++..+++
T Consensus 503 ~plV~Ka~l~~qwk~d--~~~a~~Ll~KA~e~----Dpkc--e~A~~tlaq~~lQ------~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 503 APLVHKALLVLQWKED--INQAENLLRKAIEL----DPKC--EQAYETLAQFELQ------RGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhhHhhhchhhh--HHHHHHHHHHHHcc----CchH--HHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHH
Confidence 444444444433 133 58899998888655 3322 2467799999998 8999999999999998886
Q ss_pred hh
Q 002424 867 VL 868 (924)
Q Consensus 867 ~l 868 (924)
..
T Consensus 569 t~ 570 (606)
T KOG0547|consen 569 TE 570 (606)
T ss_pred hH
Confidence 43
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=5.4e-05 Score=92.48 Aligned_cols=133 Identities=15% Similarity=0.052 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.+||.+...+|+|+||..+++.+.+..|.....++ . .+ .....++++++|...+++++...+ |
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~---~--~a-~~L~~~~~~eeA~~~~~~~l~~~p-----~-- 152 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI---L--ML-RGVKRQQGIEAGRAEIELYFSGGS-----S-- 152 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH---H--HH-HHHHHhccHHHHHHHHHHHhhcCC-----C--
Confidence 556677777777777777777777777776663222111 1 11 455567777777777777776422 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+.+++.+|.++...|+|++|.+.+++++.. ......++..+|.++...|+.++|...+++|++..
T Consensus 153 -~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 153 -SAREILLEAKSWDEIGQSEQADACFERLSRQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -CHHHHHHHHHHHHHhcchHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5666777777777777777777777777651 11335667777777777777777777777777665
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.17 E-value=0.00072 Score=78.51 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
..+...++..+...|+. ++|.+.+++++...-.. ...+.. .......+. .++...++..++++++.
T Consensus 263 ~~l~~~~a~~l~~~g~~--~~A~~~l~~~l~~~pd~---~~~~~~-~l~~~~~l~------~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 263 IALKIALAEHLIDCDDH--DSAQEIIFDGLKKLGDD---RAISLP-LCLPIPRLK------PEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHHHHHHHHHHHHCCCh--HHHHHHHHHHHhhCCCc---ccchhH-HHHHhhhcC------CCChHHHHHHHHHHHHh--
Confidence 45566688888889998 99999999998753322 111101 111112222 45666777777777642
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 867 VLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 867 ~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
-.+-.. +..+..+|.++...|+.+++.++..
T Consensus 329 -~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 329 -VDDKPK-CCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred -CCCChh-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 233332 6788899999999999998877655
No 62
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=9.5e-05 Score=72.87 Aligned_cols=124 Identities=23% Similarity=0.172 Sum_probs=98.0
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...|++..+...++.....++........ .+.++ ..++..|++++|...++.+..-. .|+.....+.++++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A--~l~lA-~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALA--ALQLA-KAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLAR 93 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHH--HHHHH-HHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHH
Confidence 35788888888888777766644322212 22222 67889999999999999998832 377788899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
+++..|+|++|+..++.. .+..+...+...+|.|+.+.|+.+.|+..+.+||
T Consensus 94 ~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999999999652 4455677789999999999999999999998875
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00012 Score=82.08 Aligned_cols=198 Identities=12% Similarity=0.001 Sum_probs=158.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.-+-.+++...|...+++++.|-+ . ...++.++|.=++.+.+...|++.++.++++|.+. .|++..
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp-------~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D------yRAWYG 403 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNP-------K-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD------YRAWYG 403 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCc-------c-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh------HHHHhh
Confidence 345578899999999999999733 2 56889999999999999999999999999877644 789999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|+.|.-.+.+.=|+-++++|+.+- -+++ +.+..||+++..+++. ++|..++.+++. .||. .+.++
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~k--PnDs----Rlw~aLG~CY~kl~~~--~eAiKCykrai~----~~dt--e~~~l 469 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELK--PNDS----RLWVALGECYEKLNRL--EEAIKCYKRAIL----LGDT--EGSAL 469 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcC--CCch----HHHHHHHHHHHHhccH--HHHHHHHHHHHh----cccc--chHHH
Confidence 9999999999999999999998762 2332 5677899999999999 999999998854 4553 66789
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL-AAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~-~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.-||+.|-. .++.++|..++++-++.....+-... .-.+..-||.-+...++.+++..++......
T Consensus 470 ~~LakLye~------l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 470 VRLAKLYEE------LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHH------HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 999999999 89999999999999986643332222 2333444888888888888776655544433
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.09 E-value=0.01 Score=76.18 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+...++..|++++|.++++.+.+.-. ..+...|..- ...+...|++++|..++..+... .+ .|.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi-~p~~~tynsL----I~ay~k~G~~deAl~lf~eM~~~--Gv---~PD 648 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNI-KGTPEVYTIA----VNSCSQKGDWDFALSIYDDMKKK--GV---KPD 648 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCChHHHHHH----HHHHHhcCCHHHHHHHHHHHHHc--CC---CCC
Confidence 46778888888899999999999998776421 1122222211 15667889999999999988762 22 222
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..+...++..+...|++++|.+.++++... | ......+...+...|.+.|+.+.|+..+.+.... |...
T Consensus 649 --~~TynsLI~a~~k~G~~eeA~~l~~eM~k~----G-~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~P 717 (1060)
T PLN03218 649 --EVFFSALVDVAGHAGDLDKAFEILQDARKQ----G-IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI----KLRP 717 (1060)
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC
Confidence 345667788888999999999999887652 2 2223446677778888999999998888765332 2211
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
-..+...|...+...|.. ++|.+++++... .|-. --...|..+-.++.. .|+.+.|...+++..+
T Consensus 718 -dvvtyN~LI~gy~k~G~~--eeAlelf~eM~~----~Gi~-Pd~~Ty~sLL~a~~k------~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 718 -TVSTMNALITALCEGNQL--PKALEVLSEMKR----LGLC-PNTITYSILLVASER------KDDADVGLDLLSQAKE 782 (1060)
T ss_pred -CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 123466677888888987 999999887642 2211 122344445455555 6777788877777654
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.08 E-value=0.001 Score=71.90 Aligned_cols=222 Identities=18% Similarity=0.107 Sum_probs=165.8
Q ss_pred cCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
-..+.|.+.|-+..+.=+ ..--..+.+. ...+.+|+.+.|..+.+.+..- +.+. .+.+..++..+|.=++
T Consensus 49 ~Q~dKAvdlF~e~l~~d~---~t~e~~ltLG---nLfRsRGEvDRAIRiHQ~L~~s-pdlT---~~qr~lAl~qL~~Dym 118 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDP---ETFEAHLTLG---NLFRSRGEVDRAIRIHQTLLES-PDLT---FEQRLLALQQLGRDYM 118 (389)
T ss_pred cCcchHHHHHHHHHhcCc---hhhHHHHHHH---HHHHhcchHHHHHHHHHHHhcC-CCCc---hHHHHHHHHHHHHHHH
Confidence 445677777776664211 0011233333 5678999999999999988772 3222 3457889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
+.|=++.|.+.+..+... ....-.++..+-.||.+..+-++|+..+.+-..+- .-......|.-.+.||....
T Consensus 119 ~aGl~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-GQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HhhhhhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CccchhHHHHHHHHHHHHHh
Confidence 999999999999977542 33345588889999999999999999887665554 23445566777777887665
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHH
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAF 878 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl 878 (924)
.-.+ +++|+.++..++..--. -.+|-..+|++.++ .|++++|++.++..++ .+|.-..+|+
T Consensus 192 ~~~~--~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~------~g~y~~AV~~~e~v~e-----Qn~~yl~evl 252 (389)
T COG2956 192 ASSD--VDRARELLKKALQADKK------CVRASIILGRVELA------KGDYQKAVEALERVLE-----QNPEYLSEVL 252 (389)
T ss_pred hhhh--HHHHHHHHHHHHhhCcc------ceehhhhhhHHHHh------ccchHHHHHHHHHHHH-----hChHHHHHHH
Confidence 4444 49999999998765432 35677899999999 8999999999998876 4788889999
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 002424 879 YLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 879 ~~lA~l~~~lGd~~~r~~ 896 (924)
-.|...|+.+|++++...
T Consensus 253 ~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 253 EMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHhCCHHHHHH
Confidence 999999999999987443
No 66
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.05 E-value=3.3e-05 Score=84.69 Aligned_cols=196 Identities=18% Similarity=0.063 Sum_probs=78.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.+++.. ...|+|++|..+++.+.+.++ +...+...+ ..+...|++.++...++++... .. ......
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~~---~~~~l~~~l----~~~~~~~~~~~~~~~l~~~~~~-~~-----~~~~~~ 147 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERDG---DPRYLLSAL----QLYYRLGDYDEAEELLEKLEEL-PA-----APDSAR 147 (280)
T ss_dssp --------------------------------------------H-HHHTT-HHHHHHHHHHHHH--T--------T-HH
T ss_pred cccccc-ccccccccccccccccccccc---ccchhhHHH----HHHHHHhHHHHHHHHHHHHHhc-cC-----CCCCHH
Confidence 344444 466777777777665544332 222222111 3456677777777777776542 11 112456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.+...|.++...|++++|++.+++++.... ....++..++.++...|++.++...+........ .++ .
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~--~~~----~ 215 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAP--DDP----D 215 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H--TSC----C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc--CHH----H
Confidence 667777777777777777777777776422 1234555666667777777765555554444331 111 1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
....+|.++..+|++ ++|+..+++++..- -+| ..++..+|.++.. .|+.++|....++|+..
T Consensus 216 ~~~~la~~~~~lg~~--~~Al~~~~~~~~~~--p~d----~~~~~~~a~~l~~------~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 216 LWDALAAAYLQLGRY--EEALEYLEKALKLN--PDD----PLWLLAYADALEQ------AGRKDEALRLRRQALRL 277 (280)
T ss_dssp HCHHHHHHHHHHT-H--HHHHHHHHHHHHHS--TT-----HHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHhcccccc--cccccccccccccc--ccc----ccccccccccccc------ccccccccccccccccc
Confidence 233466667777777 77777777765421 122 2345566666776 67777777777776553
No 67
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.05 E-value=3.5e-05 Score=67.12 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh-HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~-~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
.+.+..++|.++...|+|++|++.+++++..++..|+... .+.++..+|.++...|++++|+.++.+|++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 5678899999999999999999999999999888887765 5999999999999999999999999999999863
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.03 E-value=0.00082 Score=77.77 Aligned_cols=234 Identities=15% Similarity=0.103 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.....-|......|+|+.|.+.+..+.+. .+.. .+..-+....+..+|+++.|.+++.++... +|
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p--~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-------~~ 149 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQP--VVNYLLAAEAAQQRGDEARANQHLERAAEL-------AD 149 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CC
Confidence 3444456677777789999999777754332 2211 111111125668999999999999999774 33
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH-------
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF------- 776 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l------- 776 (924)
+.........+++....|++++|++.++++.+. ......++..++.+|.+.|+.++|+..+.+....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 334445556699999999999999999988763 2333678888999999999999998554332210
Q ss_pred ------------HH---Hh-CCc-------------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 777 ------------CQ---LL-NLD-------------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 777 ------------a~---~~-g~~-------------~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
.. .. +.. .....+...+|..+...|+. ++|...+++++. ...+.
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~--~~A~~~L~~~l~---~~~~~-- 296 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH--DTAQQIILDGLK---RQYDE-- 296 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHh---cCCCH--
Confidence 00 00 000 01223556678888889998 999999988876 23333
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
.....++ ++. .+++.+++..+++.++.+ ..-.+.+..+|+++...|+.+.+.++..
T Consensus 297 --~l~~l~~--~l~------~~~~~~al~~~e~~lk~~------P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 297 --RLVLLIP--RLK------TNNPEQLEKVLRQQIKQH------GDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred --HHHHHHh--hcc------CCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1112222 233 467777777777665432 2344577889999999999888777443
No 69
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.02 E-value=0.0012 Score=79.66 Aligned_cols=286 Identities=15% Similarity=0.068 Sum_probs=183.7
Q ss_pred HHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH--HHHh-h
Q 002424 594 AWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL--LKLQ-L 670 (924)
Q Consensus 594 ~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~--l~l~-l 670 (924)
.|..+-.+.++.+...+ +..-+. .....-+...--|..+..+++|+||-.++.++....+..+...... ...+ +
T Consensus 387 ~~~L~~~~~lsll~~~~--~~lP~~-~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL 463 (894)
T COG2909 387 EWQLFNGSELSLLLAWL--KALPAE-LLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQAL 463 (894)
T ss_pred hhhhhcccchHHHHHHH--HhCCHH-HHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHH
Confidence 67777666676665421 100000 0000012223346667789999999999999887665533332111 1111 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
....++.+|+.+.|.++.+.++..-+.. -......+....+.+...+|++++|+.+..++.+.++..+..+....+.
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~ 540 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSL 540 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2268899999999999999888743322 2344778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CCHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL---LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLE 826 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~---~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd~~ 826 (924)
+..++|....|+...|...-...+.-.+..+... ....++..+...|..+ +.+..-....+..-... ....
T Consensus 541 ~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~-----~~~~~ear~~~~~~~~~~~~~~ 615 (894)
T COG2909 541 LQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL-----DLAEAEARLGIEVGSVYTPQPL 615 (894)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH-----hhhhHHhhhcchhhhhcccchh
Confidence 9999999999955555443333332222111111 1223333333334321 22222222222222111 2223
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL-EDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l-~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
+..-++..||++... .|++++|...+++-.....+- ......+.+..-+..+-...||.+++..
T Consensus 616 ~~~~~~~~LA~l~~~------~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 616 LSRLALSMLAELEFL------RGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred HHHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 333344799999999 999999999999998888765 5677777777778888888899888654
No 70
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00025 Score=69.91 Aligned_cols=133 Identities=22% Similarity=0.101 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
..+..+......|+...+.+.++.+.. ..+.......+.+.+|.++...|++++|...+..++.-. .++.+...
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHH
Confidence 334444444578888888887777665 345555667889999999999999999999999887743 67788899
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
+.++||.++...|.. ++|+..|+.+ .+....+.+..++|.++++ .|+.++|+..+++|+
T Consensus 87 a~l~LA~~~~~~~~~--d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~------~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQGQY--DEALATLQQI-------PDEAFKALAAELLGDIYLA------QGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHhc-------cCcchHHHHHHHHHHHHHH------CCCHHHHHHHHHHhC
Confidence 999999999999998 9999999662 2334577889999999999 999999999999884
No 71
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.90 E-value=0.0013 Score=84.35 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+...+...|++++|.++++++...-........ ..+.....+...|++++|.++++.+... .+ .
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v---TynaLI~ay~k~G~ldeA~elf~~M~e~--gi-----~ 611 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI---TVGALMKACANAGQVDRAKEVYQMIHEY--NI-----K 611 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHc--CC-----C
Confidence 456778888888888888888888877653111211111 1111115667888888888888887662 11 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
....++..++..+.+.|++++|++.++++... |... ...+...+...+.+.|+++.|+..+.+... .|...
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k----~G~~p 682 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARK----QGIKL 682 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCC
Confidence 13456777788888888888888888877652 3222 244566667778888888888888776543 23222
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
. ..+...|...+...|.. ++|.+++++.... |-. --...|..|...+.. .|+.++|++++++...
T Consensus 683 d-~~tynsLI~ay~k~G~~--eeA~~lf~eM~~~----g~~-PdvvtyN~LI~gy~k------~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 683 G-TVSYSSLMGACSNAKNW--KKALELYEDIKSI----KLR-PTVSTMNALITALCE------GNQLPKALEVLSEMKR- 747 (1060)
T ss_pred C-HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH-
Confidence 1 23456677788888887 8888888775332 211 123457777777777 7888888887776532
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
.+... -..++..+-..+...|+.+++.+......+.|.
T Consensus 748 ---~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 748 ---LGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred ---cCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 12111 233555666778888888776665555544443
No 72
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.88 E-value=9.2e-05 Score=64.48 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH-HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~-~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
..+.++..+|.++..+|+. ++|+..+++++......|+... .+.++..+|.|+.. .|++++|+.++++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~------~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRY--DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR------LGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHh
Confidence 3567788999999999998 9999999999999888997764 59999999999999 9999999999999999
Q ss_pred HHHh
Q 002424 864 ELQV 867 (924)
Q Consensus 864 ~f~~ 867 (924)
++++
T Consensus 75 i~~k 78 (78)
T PF13424_consen 75 IFEK 78 (78)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 9874
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00047 Score=76.47 Aligned_cols=239 Identities=16% Similarity=0.026 Sum_probs=160.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC------cchH
Q 002424 633 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD------MDLK 706 (924)
Q Consensus 633 ~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D------~~~~ 706 (924)
.++.-.|+|++|...--..+..-+ .+ .-.+.+.. ......++.+.|..++.+.+.+.+... + ..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n-~~al~vrg--~~~yy~~~~~ka~~hf~qal~ldpdh~--~sk~~~~~~k~ 248 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TN-AEALYVRG--LCLYYNDNADKAINHFQQALRLDPDHQ--KSKSASMMPKK 248 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---ch-hHHHHhcc--cccccccchHHHHHHHhhhhccChhhh--hHHhHhhhHHH
Confidence 345567777777655443332211 11 11111111 345578889999999999888643221 1 0113
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
.+.+-..|.-....|+|..|.+.+.++|.+-. ......+.+.+++|.+..+.|+...|+..+..|+.|=. ..
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP--~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~------sy 320 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDP--SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS------SY 320 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCc--cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH------HH
Confidence 56677888889999999999999999998422 23345688999999999999999999999999988743 33
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
..+++.-|.+++.++.. ++|++-++.++..-.....+..-..+-..|=+.-+. ++|.
T Consensus 321 ikall~ra~c~l~le~~--e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRk---------------------d~yk 377 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKW--EEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRK---------------------DWYK 377 (486)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhh---------------------hHHH
Confidence 45667778888889988 999999999988765544444333333322222111 2333
Q ss_pred hhcC-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q 002424 867 VLED-----HELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 867 ~l~~-----~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~ 910 (924)
-++. ....+.++.++|.+||..-..-.+.++-+.|+..|.++.-
T Consensus 378 ilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~i 426 (486)
T KOG0550|consen 378 ILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTI 426 (486)
T ss_pred HhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 3333 3345778888999998876666677888888888887653
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00027 Score=81.06 Aligned_cols=205 Identities=18% Similarity=0.086 Sum_probs=152.8
Q ss_pred HHHHHhhCchHHHHhHHHHHHhhcCCCC-ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 592 ATAWEAYGSAPLTRVNTLIYATCFSDGS-SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 592 a~~W~~~G~~~ls~~~~~~~~~~~~~~~-~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
+.-|-..|+=.+.--...-+.+++++.. -..-.+.+....|-.++..|+-+.|.+.+..|-+.|++-..+. --+.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~-LYlg--- 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS-LYLG--- 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH-HHHH---
Confidence 3445555555444332233455666532 1223456677788889999999999999999999988543322 1122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch--hHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV--ENAS 748 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~--~~a~ 748 (924)
..+.+.+++..|..++.++.++++. || .+..-+|-+....+.|.+|..+++.++.-....+..- |+ -
T Consensus 388 --mey~~t~n~kLAe~Ff~~A~ai~P~----Dp----lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~-p 456 (611)
T KOG1173|consen 388 --MEYMRTNNLKLAEKFFKQALAIAPS----DP----LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE-P 456 (611)
T ss_pred --HHHHHhccHHHHHHHHHHHHhcCCC----cc----hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh-H
Confidence 5667899999999999999998663 64 4566688888899999999999999986544433322 22 2
Q ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 749 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 749 al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+.++|.++.+.+.+..|+..+++||.++.+. +.+...+|-++..+|.. +.|.+++..+|.+-
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------~~~~asig~iy~llgnl--d~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD------ASTHASIGYIYHLLGNL--DKAIDHFHKALALK 519 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc------hhHHHHHHHHHHHhcCh--HHHHHHHHHHHhcC
Confidence 68899999999999999999999999998532 45667799999999999 99999999998763
No 75
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.83 E-value=0.0018 Score=76.79 Aligned_cols=252 Identities=19% Similarity=0.088 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+..+++..++.+++.++|.+..+++++.-+... ...|++-. ...-..+++.+|+.+...++.-+. |
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-~~~whLLA----LvlSa~kr~~~Al~vvd~al~E~~-----~--- 545 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDS-AKAWHLLA----LVLSAQKRLKEALDVVDAALEEFG-----D--- 545 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-HHHHHHHH----HHHhhhhhhHHHHHHHHHHHHHhh-----h---
Confidence 6788999999999999999999999887644222 22344221 344578999999999998887333 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK---FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~---~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
-.......+.+-...||.++|+..+...++..+. ......+...+..++.++...+++..|.....++..+++.-+-
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 1222334455556689999999999999887763 2222336778889999999999999998888887777653222
Q ss_pred cH--------------------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 783 DL--------------------LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 783 ~~--------------------~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
.. ..-......+.+|...|.. ++|.-++.++--+. ..-+..|+..|+++..
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~--~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~- 696 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND--DEARSCLLEASKID------PLSASVYYLRGLLLEV- 696 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHhcc------hhhHHHHHHhhHHHHH-
Confidence 21 2233445688888889998 89988888775443 4666777777777777
Q ss_pred CCCCCCCChHHHHHHHHHHHH--------------HHHhhcCHHHH----------------HHHHHHHHHHHHhcCCHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASE--------------ELQVLEDHELA----------------AEAFYLIAIVFDKLGRLA 892 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~--------------~f~~l~~~~~~----------------~~vl~~lA~l~~~lGd~~ 892 (924)
.|...+|.+.+..|+. ++.+.|.+... .++.|.+|.++..+||..
T Consensus 697 -----~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 697 -----KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred -----HHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 6666666666665542 33444443322 357899999999999999
Q ss_pred HHHHHHHHHHHH
Q 002424 893 EREEAAALFKEY 904 (924)
Q Consensus 893 ~r~~aa~~f~~l 904 (924)
.+.+|-...-++
T Consensus 772 ~Aaecf~aa~qL 783 (799)
T KOG4162|consen 772 QAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHhh
Confidence 877776665555
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0003 Score=78.09 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=136.5
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
-++..|++..|.+++.-+..- |......+-.++..+..-+| ++..|..+...++. ..+..+.++.
T Consensus 428 ~~lk~~d~~~aieilkv~~~k-------dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------~dryn~~a~~ 494 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKK-------DNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------IDRYNAAALT 494 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhc-------cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------ccccCHHHhh
Confidence 557889999998887765441 32223344444444444433 78888888877765 2345577889
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
++|.+-...|++++|...+.+||. ++.--..|+.++|.+...+|.. ++|++++-..-.+.+ --+.+
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~l--deald~f~klh~il~------nn~ev 560 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNL--DEALDCFLKLHAILL------NNAEV 560 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCH--HHHHHHHHHHHHHHH------hhHHH
Confidence 999999999999999999988874 3445568899999999999998 999998877655544 45778
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
+.-+|..|-. .+++.+|+++|-+|.... .---.++.+||.+|...||...+=+
T Consensus 561 l~qianiye~------led~aqaie~~~q~~sli------p~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 561 LVQIANIYEL------LEDPAQAIELLMQANSLI------PNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHHHHHHHHH------hhCHHHHHHHHHHhcccC------CCCHHHHHHHHHHhhcccchhhhhh
Confidence 8888988888 889999999999886543 2233578899999999999887655
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.0017 Score=71.94 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+..+|.+++..|++++|.-.++.+.-.=|- .+ -.+-......-..|++..-..+...+.....
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy----~i--~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-------- 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD----NV--EAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-------- 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh----hh--hhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--------
Confidence 355677889999999999999999876643221 00 0111111233467888888888887777411
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..++-++-.+.++....+|+.|+.+.+.++.. ......+++++|.+....|+++.|.-.++.|..++ .
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p 365 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA------P 365 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc------h
Confidence 13344566677778888999999998888762 22346688889999999999999988888887776 1
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH-HhhhcCCCCC-----------------
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA-KCLLSDPSFS----------------- 846 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA-r~~la~~~~~----------------- 846 (924)
.+-++...|-+.|++.|.. .+|..+-+.++...- .-|+++.++| .+++-++..+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~--kEA~~~An~~~~~~~------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRF--KEANALANWTIRLFQ------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred hhHHHHHHHHHHHHhhchH--HHHHHHHHHHHHHhh------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 2235566677777788876 888887777766543 3456666665 4444332111
Q ss_pred ------------CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 847 ------------VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 847 ------------~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
..|....++..|++++..|..+. ....||.++.+...+.++-+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-------LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-------LHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-------HHHHHHHHHHHhhhHHHHHH
Confidence 05666778888888888775433 34456666777766666554
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00044 Score=74.42 Aligned_cols=197 Identities=17% Similarity=0.087 Sum_probs=144.8
Q ss_pred HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 664 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 664 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
|-.+-|++ ..+++.|-+.+|+..+++.+.-++ ..+....++.++.+..+...|+..+.+.++ ..
T Consensus 223 wwWk~Q~g-kCylrLgm~r~AekqlqssL~q~~---------~~dTfllLskvY~ridQP~~AL~~~~~gld------~f 286 (478)
T KOG1129|consen 223 WWWKQQMG-KCYLRLGMPRRAEKQLQSSLTQFP---------HPDTFLLLSKVYQRIDQPERALLVIGEGLD------SF 286 (478)
T ss_pred HHHHHHHH-HHHHHhcChhhhHHHHHHHhhcCC---------chhHHHHHHHHHHHhccHHHHHHHHhhhhh------cC
Confidence 44443444 788999999999999998887433 345677788899999999999999988765 23
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
......++..|.||...++.+.|+.++.+++.+- ....++.| -+|.-|.--|.| +-|+..++++|.+-...+
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~----~~nvEaiA--cia~~yfY~~~P--E~AlryYRRiLqmG~~sp 358 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH----PINVEAIA--CIAVGYFYDNNP--EMALRYYRRILQMGAQSP 358 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC----Cccceeee--eeeeccccCCCh--HHHHHHHHHHHHhcCCCh
Confidence 4556678888999999999999999998777652 22233332 244444446677 889999998877655443
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
..+..+|-|.+. .+.++-++..+++|+... ..+...++|.|.++.+....||...+.+|..
T Consensus 359 ------eLf~NigLCC~y------aqQ~D~~L~sf~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr 419 (478)
T KOG1129|consen 359 ------ELFCNIGLCCLY------AQQIDLVLPSFQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCFR 419 (478)
T ss_pred ------HHHhhHHHHHHh------hcchhhhHHHHHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence 467788888888 777888888888887754 4566777888888888888888877666543
No 79
>PLN03077 Protein ECB2; Provisional
Probab=97.72 E-value=0.048 Score=69.61 Aligned_cols=156 Identities=15% Similarity=0.064 Sum_probs=87.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+..+-..++..|++++|.++++.+.+.-.. .+.. ..+.....+...|++++|.++++++.. .| .
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~~~~----~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d----~ 455 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGLI-SYVV----VANALIEMYSKCKCIDKALEVFHNIPE-------KD----V 455 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCCC-cchH----HHHHHHHHHHHcCCHHHHHHHHHhCCC-------CC----e
Confidence 344444555556666666665555432110 0100 011111566678888888888776543 13 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH----------------------------------HHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS----------------------------------VLLLL 753 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~----------------------------------al~~l 753 (924)
.++..++..+...|++++|++.+++++.. ....... +...+
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHhC-----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 34666777778888888888888887641 1111100 01122
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
-..|.++|+.+.|+..+.+. .+ -..+...|...+...|.. ++|++++++..
T Consensus 531 i~~y~k~G~~~~A~~~f~~~--------~~--d~~s~n~lI~~~~~~G~~--~~A~~lf~~M~ 581 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH--------EK--DVVSWNILLTGYVAHGKG--SMAVELFNRMV 581 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc--------CC--ChhhHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 35566777777776666543 11 123455566777778887 88888888754
No 80
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.71 E-value=0.08 Score=64.81 Aligned_cols=279 Identities=13% Similarity=0.016 Sum_probs=186.4
Q ss_pred CCCChHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhh
Q 002424 617 DGSSLSDAALAHVKLIQHLA-VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMA 695 (924)
Q Consensus 617 ~~~~~d~~~~a~~~La~~~a-~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~ 695 (924)
..-+++-+++++.++|.++. ...++++|..+|+++..+-...+......-+..+....+...+... |...+++....+
T Consensus 51 ~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 51 FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 34467899999999999998 5678999999999887765442222111111112224444555555 999999988866
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 696 SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 696 ~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
...+ .........+..+.+.+..+|+..|++.++.....+...||+...+-+.+..|.++...|.+..+++.+.++..
T Consensus 130 ~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 130 ETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred hccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 5433 22223344444455555568999999999999999988899999999999999999999999999999999998
Q ss_pred HHHHh----CCcHHHHHHHHHHHHHHH--HcCCChHHHHHHHHHHHHhHHHhhCCH------------------------
Q 002424 776 FCQLL----NLDLLKASATLTLAELWL--SFGPNHAKMASNLIQQALPLILGHGGL------------------------ 825 (924)
Q Consensus 776 la~~~----g~~~~~A~al~~La~l~~--~lG~~~~~~Al~lLe~aLp~vl~~gd~------------------------ 825 (924)
.++.. ......-.++..+-++.+ ..|.. ..+...+.+.-..+.+..+.
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~--~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~ 285 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDV--KNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSG 285 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCC
Confidence 88866 012223334444444444 45554 45555544443333332221
Q ss_pred ------------HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc-------------C-------HHH
Q 002424 826 ------------ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-------------D-------HEL 873 (924)
Q Consensus 826 ------------~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~-------------~-------~~~ 873 (924)
...+-+|+.-|-+.+. .+..++|..++++|+...++.. . ...
T Consensus 286 ~~~~~f~wl~~~~l~~L~y~lS~l~~~~------~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l 359 (608)
T PF10345_consen 286 GTPLVFSWLPKEELYALVYFLSGLHNLY------KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYL 359 (608)
T ss_pred CceeEEeecCHHHHHHHHHHHHHHHHhh------ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHH
Confidence 2334445544544444 4445589999999998888766 0 123
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 874 AAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 874 ~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
.+-++..++......|+...+.......++...
T Consensus 360 ~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 360 QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQ 392 (608)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHh
Confidence 566777888888899999887777666665544
No 81
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0053 Score=63.71 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=143.0
Q ss_pred cCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
+.|+||.+++.+|...|. ..-+|..|-..+.++..+.-..+..| -+...+-.+.-..
T Consensus 28 ~k~eeAadl~~~Aan~yk--------------------laK~w~~AG~aflkaA~~h~k~~skh---Daat~YveA~~cy 84 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYK--------------------LAKNWSAAGDAFLKAADLHLKAGSKH---DAATTYVEAANCY 84 (288)
T ss_pred cchHHHHHHHHHHHHHHH--------------------HHHhHHHHHHHHHHHHHHHHhcCCch---hHHHHHHHHHHHh
Confidence 468999999888776654 23455566666666655544444222 2333444555557
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
+.++.++|..+++.+++++-..|.-...++-.+.+|++|-.- .+++.|+.++.+|.+....-......-..++-.|..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 788999999999999999988888888888999999999654 8889999999999888765555555556667677776
Q ss_pred HHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH-HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC---HHH
Q 002424 798 LSFGPNHAKMASNLIQQALPLILGHGGLELRARA-FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED---HEL 873 (924)
Q Consensus 798 ~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a-~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~---~~~ 873 (924)
..+|.. .+|+++++++....+.+.-.-=-+.- ++.-|-||+. ..+.-.+. +|++-|..+.- -.+
T Consensus 165 a~leqY--~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~------~~D~v~a~----~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 165 AQLEQY--SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC------KADEVNAQ----RALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHH--HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh------cccHHHHH----HHHHHHHhcCCcccccH
Confidence 778887 99999999998776654433223333 4456688888 44443332 33333333221 245
Q ss_pred HHHHHHHHHHHHHh
Q 002424 874 AAEAFYLIAIVFDK 887 (924)
Q Consensus 874 ~~~vl~~lA~l~~~ 887 (924)
++.-+-.|...+..
T Consensus 233 Eckflk~L~~aieE 246 (288)
T KOG1586|consen 233 ECKFLKDLLDAIEE 246 (288)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555556555543
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.69 E-value=0.00053 Score=67.59 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.....+|++++|...+.+++.+ ||. ...++..+|.++...|++++|+..+++++.. ......++..
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~-------~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~ 97 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMA-------QPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQ 97 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc-------CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHH
Confidence 4667888888888888888775 222 4677888888888899999999988888763 2234677888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++++|+..+.+|+.+.
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888899999888888888775
No 83
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.00053 Score=69.21 Aligned_cols=135 Identities=12% Similarity=-0.041 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC
Q 002424 723 FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP 802 (924)
Q Consensus 723 ~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~ 802 (924)
|..+...+...+. .......+.++..+|.++...|+++.|+..+.+|+.+.. .+...+.++..+|.++...|.
T Consensus 15 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 15 FTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred cccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCC
Confidence 4445555544332 133344577888889999999999999999988888742 333455678889999999998
Q ss_pred ChHHHHHHHHHHHHhHHHhhC-CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh--cCHH
Q 002424 803 NHAKMASNLIQQALPLILGHG-GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL--EDHE 872 (924)
Q Consensus 803 ~~~~~Al~lLe~aLp~vl~~g-d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l--~~~~ 872 (924)
. ++|+..++.++..-...+ .....+.++..+|+.... .|++..|+..+++|+..|++. .+|.
T Consensus 88 ~--~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~------~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 88 H--TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE------QGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred H--HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH------cccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8 999999998886533221 233455666666666667 899999999999999998876 4553
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.68 E-value=0.00032 Score=69.11 Aligned_cols=110 Identities=13% Similarity=0.039 Sum_probs=90.4
Q ss_pred HHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh
Q 002424 685 QKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV 764 (924)
Q Consensus 685 ~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~ 764 (924)
+.++++++.+ ||.. ....|..+...|++++|++.++.++.. ......++..+|.++...|+++
T Consensus 13 ~~~~~~al~~-------~p~~----~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 13 EDILKQLLSV-------DPET----VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHHc-------CHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHH
Confidence 3557777665 4432 456799999999999999999998763 3445788999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.|+..+.+|+.+.- .-+.++..+|.++..+|+. ++|+..++.++...
T Consensus 76 ~A~~~y~~Al~l~p------~~~~a~~~lg~~l~~~g~~--~eAi~~~~~Al~~~ 122 (144)
T PRK15359 76 TAINFYGHALMLDA------SHPEPVYQTGVCLKMMGEP--GLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Confidence 99999999998742 3357788899999999999 99999999997754
No 85
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.68 E-value=0.0083 Score=72.56 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
.+.+|.+|++.++...++.++.. ...-..-....-+..+++++...|.+ ..|++++-.+ ..+..+..+
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~-----~~n~~~~d~~dL~~d~a~al~~~~~~--~~Al~~l~~i-----~~~~~~~~~ 449 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLV-----EDNVWVSDDVDLYLDLADALTNIGKY--KEALRLLSPI-----TNREGYQNA 449 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHH-----HhcCChhhhHHHHHHHHHHHHhcccH--HHHHHHHHHH-----hcCccccch
Confidence 55666666666666666555421 12212344455677799999999988 9999998776 355666778
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
-++..+|+|++. .|.+++|++++++++... ..--++...|+.++..+|+++++.++
T Consensus 450 ~vw~~~a~c~~~------l~e~e~A~e~y~kvl~~~------p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 450 FVWYKLARCYME------LGEYEEAIEFYEKVLILA------PDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred hhhHHHHHHHHH------HhhHHHHHHHHHHHHhcC------CCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 899999999999 899999999999998754 23345677889999999999865543
No 86
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.001 Score=75.22 Aligned_cols=174 Identities=16% Similarity=0.031 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.+.|+.+...++|++|.+-++.+..+-|+.- +..+.+. -...+.++++++...++....-|+.
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~---~~~iQl~---~a~Yr~~k~~~~m~~Fee~kkkFP~-------- 460 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA---YAYIQLC---CALYRQHKIAESMKTFEEAKKKFPN-------- 460 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhCCC--------
Confidence 5789999999999999999999999887755322 2222222 3456778999999999999887774
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-SGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~-~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..++...-++++..+++|+.|.+.+..++++-.........+--+..+|.+..+ .++..+|..++.+|+++= .
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D------p 534 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD------P 534 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC------c
Confidence 458899999999999999999999999998755433333344445555544433 266777777777777652 2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
--=.|...||.+.+++|.. ++|+++++.++-.++.
T Consensus 535 kce~A~~tlaq~~lQ~~~i--~eAielFEksa~lArt 569 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKI--DEAIELFEKSAQLART 569 (606)
T ss_pred hHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHh
Confidence 2235677899999999999 9999999999988774
No 87
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.65 E-value=0.32 Score=59.60 Aligned_cols=223 Identities=13% Similarity=-0.017 Sum_probs=155.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHcccchhH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTG-VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC-----MCYKFNLQVEN 746 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~-~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~-----~~~~~gd~~~~ 746 (924)
...+-+|+|..|...++.+.......+. ..........+..|.+....|+.+.|+..+....- ..+........
T Consensus 369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ 448 (608)
T PF10345_consen 369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELY 448 (608)
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHH
Confidence 4567899999999999988876543331 11234578889999999999999999999973321 11112222334
Q ss_pred HHHHHHHHHHHHhcCChhh----hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHH-H
Q 002424 747 ASVLLLLAEIHKKSGNAVL----GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLI-L 820 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~----Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~v-l 820 (924)
+-+.++++.|+...+.... .-..+.+--..+..+.+.....-....++.+.. ..+ -..++...+.+.|-.. .
T Consensus 449 ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ne~k~~l~~~L~~~~~ 526 (608)
T PF10345_consen 449 ILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNT--FEPFSSNEAKRHLQEALKMANN 526 (608)
T ss_pred HHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhh--CCccccHHHHHHHHHHHHHHHH
Confidence 5578888889987777654 333333222334444444433333332443332 222 1258999999999999 7
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL---EDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l---~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
..++....+.++..++-..+. ++..+.......|...+.+. ++..+.--.-..++..++..|+.++++..
T Consensus 527 ~~~n~~l~~~~L~lm~~~lf~-------~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 527 KLGNSQLLAILLNLMGHRLFE-------GDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred hhccchHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 999999999999999966664 67777777777799999988 88888777888899999999999998887
Q ss_pred HHHHHHH
Q 002424 898 AALFKEY 904 (924)
Q Consensus 898 a~~f~~l 904 (924)
...+.++
T Consensus 600 ~~~~~~~ 606 (608)
T PF10345_consen 600 RQQLDRV 606 (608)
T ss_pred HHHHHHh
Confidence 7766654
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0016 Score=70.31 Aligned_cols=225 Identities=14% Similarity=0.015 Sum_probs=157.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
..+|.++.+.|-+.+|...|+.+++.|+- .+. ...+. ..+-+..+...|...+.+-+..++ + ...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dT-fllLs-----kvY~ridQP~~AL~~~~~gld~fP--~------~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDT-FLLLS-----KVYQRIDQPERALLVIGEGLDSFP--F------DVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhH-HHHHH-----HHHHHhccHHHHHHHHhhhhhcCC--c------hhh
Confidence 67888889999999999999999988762 221 11222 677778888888888888777544 1 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.+...++++-++|++++|++++...+.. ...++.+.-..|.-|.-.|+|+-|+.++++-|.+-...+ +
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp------e 359 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKL------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP------E 359 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhc------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh------H
Confidence 5677888899999999999999888763 223344444556667778888888888888877654322 2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l 868 (924)
..+++|.+...-+.. +-++-.+++++..... ....|.+++.||-+... .|+..-|..+++-|+.
T Consensus 360 Lf~NigLCC~yaqQ~--D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~------iGD~nlA~rcfrlaL~----- 423 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQI--DLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVT------IGDFNLAKRCFRLALT----- 423 (478)
T ss_pred HHhhHHHHHHhhcch--hhhHHHHHHHHhhccC---cchhhhhhhccceeEEe------ccchHHHHHHHHHHhc-----
Confidence 344555554444554 7778888887776542 33677788888877666 6888777777777754
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 869 EDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 869 ~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
.-....+++..||.+-+..|+...+...
T Consensus 424 -~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 424 -SDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred -cCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 2345567888888888888888876553
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.63 E-value=0.0092 Score=62.35 Aligned_cols=171 Identities=14% Similarity=0.015 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
|.....+...|......|+|.+|...|+.....||......-..+.+ + ..+...|+|.+|...+++....++...
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~l--a-~a~y~~~~y~~A~~~~~~fi~~yP~~~-- 76 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLML--A-YAYYKQGDYEEAIAAYERFIKLYPNSP-- 76 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHH--H-HHHHHTT-HHHHHHHHHHHHHH-TT-T--
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHH--H-HHHHHcCCHHHHHHHHHHHHHHCCCCc--
Confidence 34567788999999999999999999999999999755433222221 1 677899999999999999999877533
Q ss_pred CcchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHcccc-----------hhHHHHHHHHHHHHHh
Q 002424 702 DMDLKTEASLRHARTLLAAN-----------QFSEAAAVAHSLFCMCYKFNLQ-----------VENASVLLLLAEIHKK 759 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G-----------~~~eAl~~l~~aL~~~~~~gd~-----------~~~a~al~~la~i~~~ 759 (924)
....+.+.+|....... ...+|+..++..+...-..... ...++--+..|..|.+
T Consensus 77 ---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 77 ---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYK 153 (203)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26688888888875543 2347777777777644422111 1113346778999999
Q ss_pred cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 760 SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 760 ~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
.|.+..|+..+...+ ...-+....-.|+..|+..+..+|..
T Consensus 154 ~~~y~aA~~r~~~v~---~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVI---ENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp TT-HHHHHHHHHHHH---HHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred cccHHHHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 999999988877654 45666777778999999999999997
No 90
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0011 Score=76.35 Aligned_cols=205 Identities=13% Similarity=0.022 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.....+|..+.--|++.+|.+.+-.+-..=+..+. .|+ ..+ ...-..|+.++|..++..+..+++...
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp--aWl---~fg-hsfa~e~EhdQAmaaY~tAarl~~G~h------ 380 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP--AWL---AFG-HSFAGEGEHDQAMAAYFTAARLMPGCH------ 380 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH--HHH---HHh-HHhhhcchHHHHHHHHHHHHHhccCCc------
Confidence 56677787888889999999999877765443333 232 111 334468999999999999999877544
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH-
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL- 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~- 784 (924)
.=.+-+|.-+.+.+++.-|-+.+.+++.+|... .-++..+|-|....+.+.+|..++..++..........
T Consensus 381 --lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~ 452 (611)
T KOG1173|consen 381 --LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI 452 (611)
T ss_pred --chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc
Confidence 224557777889999999999999999887633 33667788888899999999999999997776665544
Q ss_pred -HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 785 -LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 785 -~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
++.. ..+||.++..++.. ++|+..++.+|...-.. +.++..+|-+|.- .|.+..|++++.+|+.
T Consensus 453 ~w~p~-~~NLGH~~Rkl~~~--~eAI~~~q~aL~l~~k~------~~~~asig~iy~l------lgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 453 FWEPT-LNNLGHAYRKLNKY--EEAIDYYQKALLLSPKD------ASTHASIGYIYHL------LGNLDKAIDHFHKALA 517 (611)
T ss_pred chhHH-HHhHHHHHHHHhhH--HHHHHHHHHHHHcCCCc------hhHHHHHHHHHHH------hcChHHHHHHHHHHHh
Confidence 4444 55699999999998 99999999998876543 5578889999998 8999999999999997
Q ss_pred HH
Q 002424 864 EL 865 (924)
Q Consensus 864 ~f 865 (924)
+-
T Consensus 518 l~ 519 (611)
T KOG1173|consen 518 LK 519 (611)
T ss_pred cC
Confidence 54
No 91
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.62 E-value=0.0016 Score=62.03 Aligned_cols=114 Identities=20% Similarity=0.116 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
++.+..+..+-..|+.++|+..+++++.. | +.....++++.+|..+...|++++|+..+.+++. +..++.+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcccc
Confidence 46788999999999999999999999883 3 2344578999999999999999999999988764 44444455
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
..+...++.++..+|++ ++|+..+-.++..-.. .+.+|...+
T Consensus 75 ~~l~~f~Al~L~~~gr~--~eAl~~~l~~la~~~~---~y~ra~~~y 116 (120)
T PF12688_consen 75 AALRVFLALALYNLGRP--KEALEWLLEALAETLP---RYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 56666688888999999 9999998777654333 666666543
No 92
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.015 Score=61.17 Aligned_cols=211 Identities=16% Similarity=0.029 Sum_probs=147.9
Q ss_pred hhhhhHHHHHHHHHHhhCchHHHHhH---HHHHHhhcCCC-CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc
Q 002424 582 QLVGSSYLLRATAWEAYGSAPLTRVN---TLIYATCFSDG-SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657 (924)
Q Consensus 582 ~l~g~~~~l~a~~W~~~G~~~ls~~~---~~~~~~~~~~~-~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~ 657 (924)
+........+-..|..++...--.+. +.+ .+ +... .-.++.=..+-.+..+....|+.+.|...+++...+||
T Consensus 7 ~~~~~~l~~~~~~wr~~~~rnseevv~l~~~~-~~-~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp- 83 (289)
T KOG3060|consen 7 DVSWEELRDQMRKWREETVRNSEEVVQLGSEV-LN-YSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP- 83 (289)
T ss_pred HHHHHHHHHHHHHHHhccccCHHHHHHHHHHH-HH-HhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-
Confidence 34444444555589888776544442 222 11 2222 24556666777788888899999999999999999995
Q ss_pred cCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 658 VSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 658 ~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
+..+...+.- .+.-..|+|.+|.+++++++. . ||. -....-+..-++.++|.-.+|++.+...++.+
T Consensus 84 -~S~RV~~lka----m~lEa~~~~~~A~e~y~~lL~--d-----dpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060|consen 84 -GSKRVGKLKA----MLLEATGNYKEAIEYYESLLE--D-----DPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF 150 (289)
T ss_pred -CChhHHHHHH----HHHHHhhchhhHHHHHHHHhc--c-----Ccc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 4445444441 355578999999999999988 2 333 34455588888899999999999999998865
Q ss_pred HHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHH
Q 002424 738 YKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQAL 816 (924)
Q Consensus 738 ~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aL 816 (924)
-.. ..++..++++|...|++.+|.-++.+.+-+- |+.. ....++|+++.-+|-. ..+-|+.++++++
T Consensus 151 ~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-----P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 151 MND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-----PFNP-LYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred cCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-----CCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 422 6789999999999999999999998876542 1111 1223466666555543 3478999999998
Q ss_pred hHHH
Q 002424 817 PLIL 820 (924)
Q Consensus 817 p~vl 820 (924)
.+..
T Consensus 219 kl~~ 222 (289)
T KOG3060|consen 219 KLNP 222 (289)
T ss_pred HhCh
Confidence 8754
No 93
>PLN03077 Protein ECB2; Provisional
Probab=97.55 E-value=0.15 Score=65.12 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=121.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++++|...+... . .| ..+++.++..+...|+.++|++.++++... |....... ...
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-~-------~d----~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----g~~Pd~~T-~~~ 594 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-E-------KD----VVSWNILLTGYVAHGKGSMAVELFNRMVES----GVNPDEVT-FIS 594 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-C-------CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCccc-HHH
Confidence 4555678888888777664 1 13 356777888888999999999999887652 33322222 222
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+-..+.+.|..++|..++.+.. ..+|..... .....|..++...|.. ++|.+++++. |. ..+ +.++
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~---~~~gi~P~~-~~y~~lv~~l~r~G~~--~eA~~~~~~m-~~---~pd----~~~~ 660 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSME---EKYSITPNL-KHYACVVDLLGRAGKL--TEAYNFINKM-PI---TPD----PAVW 660 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHH---HHhCCCCch-HHHHHHHHHHHhCCCH--HHHHHHHHHC-CC---CCC----HHHH
Confidence 2245778899999888887553 233432222 3345577888888987 9999988873 31 122 2333
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLAL 908 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~ 908 (924)
..|-..+.. .++.+.+....++.++ ++ ......+..++.+|...|+.+++.+.....++-|...
T Consensus 661 ~aLl~ac~~------~~~~e~~e~~a~~l~~----l~--p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 661 GALLNACRI------HRHVELGELAAQHIFE----LD--PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHHHH------cCChHHHHHHHHHHHh----hC--CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 333333333 3555544443333333 21 1234567889999999999999888888888777643
No 94
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.51 E-value=0.00097 Score=60.69 Aligned_cols=81 Identities=25% Similarity=0.173 Sum_probs=72.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccch---hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQV---ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~---~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
..+.|||.+|++.+.+....+...+... .-..+++.+|.++...|++++|+..+.+|+.++++.++....+.++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3689999999999999999888766655 5566899999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 002424 794 AELW 797 (924)
Q Consensus 794 a~l~ 797 (924)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 8764
No 95
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.42 E-value=0.0027 Score=78.96 Aligned_cols=233 Identities=11% Similarity=0.009 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..+...++..|++++|+.+++++...- ...... .+......+...|++++|.+++..+... ...
T Consensus 288 ~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd~~---t~~~ll~a~~~~g~~~~a~~i~~~m~~~--g~~--- 357 (697)
T PLN03081 288 KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSIDQF---TFSIMIRIFSRLALLEHAKQAHAGLIRT--GFP--- 357 (697)
T ss_pred CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHH---HHHHHHHHHHhccchHHHHHHHHHHHHh--CCC---
Confidence 466777888888888888888888888775431 111111 1121115667788888888888877663 111
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
+ -..+...++..+.+.|+.++|.+.++++.. ....++..+...|.+.|+.++|+..+.+.... |.
T Consensus 358 ~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----g~ 422 (697)
T PLN03081 358 L--DIVANTALVDLYSKWGRMEDARNVFDRMPR---------KNLISWNALIAGYGNHGRGTKAVEMFERMIAE----GV 422 (697)
T ss_pred C--CeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC
Confidence 1 245667788888888888888888876632 12345677777888888888888888775532 22
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
..- ..+...+-..+...|.. ++|.+++++.... .| ..-....|..+..++.. .|+.++|.+.+++
T Consensus 423 ~Pd-~~T~~~ll~a~~~~g~~--~~a~~~f~~m~~~---~g-~~p~~~~y~~li~~l~r------~G~~~eA~~~~~~-- 487 (697)
T PLN03081 423 APN-HVTFLAVLSACRYSGLS--EQGWEIFQSMSEN---HR-IKPRAMHYACMIELLGR------EGLLDEAYAMIRR-- 487 (697)
T ss_pred CCC-HHHHHHHHHHHhcCCcH--HHHHHHHHHHHHh---cC-CCCCccchHhHHHHHHh------cCCHHHHHHHHHH--
Confidence 211 12234455566677877 8888888776542 11 12233456666766666 7777777666543
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 863 EELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 863 ~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
++... -..++..+...+...|+.+.+..++...
T Consensus 488 -----~~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 488 -----APFKP-TVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred -----CCCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 33221 2346777888889999999888776544
No 96
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.0025 Score=64.28 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK 759 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~ 759 (924)
.|..+...+..++.. .+....+.++++.|.++...|++++|+..+++++.+. .+......++..+|.++..
T Consensus 14 ~~~~~~~~l~~~~~~------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 14 TFTIVADILLRILPT------TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred ccccchhhhhHhccC------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHH
Confidence 355555555444321 1233478899999999999999999999999998752 2334456789999999999
Q ss_pred cCChhhhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 760 SGNAVLGIPYALASLSFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 760 ~G~~~~Al~~l~~AL~la~~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.|+++.|+..+.+|+.+-...+. ....+.+...+|.+...+|+. ++|+..+++++....
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~--~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS--EIAEAWFDQAAEYWK 144 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH--HHHHHHHHHHHHHHH
Confidence 99999999999999987432221 112223333344444477776 878877777776643
No 97
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.38 E-value=0.044 Score=66.68 Aligned_cols=262 Identities=18% Similarity=0.079 Sum_probs=160.5
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHH-HhhcCCC----CChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIY-ATCFSDG----SSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR 662 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~-~~~~~~~----~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~ 662 (924)
-..--.+|..+-...++.+.+.+- +..+-.. ...+-.+....=.|.+...+|++++|.++.++++...+......
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 344457888888888888876441 2222222 22333444444456666779999999999999999877544422
Q ss_pred HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 002424 663 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 742 (924)
Q Consensus 663 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd 742 (924)
.++++...+..+.-+|++++|..+..++...++..+ -......+.+..+.++.++|+-..|...........+-...
T Consensus 496 -r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 496 -RIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred -hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 233333333788899999999999999999877665 45667778889999999999433333333222222221122
Q ss_pred chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 743 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 743 ~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
.....-.+...+.++...-+.+.+...+..++++..... .+.....+...|+.+....|+. ++|...++++......
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl--~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL--DKALAQLDELERLLLN 650 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhcC
Confidence 222111223333333333335555555555555553333 3333344445799999999999 9999999999888766
Q ss_pred h-CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 822 H-GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 822 ~-gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
. ...+-.|.++..-.....+ .|+.+.+..++.+
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~------qg~~~~a~~~l~~ 684 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLA------QGDKELAAEWLLK 684 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcc------cCCHHHHHHHHHh
Confidence 6 4555555555554444555 5666555555554
No 98
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.38 E-value=0.022 Score=61.32 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=120.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+|++|...++++....+ +......+.+.+|.++...|+|++|...+++.+... .+......++..
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP-----~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~~~~a~Y~ 111 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDYVLYM 111 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCchHHHHHH
Confidence 466789999999999999988654 334466778999999999999999999999998843 344455778888
Q ss_pred HHHHHHhcCC-----------hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHH
Q 002424 753 LAEIHKKSGN-----------AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLIL 820 (924)
Q Consensus 753 la~i~~~~G~-----------~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl 820 (924)
+|.++...+. ..+=.....+|+ ..+-.+-..-... +..+|...+..+-..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~----------------~~~~~li~~yP~S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAF----------------RDFSKLVRGYPNSQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHH----------------HHHHHHHHHCcCChhHHHHHHHHHHHHHH--
Confidence 8877655441 111111112222 2222222222222 223333333333211
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
-|.--+..|+-|.. .|.+..|+.-++..++.|. .-....++++.+...|..+|+.+++.+++..
T Consensus 174 -------la~~e~~ia~~Y~~------~~~y~AA~~r~~~v~~~Yp---~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 174 -------LAKYELSVAEYYTK------RGAYVAVVNRVEQMLRDYP---DTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred -------HHHHHHHHHHHHHH------cCchHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 12222345566666 6777777777777776664 4455778999999999999999998887765
Q ss_pred H
Q 002424 901 F 901 (924)
Q Consensus 901 f 901 (924)
.
T Consensus 238 l 238 (243)
T PRK10866 238 I 238 (243)
T ss_pred H
Confidence 4
No 99
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.36 E-value=0.042 Score=59.15 Aligned_cols=173 Identities=16% Similarity=0.026 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.......|......|+|++|...++.+...+|......-. .+.++ ..++..+++.+|...+++...+.+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a--~l~la-~ayy~~~~y~~A~~~~e~fi~~~P~~~----- 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQV--QLDLI-YAYYKNADLPLAQAAIDRFIRLNPTHP----- 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--HHHHH-HHHHhcCCHHHHHHHHHHHHHhCcCCC-----
Confidence 4456778888889999999999999999988844322111 11222 678899999999999999999877433
Q ss_pred hHHHHHHHHHHHHHHcC---------------CHH---HHHHHHHHHHHHHHHcccchh--------------HHHHHHH
Q 002424 705 LKTEASLRHARTLLAAN---------------QFS---EAAAVAHSLFCMCYKFNLQVE--------------NASVLLL 752 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G---------------~~~---eAl~~l~~aL~~~~~~gd~~~--------------~a~al~~ 752 (924)
....+.+.+|......+ |.. .|++.+++.+...- +..- -++--+.
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP---~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP---NSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc---CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 25788888888765554 233 45566666655322 2211 1223557
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
.|..|.+.|.+..|+.-+...+ ..+-.....-+|+..|.+.+..+|.. ++|.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~---~~Yp~t~~~~eal~~l~~ay~~lg~~--~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQML---RDYPDTQATRDALPLMENAYRQLQLN--AQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHH---HHCCCCchHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 7888999999988877776554 46666677888999999999999999 88877543
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.0041 Score=59.23 Aligned_cols=101 Identities=26% Similarity=0.212 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
+++..+|.+|...|++++|++++.+|+.. |. .....++++.+|.++..+|++ ++|+.++++.+. ++.+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~----gL~~~~~~~a~i~lastlr~LG~~--deA~~~L~~~~~---~~p~~~ 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA----GLSGADRRRALIQLASTLRNLGRY--DEALALLEEALE---EFPDDE 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH---HCCCcc
Confidence 57889999999999999999999999873 32 335567899999999999999 999999998864 445544
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
....+...+|-+... .|++.+|+..+-.++.
T Consensus 73 ~~~~l~~f~Al~L~~------~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYN------LGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH
Confidence 555555667777777 8999999999888775
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.31 E-value=0.0032 Score=58.61 Aligned_cols=103 Identities=15% Similarity=0.023 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+..+|+|++|...++.+...++........ .+.++ ..++..|++++|...++.+....+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~ 74 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNA--HYWLG-EAYYAQGKYADAAKAFLAVVKKYPKS-----PK 74 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH--HHHHH-HHHHhhccHHHHHHHHHHHHHHCCCC-----Cc
Confidence 467889999999999999999999999887643221111 11111 67889999999999999998864321 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
...+....+.++...|++++|...+++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3577899999999999999999999998874
No 102
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.044 Score=57.47 Aligned_cols=179 Identities=10% Similarity=-0.034 Sum_probs=127.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
.+....+|+.|...+..+..-...-......+.+.=..|.+........++..++.+|..+..++|-+.-.|.++-.-|.
T Consensus 40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 33445566666666666654333333334445555555556667777788888888888888889998888888887777
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHH
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA 875 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~ 875 (924)
+... -.| +.|+.++.+++..+.+.+.....-..+--.++.+.. ...+.+|--.+.+=..++..+.....++
T Consensus 120 ~len-v~P--d~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr------l~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 120 ALEN-VKP--DDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR------LEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred Hhhc-CCH--HHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh------hHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 7643 345 999999999999988766555544555556677776 5666666667777777777888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 876 EAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 876 ~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
..+..+-.+|....|...++.+.....|
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 8888888888888888887776555333
No 103
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.27 E-value=0.03 Score=58.55 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
+.....++..|...+..|+|.+|++.++.+.... ........+++.+|.++...|++..|+..+.+-+.. +-..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~---P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~---yP~~ 75 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY---PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL---YPNS 75 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----TT-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCC
Confidence 3467889999999999999999999999987743 445566788999999999999999999998876654 3333
Q ss_pred HHHHHHHHHHHHHHHHcCCC---------hHHHHHHHHHHHHhHHHhhCCHHHHH------------HHHHHHHHhhhcC
Q 002424 784 LLKASATLTLAELWLSFGPN---------HAKMASNLIQQALPLILGHGGLELRA------------RAFIAEAKCLLSD 842 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~---------~~~~Al~lLe~aLp~vl~~gd~~~~A------------~a~~~LAr~~la~ 842 (924)
.....|+..+|..+..+... ...+|...++..+...=.+.- ...| .--+..|+-+..
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-~~~A~~~l~~l~~~la~~e~~ia~~Y~~- 153 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-AEEAKKRLAELRNRLAEHELYIARFYYK- 153 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44556677777765543311 224666666666544322211 1122 222334555555
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.|.+..|+..++..++.|- +.....+++..++..|..+|+...++.
T Consensus 154 -----~~~y~aA~~r~~~v~~~yp---~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 -----RGKYKAAIIRFQYVIENYP---DTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -----TT-HHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 7889999988888887764 555667799999999999999996544
No 104
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.27 E-value=0.0055 Score=71.46 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=117.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
.+..++..|+..+|..+|.+|.+--|. ...+|..+. .......+++.|+.++.++... + +...++
T Consensus 590 ~ake~w~agdv~~ar~il~~af~~~pn--seeiwlaav----Kle~en~e~eraR~llakar~~----s-----gTeRv~ 654 (913)
T KOG0495|consen 590 YAKEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAV----KLEFENDELERARDLLAKARSI----S-----GTERVW 654 (913)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHH----HHhhccccHHHHHHHHHHHhcc----C-----Ccchhh
Confidence 345566679999999999987765442 234777664 4567888999999999998763 1 145778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
+--+.+...+|+.++|++++++++..+... ....+++|+|+.+.++.+.|...+.+.+..|=. -- -..
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~i-----pLW 722 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SI-----PLW 722 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-Cc-----hHH
Confidence 888888999999999999999998854332 567889999999999999999888887776621 11 123
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
+.|+.+-...|.. -+|+.+|+.+.
T Consensus 723 llLakleEk~~~~--~rAR~ildrar 746 (913)
T KOG0495|consen 723 LLLAKLEEKDGQL--VRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHhcch--hhHHHHHHHHH
Confidence 4567777777776 77887777664
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0042 Score=65.69 Aligned_cols=159 Identities=17% Similarity=0.078 Sum_probs=121.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.+++..+-..|+-+.++.++..+....+ ... ..+.. .+...++.|+|.+|...++++..+.+ . .++
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~---~d~-~ll~~--~gk~~~~~g~~~~A~~~~rkA~~l~p----~----d~~ 135 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP---KDR-ELLAA--QGKNQIRNGNFGEAVSVLRKAARLAP----T----DWE 135 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc---ccH-HHHHH--HHHHHHHhcchHHHHHHHHHHhccCC----C----Chh
Confidence 7888888889998888888776443322 111 11111 12678899999999999999988633 2 478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
++..+|-.+.+.|++++|..-+.+++++.. .+..+..++|..+.-.|+++.|..++..+..... --..
T Consensus 136 ~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~------ad~~ 203 (257)
T COG5010 136 AWNLLGAALDQLGRFDEARRAYRQALELAP------NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA------ADSR 203 (257)
T ss_pred hhhHHHHHHHHccChhHHHHHHHHHHHhcc------CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC------CchH
Confidence 999999999999999999999999998643 3467889999999999999999999987755442 1125
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
+..+|+.++-..|+. .+|.++..+=
T Consensus 204 v~~NLAl~~~~~g~~--~~A~~i~~~e 228 (257)
T COG5010 204 VRQNLALVVGLQGDF--REAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhhcCCh--HHHHhhcccc
Confidence 667799999999998 8888875543
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.22 E-value=0.053 Score=59.27 Aligned_cols=138 Identities=13% Similarity=0.037 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch-----H------HHHHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-----R------ILLLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~-----~------~~~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
|...+....|.++..+|.+++|.+-++..+..-++.+.. + +|.+..++ ..+...||+..|.+.+.++
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql--~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL--KSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH--HHHhcCCchhhHHHHHHHH
Confidence 456777888999999999999999999888765544432 1 34444333 4677899999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
+.+.+ .-+.....++.++.+.|+...|+.-+..+-.+. ......+.....++...|+.+.++...+
T Consensus 182 lEi~~--------Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 182 LEIQP--------WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HhcCc--------chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 98622 135666778899999999999998887765432 2334556666777777777777777666
Q ss_pred HHHHH
Q 002424 772 ASLSF 776 (924)
Q Consensus 772 ~AL~l 776 (924)
+||.+
T Consensus 248 ECLKl 252 (504)
T KOG0624|consen 248 ECLKL 252 (504)
T ss_pred HHHcc
Confidence 66644
No 107
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.047 Score=62.11 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=153.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-----HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 630 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-----ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 630 ~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-----~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
+++-+....|+|.+|+.-+..+++.+.+...+- ...+.. +.+.....-|-++.|+.++..+..+.. ..+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~-LlGlys~sv~~~enAe~hf~~a~k~t~-----~~d 401 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM-LLGLYSHSVNCYENAEFHFIEATKLTE-----SID 401 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH-HHhhHhhhcchHHHHHHHHHHHHHhhh-----HHH
Confidence 334444568999999999999998655443321 111221 111344567889999999998877533 334
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCM-CYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~-~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..+-+..++|..+++.|+-+.--+.++..=.. -.....+..++-++...|..-...+++.+|...+.+.|.++..-++-
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~ 481 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN 481 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence 68888899999999998765544444422111 00122345567788888888899999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.+.+..+..|+.+-..+|.. .++...++-+|.+.....|-..+=-....+-..+.+
T Consensus 482 rL~a~~LvLLs~v~lslgn~--~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a 537 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNT--VESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQA 537 (629)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999988777777778888888
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.20 E-value=0.0064 Score=63.33 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC--HHHHHHHHHHHhhhhhccCCCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--LKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+...||.++...|+|++|...++++....|.... ++. .++...+...|+ +.+|..++++++.+ |
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~--~~~---~lA~aL~~~~g~~~~~~A~~~l~~al~~-------d 140 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE--LYA---ALATVLYYQAGQHMTPQTREMIDKALAL-------D 140 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHH---HHHHHHHHhcCCCCcHHHHHHHHHHHHh-------C
Confidence 356788899999999999999999988887664222 111 111012345666 58999999999885 2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
|. ...++.++|..+...|+|++|+..++++++.-.
T Consensus 141 P~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 141 AN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22 457888899999999999999999998887544
No 109
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.002 Score=57.05 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.|+|..|..+++++....+. ++ ....++.+|.++...|+|.+|++.+++ +. .......+...+|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~------~~~~~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LK------LDPSNPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HT------HHHCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC----Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hC------CCCCCHHHHHHHHHHH
Confidence 68999999999999986321 22 566788899999999999999999987 22 1223366777889999
Q ss_pred HhcCChhhhHHHHHHH
Q 002424 758 KKSGNAVLGIPYALAS 773 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~A 773 (924)
...|++++|+..+.+|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999998765
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.18 E-value=0.0056 Score=63.78 Aligned_cols=122 Identities=16% Similarity=0.070 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.++.+++...++.+.+.-|. +...|..- +..++..|++++|...++++..+.+ | ...++...|.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~--~~~~w~~L----g~~~~~~g~~~~A~~a~~~Al~l~P-----~---~~~~~~~lA~aL 117 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ--NSEQWALL----GEYYLWRNDYDNALLAYRQALQLRG-----E---NAELYAALATVL 117 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC--CHHHHHHH----HHHHHHCCCHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHH
Confidence 56678888888877766442 22234321 1678899999999999999998733 2 467788889875
Q ss_pred -HHcCC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 718 -LAANQ--FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 718 -~~~G~--~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...|+ +.+|.+.++++++. ......++.++|.++...|++++|+..+.+++++-..
T Consensus 118 ~~~~g~~~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 118 YYQAGQHMTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHhcCCCCcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 67787 59999999999873 2334679999999999999999999999999988654
No 111
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.22 Score=58.17 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=79.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
-=-|+.+-++|+|++|+.++++....-....+. -+..++........+ +.....+. -++...+
T Consensus 114 ~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~---~~r~nl~a~~a~l~~----------~~~q~v~~----v~e~sye 176 (652)
T KOG2376|consen 114 ELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE---ERRANLLAVAAALQV----------QLLQSVPE----VPEDSYE 176 (652)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH---HHHHHHHHHHHhhhH----------HHHHhccC----CCcchHH
Confidence 334788888899999999888765431111111 111111101111111 11111122 2234788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---cccch-hH-----HHHHHHHHHHHHhcCChhhhHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYK---FNLQV-EN-----ASVLLLLAEIHKKSGNAVLGIPYA 770 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~---~gd~~-~~-----a~al~~la~i~~~~G~~~~Al~~l 770 (924)
..++.+-+++..|+|.+|++.++.++.+|++ .+|.. .. .-+...++.|+...|+-++|...+
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 9999999999999999999999999999986 33333 11 236788999999999999998754
No 112
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.017 Score=60.10 Aligned_cols=154 Identities=19% Similarity=0.180 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc
Q 002424 721 NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF 800 (924)
Q Consensus 721 G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l 800 (924)
+.|++|.+++.++-..++-.........+-+..|..|.+.|.-..|-..+ ..-+..+- -
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Y--------------------veA~~cyk-k 86 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTY--------------------VEAANCYK-K 86 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHH--------------------HHHHHHhh-c
Confidence 47888888888776554433333333445555555555555544444444 33344443 3
Q ss_pred CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 801 GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 801 G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
+++ ++|..+|+.++.+....|.....|.-+..+|..+-.+ ..+.++|+.++++|.+.|..-+.....-.++.+
T Consensus 87 ~~~--~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd-----l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 87 VDP--EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD-----LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred cCh--HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh-----HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 477 8999999999999999999999999999999888874 578899999999999999888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 881 IAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 881 lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
.|..-..+|+... +..+|.++.
T Consensus 160 vA~yaa~leqY~~---Ai~iyeqva 181 (288)
T KOG1586|consen 160 VAQYAAQLEQYSK---AIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHH
Confidence 8877666666554 455555543
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.14 E-value=0.0046 Score=61.21 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=78.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++++|..+++-+..+ ||. .+..++++|.++..+|+|.+|++.+..++.+. ....+....
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~-------Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~------~ddp~~~~~ 108 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY-------DAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK------IDAPQAPWA 108 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------Ccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCchHHHH
Confidence 3556899999999999888775 443 67889999999999999999999999987742 345778889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.|.++...|+...|...+..|+.+|
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.14 E-value=0.0051 Score=57.26 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
...+..|..+...|++++|.+.+++++... .+......++..+|.++.+.|++..|+..+.+++...- ......
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence 467889999999999999999999988632 22233467889999999999999999999998886542 111234
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.++..+|.++..+|.. ++|..++++++...
T Consensus 77 ~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGDK--EKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCCh--HHHHHHHHHHHHHC
Confidence 5678899999999998 99999999988763
No 115
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.10 E-value=0.0045 Score=62.77 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
....+.+.+++|.++...|++++|+.++++++.... +......++..+|.++...|+++.|+..+.+++.+...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--- 104 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--- 104 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 345788899999999999999999999999987532 22334678999999999999999999999999987422
Q ss_pred cHHHHHHHHHHHHHHHHcCCC
Q 002424 783 DLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~ 803 (924)
...+...+|.++..+|..
T Consensus 105 ---~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 ---QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred ---cHHHHHHHHHHHHHcCCh
Confidence 234556678888887774
No 116
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.09 E-value=0.0017 Score=55.95 Aligned_cols=95 Identities=18% Similarity=0.080 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
+++.+|.++...|++++|+..+++++..... ...++..+|.++...|+++.|+..+.+++.+..... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 4677889999999999999999998874321 126788999999999999999999999887653322 5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+...+|.++...|+. ++|..++++++.
T Consensus 70 ~~~~~~~~~~~~~~~--~~a~~~~~~~~~ 96 (100)
T cd00189 70 AYYNLGLAYYKLGKY--EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHc
Confidence 667789999999998 999999888764
No 117
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.054 Score=60.64 Aligned_cols=224 Identities=13% Similarity=0.019 Sum_probs=148.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH--H---HHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--L---LLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~--~---~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+.-.|.++-..++.+.|..++++++..-|...+... . .+. ...-+..++..|+|..|.+++..++.+.+.
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~---- 281 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS---- 281 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----
Confidence 344455566788999999999999988776655431 1 111 111125778999999999999999997443
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
.....+..+.+++.+..+.|+..+|+.-.+.++.+- ..-+.+++..|.+|...+..+.|...+.+|+..-..
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-- 353 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-- 353 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--
Confidence 334467889999999999999999999999988752 233789999999999999999999999999887653
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
...+..|.+....+-.. + +.-+-.+|-+.+.-.+ .....+|..+|-++.-+ ...|.-.+|-.-++++
T Consensus 354 -----~e~r~~l~~A~~aLkkS---k-Rkd~ykilGi~~~as~-~eikkayrk~AL~~Hpd---~~agsq~eaE~kFkev 420 (486)
T KOG0550|consen 354 -----CEIRRTLREAQLALKKS---K-RKDWYKILGISRNASD-DEIKKAYRKLALVHHPD---KNAGSQKEAEAKFKEV 420 (486)
T ss_pred -----cchHHHHHHHHHHHHHh---h-hhhHHHHhhhhhhccc-chhhhHHHHHHHHhCCC---cCcchhHHHHHHHHHH
Confidence 12333344444333321 1 1222334444433222 23334555556545442 2245555666677777
Q ss_pred HHHHHhhcCHHHHHH
Q 002424 862 SEELQVLEDHELAAE 876 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~ 876 (924)
-+.|.-++++....+
T Consensus 421 geAy~il~d~~kr~r 435 (486)
T KOG0550|consen 421 GEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHHHhcCHHHHhh
Confidence 777777777655433
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.04 E-value=0.015 Score=58.90 Aligned_cols=118 Identities=14% Similarity=0.020 Sum_probs=86.8
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 741 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 741 gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
......+.++..+|.++...|++++|+.++.+++.+.... ...+.+...+|.++..+|.. ++|+..+++++....
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p 103 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEH--DKALEYYHQALELNP 103 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc
Confidence 4456678899999999999999999999999999876432 22456788999999999998 999999999987532
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCC-CCCCCChHHHHHHHHHHHHHHHhhc
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPS-FSVSQNPEAVLDPLRQASEELQVLE 869 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~-~~~~g~~~~Al~~L~~A~~~f~~l~ 869 (924)
. ...++..+|.++..... ....++.+.|+..+++|.+.+++.-
T Consensus 104 ~------~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 104 K------QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred c------cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 1 24455566666655211 0114667777777777777776543
No 119
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.071 Score=55.96 Aligned_cols=144 Identities=17% Similarity=0.060 Sum_probs=114.4
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 742 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 742 d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
|.++.+...-.-+..|....+|++|-..+++|..--..+....-.|.+.-..+-+...+... .++.++++.+.....+
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 33444444445556677888889998888888887777777777788877777777777776 9999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHH
Q 002424 822 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 894 (924)
Q Consensus 822 ~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r 894 (924)
+|++...|-++---|++.-. -+|+.|+..+++|+++++.-+...+.-+-+...++++-.+....++
T Consensus 104 ~GspdtAAmaleKAak~len-------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALEN-------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred hCCcchHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 99999988887777766654 6789999999999999988777777778888888888877666553
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.012 Score=58.39 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
..+..+..+..+...|++++|...++-+..+ ..+.++-++.+|.++...|++..|+..+.+|+.+.- .+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--dd--- 102 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DA--- 102 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CC---
Confidence 6788999999999999999999999966542 466788999999999999999999999999988863 23
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
+++..++|.+++.+|+. +.|++.++.++..+
T Consensus 103 -p~~~~~ag~c~L~lG~~--~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 103 -PQAPWAAAECYLACDNV--CYAIKALKAVVRIC 133 (157)
T ss_pred -chHHHHHHHHHHHcCCH--HHHHHHHHHHHHHh
Confidence 36678899999999999 99999999999988
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.02 E-value=0.004 Score=70.95 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=78.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|..++++++.+.+ . ...+++.+|.++...|++++|+..+++++.+.. ....++..
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-------~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~~a~~~ 75 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-------N-NAELYADRAQANIKLGNFTEAVADANKAIELDP------SLAKAYLR 75 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHHHHH
Confidence 577899999999999999998632 2 357889999999999999999999999988522 34667889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++..|+..+.+|+.+.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999876
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.98 E-value=0.0061 Score=58.59 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=51.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...++++..+.+ . ...+...++.++...|++++|...+++++... .....++..
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~p-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~ 90 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYDP-------Y-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD------PDDPRPYFH 90 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhCC-------C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCChHHHHH
Confidence 344556666666666666655311 1 34555666666666666666666666555421 122445556
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++++|+..+.+++.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6666666666666666666665554
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.97 E-value=0.038 Score=60.28 Aligned_cols=173 Identities=15% Similarity=0.054 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC--
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-- 702 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D-- 702 (924)
-.++.+.|.++.+.|+-..|+.-|.+++++-|.. ...+.|.+ .+.+.+|++++|..-+.+.+..-+.-+..-
T Consensus 72 Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-----~~ARiQRg-~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 72 YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-----MAARIQRG-VVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-----HHHHHHhc-hhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 4678899999999999999999999888764432 22223322 577899999999999999988532111000
Q ss_pred -----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 703 -----MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 703 -----~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+..+...+.....-+...||+..|++++..++++ ..|-+.....+|.+|...|++-.|+..+..+-.+.
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 0001122223334456779999999999999885 46778888889999999999999999998888777
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
..+. .....+..++..+|+. +.++..+++||-
T Consensus 220 ~DnT------e~~ykis~L~Y~vgd~--~~sL~~iRECLK 251 (504)
T KOG0624|consen 220 QDNT------EGHYKISQLLYTVGDA--ENSLKEIRECLK 251 (504)
T ss_pred ccch------HHHHHHHHHHHhhhhH--HHHHHHHHHHHc
Confidence 5443 3445566666667766 666666666553
No 124
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.97 E-value=0.092 Score=58.71 Aligned_cols=210 Identities=17% Similarity=0.078 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC-
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT- 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~- 699 (924)
.++...+....+..+..+|+|+.|..-+.++.+.-|. ....+++.. ..+++.|+|.+...++..+..- ..++
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr----~~~vlrLa~--r~y~~~g~~~~ll~~l~~L~ka-~~l~~ 221 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR----HPEVLRLAL--RAYIRLGAWQALLAILPKLRKA-GLLSD 221 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC----ChHHHHHHH--HHHHHhccHHHHHHHHHHHHHc-cCCCh
Confidence 3455666667777777777777777777766654332 112222211 5666777777777777766551 1111
Q ss_pred --------------------CCCcch--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh
Q 002424 700 --------------------GVDMDL--------------KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE 745 (924)
Q Consensus 700 --------------------~~D~~~--------------~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~ 745 (924)
+.|.++ ..+.....+.-+...|++++|.+.+.+++.. ..|..
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~---~~D~~- 297 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR---QWDPR- 297 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh---ccChh-
Confidence 111111 0112223344445555555555555555541 11111
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
...+ .+ ..+.|++. +....+-.....++++. ..+..||.++..-+. +.+|...++.+++.-.+
T Consensus 298 -L~~~--~~--~l~~~d~~---~l~k~~e~~l~~h~~~p---~L~~tLG~L~~k~~~--w~kA~~~leaAl~~~~s---- 360 (400)
T COG3071 298 -LCRL--IP--RLRPGDPE---PLIKAAEKWLKQHPEDP---LLLSTLGRLALKNKL--WGKASEALEAALKLRPS---- 360 (400)
T ss_pred -HHHH--Hh--hcCCCCch---HHHHHHHHHHHhCCCCh---hHHHHHHHHHHHhhH--HHHHHHHHHHHHhcCCC----
Confidence 1100 00 01222221 11122222224555554 556677777755555 49999999988876544
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 826 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 826 ~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
+..+..+|+++-+ .|++.+|-+..++|+..+..
T Consensus 361 ---~~~~~~la~~~~~------~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 361 ---ASDYAELADALDQ------LGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred ---hhhHHHHHHHHHH------cCChHHHHHHHHHHHHHhcC
Confidence 4455566667777 78888888888888876654
No 125
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.90 E-value=0.046 Score=55.12 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=99.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++.+|..+++++++- +-..| ...++.++...+..|++.+|...++.+.+. ..-....+-++.
T Consensus 97 ~al~elGr~~EA~~hy~qalsG---~fA~d----~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~----~pa~r~pd~~Ll 165 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSG---IFAHD----AAMLLGLAQAQFAIQEFAAAQQTLEDLMEY----NPAFRSPDGHLL 165 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhcc---ccCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHhhc----CCccCCCCchHH
Confidence 4667899999999999998871 21123 566888999999999999999999988764 222334557888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
.|.++...|.+..|.+.+..+++..-. ..+++.-++.+..+|+. .+|..-+.++...+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg-------~~ar~~Y~e~La~qgr~--~ea~aq~~~v~d~~~r 225 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPG-------PQARIYYAEMLAKQGRL--REANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCC-------HHHHHHHHHHHHHhcch--hHHHHHHHHHHHHHHh
Confidence 999999999999999999888776532 24566678888999988 8888877776655543
No 126
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.0034 Score=53.01 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-ChhhhHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSF 776 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G-~~~~Al~~l~~AL~l 776 (924)
+.++..+|..+...|+|++|+..+++++... .....++..+|.++...| ++.+|+..+.+|+.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 5788999999999999999999999999852 335779999999999999 799999999999876
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.88 E-value=0.034 Score=63.61 Aligned_cols=122 Identities=19% Similarity=0.095 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.+..-.|......|.+++|+..|+.....+| ++. .+-+.- +.++..|+..+|.+.+++++.+ ||.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P---~N~~~~~~~~----~i~~~~nk~~~A~e~~~kal~l-------~P~ 372 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQP---DNPYYLELAG----DILLEANKAKEAIERLKKALAL-------DPN 372 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCC---CCHHHHHHHH----HHHHHcCChHHHHHHHHHHHhc-------CCC
Confidence 4456666777788999999999998776665 333 232221 7889999999999999999986 444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP 768 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~ 768 (924)
......+.|..++..|++.+|+..++..+.. .......+..+|+.|...|+..+|..
T Consensus 373 -~~~l~~~~a~all~~g~~~eai~~L~~~~~~------~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 373 -SPLLQLNLAQALLKGGKPQEAIRILNRYLFN------DPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred -ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCCchHHHHHHHHHHHhCchHHHHH
Confidence 3678899999999999999999999887641 11223344455555555555544443
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.012 Score=68.26 Aligned_cols=190 Identities=15% Similarity=0.071 Sum_probs=136.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+..+|.-+++.+..- ||. .++++..+|.++...++-..|+..+.+++++ ......+|+.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq-------dP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~NleaLma 358 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ-------DPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLEALMA 358 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh-------ChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHHHHHH
Confidence 4667899999999988887662 554 7899999999999999999999988888763 4556778888
Q ss_pred HHHHHHhcCChhhhHHHHHH--------------------------------------HHHHHHHhCCcHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALA--------------------------------------SLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~--------------------------------------AL~la~~~g~~~~~A~al~~La 794 (924)
||..|...|.-..|+..+.. =|+.+++.+. ..-+.+...||
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LG 437 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLG 437 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhH
Confidence 88888877777777665532 2233333321 12233444455
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHH
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 874 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~ 874 (924)
-++...| +|++|.++++.+|-.- ..-+..++-||-+... ..+.++|+..+++|+++. ..=
T Consensus 438 VLy~ls~--efdraiDcf~~AL~v~------Pnd~~lWNRLGAtLAN------~~~s~EAIsAY~rALqLq------P~y 497 (579)
T KOG1125|consen 438 VLYNLSG--EFDRAVDCFEAALQVK------PNDYLLWNRLGATLAN------GNRSEEAISAYNRALQLQ------PGY 497 (579)
T ss_pred HHHhcch--HHHHHHHHHHHHHhcC------CchHHHHHHhhHHhcC------CcccHHHHHHHHHHHhcC------CCe
Confidence 5554444 4699999999987542 2345677888877666 677889999999999864 333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Q 002424 875 AEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 875 ~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
-++.|-+|..+-.+|...++-++
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHH
Confidence 46788899999999998886664
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.3 Score=51.78 Aligned_cols=193 Identities=20% Similarity=0.096 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHhhcc-CchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 640 GYKEAFSALKIAEEKFLSV-SKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 640 ~y~eA~~~L~~a~~~f~~~-~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
+.++-.++..+.+.-...- .-..+|.+-.++. ..++..|+.+.|..++.++..-|+. ...+....|..+-
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~-IAAld~~~~~lAq~C~~~L~~~fp~--------S~RV~~lkam~lE 97 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVF-IAALDTGRDDLAQKCINQLRDRFPG--------SKRVGKLKAMLLE 97 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHhCCC--------ChhHHHHHHHHHH
Confidence 3455555555544432221 1234688776654 7889999999999999999886542 4466777888999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
+.|++.+|++.++..+. .|+... -....+--+....|..-.|+..+..=++..- .-.+|...|++++.
T Consensus 98 a~~~~~~A~e~y~~lL~-----ddpt~~-v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLE-----DDPTDT-VIRKRKLAILKAQGKNLEAIKELNEYLDKFM------NDQEAWHELAEIYL 165 (289)
T ss_pred HhhchhhHHHHHHHHhc-----cCcchh-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 99999999999999987 343222 2223445556688999899888877777652 11377888999999
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHH--HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELR--ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~--A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.+|+. ++|.-++|+++-+ -=+..++.+ |..+++.| + .+....|..++.+|+++--
T Consensus 166 ~~~~f--~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~g-----g-----~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 166 SEGDF--EKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQG-----G-----AENLELARKYYERALKLNP 222 (289)
T ss_pred hHhHH--HHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHh-----h-----HHHHHHHHHHHHHHHHhCh
Confidence 99986 9999999998633 112222222 33344444 2 5678889999999998765
No 130
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=1.8 Score=52.54 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHh-----hHHHHHHH--cCCHHHHHHHHHHHhhhhhcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-----LLHERSLH--RGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~-----l~~~~al~--~G~~~~A~~~l~~ll~l~~~~ 698 (924)
.++..||+.|--.|++.+|...+.+|... .+.+++.+++ ++ ..++. ..+...|..+++.+-..
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqaf-----snAIRlcKEnd~~d~L~-nlal~s~~~d~v~aArYyEe~g~~---- 1037 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAF-----SNAIRLCKENDMKDRLA-NLALMSGGSDLVSAARYYEELGGY---- 1037 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHhcCHHHHHH-HHHhhcCchhHHHHHHHHHHcchh----
Confidence 45677888888888888888877766532 1122211111 11 11121 22334444444433211
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH---
Q 002424 699 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHS-----LFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA--- 770 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~-----aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l--- 770 (924)
--.-..++.+.|-+..|+++.=+ +|++.-+.-|...-...+..-+..+....+|++|..++
T Consensus 1038 -----------~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1038 -----------AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred -----------hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 01223455667777777776532 22222222223333556677788888888999997654
Q ss_pred ---HHHHHHHHHhCCcHH
Q 002424 771 ---LASLSFCQLLNLDLL 785 (924)
Q Consensus 771 ---~~AL~la~~~g~~~~ 785 (924)
.+|+.+|..-|.+.-
T Consensus 1107 r~~~~AlqlC~~~nv~vt 1124 (1416)
T KOG3617|consen 1107 REFSGALQLCKNRNVRVT 1124 (1416)
T ss_pred HHHHHHHHHHhcCCCchh
Confidence 578888876666543
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.054 Score=63.02 Aligned_cols=228 Identities=13% Similarity=-0.038 Sum_probs=146.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-|..+...|+..+|.-.|+.|...=|.+- ..|.. + +..+...++-..|...+++++.+ ||. -.+++
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~-L---G~~qaENE~E~~ai~AL~rcl~L-------dP~-NleaL 356 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHA--EAWQK-L---GITQAENENEQNAISALRRCLEL-------DPT-NLEAL 356 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHH--HHHHH-h---hhHhhhccchHHHHHHHHHHHhc-------CCc-cHHHH
Confidence 34456667777777777776665433111 12221 1 14455566666777777777765 332 45677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------------------HHcccchhHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMC--------------------------------------YKFNLQVENASVLLL 752 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~--------------------------------------~~~gd~~~~a~al~~ 752 (924)
..+|..+.-.|.-.+|++++..-+..- +..+. ..-.++...
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~ 435 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSG 435 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhh
Confidence 777777777777777777776554321 11110 112447889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
||.+|.-.|++++|+.++..||..- .--.....+||.++.--.+. ++|+.-|++||.+- .-+.| +.
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~------Pnd~~lWNRLGAtLAN~~~s--~EAIsAY~rALqLq----P~yVR--~R 501 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVK------PNDYLLWNRLGATLANGNRS--EEAISAYNRALQLQ----PGYVR--VR 501 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcC------CchHHHHHHhhHHhcCCccc--HHHHHHHHHHHhcC----CCeee--ee
Confidence 9999999999999999999998763 11224466788877655556 99999999997653 32333 55
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHH----HHHHHHHHHHHhcCCHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAA----EAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~----~vl~~lA~l~~~lGd~~~ 893 (924)
+.||-+++. .|.+.+|+.+|=.|+.+-++-......+ .+...|-.+.-..+..+.
T Consensus 502 yNlgIS~mN------lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 502 YNLGISCMN------LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hhhhhhhhh------hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 688888888 8999999999999999888733333332 333333355555565553
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.83 E-value=0.018 Score=65.55 Aligned_cols=95 Identities=11% Similarity=0.044 Sum_probs=76.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+...|......|+|++|+..+++|.+..|... ..+. .++ ..++..|++.+|...+++++.+.+ . ..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~---~~a-~~~~~~g~~~eAl~~~~~Al~l~P-------~-~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYA---DRA-QANIKLGNFTEAVADANKAIELDP-------S-LA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH---HHH-HHHHHcCCHHHHHHHHHHHHHhCc-------C-CH
Confidence 45667888899999999999999998766321 2221 111 577889999999999999998733 2 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
.+++++|.++..+|+|++|+..+++++.+
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 78999999999999999999999999885
No 133
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.0093 Score=56.54 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=80.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
..-.-|++++|.+.+.+++.+.+. .+-++++.+..+.-+|+.++|++-++++++++. +..+....+...+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trtacqa~vQR 121 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--------RASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTACQAFVQR 121 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHHHHHHHHH
Confidence 445789999999999999998652 678899999999999999999999999999754 3345567789999
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la 777 (924)
|.+|...|+-+.|...+..|..+-
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhC
Confidence 999999999999999998876654
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.80 E-value=0.014 Score=56.13 Aligned_cols=98 Identities=17% Similarity=0.091 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
..+...+|..+...|+|++|...++.+.+..+.. ...+. +. ..+...|++++|...++++..+.+ +
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la-----~~~~~~~~~~~A~~~~~~~~~~~p-----~- 83 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLA-----ACCQMLKEYEEAIDAYALAAALDP-----D- 83 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCC-----C-
Confidence 4567889999999999999999999988776532 12221 22 566788999999999999887522 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
.....+.+|.++...|++++|+..++.++...
T Consensus 84 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 84 --DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999998853
No 135
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.77 E-value=0.0056 Score=54.15 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 002424 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 799 (924)
Q Consensus 720 ~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~ 799 (924)
.|+|+.|+..++++++.... + . ....+..+|.++.+.|++.+|+..+.+ +.... . ...+...+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~----~--~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--N-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP----S--NPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--T-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH----C--HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC--C-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC----C--CHHHHHHHHHHHHH
Confidence 68999999999999885321 1 1 666788899999999999999999987 32222 1 13455567999999
Q ss_pred cCCChHHHHHHHHHHH
Q 002424 800 FGPNHAKMASNLIQQA 815 (924)
Q Consensus 800 lG~~~~~~Al~lLe~a 815 (924)
+|+. ++|+.+++++
T Consensus 71 l~~y--~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY--EEAIKALEKA 84 (84)
T ss_dssp TT-H--HHHHHHHHHH
T ss_pred hCCH--HHHHHHHhcC
Confidence 9998 9999999874
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.73 E-value=0.087 Score=64.57 Aligned_cols=243 Identities=15% Similarity=0.037 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHH-HHhh-cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLI-YATC-FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL 664 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~-~~~~-~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~ 664 (924)
...+...-|..+|+..=....+.- +... .-| ...+.+++.||..+..--+-..|...+..|.++=+ ++...|
T Consensus 456 ~~~e~~~~w~a~~~~rK~~~~al~ali~alrld----~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaa 529 (1238)
T KOG1127|consen 456 LECENSEFWVALGCMRKNSALALHALIRALRLD----VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAA 529 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhH
Confidence 344555667777665544333321 1111 112 23578889999888776677777777776654421 111122
Q ss_pred H-HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 665 L-LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 665 ~-l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
. +. ..+....+|++|..++......++. ...-..+..+|-++...+++..|+..++.+++..
T Consensus 530 aa~a-----dtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d------ 592 (1238)
T KOG1127|consen 530 AASA-----DTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD------ 592 (1238)
T ss_pred HHHH-----HHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC------
Confidence 2 22 6777899999999997666553221 1234556679999999999999999999998732
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
.--.+++..+|++|.++|++..|+-.+.+|..+ +.....++.-.|-+.+.+|.. .+|++.+..++-..-
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkY--keald~l~~ii~~~s--- 661 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKY--KEALDALGLIIYAFS--- 661 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH---
Confidence 223678999999999999999999888777554 233445667788889999998 999999988875542
Q ss_pred CHHHHHHHHHHHHHhhhcCCCC-CCCCChHHHHHHHHHHHHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSF-SVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~-~~~g~~~~Al~~L~~A~~~f~ 866 (924)
..-.+...||.|++.++.. -..|-.-+|.++++++.+.|.
T Consensus 662 ---~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 662 ---LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred ---HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3334555666666653221 114556678888888887775
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.71 E-value=0.013 Score=50.38 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++.++|..+...|++++|...++++....+... ..+. .++ ..+...|++++|...+.++....+ .+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~~~-~~~~~~~~~~~a~~~~~~~~~~~~----~~---- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYY---NLA-AAYYKLGKYEEALEDYEKALELDP----DN---- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHH---HHH-HHHHHHHHHHHHHHHHHHHHhCCC----cc----
Confidence 467889999999999999999999887755322 1111 111 566778999999999999887532 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
..+....+.++...|++++|.+.+..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 26788899999999999999999988765
No 138
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.64 E-value=2.4 Score=50.67 Aligned_cols=155 Identities=20% Similarity=0.118 Sum_probs=114.0
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+......++.-||+++-..|+|++|+..++.|.+.=|...+ .-+++ ...+-+.|++.+|.+.++.+..+ +
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e--ly~~K----arilKh~G~~~~Aa~~~~~Ar~L----D 258 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE--LYMTK----ARILKHAGDLKEAAEAMDEAREL----D 258 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH--HHHHH----HHHHHHCCCHHHHHHHHHHHHhC----C
Confidence 34456788899999999999999999999999987654333 12222 15667999999999999998775 3
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh---H---HHHHHHHHHHHHhcCChhhhHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE---N---ASVLLLLAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~---~---a~al~~la~i~~~~G~~~~Al~~l~~A 773 (924)
..|+ ..-..-+.++++.|+.++|.+.+..--. ...++.. . ...+..-|..|.+.|++..|+-.+...
T Consensus 259 ~~DR----yiNsK~aKy~LRa~~~e~A~~~~~~Ftr---~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 259 LADR----YINSKCAKYLLRAGRIEEAEKTASLFTR---EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred hhhH----HHHHHHHHHHHHCCCHHHHHHHHHhhcC---CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3353 3355678888999999999998863321 1112211 1 446788999999999999999999999
Q ss_pred HHHHHHhCCcHHHHHHHH
Q 002424 774 LSFCQLLNLDLLKASATL 791 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~ 791 (924)
..+......+-.--+..+
T Consensus 332 ~k~f~~~~~DQfDFH~Yc 349 (517)
T PF12569_consen 332 LKHFDDFEEDQFDFHSYC 349 (517)
T ss_pred HHHHHHHhcccccHHHHH
Confidence 999887776655444443
No 139
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.058 Score=62.23 Aligned_cols=158 Identities=15% Similarity=0.069 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.++++.++|..+...|+|+.|...++++++.++.-.. .-......++.....+..-+ +|
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~--------------ls~lk~~Ek~~k~~e~~a~~-------~p 355 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL--------------LSKLKEAEKALKEAERKAYI-------NP 355 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH--------------HHHHHHHHHHHHHHHHHHhh-------Ch
Confidence 4566667777888899999999999998877664111 11122223333333333322 23
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
+. ++-....|.-....|+|..|+..+++++.. ...-++...++|-+|+++|.+..|+..+..++++ .-.
T Consensus 356 e~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~ 424 (539)
T KOG0548|consen 356 EK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL----DPN 424 (539)
T ss_pred hH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----Cch
Confidence 32 222333455566666666666666665541 1333555566666666666666666665555555 112
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
... +..+=|.++..+-+. +.|.+.+++++.
T Consensus 425 ~~k--gy~RKg~al~~mk~y--dkAleay~eale 454 (539)
T KOG0548|consen 425 FIK--AYLRKGAALRAMKEY--DKALEAYQEALE 454 (539)
T ss_pred HHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 222 223334444444444 566655555543
No 140
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.63 E-value=0.32 Score=57.41 Aligned_cols=228 Identities=16% Similarity=0.019 Sum_probs=153.2
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
....+|+.|..+|..|... .+..++|+=.. ...+.+|+.++|..++++.+..|+ | -...++.+|.
T Consensus 629 ~en~e~eraR~llakar~~---sgTeRv~mKs~----~~er~ld~~eeA~rllEe~lk~fp-----~---f~Kl~lmlGQ 693 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI---SGTERVWMKSA----NLERYLDNVEEALRLLEEALKSFP-----D---FHKLWLMLGQ 693 (913)
T ss_pred hccccHHHHHHHHHHHhcc---CCcchhhHHHh----HHHHHhhhHHHHHHHHHHHHHhCC-----c---hHHHHHHHhH
Confidence 4566799999988877753 44566666443 345678999999999999999776 4 5577888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
++-.+++.+.|.+.+.+-+..|- .-+-.++.++.+--+.|++.+|...+.++.-.-=+ +..++. ..-.
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwl-----e~Ir 761 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCP------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWL-----ESIR 761 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCC------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHH-----HHHH
Confidence 99999999888888877665443 23567888888888999999999888777432211 111111 1222
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH------------------------HHHHhhhcCCCCCCCCCh
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI------------------------AEAKCLLSDPSFSVSQNP 851 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~------------------------~LAr~~la~~~~~~~g~~ 851 (924)
+-+..|.. ++|..++-++|.-+-..|-.+.++.-+. ..|+.... ....
T Consensus 762 ~ElR~gn~--~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~------e~k~ 833 (913)
T KOG0495|consen 762 MELRAGNK--EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS------EKKI 833 (913)
T ss_pred HHHHcCCH--HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH------HHHH
Confidence 33567877 8888888888888777777777665432 22222222 3446
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 852 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 852 ~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
++|++++.+|+..-...||. ....=..+...|..+.+.+....|.+.
T Consensus 834 ~kar~Wf~Ravk~d~d~GD~------wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPDNGDA------WAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHccCCccchH------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 67888888887765555543 333444556667777777666666554
No 141
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.62 E-value=0.045 Score=52.05 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.+-+.+..+...|+.+.|++.+.+++..|-+ ++.+++++|+.+.-.|+++.|+..+.+|++++-.- ..-...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3456778889999999999999999997643 37899999999999999999999999999998543 344556
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRAR 830 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~ 830 (924)
+.+.-|.++..+|.. +.|+.-++.+ -+.|+...+-+
T Consensus 117 a~vQRg~lyRl~g~d--d~AR~DFe~A----A~LGS~FAr~Q 152 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGND--DAARADFEAA----AQLGSKFAREQ 152 (175)
T ss_pred HHHHHHHHHHHhCch--HHHHHhHHHH----HHhCCHHHHHH
Confidence 666778888899999 9999988887 45677665554
No 142
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.061 Score=60.13 Aligned_cols=192 Identities=18% Similarity=0.142 Sum_probs=132.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 632 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 632 a~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
+.+++...+|..|+.+-+.+...=+. .....+++ +...+..|+..+|.-+++.+..+++ ...++..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilK----G~lL~~~~R~~~A~IaFR~Aq~Lap--------~rL~~Y~ 372 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR--NHEALILK----GRLLIALERHTQAVIAFRTAQMLAP--------YRLEIYR 372 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhc----cHHHHhccchHHHHHHHHHHHhcch--------hhHHHHH
Confidence 44667777888888777655533111 01112222 2456788899999988888877643 1567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH-HHHHhcCCh-hhhHHHHHHHHHHHHHhCCcHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA-EIHKKSGNA-VLGIPYALASLSFCQLLNLDLLKASA 789 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la-~i~~~~G~~-~~Al~~l~~AL~la~~~g~~~~~A~a 789 (924)
.+.+.+++.|++.||+-+.+++...... .+++|.+.| .|+.-.... ++|-..+..+|.+ .....-|
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~------sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~------~P~Y~~A 440 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQN------SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI------NPIYTPA 440 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhc------chhhhhhhcceeeccCchhHHHHHHHHHhhhcc------CCccHHH
Confidence 8888889999999999888888765432 377777775 555433222 5777777766654 2334456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 790 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 790 l~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
.+.+|+++..-|.. ..++.+|+..|...- | ...+..||....| ...+.+|.+++..|+.+
T Consensus 441 V~~~AEL~~~Eg~~--~D~i~LLe~~L~~~~---D----~~LH~~Lgd~~~A------~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPT--KDIIKLLEKHLIIFP---D----VNLHNHLGDIMRA------QNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCcc--chHHHHHHHHHhhcc---c----cHHHHHHHHHHHH------hhhHHHHHHHHHHHHhc
Confidence 67799999999998 999999999986632 3 2356678888888 67788888888888753
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.013 Score=63.28 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.++-+-..|.=++..++|.+|+..+++++.+ ..-.+....++|.+|.+.|+++.|+..+..|+.+= .-
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------p~ 147 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID------PH 147 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------hH
Confidence 5666777888899999999999999999874 23346678899999999999999999999888763 33
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..++..+||.++..+|+. ++|.+.+..+|.+
T Consensus 148 yskay~RLG~A~~~~gk~--~~A~~aykKaLel 178 (304)
T KOG0553|consen 148 YSKAYGRLGLAYLALGKY--EEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHHHccCcH--HHHHHHHHhhhcc
Confidence 457778899999999998 9999999988776
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.59 E-value=0.011 Score=49.38 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+.+|..++..|+|++|++.+++++. .......++..+|.++...|++..|+..+.+++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3578899999999999999999886 23558899999999999999999999999998865
No 145
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.57 E-value=0.17 Score=60.68 Aligned_cols=175 Identities=12% Similarity=0.061 Sum_probs=112.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 632 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 632 a~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
|.+....|=.+||..++++.+. +-.+. ..+-..|.|.+|.++.+.- |+-.--...+
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR---------~DLlN-----KlyQs~g~w~eA~eiAE~~----------DRiHLr~Tyy 862 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR---------YDLLN-----KLYQSQGMWSEAFEIAETK----------DRIHLRNTYY 862 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---------HHHHH-----HHHHhcccHHHHHHHHhhc----------cceehhhhHH
Confidence 3344455666777776665442 11122 5666899999998765532 4444557789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHHHHHcccchhHH----------HHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSL----FCMCYKFNLQVENA----------SVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~a----L~~~~~~gd~~~~a----------~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.+..+-++||.+.|++.++.+ .+..+-..+-...+ ..+.--|+-.-..|+.+.|+..+..|-+..
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 9999999999999999999865 22222222111111 134445666677888888888876554443
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
.+..+++-+|.. ++|-++ +.+.||+ | |.+.|||.|-. .|+..+|+.+
T Consensus 943 --------------s~VrI~C~qGk~--~kAa~i-------A~esgd~---A-AcYhlaR~YEn------~g~v~~Av~F 989 (1416)
T KOG3617|consen 943 --------------SMVRIKCIQGKT--DKAARI-------AEESGDK---A-ACYHLARMYEN------DGDVVKAVKF 989 (1416)
T ss_pred --------------hheeeEeeccCc--hHHHHH-------HHhcccH---H-HHHHHHHHhhh------hHHHHHHHHH
Confidence 355566677877 666554 3456663 2 56778888888 7888888888
Q ss_pred HHHHHH
Q 002424 858 LRQASE 863 (924)
Q Consensus 858 L~~A~~ 863 (924)
+.+|.+
T Consensus 990 fTrAqa 995 (1416)
T KOG3617|consen 990 FTRAQA 995 (1416)
T ss_pred HHHHHH
Confidence 877654
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.56 E-value=2.9 Score=50.68 Aligned_cols=106 Identities=22% Similarity=0.112 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH-HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI-LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
.+.+.--||.++..+++|.+|+.+.+.+.+-|+ ++.. ...+. ...+.-||-.+|...+.+.++++...-+..
T Consensus 512 ~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~----~i~~~~~~~e~~l~t~~~~L~~we~~~~~q 584 (799)
T KOG4162|consen 512 SAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKI----HIELTFNDREEALDTCIHKLALWEAEYGVQ 584 (799)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhh----hhhhhcccHHHHHHHHHHHHHHHHhhhhHh
Confidence 357778889999999999999999999888776 3221 11111 233457888888888888888776221110
Q ss_pred -cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 -MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 -~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
...+.......+.+.+..++..+|......+...
T Consensus 585 ~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 585 QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 0002233344455555555555565555555443
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.46 E-value=0.26 Score=61.76 Aligned_cols=216 Identities=13% Similarity=-0.019 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC--
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG-- 700 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~-- 700 (924)
+...+.-.|+..+-..|++++|.++++.+.+.+|....-. .. .+ ..++..+++..|... .++.+++.-..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~y---y~--~G-~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISAL---YI--SG-ILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehH---HH--HH-HHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 4457788889898899999999999998888877543311 00 11 244455555555433 33333221100
Q ss_pred ---------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 701 ---------VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 701 ---------~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.|-...-.+++.+|.++-.+|++++|...++++++. + ...+.++..+|..+... +.++|+.++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-----D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-----D-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----C-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 011113368999999999999999999999999984 2 77799999999999999 9999999999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 851 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~ 851 (924)
+|+..--....- ..+=++|..+.... ..=.+.+-+++..++..-....-+..+.-|=.+|.. .+++
T Consensus 174 KAV~~~i~~kq~-------~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~------~~~~ 239 (906)
T PRK14720 174 KAIYRFIKKKQY-------VGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA------LEDW 239 (906)
T ss_pred HHHHHHHhhhcc-------hHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh------hhhh
Confidence 998885433211 11222333322220 122334445555555543333344445556688888 7899
Q ss_pred HHHHHHHHHHHHHHHh
Q 002424 852 EAVLDPLRQASEELQV 867 (924)
Q Consensus 852 ~~Al~~L~~A~~~f~~ 867 (924)
.+++..|+.+++.-.+
T Consensus 240 ~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 240 DEVIYILKKILEHDNK 255 (906)
T ss_pred hHHHHHHHHHHhcCCc
Confidence 9999999999987654
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.21 Score=53.81 Aligned_cols=167 Identities=13% Similarity=-0.002 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
....+.-||+++-...+|.+|...+++.-..+|....-+.... .-....|.+++|...+..+.. .+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A------QSLY~A~i~ADALrV~~~~~D--------~~ 108 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA------QSLYKACIYADALRVAFLLLD--------NP 108 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH------HHHHHhcccHHHHHHHHHhcC--------CH
Confidence 4556677788888888888888888877777775443221111 234467777777776665533 24
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
...-+++-..+-+....||+..+..++++.- ..+.+.+++..|.+..+.|+++.|+.-+..|+.. .|..
T Consensus 109 ~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--------~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyq 177 (459)
T KOG4340|consen 109 ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--------SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQ 177 (459)
T ss_pred HHHHHHHHHHHHHhcccccCcchHHHHHhcc--------CCCccchhccchheeeccccHHHHHHHHHHHHhh---cCCC
Confidence 5566777777777777788777777766531 1355788888999999999999999988888765 3566
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.+.|. ++|..+.+-|+. ..|+++.-+++..-.
T Consensus 178 pllAY---niALaHy~~~qy--asALk~iSEIieRG~ 209 (459)
T KOG4340|consen 178 PLLAY---NLALAHYSSRQY--ASALKHISEIIERGI 209 (459)
T ss_pred chhHH---HHHHHHHhhhhH--HHHHHHHHHHHHhhh
Confidence 66554 366667778887 889998888876643
No 149
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.36 E-value=1.1 Score=57.27 Aligned_cols=236 Identities=15% Similarity=0.102 Sum_probs=174.3
Q ss_pred HHHHccCHHHHHHHHHHHHHH--hhccC-chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEK--FLSVS-KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~--f~~~~-~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
.+...++.+.|.++.++|+.. |++.. .-.+|+.-+++ ...-|.-+...+.++++-..+ | ...+.
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl----En~yG~eesl~kVFeRAcqyc------d---~~~V~ 1533 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNL----ENAYGTEESLKKVFERACQYC------D---AYTVH 1533 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH----HHhhCcHHHHHHHHHHHHHhc------c---hHHHH
Confidence 445678999999999999984 44322 23467766543 245567788888899987753 4 55777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
..+..+|...+.+++|-+++++++.-++ ....++...|...++..+.++|.+.+.+||.-.-+ ...-...
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~I 1603 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFI 1603 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHH
Confidence 8888999999999999999999998543 34678899999999999999999999999988743 1223444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
--.|.+....|++ ++++.+++..+...-. +--.++.+.++-+. .|+...+...++++. .+..
T Consensus 1604 skfAqLEFk~GDa--eRGRtlfEgll~ayPK------RtDlW~VYid~eik------~~~~~~vR~lfeRvi----~l~l 1665 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDA--ERGRTLFEGLLSAYPK------RTDLWSVYIDMEIK------HGDIKYVRDLFERVI----ELKL 1665 (1710)
T ss_pred HHHHHHHhhcCCc--hhhHHHHHHHHhhCcc------chhHHHHHHHHHHc------cCCHHHHHHHHHHHH----hcCC
Confidence 5578888889999 9999999998765422 22355666677777 677788888888775 4667
Q ss_pred HHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhhhc
Q 002424 871 HELAAEAFYLIAIVFDKL-GRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 871 ~~~~~~vl~~lA~l~~~l-Gd~~~r~~aa~~f~~l~~~~~~ 910 (924)
+.+.+.=++++=.-|... ||-...+..-++..++.....+
T Consensus 1666 ~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~~s 1706 (1710)
T KOG1070|consen 1666 SIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESIKS 1706 (1710)
T ss_pred ChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHhhh
Confidence 777777788777777654 7766666665666666655555
No 150
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.13 Score=59.54 Aligned_cols=235 Identities=13% Similarity=0.013 Sum_probs=144.7
Q ss_pred HHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhcc-CchHHHHHH
Q 002424 589 LLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SKSRILLLK 667 (924)
Q Consensus 589 ~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~-~~~~~~~l~ 667 (924)
...+.--..+|........-.+...+|...-..+....-+.+.+-++...|.|.+.....+.+.+.-++. .+.....-+
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 3344455556665555443333344443322223334556778888888888888888887766653321 121111111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 668 LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 668 l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
+...+..+..+|++..|...+.+++.-.+ . ..++-.....++++...+..... ++ ..+
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~R-----t-----------~~~ls~lk~~Ek~~k~~e~~a~~-----~p-e~A 358 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHR-----T-----------PDLLSKLKEAEKALKEAERKAYI-----NP-EKA 358 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhc-----C-----------HHHHHHHHHHHHHHHHHHHHHhh-----Ch-hHH
Confidence 22222455567889999988888766322 1 33444455555555555443321 11 114
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
.-....|.-+.+.|+|..|+.++.+|+... .--+....+.|.+|..+|.. ..|+.-.+.++.. ...+.
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~------P~Da~lYsNRAac~~kL~~~--~~aL~Da~~~ieL----~p~~~ 426 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRD------PEDARLYSNRAACYLKLGEY--PEALKDAKKCIEL----DPNFI 426 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CchhHHHHHHHHHHHHHhhH--HHHHHHHHHHHhc----CchHH
Confidence 455667999999999999999999977664 23346677788889999987 9999988887766 44444
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+|.. -=|.|+.+ ..++.+|++.+++|++.-
T Consensus 427 kgy~--RKg~al~~------mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 427 KAYL--RKGAALRA------MKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHH--HHHHHHHH------HHHHHHHHHHHHHHHhcC
Confidence 4444 44666776 677888888888887643
No 151
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.30 E-value=0.28 Score=58.42 Aligned_cols=231 Identities=17% Similarity=0.062 Sum_probs=124.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.-.+.++...|+|++|+++|+....... |...+.-. . ...++..|++++|...+..++.. .|+.. .
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~---Dk~~~~E~--r-A~ll~kLg~~~eA~~~y~~Li~r-------NPdn~-~ 73 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQIL---DKLAVLEK--R-AELLLKLGRKEEAEKIYRELIDR-------NPDNY-D 73 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCC---CHHHHHHH--H-HHHHHHcCCHHHHHHHHHHHHHH-------CCCcH-H
Confidence 3345567789999999999986554321 22112111 1 16778999999999999999985 22222 2
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhh-HHHHHHHHHHHHHhCC
Q 002424 709 ASLRHARTLLAAN-----QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPYALASLSFCQLLNL 782 (924)
Q Consensus 709 a~~~~a~ll~~~G-----~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~A-l~~l~~AL~la~~~g~ 782 (924)
....+..++.... +.+.-.+.+++.... .....+-..+...+..-.++... -.++... -.-|-
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~-------yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~----l~Kgv 142 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEK-------YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ----LRKGV 142 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHh-------CccccchhHhhcccCCHHHHHHHHHHHHHHH----HhcCC
Confidence 2333333331121 233334444433321 11111111111111111112111 2222222 23344
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH----hhC-----------CHHHHHHHHHHHHHhhhcCCCCCC
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL----GHG-----------GLELRARAFIAEAKCLLSDPSFSV 847 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl----~~g-----------d~~~~A~a~~~LAr~~la~~~~~~ 847 (924)
|..-..... ++. ++ +++ .++++++.... ..+ .+...--+++.||..+-.
T Consensus 143 PslF~~lk~----Ly~---d~--~K~-~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~------ 206 (517)
T PF12569_consen 143 PSLFSNLKP----LYK---DP--EKA-AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY------ 206 (517)
T ss_pred chHHHHHHH----HHc---Ch--hHH-HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH------
Confidence 443333322 221 22 222 22333333322 211 122233467888888887
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 002424 848 SQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVL 906 (924)
Q Consensus 848 ~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~ 906 (924)
.|++++|++++++|++.= .-.-+.+..+|+++...|+..+|.++....|.+..
T Consensus 207 ~g~~~~Al~~Id~aI~ht------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHT------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred hCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 899999999999998752 33457889999999999999999998888887754
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.28 E-value=0.024 Score=62.59 Aligned_cols=225 Identities=19% Similarity=0.187 Sum_probs=133.7
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc-CCHHHHHHHHHHHhhhhhcc
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR-GHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~-G~~~~A~~~l~~ll~l~~~~ 698 (924)
+.+.......-+++.+..+|.|+.++.-+.. ........+++ . ..++.. ++-..+ +..+..+....
T Consensus 30 ~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~~~~l~av~~--l-a~y~~~~~~~e~~---l~~l~~~~~~~ 96 (290)
T PF04733_consen 30 SPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SSSPELQAVRL--L-AEYLSSPSDKESA---LEELKELLADQ 96 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TSSCCCHHHHH--H-HHHHCTSTTHHCH---HHHHHHCCCTS
T ss_pred CchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CCChhHHHHHH--H-HHHHhCccchHHH---HHHHHHHHHhc
Confidence 3445555666677788889998877554431 11111111111 0 111222 233333 33333322211
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 699 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
. + ..-..+....|.++...|++++|++.+.+. ....++.+..+++++.||++.|...+... +
T Consensus 97 ~--~-~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~----~ 158 (290)
T PF04733_consen 97 A--G-ESNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNM----Q 158 (290)
T ss_dssp ------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH----H
T ss_pred c--c-cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHH----H
Confidence 1 1 112345566777788889999999888642 23566667888999999999998777554 3
Q ss_pred HhCCcHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLS--FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~--lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
+..++ .++..|+..|.. .|...+++|...+++.... +|. ....++.+|.|++. .|++++|..
T Consensus 159 ~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~---t~~~lng~A~~~l~------~~~~~eAe~ 222 (290)
T PF04733_consen 159 QIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGS---TPKLLNGLAVCHLQ------LGHYEEAEE 222 (290)
T ss_dssp CCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S-----SHHHHHHHHHHHHH------CT-HHHHHH
T ss_pred hcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCC---CHHHHHHHHHHHHH------hCCHHHHHH
Confidence 33444 345557776644 6653448999999996432 222 34568889999999 899999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH-HHHHHH
Q 002424 857 PLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL-AEREEA 897 (924)
Q Consensus 857 ~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~-~~r~~a 897 (924)
.|++|+. .-....+++..++.+...+|.. +..+++
T Consensus 223 ~L~~al~------~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 223 LLEEALE------KDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp HHHHHCC------C-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHH------hccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 9999864 2234567899999999999988 444443
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.017 Score=62.32 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
-.++..++|.+|...+.+++.+ ||. -+..+.+++..|.++|.|+.|++-++.++.+ ...-.+++..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l-------~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~R 154 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL-------DPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGR 154 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc-------CCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHH
Confidence 5778899999999999999987 322 2466788999999999999999999998874 2233678889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.+|...|+++.|+..+.+||++=
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhccC
Confidence 9999999999999999999998873
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=96.26 E-value=0.046 Score=54.51 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
..+..+..|.-....|++++|...+.-+.. ...++.+-++.+|.++...|+++.|+..+..|..+.. .++
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp-- 105 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCI------YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDY-- 105 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCC--
Confidence 678899999999999999999999985433 2345577889999999999999999999998888764 333
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
+...+.|..++.+|+. +.|+..++.++.. ..+..++.+|...|-
T Consensus 106 --~p~f~agqC~l~l~~~--~~A~~~f~~a~~~---~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 106 --RPVFFTGQCQLLMRKA--AKARQCFELVNER---TEDESLRAKALVYLE 149 (165)
T ss_pred --CccchHHHHHHHhCCH--HHHHHHHHHHHhC---cchHHHHHHHHHHHH
Confidence 2267799999999999 9999999999883 456666666644443
No 155
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.05 Score=58.38 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=102.3
Q ss_pred HHHHhhcCCCC-ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHH
Q 002424 609 LIYATCFSDGS-SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKV 687 (924)
Q Consensus 609 ~~~~~~~~~~~-~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~ 687 (924)
+....||..-+ ..-....-..--|+.+-..|.|.+|++++...... + .-+-..++++- ......||+..++.+
T Consensus 61 ~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~---~L~~~~lqLqa--AIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 61 ALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-P---ALHSRVLQLQA--AIKYSEGDLPGSRSL 134 (459)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-H---HHHHHHHHHHH--HHhcccccCcchHHH
Confidence 34456766521 12222333344466677789999999887743321 0 00112334332 345679999999999
Q ss_pred HHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 688 CDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 688 l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
++|+.. ++.+.+..+.|-++...|+|++|+..++.+++. .|...+ +-..+|.+|.+.|++..|+
T Consensus 135 veQlp~----------en~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyqpl---lAYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 135 VEQLPS----------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPL---LAYNLALAHYSSRQYASAL 198 (459)
T ss_pred HHhccC----------CCccchhccchheeeccccHHHHHHHHHHHHhh---cCCCch---hHHHHHHHHHhhhhHHHHH
Confidence 988743 125677899999999999999999999999874 244433 3457889999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 002424 768 PYALASLSFCQLLNLD 783 (924)
Q Consensus 768 ~~l~~AL~la~~~g~~ 783 (924)
.+..+-+...-+.+-.
T Consensus 199 k~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHhhhhcCCc
Confidence 9987776665444443
No 156
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.26 E-value=0.048 Score=68.07 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH--------
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC-------- 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-------- 777 (924)
.+.++..++..+...|++++|.+.++.+++. ....++++..+|.++...+++..+... .++.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 7889999999999999999999999987763 455578888899999999998777544 444443
Q ss_pred -----HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChH
Q 002424 778 -----QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPE 852 (924)
Q Consensus 778 -----~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~ 852 (924)
...++-...-.|+..||.+|-.+|.. ++|...++++|..= ..-+.+++.+|..+.- . +++
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~--~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae------~-dL~ 166 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNEN--KKLKGVWERLVKAD------RDNPEIVKKLATSYEE------E-DKE 166 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcC------cccHHHHHHHHHHHHH------h-hHH
Confidence 33344444457999999999999999 99999999998764 4667899999999888 6 999
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002424 853 AVLDPLRQASEELQVLEDHELAAEAFYLIA 882 (924)
Q Consensus 853 ~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA 882 (924)
+|+.++.+|+..|-.-+......++..++-
T Consensus 167 KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 167 KAITYLKKAIYRFIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 999999999999887777777666555443
No 157
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.23 E-value=0.049 Score=57.81 Aligned_cols=121 Identities=14% Similarity=0.053 Sum_probs=94.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
+|..+...|+|.+|...+.++...-|. +.+.|... +-.+...|++++|+..+.+++.++.. ...+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~--d~~~~~~l----gaaldq~Gr~~~Ar~ay~qAl~L~~~--------~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPT--DWEAWNLL----GAALDQLGRFDEARRAYRQALELAPN--------EPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCC--ChhhhhHH----HHHHHHccChhHHHHHHHHHHHhccC--------Cchhh
Confidence 888899999999999999988866442 32333322 14667899999999999999998542 45788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.+++..++-.||++.|..++..+-. ......++..+++.+.-..|++..|.....
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l------~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYL------SPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHh------CCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999999999999987744 233446777888889999999988876553
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.18 E-value=0.064 Score=58.36 Aligned_cols=93 Identities=9% Similarity=0.005 Sum_probs=76.5
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
+..|+|++|...++.++..++. ..-...+++.+|.++...|++++|+..++.++.. ..+......++..+|.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~-----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPD-----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPKAADAMFKVGV 225 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcchhHHHHHHHH
Confidence 4568999999999999886552 2235688999999999999999999999988763 3455677889999999
Q ss_pred HHHhcCChhhhHHHHHHHHHH
Q 002424 756 IHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~l 776 (924)
++...|++..|...+.+.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999866543
No 159
>PLN02789 farnesyltranstransferase
Probab=96.18 E-value=1.5 Score=49.11 Aligned_cols=225 Identities=7% Similarity=-0.139 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+...++..+-.++...+++++|+.....+.+.-|..- ..|.-+- ......| ++.++...+.+++...+
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y--taW~~R~----~iL~~L~~~l~eeL~~~~~~i~~np----- 103 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY--TVWHFRR----LCLEALDADLEEELDFAEDVAEDNP----- 103 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH--HHHHHHH----HHHHHcchhHHHHHHHHHHHHHHCC-----
Confidence 4444554454556778899999999999887755322 2344331 1223446 68999999999987522
Q ss_pred CcchHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQF--SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~--~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. ...++..++.++...|+. .++++.++.++.. ......++..++.+....|+++.|+..+.+++.+--.
T Consensus 104 --k-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 104 --K-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred --c-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 2 456788888888888874 6788888887763 2345778999999999999999999999999887422
Q ss_pred hCCcHHHHHHHHHHHHHHHHc---CCC--hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 780 LNLDLLKASATLTLAELWLSF---GPN--HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~l---G~~--~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
+ ..|..+.+.+...+ |.. ..++++.....++...-...+. +..++-++.... ...+...+|
T Consensus 175 N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa------W~Yl~~ll~~~~--~~l~~~~~~ 240 (320)
T PLN02789 175 N------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP------WRYLRGLFKDDK--EALVSDPEV 240 (320)
T ss_pred c------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH------HHHHHHHHhcCC--cccccchhH
Confidence 2 23444455554444 322 1246788877877776555553 333343333311 112444557
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 002424 855 LDPLRQASEELQVLEDHELAAEAFYLIAIVFDK 887 (924)
Q Consensus 855 l~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~ 887 (924)
++...++.. ..... ..++..|+.+|..
T Consensus 241 ~~~~~~~~~--~~~~s----~~al~~l~d~~~~ 267 (320)
T PLN02789 241 SSVCLEVLS--KDSNH----VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhhc--ccCCc----HHHHHHHHHHHHh
Confidence 776666554 11222 2356666666664
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.07 E-value=0.096 Score=56.99 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=78.9
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 626 LAHVKLIQHL-AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 626 ~a~~~La~~~-a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
......|..+ ...|+|++|...|+.....+|......-....+ +..++..|++.+|...+..+...++ |..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~L---G~~y~~~g~~~~A~~~f~~vv~~yP-----~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWL---GQLNYNKGKKDDAAYYFASVVKNYP-----KSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHHCC-----CCc
Confidence 3445556655 457999999999999999998654311111111 1577899999999999999998655 223
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
-...+++.+|.++...|++++|.+.+++++..
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37789999999999999999999999988874
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.05 E-value=0.11 Score=59.77 Aligned_cols=116 Identities=18% Similarity=0.089 Sum_probs=89.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 633 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 633 ~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
..+...++|++|..++++..+..|+ ....+. ..++..++-.+|.+++.+++...+ . ..+.+..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe----v~~~LA-----~v~l~~~~E~~AI~ll~~aL~~~p----~----d~~LL~~ 239 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE----VAVLLA-----RVYLLMNEEVEAIRLLNEALKENP----Q----DSELLNL 239 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc----HHHHHH-----HHHHhcCcHHHHHHHHHHHHHhCC----C----CHHHHHH
Confidence 3345578999999999987776542 111122 566678899999999999886321 1 2788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.+..++..|+++.|++.++++... .....+++..+|.+|...|+++.|+-.+.
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999988763 45668899999999999999999985554
No 162
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.03 E-value=0.013 Score=43.08 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcCCh
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQHSND 407 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~Aqe~~D~ 407 (924)
|+.+||.+|...|++++|+.++++++.++++..|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~~ 35 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPEDR 35 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCC
Confidence 68899999999999999999999999999887764
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.97 E-value=0.13 Score=59.00 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=97.3
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
...++++.|..+++++... || ++...++.+++..++..+|++.+.+++.... .....|...|.
T Consensus 180 ~~t~~~~~ai~lle~L~~~-------~p----ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p------~d~~LL~~Qa~ 242 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRER-------DP----EVAVLLARVYLLMNEEVEAIRLLNEALKENP------QDSELLNLQAE 242 (395)
T ss_pred hhcccHHHHHHHHHHHHhc-------CC----cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHH
Confidence 4578999999999999773 44 3556689999999999999999999996322 12888999999
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+...|+++.|+..+.+|..++= ..-.....||.+|..+|+. +.|+..++ ++|..
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d~--e~ALlaLN-s~Pm~ 297 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGDF--ENALLALN-SCPML 297 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCCH--HHHHHHHh-cCcCC
Confidence 99999999999999999988872 2346778899999999998 99998888 56776
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.96 E-value=0.037 Score=61.17 Aligned_cols=146 Identities=19% Similarity=0.119 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
...-.|.++...|++++|++.+... +.-....+.. ..++..||.+.|...+..+... . .| .
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~V----qi~L~~~R~dlA~k~l~~~~~~----~-eD---~ 164 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAV----QILLKMNRPDLAEKELKNMQQI----D-ED---S 164 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHH----HHHHHTT-HHHHHHHHHHHHCC----S-CC---H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHH----HHHHHcCCHHHHHHHHHHHHhc----C-Cc---H
Confidence 3444566677789999998887632 1111122222 5778999999999999888664 1 14 5
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 707 TEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 707 a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..+.+..+++.+..| .+.+|.-.++++... . ......+..+|.++...|++++|...+.+|+..- .
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~ 232 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---F---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------P 232 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------C
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------c
Confidence 677777888888888 589999999886331 1 1235678899999999999999999999887532 1
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 002424 785 LKASATLTLAELWLSFGPN 803 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~ 803 (924)
....++.+++.+...+|.+
T Consensus 233 ~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 2345677788888889997
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.94 E-value=0.036 Score=46.14 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=48.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..++..|++++|..++++++... |. ...+++.+|.++..+|++++|+..+++++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-------P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-------PD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-------TT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57789999999999999998852 22 7899999999999999999999999998874
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.89 E-value=0.14 Score=61.28 Aligned_cols=137 Identities=13% Similarity=-0.005 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh----hhHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV----LGIPYALASLSFCQ 778 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~----~Al~~l~~AL~la~ 778 (924)
.+.-.+..|.-++..++ +..|+++++++++. ......+.+ .++.+|.....+. ..+..+.+++..+.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l----dP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS----EPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh----CCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 56666777777666655 77899999998874 222333333 3344443322221 22334444444433
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 858 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L 858 (924)
........+.+...+|.++...|++ ++|...+++++.+- . -+.+|..+|+++.. .|++++|++++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~--~~A~~~l~rAl~L~----p---s~~a~~~lG~~~~~------~G~~~eA~~~~ 476 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKT--DEAYQAINKAIDLE----M---SWLNYVLLGKVYEL------KGDNRLAADAY 476 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcC----C---CHHHHHHHHHHHHH------cCCHHHHHHHH
Confidence 3222222345666667777778887 99999999998774 1 25799999999999 89999999999
Q ss_pred HHHHH
Q 002424 859 RQASE 863 (924)
Q Consensus 859 ~~A~~ 863 (924)
++|+.
T Consensus 477 ~~A~~ 481 (517)
T PRK10153 477 STAFN 481 (517)
T ss_pred HHHHh
Confidence 99975
No 167
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.055 Score=60.77 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
...+.++++.+++.+++|.+|+...+.+|+ ....+..+|..+|+++...|+++.|+..+.+++.+-
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLE------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHh------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 557889999999999999999999999987 356678999999999999999999999999999885
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.77 E-value=1.6 Score=46.77 Aligned_cols=174 Identities=16% Similarity=0.042 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
-+..+.+-|......|+|++|...++.+..++|-....+-..+-+. ..+...|++++|...+++-..+++... +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~---yA~Yk~~~y~~A~~~~drFi~lyP~~~--n- 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLA---YAYYKNGEYDLALAYIDRFIRLYPTHP--N- 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHH---HHHHhcccHHHHHHHHHHHHHhCCCCC--C-
Confidence 3566788888899999999999999999988875544432222211 577899999999999999999988665 3
Q ss_pred chHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHcccchhH--------------HHHHHHHHHHHHhcCChh
Q 002424 704 DLKTEASLRHARTLL-----AANQFSEAAAVAHSLFCMCYKFNLQVEN--------------ASVLLLLAEIHKKSGNAV 764 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~-----~~G~~~eAl~~l~~aL~~~~~~gd~~~~--------------a~al~~la~i~~~~G~~~ 764 (924)
...+.+..|..+. ...|...+.+.+...-....+..+.+-. +.--+..|..|.+.|.+.
T Consensus 107 --~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 107 --ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred --hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 5578888887764 3445566666555554444444433322 223567788899999999
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHH
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASN 810 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~ 810 (924)
.|...+++.++- +-.....-.++-.|.+.+.++|.. ++|-+
T Consensus 185 AA~nR~~~v~e~---y~~t~~~~eaL~~l~eaY~~lgl~--~~a~~ 225 (254)
T COG4105 185 AAINRFEEVLEN---YPDTSAVREALARLEEAYYALGLT--DEAKK 225 (254)
T ss_pred HHHHHHHHHHhc---cccccchHHHHHHHHHHHHHhCCh--HHHHH
Confidence 988888776654 334444556677788888888887 55544
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.70 E-value=0.034 Score=46.64 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
+..|+|++|..++++++...+ + ...+.+.++.+++..|++++|.+.+++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-----D---NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-----T---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999988633 1 467888999999999999999999998876
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.67 E-value=0.035 Score=46.74 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHhH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG-PNHAKMASNLIQQALPL 818 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG-~~~~~~Al~lLe~aLp~ 818 (924)
+.++..+|.++...|++.+|+..+.+|+.+.- ..+.+...+|.++..+| .. ++|+..++.++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p------~~~~~~~~~g~~~~~~~~~~--~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP------NNAEAYYNLGLAYMKLGKDY--EEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST------THHHHHHHHHHHHHHTTTHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHc
Confidence 67889999999999999999999999999842 24568899999999999 56 9999999998754
No 171
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.66 E-value=0.21 Score=51.07 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=91.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
+.++..-++...++..+|.++...|++++|++.+.++.+.-. +..+..-+++++. +..+..|+|..+..++.++..+
T Consensus 26 ~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~--~~~~~id~~l~~i-rv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 26 AKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT--SPGHKIDMCLNVI-RVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC--CHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHH
Confidence 445556778889999999999999999999999998776422 2222233344443 7889999999999999999998
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
....+ |.+.........|...+..|+|.+|.+.+-++...
T Consensus 103 ~~~~~--d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 103 IEKGG--DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred Hhccc--hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 66544 67777778888899999999999999998877653
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.65 E-value=0.68 Score=46.99 Aligned_cols=100 Identities=16% Similarity=0.135 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.-.++++..+.+.|++.||...+++++. |.--+...+++.+|+.....|++..|...+..-.+ ++-.....
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e----~~pa~r~p 160 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME----YNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh----cCCccCCC
Confidence 4467899999999999999999999988 77777788999999999999999999887764433 33344445
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...+.+|.++...|.+ +.|..-++.++.-
T Consensus 161 d~~Ll~aR~laa~g~~--a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKY--ADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCc--hhHHHHHHHHHHh
Confidence 5667799999999999 8888887777544
No 173
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=3 Score=46.13 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=140.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR-TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~-ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
..+...|+..+-..++.++...+..++ -+. .+....-+.+ .+.--+..+.-++++.++++.+.+......+-..-.
T Consensus 56 ~ll~~~~~~~~lr~li~~~Rpf~~~v~--Kak-aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Lea 132 (411)
T KOG1463|consen 56 DLLAKEGDAEELRDLITSLRPFLSSVS--KAK-AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEA 132 (411)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 566677777777777777666555444 111 1111111122 222334555667777777777766665566666677
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hhCCHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRAR 830 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl-~~gd~~~~A~ 830 (924)
.+..+|...++|..|+.....-+.--++..+......+.+.=..++..+... .+|..-|..+-...- -.-.+.++|.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl--~KakasLTsART~AnaiYcpPqlQa~ 210 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNL--PKAKASLTSARTTANAIYCPPQLQAT 210 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcc--hhHHHHHHHHHHhhcccccCHHHHHH
Confidence 7888899999999999888888777788888777666666667777777776 777776666544332 1245677777
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
.-+.-|-.|.+ ..++..|-.|+=+|++.|..++++...+.++-.+-..--.++.+++
T Consensus 211 lDLqSGIlha~------ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~dd 267 (411)
T KOG1463|consen 211 LDLQSGILHAA------EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDD 267 (411)
T ss_pred HHHhccceeec------ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHH
Confidence 76666666666 5778889999999999999999988888777655444444444444
No 174
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=0.49 Score=48.40 Aligned_cols=92 Identities=20% Similarity=0.112 Sum_probs=80.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++++|...+.+.+.. ..|......+..|+++++...|.+++|+..++.. .+.-+..++.-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~~~el 164 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAIVAEL 164 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHHHHHH
Confidence 6788999999999999999874 3377788999999999999999999999988854 455677888899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+|.++...|+-..|+.-+.+|+..
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 999999999999999999988876
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.47 E-value=0.14 Score=61.04 Aligned_cols=124 Identities=14% Similarity=0.031 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS----EAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~----eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+++..|..+++++..+ ||. -+.++..++.++.....+. ..+..+.+.+.............+++..+
T Consensus 355 ~~~~~~A~~lle~Ai~l-------dP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~al 426 (517)
T PRK10153 355 AKSLNKASDLLEEILKS-------EPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEIL 426 (517)
T ss_pred HHHHHHHHHHHHHHHHh-------CCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHH
Confidence 34488899999999986 333 2344444444443332222 22333333333222221122224677788
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
|.++...|++++|...+.+|+.+.. . +.+...+|.++...|++ ++|.+.+++++.+
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~p-----s--~~a~~~lG~~~~~~G~~--~eA~~~~~~A~~L 482 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLEM-----S--WLNYVLLGKVYELKGDN--RLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-----C--HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc
Confidence 8889999999999999999998862 1 56888899999999999 9999999999754
No 176
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.45 E-value=1.8 Score=46.65 Aligned_cols=181 Identities=13% Similarity=0.071 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc------------hhHHHHHHHHHHHHHhcCCh------------
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ------------VENASVLLLLAEIHKKSGNA------------ 763 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~------------~~~a~al~~la~i~~~~G~~------------ 763 (924)
..-+.+..+++..|+..+|++.++.-+..+...-++ -|.++=...+|++......+
T Consensus 11 ~i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~ 90 (247)
T PF11817_consen 11 FIAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGF 90 (247)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcch
Confidence 344567889999999999999999888877654333 34555566777777665521
Q ss_pred --hhhHHHHHHHHHHHHHhC---C-------------------cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 764 --VLGIPYALASLSFCQLLN---L-------------------DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 764 --~~Al~~l~~AL~la~~~g---~-------------------~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
..|-.++.+--..+.... + ....-.... +... ...|..|-...+++|+.++...
T Consensus 91 yy~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~e~~~~hs~~iI~lL~~A~~~f 168 (247)
T PF11817_consen 91 YYQIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYP-LLQS-EEKGVDHSKLIIELLEKAYEQF 168 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHH-hhhc-cccccchHHHHHHHHHHHHHHH
Confidence 122222222222222221 0 000001111 0000 1123346688999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 820 LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 820 l~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
...+...........+|+-|.. .|++.+|+.+|+.+...|++=+|..-...++..+......+|+.+.--.
T Consensus 169 ~~~~~~R~~~~l~~~~A~ey~~------~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 169 KKYGQNRMASYLSLEMAEEYFR------LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHhccchHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999987433
No 177
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.87 Score=48.73 Aligned_cols=147 Identities=16% Similarity=0.064 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.....-+.+++.-|++++|++.+..... ..+.-+.-+|+++..+.+-|...+.+...+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~-----------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-------- 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN-----------LEAAALNVQILLKMHRFDLAEKELKKMQQIDED-------- 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------
Confidence 4566778888999999999998875322 445556677888999999999888888888864
Q ss_pred HHHHHHHHHHHHc--CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSF--GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 788 ~al~~La~l~~~l--G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.++..||..|..+ |-.+.+.|.-++++--.. ..-.-..++..|.|++. .|++++|...|+.|+.-.
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~------~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQ------LGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHH------hcCHHHHHHHHHHHHhcc
Confidence 4556689988654 444556677776664221 22233466778899999 999999999999998855
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~ 891 (924)
-+. .+++..+-..-..+|..
T Consensus 238 ~~d------petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 238 AKD------PETLANLIVLALHLGKD 257 (299)
T ss_pred CCC------HHHHHHHHHHHHHhCCC
Confidence 333 56777777777777765
No 178
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.42 E-value=0.35 Score=47.23 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+.+-|......|+|++|.+.|+....+||.-....-.-+.+ + ..++..|+|.+|...+++...+.+....
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l--~-yayy~~~~y~~A~a~~~rFirLhP~hp~---- 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDL--A-YAYYKQGDYEEAIAAYDRFIRLHPTHPN---- 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHH--H-HHHHHccCHHHHHHHHHHHHHhCCCCCC----
Confidence 45667888888999999999999999999998554433222222 1 6889999999999999999999776553
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 002424 705 LKTEASLRHARTLLAANQ 722 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~ 722 (924)
...+++..|.....+.+
T Consensus 83 -vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 83 -VDYAYYMRGLSYYEQDE 99 (142)
T ss_pred -ccHHHHHHHHHHHHHhh
Confidence 45889999988887765
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.41 E-value=3.2 Score=49.44 Aligned_cols=229 Identities=14% Similarity=0.030 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++...+.-....+.|...+...+..+..|++++++- .+.+...--.|+-.+|...++..+.. |+. .
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgesl------AmkGL~L~~lg~~~ea~~~vr~glr~-------d~~-S 74 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESL------AMKGLTLNCLGKKEEAYELVRLGLRN-------DLK-S 74 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhH------HhccchhhcccchHHHHHHHHHHhcc-------Ccc-c
Confidence 445556666678899999999999999999998843 11112334689999999999887662 322 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..++.-.|.+...-.+|++|+.++..++.+ ...+...+.-++.+..+.|+++-.+..=.+-+.+-- ..
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~------~~ 142 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP------SQ 142 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh------hh
Confidence 578889999999999999999999999874 234466777788888888888655443333333321 11
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH--HhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA--KCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA--r~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
-.....+|-.+.-+|.. ..|..++++-.-...+.-+.....+.-..|= ..+.. .|...+|++.+..=...
T Consensus 143 ra~w~~~Avs~~L~g~y--~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E------~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEY--KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE------AGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH------cccHHHHHHHHHhhhhH
Confidence 12344566666667877 8999999888777765556555555444333 23333 56677777776643332
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAERE 895 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~ 895 (924)
+ -+... .....|.++..+|+.+++.
T Consensus 215 i---~Dkla---~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 215 I---VDKLA---FEETKADLLMKLGQLEEAV 239 (700)
T ss_pred H---HHHHH---HhhhHHHHHHHHhhHHhHH
Confidence 2 11112 1223556666667766644
No 180
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.37 E-value=0.49 Score=54.42 Aligned_cols=143 Identities=19% Similarity=0.060 Sum_probs=102.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|.+++|+..+..+....+ | -....-..+++++..|+..+|.+.++.++. -++.. .-+.++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P-----~---N~~~~~~~~~i~~~~nk~~~A~e~~~kal~-----l~P~~-~~l~~~ 379 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQP-----D---NPYYLELAGDILLEANKAKEAIERLKKALA-----LDPNS-PLLQLN 379 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCc-cHHHHH
Confidence 355688999999999999887433 2 456678899999999999999999999987 33333 667889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|+.+.+.|++.+|+..+.+.+. ....-......||..+..+|.. .+|..-.-+.+ .....+.+|..+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~--~~a~~A~AE~~----~~~G~~~~A~~~ 447 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNR--AEALLARAEGY----ALAGRLEQAIIF 447 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCch--HHHHHHHHHHH----HhCCCHHHHHHH
Confidence 99999999999999988876543 2222334456678888778876 55555444443 233556666666
Q ss_pred HHHHHhhhc
Q 002424 833 IAEAKCLLS 841 (924)
Q Consensus 833 ~~LAr~~la 841 (924)
...|+-...
T Consensus 448 l~~A~~~~~ 456 (484)
T COG4783 448 LMRASQQVK 456 (484)
T ss_pred HHHHHHhcc
Confidence 666644443
No 181
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.36 E-value=3.7 Score=49.21 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhhCchHHHHhH-HHHHHhhcCCCC------------ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVN-TLIYATCFSDGS------------SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAE 652 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~-~~~~~~~~~~~~------------~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~ 652 (924)
.....++.+++.-|--- ..++ -+-.+.||.+.. -++.....--..|.++...|.|+.|..++-+|.
T Consensus 655 a~alik~elydkagdlf-eki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLF-EKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHHHHhhHHHHhhhhHH-HHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 34566777787777432 1121 133455665421 233334444556778888999999988887665
Q ss_pred H
Q 002424 653 E 653 (924)
Q Consensus 653 ~ 653 (924)
-
T Consensus 734 ~ 734 (1636)
T KOG3616|consen 734 C 734 (1636)
T ss_pred h
Confidence 3
No 182
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.26 E-value=5.4 Score=43.78 Aligned_cols=140 Identities=15% Similarity=0.080 Sum_probs=94.2
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH-cc--c-----chh
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYK-FN--L-----QVE 745 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~-~g--d-----~~~ 745 (924)
++..||++.|..++.++..+.....+....--+...++.|.-+...+ ++++|..+++++.+++.. .. . ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 57889999999999998886543344445556778899999999999 999999999999999754 11 1 134
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+..++..++.++...+.++.. .-+.+++... .+++++.....-.+ +++...+.. +++.+.+.+.+-.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~-~ka~~~l~~l~~e~~~~~~~~~L~l---~il~~~~~~--~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESV-EKALNALRLLESEYGNKPEVFLLKL---EILLKSFDE--EEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHhCCCCcHHHHHHH---HHHhccCCh--hHHHHHHHHHHHhcc
Confidence 577999999999999988533 3355556665 44455332221111 122224554 666666666555543
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.24 E-value=6.2 Score=44.52 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-++.-...|+|++|...|+.+. ++.....+.+..++.-+-+.|+...|+++.+++...++.+. .+.
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl------~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~--------WA~ 191 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAML------DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP--------WAA 191 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHh------cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc--------hHH
Confidence 3555567899999999888544 23334444444444677789999999999999988755432 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH--HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS--VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~--al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
...-+-.++.||++.|+++++.......-..+.-.+.+ .|..++.-...+ ++..|.....+++.+.-.. .--
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdl-----vPa 265 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDL-----VPA 265 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCcc-----chH
Confidence 33344557999999999999987664332333333333 444555444444 3677888888887775422 111
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
+ +.-+..+..-|.. .++-.++|.+
T Consensus 266 a-v~AAralf~d~~~--rKg~~ilE~a 289 (531)
T COG3898 266 A-VVAARALFRDGNL--RKGSKILETA 289 (531)
T ss_pred H-HHHHHHHHhccch--hhhhhHHHHH
Confidence 1 1134444556665 6666665543
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.04 E-value=0.09 Score=60.36 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHH-HHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENA-SVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a-~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.+++++++|..+...|+|++|+..+++++++ .....++ .++.++|.+|...|+.++|+..+.+|+++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999985 2223333 57999999999999999999999999997
No 185
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.01 E-value=1 Score=42.37 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=79.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch---h
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMD----LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV---E 745 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~----~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~---~ 745 (924)
.+.+.-|-|.+|..-++.+....+.+.+.... --+-+...++..+..+|+|++++...+.+|.++.+.|.-. +
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 67888999999999999999887766543311 1245666788888999999999999999999988766442 2
Q ss_pred H--HHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 746 N--ASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 746 ~--a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
. +.+-..+|..+...|+++.|+..+..+-++-
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2 5577889999999999999999998877765
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.33 Score=54.73 Aligned_cols=101 Identities=18% Similarity=0.106 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC--ch---H----HHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhh
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS--KS---R----ILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~--~~---~----~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~ 696 (924)
..---|..+...|+|..|...++.|...+.... +. + ....+ ++++ ..++..++|.+|...+.+.+.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA-~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLA-ACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHH-HHHHhhhhHHHHHHHHHHHHhc--
Confidence 334457788899999999999999887654221 11 1 12222 3333 6788999999999999999996
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
|+. -..++++.|.+++..|+|+.|+..++.++.+
T Consensus 287 -----~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 287 -----DPN-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -----CCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 221 5789999999999999999999999999885
No 187
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=2.9 Score=46.19 Aligned_cols=211 Identities=16% Similarity=0.068 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHH-HcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSL-HRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al-~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+++..++..|++++=..+++...+-+...+..+..- ++ .+. +... .-+....-..++.....-+.+-. ..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR-~Lv-d~~~~~~~~~~~~i~l~~~cIeWA~~ek--Rt 124 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVR-SLV-DMFLKIDDGTGDQIELCTECIEWAKREK--RT 124 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH-HHHccCCCCcchHHHHHHHHHHHHHHHh--HH
Confidence 4568899999999999999888888887777666654321 11 110 1111 12222333333443333222111 23
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..+.....+++.++...++|.+|+.++..++...++..|...-..+.+.-.-+|....+..+|..-+..|-..|....-+
T Consensus 125 FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp 204 (411)
T KOG1463|consen 125 FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP 204 (411)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC
Confidence 34556677899999999999999999999999999999998888888888889999999989888887777777555544
Q ss_pred H-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH--HHHHHHHHHHHHhhhcC
Q 002424 784 L-LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL--ELRARAFIAEAKCLLSD 842 (924)
Q Consensus 784 ~-~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~--~~~A~a~~~LAr~~la~ 842 (924)
. ..|..-+ ...++..-.+ .|..|..++-++.+-.-..++. ...+.=|++|.+..+..
T Consensus 205 PqlQa~lDL-qSGIlha~ek-DykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 205 PQLQATLDL-QSGILHAAEK-DYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred HHHHHHHHH-hccceeeccc-ccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 4 4444433 4444333222 3588999999999988888773 34444578888888774
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=9.4 Score=42.50 Aligned_cols=203 Identities=16% Similarity=0.085 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHH-------------H-HHHcCCHHHHHHHHHH
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHE-------------R-SLHRGHLKLAQKVCDE 690 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~-------------~-al~~G~~~~A~~~l~~ 690 (924)
...-..+|..+....-|+-+.+++.-=+..||...-.. -++....|+ . .-....|..+..+++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~--NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK--NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH--HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 34456778888888889999888887666665332110 111111100 0 0012234455555553
Q ss_pred HhhhhhccCC------CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh
Q 002424 691 LGVMASSVTG------VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV 764 (924)
Q Consensus 691 ll~l~~~~~~------~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~ 764 (924)
=+.+|+.-.+ .=.....++..+++.+++.+||-.+|..++.+.-. ....-.+++|.++.+.|+-.
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P---------ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP---------TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC---------CChHHHHHHHHHHHHhhhhc
Confidence 3332221100 00112468999999999999999999988765411 11122334555555555543
Q ss_pred hhHHHHHHHHHH--------------------------HHHhCCcHHH-----H------HHHHHHHHHHHHcCCChHHH
Q 002424 765 LGIPYALASLSF--------------------------CQLLNLDLLK-----A------SATLTLAELWLSFGPNHAKM 807 (924)
Q Consensus 765 ~Al~~l~~AL~l--------------------------a~~~g~~~~~-----A------~al~~La~l~~~lG~~~~~~ 807 (924)
-..+++.-|-.. ..+..+.... + .-.+++|...++.|.. .+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny--~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY--VE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh--HH
Confidence 333333211111 1111110000 0 1234577777888887 78
Q ss_pred HHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 808 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 808 Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
|.+++-++ +..+...+-...+.|||||+..+.+
T Consensus 412 aEelf~~i-----s~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 412 AEELFIRI-----SGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHhhh-----cChhhhhhHHHHHHHHHHHHhcCCc
Confidence 87776554 2222234455677899999995443
No 189
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=8.9 Score=41.55 Aligned_cols=241 Identities=10% Similarity=-0.003 Sum_probs=155.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHH--HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI--LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~--~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
+|.-.....+|++|...+.+.+..-.+...-.. .-...--.+..+...|++..-.+...+......... -|...-.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft--k~k~~Ki 86 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT--KPKITKI 86 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc--chhHHHH
Confidence 444555667889998888876654211111110 001111123788899999888888877766544322 1111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
.....-..-.....++.-+..++..++.+.+......+...-+-+..+|.+.|.|..|+.....-+.--.+..+......
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 11111122234556777888888888877766666666667778889999999999999998888887788877766666
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl-~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
+.+.=..++..+... .++..-+..+-..+- ..-.+.++|+.-..-|-.+.. ..++..|-.|+=+|++.|..
T Consensus 167 vhllESKvyh~irnv--~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcd------d~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 167 VHLLESKVYHEIRNV--SKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCD------DRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred hhhhhHHHHHHHHhh--hhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeec------cccchhHHHHHHHHHhcccc
Confidence 666666677666665 566655555433321 123556677665555544444 56778899999999999999
Q ss_pred hcCHHHHHHHHHHH
Q 002424 868 LEDHELAAEAFYLI 881 (924)
Q Consensus 868 l~~~~~~~~vl~~l 881 (924)
+.+....|..+..+
T Consensus 239 l~~d~kAc~sLkYm 252 (421)
T COG5159 239 LKMDVKACVSLKYM 252 (421)
T ss_pred ccchHHHHHHHHHH
Confidence 99999998887654
No 190
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.43 E-value=0.27 Score=41.66 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
..++..++|.+|...+++++.+.+ . ....+...|.++...|++.+|++.++.+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-------~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-------D-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-------c-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 577899999999999999998733 2 567788899999999999999999999987543
No 191
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.23 E-value=7.3 Score=41.81 Aligned_cols=188 Identities=16% Similarity=0.083 Sum_probs=119.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+|.+|...++.+....+ . .+. .-.+.+.++..+...|+|++|+..+++-+... +.......+..+
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p--~--s~~-~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly---P~~~n~dY~~Yl 113 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHP--F--SPY-SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY---PTHPNADYAYYL 113 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--C--Ccc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---CCCCChhHHHHH
Confidence 466788999999999998876432 2 333 36788888888899999999999888877643 444445556666
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++.. .+....+++...-.|...+.++....-.. +...|..-+..+-.. .|.-
T Consensus 114 kgLs~~~---------------~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~---------LA~~ 169 (254)
T COG4105 114 KGLSYFF---------------QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA---------LAGH 169 (254)
T ss_pred HHHHHhc---------------cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH---------HHHH
Confidence 6665321 11222333333334444455554444443 222233322222111 1222
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
=+..|+-|+. .|.+..|+...++.++.| .+-....+++..+..+|..+|..++|++++++-
T Consensus 170 Em~IaryY~k------r~~~~AA~nR~~~v~e~y---~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 170 EMAIARYYLK------RGAYVAAINRFEEVLENY---PDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHH------hcChHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 2344566776 788888888777777764 566677889999999999999999999887764
No 192
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.19 E-value=5.3 Score=44.17 Aligned_cols=171 Identities=11% Similarity=-0.007 Sum_probs=122.8
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.++.+|++.+|-..-+..+.-||. -+++....+..++..|+...-...+++...-... |......+.-..
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~----dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA----DLPCYSYVHGMY 181 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch------hhhhhhhhhhHHHhccchhhhhhHHHHhccccCC----CCcHHHHHHHHH
Confidence 467789999998888888777773 2344444458889999999999988888764221 434456666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
+-.+...|-|++|.+...+++++-+ .-..+...+|.|+.-.|++.++.+.....-...++ -....++..-+-
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--s~mlasHNyWH~ 253 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--SWMLASHNYWHT 253 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--hhHHHhhhhHHH
Confidence 7788999999999999999987533 22445667889999999999998877665555442 233444445555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 794 AELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 794 a~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
|..++.-+. ++.|+.+++.-+..-++-.|
T Consensus 254 Al~~iE~ae--ye~aleIyD~ei~k~l~k~D 282 (491)
T KOG2610|consen 254 ALFHIEGAE--YEKALEIYDREIWKRLEKDD 282 (491)
T ss_pred HHhhhcccc--hhHHHHHHHHHHHHHhhccc
Confidence 655554444 49999999988777666666
No 193
>PLN02789 farnesyltranstransferase
Probab=94.15 E-value=6 Score=44.41 Aligned_cols=182 Identities=13% Similarity=0.006 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC--HHHHHHHHHHHhhhhhccCCCC
Q 002424 626 LAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--LKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 626 ~a~~~La~~~a~~G-~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--~~~A~~~l~~ll~l~~~~~~~D 702 (924)
.+....+.++...| .+++++..++.+.+..|.. ..+|.-+- ......|+ +.++..++..++.+ |
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn--yqaW~~R~----~~l~~l~~~~~~~el~~~~kal~~-------d 138 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN--YQIWHHRR----WLAEKLGPDAANKELEFTRKILSL-------D 138 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc--hHHhHHHH----HHHHHcCchhhHHHHHHHHHHHHh-------C
Confidence 46666777777778 6899999999988876532 22344331 11123444 36788888888875 3
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc---CCh----hhhHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS---GNA----VLGIPYALASLS 775 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~---G~~----~~Al~~l~~AL~ 775 (924)
|. -..++..++.++...|++++|++.++++++. + .....++..++.+..+. |.. ++++.+..+++.
T Consensus 139 pk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~ 211 (320)
T PLN02789 139 AK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL 211 (320)
T ss_pred cc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH
Confidence 32 5789999999999999999999999999874 2 22255667777776665 333 356777777777
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 776 FCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
+.-.+ ..+...++.++.. ++.. .+|...+.+++.. .. .-..|+..|+.++..
T Consensus 212 ~~P~N------~SaW~Yl~~ll~~~~~~l~~~--~~~~~~~~~~~~~--~~----~s~~al~~l~d~~~~ 267 (320)
T PLN02789 212 ANPRN------ESPWRYLRGLFKDDKEALVSD--PEVSSVCLEVLSK--DS----NHVFALSDLLDLLCE 267 (320)
T ss_pred hCCCC------cCHHHHHHHHHhcCCcccccc--hhHHHHHHHhhcc--cC----CcHHHHHHHHHHHHh
Confidence 65322 2445556666665 3444 5577777665541 11 223466666666654
No 194
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.08 E-value=1 Score=54.20 Aligned_cols=153 Identities=14% Similarity=-0.040 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
++|...+|.....+++|.++..+++...++-+-.-. .|.-. +..++..+++..|...|.+...+.+ |
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~wf~~----G~~ALqlek~q~av~aF~rcvtL~P-----d-- 551 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--TWFGL----GCAALQLEKEQAAVKAFHRCVTLEP-----D-- 551 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--HHHhc----cHHHHHHhhhHHHHHHHHHHhhcCC-----C--
Confidence 456666777777789999999999988877552211 22211 1577889999999999999988632 3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
.++++++++-.+++.|+-.+|...+.+++.. . +....++-+--.+-...|..+.|+..+.+-+.+-+...++-
T Consensus 552 -~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc----n--~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 552 -NAEAWNNLSTAYIRLKKKKRAFRKLKEALKC----N--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred -chhhhhhhhHHHHHHhhhHHHHHHHHHHhhc----C--CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 7899999999999999999999999999873 2 22223333333344588999999999999999987777665
Q ss_pred HHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELW 797 (924)
Q Consensus 785 ~~A~al~~La~l~ 797 (924)
.-......+.+..
T Consensus 625 vl~~iv~~~~~~~ 637 (777)
T KOG1128|consen 625 VLLIIVRTVLEGM 637 (777)
T ss_pred hhHHHHHHHHhhc
Confidence 5444444444433
No 195
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=0.7 Score=50.95 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=84.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhh
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGV 693 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~ 693 (924)
|...-..|.+...-.-+|..+...|+|++|+..++.+.+. +-.+...|. ++ -..+..|.|.+|..+...+..
T Consensus 47 fk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLA-----cc~FyLg~Y~eA~~~~~ka~k 119 (557)
T KOG3785|consen 47 FKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLA-----CCKFYLGQYIEAKSIAEKAPK 119 (557)
T ss_pred HhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHH-----HHHHHHHHHHHHHHHHhhCCC
Confidence 3333334444455556677777777777777777755541 111122222 11 344567777777765554322
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHH
Q 002424 694 MASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 694 l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~A 773 (924)
. ......+-.+-.+.||-.+=+..-+.+ +|.. .-.+.+|.+|...-.|++|++.+.+.
T Consensus 120 --------~----pL~~RLlfhlahklndEk~~~~fh~~L-------qD~~---EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 120 --------T----PLCIRLLFHLAHKLNDEKRILTFHSSL-------QDTL---EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred --------C----hHHHHHHHHHHHHhCcHHHHHHHHHHH-------hhhH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112222223333455544433333322 2221 23456677777766777777777766
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
|.-.. -+.|.. ..+|.++..+.-+ +-+.+++.--|
T Consensus 178 L~dn~-----ey~alN-Vy~ALCyyKlDYy--dvsqevl~vYL 212 (557)
T KOG3785|consen 178 LQDNP-----EYIALN-VYMALCYYKLDYY--DVSQEVLKVYL 212 (557)
T ss_pred HhcCh-----hhhhhH-HHHHHHHHhcchh--hhHHHHHHHHH
Confidence 54433 233333 3377777777776 66666555443
No 196
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.88 E-value=0.31 Score=58.29 Aligned_cols=127 Identities=13% Similarity=0.021 Sum_probs=96.9
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
..+++|.+|..+++..+.+-+ +....++..|-+.+..++++.|.+.+...+. ....++.++++++.
T Consensus 496 ~~~~~fs~~~~hle~sl~~np--------lq~~~wf~~G~~ALqlek~q~av~aF~rcvt------L~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINP--------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVT------LEPDNAEAWNNLST 561 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCc--------cchhHHHhccHHHHHHhhhHHHHHHHHHHhh------cCCCchhhhhhhhH
Confidence 457999999999999988632 3678899999999999999999999987765 35567889999999
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
.|++.|.-.+|+..+.+|+.-- .-+-..++-..+ +-..+|. |++|...+.+.+.+-....|
T Consensus 562 ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENyml-----vsvdvge--~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 562 AYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYML-----VSVDVGE--FEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhh-----hhhhccc--HHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999998765 222222332222 2234565 49999999988877554433
No 197
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.84 E-value=3.1 Score=55.02 Aligned_cols=179 Identities=17% Similarity=0.039 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH---hcC-C-----------------------
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK---KSG-N----------------------- 762 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~---~~G-~----------------------- 762 (924)
.-.+|.+++..|++.+|++.+.+++..++..+|..|.+.++=.++.+.. ..| +
T Consensus 245 ~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~~ 324 (1185)
T PF08626_consen 245 QKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSPR 324 (1185)
T ss_pred hhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCcc
Confidence 4457788899999999999999999999999999998876444432221 111 0
Q ss_pred -----------------------------hhhhHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHcC-----
Q 002424 763 -----------------------------AVLGIPYALASLSFCQLL-------NLDLLKASATLTLAELWLSFG----- 801 (924)
Q Consensus 763 -----------------------------~~~Al~~l~~AL~la~~~-------g~~~~~A~al~~La~l~~~lG----- 801 (924)
+..=...+.+++.+..+. .-+...+++.+.++.++..+.
T Consensus 325 ~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l 404 (1185)
T PF08626_consen 325 NSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNL 404 (1185)
T ss_pred cCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccch
Confidence 000012334556555544 578899999999999999888
Q ss_pred ---------------CChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 802 ---------------PNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 802 ---------------~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.. .++...+.++++.-+..-+..++.+.|..+|.+|-. .|-..+..-+++.++..+-
T Consensus 405 ~~iV~~~~~~~~~~~~~--~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~------lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 405 DHIVKRPLTPTPNISSR--SEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGS------LGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hhhhccccccccCCCCH--HHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHhc
Confidence 66 899999999999888777899999999999999887 4544444444443333221
Q ss_pred h-------------------------------------hc-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 867 V-------------------------------------LE-DHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 867 ~-------------------------------------l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
. .+ |+..+..++...-.+-.++||...+-+
T Consensus 477 ~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~ 544 (1185)
T PF08626_consen 477 PGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLR 544 (1185)
T ss_pred cccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 0 11 666677777777777777777665444
No 198
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.76 E-value=12 Score=44.95 Aligned_cols=242 Identities=14% Similarity=0.078 Sum_probs=152.1
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.+..||+...-...+.+|+...|-....++|-+-+. -....|-...+.+.+++-+.+++ +....-
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~----Fv~~~~lPets~rvyrRYLk~~P-----------~~~eey 175 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK----FVESHGLPETSIRVYRRYLKVAP-----------EAREEY 175 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH----HHHhCCChHHHHHHHHHHHhcCH-----------HHHHHH
Confidence 345677777777788888877664445568876642 33456666789999999988733 335567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 792 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 792 (924)
.+++...++.++|.+.+...+..-+-.+ -....-..+..++.+..+. +......=-.|+-..--..+........+.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~--p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN--PDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC--cchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 7889999999999999988775221111 0112233555666555443 333333222333222233345556667788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHH------HHhhhcCCCCC--------------------
Q 002424 793 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE------AKCLLSDPSFS-------------------- 846 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~L------Ar~~la~~~~~-------------------- 846 (924)
||+-|...|.. ++|+++++++|..+....|....-.+|... +++.+++...+
T Consensus 254 LAdYYIr~g~~--ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLF--EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhh--HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 99999999887 999999999999998887765544444322 23332311000
Q ss_pred ---------------------------CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHH
Q 002424 847 ---------------------------VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 894 (924)
Q Consensus 847 ---------------------------~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r 894 (924)
..|++++.+..+.+|..-..-...+..........|.+|...|+.+.+
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~a 406 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDA 406 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHH
Confidence 045566677777777765544444555566677788888888887664
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.70 E-value=0.15 Score=43.36 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 714 ARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
..+++..++|++|++.++.++... .....++..+|.++...|++..|+..+.+++++.-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467899999999999999998852 22577888999999999999999999999997764
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.69 E-value=14 Score=41.87 Aligned_cols=168 Identities=14% Similarity=-0.082 Sum_probs=108.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-|...+.-|+-.+|...-.++.....+-...-+..+.- ..++..|++++|+.-|+.++. ||+.+...+
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeA----Qaal~eG~~~~Ar~kfeAMl~--------dPEtRllGL 157 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEA----QAALLEGDYEDARKKFEAMLD--------DPETRLLGL 157 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHH----HHHHhcCchHHHHHHHHHHhc--------ChHHHHHhH
Confidence 35555667888888887776665543222222333433 577899999999999998876 776655544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
..+=.--.+.|+.+.|..+.+.+-..+. .-.|..++.+ +-....|+.+.|+.++.+....-.-..+.-.+.++.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap---~l~WA~~AtL---e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAP---QLPWAARATL---EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhcc---CCchHHHHHH---HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 4443334789999999999998876443 3345555433 234589999999999987766554444455555666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+.-+.....+... ...|++.-.+++-
T Consensus 232 LLtAkA~s~ldad-p~~Ar~~A~~a~K 257 (531)
T COG3898 232 LLTAKAMSLLDAD-PASARDDALEANK 257 (531)
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHhh
Confidence 6566655544442 2566665555443
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=93.65 E-value=2.6 Score=48.77 Aligned_cols=114 Identities=12% Similarity=-0.038 Sum_probs=80.4
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
..+-.+|.++.+++.++ ++.| +.++..+|.++.-.|+++.|...+++++.+. ...+.++...|.++
T Consensus 317 ~~~~~~a~~~A~rAvel----d~~D----a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~------Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 317 ELAAQKALELLDYVSDI----TTVD----GKILAIMGLITGLSGQAKVSHILFEQAKIHS------TDIASLYYYRALVH 382 (458)
T ss_pred hHHHHHHHHHHHHHHhc----CCCC----HHHHHHHHHHHHhhcchhhHHHHHHHHhhcC------CccHHHHHHHHHHH
Confidence 34455666666666654 4444 5778889999989999999999999998753 34488999999999
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-HHHHcCCChHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE-LWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~-l~~~lG~~~~~~Al~lLe 813 (924)
.-+|+.++|+.++.+|+.+. |...+.....+.- +|..-+- +.|+.++-
T Consensus 383 ~~~G~~~~a~~~i~~alrLs-----P~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 431 (458)
T PRK11906 383 FHNEKIEEARICIDKSLQLE-----PRRRKAVVIKECVDMYVPNPL---KNNIKLYY 431 (458)
T ss_pred HHcCCHHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHcCCch---hhhHHHHh
Confidence 99999999999999998875 2222222232333 5554443 56666653
No 202
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=93.47 E-value=7.7 Score=42.21 Aligned_cols=168 Identities=20% Similarity=0.053 Sum_probs=91.8
Q ss_pred HccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 637 VFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
.+++|++|.++|.+....+- ..|++..|-++..-+.+.....+ ++.. -+..-+++.+
T Consensus 2 ~~kky~eAidLL~~Ga~~ll--------------------~~~Q~~sg~DL~~lliev~~~~~--~~~~-~~~~~rl~~l 58 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILL--------------------KHGQYGSGADLALLLIEVYEKSE--DPVD-EESIARLIEL 58 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHH--------------------HTT-HHHHHHHHHHHHHHHHHTT-----S-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH--------------------HCCCcchHHHHHHHHHHHHHHcC--CCCC-HHHHHHHHHH
Confidence 57889999999886655444 34444444444443333333222 1111 1223455555
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 717 LLAANQFS-EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 717 l~~~G~~~-eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
....+.-+ +=.+.+++++......+...|..+.+..+|..+.+.|++..|..|+..+-.- .+.+...+-.
T Consensus 59 ~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~---------~~~~~~~ll~ 129 (260)
T PF04190_consen 59 ISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP---------SAFAYVMLLE 129 (260)
T ss_dssp HHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH---------HHHHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh---------hHHHHHHHHH
Confidence 55554333 3446677778777556677889999999999999999999999998654221 1122322444
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHh
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKC 838 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~ 838 (924)
.|...|.+ .++--.+-++.=..+..++....-.++..+-+-
T Consensus 130 ~~~~~~~~--~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 130 EWSTKGYP--SEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTSS----HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCC--cchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 55666766 555555555555556666766555555444443
No 203
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=4 Score=43.91 Aligned_cols=145 Identities=18% Similarity=0.105 Sum_probs=92.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
.--|..+...|+|++|+.++.....+ -...+++ ...+...+.+-|...++++..+.. | ...
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~V--qI~lk~~r~d~A~~~lk~mq~ide-----d---~tL 172 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL---------EAAALNV--QILLKMHRFDLAEKELKKMQQIDE-----D---ATL 172 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH---------HHHHHHH--HHHHHHHHHHHHHHHHHHHHccch-----H---HHH
Confidence 33455677889999999988742111 1112222 466778888999999998887521 3 233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
..+..+++-+..|- +.++.+.-++.+..+ .......++.+|.+|+..|++++|...+..||.- ..++ .
T Consensus 173 tQLA~awv~la~gg-----ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~d----p 241 (299)
T KOG3081|consen 173 TQLAQAWVKLATGG-----EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKD----P 241 (299)
T ss_pred HHHHHHHHHHhccc-----hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCC----H
Confidence 33444444455542 224445445555455 3445678899999999999999999999988764 4455 3
Q ss_pred HHHHHHHHHHHHcCCC
Q 002424 788 SATLTLAELWLSFGPN 803 (924)
Q Consensus 788 ~al~~La~l~~~lG~~ 803 (924)
.++.++--.-+.+|.+
T Consensus 242 etL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4444455455668887
No 204
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.34 E-value=8.2 Score=40.38 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
..|.++..+...|..+-..|=.+-|.--+.+++.+.|...+ ..+..+.-....|+|+.|.+.+.....+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~------vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE------VFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH------HHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 45677888888888887777777777777777777664333 1222224556789999999999888886
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH-HHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA-LASLSFCQ 778 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l-~~AL~la~ 778 (924)
||. --.+..++|..+..-|+|.-|.+-+.+--. .|+..-.|++.+- +--.-=+|..|...+ .++..+.+
T Consensus 129 --Dp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ-----~D~~DPfR~LWLY--l~E~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 129 --DPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ-----DDPNDPFRSLWLY--LNEQKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred --CCc-chHHHhccceeeeecCchHhhHHHHHHHHh-----cCCCChHHHHHHH--HHHhhCCHHHHHHHHHHHHHhccH
Confidence 332 346677888888888899888876654433 4454445543321 111334566775444 33333332
Q ss_pred HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 779 LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 779 ~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
..+-.. +... -+|.. .-..+.+++..-...... .+.-..+|+-||+-++. .|+.++|...
T Consensus 199 ----e~WG~~----iV~~--yLgki---S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~------~G~~~~A~~L 259 (297)
T COG4785 199 ----EQWGWN----IVEF--YLGKI---SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS------LGDLDEATAL 259 (297)
T ss_pred ----hhhhHH----HHHH--HHhhc---cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc------cccHHHHHHH
Confidence 111111 2222 25554 112233333333321111 12335679999999999 8999988888
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~ 891 (924)
++-|.+ -.+-.....+=++..++.+.....+.
T Consensus 260 fKLaia--nnVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 260 FKLAVA--NNVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHH--HhHHHHHHHHHHHHHHHHhccccchh
Confidence 776643 23334444555666677666555433
No 205
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.21 E-value=24 Score=42.39 Aligned_cols=186 Identities=12% Similarity=0.071 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HhhccCch-HHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhcc--
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEE-KFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSV-- 698 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~-~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~-- 698 (924)
......+.+|..+...|+.+.|..+++.|.. .|+...+- ..|+-.- +.-+++.+++.|..+.+++..+ +..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~wa----emElrh~~~~~Al~lm~~A~~v-P~~~~ 459 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWA----EMELRHENFEAALKLMRRATHV-PTNPE 459 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHH----HHHHhhhhHHHHHHHHHhhhcC-CCchh
Confidence 4457788999999999999999999998887 35554442 2454332 6778899999999999988764 222
Q ss_pred -CCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc-hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 699 -TGVD-MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ-VENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 699 -~~~D-~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~-~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+.-| .+-.-.-+.+--.++.-.-|++|++-.++..-....+.-|- -..-..-++-|..+....-++.++..+.+.+.
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 1011 11122233444455555556666665555443333322111 11233455566666566666777777777666
Q ss_pred HHH-HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Q 002424 776 FCQ-LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP 817 (924)
Q Consensus 776 la~-~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp 817 (924)
+.. -+-.+.+-.. |-..--+.|-.+.++|++++|+||.
T Consensus 540 LFk~p~v~diW~tY----Ltkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTY----LTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred cCCCccHHHHHHHH----HHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 542 1111111111 1111123455556788888888776
No 206
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=92.96 E-value=2.6 Score=52.41 Aligned_cols=176 Identities=13% Similarity=-0.059 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.+-..++..++..-++++|...+-.+-+..+......-|... + -.++..+++..|...++.++.. ++.
T Consensus 525 daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r-G---~yyLea~n~h~aV~~fQsALR~----dPk-- 594 (1238)
T KOG1127|consen 525 DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR-G---PYYLEAHNLHGAVCEFQSALRT----DPK-- 594 (1238)
T ss_pred hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc-c---ccccCccchhhHHHHHHHHhcC----Cch--
Confidence 34555667888899999999999977666554432222223321 1 4667899999999999998874 233
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH-HHhCC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC-QLLNL 782 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la-~~~g~ 782 (924)
-..++..+|+.+.+.|+|+.|++.++++..+ +.....+..-.|.+....|.+..|+..+..-+... ...-.
T Consensus 595 --D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~ 666 (1238)
T KOG1127|consen 595 --DYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTG 666 (1238)
T ss_pred --hHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3688999999999999999999999887542 22233445566777778899999987775433322 33334
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
+.+.++.+++++......|-. .+|.+.++..+..+
T Consensus 667 q~gLaE~~ir~akd~~~~gf~--~kavd~~eksie~f 701 (1238)
T KOG1127|consen 667 QNGLAESVIRDAKDSAITGFQ--KKAVDFFEKSIESF 701 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence 455667777788888788877 78888888877765
No 207
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.95 E-value=0.15 Score=42.60 Aligned_cols=55 Identities=22% Similarity=0.129 Sum_probs=44.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
++..|+|++|++.+++++... .....+...+|.++.+.|++++|...+.+.+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999998742 2246778899999999999999999988766554
No 208
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.94 E-value=1.5 Score=44.72 Aligned_cols=128 Identities=16% Similarity=0.070 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHH
Q 002424 728 AVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKM 807 (924)
Q Consensus 728 ~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~ 807 (924)
+.++.-+..+..........+++..+|..|.+.|+.+.|+..+.++...+.. ........+.+..+....|+. ..
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~--~~ 91 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDW--SH 91 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCH--HH
Confidence 3344444444433333444567888899999999999998888887665532 333444455566666778887 88
Q ss_pred HHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 808 ASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 808 Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
+...++++-..+...||...+.+.-..-|-.+++ .+++.+|...+-.+...|.
T Consensus 92 v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~------~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 92 VEKYIEKAESLIEKGGDWERRNRLKVYEGLANLA------QRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH------hchHHHHHHHHHccCcCCC
Confidence 8888888888888888877777766666666666 6777777777766665553
No 209
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.88 E-value=11 Score=45.17 Aligned_cols=173 Identities=9% Similarity=-0.003 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
.+.-.|..+.-.|+-++|......+...- ...+--|++ .+...+.--+|++|..+++.++.+-+ | -
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv----~gl~~R~dK~Y~eaiKcy~nAl~~~~-----d---N 108 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHV----LGLLQRSDKKYDEAIKCYRNALKIEK-----D---N 108 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHH----HHHHHhhhhhHHHHHHHHHHHHhcCC-----C---c
Confidence 34455666667788888888777655421 111112332 22466677888999999998888622 3 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH--HhCCcH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ--LLNLDL 784 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~--~~g~~~ 784 (924)
...+.-++.+...+|+|+...+.=.+.+++ ...+.--++..|..+.-.|++..|...+.+-...+. -....+
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~ 182 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDY 182 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHH
Confidence 566777888888888888888777666653 333344566777778888888888888776655553 223455
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
....+.+.-..++...|.. +.|++++...=+.+..
T Consensus 183 e~se~~Ly~n~i~~E~g~~--q~ale~L~~~e~~i~D 217 (700)
T KOG1156|consen 183 EHSELLLYQNQILIEAGSL--QKALEHLLDNEKQIVD 217 (700)
T ss_pred HHHHHHHHHHHHHHHcccH--HHHHHHHHhhhhHHHH
Confidence 6667777777777788887 8888888888777653
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.71 E-value=0.93 Score=48.81 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=68.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
-++..|+|.+|...|..-+.-++. -.-...+.+.+|+.+..+|+|.+|...+..+.. +.++.....++|+-+
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~-----s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKl 221 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPN-----STYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----CcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHH
Confidence 445667788887777777765542 223568888888888888888888888876655 556666677888888
Q ss_pred HHHHHhcCChhhhHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL 774 (924)
|.+..+.|+.+.|...+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 888888888888877776544
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.53 E-value=11 Score=37.15 Aligned_cols=174 Identities=22% Similarity=0.135 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHH-HHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHE-RSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~-~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
........++......+.|.++...+..+....+..... .... . . .+...|++..|...+.++... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~---~~~~~~~~~~~~a~~~~~~~~~~-~~~--- 162 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA--EALL-A---LGALYELGDYEEALELYEKALEL-DPE--- 162 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH--HHHH-H---HHHHHHcCCHHHHHHHHHHHHhc-CCC---
Confidence 335667778888888888999999998877654432111 1111 0 2 567899999999999998552 110
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
...........+..+...|++.+|+..+..++...... ...+...++..+...|.+..|...+..++.....
T Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-- 234 (291)
T COG0457 163 -LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-- 234 (291)
T ss_pred -ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--
Confidence 01245556666666888999999999999988753321 4667888888999999999999999888887754
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.......++..+...|.. .+|...+..++....
T Consensus 235 ----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 267 (291)
T COG0457 235 ----NAEALYNLALLLLELGRY--EEALEALEKALELDP 267 (291)
T ss_pred ----cHHHHhhHHHHHHHcCCH--HHHHHHHHHHHHhCc
Confidence 334455566666555544 778877777765543
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=92.47 E-value=0.98 Score=45.24 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=67.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
......|++++|+.+++-+..+ |+. .......+|.++..+|+|++|+..+..+..+. ..|++. ...
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~-------d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p----~f~ 110 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY-------DFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRP----VFF 110 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCc----cch
Confidence 3556788888888888877654 332 24567889999999999999999998776542 244444 556
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.|++++..|+...|+..+..++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 788899999999999888777774
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.36 E-value=0.31 Score=35.75 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
+.++|.++...|+|++|+++++++|.+.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 34455555555555555555555444433
No 214
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=5.8 Score=43.34 Aligned_cols=148 Identities=24% Similarity=0.196 Sum_probs=90.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 632 IQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 632 a~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
+.-....|++.+|...|..++...++..+-. +.++ +.++..|+.++|..++.++-.- +.......+.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~-----~~la-~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~ 207 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAK-----LLLA-ECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQ 207 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHH-----HHHH-HHHHHcCChHHHHHHHHhCccc-------chhhHHHHHH
Confidence 3445678999999999999988877543321 1122 6778899999999988876441 1111223223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 791 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 791 (924)
....++.+.....+.....+++-. + .....+-+.+|..+...|+++.|++++..-+..-+...++ .++.
T Consensus 208 a~i~ll~qaa~~~~~~~l~~~~aa------d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~----~~Rk 276 (304)
T COG3118 208 AQIELLEQAAATPEIQDLQRRLAA------D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG----EARK 276 (304)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHh------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc----HHHH
Confidence 334555555544444444433322 1 1123455678888999999999999997666654444333 3445
Q ss_pred HHHHHHHHcCCC
Q 002424 792 TLAELWLSFGPN 803 (924)
Q Consensus 792 ~La~l~~~lG~~ 803 (924)
.|-++...+|..
T Consensus 277 ~lle~f~~~g~~ 288 (304)
T COG3118 277 TLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHhcCCC
Confidence 566777778854
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.15 E-value=1.4 Score=47.43 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=80.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc---hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~---~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..+.|+-+...|+|.+|.+.|..=...||.... ..+|.- +..+.+|+|.+|...+.....-++. -.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLG------e~~y~qg~y~~Aa~~f~~~~k~~P~-----s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLG------ESLYAQGDYEDAAYIFARVVKDYPK-----SP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHH------HHHHhcccchHHHHHHHHHHHhCCC-----CC
Confidence 788999999999999999999988888886543 234543 4667999999999999998875443 22
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
-..++++-+|.++.++|+.++|...+++++..
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 25699999999999999999999999998874
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.06 E-value=0.87 Score=52.55 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA-SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A-~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.+.+++++|.++.+.|++++|+..+.+|+++.- ....+ .++.++|.+|..+|+. ++|++.+++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P----d~aeA~~A~yNLAcaya~LGr~--dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNP----NPDEAQAAYYNKACCHAYREEG--KKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 467899999999999999999999999999852 12222 5689999999999998 9999999999986
No 217
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.03 E-value=1.6 Score=44.88 Aligned_cols=98 Identities=17% Similarity=0.047 Sum_probs=68.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
-.=|.-+...|+|++|...+.+|++..|+... ..+.+.+..-....+.++.|..|..-+..+..|.+. .-.
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--------y~k 169 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--------YEK 169 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--------hHH
Confidence 34466677889999999999999988775544 222222221113456788888888888888877432 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
++.+++.++-....|++|++-+..+++
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666888888888888888888887776
No 218
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.93 E-value=0.22 Score=35.59 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQ 403 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe 403 (924)
.+..++|.+|...|++++|+..+++||++-.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 36789999999999999999999999998543
No 219
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.85 E-value=6.3 Score=46.74 Aligned_cols=167 Identities=15% Similarity=0.076 Sum_probs=109.7
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHHcccchhHH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL---------AANQFSEAAAVAHSLFCMCYKFNLQVENA 747 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~---------~~G~~~eAl~~l~~aL~~~~~~gd~~~~a 747 (924)
..||-+.+.+.+.+...- + +..+...++..++.... ..++...|.+.++.....+ + .-+
T Consensus 200 F~gdR~~GL~~L~~~~~~----~--~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-----P-~s~ 267 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKS----E--NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-----P-NSA 267 (468)
T ss_pred cCCcHHHHHHHHHHHhcc----C--CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-----C-CcH
Confidence 467777777777765441 1 33333333333333322 2335556666666665522 2 224
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
-.+...|.++...|+.+.|+..+.+|+.. +...+-........++-.+..+++. ++|...+..... .+.+-
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w--~~A~~~f~~L~~-----~s~WS 338 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDW--EEAAEYFLRLLK-----ESKWS 338 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchH--HHHHHHHHHHHh-----ccccH
Confidence 56888999999999999999999998843 3345556677778888888888887 999998887755 47778
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
+|...+..|-|+.. .|+...+...-++|.+.|+++..
T Consensus 339 ka~Y~Y~~a~c~~~------l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 339 KAFYAYLAAACLLM------LGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHHh------hccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999998 66664444444444444444433
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.83 E-value=2.9 Score=49.51 Aligned_cols=126 Identities=16% Similarity=0.006 Sum_probs=90.2
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.+..+.|.++|+...++|| ++.+|.+-.. +..+..|+.++|.+.++++...... -+.....+.+.++..+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP---~s~lfl~~~g---R~~~~~g~~~~Ai~~~~~a~~~q~~----~~Ql~~l~~~El~w~~ 315 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP---NSALFLFFEG---RLERLKGNLEEAIESFERAIESQSE----WKQLHHLCYFELAWCH 315 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC---CcHHHHHHHH---HHHHHhcCHHHHHHHHHHhccchhh----HHhHHHHHHHHHHHHH
Confidence 3457788888888888887 3444443322 6777899999999999976642121 2445677888899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh-------hhhHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA-------VLGIPYALASLSFCQ 778 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~-------~~Al~~l~~AL~la~ 778 (924)
+.+++|++|.+.+..+.. .....++--....|.++...|+. ++|...+.++-.+..
T Consensus 316 ~~~~~w~~A~~~f~~L~~-----~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLK-----ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHchHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999888776 33445666778888888888888 556666655555543
No 221
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.78 E-value=0.3 Score=36.35 Aligned_cols=33 Identities=27% Similarity=0.235 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTEAVCLSQQH 404 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe~ 404 (924)
.++.|||.+|...|++++|+..+++++.+.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 378899999999999999999999999998865
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=2.4 Score=46.30 Aligned_cols=98 Identities=17% Similarity=0.011 Sum_probs=71.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-H-HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-I-LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..-||..+..+|+++.|...+.+|.++-+ ++. + ..+...+ ...-..-.-.++..++++++.+ |+.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g---~n~~~~~g~aeaL--~~~a~~~~ta~a~~ll~~al~~-------D~~- 225 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAG---DNPEILLGLAEAL--YYQAGQQMTAKARALLRQALAL-------DPA- 225 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHhc-------CCc-
Confidence 45688999999999999999999997754 332 2 1222211 1122455677888999999885 332
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
...++..++.-.+..|+|.+|....+.++....
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 578888999999999999999999999888544
No 223
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=6.5 Score=42.54 Aligned_cols=202 Identities=11% Similarity=0.011 Sum_probs=144.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCC--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh--HHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVD--MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE--NAS 748 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D--~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~--~a~ 748 (924)
..+....++.+|...+.+++.- .+.-.| ..-+-.+...+..++...|++..--+.+...-+.-.....+.. .+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~k--g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGK--GVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcC--CCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 5677889999999999998873 222112 1112345678999999999998777766654332222111111 122
Q ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH
Q 002424 749 VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 828 (924)
Q Consensus 749 al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~ 828 (924)
.++.+ +-......+.-+..+..+++.|.+-.-..++-..-+-+..++..-|.. ..|+.++.-.+.-.....|...-
T Consensus 89 tLiek--f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Y--sdalalIn~ll~ElKk~DDK~~L 164 (421)
T COG5159 89 TLIEK--FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKY--SDALALINPLLHELKKYDDKINL 164 (421)
T ss_pred HHHHh--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHhhcCccce
Confidence 22222 223444556668888889999977777777777778889999999998 99999999999999999998888
Q ss_pred HHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 829 ARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 829 A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
-.++..-.+++.+ .....++..-|..|...+..+-+|.+..--+-++.-++|
T Consensus 165 i~vhllESKvyh~------irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlh 216 (421)
T COG5159 165 ITVHLLESKVYHE------IRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILH 216 (421)
T ss_pred eehhhhhHHHHHH------HHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhcccee
Confidence 8888888888888 677788888999999999999998876655555544443
No 224
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.52 E-value=32 Score=39.95 Aligned_cols=202 Identities=14% Similarity=0.054 Sum_probs=129.2
Q ss_pred cCHHHHHHHHHHHHHHhhccC--chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVS--KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~--~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
.+.+.+.++++.++.+.|.-. -+.+|.+.. .-.+++-+...|+.++..+...++. | ..--.-+++
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA----~feIRq~~l~~ARkiLG~AIG~cPK----~-----KlFk~YIel 446 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYA----QFEIRQLNLTGARKILGNAIGKCPK----D-----KLFKGYIEL 446 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHH----HHHHHHcccHHHHHHHHHHhccCCc----h-----hHHHHHHHH
Confidence 345566677777777655222 134677654 4557888999999999998886542 2 333445566
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 796 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 796 (924)
-+.+++++.-..+++.-++. ......++..-|++-...|+.++|...+.-|++--. ..+--++--+-+
T Consensus 447 ElqL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~------ldmpellwkaYI 514 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPA------LDMPELLWKAYI 514 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc------cccHHHHHHHhh
Confidence 67888999999999888763 455677889999999999999999888865543321 111112222222
Q ss_pred HHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC-----------ChHHHHHHHHHHHHHH
Q 002424 797 WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ-----------NPEAVLDPLRQASEEL 865 (924)
Q Consensus 797 ~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g-----------~~~~Al~~L~~A~~~f 865 (924)
-..+...++++|+.++++.|..-.. ..+....|+-..+.+. +..+ ....|...+++|...+
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h-------~kvWisFA~fe~s~~~-~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQH-------VKVWISFAKFEASASE-GQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhccc-------chHHHhHHHHhccccc-cccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 2233334569999999999876432 2255555544443111 1111 3457888888888888
Q ss_pred HhhcCHHH
Q 002424 866 QVLEDHEL 873 (924)
Q Consensus 866 ~~l~~~~~ 873 (924)
+..+....
T Consensus 587 k~~~~Kee 594 (677)
T KOG1915|consen 587 KESTPKEE 594 (677)
T ss_pred HhcCcHHH
Confidence 88877433
No 225
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.52 E-value=1.6 Score=42.69 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=63.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|.+.++.+..-++-- .-...+.+.++..+...|+|.+|+..+++-+++.-. ....-.++..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g-----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~vdYa~Y~ 89 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFG-----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNVDYAYYM 89 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC-----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCccHHHHH
Confidence 57789999999999999998865521 235688999999999999999999999988875322 2223447788
Q ss_pred HHHHHHhcCC
Q 002424 753 LAEIHKKSGN 762 (924)
Q Consensus 753 la~i~~~~G~ 762 (924)
+|.++.....
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8877776654
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.36 E-value=16 Score=35.97 Aligned_cols=208 Identities=22% Similarity=0.128 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.......+..+...|++..+...+........ ... ........ .......+++..+...+......... +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 128 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELEL-LPN--LAEALLNL-GLLLEALGKYEEALELLEKALALDPD----P-- 128 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh-ccc--hHHHHHHH-HHHHHHHhhHHHHHHHHHHHHcCCCC----c--
Confidence 45667777888889999999998887765300 001 01111111 14556778899999999988774221 1
Q ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 705 LKTEASLRHAR-TLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 705 ~~a~a~~~~a~-ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
......... ++...|+++.|...+.+++.. .. ...........+..+...|++..|+..+.+++......
T Consensus 129 --~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 200 (291)
T COG0457 129 --DLAEALLALGALYELGDYEEALELYEKALEL----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-- 200 (291)
T ss_pred --chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc--
Confidence 122233333 889999999999999998551 11 13445556666666888999999999999998887643
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
...+...++..+...|.. .+|...+..++..... .+..+..++..+.. .+....+...+.++.
T Consensus 201 ---~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 263 (291)
T COG0457 201 ---DAEALLNLGLLYLKLGKY--EEALEYYEKALELDPD------NAEALYNLALLLLE------LGRYEEALEALEKAL 263 (291)
T ss_pred ---chHHHHHhhHHHHHcccH--HHHHHHHHHHHhhCcc------cHHHHhhHHHHHHH------cCCHHHHHHHHHHHH
Confidence 445567788888888876 8999999888777654 33444455544443 567788888888887
Q ss_pred HHHHh
Q 002424 863 EELQV 867 (924)
Q Consensus 863 ~~f~~ 867 (924)
.....
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 76654
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.28 E-value=0.42 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQ 402 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~Aq 402 (924)
++.++|.+|...|++++|+.+|++|+.+.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 578899999999999999999999999987
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.08 E-value=12 Score=36.22 Aligned_cols=109 Identities=22% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch-----------H--H---HHHHHhhHHHHHHHcCCHHHHHHHHH
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS-----------R--I---LLLKLQLLHERSLHRGHLKLAQKVCD 689 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~-----------~--~---~~l~l~l~~~~al~~G~~~~A~~~l~ 689 (924)
..+++.|......|+...+...++++..++.+.--. + . ..-.+......+...|++.+|..++.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344556767777889999999999999887542110 0 0 01111111256677899999999988
Q ss_pred HHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-Hccc
Q 002424 690 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY-KFNL 742 (924)
Q Consensus 690 ~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~-~~gd 742 (924)
+++.+ ||. .-.+...+..++...|++.+|++.+++...... +.|.
T Consensus 87 ~~l~~-------dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 87 RALAL-------DPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHH-------STT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHhc-------CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 88886 433 235667778888899999999988888766544 3443
No 229
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.07 E-value=30 Score=41.86 Aligned_cols=245 Identities=17% Similarity=0.070 Sum_probs=132.4
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH 713 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~ 713 (924)
.-+.-|+|+||..++-.+..+ .++.......|||-...++++.- -++.|..+.-.+..++
T Consensus 743 i~~~~g~feeaek~yld~drr--------------DLAielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~i 802 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLYLDADRR--------------DLAIELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNI 802 (1189)
T ss_pred HhhhhcchhHhhhhhhccchh--------------hhhHHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHH
Confidence 334568999998887766643 11114556788888777665532 2334556677788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH-----HHHHcccchhH----HH-------HHHHHH-------------HHHHhcCChh
Q 002424 714 ARTLLAANQFSEAAAVAHSLFC-----MCYKFNLQVEN----AS-------VLLLLA-------------EIHKKSGNAV 764 (924)
Q Consensus 714 a~ll~~~G~~~eAl~~l~~aL~-----~~~~~gd~~~~----a~-------al~~la-------------~i~~~~G~~~ 764 (924)
|+....+..+++|.+.+...-. .|--.+...+. ++ .+-.+| ++|++.+.+.
T Consensus 803 g~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk 882 (1189)
T KOG2041|consen 803 GETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK 882 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH
Confidence 8888888888888887753310 11000111111 10 122223 4566777776
Q ss_pred hhHHHH------HHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC------------hHHHHHHHHHHHHhHHHhhCCHH
Q 002424 765 LGIPYA------LASLSFCQLLNLDLLKASATLTLAELWLSFGPN------------HAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 765 ~Al~~l------~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~------------~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
+|...+ -+|+++|+++.++-....+-..-+.+. +-|.. |++ |-+++-+..+.-.+-+.++
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll-~~~~~~eaIe~~Rka~~~~d-aarll~qmae~e~~K~~p~ 960 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL-ADANHMEAIEKDRKAGRHLD-AARLLSQMAEREQEKYVPY 960 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-hhcchHHHHHHhhhcccchh-HHHHHHHHhHHHhhccCCH
Confidence 665433 368888888887766555444333332 22222 233 3333444444445567777
Q ss_pred HHHHHHHHHHHhhhcCC--------CCCCCCChHHHHHHHHH-HHHHHHhhcC-HHHHHHHH--HHHHHHHHhcCCHHHH
Q 002424 827 LRARAFIAEAKCLLSDP--------SFSVSQNPEAVLDPLRQ-ASEELQVLED-HELAAEAF--YLIAIVFDKLGRLAER 894 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~--------~~~~~g~~~~Al~~L~~-A~~~f~~l~~-~~~~~~vl--~~lA~l~~~lGd~~~r 894 (924)
++-.-++.||-...... .....|..+.|.+.++. +++.-.++.+ ...-++++ ..+|.-+.-.|....+
T Consensus 961 lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~A 1040 (1189)
T KOG2041|consen 961 LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDA 1040 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHH
Confidence 77777777774444310 01124666677765553 3333333333 33334444 4566666666666665
Q ss_pred HHHHHH
Q 002424 895 EEAAAL 900 (924)
Q Consensus 895 ~~aa~~ 900 (924)
-..+-+
T Consensus 1041 l~Tal~ 1046 (1189)
T KOG2041|consen 1041 LQTALI 1046 (1189)
T ss_pred HHHHhh
Confidence 554433
No 230
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=90.98 E-value=2.6 Score=55.75 Aligned_cols=149 Identities=15% Similarity=-0.016 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC--------------------
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-------------------- 803 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-------------------- 803 (924)
+...|....+|..++.+|++..|+.++.+|+.+++..+|..+.|.|+=.++-+..-++..
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 455788889999999999999999999999999999999999999998887554422211
Q ss_pred -----------------------------------------hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 804 -----------------------------------------HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 804 -----------------------------------------~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
.+++|+.+|.++.....+.-.....+.+..-+++.+.+.
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 235566666666421111112222223333333333331
Q ss_pred C--------------C-CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 843 P--------------S-FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 843 ~--------------~-~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
. . .... ...++.+++.+|+..--..=....++.++..+|.+|..+|-...
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~-~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK 463 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNIS-SRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRK 463 (1185)
T ss_pred hcccchhhhhccccccccCCC-CHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHH
Confidence 1 0 0001 56688889999988665545688889999999999999997654
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=3.3 Score=45.18 Aligned_cols=141 Identities=21% Similarity=0.082 Sum_probs=87.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.-.+..|++.+|..++.+++...+ + ..++...++++++..|+.++|...+...=.. ........+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-------~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-----~~~~~~~~l~a 208 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-------E-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-----AQDKAAHGLQA 208 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-------c-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-----chhhHHHHHHH
Confidence 455789999999999999998633 2 2588899999999999999999999864221 11111111111
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
.-.++.+..........- .-+.. +..-..+.+.||..+...|+. ++|+++|-.+|+.=+...+-..+-+..
T Consensus 209 ~i~ll~qaa~~~~~~~l~----~~~aa---dPdd~~aa~~lA~~~~~~g~~--e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 209 QIELLEQAAATPEIQDLQ----RRLAA---DPDDVEAALALADQLHLVGRN--EAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred HHHHHHHHhcCCCHHHHH----HHHHh---CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 112222222222111111 11111 111124456699999999999 999999999988876666644444443
Q ss_pred HHH
Q 002424 833 IAE 835 (924)
Q Consensus 833 ~~L 835 (924)
..+
T Consensus 280 e~f 282 (304)
T COG3118 280 ELF 282 (304)
T ss_pred HHH
Confidence 333
No 232
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.66 E-value=24 Score=38.01 Aligned_cols=257 Identities=14% Similarity=0.009 Sum_probs=151.6
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhc-cCCCCcchHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASS-VTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~-~~~~D~~~~a~a~~~~a~ 715 (924)
..+.++|+.-++..++.-++-+. |..+ +-......++.|+|.+-.+.+.+++....+ +..+- .-.+.+..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKge---WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy---SEKsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGE---WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY---SEKSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHH
Confidence 34688888888877766443333 4332 222226888999999999999999986432 22111 1112222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH--------HhCCcHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ--------LLNLDLLKA 787 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~--------~~g~~~~~A 787 (924)
+-....+.+--.+.++..+...+.....+.-+..-.-+|.+|...|++.+-...+.+--.-|+ +-|-+.++.
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence 222222333233444444443333333333345566678888888888665544444333332 223344444
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.|+- -.++-..-.. .+-..+++++|.+--....+..-+...-+=|++|++ .|.+++|---+=+|+.-|..
T Consensus 194 YAlE--IQmYT~qKnN--KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr------eg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 194 YALE--IQMYTEQKNN--KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR------EGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred HhhH--hhhhhhhccc--HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc------cchHHHHHhHHHHHHhcccc
Confidence 4433 2233344444 556677888888877778888888887777899999 89999998888889999988
Q ss_pred hcCHHH-HHHHHHHHHHHHHhcCC----HHHHH-----HHHHHHHHHHHhhhc
Q 002424 868 LEDHEL-AAEAFYLIAIVFDKLGR----LAERE-----EAAALFKEYVLALEN 910 (924)
Q Consensus 868 l~~~~~-~~~vl~~lA~l~~~lGd----~~~r~-----~aa~~f~~l~~~~~~ 910 (924)
-|.|++ .|--+..+|...-..|- ..++. .-.-....+..+|||
T Consensus 264 sGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~ 316 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQN 316 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhc
Confidence 887655 45555556665555552 22211 133446677777777
No 233
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.65 E-value=3.9 Score=52.65 Aligned_cols=136 Identities=11% Similarity=0.079 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++-.|.-.|...+.|++|.++|+...+.|. .....|.... ...+++.+-.+|+.++.+++.-.+...
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~----~fLl~~ne~~aa~~lL~rAL~~lPk~e----- 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYA----DFLLRQNEAEAARELLKRALKSLPKQE----- 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHH----HHHhcccHHHHHHHHHHHHHhhcchhh-----
Confidence 35667788888899999999999999999998 3445677654 566788888999999999988544322
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
..+...--|.+-...||.+.+...++..+..+ .-+.++|+....--.+.|+..-.+.+++|++.+..
T Consensus 1599 -Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1599 -HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred -hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 56777788899999999999999999888743 22356677666777789999999999998887754
No 234
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.40 E-value=5.3 Score=42.83 Aligned_cols=134 Identities=13% Similarity=-0.016 Sum_probs=105.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.-....+..+... |++........++.+-+..||-..|-..+++...............-++..
T Consensus 185 ~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 185 NCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4667789999999988888773 666677888899999999999999999999887777777777888999999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
++.+|..+.++..|...+.+++.. .++. +.+.++-|.+++-+|+. ..|++.+++++|++-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~----D~~~--~~a~NnKALcllYlg~l--~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRM----DPRN--AVANNNKALCLLYLGKL--KDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhcccc----CCCc--hhhhchHHHHHHHHHHH--HHHHHHHHHHhccCCc
Confidence 999999999999887777655433 2222 23344455555568998 9999999999988643
No 235
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=10 Score=43.06 Aligned_cols=177 Identities=15% Similarity=0.052 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc----hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ----VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~----~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
.+...+.....++...+|.+|.+..+..+.-.. .+++ ...++.+.-++.+|-..|+...-...+..-+..|.-.+
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 444445555555677899999998887765221 1222 33467788888899999996655666666677777777
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
+....|...+.|-..++.-+.. ++|-.+.-..- --. ..+-.+.|+.++.+|+.... ++++..|.+++-+|
T Consensus 204 d~e~qavLiN~LLr~yL~n~ly--dqa~~lvsK~~-~pe-~~snne~ARY~yY~GrIkai------qldYssA~~~~~qa 273 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLY--DQADKLVSKSV-YPE-AASNNEWARYLYYLGRIKAI------QLDYSSALEYFLQA 273 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHH--HHHHHHhhccc-Ccc-ccccHHHHHHHHHHhhHHHh------hcchhHHHHHHHHH
Confidence 8889998888888888655554 88888765442 111 22333899999999999998 89999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
..-.-+.....-...+.-.+-.+-.-+|+.++
T Consensus 274 ~rkapq~~alGf~q~v~k~~ivv~ll~geiPe 305 (493)
T KOG2581|consen 274 LRKAPQHAALGFRQQVNKLMIVVELLLGEIPE 305 (493)
T ss_pred HHhCcchhhhhHHHHHHHHHHHHHHHcCCCcc
Confidence 88766544555555555555666667777665
No 236
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.09 E-value=28 Score=40.55 Aligned_cols=174 Identities=16% Similarity=-0.015 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhH--HHHHHHHHHHHHhcCCh-------hhhHHHHHHHHHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN--ASVLLLLAEIHKKSGNA-------VLGIPYALASLSFCQL 779 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~--a~al~~la~i~~~~G~~-------~~Al~~l~~AL~la~~ 779 (924)
...++|++..-.|||+-|...++.+..++. .|..+. +-++=..|....-.|.. .....+++.|......
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~--~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFK--NDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHh--hchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 345788999999999999999998888765 334333 33444444444444433 2445666666666655
Q ss_pred -----hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH-hhCCHHHHHHHHHHHHHhh--hcCCCC-CCCCC
Q 002424 780 -----LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL-GHGGLELRARAFIAEAKCL--LSDPSF-SVSQN 850 (924)
Q Consensus 780 -----~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl-~~gd~~~~A~a~~~LAr~~--la~~~~-~~~g~ 850 (924)
...+....++.+..++++..+|.. .+|...+-+....++ ..-.....|..+-.+|.|+ +....+ ....+
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~--~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r 365 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGY--WEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR 365 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh
Confidence 345568888999999999999986 666665555555543 1111112666777778888 442111 11223
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 851 PEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 851 ~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
..++.-++--|-..|.+.+-+....+++..--.+|.
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 455555555566666666666665555555555544
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.08 E-value=6 Score=38.49 Aligned_cols=131 Identities=21% Similarity=0.109 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..++.....+......|+...+.+.+++++.+++ |+....... .. .+... ......
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~--G~~l~~~~~-----------~~---W~~~~--------r~~l~~ 59 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYR--GDFLPDLDD-----------EE---WVEPE--------RERLRE 59 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT----SSTTGGGTT-----------ST---THHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC--CCCCCCCCc-----------cH---HHHHH--------HHHHHH
Confidence 4566677778888888999999999998888766 332221110 00 01000 011111
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
....+...++..+...|++ ++|+.+++.++.. ++.. -.++..|-+++.+ .|+...|+..+++....
T Consensus 60 ~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~l~~-----dP~~-E~~~~~lm~~~~~------~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDY--EEALRLLQRALAL-----DPYD-EEAYRLLMRALAA------QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHH-----STT--HHHHHHHHHHHHH------TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCH--HHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHH------CcCHHHHHHHHHHHHHH
Confidence 2224456688888899998 9999998888765 3332 3356667788998 89999999999999887
Q ss_pred HH-hhcCHHH
Q 002424 865 LQ-VLEDHEL 873 (924)
Q Consensus 865 f~-~l~~~~~ 873 (924)
+. .+|....
T Consensus 126 l~~elg~~Ps 135 (146)
T PF03704_consen 126 LREELGIEPS 135 (146)
T ss_dssp HHHHHS----
T ss_pred HHHHhCcCcC
Confidence 76 4555433
No 238
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.85 E-value=0.66 Score=53.18 Aligned_cols=128 Identities=17% Similarity=0.048 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh---HHHHHHHHHHHHHhcCChhhhHHHHHHHHH-HHHHhC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE---NASVLLLLAEIHKKSGNAVLGIPYALASLS-FCQLLN 781 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~---~a~al~~la~i~~~~G~~~~Al~~l~~AL~-la~~~g 781 (924)
...++..++......|+|..|++.+...--.+...|...+ ..-+++++|.||.+.|.|..+.-++..||. .|.+..
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 5688889999999999999999998754322222233222 233678999999999999999999999995 554332
Q ss_pred Cc-----------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 782 LD-----------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 782 ~~-----------~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.. --..+++.+.|-.++++|+| -.|.+++..+.-......-.|+ .||.|.++
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP--l~AfqCf~~av~vfh~nPrlWL------RlAEcCim 381 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP--LLAFQCFQKAVHVFHRNPRLWL------RLAECCIM 381 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCc--HHHHHHHHHHHHHHhcCcHHHH------HHHHHHHH
Confidence 21 23457788999999999999 9999999999888877665444 45665554
No 239
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.82 E-value=29 Score=40.32 Aligned_cols=200 Identities=14% Similarity=-0.008 Sum_probs=133.0
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHHH----HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRILL----LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~----l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
....|+-+.-.++++.|....|.....+.|. +-++.+...-+...|...+++.++.++.+.+.- ...-+..+
T Consensus 332 ~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk----kFtFaKiW 407 (677)
T KOG1915|consen 332 EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK----KFTFAKIW 407 (677)
T ss_pred HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc----cchHHHHH
Confidence 3445888899999999998877765544442 233322245567889999999999999975532 23356788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
+.-|...+++-+...|...+..++-.|-....-.+-+ ++-.+.+++++..-++.+=|... ..-..+.
T Consensus 408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI-------elElqL~efDRcRkLYEkfle~~------Pe~c~~W 474 (677)
T KOG1915|consen 408 LMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI-------ELELQLREFDRCRKLYEKFLEFS------PENCYAW 474 (677)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH-------HHHHHHhhHHHHHHHHHHHHhcC------hHhhHHH
Confidence 8889999999999999999999887665332222222 23346677788877777665543 3445677
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
...|++-..+|+. ++|+.+++-++.+-. ..-+.+--.+|... -.+ .|..++|...+++-++
T Consensus 475 ~kyaElE~~Lgdt--dRaRaifelAi~qp~-ldmpellwkaYIdF---Ei~------~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 475 SKYAELETSLGDT--DRARAIFELAISQPA-LDMPELLWKAYIDF---EIE------EGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHhhhH--HHHHHHHHHHhcCcc-cccHHHHHHHhhhh---hhh------cchHHHHHHHHHHHHH
Confidence 7889999999999 999999998876532 22333333333311 111 5666666666665443
No 240
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.76 E-value=0.84 Score=35.35 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHH
Q 002424 790 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837 (924)
Q Consensus 790 l~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr 837 (924)
.+.||.+|..+|+. +.|+.+|++++ ..|+...+..|..+|.+
T Consensus 2 kLdLA~ayie~Gd~--e~Ar~lL~evl----~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 2 KLDLARAYIEMGDL--EGARELLEEVI----EEGDEAQRQEARALLAQ 43 (44)
T ss_pred chHHHHHHHHcCCh--HHHHHHHHHHH----HcCCHHHHHHHHHHHhc
Confidence 46799999999999 99999999997 47899999998877764
No 241
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.76 E-value=6.2 Score=40.64 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+.+.++......|++++|...+++++.. ..|.....-+-+.+|.|....|.++.|+..+. ....+.+.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~~~~w~ 158 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIKEESWA 158 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccccccHH
Confidence 345567788888999999999999988862 35666667788899999999999998887764 33334445
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 787 ASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 787 A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
++.-..-|++++..|+. .+|+.-++.++..-
T Consensus 159 ~~~~elrGDill~kg~k--~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDK--QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCch--HHHHHHHHHHHHcc
Confidence 55556689999999999 99999999998764
No 242
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.72 E-value=0.7 Score=34.27 Aligned_cols=33 Identities=27% Similarity=0.110 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~ 657 (924)
+.++.+||..+..+|+|++|..+++++.+....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 567899999999999999999999998887554
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.72 E-value=35 Score=37.38 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHhhccC---c-h-H---HHHHHHhhHHHHHHHcCCHHHHHHH
Q 002424 617 DGSSLSDAALAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVS---K-S-R---ILLLKLQLLHERSLHRGHLKLAQKV 687 (924)
Q Consensus 617 ~~~~~d~~~~a~~~La~~~a~~G-~y~eA~~~L~~a~~~f~~~~---~-~-~---~~~l~l~l~~~~al~~G~~~~A~~~ 687 (924)
+....+..+..+.+.|..+...+ +|++|...|++|.+.+...+ . + . .....++.....++.-+.++....+
T Consensus 27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka 106 (278)
T PF08631_consen 27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKA 106 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 44456788899999999999999 99999999999999874411 1 1 1 1111122222556666666555443
Q ss_pred HHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 688 CDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 688 l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..-+..+-.+.+ + .+........++...++.+++.+.+.+++..
T Consensus 107 ~~~l~~l~~e~~--~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 107 LNALRLLESEYG--N---KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHhCC--C---CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 333222212222 3 4566666777777799999999999988873
No 244
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.60 E-value=1.6 Score=44.77 Aligned_cols=95 Identities=14% Similarity=0.030 Sum_probs=79.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.-.+..|+|.+|..-|..++.+.+.... ..+..++.+.|-.++.++.++.|++-+..++++ +. ...+++..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----~p--ty~kAl~R 173 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIEL----NP--TYEKALER 173 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----Cc--hhHHHHHH
Confidence 3567899999999999999998776552 457788889999999999999999999999875 22 23567778
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+|.+|-+...|+.|+..+.+-+.+
T Consensus 174 RAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 174 RAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999999877665
No 245
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=89.53 E-value=19 Score=34.14 Aligned_cols=114 Identities=17% Similarity=0.056 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch----h--HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV----E--NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~----~--~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+...+..++-.+.-|-|++|..-+..+++..+...... . -+-++-.++..+...|+|+.++.-..+||....+.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 44455567777889999999999999999988654331 1 24467788999999999999999999999988665
Q ss_pred CCcH-----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 781 NLDL-----LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 781 g~~~-----~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
|.-. +-..+.+.-|..+..+|+. ++|+.-++.+-+++-+.
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~--~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRK--EEALKEFRMAGEMIAER 133 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHH-
T ss_pred cccccccchhHHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHH
Confidence 5421 1223445567777789999 99999999888887543
No 246
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.45 E-value=11 Score=41.04 Aligned_cols=145 Identities=14% Similarity=0.027 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 724 SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
++-++-+++.++..++.........++.++|+-|.+.++-+.|+..+.+.++-+-.+|...-......+||.++ |+.
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y---~d~ 168 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIY---GDR 168 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhh---ccH
Confidence 34455555555555555545667889999999999999999999999999999999998877777777788775 444
Q ss_pred hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 002424 804 HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFY 879 (924)
Q Consensus 804 ~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~ 879 (924)
.-..+.+|.+-|++...||-+.+-+.-...|--.++ ...+.+|...|-..+..|++.+-..-..-+.|
T Consensus 169 --~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~------~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrY 236 (412)
T COG5187 169 --KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMM------RRNFKEAAILLSDILPTFESSELISYSRAVRY 236 (412)
T ss_pred --HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHH------HHhhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 445567777778888888877666654444433333 34556666677777777776665554444444
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=89.37 E-value=11 Score=43.80 Aligned_cols=111 Identities=8% Similarity=0.061 Sum_probs=73.4
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHc---cC------HHHHHHHHHHHHHHhhccCchH-HHHHHHhhHHHHHHHcCC
Q 002424 611 YATCFSDGSSLSDAALAHVKLIQHLAVF---KG------YKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRGH 680 (924)
Q Consensus 611 ~~~~~~~~~~~d~~~~a~~~La~~~a~~---G~------y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G~ 680 (924)
+.+|.....-.-+.+.++|-+|.+++.. |- -.+|.++.+.|.++=+ .|.. .+.+. ......|+
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~--~Da~a~~~~g-----~~~~~~~~ 353 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT--VDGKILAIMG-----LITGLSGQ 353 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC--CCHHHHHHHH-----HHHHhhcc
Confidence 4455533322235577888888777643 22 2334444444443311 1221 23333 45567888
Q ss_pred HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 681 LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 681 ~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
++.|...++++..+.+ + .+.+++..|.++...|+.++|.+.+++++++
T Consensus 354 ~~~a~~~f~rA~~L~P-----n---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 354 AKVSHILFEQAKIHST-----D---IASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hhhHHHHHHHHhhcCC-----c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999999743 2 6788999999999999999999999998874
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.99 E-value=0.94 Score=32.03 Aligned_cols=31 Identities=26% Similarity=0.045 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
.++..+|.++...|+|++|...++++.++.|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5678899999999999999999999988766
No 249
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.89 E-value=11 Score=45.29 Aligned_cols=222 Identities=17% Similarity=0.120 Sum_probs=115.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+--+|.+++..|+|+-|.+++.++. +|. ..+ ..+-..|+|..|..+...... |+...
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-~~~-----------dai--~my~k~~kw~da~kla~e~~~---------~e~t~ 824 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-LFK-----------DAI--DMYGKAGKWEDAFKLAEECHG---------PEATI 824 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-hhH-----------HHH--HHHhccccHHHHHHHHHHhcC---------chhHH
Confidence 4556777777777777777666543 111 011 233456666666655444321 22244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHcccchhHH------------HHHHHHHHHHHhcCChhhhHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVA------HSLFCMCYKFNLQVENA------------SVLLLLAEIHKKSGNAVLGIPY 769 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l------~~aL~~~~~~gd~~~~a------------~al~~la~i~~~~G~~~~Al~~ 769 (924)
......++-+-..|+|.+|.+++ ..++..+.+.|.....+ ......|.-+...|+...|..+
T Consensus 825 ~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 825 SLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred HHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 44455555556666666665544 12233333222221111 1233444444555555555555
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCC---
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS--- 846 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~--- 846 (924)
+.+|-+.-.. ..+ -+|-.+++.+..+...-|.....-++.++-|+..-.++.-+
T Consensus 905 flea~d~kaa--------------------vnm---yk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavklln 961 (1636)
T KOG3616|consen 905 FLEAGDFKAA--------------------VNM---YKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLN 961 (1636)
T ss_pred HHhhhhHHHH--------------------HHH---hhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHH
Confidence 5444332110 011 23445566666666666666666666666665544432111
Q ss_pred CCCChHHHHHH------HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 847 VSQNPEAVLDP------LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 847 ~~g~~~~Al~~------L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
..|-++.++++ ++-|++.. +++...+..+|...+|+.....|..+++-+
T Consensus 962 k~gll~~~id~a~d~~afd~afdla-ri~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 962 KHGLLEAAIDFAADNCAFDFAFDLA-RIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred hhhhHHHHhhhhhcccchhhHHHHH-HHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 02334444443 33344443 566777778889999999999999888644
No 250
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.32 E-value=42 Score=39.68 Aligned_cols=250 Identities=17% Similarity=0.097 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHH-hhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKL-QLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l-~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
.-...-+..+...|+.+.|+...+...+ .+. .++..++. -.+ ......-+|..|-..+..+.... | .
T Consensus 268 ~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~--kQ~~~l~~fE~a-w~~v~~~~~~~aad~~~~L~des------d-W 335 (546)
T KOG3783|consen 268 LWLLMEARILSIKGNSEAAIDMESLSIP--IRM--KQVKSLMVFERA-WLSVGQHQYSRAADSFDLLRDES------D-W 335 (546)
T ss_pred cHHHHHHHHHHHcccHHHHHHHHHhccc--HHH--HHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHhhh------h-h
Confidence 4456667778888995555555443332 111 11222221 111 34456778888888888887742 2 2
Q ss_pred hHHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 705 LKTEASLRHARTL--------LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 705 ~~a~a~~~~a~ll--------~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
..+...+..|-++ ...|+-+.|-...+......+..|-....=+....+++-+...+. .+..
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~--~~~~-------- 405 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP--LNAS-------- 405 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--cccc--------
Confidence 2333344443332 223455555554444444333322111111223333333333332 0100
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHH
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ-ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVL 855 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~-aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al 855 (924)
-.-++=...++.+|......-..+..++..+ ..| .+.|..+.+.-++++|-|+.. .|+...|.
T Consensus 406 -------~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~---~~~d~Dd~~lk~lL~g~~lR~------Lg~~~~a~ 469 (546)
T KOG3783|consen 406 -------ILLASPYYELAYFWNGFSRMSKNELEKMRAELENP---KIDDSDDEGLKYLLKGVILRN------LGDSEVAP 469 (546)
T ss_pred -------ccccchHHHHHHHHhhcccCChhhHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHH------cCCHHHHH
Confidence 0111112346666654333211333321111 112 223778899999999999999 89999999
Q ss_pred HHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhhhccCC
Q 002424 856 DPLRQASEE-LQVLEDHELAAEAFYLIAIVFDKLGR-LAEREEAAALFKEYVLALENENR 913 (924)
Q Consensus 856 ~~L~~A~~~-f~~l~~~~~~~~vl~~lA~l~~~lGd-~~~r~~aa~~f~~l~~~~~~~~~ 913 (924)
.++..+.+. ...-++++-.--++|.+|.++...|- ..+++......+.+..-|+=||+
T Consensus 470 ~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenR 529 (546)
T KOG3783|consen 470 KCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENR 529 (546)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhH
Confidence 998877754 55778899999999999999999999 88888888888888877766654
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.11 E-value=23 Score=40.49 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=101.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA---ANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~---~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
.-++.-.+|+.-..+++.+..+ +.. |......+....|..+.+ .|+.++|++.+..++. .......++
T Consensus 149 lSyRdiqdydamI~Lve~l~~~-p~~---~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-----~~~~~~~d~ 219 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEAL-PTC---DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-----SDENPDPDT 219 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhcc-Ccc---chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-----ccCCCChHH
Confidence 3556678899999988888765 211 222356778888999999 9999999999998766 344455678
Q ss_pred HHHHHHHHH----hcC-----ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH----
Q 002424 750 LLLLAEIHK----KSG-----NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL---- 816 (924)
Q Consensus 750 l~~la~i~~----~~G-----~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL---- 816 (924)
+.+.|.||- .++ ...+|+..+.++-.+- ..+ ..-.+++.++...|.. .+...-++++-
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~----~~~---Y~GIN~AtLL~~~g~~--~~~~~el~~i~~~l~ 290 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE----PDY---YSGINAATLLMLAGHD--FETSEELRKIGVKLS 290 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC----ccc---cchHHHHHHHHHcCCc--ccchHHHHHHHHHHH
Confidence 888888883 221 2344555555554443 122 3334556666667765 33332233332
Q ss_pred hHHHhhCCHHHHHHH--HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 817 PLILGHGGLELRARA--FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 817 p~vl~~gd~~~~A~a--~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
..+.+.|+....... +-+++.+.+. .|++++|+.++++++..
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL------~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVL------AGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHH------cCCHHHHHHHHHHHhhc
Confidence 222223322222211 2234566666 79999999999998765
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.98 E-value=1.2 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.049 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++.++|..+..+|+|++|+..+++++++-|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 46789999999999999999999999988755
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.91 E-value=28 Score=40.86 Aligned_cols=65 Identities=15% Similarity=-0.002 Sum_probs=47.0
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA 770 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l 770 (924)
|......+..+++.++.+.|+..||++++.+++++.. ......+.-++-++++..+++..+...+
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444578889999999999999999999999987532 2233445666666777777776665443
No 254
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.81 E-value=6.1 Score=42.61 Aligned_cols=89 Identities=11% Similarity=-0.065 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 002424 722 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 801 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG 801 (924)
.....+++++.+...+...+..+....+...+|.-|...|++++|+.++..+....++-|=..+...++..|..+...+|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34456788888888888888888999999999999999999999999999998888999999999999999999999999
Q ss_pred CChHHHHHHHH
Q 002424 802 PNHAKMASNLI 812 (924)
Q Consensus 802 ~~~~~~Al~lL 812 (924)
+. +..+...
T Consensus 233 ~~--~~~l~~~ 241 (247)
T PF11817_consen 233 DV--EDYLTTS 241 (247)
T ss_pred CH--HHHHHHH
Confidence 87 6555543
No 255
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.29 E-value=7.2 Score=50.24 Aligned_cols=186 Identities=15% Similarity=-0.041 Sum_probs=134.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--FNLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--~gd~~~~a~al 750 (924)
...+..|.|.+|.+ +.+.+.++..+-..-..-.+.++..++.++.+.|++++|+..-..+...+.+ .-|....+...
T Consensus 940 q~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 45677888888888 6666655442211111115788889999999999999999998887665554 23455668888
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHH-HhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC--HH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQ-LLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LE 826 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~-~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd--~~ 826 (924)
..++.......+...|+..+.+++.+-- ..|- ...-+..-.++..+.+.++.. +.|+++++.++........ ..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~--d~al~~le~A~a~~~~v~g~~~l 1096 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA--DTALRYLESALAKNKKVLGPKEL 1096 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH--HHHHHHHHHHHHHHhhhcCccch
Confidence 8999888888899999988888877652 2222 334455556777777666665 9999999999997755533 23
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.-|..+..+|+.+-+ .++...|+.+-+.++.+|..
T Consensus 1097 ~~~~~~~~~a~l~~s------~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1097 ETALSYHALARLFES------MKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred hhhhHHHHHHHHHhh------hHHHHHHHHHHhhHHHHHHH
Confidence 345556677888877 78888999999999998874
No 256
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.28 E-value=4 Score=43.08 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-------ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-------NLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~-------gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
++.-.+...+++|+++...|+.+.....++.++..+.+. .....+..++.++|+++.+.|++++|...+.+.+
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444578889999999999999888888888887655531 1234568899999999999999999999887766
Q ss_pred HHHH
Q 002424 775 SFCQ 778 (924)
Q Consensus 775 ~la~ 778 (924)
..-.
T Consensus 193 ~~~~ 196 (214)
T PF09986_consen 193 GSKK 196 (214)
T ss_pred cCCC
Confidence 5543
No 257
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.00 E-value=5.4 Score=34.94 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
+.-....|.-+....+..+|+...+.++.. ..++...++++-.+..+|...|.+...+.+..+-+.+|++..++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k---~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEK---ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 344455566667888999999999999873 34567889999999999999999999999999999999887654
No 258
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.83 E-value=10 Score=40.72 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
.+.+++|.+++..|+...|++.+++++.
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555555555554444443
No 259
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.82 E-value=6.7 Score=39.23 Aligned_cols=89 Identities=13% Similarity=-0.056 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
++....++..+...-...++.+++..+|....-.-|..... .+. ...+++.+|+|.+|..+++.+..
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~--~~~----~~~l~i~r~~w~dA~rlLr~l~~------- 72 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL--DLF----DGWLHIVRGDWDDALRLLRELEE------- 72 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH--HHH----HHHHHHHhCCHHHHHHHHHHHhc-------
Confidence 34556677778888888899999998888665544432221 111 12688899999999999999865
Q ss_pred CCcchHHHHHHHHHHHHHHcCCH
Q 002424 701 VDMDLKTEASLRHARTLLAANQF 723 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~ 723 (924)
++.....+...++.++..+||.
T Consensus 73 -~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 73 -RAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred -cCCCChHHHHHHHHHHHHcCCh
Confidence 3333567777788888777764
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.76 E-value=1.3 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.++..+|.++...|++.+|+.++.+|+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34555666666666666666666666554
No 261
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.48 E-value=81 Score=37.79 Aligned_cols=274 Identities=13% Similarity=0.039 Sum_probs=155.7
Q ss_pred hhhhhHHHHHHHHHHhhCchHHHHh-HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHHhhcc
Q 002424 582 QLVGSSYLLRATAWEAYGSAPLTRV-NTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKE--AFSALKIAEEKFLSV 658 (924)
Q Consensus 582 ~l~g~~~~l~a~~W~~~G~~~ls~~-~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~e--A~~~L~~a~~~f~~~ 658 (924)
.-+......-+-+....|.+.=+.- +..+.-....|.. -.+++.+||...-- ...|.+ ++...+.-...+.+.
T Consensus 221 ~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~---~~Av~~NNLva~~~-d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 221 EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP---SLAVAVNNLVALSK-DQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch---HHHHHhcchhhhcc-ccccCchHHHHHHHHHHHHhHHH
Confidence 3445556666777788888765544 6665555555554 45666666654322 222322 111111111111111
Q ss_pred Cch----HHH-HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 659 SKS----RIL-LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 659 ~~~----~~~-~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
... ..| .+..+.. ...++.+.-+.++++..++-.- -|.-.+.++...+...... .+..|.+.+.+.
T Consensus 297 ~l~~Ls~~qk~~i~~N~~-lL~l~tnk~~q~r~~~a~lp~~-------~p~~~~~~ll~~~t~~~~~-~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNA-LLALFTNKMDQVRELSASLPGM-------SPESLFPILLQEATKVREK-KHKKAIELLLQF 367 (652)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHhCCcc-------CchHHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 111 111 1222222 5667788888887777665442 2333455555544444444 677788877766
Q ss_pred HHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 734 FCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 734 L~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.. +.+.....+++.+++++...|++..|+..+.-.+ .++.+ ..-...-.+...+-.++...+.. .-|..+
T Consensus 368 ~~-----~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~-~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~--~~a~~v 439 (652)
T KOG2376|consen 368 AD-----GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL-ESWKSSILEAKHLPGTVGAIVALYYKIKDN--DSASAV 439 (652)
T ss_pred hc-----cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhhhhhhhhccChhHHHHHHHHHHhccCC--ccHHHH
Confidence 54 7778889999999999999999999998887433 22211 11111112233355566778887 789999
Q ss_pred HHHHHhHHHhhCCHH-HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 002424 812 IQQALPLILGHGGLE-LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 812 Le~aLp~vl~~gd~~-~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l 888 (924)
+.+++-.++..-+.. ..-..+..+|...+. .|.-.+|...|++-...+ ..-.+++..+-.+|..+
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr------~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLR------HGNEEEASSLLEELVKFN------PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHh------cCchHHHHHHHHHHHHhC------CchHHHHHHHHHHHHhc
Confidence 999999887664433 222233344555555 577888888888766544 23344555555555544
No 262
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=27 Score=38.75 Aligned_cols=160 Identities=14% Similarity=0.041 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChH
Q 002424 726 AAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHA 805 (924)
Q Consensus 726 Al~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~ 805 (924)
=++-+++.++.+.+.--......+++.+|+-|.+.|+-+.|+..+.+..+-+-..|...-.--...+||..+ ++.
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy---~D~-- 157 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFY---LDH-- 157 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh---ccH--
Confidence 344455555554443223444679999999999999999999999999988888888877777777788766 333
Q ss_pred HHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 002424 806 KMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVF 885 (924)
Q Consensus 806 ~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~ 885 (924)
.---+.++.+-+++.+.||-..+-+.-..-|--.++ ..+..+|...+-.++..|.+.+-..-..-+.|..-.-.
T Consensus 158 ~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms------vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~ 231 (393)
T KOG0687|consen 158 DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS------VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGL 231 (393)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH------HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhh
Confidence 556677888888899999977777664444433334 45677788888888888888887777777777766666
Q ss_pred HhcCCHHHHHH
Q 002424 886 DKLGRLAEREE 896 (924)
Q Consensus 886 ~~lGd~~~r~~ 896 (924)
-.+.+++.+.+
T Consensus 232 i~leR~dlktK 242 (393)
T KOG0687|consen 232 IALERVDLKTK 242 (393)
T ss_pred heeccchHHhh
Confidence 66666665544
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.37 E-value=40 Score=43.38 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=45.8
Q ss_pred HHHHHhcCChhhhHHHHH------HHHHHHHHhCCcHHHH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 754 AEIHKKSGNAVLGIPYAL------ASLSFCQLLNLDLLKA--SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~------~AL~la~~~g~~~~~A--~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
|..|..+|+.++|+..+. +|+.++.+......+. .|.. |+..+...|++ -+|-+++.+.+-...+.=..
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~-L~s~L~e~~kh--~eAa~il~e~~sd~~~av~l 1035 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEE-LVSRLVEQRKH--YEAAKILLEYLSDPEEAVAL 1035 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHH-HHHHHHHcccc--hhHHHHHHHHhcCHHHHHHH
Confidence 444566777777776663 5677776554443333 3344 67777778887 67777776666555544444
Q ss_pred HHHHHHHH
Q 002424 826 ELRARAFI 833 (924)
Q Consensus 826 ~~~A~a~~ 833 (924)
+.+|..|.
T Consensus 1036 l~ka~~~~ 1043 (1265)
T KOG1920|consen 1036 LCKAKEWE 1043 (1265)
T ss_pred HhhHhHHH
Confidence 44444443
No 264
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.25 E-value=41 Score=34.19 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=103.9
Q ss_pred HHHHHHhhCchHHHHhHHHHHHh------hcCCCC----ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc
Q 002424 591 RATAWEAYGSAPLTRVNTLIYAT------CFSDGS----SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK 660 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~------~~~~~~----~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~ 660 (924)
...+|.++|...+.-...-+.-. .|.+.+ +.|... -+.-++..|..++|++-|.....- .++.
T Consensus 19 ~~~lw~rfgp~v~giailvVlGtag~~gy~yw~~s~as~sgd~fl-----aAL~lA~~~k~d~Alaaf~~lekt--g~g~ 91 (221)
T COG4649 19 AKTLWKRFGPAVIGIAILVVLGTAGYVGYTYWQTSRASKSGDAFL-----AALKLAQENKTDDALAAFTDLEKT--GYGS 91 (221)
T ss_pred HHHHHHHcccHHHHHHHHHHhccccceeeehhcccccccchHHHH-----HHHHHHHcCCchHHHHHHHHHHhc--CCCc
Confidence 45799999987766553322211 111111 222222 234456779999999998865542 1111
Q ss_pred hHHHHH-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 661 SRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 661 ~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
+-.+ .++.. ......|+-.+|...+..+..-.+.. .-++-.+.++-+.+++..|-|+.=...++.+-.
T Consensus 92 --YpvLA~mr~a-t~~a~kgdta~AV~aFdeia~dt~~P----~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~---- 160 (221)
T COG4649 92 --YPVLARMRAA-TLLAQKGDTAAAVAAFDEIAADTSIP----QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG---- 160 (221)
T ss_pred --chHHHHHHHH-HHHhhcccHHHHHHHHHHHhccCCCc----chhhHHHHHHHHHHHhccccHHHHHHHhhhccC----
Confidence 1111 12222 56678999999999999887632211 112457888999999999999988877775432
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 740 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 740 ~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
.....+..+.-.+|..-.+.|++..|...+.+-..
T Consensus 161 -d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 161 -DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred -CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 22234444555677778899999999988875444
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.22 E-value=25 Score=36.87 Aligned_cols=220 Identities=15% Similarity=-0.022 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 665 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~ 665 (924)
..+-.++.+++.+|...+++.--.-.+.-.- +...+++-||..+...|+|+.|.+.++...+.=|...- ..
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y---a~ 136 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---AH 136 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCC------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH---HH
Confidence 3466788999999999999884321222222 23477899999999999999999999987776443222 22
Q ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cch
Q 002424 666 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQV 744 (924)
Q Consensus 666 l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~ 744 (924)
+.-. .....-|++.-|.+-+.+.-. .++.||........+. ..-++.+|..-+.+--. ... ..+
T Consensus 137 lNRg---i~~YY~gR~~LAq~d~~~fYQ----~D~~DPfR~LWLYl~E-----~k~dP~~A~tnL~qR~~---~~d~e~W 201 (297)
T COG4785 137 LNRG---IALYYGGRYKLAQDDLLAFYQ----DDPNDPFRSLWLYLNE-----QKLDPKQAKTNLKQRAE---KSDKEQW 201 (297)
T ss_pred hccc---eeeeecCchHhhHHHHHHHHh----cCCCChHHHHHHHHHH-----hhCCHHHHHHHHHHHHH---hccHhhh
Confidence 2211 123468999999887776654 2445654332222221 23467777755443222 222 223
Q ss_pred hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 745 ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ-LLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 745 ~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~-~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
+---+...+|.|--+ ....++.+-++ ....--...++..-||..++..|.. .+|..++.-++.-- .-
T Consensus 202 G~~iV~~yLgkiS~e--------~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~--~~A~~LfKLaiann--Vy 269 (297)
T COG4785 202 GWNIVEFYLGKISEE--------TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL--DEATALFKLAVANN--VY 269 (297)
T ss_pred hHHHHHHHHhhccHH--------HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHh--HH
Confidence 333345555543321 11112222221 0111123346678899999999998 99999988766532 22
Q ss_pred CHHHHHHHHHHHHHhhhc
Q 002424 824 GLELRARAFIAEAKCLLS 841 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la 841 (924)
+...---|++.|++..-.
T Consensus 270 nfVE~RyA~~EL~~l~q~ 287 (297)
T COG4785 270 NFVEHRYALLELSLLGQD 287 (297)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 333444566666665544
No 266
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.21 E-value=4.2 Score=35.60 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=56.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
.+..+..+..+|......++.-.+ ++...+.++-.++..+...|+|.+++++.-..+.++++..++
T Consensus 14 lkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 14 LKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 345688899999999999887422 666799999999999999999999999999999999887765
No 267
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.99 E-value=7.6 Score=38.33 Aligned_cols=87 Identities=11% Similarity=-0.050 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..+.......++.+++..+|....-.-|+...-. + +...+++.+|+|.+|..+++.+.. +
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d--~----~dg~l~i~rg~w~eA~rvlr~l~~--------~ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELD--M----FDGWLLIARGNYDEAARILRELLS--------S 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccc--h----hHHHHHHHcCCHHHHHHHHHhhhc--------c
Confidence 4455566666666678999999998886665555433311 1 112678899999999999999876 3
Q ss_pred cchHHHHHHHHHHHHHHcCCH
Q 002424 703 MDLKTEASLRHARTLLAANQF 723 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~ 723 (924)
......+.-.++.++..+||.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 333567777788888888764
No 268
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.87 E-value=1.1 Score=31.28 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTEAVCL 400 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~Eai~~ 400 (924)
+|++++|.++...|++++|+..+++.|..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 48999999999999999999999998763
No 269
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.73 E-value=1.3 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhc
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLS 657 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~ 657 (924)
++.++|.++...|++++|...+++..+.||.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778999999999999999999999998884
No 270
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.99 E-value=1.9 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
+++..+|.++...|+++.|+..+.+|+++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566777777777777777777777776653
No 271
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.73 E-value=13 Score=39.66 Aligned_cols=113 Identities=19% Similarity=0.093 Sum_probs=64.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
+..-|.-+..+|+|.||...+.+|......+.. + -.-|+. +.+ ++.. ...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l------k--------EkP~e~----eW~-eLdk-----------~~t 230 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQL------K--------EKPGEP----EWL-ELDK-----------MIT 230 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh------c--------cCCCCh----HHH-HHHH-----------hhh
Confidence 444567778899999999988887755432110 0 001110 000 0100 022
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
-.+++.+.+++..|+|-++++..++.|.. ..++..++..+|..|...-++..|...+..+|++
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 34556666667777777777777666642 3344666666777777777777776666665554
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.67 E-value=10 Score=37.97 Aligned_cols=77 Identities=18% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..++.++++.++..+..+.+. ..+.....+.+++.+|++.+|+..++++.. +......+.-+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~--------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------~~~~~p~~kAL 83 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPE--------FPELDLFDGWLHIVRGDWDDALRLLRELEE------RAPGFPYAKAL 83 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhCCHHHHHHHHHHHhc------cCCCChHHHHH
Confidence 6788999999999999999887442 568888999999999999999999998643 22222333334
Q ss_pred HHHHHHhcCCh
Q 002424 753 LAEIHKKSGNA 763 (924)
Q Consensus 753 la~i~~~~G~~ 763 (924)
+|.++...|++
T Consensus 84 lA~CL~~~~D~ 94 (160)
T PF09613_consen 84 LALCLYALGDP 94 (160)
T ss_pred HHHHHHHcCCh
Confidence 44445555555
No 273
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=8 Score=42.36 Aligned_cols=91 Identities=20% Similarity=0.092 Sum_probs=72.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G---~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
..++..|++..|...|+++..+.. | ..+.+...++++.... .-.+|.+++++++. ....++++
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g-----~---n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~------~D~~~ira 229 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAG-----D---NPEILLGLAEALYYQAGQQMTAKARALLRQALA------LDPANIRA 229 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh------cCCccHHH
Confidence 788999999999999999998743 3 4566777777775554 45677888888876 35667899
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+..+|..+...|+|..|......-++..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 9999999999999999988877666654
No 274
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.27 E-value=72 Score=37.21 Aligned_cols=181 Identities=14% Similarity=0.038 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-------CHHHHHHHHHHHhhhhhcc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-------HLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-------~~~~A~~~l~~ll~l~~~~ 698 (924)
..+.+||......|+|+-|...++.++.-|..-..-.+..-+..+...-.+..| +.++....++.+...+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345778888888999999999999988866422211111111111111222222 2236666677666554431
Q ss_pred C---CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcccchhHHHHHHHHHHHH--HhcCChhhhHHHHHH
Q 002424 699 T---GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY-KFNLQVENASVLLLLAEIH--KKSGNAVLGIPYALA 772 (924)
Q Consensus 699 ~---~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~-~~gd~~~~a~al~~la~i~--~~~G~~~~Al~~l~~ 772 (924)
. ...+.....+....++++..+|.|.+|...+-+....+- ..-...+.+-++=..|.++ .....+......+++
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK 368 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK 368 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH
Confidence 1 012335778889999999999999888877666655421 0011112444555566666 443333222222211
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 773 SLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 773 AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+ .+ . ...=|.-|...|.. ..|++++..+++....
T Consensus 369 ~-------af-----~-~vLAg~~~~~~~~~--~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 369 Y-------AF-----H-MVLAGHRYSKAGQK--KHALRCYKQALQVYEG 402 (414)
T ss_pred H-------HH-----H-HHHHHHHHHHCCCH--HHHHHHHHHHHHHhCC
Confidence 1 11 1 22245677889998 9999999999988653
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.13 E-value=1.9 Score=33.02 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
.++..++..+...|++++|.+.++++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778888889999999999999988874
No 276
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.37 E-value=8.6 Score=40.54 Aligned_cols=97 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH-------hCCcHHHHHHHHH
Q 002424 721 NQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL-------LNLDLLKASATLT 792 (924)
Q Consensus 721 G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~-------~g~~~~~A~al~~ 792 (924)
..+++|++.+.-++-.+.-.+ +....+.+.+.+|.+|...|+.+.....+.+|+....+ -.....++.++..
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 355666666666655444333 44456888899999999999976666666666655432 1235566778888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 793 LAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
+|++...+|.. ++|.+.+.+++..-
T Consensus 171 igeL~rrlg~~--~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNY--DEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCH--HHHHHHHHHHHcCC
Confidence 99999999998 99999888876543
No 277
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.71 E-value=11 Score=44.13 Aligned_cols=131 Identities=15% Similarity=0.088 Sum_probs=81.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
..+++..+-.+|-++.|+...+....+| +.++..|+++.|.++..++ . ..
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rF-----------------eLAl~lg~L~~A~~~a~~~-------~------~~ 347 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRF-----------------ELALQLGNLDIALEIAKEL-------D------DP 347 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHH-----------------HHHHHCT-HHHHHHHCCCC-------S------TH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHh-----------------HHHHhcCCHHHHHHHHHhc-------C------cH
Confidence 4667777788898999988877655554 6889999999998654433 1 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
..+.++|+..+..|+++-|.+++.++-.. -.+..+|..+|+. .-+.+-..+|...|+--.+-
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------------~~L~lLy~~~g~~----~~L~kl~~~a~~~~~~n~af 409 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDF--------------SGLLLLYSSTGDR----EKLSKLAKIAEERGDINIAF 409 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------------HHHHHHHHHCT-H----HHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------------cccHHHHHHhCCH----HHHHHHHHHHHHccCHHHHH
Confidence 57899999999999999999998876331 1233456677775 23334446666666543333
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
.+.+ -+|+. ++..++|.+.
T Consensus 410 ~~~~-------~lgd~--~~cv~lL~~~ 428 (443)
T PF04053_consen 410 QAAL-------LLGDV--EECVDLLIET 428 (443)
T ss_dssp HHHH-------HHT-H--HHHHHHHHHT
T ss_pred HHHH-------HcCCH--HHHHHHHHHc
Confidence 3333 24554 5555555443
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.66 E-value=86 Score=34.93 Aligned_cols=138 Identities=22% Similarity=0.193 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh-HHH
Q 002424 742 LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALP-LIL 820 (924)
Q Consensus 742 d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp-~vl 820 (924)
.....+..++..+.+-.+.|+++.|...+.++...-...+.. ...+.+.-+.++...|.. .+|+..+++.+. ...
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~--~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQ--EEAIQKLRELLKCRLS 216 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhh
Confidence 355667788999999999999999988887766543211111 234455567788889998 999999999888 222
Q ss_pred ---------------------------hhCCHHHHHHHHHHHHHhhhcC-CCCCCCCChHHHHHHHHHHHHHHHhhcCHH
Q 002424 821 ---------------------------GHGGLELRARAFIAEAKCLLSD-PSFSVSQNPEAVLDPLRQASEELQVLEDHE 872 (924)
Q Consensus 821 ---------------------------~~gd~~~~A~a~~~LAr~~la~-~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~ 872 (924)
........|+++..+|+-.... .. ...+....++..+++|..... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~-~~~~~~~~~~~~~~~a~~~~~-----~ 290 (352)
T PF02259_consen 217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSK-LSSESSDEILKYYKEATKLDP-----S 290 (352)
T ss_pred hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHHHhCh-----h
Confidence 2334678888898888655552 11 114778889999999876643 2
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 002424 873 LAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 873 ~~~~vl~~lA~l~~~lGd 890 (924)
..+ +++..|..+..+-+
T Consensus 291 ~~k-~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 291 WEK-AWHSWALFNDKLLE 307 (352)
T ss_pred HHH-HHHHHHHHHHHHHH
Confidence 222 66666666665543
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.74 E-value=2.8 Score=32.00 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLSQQH 404 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~Aqe~ 404 (924)
+.+.+|..|...|++++|++.++++|+..=++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 56889999999999999999999999875433
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.52 E-value=1e+02 Score=34.48 Aligned_cols=161 Identities=13% Similarity=-0.049 Sum_probs=115.9
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
..+.+|++.+|....++++.-++ .| ..+....-..+...|+...-...++..+..-. .|..--..+.-+.
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~P----tD----lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYP----TD----LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPCYSYVHGMY 181 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCc----hh----hhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcHHHHHHHHH
Confidence 44689999999999999998433 23 34455556677889999999888888765211 2333346677888
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
|-....+|-+..|...+.+|+++-+ ++-+..++ +|.|+..-|+. .++.+..+..-...+ . +-.+.+.-|.
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~---~D~Wa~Ha---~aHVlem~~r~--Keg~eFM~~ted~Wr-~-s~mlasHNyW 251 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINR---FDCWASHA---KAHVLEMNGRH--KEGKEFMYKTEDDWR-Q-SWMLASHNYW 251 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCC---cchHHHHH---HHHHHHhcchh--hhHHHHHHhcccchh-h-hhHHHhhhhH
Confidence 8889999999999999999988753 44444444 56666667777 899998887766665 2 3345566677
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 834 AEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 834 ~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
.-|-+|+. .+.++.|++.+++
T Consensus 252 H~Al~~iE------~aeye~aleIyD~ 272 (491)
T KOG2610|consen 252 HTALFHIE------GAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhhc------ccchhHHHHHHHH
Confidence 77888887 5677777776663
No 281
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=80.00 E-value=14 Score=35.07 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD---------LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~---------~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+.++|....+.+++-+++-++++|+.++.+.... ......-.+||..|..+|++ +=.+++|+-+-+.|+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~--~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDS--DYELKYLQLASEKVL 81 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCCh--HHHHHHHHHHHHHHH
Confidence 4678888889999999999999999998876311 11222335699999999999 778888876666555
Q ss_pred h
Q 002424 821 G 821 (924)
Q Consensus 821 ~ 821 (924)
.
T Consensus 82 t 82 (140)
T PF10952_consen 82 T 82 (140)
T ss_pred H
Confidence 3
No 282
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.28 E-value=2.6 Score=28.45 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALK 649 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~ 649 (924)
.+...||..+..+|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988776
No 283
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.28 E-value=33 Score=40.40 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=77.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHcccchh---
Q 002424 672 HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLF---CMCYKFNLQVE--- 745 (924)
Q Consensus 672 ~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL---~~~~~~gd~~~--- 745 (924)
|..++.+|+++++.+..+.-. +.+. ....-....+..+..+|-++.|+...+.-- +++-+.|+-..
T Consensus 268 fk~av~~~d~~~v~~~i~~~~-ll~~-------i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASN-LLPN-------IPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHHTT-HHH-----HHHH-TGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhh-hccc-------CChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHH
Confidence 367888999999777664221 1121 223446677788888888888887765432 12222222211
Q ss_pred ------HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 746 ------NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 746 ------~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
....+..+|.+-+..|+.+-|...+.++-.... |.-++...|+. +-++..+..+
T Consensus 340 ~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~--------------L~lLy~~~g~~------~~L~kl~~~a 399 (443)
T PF04053_consen 340 IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSG--------------LLLLYSSTGDR------EKLSKLAKIA 399 (443)
T ss_dssp HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHH--------------HHHHHHHCT-H------HHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccc--------------cHHHHHHhCCH------HHHHHHHHHH
Confidence 233688889999999998888888777665544 55566667773 3355555666
Q ss_pred HhhCCHHHHHHHHHHHH
Q 002424 820 LGHGGLELRARAFIAEA 836 (924)
Q Consensus 820 l~~gd~~~~A~a~~~LA 836 (924)
...|+....-.+++.++
T Consensus 400 ~~~~~~n~af~~~~~lg 416 (443)
T PF04053_consen 400 EERGDINIAFQAALLLG 416 (443)
T ss_dssp HHTT-HHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHcC
Confidence 77777666666655444
No 284
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.45 E-value=1.1e+02 Score=33.38 Aligned_cols=157 Identities=18% Similarity=0.056 Sum_probs=80.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
++++|++|++++.+..... .+.|+...|-++..--++.-.+.+.+.-... +-+|.++..
T Consensus 2 ~~kky~eAidLL~~Ga~~l--------------------l~~~Q~~sg~DL~~lliev~~~~~~~~~~~~-~~rl~~l~~ 60 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALIL--------------------LKHGQYGSGADLALLLIEVYEKSEDPVDEES-IARLIELIS 60 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHH--------------------HHTT-HHHHHHHHHHHHHHHHHTT---SHHH-HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHH--------------------HHCCCcchHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH
Confidence 4677777777776654332 2444444444433333333333333333332 234666666
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH-----------HHHHHHh
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ-----------ASEELQV 867 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~-----------A~~~f~~ 867 (924)
.++..+ .+-.+++++++-+....+....-...+..+|+.+.. .+++..|..++-. .+..+..
T Consensus 61 ~~~~~~-p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~------e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~ 133 (260)
T PF04190_consen 61 LFPPEE-PERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWK------EGNYYEAERHFLLGTDPSAFAYVMLLEEWST 133 (260)
T ss_dssp HS-TT--TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHH------TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH
T ss_pred hCCCCc-chHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHh------hccHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 665541 245667777777774445555556667777877777 5666666665531 1122223
Q ss_pred hcCHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHH
Q 002424 868 LEDHELAAEAFYLIA-IVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 868 l~~~~~~~~vl~~lA-~l~~~lGd~~~r~~aa~~f~~l 904 (924)
-+.+.. .+.+...| .-|..+|+...|++....|.+-
T Consensus 134 ~~~~~e-~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 134 KGYPSE-ADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCcc-hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333333 34444444 4466778999888888888765
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.16 E-value=57 Score=35.34 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCch----HHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKS----RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~----~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
-+++-.......++|+|++-...+.+.+.-..+ +..+ .+..+- .--.-..+.+.-.++++.-+.......
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il-----DyiStS~~m~LLQ~FYeTTL~ALkdAK 139 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL-----DYISTSKNMDLLQEFYETTLDALKDAK 139 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 366677777788899999999888887763322 1111 011110 000011122222333332222111111
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc--------cchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN--------LQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g--------d~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
.....+..-..++.++..+|+|..-...+.++-.-|+... .+..+ +.-+--++|....+-.+--.++.
T Consensus 140 --NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE--iYAlEIQmYT~qKnNKkLK~lYe 215 (440)
T KOG1464|consen 140 --NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE--IYALEIQMYTEQKNNKKLKALYE 215 (440)
T ss_pred --cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh--hHhhHhhhhhhhcccHHHHHHHH
Confidence 2233566677899999999999999998888887776422 12222 23334456777766666667788
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH-HHHHHHHHHhhhc
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR-ARAFIAEAKCLLS 841 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~-A~a~~~LAr~~la 841 (924)
+|+.+-..+-.+.....++--=|.++++-|.. ++|-.-+=++.-...+.|++... +.-|..||.+.+.
T Consensus 216 qalhiKSAIPHPlImGvIRECGGKMHlreg~f--e~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmk 284 (440)
T KOG1464|consen 216 QALHIKSAIPHPLIMGVIRECGGKMHLREGEF--EKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMK 284 (440)
T ss_pred HHHHhhccCCchHHHhHHHHcCCccccccchH--HHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Confidence 99998877777777777766666777666654 88888888888888888876554 4458899999987
No 286
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=78.05 E-value=1.3e+02 Score=36.54 Aligned_cols=151 Identities=19% Similarity=0.160 Sum_probs=81.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCc-hH-HHH---HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SR-ILL---LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-~~-~~~---l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
+|..++.+|.|.||..++.+ -|. ++ .-+ +++--...-.+..|.-.+-..+.+...+-++.+. .|..
T Consensus 638 lA~~~Ay~gKF~EAAklFk~-------~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~k--ePka 708 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR-------SGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIK--EPKA 708 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH-------cCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcC--CcHH
Confidence 45567788999999877653 222 11 111 1110001355667777777777777777666444 4443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHH------HHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAH------SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~------~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
-+++++..|+...|++.+- -++++.++. ...+...+...+.-+.+...+.-|-+.+. +
T Consensus 709 -------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl--d~~ere~l~~~a~ylk~l~~~gLAaeIF~-------k 772 (1081)
T KOG1538|consen 709 -------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL--DKAEREPLLLCATYLKKLDSPGLAAEIFL-------K 772 (1081)
T ss_pred -------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc--chhhhhHHHHHHHHHhhccccchHHHHHH-------H
Confidence 3557788999999987653 233443322 22233344445544445554444443332 2
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
.|+ .-.+..++...|+. .+|..+-++.
T Consensus 773 ~gD-------~ksiVqlHve~~~W--~eAFalAe~h 799 (1081)
T KOG1538|consen 773 MGD-------LKSLVQLHVETQRW--DEAFALAEKH 799 (1081)
T ss_pred hcc-------HHHHhhheeecccc--hHhHhhhhhC
Confidence 222 11244555566666 7777765543
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.99 E-value=12 Score=36.91 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=46.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
..++..++.++++.++..+..+.+. ..+....-+.+++.+|++.+|+..+++...
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~--------~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPN--------LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCC--------ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 5777899999999999999888554 346677789999999999999999998754
No 288
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.19 E-value=72 Score=36.47 Aligned_cols=105 Identities=17% Similarity=0.063 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhcc--------------Cch---------HHHHHHHhhHHHHHHHcCCH
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV--------------SKS---------RILLLKLQLLHERSLHRGHL 681 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~--------------~~~---------~~~~l~l~l~~~~al~~G~~ 681 (924)
..++..++.++..+|++..|.+++++|+=.|... |.. +.-.+++-.......++|-|
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 4667889999999999999999999987554421 111 11112222111455689999
Q ss_pred HHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 682 KLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 682 ~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
..|.+++.-++.+-+ .+ | ...+++.+-.+.++.++|+-=+++.+....
T Consensus 120 rTAlE~~KlLlsLdp-~~--D---P~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 120 RTALEWCKLLLSLDP-DE--D---PLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCC-CC--C---cchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 999999999999722 11 5 445666666777888999888887776554
No 289
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.60 E-value=92 Score=35.91 Aligned_cols=142 Identities=14% Similarity=-0.047 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc-hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
-.+.-..+.+..++..++|.+|.+.++....+.+.... ..+..++. +..++.+.++.+|.+.++........
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~---~y~~WD~fd~~~A~~~l~~~~~~~~~---- 201 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCE---GYDAWDRFDHKEALEYLEKLLKRDKA---- 201 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHH---HHHHHHccCHHHHHHHHHHHHHHhhh----
Confidence 33445567777888999999999999998876222111 11122332 25778899999999999987762100
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-c-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-L-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
-......+..+..+. +++..+........... + ...-+.-|+.-|+=....|+|+.|...+=|++++.-+
T Consensus 202 -l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 202 -LNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -hHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 000112222222222 22222222222221111 1 2333445666777778899999999999999999864
No 290
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.82 E-value=9.4 Score=42.32 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=68.2
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE 708 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~ 708 (924)
-..|.-+..+|.|+||++.+..+....|--.- ..+ +.+ ..++...+|+.|+.-|..+++|-+ .-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---~~~--NRA-~AYlk~K~FA~AE~DC~~AiaLd~--------~Y~K 166 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---YHI--NRA-LAYLKQKSFAQAEEDCEAAIALDK--------LYVK 166 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCcc---chh--hHH-HHHHHHHHHHHHHHhHHHHHHhhH--------HHHH
Confidence 44567788999999999999988876652111 000 111 466778888999999998888621 2556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 709 ASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 709 a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
++.+++.....+|...||.+-++.+|++
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 7777888888889999998888888764
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.68 E-value=8.6 Score=42.60 Aligned_cols=91 Identities=10% Similarity=0.066 Sum_probs=70.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++.+|.|++|..+|.+..++ +|. -+....+++..+++..+|..|..-++.++.+-+.. ..+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~-------~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------~KAYSR 170 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV-------YPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY------VKAYSR 170 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc-------CCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH------HHHHHH
Confidence 4788999999999999998775 332 23446677888888888888888888877753322 556677
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
++......|...+|-..+..+|++-
T Consensus 171 R~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 171 RMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 7888888889999988888888775
No 292
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=75.56 E-value=57 Score=35.83 Aligned_cols=134 Identities=12% Similarity=0.045 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH-cCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH-RGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~-~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
+++.+....-+.++.+.|..++.+|+. .... ..+++.... ....+ .++...|..+++..+..++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~~~-~~~vy~~~A----~~E~~~~~d~~~A~~Ife~glk~f~~-------- 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-DKRC-TYHVYVAYA----LMEYYCNKDPKRARKIFERGLKKFPS-------- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCS--THHHHHHH----HHHHHTCS-HHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-CCCC-CHHHHHHHH----HHHHHhCCCHHHHHHHHHHHHHHCCC--------
Confidence 445555556666778999999998862 2111 123333221 33344 56667799999999987653
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
....+..-+..++..|+.+.|..++++++.. .......-.++......-.+.|+.+.......++.++.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3455666778889999999999999988762 11111122344444555556677666666665555543
No 293
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.40 E-value=83 Score=34.29 Aligned_cols=173 Identities=17% Similarity=0.079 Sum_probs=104.4
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL----AANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~----~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
....+++..|...+..+... + |+ .+...++.++. ...+..+|++++..+.. .+...++
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~----~--~~----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~ 112 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL----G--DA----AALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEAL 112 (292)
T ss_pred ccccccHHHHHHHHHHhhhc----C--Ch----HHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHH
Confidence 34667777777777766541 2 32 44444555443 23357778888874432 3335566
Q ss_pred HHHHHHHHh----cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCC-hHHHHHHHHHHHHhHHHh
Q 002424 751 LLLAEIHKK----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPN-HAKMASNLIQQALPLILG 821 (924)
Q Consensus 751 ~~la~i~~~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~-~~~~Al~lLe~aLp~vl~ 821 (924)
..+|.++.. ..++.+|..++.+|...- +... +.+...|+..+.. .|.. ...+|+..+..+....
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 667777755 336677887776665443 3222 4456667777753 2232 1136777777776554
Q ss_pred hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 822 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 822 ~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
...+.+.||.+|... .+...++.+|..++.+|.+ .++ ....+.++ ++...|
T Consensus 186 ------~~~a~~~lg~~y~~G--~Gv~~d~~~A~~wy~~Aa~----~g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 ------NPDAQLLLGRMYEKG--LGVPRDLKKAFRWYKKAAE----QGD----GAACYNLG-LMYLNG 236 (292)
T ss_pred ------CHHHHHHHHHHHHcC--CCCCcCHHHHHHHHHHHHH----CCC----HHHHHHHH-HHHhcC
Confidence 456778889888874 3445678899999999854 333 45566666 444444
No 294
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.59 E-value=6.5 Score=30.46 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+.++..++..||++.|.+.+++.+.. |+...+..+..++
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~----~~~~q~~eA~~LL 41 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE----GDEAQRQEARALL 41 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc----CCHHHHHHHHHHH
Confidence 467899999999999999999999852 5555554444433
No 295
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.12 E-value=4.9 Score=26.41 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q 002424 373 ALLCLGMMHFHFGHPKQALDVLTEAVCLS 401 (924)
Q Consensus 373 all~la~~h~~fg~~~~A~~~l~Eai~~A 401 (924)
+..++|.++..-|++++|...++++|++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 46789999999999999999999999764
No 296
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=72.85 E-value=6.1 Score=29.61 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+++..+|+|-...+++..|+..+.+||.+-.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 567788888888888888888888888886643
No 297
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.17 E-value=78 Score=36.48 Aligned_cols=133 Identities=17% Similarity=0.074 Sum_probs=72.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+.+++|..|..++..+.. + +.+.. .......+..+.-.-.+-+|.+|.+.++..+...... ..+...+..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~--r-l~~~~-~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---~~~~~~l~~ 211 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLR--R-LPGRE-EYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---NQEREGLKE 211 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHH--h-CCchh-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh---HhHHHHHHH
Confidence 567899999999999999887 2 33222 1223344445555577889999999999877642210 011111111
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH--HHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW--LSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~--~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+. +..+++..+............+.....+...+.... ...|++ +.|...+=++++.+.+
T Consensus 212 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gry--ddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 212 LV-------EVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRY--DDAVARLYRALELLAQ 273 (379)
T ss_pred HH-------HHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHH
Confidence 11 112333333333333332222212222222233333 346766 8898888888887754
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=72.01 E-value=33 Score=40.33 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
..+-.+||.+.++.|+.+||.+.+++..+.+|.... ..+..++. +..+..++|++++.++.+=
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~---l~IrenLi-e~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN---LNIRENLI-EALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch---hhHHHHHH-HHHHhcCCHHHHHHHHHHh
Confidence 456678999999999999999999999888773222 22333433 7889999999999888764
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.85 E-value=93 Score=35.59 Aligned_cols=154 Identities=15% Similarity=0.026 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----c-----ccchhH-------------HHHHHHHHHHHHhcCC
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-----F-----NLQVEN-------------ASVLLLLAEIHKKSGN 762 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-----~-----gd~~~~-------------a~al~~la~i~~~~G~ 762 (924)
...+++.+++++..+||++.|.++++++|-.+.. . ....+. ..++........+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999999865552 1 111111 3367777888889999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH----hh--CCHHHHHHHHHHHH
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL----GH--GGLELRARAFIAEA 836 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl----~~--gd~~~~A~a~~~LA 836 (924)
+..|++.+.--+.+- -.+|+++.-.....+| +.-++. +-=+++.++...... .. |=.+-.|-|++.++
T Consensus 119 ~rTAlE~~KlLlsLd-p~~DP~g~ll~ID~~A---Lrs~~y--~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 119 WRTALEWCKLLLSLD-PDEDPLGVLLFIDYYA---LRSRQY--QWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHHHHHHHHHHHhcC-CCCCcchhHHHHHHHH---HhcCCH--HHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 999999887666663 2346666555444444 334444 666666666544211 11 33445555555555
Q ss_pred Hhhh--cCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 837 KCLL--SDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 837 r~~l--a~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+... ..++....+..++|...|.+|+..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHh
Confidence 3310 0011222455678888888888755
No 300
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.29 E-value=2e+02 Score=33.16 Aligned_cols=175 Identities=17% Similarity=0.050 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHhhccCchH-HHHHHHhh---HHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 624 AALAHVKLIQHL--AVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQL---LHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 624 ~~~a~~~La~~~--a~~G~y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l---~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
+..+++.+-.++ +.+.+|.+|.+.-+....... ..+.+ +-.+.--+ ....+-..|+...-+..+..++..+.-
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 455566554444 456889999888776655422 22222 21111111 113445678877777777766664332
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
..|-++.+...+.+-+.++.-+-|++|-.++....- ... ......+|-+.-+|.|..-.++|..|..++.+|+..|
T Consensus 202 --rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~-pe~-~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 202 --RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY-PEA-ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred --cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC-ccc-cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 237788999999999999999999999999886531 111 1122568899999999999999999999999999998
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
-+++--..+-.+...+.-+.+-+|..
T Consensus 278 pq~~alGf~q~v~k~~ivv~ll~gei 303 (493)
T KOG2581|consen 278 PQHAALGFRQQVNKLMIVVELLLGEI 303 (493)
T ss_pred cchhhhhHHHHHHHHHHHHHHHcCCC
Confidence 64433333333333355555557764
No 301
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=18 Score=38.57 Aligned_cols=97 Identities=7% Similarity=-0.026 Sum_probs=77.7
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.++.--+|..|..+|.++..+-+ . .+....+.+.+++.+.+++....-...++++ ....+..+..+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP-------~-~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~h~fl 84 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINP-------T-VASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKAHYFL 84 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCC-------C-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHHHHHH
Confidence 45556688999999999888632 2 3456778899999998888888777777653 34457889999
Q ss_pred HHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
|.....+..+..|+..+.+|.++.++.....
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~ 115 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLLREQPFTF 115 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998877663
No 302
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=70.06 E-value=3e+02 Score=34.78 Aligned_cols=182 Identities=13% Similarity=-0.011 Sum_probs=97.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
-|..+.+.|+++||+.+|+......+ . | .+.++.....+...|++++|..+++++..-++ . -+.+
T Consensus 49 kaLsl~r~gk~~ea~~~Le~~~~~~~-~-D----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-------~--eell 113 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLLEALYGLKG-T-D----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYP-------S--EELL 113 (932)
T ss_pred HHHHHHHhcCchhHHHHHhhhccCCC-C-c----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC-------c--HHHH
Confidence 35668899999999977775443322 1 2 12333333678899999999999999987533 2 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHH-----HHHHHHHHH-HHhCCcH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP-----YALASLSFC-QLLNLDL 784 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~-----~l~~AL~la-~~~g~~~ 784 (924)
+..=..+.+-++|.+-... +++.+...+... ...+.....+....-.+..++. +..+....- .+-|--.
T Consensus 114 ~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~--yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~ 188 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKA---ALQLYKNFPKRA--YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhCCccc--chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence 4444444555555443322 233333333332 2223333333334444444433 222222111 1123333
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE 835 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~L 835 (924)
..+++.+ --.++..+|.. ++|++.+..-+.-.+..++..++-.-+-.+
T Consensus 189 s~aE~~L-yl~iL~~~~k~--~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 189 SEAEIIL-YLLILELQGKY--QEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hHHHHHH-HHHHHHhcccH--HHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4444444 34455567776 999999877777767777766644443333
No 303
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=69.97 E-value=71 Score=30.04 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=65.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH----HhcCChhhhHHHHHHHHHHH-HHhCCcHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH----KKSGNAVLGIPYALASLSFC-QLLNLDLLKA 787 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~----~~~G~~~~Al~~l~~AL~la-~~~g~~~~~A 787 (924)
.+.-+.++||+-.|++.+++++..-.+... ..-++..-|.|+ ....+++.=+.++.-+++-+ +...+....|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A 78 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA 78 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence 355678999999999999998774332222 124444555555 35567777788888888877 5667777888
Q ss_pred HHHHHHHHHHHHcCCC-hHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPN-HAKMASNLIQQAL 816 (924)
Q Consensus 788 ~al~~La~l~~~lG~~-~~~~Al~lLe~aL 816 (924)
..+..||.- +|.. +++++..-.+++|
T Consensus 79 ~~L~~la~~---l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 79 HSLFELASQ---LGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHHHHHHh
Confidence 888888854 3332 3466666555554
No 304
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.30 E-value=6.5 Score=26.47 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhCChHHHHHHHHH
Q 002424 372 IALLCLGMMHFHFGHPKQALDVLTE 396 (924)
Q Consensus 372 yall~la~~h~~fg~~~~A~~~l~E 396 (924)
.+.++||..|..-|+.++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3688999999999999999988764
No 305
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=71 Score=35.72 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=80.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhh
Q 002424 617 DGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 617 ~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~ 696 (924)
.....+..+.-+-.-|.-+....+|..|...+...+..=. ++..+.+..+..-.-..++.|+|+.|..=+.+++.+
T Consensus 73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc--~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-- 148 (390)
T KOG0551|consen 73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC--ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-- 148 (390)
T ss_pred ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC--CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3344556777777778888888899999998887765422 233333333222114567899999999999999886
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
||. ...+.++-+.+++.+.++.+|+.++++.+.+
T Consensus 149 -----~P~-h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 149 -----KPT-HLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred -----Ccc-hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 332 6788999999999999999999999988663
No 306
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=66.70 E-value=70 Score=41.72 Aligned_cols=191 Identities=17% Similarity=0.031 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhcc-CchH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSV-SKSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~-~~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+.-...-+.....+|++.+|.+ +.++...+... +..+ -..-++......+-+.|++.+|......+.-+..++.+.|
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 3444455555667888999988 77666655422 1111 1111222111566789999999999998888777777778
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
.........+++.+....+....|+..+.+++..-.- ..+....+..-.+++.+.+..++++.|+.++..|+++....
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 8888889999999999999999999999988764221 11233345566788888899999999999999999988654
Q ss_pred CC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 781 NL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 781 g~--~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.- ...-+.....++.+...+|.. ..|+.+......+
T Consensus 1091 ~g~~~l~~~~~~~~~a~l~~s~~df--r~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDF--RNALEHEKVTYGI 1128 (1236)
T ss_pred cCccchhhhhHHHHHHHHHhhhHHH--HHHHHHHhhHHHH
Confidence 43 233444455566666556554 5555555544433
No 307
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.67 E-value=23 Score=39.43 Aligned_cols=92 Identities=12% Similarity=0.027 Sum_probs=68.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
--++..-+|..|...|..-+. ...+ |+++.+..+.+++-+....|+|..|+.-+..++.+ . .-...+.+.
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk--~kc~--D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----~--P~h~Ka~~R 158 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLK--KKCA--DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----K--PTHLKAYIR 158 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hcCC--CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----C--cchhhhhhh
Confidence 366778899999999998877 4555 88899999999999999999999999999888763 2 223444555
Q ss_pred HHHHHHhcCChhhhHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL 774 (924)
-|.++....++..|...+...+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 5555656556555555554443
No 308
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.44 E-value=1.6e+02 Score=32.89 Aligned_cols=126 Identities=15% Similarity=0.033 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
.-+..+.+.++-+.++--......|.++.|+-++++|+- +.|++.+...+......|.+.+.--...-+|-.++
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDk--ena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---- 155 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDK--ENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---- 155 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc----
Confidence 345666777777777766677788999999999999999 99999999999999999988776665555554444
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+..-.-+.+++|..++++-||=.+.-+--..+|.-..+.-+..+ ||..|-+.
T Consensus 156 -----D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~---Aa~Lfld~ 207 (393)
T KOG0687|consen 156 -----DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKE---AADLFLDS 207 (393)
T ss_pred -----cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHH---HHHHHHHH
Confidence 35556678899999999999877776666667766666666655 44444443
No 309
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.00 E-value=10 Score=24.80 Aligned_cols=31 Identities=23% Similarity=0.030 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
.++.++|..+...|++++|...++++.+..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567889999999999999999988876544
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.38 E-value=4.4 Score=47.65 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=73.1
Q ss_pred HHHHHHHHH-HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 749 VLLLLAEIH-KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 749 al~~la~i~-~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
+-+++|.+| ...|++..|..++++|+..+-.-.+ ..+..||.+++.-|.. -.|-.+|.++|.+. . -
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-----v~~v~la~~~~~~~~~--~da~~~l~q~l~~~-~-----s 674 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-----VPLVNLANLLIHYGLH--LDATKLLLQALAIN-S-----S 674 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhc-----ccHHHHHHHHHHhhhh--ccHHHHHHHHHhhc-c-----c
Confidence 344455555 4679999999999998877743333 4467788888888876 88999999998876 2 2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
+-..++.+|+++++ ..+...|++++++|++.
T Consensus 675 epl~~~~~g~~~l~------l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLA------LKNISGALEAFRQALKL 705 (886)
T ss_pred CchHHHhcchhHHH------HhhhHHHHHHHHHHHhc
Confidence 33467888999999 78888999999998863
No 311
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.91 E-value=2.9e+02 Score=35.52 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=108.3
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-chH-------
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSR------- 662 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-~~~------- 662 (924)
..++|..++.+.+-..----....|-+..++ ..+..........|.|++-...|.-|....++.. +..
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikadDp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKADDP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcCCc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 4578988888877655321122222222111 2344555566678899998888888877655432 111
Q ss_pred ---H----------HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002424 663 ---I----------LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAV 729 (924)
Q Consensus 663 ---~----------~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~ 729 (924)
+ ....++-.+.+.+..|.|+.|.-++..... ...++..+..+|+|..|.+.
T Consensus 1179 t~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN----------------~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN----------------FAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHH
Confidence 0 011122112566677777777666654432 33466677788888888887
Q ss_pred HHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHcCCChHHHH
Q 002424 730 AHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-LLKASATLTLAELWLSFGPNHAKMA 808 (924)
Q Consensus 730 l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~~~A~al~~La~l~~~lG~~~~~~A 808 (924)
.+.+-. ++++...|..-...+++ .+|+-.|+. ...|.-+-.|-+.|...|- |++-
T Consensus 1243 aRKAns-----------~ktWK~VcfaCvd~~EF-----------rlAQiCGL~iivhadeLeeli~~Yq~rGy--FeEl 1298 (1666)
T KOG0985|consen 1243 ARKANS-----------TKTWKEVCFACVDKEEF-----------RLAQICGLNIIVHADELEELIEYYQDRGY--FEEL 1298 (1666)
T ss_pred hhhccc-----------hhHHHHHHHHHhchhhh-----------hHHHhcCceEEEehHhHHHHHHHHHhcCc--HHHH
Confidence 776533 44555555444444443 233333332 1233334556666766664 5899
Q ss_pred HHHHHHHHhHHHhhCC
Q 002424 809 SNLIQQALPLILGHGG 824 (924)
Q Consensus 809 l~lLe~aLp~vl~~gd 824 (924)
+.++|..|-+-+.|..
T Consensus 1299 Isl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMG 1314 (1666)
T ss_pred HHHHHhhhchhHHHHH
Confidence 9998888877666644
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.29 E-value=1.2e+02 Score=33.20 Aligned_cols=94 Identities=18% Similarity=0.088 Sum_probs=69.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 792 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 792 (924)
-+..+..+|++.+.+.++-+.-. .....-++++-+--.+|.+.|+|...++....=|.--..-+.+.+.+.|-++
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq-----~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQ-----VPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 35667889999999888765433 2333446676666778999999988877765444443455667788889999
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 002424 793 LAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe 813 (924)
|-.|++=+|.. ++|.++..
T Consensus 164 Ll~VLlPLG~~--~eAeelv~ 182 (309)
T PF07163_consen 164 LLHVLLPLGHF--SEAEELVV 182 (309)
T ss_pred HHHHHhccccH--HHHHHHHh
Confidence 99999989987 99999984
No 313
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=63.70 E-value=54 Score=35.16 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cccchhH------HHHHHHHHHHHHhcCChhhhHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK------FNLQVEN------ASVLLLLAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~------~gd~~~~------a~al~~la~i~~~~G~~~~Al~~l~~A 773 (924)
...++...|.-+...|+|.||...+.+++...+. -|++.|. .-.+++.+++++..|++.+++++...-
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4466777888899999999999999999875553 2344332 236889999999999999999988776
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
|..-- . --.|+..-|..+...=.. ++|.+=+..+|..
T Consensus 257 L~~~~----~--nvKA~frRakAhaa~Wn~--~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 257 LRHHP----G--NVKAYFRRAKAHAAVWNE--AEAKADLQKVLEL 293 (329)
T ss_pred HhcCC----c--hHHHHHHHHHHHHhhcCH--HHHHHHHHHHHhc
Confidence 65432 1 123344445554333334 6666665555543
No 314
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=63.15 E-value=20 Score=41.63 Aligned_cols=69 Identities=17% Similarity=0.048 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHh
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELG 692 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll 692 (924)
+.+.+..++.|||.+++.+|+|+.|..++.+|....++.-......++. ...+..|+...|...+.+--
T Consensus 614 v~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lav----yidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 614 VEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAV----YIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHH----HHHHhcCCCcchHHHHHhcc
Confidence 4667788999999999999999999999999998876544444333331 46788999999998887653
No 315
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.04 E-value=1.4e+02 Score=33.25 Aligned_cols=121 Identities=18% Similarity=0.104 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-chH-----HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSR-----ILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-~~~-----~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
.|-.+.....||..|-..++|..|-..|.-. +..+ ... -..+++.++ +.++..|+-.+|+.+..++.-+
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I----~~~tg~~~~d~~~kl~l~iria-rlyLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVGI----PLDTGQKAYDVEQKLLLCIRIA-RLYLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc----CcccchhhhhhHHHHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHh
Confidence 4445566778999999999999998877632 2222 111 122344444 7889999999999998877654
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
-... ..+....+....-++++-.+|+|-||...+.+.... +.++......+|
T Consensus 174 ~a~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~--ki~~e~~~~~aL 225 (399)
T KOG1497|consen 174 QAES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR--KIVDESERLEAL 225 (399)
T ss_pred hhcc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHH
Confidence 3333 366778888899999999999999999888876542 334444443333
No 316
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=61.96 E-value=7.9 Score=27.97 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAA 727 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl 727 (924)
-+.+++++|.++...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4788999999999999999986
No 317
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.48 E-value=2.8e+02 Score=31.29 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=73.0
Q ss_pred cCHHHHHHHHHHHHHHhhccCch-HHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 639 KGYKEAFSALKIAEEKFLSVSKS-RILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 639 G~y~eA~~~L~~a~~~f~~~~~~-~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
++.++|++.++...+.+...... .++.+...++ +..+..||..+++..+......-...+..++.........-..++
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~-r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYy 167 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIA-RLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYY 167 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHH
Confidence 58999999999999987755542 3344433333 677799999999999999888666666666555666677788899
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~ 736 (924)
...|+|+.+.+..-.-+..
T Consensus 168 k~~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 168 KKIGDFASYYRHALLYLGC 186 (380)
T ss_pred HHHHhHHHHHHHHHHHhcc
Confidence 9999999888776655543
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=61.19 E-value=3.3e+02 Score=32.00 Aligned_cols=98 Identities=13% Similarity=-0.020 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH----HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI----LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~----~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.-.+|.-|..+-.+|++.+|..++-.....-. ++.. -.+. +.. .-++...+.+.-...+..+...+.
T Consensus 6 ~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~---~~~f~lkeEvl~-gri-lnAffl~nld~Me~~l~~l~~~~~---- 76 (549)
T PF07079_consen 6 QYLLCFQGFILQKQKKFQESEKIFSKIYDEKE---SSPFLLKEEVLG-GRI-LNAFFLNNLDLMEKQLMELRQQFG---- 76 (549)
T ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhh---cchHHHHHHHHh-hHH-HHHHHHhhHHHHHHHHHHHHHhcC----
Confidence 34578889999999999999988876554322 2211 1111 111 355667777777666665554211
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
. .+...+-.+.+..+.|+|+.|++.+..--.
T Consensus 77 ~----s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 77 K----SAYLPLFKALVAYKQKEYRKALQALSVWKE 107 (549)
T ss_pred C----chHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 457777788888999999999988875544
No 319
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.49 E-value=11 Score=44.54 Aligned_cols=100 Identities=17% Similarity=0.077 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..++.-|.+|...|+...|..++..++-+ -+.....-+.++|++.++.|-.-.|--.+.++|.+- +.
T Consensus 606 ~w~~ln~aglywr~~gn~~~a~~cl~~a~~~-----~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~s---- 674 (886)
T KOG4507|consen 606 IWLILNEAGLYWRAVGNSTFAIACLQRALNL-----APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SS---- 674 (886)
T ss_pred eEEEeecccceeeecCCcHHHHHHHHHHhcc-----ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--cc----
Confidence 3455666778889999999999999988763 233334467889999999998889999999999886 22
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
+....+.+|.+++.+..- ..|++++.++|..
T Consensus 675 epl~~~~~g~~~l~l~~i--~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNI--SGALEAFRQALKL 705 (886)
T ss_pred CchHHHhcchhHHHHhhh--HHHHHHHHHHHhc
Confidence 334456788999888887 9999999999865
No 320
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.84 E-value=3.9e+02 Score=32.71 Aligned_cols=75 Identities=13% Similarity=-0.012 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH---HHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS---VLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~---al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
..++..+...|.|.||.+.+.+.=. ..+..+.. -+.-.++=+...|.+++--.+.++-.+.|+....+..+|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~-----enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGH-----ENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCc-----hhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence 3456666666666666666543211 01111111 244556666677777666666666666677766666555
Q ss_pred HHH
Q 002424 788 SAT 790 (924)
Q Consensus 788 ~al 790 (924)
+.+
T Consensus 711 EmL 713 (1081)
T KOG1538|consen 711 EML 713 (1081)
T ss_pred HHh
Confidence 543
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=58.61 E-value=2.9e+02 Score=30.59 Aligned_cols=97 Identities=29% Similarity=0.317 Sum_probs=67.9
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
.+...+...+.++.+-...|.. +.|...+.++...-...++ ....+.+..|+...+ .|+..+|+..|+..
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~--~~A~~~l~~~~~~~~~~~~--~~~~v~~e~akllw~------~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNF--QLALSALNRLFQLNPSSES--LLPRVFLEYAKLLWA------QGEQEEAIQKLREL 210 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCc--HHHHHHHHHHhccCCcccC--CCcchHHHHHHHHHH------cCCHHHHHHHHHHH
Confidence 3666677778888888889988 8899888887664322222 144556666788888 88889999999888
Q ss_pred HH-HHHh---------------------------hcCHHHHHHHHHHHHHHHHhc
Q 002424 862 SE-ELQV---------------------------LEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 862 ~~-~f~~---------------------------l~~~~~~~~vl~~lA~l~~~l 888 (924)
+. .+.. -......++++..+|......
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 77 3332 223456677777777777777
No 322
>PRK12798 chemotaxis protein; Reviewed
Probab=54.13 E-value=4.1e+02 Score=30.91 Aligned_cols=158 Identities=15% Similarity=0.012 Sum_probs=95.7
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------------
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--------------- 739 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--------------- 739 (924)
.+..-+-..|..++.++.-+++ -...+=.++.+...+....|+.+.+..+..+.+..++.
T Consensus 158 l~~~~dP~~Al~~lD~aRLlaP-----GTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~ 232 (421)
T PRK12798 158 LMVATDPATALKLLDQARLLAP-----GTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLV 232 (421)
T ss_pred HhcccCHHHHHHHHHHHHHhCC-----chHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 3455566666666665544333 11223334444555556666666666555554433321
Q ss_pred -----------------cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC
Q 002424 740 -----------------FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP 802 (924)
Q Consensus 740 -----------------~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~ 802 (924)
.=++..+..+.+.+|.--.-.|+.+.|..-..+|+.++...+-+...+......+. +..
T Consensus 233 ~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~----v~s 308 (421)
T PRK12798 233 VRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAAL----VAS 308 (421)
T ss_pred HhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHc----cCc
Confidence 01233334467777777788888888888888888888554444444444443333 233
Q ss_pred ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 803 NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 803 ~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
..+++|++-+.++=+--+.-.|+.+.--++.....+...
T Consensus 309 ~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA~~va~~V~~~ 347 (421)
T PRK12798 309 DDAESALEELSQIDRDKLSERDRALLEAARSVARQVRRA 347 (421)
T ss_pred ccHHHHHHHHhcCChhhCChhhHHHHHHHHHHHHHHhcC
Confidence 334888888888888888888888888887777665554
No 323
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=53.39 E-value=1.5e+02 Score=32.46 Aligned_cols=129 Identities=10% Similarity=-0.069 Sum_probs=81.3
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA-ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~-~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+.+....|+..+.+++. +.....+++...|.+-.. .++...|...++.++..+... ...++.
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~~~~~~ 75 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------PDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------HHHHHH
T ss_pred HHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------HHHHHH
Confidence 33455559999999999875 333456777888888666 566666999999999865432 334444
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
-...+...|+...|..++.+++... ......-.+.......-...|+. +....+.+++....-+
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~~iw~~~i~fE~~~Gdl--~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSL---PKEKQSKKIWKKFIEFESKYGDL--ESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTS---SCHHHCHHHHHHHHHHHHHHS-H--HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhhh
Confidence 4455568899999999999987652 11111122333344455567876 7777777776665443
No 324
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.39 E-value=1.6e+02 Score=34.07 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch------HHHHHHHhhHHHHHHH---cC-------CHHHHHHHHHH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS------RILLLKLQLLHERSLH---RG-------HLKLAQKVCDE 690 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~------~~~~l~l~l~~~~al~---~G-------~~~~A~~~l~~ 690 (924)
.++.-|.+......|++|+.+|-+|.+.|..-..- .+.++.+-+. ..+++ .- ++..|...+..
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIV-WCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIV-WCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchh-heehhhcccccCChHHHHHHHHHHhhhh
Confidence 35666777788889999999999999998642210 0122222211 11111 11 22333333321
Q ss_pred -----HhhhhhccCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH--------H
Q 002424 691 -----LGVMASSVTG--VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA--------E 755 (924)
Q Consensus 691 -----ll~l~~~~~~--~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la--------~ 755 (924)
+..++.--++ ..........+..|-+....|+-++|.+.++.+-....+..........++.+| -
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRla 323 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLA 323 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHH
Confidence 1112111121 123344556678888899999999999999988665554333332222222211 1
Q ss_pred HHHhcCChhhhHHHHH
Q 002424 756 IHKKSGNAVLGIPYAL 771 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~ 771 (924)
+....|+.+.|..++.
T Consensus 324 LRsc~g~Vd~AvqfI~ 339 (568)
T KOG2561|consen 324 LRSCNGDVDSAVQFII 339 (568)
T ss_pred HHhccccHHHHHHHHH
Confidence 2346678888876664
No 325
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.02 E-value=3.3e+02 Score=33.06 Aligned_cols=154 Identities=17% Similarity=0.068 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL-----AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 754 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~-----~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la 754 (924)
+...|...++.+... + ...+....+.++. ...|.+.|+.+++.+.....+ ....+...++..+|
T Consensus 227 ~~~~a~~~~~~~a~~----g------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~-~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----G------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK-AATKGLPPAQYGLG 295 (552)
T ss_pred hhhHHHHHHHHHHhh----c------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH-HHhhcCCccccHHH
Confidence 456666777766552 2 4455666666654 346999999999988762110 01111233677888
Q ss_pred HHHHhcC-----ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHhHHHhhCCHHH
Q 002424 755 EIHKKSG-----NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGP--NHAKMASNLIQQALPLILGHGGLEL 827 (924)
Q Consensus 755 ~i~~~~G-----~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~--~~~~~Al~lLe~aLp~vl~~gd~~~ 827 (924)
.+|.+-. ++..|+.++.+|. ..|.+ .+...||.++. .|. ....+|..++..+. ..|+
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA----~~g~~----~a~~~lg~~~~-~g~~~~d~~~A~~yy~~Aa----~~G~--- 359 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAA----ELGNP----DAQYLLGVLYE-TGTKERDYRRAFEYYSLAA----KAGH--- 359 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHH----hcCCc----hHHHHHHHHHH-cCCccccHHHHHHHHHHHH----HcCC---
Confidence 8888755 4455777766554 44444 56677888876 444 12368999888773 2333
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
..|.+.+|.|+... .+...+...|..++.+|.+
T Consensus 360 -~~A~~~la~~y~~G--~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 360 -ILAIYRLALCYELG--LGVERNLELAFAYYKKAAE 392 (552)
T ss_pred -hHHHHHHHHHHHhC--CCcCCCHHHHHHHHHHHHH
Confidence 56788899999985 3335667888888888765
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.63 E-value=81 Score=25.49 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
++++.++..+.+.|+|++|.+.++.+|+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46778888899999999999999999874
No 327
>COG3903 Predicted ATPase [General function prediction only]
Probab=49.15 E-value=2.9e+02 Score=32.07 Aligned_cols=90 Identities=9% Similarity=-0.111 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.....+..+......|+.......++.-+......|.....-+-+.+.+......|....|....-++.--..+++-+|.
T Consensus 231 ~ws~~lLtgwe~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 231 DWSYALLTGWERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred hhhhHhhhhHHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 34455566666677777777777777766666666777656666777888888888888888888888887777777777
Q ss_pred HHHHHHHHHH
Q 002424 786 KASATLTLAE 795 (924)
Q Consensus 786 ~A~al~~La~ 795 (924)
.++....-+.
T Consensus 311 laeL~r~~e~ 320 (414)
T COG3903 311 LAELHRSGEA 320 (414)
T ss_pred HHHHHhhhHH
Confidence 7775553333
No 328
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=48.18 E-value=1.4e+02 Score=32.93 Aligned_cols=87 Identities=18% Similarity=0.068 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+....++-.++-.+...|+++.+...+++..+.-|-. ...|. +++ ..+...|+...|...|+++..+..+--+.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~---~lm-~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD--EPAYL---RLM-EAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHH---HHH-HHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 3557888899999999999999999999877654321 11222 222 68889999999999999998854433445
Q ss_pred CcchHHHHHHHHH
Q 002424 702 DMDLKTEASLRHA 714 (924)
Q Consensus 702 D~~~~a~a~~~~a 714 (924)
+|..+....+..+
T Consensus 224 ~P~~~~~~~y~~~ 236 (280)
T COG3629 224 DPAPELRALYEEI 236 (280)
T ss_pred CccHHHHHHHHHH
Confidence 6665555555444
No 329
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.79 E-value=6.4e+02 Score=31.28 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKI 650 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~ 650 (924)
+.+....+..++|-.++..-.+++|.+.+..
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667778899999999988889999887764
No 330
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.83 E-value=3.8e+02 Score=30.72 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=90.7
Q ss_pred hhhHHHHHHHHHHhhCchHHHHhH-HHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH
Q 002424 584 VGSSYLLRATAWEAYGSAPLTRVN-TLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR 662 (924)
Q Consensus 584 ~g~~~~l~a~~W~~~G~~~ls~~~-~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~ 662 (924)
..+++..--..|..+|. .+-... ..+ -..+.+....+..-...--+++++.++|-++-|..+..++...-+ ..+.+
T Consensus 77 l~~~~K~~h~s~sk~~K-~ldk~~~~di-~~~~~~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~-~~~~~ 153 (394)
T KOG2817|consen 77 LASTHKDLHGSLSKFGK-ALDKNFNPDI-SSVYRNSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSED-ESKSR 153 (394)
T ss_pred HHHHHHHHHHHHHHHHH-HHhhccCcch-hhHhhcCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCc-chhhh
Confidence 44566667778888888 333332 232 222334444444444567788899999999999999888764322 12222
Q ss_pred HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHH
Q 002424 663 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS--EAAAVAHSLFC 735 (924)
Q Consensus 663 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~--eAl~~l~~aL~ 735 (924)
...+.++.. .-+++.|+..-|.+++..-..- +...+..+++.....+-.-.++.|... +|+.+...-.+
T Consensus 154 ~~F~el~~I-v~~lke~Dl~~aLeWa~~~~~~---L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~ 224 (394)
T KOG2817|consen 154 TEFVELNQI-VEALKERDLEPALEWAESNRQK---LKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFA 224 (394)
T ss_pred hhHHHHHHH-HHHHHhccchhHHHHHHHhhhh---hccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcC
Confidence 233333322 5778999999999999875431 222234456666666666667788777 99988875544
No 331
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=46.04 E-value=41 Score=25.20 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
.+...+|++-+..++|++|++-+.+++.+..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999987554
No 332
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=45.82 E-value=64 Score=24.42 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHH
Q 002424 306 LILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLH 343 (924)
Q Consensus 306 ~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh 343 (924)
+.++.++..+|+++....-.-|. -..||...|++.|-
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~-~~~~~ve~ai~~LL 39 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQ-ANNGDVEAAIDALL 39 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHH-HTTTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 46788889999998655544444 48899999999874
No 333
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=45.52 E-value=56 Score=24.84 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHH
Q 002424 305 ELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLH 343 (924)
Q Consensus 305 ~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh 343 (924)
...++.++..+|+++....-.-|.. +.||...|++.|-
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~-~~g~ve~~i~~LL 40 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEA-NNGNVEATINNLL 40 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 3467888889999997666566665 8899999999884
No 334
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.26 E-value=1.1e+02 Score=35.32 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=74.9
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 612 ATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 612 ~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
+..+.+...-|..-+++-.+|.++...|.++.|+..+-++..--. ...+ ...++++.. .+.+..|+|..-......+
T Consensus 137 Lk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCT-s~kh-vInm~ln~i-~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 137 LKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCT-SAKH-VINMCLNLI-LVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhc-chHH-HHHHHHHHH-HHHHhhcchhhhhhHHHHH
Confidence 445777777788889999999999999999999999887554322 2221 223344443 7889999999888888777
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHS 732 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~ 732 (924)
.+-...-...-+...+.+...-|...+..+.|..|...+-.
T Consensus 214 ~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 214 ESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLL 254 (466)
T ss_pred HhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65310000000111223344445555566688888776643
No 335
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=45.04 E-value=16 Score=26.40 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHhCChHHHHH
Q 002424 370 YEIALLCLGMMHFHFGHPKQALD 392 (924)
Q Consensus 370 ~~yall~la~~h~~fg~~~~A~~ 392 (924)
...|..|||.++...|++++|++
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 45689999999999999999963
No 336
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.51 E-value=2e+02 Score=31.57 Aligned_cols=63 Identities=16% Similarity=0.004 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHHHHHc-ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAA-AVAHSLFCMCYKF-NLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl-~~l~~aL~~~~~~-gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
+++.+....+.-+..+ .+++.++....+. +-+.+...++..+|..+..-+++.+|..++..+-
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~ 154 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSE 154 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcC
Confidence 3344443333333333 5566677776665 6678889999999999999999999999987553
No 337
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=43.86 E-value=3.5e+02 Score=31.47 Aligned_cols=108 Identities=21% Similarity=0.100 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC---c----hH--H----HHHHHhhHHHHHHHcCCHHHHHH
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS---K----SR--I----LLLKLQLLHERSLHRGHLKLAQK 686 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~---~----~~--~----~~l~l~l~~~~al~~G~~~~A~~ 686 (924)
..|..+.+..+=|..+.++|.|..|...+..|++...... . +. + -.++..+. ..++..++.+.|..
T Consensus 171 qiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv-~CYL~~rkpdlALn 249 (569)
T PF15015_consen 171 QIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLV-TCYLRMRKPDLALN 249 (569)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHH-HhhhhcCCCchHHH
Confidence 4677788888888888999999999988888887643221 1 11 1 12333333 68889999999999
Q ss_pred HHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 687 VCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 687 ~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
+..+...+-+. .+.-.++.+.+..++.+|.+|.+...-+.-.
T Consensus 250 h~hrsI~lnP~--------~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 250 HSHRSINLNPS--------YFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHhhhhhcCcc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776332 4566788888999999999999877655433
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=42.77 E-value=1.3e+02 Score=30.97 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHH-cccchhHHHHHHHHHHHHHhcCCh----hhhHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQF---SEAAAVAHSLFCMCYK-FNLQVENASVLLLLAEIHKKSGNA----VLGIPYALASLSFCQ 778 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~---~eAl~~l~~aL~~~~~-~gd~~~~a~al~~la~i~~~~G~~----~~Al~~l~~AL~la~ 778 (924)
++.+++=|..++.+.++ .++.+++++++.-.++ +.......+++..+|.+|...|.. .+|-.++.+|.....
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 56666666666666544 4466666666554433 222344467888888888766543 355566665555543
No 339
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=42.26 E-value=1e+02 Score=39.63 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=65.0
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHH-HHHHHcCC---HHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLH-ERSLHRGH---LKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~-~~al~~G~---~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
+......|+.|+..+++....||......-...+.++.. +.+-..|+ +++|..-++.+.. ..+...-
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 554 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG---------GVGAPLE 554 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC---------CCCCchH
Confidence 344566799999999999999997766443333322211 56666666 5555555554433 2335566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
.+.+|.++.+.|+|+|=++.+.-++..
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 888999999999999999999888763
No 340
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=42.17 E-value=6.4e+02 Score=29.73 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHHhhccCch--HH--HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 625 ALAHVKLIQHLAVFKG-YKEAFSALKIAEEKFLSVSKS--RI--LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~-y~eA~~~L~~a~~~f~~~~~~--~~--~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+.-+.+-|-.+|..|. =+.|+.+|+.++ .|..+.-. .. ..++ +. +..++....++.-..+-.-+-. ..+.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il-~ft~yD~ec~n~v~~fvK-q~-Y~qaLs~~~~~rLlkLe~fi~e--~gl~ 453 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLIL-QFTNYDIECENIVFLFVK-QA-YKQALSMHAIPRLLKLEDFITE--VGLT 453 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHH-HhccccHHHHHHHHHHHH-HH-HHHHHhhhhHHHHHHHHHHHHh--cCCC
Confidence 4456778889999998 677888888776 44433210 00 1111 00 0122222222111111110100 0111
Q ss_pred CCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 700 GVDM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 700 ~~D~-~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
+.+. +....--+.-|+++...|+|..+.-.-..+.+.+ + ..++..++|.+.....+|.+|..++.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia-----P--S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA-----P--SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C--cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1121 1112223456788999999999999888776642 2 46778888888999999999988773
No 341
>PF12854 PPR_1: PPR repeat
Probab=41.74 E-value=46 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIA 651 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a 651 (924)
..++..|...+++.|+.++|.+++++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 467788888999999999999988753
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=41.68 E-value=45 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHH
Q 002424 374 LLCLGMMHFHFGHPKQALDVLTEAVCL 400 (924)
Q Consensus 374 ll~la~~h~~fg~~~~A~~~l~Eai~~ 400 (924)
+..||.-|+..|+|++|+.+.+..+++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456899999999999999988876554
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.12 E-value=3e+02 Score=33.34 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=39.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
|++.+++ +.+..|+++.|.+...++-. ..-+..+|.+.+..|+...|-+++.+|-.+.
T Consensus 639 D~d~rFe-------lal~lgrl~iA~~la~e~~s-----------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 639 DPDQRFE-------LALKLGRLDIAFDLAVEANS-----------EVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred Chhhhhh-------hhhhcCcHHHHHHHHHhhcc-----------hHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 6666665 34577888888887765533 2235567888888888888887777665543
No 344
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.65 E-value=4.6e+02 Score=27.00 Aligned_cols=143 Identities=13% Similarity=0.013 Sum_probs=93.2
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch-hHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV-ENASVLLLLA 754 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~-~~a~al~~la 754 (924)
-..|..++|...+..+.. ...+. =...++++.+-++...|+..+|+..+.++-.... -+. ++=-+.+.-|
T Consensus 69 A~~~k~d~Alaaf~~lek--tg~g~----YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa 139 (221)
T COG4649 69 AQENKTDDALAAFTDLEK--TGYGS----YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAA 139 (221)
T ss_pred HHcCCchHHHHHHHHHHh--cCCCc----chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHH
Confidence 367888899988888866 22221 2568899999999999999999999998754221 111 1112334445
Q ss_pred HHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHH
Q 002424 755 EIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 834 (924)
Q Consensus 755 ~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~ 834 (924)
.++.-.|.|+.--+.+. .++- --..++..++--||..-..-|+. ..|...++++..-...-.+...+|++.+-
T Consensus 140 ~lLvD~gsy~dV~srve---pLa~--d~n~mR~sArEALglAa~kagd~--a~A~~~F~qia~Da~aprnirqRAq~mld 212 (221)
T COG4649 140 YLLVDNGSYDDVSSRVE---PLAG--DGNPMRHSAREALGLAAYKAGDF--AKAKSWFVQIANDAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHhccccHHHHHHHhh---hccC--CCChhHHHHHHHHhHHHHhccch--HHHHHHHHHHHccccCcHHHHHHHHHHHH
Confidence 55667787755433322 2221 12334445555666666778987 99999999999866655566666666543
No 345
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.86 E-value=2.9e+02 Score=29.50 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhhhcCCC---CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPS---FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~---~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
-..+|+.|-.+|..++.+.+ ....+++..|+.+|++|.+...++|-.....++-..
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~ 223 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERR 223 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 34677778888887764211 112577889999999999999999988877665443
No 346
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.60 E-value=7e+02 Score=28.81 Aligned_cols=149 Identities=10% Similarity=-0.095 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-chHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhcc
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~ 698 (924)
.+-....-...+..++.+++|..|.++++++..+..+-. ..++.... +..+ ..++.+-++.+|...++..+. ..
T Consensus 126 ~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~-y~~WD~fd~~~A~~~L~~~~~--~~- 201 (380)
T TIGR02710 126 YNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRA-YLHWDRFEHEEALDYLNDPLP--ER- 201 (380)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHH-HHHHHccCHHHHHHHHhhccc--hh-
Confidence 344445556667778899999999999999997743211 12222222 1111 577889999999999985322 10
Q ss_pred CCCCcchHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHcccch-hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 699 TGVDMDLKTEASLRHA-RTLLAANQFSEAAAVAHSLFCMCYKFNLQV-ENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a-~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~-~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+ ....+..... ..+......-.+.....++. .+.....+. .-..-+..-|......|+|+.|+-.+-+++++
T Consensus 202 ---~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 202 ---L--ALYQVTSHDELEDVIKRNASILPEIIGSRNG-RREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred ---h--hhhhhhhhhHHHHHHHhHHhhcchhhhccch-hhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 0111111100 00000000000110000000 111111111 12334555566677999999999999999998
Q ss_pred HHH
Q 002424 777 CQL 779 (924)
Q Consensus 777 a~~ 779 (924)
.-+
T Consensus 276 ~~q 278 (380)
T TIGR02710 276 IVQ 278 (380)
T ss_pred HHH
Confidence 864
No 347
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=37.19 E-value=3.2e+02 Score=27.25 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCch----------------------------H-H-------HHHHHhh
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKS----------------------------R-I-------LLLKLQL 670 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~----------------------------~-~-------~~l~l~l 670 (924)
.....|+.....|+.++|...+++|...+...... . . .++. .
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~--~ 81 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIK--T 81 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHH--H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHH--H
Confidence 34566777778899999999999888766432110 0 0 1111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
....+..|+...|.+.+..+..=..-....=|..........+.-++..|+|.+|-..+..++.
T Consensus 82 -a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 -ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp -HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1678899999999998887654100000001666778888999999999999999999998875
No 348
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.02 E-value=2.3e+02 Score=32.93 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=49.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 740 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~ 740 (924)
+.+...|||..|...++.+----..+-...+.......+..|-.++-++||.+|.+.+...+....+.
T Consensus 130 Rvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788999999988877442210111111355677888999999999999999999999998755443
No 349
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=36.94 E-value=11 Score=45.35 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++..|..++.++.. ..+ .+....+..+..+++....|++.+|++.+... .. .. -......+.+..
T Consensus 32 ~a~l~~g~~~~A~~ll~~l~~--~~L---~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~-~~-l~~~~~~~~~~l 103 (536)
T PF04348_consen 32 RALLQEGDWAQAQALLNQLDP--QQL---SPSQQARYQLLRARLALAQGDPEQALSLLNAQ-DL-WQ-LPPEQQARYHQL 103 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCCHHHHHHHHHhccc--ccC---ChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC-Cc-cc-CCHHHHHHHHHH
Confidence 677899999999999998874 222 23447788899999999999999999999742 11 01 123345667788
Q ss_pred HHHHHHhcCChhhhHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALA 772 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~ 772 (924)
+|.++...|++-.|...+.+
T Consensus 104 ~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 104 RAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp --------------------
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 99999999999877665543
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=36.28 E-value=1.3e+02 Score=26.99 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
-..+.+.++..++..|++++|++.+-+++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467777777777777777777776666554
No 351
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=34.80 E-value=1e+02 Score=24.67 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCchHHHHHHHHhhhhcCcHHHHHHHHHhh
Q 002424 315 APELHRVHFLRYLNSLYHDDYFAALENLHRY 345 (924)
Q Consensus 315 ~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~y 345 (924)
.+..+...+++||-+ |..|+..|++-|..|
T Consensus 26 ~~~~~d~~llRFLRA-Rkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 26 KEDHDDNFLLRFLRA-RKFDVEKAFKMLKKT 55 (55)
T ss_dssp TSS-SHHHHHHHHHH-TTT-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH-ccCCHHHHHHHHHhC
Confidence 344567899999998 999999999988764
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=34.10 E-value=2.6e+02 Score=29.24 Aligned_cols=82 Identities=15% Similarity=-0.028 Sum_probs=58.1
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
+.+-.-.+|...+-++..- +.+. .++..+.+|-++. .-|...|+.++..+++... ++......++..+|.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~-~~l~------t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~--~~~~~n~eil~sLas 186 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGT-PELE------TAELQYALATYYT-KRDPEKTIQLLLRALELSN--PDDNFNPEILKSLAS 186 (203)
T ss_pred hhccCcHHHHHHHHHHcCC-CCCC------CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHH
Confidence 3443335566666555441 2222 4677778888876 6789999999999998765 343566888999999
Q ss_pred HHHhcCChhhhH
Q 002424 756 IHKKSGNAVLGI 767 (924)
Q Consensus 756 i~~~~G~~~~Al 767 (924)
++.+.|+++.|-
T Consensus 187 ~~~~~~~~e~AY 198 (203)
T PF11207_consen 187 IYQKLKNYEQAY 198 (203)
T ss_pred HHHHhcchhhhh
Confidence 999999998774
No 353
>PRK12798 chemotaxis protein; Reviewed
Probab=33.87 E-value=8.2e+02 Score=28.53 Aligned_cols=211 Identities=16% Similarity=0.068 Sum_probs=135.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.++...|+-.+|...+...... ..++..-...-+-.+. ++..-|...|+++++++--.+- |.-..++ ++..
T Consensus 120 ~laY~~Gr~~~a~~~La~i~~~-----~l~~~lg~~laLv~a~-l~~~~dP~~Al~~lD~aRLlaP--GTLvEEA-ALRR 190 (421)
T PRK12798 120 ALAYLSGRGREARKLLAGVAPE-----YLPAELGAYLALVQGN-LMVATDPATALKLLDQARLLAP--GTLVEEA-ALRR 190 (421)
T ss_pred HHHHHcCCHHHHHHHhhcCChh-----hcCchhhhHHHHHHHH-HhcccCHHHHHHHHHHHHHhCC--chHHHHH-HHHH
Confidence 4667899999999888766552 1234444444444444 3567799999999998743322 2222222 3444
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
--.|-...|+.+++..+. ....+++....+...-...++.+...++.. . -. +-+.-++..-++..+-..|
T Consensus 191 si~la~~~g~~~rf~~la---~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~--~-~~----~~l~~~ls~~d~~~q~~lY 260 (421)
T PRK12798 191 SLFIAAQLGDADKFEALA---RNYLRRFRHSPYASQFAQRFVDLVVRLDDE--I-RD----ARLVEILSFMDPERQRELY 260 (421)
T ss_pred hhHHHHhcCcHHHHHHHH---HHHHHHhccCchHHHHHHHHHHHHHhcccc--c-cH----HHHHHHHHhcCchhHHHHH
Confidence 444556889998887775 466677777777777777777777766643 1 11 2255556677888888899
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------HHhcC----------CHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIV--------FDKLG----------RLAER 894 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l--------~~~lG----------d~~~r 894 (924)
..+||.-+- .|..+-|.-.-++|+.+..........+..|...+.+ ...++ |....
T Consensus 261 L~iAR~Ali------~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll 334 (421)
T PRK12798 261 LRIARAALI------DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALL 334 (421)
T ss_pred HHHHHHHHH------cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHH
Confidence 999988877 7899999999999998875544444444444333322 11111 23334
Q ss_pred HHHHHHHHHHHHhh
Q 002424 895 EEAAALFKEYVLAL 908 (924)
Q Consensus 895 ~~aa~~f~~l~~~~ 908 (924)
+.+..+.+++..++
T Consensus 335 ~AA~~va~~V~~~p 348 (421)
T PRK12798 335 EAARSVARQVRRAP 348 (421)
T ss_pred HHHHHHHHHHhcCc
Confidence 45666777777766
No 354
>PRK10941 hypothetical protein; Provisional
Probab=33.79 E-value=1.4e+02 Score=32.60 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=53.4
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+......+.++-..+++.++++.|+++.+.++...- +...+ ..-+|.+|.+.|.+..|...+..-++.|
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P---~dp~e---~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP---EDPYE---IRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC---CCHHH---HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 344556677788888999999999999999988532 22222 3358888999999999999988777766
No 355
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.56 E-value=6.2e+02 Score=29.54 Aligned_cols=130 Identities=10% Similarity=-0.001 Sum_probs=75.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCC----cchHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVD----MDLKTEAS------LRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 742 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D----~~~~a~a~------~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd 742 (924)
...+++++|..|...+..++.+.+.....+ +...-.+. -.++.++++.++.+-|+....+.+.+
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l------ 257 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL------ 257 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc------
Confidence 567788899999888888888765332111 11111111 24566777788888887777766553
Q ss_pred chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 002424 743 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ 814 (924)
Q Consensus 743 ~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~ 814 (924)
.....+-++..|.++....+|.+|-.-++-|.-+.+-.|-...+...+ +-..|+++ . ++|+...+.
T Consensus 258 nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~l--IklyWqam--i--EeAiTr~es 323 (569)
T PF15015_consen 258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKL--IKLYWQAM--I--EEAITRAES 323 (569)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHH--HHHHHHHH--H--HHHHhcccc
Confidence 233355566667777777777777666666666666555433333331 23334333 2 555555444
No 356
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.70 E-value=4.9e+02 Score=31.63 Aligned_cols=135 Identities=15% Similarity=0.058 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH-----hcCChhhhHHHHHHHHH---HHHHhCCcHHHHHHHHHH
Q 002424 722 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK-----KSGNAVLGIPYALASLS---FCQLLNLDLLKASATLTL 793 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~-----~~G~~~~Al~~l~~AL~---la~~~g~~~~~A~al~~L 793 (924)
+..+|..+++.+.. .+.+.+...+|.++. ...+++.|+.++..|.. .+...+. ..+...|
T Consensus 227 ~~~~a~~~~~~~a~--------~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~l 294 (552)
T KOG1550|consen 227 ELSEAFKYYREAAK--------LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGL 294 (552)
T ss_pred hhhHHHHHHHHHHh--------hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHH
Confidence 45567777765544 233555556666664 34677899999988877 2333332 2366778
Q ss_pred HHHHHHcCCC---hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 794 AELWLSFGPN---HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 794 a~l~~~lG~~---~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
|.++..-... ....|+.++..+. ..|. -.+.+.||.|+.... ...+..+|..++..|..
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA----~~g~----~~a~~~lg~~~~~g~---~~~d~~~A~~yy~~Aa~------- 356 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAA----ELGN----PDAQYLLGVLYETGT---KERDYRRAFEYYSLAAK------- 356 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHH----hcCC----chHHHHHHHHHHcCC---ccccHHHHHHHHHHHHH-------
Confidence 8888764322 1256777776663 3344 347778899999843 12456677777777743
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002424 871 HELAAEAFYLIAIVFDK 887 (924)
Q Consensus 871 ~~~~~~vl~~lA~l~~~ 887 (924)
.+..++.+.+|..|..
T Consensus 357 -~G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 357 -AGHILAIYRLALCYEL 372 (552)
T ss_pred -cCChHHHHHHHHHHHh
Confidence 3455566666665553
No 357
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=32.69 E-value=1.2e+03 Score=29.94 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=61.9
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...++|..|++.+...+..+|..... .+++ ....++.|+.++|..+++....+ .+.| -..+--+-.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a--~vLk----aLsl~r~gk~~ea~~~Le~~~~~----~~~D----~~tLq~l~~ 85 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYA--KVLK----ALSLFRLGKGDEALKLLEALYGL----KGTD----DLTLQFLQN 85 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHH--HHHH----HHHHHHhcCchhHHHHHhhhccC----CCCc----hHHHHHHHH
Confidence 34678889999988888887743321 2222 14667999999999888877653 2223 244556677
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~ 735 (924)
++..+|.+++|..+++.+..
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHh
Confidence 88999999999999999876
No 358
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=32.10 E-value=1e+02 Score=26.94 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+..++.++..|.-.-..|+|++|+..+.++.+.|.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 55677888888888899999999999999998875
No 359
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.86 E-value=7.9e+02 Score=27.70 Aligned_cols=109 Identities=17% Similarity=0.061 Sum_probs=72.1
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH-HhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI-LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v-l~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
+...+.-..+..+..||.+|..-++. +.|-..|..+---- ..--+...+...+.-+||.|+. .++..+|-.
T Consensus 94 rvisfeEqv~~irl~LAsiYE~Eq~~--~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe------~~d~veae~ 165 (399)
T KOG1497|consen 94 RVISFEEQVASIRLHLASIYEKEQNW--RDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLE------DDDKVEAEA 165 (399)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHh------cCcHHHHHH
Confidence 55556667778889999999988876 77776665441111 2223667788889999999999 677888888
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHH
Q 002424 857 PLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAER 894 (924)
Q Consensus 857 ~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r 894 (924)
+..+|-=.-........+-+--.--|++.+..|..-++
T Consensus 166 ~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEA 203 (399)
T KOG1497|consen 166 YINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEA 203 (399)
T ss_pred HHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877544443344444444444456666666665553
No 360
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=31.60 E-value=1.2e+02 Score=39.00 Aligned_cols=99 Identities=15% Similarity=-0.027 Sum_probs=71.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..-+....|+.|...+++...-|+. +.---++.++.|..++.+-.-..--+.+.+++..+....+..+.--=.+.
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPG-----RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCC-----cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 4556677899999999998886652 22245788888888766543333336677777777766666666666889
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
+|.||.+.|++.+-+..+.-|+..
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~ 581 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKR 581 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999888777655543
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=31.27 E-value=3.6e+02 Score=26.53 Aligned_cols=67 Identities=16% Similarity=0.125 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQF---SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~---~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
..+..++.++.+....+- .+.+.++++.+. ...+.....++..+|--|.+.|+|++++.++...++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 567888899988776654 445555555553 3566677788999999999999999998887655443
No 362
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.11 E-value=1.1e+02 Score=27.44 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 745 ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 745 ~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
....+...+|..+...|+++.|+..+.+.+...+..++...+...+-.+..+-
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 34578888999999999999999999887777766666555544444444433
No 363
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.00 E-value=7.7e+02 Score=27.36 Aligned_cols=119 Identities=13% Similarity=-0.026 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCC
Q 002424 764 VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDP 843 (924)
Q Consensus 764 ~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~ 843 (924)
+.-+..+.+++.-..+-+-....++|..++|+-|+++|+. +.+.+.+.+.+......|-..+. ++.-+|..+-
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~--~ng~~~~~~~~~~a~stg~KiDv---~l~kiRlg~~-- 164 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDI--QNGFEWMRRLMRDAMSTGLKIDV---FLCKIRLGLI-- 164 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhcccchhh---HHHHHHHHHh--
Confidence 3446666777777777666788889999999999999999 99999999999998888765543 3333333333
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 844 SFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 844 ~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
-|+..-+-+.++.+-.++++-+|-.+.-+--..+|..........+
T Consensus 165 ----y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFke 210 (412)
T COG5187 165 ----YGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKE 210 (412)
T ss_pred ----hccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHH
Confidence 3445556667777777777777755555544445544444444433
No 364
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.78 E-value=6.5e+02 Score=29.23 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=68.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al 750 (924)
.-+...|+++.|...|.++...... .........+...+-+..|+|..=+....++.....+. --+...+++-
T Consensus 158 dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 158 DHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 6677799999999999998876442 23467888899999999999999999999887753110 0111124455
Q ss_pred HHHHHHHHhcCChhhhHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~ 771 (924)
+..|.+++..+.+..|..++.
T Consensus 233 C~agLa~L~lkkyk~aa~~fL 253 (466)
T KOG0686|consen 233 CAAGLANLLLKKYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666667777778887777664
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=29.88 E-value=8e+02 Score=27.16 Aligned_cols=130 Identities=9% Similarity=-0.027 Sum_probs=86.3
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccC-----chH--HHHHHHhhHH-HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVS-----KSR--ILLLKLQLLH-ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~-----~~~--~~~l~l~l~~-~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
+.-.-+|..|+++.++..+...... +.+ .+..++.+.+ ...-..|+|.++....-+=-.. .. ...
T Consensus 45 LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~---pE----klP 117 (309)
T PF07163_consen 45 LVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV---PE----KLP 117 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC---cc----cCC
Confidence 3445578889999998888763321 111 2223333222 4555799999998877665442 11 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
+.+.-.=+.+|...|++.+.++....-|..-...+.+.-..-+-+-+-.|..-.|...+|.+...
T Consensus 118 pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 118 PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 67777777888999999999999988877544333444445566666778889999999988773
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=29.83 E-value=1.6e+02 Score=30.19 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHh---hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 787 ASATLTLAELWLSFGPN-HAKMASNLIQQALPLILG---HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 787 A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl~---~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
+.++.+-|.+++.+.+. ...++.+++++++.-..+ ... ....|+..+|.++...+- ...+..+|-+++++|.
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~--l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP--NKHDALWCLGNAYTSLAF--LTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHH--H---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHh--hcCChHHHHHHHHHHH
Confidence 55555566555554332 113455555555443322 222 233455556655554111 1345667888888888
Q ss_pred HHHHhhcC
Q 002424 863 EELQVLED 870 (924)
Q Consensus 863 ~~f~~l~~ 870 (924)
..|++.-+
T Consensus 101 ~~FqkAv~ 108 (186)
T PF06552_consen 101 EYFQKAVD 108 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88875433
No 367
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.78 E-value=1.7e+02 Score=24.38 Aligned_cols=55 Identities=20% Similarity=0.021 Sum_probs=35.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAV 729 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~ 729 (924)
...+..|+|-+|.+.++.+-.-.+ ++.....+..+....+.++.++|+...|..+
T Consensus 7 ~~l~n~g~f~EaHEvlE~~W~~~~--~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 7 IELFNAGDFFEAHEVLEELWKAAP--GPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCCT---CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHcCCCHHHhHHHHHHHHHHCC--cchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 455678888888888887765211 1112333455566667777888888887765
No 368
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.51 E-value=1.1e+02 Score=20.97 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEE 653 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~ 653 (924)
.+..+...++..|+++.|..++++..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456677778888899998888887664
No 369
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=28.77 E-value=8.5e+02 Score=27.13 Aligned_cols=77 Identities=23% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 791 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 791 (924)
..+.-+...|..++|+..+++.+. .....+.++...+.+|.+....|.+.-|..++.+-...+.++++..++-.-..
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~---~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L~~ 294 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLA---QAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPALAL 294 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcc---cCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHHHH
Confidence 446667788899999998887544 23567888889999999999999999999999999988888888777665444
No 370
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=5.5e+02 Score=28.34 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---ccchhHHHHHHHHHHHHHhcCChhhhH-HHHHHHHHHHHHh-CC
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKF---NLQVENASVLLLLAEIHKKSGNAVLGI-PYALASLSFCQLL-NL 782 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~---gd~~~~a~al~~la~i~~~~G~~~~Al-~~l~~AL~la~~~-g~ 782 (924)
+..+.-+....+.++...|..++-..++..... .+..+.+ +++.+.-..+..+..+ ....+++..+.+. +-
T Consensus 47 eL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~a----nl~~ll~e~~~~eper~~~v~raikWS~~~~~~ 122 (312)
T KOG3024|consen 47 ELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVA----NLAELLGEADPSEPERKTFVRRAIKWSKEFGEG 122 (312)
T ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHH----HHHHHHhhcCCCccHHHHHHHHHHHHHhhcCCC
Confidence 334444455555555555555555444432220 0111112 2334444444444443 4556788887765 55
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
+++.......||..+..-+.. .+|+.++-
T Consensus 123 k~G~p~lH~~la~~l~~e~~~--~~a~~HFl 151 (312)
T KOG3024|consen 123 KYGHPELHALLADKLWTEDNV--EEARRHFL 151 (312)
T ss_pred CCCCHHHHHHHHHHHHhcccH--HHHHhHhh
Confidence 666667777788888877766 88888764
No 371
>PRK10941 hypothetical protein; Provisional
Probab=27.99 E-value=3e+02 Score=30.14 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=44.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
..++..+++..|..+.+.++.+.+ .| ..-..-+|.++..+|.+..|..-++.-++.|.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P----~d----p~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDP----ED----PYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCC----CC----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 577788889999888888888733 23 23355588888999999999988888888765
No 372
>PF13041 PPR_2: PPR repeat family
Probab=27.49 E-value=1.1e+02 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEK 654 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~ 654 (924)
.++..+-..+...|++++|.+++++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 56777888888999999999999988864
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=27.30 E-value=1.6e+03 Score=29.81 Aligned_cols=92 Identities=14% Similarity=0.024 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+-.-..+.--|.++...+.|++|.-.++.+-.. .-.+ ..+...|+|++|..+..++.. +
T Consensus 935 ~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl------------ekAl--~a~~~~~dWr~~l~~a~ql~~-----~- 994 (1265)
T KOG1920|consen 935 SEKQKVIYEAYADHLREELMSDEAALMYERCGKL------------EKAL--KAYKECGDWREALSLAAQLSE-----G- 994 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH------------HHHH--HHHHHhccHHHHHHHHHhhcC-----C-
Confidence 4444455555677788888888887776633221 1011 466789999999988887644 1
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLF 734 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL 734 (924)
.| -....-..++..+...|++-+|-+.+.+.+
T Consensus 995 ~d--e~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 995 KD--ELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HH--HHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 12 112222566777788888888888777654
No 374
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=26.75 E-value=1.1e+02 Score=21.37 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
.+++.||.++.... +...++.+|..++++|.+
T Consensus 2 ~a~~~lg~~~~~G~--g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 2 EAQYNLGQMYEYGL--GVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHHcCC--CCCcCHHHHHHHHHHHHH
Confidence 46788999988742 335688999999999864
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.33 E-value=3.4e+02 Score=29.33 Aligned_cols=89 Identities=17% Similarity=0.114 Sum_probs=65.3
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
-.+|++|...+-+|..+=|.... ++.=. ..-++.+.+|+.+..-+++++.+ |+ ..+.+.+-++..+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~--Y~tnr----alchlk~~~~~~v~~dcrralql-------~~-N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVAS--YYTNR----ALCHLKLKHWEPVEEDCRRALQL-------DP-NLVKAHYFLGQWL 88 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcch--hhhhH----HHHHHHhhhhhhhhhhHHHHHhc-------Ch-HHHHHHHHHHHHH
Confidence 44688888888877766553221 11111 04556788999999999999887 22 2678889999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHc
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKF 740 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~ 740 (924)
+....|++|+..+.++....+..
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcC
Confidence 99999999999999997776653
No 376
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=26.02 E-value=1.5e+02 Score=25.92 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+..+.-+...|.-.-..|+|++|+.++.++.+.|-
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45567778888888889999999999999998775
No 377
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.71 E-value=1.2e+02 Score=20.62 Aligned_cols=26 Identities=27% Similarity=0.147 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEE 653 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~ 653 (924)
+..+-..++..|++++|..++.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566667788888888888876654
No 378
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=25.54 E-value=1.2e+02 Score=25.28 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhH--HHHHHHHHHHHHhcCChhhhHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVEN--ASVLLLLAEIHKKSGNAVLGIPY 769 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~--a~al~~la~i~~~~G~~~~Al~~ 769 (924)
..+..+...|+|-+|.+.++++=..+ .++...- .-++...|..|.+.|++..|...
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~--~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAA--PGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT---CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHC--CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 45566788999999999999764311 1232222 33555666777889998777654
No 379
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.44 E-value=1.1e+02 Score=27.83 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Q 002424 370 YEIALLCLGMMHFHFGHPKQALDVLTEAVCLSQQ 403 (924)
Q Consensus 370 ~~yall~la~~h~~fg~~~~A~~~l~Eai~~Aqe 403 (924)
--|++.+++-==..|+++++|-+-+++=|..||+
T Consensus 49 G~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 49 GCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKA 82 (91)
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence 4578888888889999999999999999999985
No 380
>PRK06770 hypothetical protein; Provisional
Probab=25.23 E-value=1.6e+02 Score=29.97 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=41.1
Q ss_pred HhcC-CCCChHHHHHHHHHHHHHCCCch-HHHHHHHHhhhhcCcHHHHHHHHHhhhhccC
Q 002424 293 EKHG-SSFSLNAFELILRQLQKLAPELH-RVHFLRYLNSLYHDDYFAALENLHRYFDYSA 350 (924)
Q Consensus 293 ~~~~-~~~p~~~l~~~~~~~~~~~p~~~-~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~ 350 (924)
++-| ..+.++.++...+.+.. +++. ...|++-|+.|..|||..+++- |+||=+..
T Consensus 88 ~KwG~~~mT~enI~~l~~~i~~--sn~~~k~~yl~IL~RW~~GDFS~~Ved-HN~iW~~q 144 (180)
T PRK06770 88 EKWGFIEMTQENIEKLKDIINS--SNFVQKEELLAILERWEKGDFSKIVED-HNYLWKLQ 144 (180)
T ss_pred cccceEecCHHHHHHHHHHHhc--cchhhHHHHHHHHHHHhcCCcchHHHH-HHHHHHHc
Confidence 4445 36778888777776653 3344 6899999999999999888875 88887753
No 381
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=25.08 E-value=1.3e+02 Score=32.01 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=47.5
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
....||...|.+++.+++.++++ -+..+.+++.+....|+++.|.+.+++.+++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~--------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE--------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch--------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 45789999999999999998652 5677999999999999999999999999884
No 382
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=24.86 E-value=4.1e+02 Score=27.47 Aligned_cols=80 Identities=20% Similarity=0.061 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+..+...++..+++++.|...++.+-.......+...+.......|.+....|+...+.....+++.+.+..|....
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~ 206 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTL 206 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 45667777778888999999999998876554323355567778888888888999988888899999999887776543
No 383
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=24.47 E-value=8.8e+02 Score=29.19 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=63.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
+.++..|+...|..++.++-. .+ .+..+.+..+..+++.+...++.+|++.+...... .-.+...+|-+..
T Consensus 71 ~al~~e~k~~qA~~Ll~ql~~---~L---td~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~---~ls~~Qq~Ry~q~ 141 (604)
T COG3107 71 RALVEEGKTAQAQALLNQLPQ---EL---TDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPA---DLSQNQQARYYQA 141 (604)
T ss_pred HHHHHcCChHHHHHHHHhccc---cC---CHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchh---hcCHHHHHHHHHH
Confidence 677899999999999999863 22 34568888999999999999999999999876431 0111235677777
Q ss_pred HHHHHHhcCChhhhH
Q 002424 753 LAEIHKKSGNAVLGI 767 (924)
Q Consensus 753 la~i~~~~G~~~~Al 767 (924)
++.+....|+.-.|.
T Consensus 142 ~a~a~ea~~~~~~a~ 156 (604)
T COG3107 142 RADALEARGDSIDAA 156 (604)
T ss_pred HHHHHhcccchHHHH
Confidence 777777777664443
No 384
>PF12854 PPR_1: PPR repeat
Probab=24.29 E-value=1.2e+02 Score=21.67 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
......++..+.+.|+.++|.++++++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 355677888899999999999998864
No 385
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.27 E-value=1.2e+03 Score=33.27 Aligned_cols=111 Identities=15% Similarity=0.030 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh---
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--- 780 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~--- 780 (924)
...+++++..|++....|+++.|...+-.+.+ + + ...+.+.+|.+.+..|+...|+..+++.++++..-
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e-----~--r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKE-----S--R-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhh-----c--c-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 44789999999999999999999988877654 1 1 56788899999999999999999999999888532
Q ss_pred --------CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 781 --------NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 781 --------g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
.+-.....+.+.++.-....|..+-.+-+..+..+.....+.
T Consensus 1739 ~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1739 PYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred CccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 222333455665655555666654456666777776665533
No 386
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=23.80 E-value=1.6e+02 Score=26.65 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCCCCCcccHHHHHHHHHhhchhhhHHHHHHHHHHHh----cCC-ChhHHHHHHHHHHh
Q 002424 58 SCEDILEPKLDELINQLREIGDVLYQWLTDQLISRLS----SLS-SPDDLFNLFSDLRA 111 (924)
Q Consensus 58 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~ll~~L~----~i~-s~d~L~~f~~~l~~ 111 (924)
+++...+-+++.+...+...+ .+++.++++.. .|. .+.+|++|+++|..
T Consensus 13 r~esRT~~DYesv~e~megiC-----k~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L~D 66 (104)
T KOG1766|consen 13 RPESRTWGDYESVTECMEGIC-----KMYEEHLKKKNPSAPPITYDISQLFEFIDDLAD 66 (104)
T ss_pred CcccccccchHhHHHHHHHHH-----HHHHHHHHhcCCCCCCcceeHHHHHHHHHHHhh
Confidence 334445567888887776544 56778888772 254 88999999999886
No 387
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.57 E-value=5.4e+02 Score=27.46 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=64.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 630 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 630 ~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
+|..-+...-+|.+|.+.+..-...-+..-+..-..-++++ ..++..|+..+|.+.+.++.. .+-+.|.++-+..
T Consensus 31 ~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~I--r~~I~~G~Ie~Aie~in~l~P---eiLd~n~~l~F~L 105 (228)
T KOG2659|consen 31 RLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQI--RRAIEEGQIEEAIEKVNQLNP---EILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHH--HHHHHhccHHHHHHHHHHhCh---HHHccchhHHHHH
Confidence 44444555566777766555322221111111111112222 577899999999999888764 4444466677877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
...+-.=+++.|..++|+++++.-+.-+
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~LA~~ 133 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTKLAPF 133 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHcccc
Confidence 7777777799999999999998777643
No 388
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=23.01 E-value=1.6e+02 Score=27.07 Aligned_cols=34 Identities=12% Similarity=-0.064 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++.++-=|.-.++.|+|++|.+.++++.+.+.
T Consensus 15 G~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 15 GDARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5567777788888999999999999999998765
No 389
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=22.88 E-value=5.1e+02 Score=31.82 Aligned_cols=84 Identities=25% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhc--cCchHHHHH---HH-hhHHHHHH
Q 002424 603 LTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLS--VSKSRILLL---KL-QLLHERSL 676 (924)
Q Consensus 603 ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~--~~~~~~~~l---~l-~l~~~~al 676 (924)
|..++..+| .++ +..-.++|+.+..++++..|+|.+|.+++-...- ... ..+....++ .+ |++ ..++
T Consensus 439 i~~L~~~iy--~~~---~~~~r~rA~Lc~IY~~AL~d~~~~ARDllLmShl-qe~I~~~D~~tQILyNR~~vQLG-LcAF 511 (595)
T PF05470_consen 439 IDRLCKYIY--KDG---DERLRTRAMLCHIYHHALHDRYYEARDLLLMSHL-QESIQHSDISTQILYNRAMVQLG-LCAF 511 (595)
T ss_pred HHHHHHHHH--HCC---cHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH-HHhhhccCHHHHHHHhHHHHHHH-HHHH
Confidence 445555443 233 3335677888888999999999999998764331 111 112221111 11 232 7899
Q ss_pred HcCCHHHHHHHHHHHhh
Q 002424 677 HRGHLKLAQKVCDELGV 693 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~ 693 (924)
+.|...+|..++..+..
T Consensus 512 R~G~I~eah~~L~el~~ 528 (595)
T PF05470_consen 512 RAGLIKEAHQCLSELCS 528 (595)
T ss_pred HcCCHHHHHHHHHHHHc
Confidence 99999999999988865
No 390
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=22.77 E-value=1.7e+02 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++.++-=|.-.++.|+|++|...++++.+.+.
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~ 46 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEANDSLN 46 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5567777788888999999999999999998765
No 391
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=22.39 E-value=1.2e+02 Score=20.19 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAE 652 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~ 652 (924)
+..+-..+...|++++|.+++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4556667777788888877777554
No 392
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=22.00 E-value=7.7e+02 Score=28.00 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=82.3
Q ss_pred HHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHH-HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 634 HLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLH-ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 634 ~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~-~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
.+|..+=.++++..+.+|+..- ..|...... +. .+.. ..--..-+|..-..+|.-+..+.+ +| .+.+
T Consensus 265 ~lW~r~lI~eg~all~rA~~~~-~pGPYqlqAAIa-a~HA~a~~aedtDW~~I~aLYdaL~~~ap-----SP----vV~L 333 (415)
T COG4941 265 SLWDRALIDEGLALLDRALASR-RPGPYQLQAAIA-ALHARARRAEDTDWPAIDALYDALEQAAP-----SP----VVTL 333 (415)
T ss_pred hhhhHHHHHHHHHHHHHHHHcC-CCChHHHHHHHH-HHHHhhcccCCCChHHHHHHHHHHHHhCC-----CC----eEee
Confidence 3455566789999999888653 355543221 11 1100 122246789988888888877644 22 3344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
|.+-.+...--...++..++.+...-+ -.+-...+-.+|.+..+.|+..+|...+.+|+.++.
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~----L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~ 396 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPR----LDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR 396 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccc----cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence 555555555557788888886655311 122233455677778899999999999999999985
No 393
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=21.92 E-value=1.8e+02 Score=27.11 Aligned_cols=34 Identities=18% Similarity=0.064 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++..+-=|.-.++.|+|++|.+.+++|.+.+.
T Consensus 18 G~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l~ 51 (104)
T PRK09591 18 GNARTEVHEAFAAMREGNFDLAEQKLNQSNEELL 51 (104)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5567778888888999999999999999998765
No 394
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=21.71 E-value=1.9e+02 Score=26.48 Aligned_cols=34 Identities=26% Similarity=0.153 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++..+.-|...++.|+|++|...++++.+.+.
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~ 45 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADEELL 45 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6678888888889999999999999999987654
No 395
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=21.51 E-value=2.1e+02 Score=28.54 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=68.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCC-----------------------------C--cchHHHHHHHHHHHHHHcC
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGV-----------------------------D--MDLKTEASLRHARTLLAAN 721 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~-----------------------------D--~~~~a~a~~~~a~ll~~~G 721 (924)
+.++..|+.++|...+.++.......... | +..........+.-++..|
T Consensus 10 r~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l~~g 89 (155)
T PF10938_consen 10 RLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELLKKG 89 (155)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHHhCC
Confidence 67789999999999999776643311100 1 2334566677888889999
Q ss_pred CHHHHHHHHHHHHHHHH--HcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 722 QFSEAAAVAHSLFCMCY--KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~--~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
+...|.+.+..+-.... ....+......-+..|..++..|++.+|-..+..|+.
T Consensus 90 ~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 90 DKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999886533111 1234455677788889999999999999888777653
No 396
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=21.25 E-value=1.8e+02 Score=27.60 Aligned_cols=34 Identities=9% Similarity=-0.061 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++.++-=|.-.++.|+|++|...+++|.+.+.
T Consensus 29 G~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 62 (115)
T PRK10454 29 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMALN 62 (115)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5567888888889999999999999999998765
No 397
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=7e+02 Score=30.47 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=55.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
..+++.-+..+|=+++|+++......+| +.++..|+++.|.++..++.. -
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~d~rF-----------------elal~lgrl~iA~~la~e~~s-------------~ 666 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDPDQRF-----------------ELALKLGRLDIAFDLAVEANS-------------E 666 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCChhhhh-----------------hhhhhcCcHHHHHHHHHhhcc-------------h
Confidence 4555666667777777766654433333 678899999999987776633 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
.=+..++++.+..|++.-|.+++..+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 2356788888999999999998887644
No 398
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.83 E-value=4e+02 Score=27.88 Aligned_cols=78 Identities=19% Similarity=0.100 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 002424 722 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 801 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG 801 (924)
...+|++.+-++.. ......+..+..+|..|.+ -++.+++.++.++|++...- +..-..++..|+.++...|
T Consensus 121 ~d~~A~~~fL~~E~-----~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~--~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 121 GDQEALRRFLQLEG-----TPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPD--DNFNPEILKSLASIYQKLK 192 (203)
T ss_pred CcHHHHHHHHHHcC-----CCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHhc
Confidence 44667776665422 2233447888899999985 57889999999999998643 2334678888999999999
Q ss_pred CChHHHHH
Q 002424 802 PNHAKMAS 809 (924)
Q Consensus 802 ~~~~~~Al 809 (924)
.. +.|.
T Consensus 193 ~~--e~AY 198 (203)
T PF11207_consen 193 NY--EQAY 198 (203)
T ss_pred ch--hhhh
Confidence 87 7764
No 399
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=1.4e+03 Score=27.59 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHH--HHHhcCCHHHHHH-----HHHHHHHHHHhhhccCCCCCCC
Q 002424 860 QASEELQVLEDHELAAEAFYLIAI--VFDKLGRLAEREE-----AAALFKEYVLALENENRQDEVD 918 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~--l~~~lGd~~~r~~-----aa~~f~~l~~~~~~~~~~~~~~ 918 (924)
.+.+.++.++||...++++|.+|+ ++-..||.++-+- -...|+-+|-.++=..|.-.||
T Consensus 272 ~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~dee~~dil~Ng~lsdhf~ylgkELnl~~Pkvped 337 (881)
T COG5110 272 EIIEYVRAIEDPDYKKQCLYILARQNLYYEASDEEEKDILSNGYLSDHFRYLGKELNLDKPKVPED 337 (881)
T ss_pred HHHHHHHhccChHHHHHHHHHHHhccCCcccCCHHHHHHhcCCcHHHHHHHHHHHhcCCCCCChHH
Confidence 577899999999999999999997 4566677776333 5678999998887766665544
No 400
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.46 E-value=5.5e+02 Score=25.29 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
...+..+.||-+.....+ ..+..+.+..|+.-+. -+.|....+.+|.||.-|..+|..+.+-++...+-+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~---~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRD---TEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccc---hHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445566788877777211 2334455656655443 5789999999999999999999999987776666543
No 401
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=20.40 E-value=7.3e+02 Score=23.42 Aligned_cols=26 Identities=4% Similarity=-0.147 Sum_probs=21.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+|.-++.+|++-.|+++++.....-.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~ 27 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG 27 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc
Confidence 46678899999999999998776644
No 402
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=20.27 E-value=7.3e+02 Score=25.59 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=55.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE 745 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~ 745 (924)
...+.++++..|..++..+..+.. +..+...+....+..|.+....|+..++.+.+++++..++..|....
T Consensus 136 ~~~i~~~~~~~a~~~l~~l~~l~~--~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~ 206 (220)
T TIGR01716 136 VLLIEKNEFSYAQYFLEKLEKILD--PEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTL 206 (220)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHH
Confidence 566789999999999999877632 22244456777788888888999999999999999998887776543
Done!