Query 002424
Match_columns 924
No_of_seqs 238 out of 349
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 01:45:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sf4_A G-protein-signaling mod 99.9 2.9E-19 9.8E-24 200.2 41.4 278 623-910 85-383 (406)
2 3ro2_A PINS homolog, G-protein 99.8 6.2E-18 2.1E-22 182.8 40.5 307 587-905 7-333 (338)
3 4a1s_A PINS, partner of inscut 99.8 6.9E-18 2.4E-22 190.5 40.9 307 586-904 49-372 (411)
4 3sf4_A G-protein-signaling mod 99.8 1.3E-17 4.5E-22 186.6 41.6 306 587-904 11-336 (406)
5 4a1s_A PINS, partner of inscut 99.8 9.1E-18 3.1E-22 189.5 39.4 247 623-879 124-387 (411)
6 3ro2_A PINS homolog, G-protein 99.8 8.2E-17 2.8E-21 173.9 35.1 269 624-904 4-292 (338)
7 3ulq_A Response regulator aspa 99.8 2.3E-16 7.9E-21 177.6 37.3 269 627-910 105-374 (383)
8 1hz4_A MALT regulatory protein 99.7 5.3E-15 1.8E-19 165.3 37.0 309 584-904 13-322 (373)
9 3q15_A PSP28, response regulat 99.7 2.8E-15 9.7E-20 168.6 34.5 268 627-910 103-371 (378)
10 3gw4_A Uncharacterized protein 99.7 1.7E-15 5.8E-20 153.1 24.1 199 675-889 2-201 (203)
11 3ulq_A Response regulator aspa 99.7 2.7E-14 9.3E-19 160.6 36.0 265 591-870 109-374 (383)
12 2ifu_A Gamma-SNAP; membrane fu 99.7 5.8E-15 2E-19 161.8 27.8 252 638-904 4-260 (307)
13 3q15_A PSP28, response regulat 99.6 6.9E-14 2.3E-18 157.3 29.4 269 625-905 12-291 (378)
14 3nf1_A KLC 1, kinesin light ch 99.6 5.6E-14 1.9E-18 151.0 27.2 236 621-865 23-308 (311)
15 1hz4_A MALT regulatory protein 99.6 1.7E-13 5.9E-18 152.9 28.6 265 623-901 12-279 (373)
16 1qqe_A Vesicular transport pro 99.6 2.8E-14 9.7E-19 155.1 21.5 218 673-902 45-264 (292)
17 2ifu_A Gamma-SNAP; membrane fu 99.6 1.4E-13 4.6E-18 150.9 26.9 217 676-901 2-221 (307)
18 1w3b_A UDP-N-acetylglucosamine 99.6 1.1E-12 3.8E-17 147.0 34.8 220 625-890 169-388 (388)
19 3gw4_A Uncharacterized protein 99.6 4.7E-13 1.6E-17 135.0 24.9 196 636-841 3-199 (203)
20 3nf1_A KLC 1, kinesin light ch 99.6 1E-12 3.5E-17 141.0 29.0 224 673-904 35-307 (311)
21 3fp2_A TPR repeat-containing p 99.6 2.2E-11 7.7E-16 141.7 41.0 245 585-870 243-497 (537)
22 3edt_B KLC 2, kinesin light ch 99.5 8.4E-13 2.9E-17 139.2 24.6 219 674-900 10-277 (283)
23 1w3b_A UDP-N-acetylglucosamine 99.5 1.2E-11 4.1E-16 138.6 34.0 230 626-901 136-365 (388)
24 2xpi_A Anaphase-promoting comp 99.5 3.8E-11 1.3E-15 142.1 39.8 239 626-904 340-579 (597)
25 2xpi_A Anaphase-promoting comp 99.5 1.7E-11 5.8E-16 145.1 36.7 242 623-904 303-545 (597)
26 3edt_B KLC 2, kinesin light ch 99.5 1.5E-12 5.2E-17 137.2 23.5 220 636-864 12-281 (283)
27 3ro3_A PINS homolog, G-protein 99.5 1.2E-12 4E-17 125.6 20.5 161 702-870 4-164 (164)
28 1qqe_A Vesicular transport pro 99.5 1.4E-12 4.6E-17 141.8 23.4 231 621-860 33-265 (292)
29 2y4t_A DNAJ homolog subfamily 99.5 6.3E-11 2.2E-15 134.8 37.0 246 625-896 177-446 (450)
30 2gw1_A Mitochondrial precursor 99.5 8.7E-11 3E-15 135.6 38.7 211 625-869 270-483 (514)
31 2gw1_A Mitochondrial precursor 99.5 4.3E-11 1.5E-15 138.2 35.2 245 622-904 234-478 (514)
32 3fp2_A TPR repeat-containing p 99.5 2E-11 6.7E-16 142.2 32.3 240 624-904 242-491 (537)
33 2y4t_A DNAJ homolog subfamily 99.5 4.6E-11 1.6E-15 136.0 34.5 209 626-864 144-358 (450)
34 4eqf_A PEX5-related protein; a 99.4 1E-11 3.5E-16 137.7 23.7 274 587-898 67-350 (365)
35 3ieg_A DNAJ homolog subfamily 99.4 1.5E-10 5E-15 126.4 32.6 209 627-865 122-336 (359)
36 1fch_A Peroxisomal targeting s 99.4 9.5E-12 3.3E-16 137.4 22.0 271 587-898 66-353 (368)
37 3uq3_A Heat shock protein STI1 99.4 3E-11 1E-15 125.8 23.7 234 623-884 3-256 (258)
38 2qfc_A PLCR protein; TPR, HTH, 99.4 1E-11 3.6E-16 134.5 20.8 202 673-884 83-286 (293)
39 3ro3_A PINS homolog, G-protein 99.4 4E-11 1.4E-15 114.7 21.8 158 740-905 2-159 (164)
40 3u4t_A TPR repeat-containing p 99.4 2.2E-11 7.6E-16 128.6 21.3 240 627-904 5-250 (272)
41 4b4t_Q 26S proteasome regulato 99.4 4.9E-11 1.7E-15 135.4 25.2 233 629-871 8-252 (434)
42 3u3w_A Transcriptional activat 99.4 1.5E-11 5E-16 133.3 19.3 192 673-876 83-278 (293)
43 2qfc_A PLCR protein; TPR, HTH, 99.4 2E-10 7E-15 124.3 27.7 209 624-836 74-284 (293)
44 3hym_B Cell division cycle pro 99.4 1.2E-10 4E-15 126.0 25.5 261 591-897 28-292 (330)
45 3u3w_A Transcriptional activat 99.3 1.4E-10 4.8E-15 125.5 25.0 204 622-828 72-276 (293)
46 3hym_B Cell division cycle pro 99.3 5.8E-11 2E-15 128.4 21.7 239 626-904 23-265 (330)
47 3ieg_A DNAJ homolog subfamily 99.3 3.5E-10 1.2E-14 123.3 27.5 280 588-903 40-334 (359)
48 3cv0_A Peroxisome targeting si 99.3 3.3E-10 1.1E-14 122.2 25.9 269 587-897 23-308 (327)
49 4b4t_Q 26S proteasome regulato 99.3 1.8E-10 6.1E-15 130.7 23.3 217 673-897 12-238 (434)
50 2pl2_A Hypothetical conserved 99.3 4.4E-11 1.5E-15 123.9 16.3 197 626-863 6-213 (217)
51 2ho1_A Type 4 fimbrial biogene 99.3 1.8E-10 6.2E-15 120.2 19.2 213 615-865 27-239 (252)
52 1fch_A Peroxisomal targeting s 99.2 9.2E-10 3.1E-14 121.4 25.1 217 625-868 132-363 (368)
53 4g1t_A Interferon-induced prot 99.2 1.9E-09 6.6E-14 123.6 27.5 128 722-868 315-463 (472)
54 4g1t_A Interferon-induced prot 99.2 1.8E-09 6.1E-14 123.9 25.2 240 633-904 183-459 (472)
55 3uq3_A Heat shock protein STI1 99.2 3.4E-09 1.2E-13 110.0 25.0 206 673-907 13-239 (258)
56 4eqf_A PEX5-related protein; a 99.2 8.9E-10 3E-14 122.0 21.6 216 625-866 133-358 (365)
57 1ouv_A Conserved hypothetical 99.2 4.9E-09 1.7E-13 111.4 26.3 227 625-905 6-252 (273)
58 3u4t_A TPR repeat-containing p 99.1 2.5E-09 8.6E-14 112.7 21.8 209 626-865 38-251 (272)
59 2q7f_A YRRB protein; TPR, prot 99.1 6.1E-10 2.1E-14 115.0 16.3 205 621-865 19-223 (243)
60 2pl2_A Hypothetical conserved 99.1 5.3E-10 1.8E-14 115.7 14.8 184 673-897 13-207 (217)
61 2vq2_A PILW, putative fimbrial 99.1 4.5E-09 1.5E-13 106.7 21.3 206 623-865 6-212 (225)
62 3cv0_A Peroxisome targeting si 99.1 3.1E-09 1.1E-13 114.5 19.9 244 590-867 60-318 (327)
63 2xm6_A Protein corresponding t 99.1 6E-07 2E-11 104.3 39.5 229 625-905 183-433 (490)
64 4gyw_A UDP-N-acetylglucosamine 99.1 2.4E-09 8.3E-14 130.8 19.7 171 623-821 7-177 (723)
65 3vtx_A MAMA; tetratricopeptide 99.1 4.9E-09 1.7E-13 104.2 18.4 167 624-818 4-170 (184)
66 2h6f_A Protein farnesyltransfe 99.0 7.8E-09 2.7E-13 117.0 20.4 237 621-904 93-344 (382)
67 2ho1_A Type 4 fimbrial biogene 99.0 8.8E-09 3E-13 107.3 18.6 194 673-904 45-238 (252)
68 2xm6_A Protein corresponding t 99.0 3.1E-06 1.1E-10 98.2 41.0 213 625-886 219-451 (490)
69 2vq2_A PILW, putative fimbrial 99.0 3.4E-08 1.2E-12 100.1 20.3 194 673-903 16-210 (225)
70 3mkr_A Coatomer subunit epsilo 98.9 6.9E-08 2.4E-12 104.8 23.5 222 620-893 29-252 (291)
71 1ouv_A Conserved hypothetical 98.9 1.2E-07 4.1E-12 100.6 24.3 193 626-864 39-251 (273)
72 4abn_A Tetratricopeptide repea 98.9 3.4E-09 1.2E-13 123.4 12.7 187 623-841 100-304 (474)
73 4abn_A Tetratricopeptide repea 98.9 9.2E-09 3.1E-13 119.7 15.7 215 638-896 81-313 (474)
74 2q7f_A YRRB protein; TPR, prot 98.9 1.3E-08 4.5E-13 104.8 15.0 192 673-904 31-222 (243)
75 1xnf_A Lipoprotein NLPI; TPR, 98.9 5.2E-08 1.8E-12 102.4 19.7 206 621-864 39-244 (275)
76 3vtx_A MAMA; tetratricopeptide 98.9 4.5E-08 1.5E-12 97.2 17.7 159 673-865 13-171 (184)
77 1xnf_A Lipoprotein NLPI; TPR, 98.9 1E-07 3.6E-12 100.0 21.2 184 625-836 77-260 (275)
78 4gyw_A UDP-N-acetylglucosamine 98.9 2E-08 6.9E-13 122.7 17.9 161 673-867 17-177 (723)
79 3qky_A Outer membrane assembly 98.9 1E-07 3.5E-12 100.6 21.0 198 625-841 15-244 (261)
80 3as5_A MAMA; tetratricopeptide 98.9 4E-08 1.4E-12 96.0 15.9 171 622-820 5-175 (186)
81 4i17_A Hypothetical protein; T 98.9 1.3E-07 4.5E-12 97.4 20.3 161 626-803 8-169 (228)
82 3qky_A Outer membrane assembly 98.8 4.6E-08 1.6E-12 103.3 17.1 201 673-892 23-249 (261)
83 4i17_A Hypothetical protein; T 98.8 7.2E-08 2.5E-12 99.3 15.0 150 673-841 15-165 (228)
84 3e4b_A ALGK; tetratricopeptide 98.8 2.8E-06 9.7E-11 98.0 29.9 208 627-888 178-403 (452)
85 2yhc_A BAMD, UPF0169 lipoprote 98.7 4.4E-07 1.5E-11 93.9 20.1 179 625-816 4-211 (225)
86 3as5_A MAMA; tetratricopeptide 98.7 1.6E-07 5.3E-12 91.7 14.9 171 702-904 3-173 (186)
87 2h6f_A Protein farnesyltransfe 98.7 4.2E-07 1.4E-11 102.8 20.4 184 625-841 131-321 (382)
88 3mkr_A Coatomer subunit epsilo 98.7 2.2E-07 7.6E-12 100.7 16.8 217 635-900 9-225 (291)
89 3qou_A Protein YBBN; thioredox 98.6 3.6E-07 1.2E-11 98.8 15.9 170 625-820 117-286 (287)
90 2pzi_A Probable serine/threoni 98.6 5.3E-07 1.8E-11 109.7 19.0 192 636-868 402-602 (681)
91 3urz_A Uncharacterized protein 98.6 2.3E-07 8E-12 95.0 12.9 161 673-866 12-188 (208)
92 3n71_A Histone lysine methyltr 98.5 2.4E-06 8.3E-11 99.6 19.2 150 628-777 312-465 (490)
93 4f3v_A ESX-1 secretion system 98.5 5.3E-07 1.8E-11 97.1 12.0 218 622-864 4-237 (282)
94 2pzi_A Probable serine/threoni 98.5 2.6E-07 8.8E-12 112.5 10.8 183 674-890 400-583 (681)
95 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.9E-06 1.3E-10 86.7 18.2 172 673-863 12-212 (225)
96 3n71_A Histone lysine methyltr 98.5 2.9E-06 1E-10 98.9 18.8 146 673-820 317-466 (490)
97 2ond_A Cleavage stimulation fa 98.4 8.7E-06 3E-10 88.3 20.8 224 642-902 33-268 (308)
98 3urz_A Uncharacterized protein 98.4 3.3E-06 1.1E-10 86.3 16.2 169 626-818 5-186 (208)
99 2ond_A Cleavage stimulation fa 98.4 7.9E-06 2.7E-10 88.7 19.9 192 641-867 80-273 (308)
100 2ooe_A Cleavage stimulation fa 98.4 0.0013 4.5E-08 76.7 40.1 225 642-904 255-492 (530)
101 2r5s_A Uncharacterized protein 98.4 1.4E-06 4.9E-11 86.2 12.0 166 627-819 8-174 (176)
102 1hh8_A P67PHOX, NCF-2, neutrop 98.4 3.1E-06 1.1E-10 85.6 14.6 139 623-778 4-152 (213)
103 1a17_A Serine/threonine protei 98.4 1.1E-05 3.6E-10 77.6 17.5 143 622-782 10-152 (166)
104 2vsy_A XCC0866; transferase, g 98.4 1.3E-06 4.6E-11 103.4 12.9 158 678-869 2-162 (568)
105 2fo7_A Synthetic consensus TPR 98.4 7E-06 2.4E-10 75.0 15.0 131 626-776 2-132 (136)
106 4ga2_A E3 SUMO-protein ligase 98.4 1.5E-06 5.1E-11 84.2 10.4 147 630-802 2-149 (150)
107 3qou_A Protein YBBN; thioredox 98.3 2.6E-06 9E-11 91.9 13.2 160 673-864 125-284 (287)
108 4gcn_A Protein STI-1; structur 98.3 5.6E-06 1.9E-10 77.8 13.7 105 706-818 7-112 (127)
109 3rjv_A Putative SEL1 repeat pr 98.3 1E-05 3.5E-10 83.0 16.6 160 673-864 26-197 (212)
110 2vsy_A XCC0866; transferase, g 98.3 3.1E-06 1.1E-10 100.2 14.2 155 638-820 2-159 (568)
111 2fo7_A Synthetic consensus TPR 98.3 7.8E-06 2.7E-10 74.7 13.5 131 708-864 2-132 (136)
112 1a17_A Serine/threonine protei 98.3 1E-05 3.6E-10 77.6 14.0 142 705-870 11-152 (166)
113 3rjv_A Putative SEL1 repeat pr 98.2 2E-05 6.8E-10 80.8 16.7 181 683-905 4-198 (212)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.2 5.7E-06 1.9E-10 83.6 12.2 129 673-820 14-152 (213)
115 4gcn_A Protein STI-1; structur 98.2 8.4E-06 2.9E-10 76.5 12.3 106 746-865 7-113 (127)
116 2r5s_A Uncharacterized protein 98.2 3.7E-06 1.3E-10 83.2 10.0 159 673-864 14-173 (176)
117 4ga2_A E3 SUMO-protein ligase 98.2 1.7E-06 5.8E-11 83.8 7.2 147 712-890 2-149 (150)
118 4f3v_A ESX-1 secretion system 98.2 3.5E-06 1.2E-10 90.7 10.1 193 677-900 18-233 (282)
119 4gco_A Protein STI-1; structur 98.2 1.1E-05 3.8E-10 75.7 11.9 117 702-839 9-125 (126)
120 3upv_A Heat shock protein STI1 98.2 5.8E-05 2E-09 69.7 16.6 119 624-756 3-121 (126)
121 3e4b_A ALGK; tetratricopeptide 98.2 4.2E-05 1.4E-09 88.1 19.1 209 626-886 142-365 (452)
122 3upv_A Heat shock protein STI1 98.1 1.9E-05 6.5E-10 73.0 12.5 120 706-839 3-122 (126)
123 2hr2_A Hypothetical protein; a 98.1 0.0001 3.5E-09 72.3 17.5 115 624-739 10-134 (159)
124 2hr2_A Hypothetical protein; a 98.1 3.9E-05 1.3E-09 75.3 13.7 114 706-821 10-134 (159)
125 4gco_A Protein STI-1; structur 98.1 5.9E-05 2E-09 70.7 14.5 100 623-736 11-110 (126)
126 1p5q_A FKBP52, FK506-binding p 98.1 5.6E-05 1.9E-09 83.5 16.5 138 623-775 145-293 (336)
127 2ooe_A Cleavage stimulation fa 98.0 8.3E-05 2.8E-09 87.0 18.6 206 626-866 273-494 (530)
128 3rkv_A Putative peptidylprolyl 98.0 2.9E-05 9.8E-10 75.4 12.3 108 703-818 7-126 (162)
129 3gyz_A Chaperone protein IPGC; 98.0 9.4E-05 3.2E-09 72.0 15.5 101 623-737 34-134 (151)
130 3rkv_A Putative peptidylprolyl 98.0 6.8E-05 2.3E-09 72.7 14.0 105 623-736 9-126 (162)
131 3gyz_A Chaperone protein IPGC; 98.0 6.9E-05 2.3E-09 73.0 13.9 114 702-833 32-145 (151)
132 2vgx_A Chaperone SYCD; alterna 98.0 1.8E-05 6.3E-10 76.3 9.4 113 686-820 8-120 (148)
133 1elr_A TPR2A-domain of HOP; HO 98.0 9.5E-05 3.2E-09 67.3 13.7 105 706-818 3-108 (131)
134 3sz7_A HSC70 cochaperone (SGT) 98.0 9.4E-05 3.2E-09 71.8 14.3 109 702-824 6-114 (164)
135 2vyi_A SGTA protein; chaperone 98.0 0.00015 5.1E-09 65.8 14.8 123 621-763 8-130 (131)
136 1p5q_A FKBP52, FK506-binding p 97.9 5.3E-05 1.8E-09 83.7 13.1 158 706-914 146-305 (336)
137 3qwp_A SET and MYND domain-con 97.9 0.00017 5.9E-09 82.6 17.7 128 673-800 295-426 (429)
138 2fbn_A 70 kDa peptidylprolyl i 97.9 7.6E-05 2.6E-09 75.0 13.1 130 623-767 36-176 (198)
139 3sz7_A HSC70 cochaperone (SGT) 97.9 9.3E-05 3.2E-09 71.9 13.4 102 623-738 9-110 (164)
140 1elr_A TPR2A-domain of HOP; HO 97.9 0.0001 3.5E-09 67.1 12.7 106 746-865 3-109 (131)
141 2lni_A Stress-induced-phosphop 97.9 8.6E-05 2.9E-09 68.1 12.2 122 621-762 12-133 (133)
142 1xi4_A Clathrin heavy chain; a 97.9 0.0015 5.1E-08 82.9 26.0 261 591-908 1104-1395(1630)
143 1xi4_A Clathrin heavy chain; a 97.9 0.00052 1.8E-08 87.0 21.6 207 631-896 1055-1301(1630)
144 2xev_A YBGF; tetratricopeptide 97.9 0.00044 1.5E-08 63.4 16.2 102 627-736 4-105 (129)
145 3qww_A SET and MYND domain-con 97.9 0.00012 4.2E-09 83.8 14.8 106 674-779 307-414 (433)
146 1na0_A Designed protein CTPR3; 97.8 0.00027 9.4E-09 63.4 14.1 118 624-761 8-125 (125)
147 2xcb_A PCRH, regulatory protei 97.8 0.00074 2.5E-08 63.9 17.6 102 623-738 16-117 (142)
148 3qwp_A SET and MYND domain-con 97.8 0.0003 1E-08 80.5 16.8 133 627-759 289-425 (429)
149 3txn_A 26S proteasome regulato 97.8 0.0036 1.2E-07 70.4 24.7 210 626-841 20-234 (394)
150 2vgx_A Chaperone SYCD; alterna 97.8 0.00032 1.1E-08 67.5 14.0 102 623-738 19-120 (148)
151 1ihg_A Cyclophilin 40; ppiase 97.8 0.00022 7.6E-09 79.9 14.7 130 623-767 221-361 (370)
152 2fbn_A 70 kDa peptidylprolyl i 97.7 8.6E-05 2.9E-09 74.6 10.1 143 677-841 16-168 (198)
153 2xcb_A PCRH, regulatory protei 97.7 0.0003 1E-08 66.7 13.3 102 706-821 17-118 (142)
154 2xev_A YBGF; tetratricopeptide 97.7 0.00076 2.6E-08 61.7 15.7 112 673-795 10-121 (129)
155 2e2e_A Formate-dependent nitri 97.7 0.0001 3.5E-09 72.2 10.1 124 676-821 21-147 (177)
156 2lni_A Stress-induced-phosphop 97.7 0.00021 7.2E-09 65.4 11.4 118 704-841 13-130 (133)
157 2c2l_A CHIP, carboxy terminus 97.7 7.4E-05 2.5E-09 80.2 9.4 102 625-740 4-105 (281)
158 2vyi_A SGTA protein; chaperone 97.7 0.00038 1.3E-08 63.0 12.9 111 673-803 20-130 (131)
159 1na0_A Designed protein CTPR3; 97.7 0.00027 9.2E-09 63.5 11.6 119 702-840 4-122 (125)
160 1wao_1 Serine/threonine protei 97.7 2.7E-05 9.2E-10 90.5 5.8 178 623-820 4-199 (477)
161 1hxi_A PEX5, peroxisome target 97.7 0.00013 4.3E-09 67.8 9.3 91 673-777 25-115 (121)
162 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00041 1.4E-08 80.0 15.6 132 623-768 266-406 (457)
163 3q49_B STIP1 homology and U bo 97.7 0.00022 7.6E-09 66.2 11.0 102 706-821 8-109 (137)
164 3qww_A SET and MYND domain-con 97.7 0.00068 2.3E-08 77.6 16.9 109 637-745 310-421 (433)
165 2e2e_A Formate-dependent nitri 97.7 0.0002 6.7E-09 70.2 10.8 124 636-779 21-147 (177)
166 3q49_B STIP1 homology and U bo 97.6 0.00059 2E-08 63.2 13.5 101 625-739 9-109 (137)
167 1ihg_A Cyclophilin 40; ppiase 97.6 0.00022 7.5E-09 80.0 12.0 141 706-896 222-362 (370)
168 1hxi_A PEX5, peroxisome target 97.6 0.00017 5.7E-09 66.9 9.2 97 708-818 18-114 (121)
169 1elw_A TPR1-domain of HOP; HOP 97.6 0.00065 2.2E-08 60.3 12.6 98 624-735 3-100 (118)
170 3txn_A 26S proteasome regulato 97.6 0.011 3.7E-07 66.5 24.9 206 673-890 27-235 (394)
171 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00032 1.1E-08 80.9 12.0 122 706-841 267-397 (457)
172 1elw_A TPR1-domain of HOP; HOP 97.5 0.00059 2E-08 60.6 11.2 99 706-818 3-101 (118)
173 2dba_A Smooth muscle cell asso 97.5 0.00093 3.2E-08 62.3 13.0 103 623-736 26-128 (148)
174 3mv2_B Coatomer subunit epsilo 97.5 0.0034 1.2E-07 68.3 19.0 167 628-816 103-280 (310)
175 2l6j_A TPR repeat-containing p 97.5 0.00012 4.1E-09 65.2 6.1 100 706-813 3-102 (111)
176 2c2l_A CHIP, carboxy terminus 97.5 0.00027 9.2E-09 75.8 9.9 94 673-780 12-105 (281)
177 3k9i_A BH0479 protein; putativ 97.5 0.00022 7.5E-09 65.2 7.5 90 677-777 2-91 (117)
178 2dba_A Smooth muscle cell asso 97.5 0.00067 2.3E-08 63.3 11.0 102 706-818 27-128 (148)
179 2kck_A TPR repeat; tetratricop 97.4 0.00019 6.6E-09 63.3 5.8 100 707-818 6-106 (112)
180 1b89_A Protein (clathrin heavy 97.3 0.00026 8.9E-09 80.6 7.7 245 593-896 33-303 (449)
181 2kat_A Uncharacterized protein 97.3 0.002 7E-08 58.1 12.4 92 683-788 3-94 (115)
182 3ma5_A Tetratricopeptide repea 97.3 0.0017 5.8E-08 57.6 11.3 81 706-792 6-86 (100)
183 2kck_A TPR repeat; tetratricop 97.3 0.00068 2.3E-08 59.7 8.6 92 673-776 14-106 (112)
184 1na3_A Designed protein CTPR2; 97.3 0.0013 4.4E-08 56.0 9.9 88 702-801 4-91 (91)
185 3k9i_A BH0479 protein; putativ 97.2 0.00041 1.4E-08 63.3 6.5 90 719-819 2-91 (117)
186 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0006 2E-08 75.2 8.3 139 706-863 178-327 (338)
187 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00046 1.6E-08 76.2 7.1 138 624-776 178-328 (338)
188 2l6j_A TPR repeat-containing p 97.1 0.00015 5E-09 64.6 2.3 88 746-841 3-90 (111)
189 1wao_1 Serine/threonine protei 97.1 0.00043 1.5E-08 80.3 6.8 119 673-813 14-134 (477)
190 3mv2_B Coatomer subunit epsilo 97.1 0.012 4.1E-07 63.9 17.5 163 673-864 108-282 (310)
191 3ma5_A Tetratricopeptide repea 97.0 0.0055 1.9E-07 54.3 11.3 86 315-418 3-88 (100)
192 3dra_A Protein farnesyltransfe 96.9 0.016 5.5E-07 63.0 16.7 209 625-865 67-288 (306)
193 2kat_A Uncharacterized protein 96.8 0.014 4.8E-07 52.4 12.6 98 307-422 7-104 (115)
194 4b4t_P 26S proteasome regulato 96.7 0.079 2.7E-06 60.6 21.2 127 746-880 136-263 (445)
195 1klx_A Cysteine rich protein B 96.6 0.0095 3.3E-07 56.4 10.7 114 720-863 8-125 (138)
196 1b89_A Protein (clathrin heavy 96.4 0.0018 6.2E-08 73.7 4.5 204 626-889 33-255 (449)
197 3ffl_A Anaphase-promoting comp 96.4 0.014 4.7E-07 57.1 9.9 129 703-840 16-166 (167)
198 1na3_A Designed protein CTPR2; 96.2 0.033 1.1E-06 47.0 10.4 85 623-721 7-91 (91)
199 1zu2_A Mitochondrial import re 96.1 0.0051 1.7E-07 60.1 5.3 88 677-778 14-122 (158)
200 3dra_A Protein farnesyltransfe 96.0 0.17 5.9E-06 54.8 17.7 227 635-905 42-285 (306)
201 1klx_A Cysteine rich protein B 96.0 0.038 1.3E-06 52.1 10.6 110 679-818 9-126 (138)
202 4e6h_A MRNA 3'-END-processing 95.9 0.23 8E-06 59.8 19.9 222 645-902 329-568 (679)
203 3ly7_A Transcriptional activat 95.7 0.13 4.5E-06 56.9 14.8 140 706-864 195-339 (372)
204 4b4t_P 26S proteasome regulato 95.7 0.83 2.8E-05 52.1 22.2 210 623-841 54-271 (445)
205 3ffl_A Anaphase-promoting comp 95.6 0.1 3.5E-06 50.9 12.2 107 663-771 20-146 (167)
206 4g26_A Pentatricopeptide repea 95.6 0.26 8.8E-06 57.2 18.1 168 627-818 28-204 (501)
207 2v5f_A Prolyl 4-hydroxylase su 95.5 0.068 2.3E-06 47.7 9.9 71 707-777 5-76 (104)
208 4e6h_A MRNA 3'-END-processing 95.5 0.39 1.3E-05 57.9 19.4 213 626-866 344-572 (679)
209 2kc7_A BFR218_protein; tetratr 95.2 0.055 1.9E-06 46.8 8.2 62 711-778 4-66 (99)
210 3ly7_A Transcriptional activat 94.8 0.64 2.2E-05 51.5 16.8 141 625-777 196-340 (372)
211 2kc7_A BFR218_protein; tetratr 94.7 0.3 1E-05 41.9 11.5 56 673-736 8-64 (99)
212 1zu2_A Mitochondrial import re 94.2 0.063 2.2E-06 52.3 6.3 85 637-736 14-120 (158)
213 3q7a_A Farnesyltransferase alp 93.9 1.6 5.5E-05 48.0 17.6 173 621-819 50-238 (349)
214 4b4t_R RPN7, 26S proteasome re 93.5 0.34 1.2E-05 55.0 11.9 142 728-880 111-253 (429)
215 1pc2_A Mitochondria fission pr 93.2 0.38 1.3E-05 46.4 9.6 68 706-777 31-101 (152)
216 1dce_A Protein (RAB geranylger 93.1 0.67 2.3E-05 54.6 13.8 152 626-803 64-242 (567)
217 3mkq_A Coatomer beta'-subunit; 93.0 1 3.5E-05 54.5 15.7 48 673-733 660-707 (814)
218 3dss_A Geranylgeranyl transfer 92.9 6.6 0.00022 42.8 20.3 161 635-819 39-223 (331)
219 3q7a_A Farnesyltransferase alp 92.9 2.2 7.6E-05 46.9 16.6 153 626-803 89-258 (349)
220 2wpv_A GET4, UPF0363 protein Y 92.7 5.8 0.0002 42.8 19.3 123 626-771 34-158 (312)
221 3u64_A Protein TP_0956; tetrat 92.5 2.4 8.3E-05 45.2 15.5 85 724-819 180-270 (301)
222 3dss_A Geranylgeranyl transfer 92.3 9.5 0.00032 41.5 20.6 154 641-820 90-269 (331)
223 4b4t_S RPN3, 26S proteasome re 91.8 0.17 5.9E-06 58.2 6.2 197 705-910 134-354 (523)
224 4g26_A Pentatricopeptide repea 91.6 2.1 7.1E-05 49.5 15.3 89 673-773 113-201 (501)
225 3bee_A Putative YFRE protein; 91.4 0.55 1.9E-05 41.1 7.7 66 707-778 6-74 (93)
226 1dce_A Protein (RAB geranylger 91.1 1.6 5.6E-05 51.2 13.9 157 637-819 40-222 (567)
227 2v5f_A Prolyl 4-hydroxylase su 90.3 0.83 2.8E-05 40.4 8.0 69 748-818 6-75 (104)
228 2wpv_A GET4, UPF0363 protein Y 90.1 23 0.00078 38.1 21.2 181 715-904 21-217 (312)
229 4b4t_R RPN7, 26S proteasome re 89.3 1.5 5.1E-05 49.7 11.1 98 674-776 140-237 (429)
230 3bee_A Putative YFRE protein; 87.4 1.4 4.8E-05 38.4 7.3 48 681-736 25-72 (93)
231 3mkq_A Coatomer beta'-subunit; 87.1 4.4 0.00015 48.8 14.1 185 632-891 606-799 (814)
232 2ff4_A Probable regulatory pro 84.1 9.3 0.00032 42.4 13.7 125 627-783 117-242 (388)
233 1pc2_A Mitochondria fission pr 83.5 6.9 0.00024 37.6 10.5 50 680-736 50-100 (152)
234 3mkq_B Coatomer subunit alpha; 80.8 26 0.0009 34.4 13.8 49 672-733 12-60 (177)
235 3lpz_A GET4 (YOR164C homolog); 80.4 69 0.0024 34.7 21.2 179 717-905 22-217 (336)
236 3lpz_A GET4 (YOR164C homolog); 80.4 32 0.0011 37.3 15.6 115 673-812 43-159 (336)
237 2uy1_A Cleavage stimulation fa 80.1 28 0.00097 39.7 16.3 117 677-820 298-415 (493)
238 1nzn_A CGI-135 protein, fissio 79.7 4.6 0.00016 37.5 7.5 67 706-776 34-103 (126)
239 3u64_A Protein TP_0956; tetrat 77.6 8.3 0.00028 41.1 9.6 87 680-778 178-271 (301)
240 4h7y_A Dual specificity protei 77.2 29 0.00098 33.3 12.2 99 724-833 36-136 (161)
241 4b4t_S RPN3, 26S proteasome re 73.7 24 0.00081 40.7 12.7 79 699-778 223-301 (523)
242 3mkq_B Coatomer subunit alpha; 72.9 65 0.0022 31.5 14.1 45 637-693 17-62 (177)
243 1y8m_A FIS1; mitochondria, unk 70.7 16 0.00054 34.6 8.6 66 706-776 38-106 (144)
244 2ijq_A Hypothetical protein; s 69.3 15 0.00051 35.5 8.4 80 673-754 40-122 (161)
245 4h7y_A Dual specificity protei 68.1 13 0.00043 35.7 7.3 90 682-778 36-125 (161)
246 2ff4_A Probable regulatory pro 65.2 26 0.0009 38.7 10.7 107 706-820 114-236 (388)
247 1nzn_A CGI-135 protein, fissio 64.9 38 0.0013 31.3 9.8 83 806-904 18-103 (126)
248 3o48_A Mitochondria fission 1 59.3 38 0.0013 31.6 8.7 66 706-776 39-107 (134)
249 4gns_B Protein CSD3, chitin bi 59.1 23 0.00078 42.9 9.2 59 665-733 339-397 (754)
250 4b4t_O 26S proteasome regulato 57.0 1.1E+02 0.0037 33.8 13.8 101 637-738 88-200 (393)
251 3spa_A Mtrpol, DNA-directed RN 56.1 75 0.0026 39.7 13.0 106 620-735 122-229 (1134)
252 3o48_A Mitochondria fission 1 55.8 38 0.0013 31.6 8.1 49 680-735 58-106 (134)
253 1y8m_A FIS1; mitochondria, unk 54.7 1.3E+02 0.0044 28.4 11.6 51 678-735 55-105 (144)
254 2cwy_A Hypothetical protein TT 53.1 20 0.0007 31.3 5.6 67 673-743 9-75 (94)
255 1zbp_A Hypothetical protein VP 50.2 55 0.0019 34.3 9.2 120 635-777 7-130 (273)
256 2uy1_A Cleavage stimulation fa 49.8 1.7E+02 0.0058 33.1 14.4 129 625-778 286-415 (493)
257 4gns_B Protein CSD3, chitin bi 49.1 1.2E+02 0.0039 36.7 13.1 123 678-815 261-397 (754)
258 4ady_A RPN2, 26S proteasome re 48.1 4.8E+02 0.016 32.2 19.8 158 673-861 498-655 (963)
259 2cwy_A Hypothetical protein TT 46.3 36 0.0012 29.7 6.0 68 712-781 6-73 (94)
260 2r9g_A AAA ATPase, central reg 42.0 2.4E+02 0.0084 28.0 11.9 98 718-824 25-123 (204)
261 3bge_A Predicted ATPase; struc 41.1 2.4E+02 0.008 28.1 11.5 98 718-824 18-117 (201)
262 2crb_A Nuclear receptor bindin 38.3 52 0.0018 28.5 5.5 34 703-736 11-44 (97)
263 2ijq_A Hypothetical protein; s 38.1 61 0.0021 31.2 6.7 74 707-780 32-108 (161)
264 4fhn_B Nucleoporin NUP120; pro 37.3 89 0.003 39.7 10.2 32 856-887 1021-1052(1139)
265 4ady_A RPN2, 26S proteasome re 35.5 7.2E+02 0.025 30.7 20.2 232 626-890 491-723 (963)
266 1zbp_A Hypothetical protein VP 34.5 2.6E+02 0.0088 29.2 11.3 115 673-818 5-129 (273)
267 3ctd_A Putative ATPase, AAA fa 33.5 1E+02 0.0034 31.0 7.6 98 718-824 46-144 (213)
268 3t5v_B Nuclear mRNA export pro 31.7 2.1E+02 0.0071 32.3 10.9 112 791-910 180-308 (455)
269 3spa_A Mtrpol, DNA-directed RN 28.6 3.2E+02 0.011 34.3 12.4 91 673-773 135-227 (1134)
270 4b4t_O 26S proteasome regulato 28.3 3.4E+02 0.012 29.7 11.9 105 674-778 85-200 (393)
271 1wgl_A TOLL-interacting protei 27.7 75 0.0025 25.2 4.5 45 304-349 9-53 (59)
272 2e2a_A Protein (enzyme IIA); h 25.7 92 0.0032 27.7 5.2 34 623-656 18-51 (105)
273 1wcr_A PTS system, N, N'-diace 25.3 95 0.0033 27.5 5.2 34 623-656 16-49 (103)
274 3t5v_B Nuclear mRNA export pro 24.5 2.1E+02 0.0071 32.3 9.3 92 672-763 183-281 (455)
275 2r17_C Vacuolar protein sortin 23.2 6.7E+02 0.023 26.4 23.7 194 635-833 15-239 (298)
276 3t5x_A PCI domain-containing p 22.7 2.3E+02 0.0077 28.1 8.2 68 615-684 4-72 (203)
277 3k1s_A PTS system, cellobiose- 22.2 1.2E+02 0.004 27.2 5.2 34 623-656 20-53 (109)
278 2w2u_A Hypothetical P60 katani 21.5 1.4E+02 0.0049 25.2 5.4 36 621-656 15-50 (83)
279 1qsa_A Protein (soluble lytic 21.2 8.6E+02 0.029 28.3 14.1 53 674-734 294-346 (618)
280 3l8r_A PTCA, putative PTS syst 21.2 1.2E+02 0.0043 27.6 5.2 34 623-656 35-68 (120)
281 3ctd_A Putative ATPase, AAA fa 20.9 6.3E+02 0.022 25.2 11.1 84 654-747 27-111 (213)
282 2yin_A DOCK2, dedicator of cyt 20.1 7.9E+02 0.027 27.2 12.9 107 732-839 20-143 (436)
No 1
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.9e-19 Score=200.17 Aligned_cols=278 Identities=14% Similarity=0.038 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC--------------------HH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH--------------------LK 682 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~--------------------~~ 682 (924)
..+.++.++|..+...|+|++|...++++.+.++..++.......+...+..+...|+ +.
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 3456678899999999999999999999999988877654322222222267888999 99
Q ss_pred HHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 683 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 683 ~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+|...+.+++.++...+ |+.....+...+|.++...|++++|++.+++++..+...++....+.++..+|.++...|+
T Consensus 165 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999999887766 7677889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
+++|+..+.+++.+....++....+.++..+|.++...|+. ++|+.++++++......++....+.++..+|.++..
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~- 319 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA- 319 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHhhhc
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE-REEAAALFKEYVLALEN 910 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~-r~~aa~~f~~l~~~~~~ 910 (924)
.|++.+|+.++++|++.+..+++......++..+|.++..+|+... .......+..+...+++
T Consensus 320 -----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 383 (406)
T 3sf4_A 320 -----LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383 (406)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----------------
T ss_pred -----cCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999998733 34444444444444443
No 2
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=6.2e-18 Score=182.79 Aligned_cols=307 Identities=12% Similarity=0.022 Sum_probs=266.3
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.+.+.+..+-..|.-.-+.-...-.+.. +..+.+..+.++..+|..+...|+|++|...++++.+.....++......
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3556677777777766665544333332 23345566788999999999999999999999999998877766442221
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC--------------------HHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ--------------------FSEA 726 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~--------------------~~eA 726 (924)
.+......+...|++++|...+.+++.+.+..+ |+.....+...++.++...|+ +++|
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 212222678899999999999999999888766 777788899999999999999 9999
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 002424 727 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 806 (924)
Q Consensus 727 l~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~ 806 (924)
++.+++++..+...++....+.++..+|.++...|+++.|+..+.+++.++...+++...+.++..+|.++...|+. +
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF--E 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--H
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 807 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 807 ~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+|...+++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|.
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 002424 887 KLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 887 ~lGd~~~r~~aa~~f~~l~ 905 (924)
..|+.+++.++.....++.
T Consensus 315 ~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHTCHHHHHHHHHHHHHC-
T ss_pred HcCChHHHHHHHHHHHHHH
Confidence 9999999887666655543
No 3
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=6.9e-18 Score=190.51 Aligned_cols=307 Identities=12% Similarity=0.014 Sum_probs=265.5
Q ss_pred hHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH
Q 002424 586 SSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL 665 (924)
Q Consensus 586 ~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~ 665 (924)
..+...+..+-..|.-.-+.-.....+.. +..+.+..+.++.++|..+...|+|++|...++++.+.+...++.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455666777777766555544333333 2334556678999999999999999999999999999887776644222
Q ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 002424 666 LKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ-----------------FSEAAA 728 (924)
Q Consensus 666 l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~-----------------~~eAl~ 728 (924)
..+...+..+...|++++|..++.+++.++...+ |......++..+|.++...|+ +++|++
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 2222222788899999999999999999887766 666788999999999999999 999999
Q ss_pred HHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHH
Q 002424 729 VAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMA 808 (924)
Q Consensus 729 ~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~A 808 (924)
.+++++..+...++....+.++..+|.++...|+++.|+.++.+++.+....++....+.++..+|.++..+|+. ++|
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A 282 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF--EDA 282 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH--HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH--HHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 002424 809 SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 809 l~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l 888 (924)
+.++++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|...
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTL------LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 002424 889 GRLAEREEAAALFKEY 904 (924)
Q Consensus 889 Gd~~~r~~aa~~f~~l 904 (924)
|+.+++.++.....++
T Consensus 357 g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 357 GGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999987754444443
No 4
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.3e-17 Score=186.64 Aligned_cols=306 Identities=12% Similarity=0.021 Sum_probs=266.1
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.+...+..+-..|...-+.-.....+.. ...+.+..+.++..+|..+...|+|++|...++++....+..++......
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3556777777778776665544333333 23345556789999999999999999999999999998887766442222
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC--------------------HHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ--------------------FSEA 726 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~--------------------~~eA 726 (924)
.+...+..+...|++++|...+.+++.+.+..+ |+...+.+...+|.++...|+ +++|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 222222678899999999999999999988766 777788999999999999999 9999
Q ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 002424 727 AAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 806 (924)
Q Consensus 727 l~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~ 806 (924)
++.+++++..+...++....+.++..+|.++...|+++.|+..+.+++.++...++....+.+...+|.++..+|+. +
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~ 244 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF--E 244 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--H
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 807 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 807 ~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+|+.++++++......++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.+|.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 002424 887 KLGRLAEREEAAALFKEY 904 (924)
Q Consensus 887 ~lGd~~~r~~aa~~f~~l 904 (924)
..|+.+++.++.....++
T Consensus 319 ~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999877754444333
No 5
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=9.1e-18 Score=189.53 Aligned_cols=247 Identities=14% Similarity=0.017 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC-----------------HHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH-----------------LKLAQ 685 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~-----------------~~~A~ 685 (924)
..+.++.++|..+...|+|++|...++++.+.++..++.......+......+...|+ +++|.
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 4456778889999999999999999999999988776644222222222267788999 99999
Q ss_pred HHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhh
Q 002424 686 KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL 765 (924)
Q Consensus 686 ~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~ 765 (924)
.++.+++.+....+ ++.....++..+|.++...|++++|++.+++++..+...++....+.++..+|.++...|++++
T Consensus 204 ~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 204 EFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999999877665 6667888999999999999999999999999999999989989999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 766 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 766 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
|+..+.+++.+....++....+.++..+|.++..+|+. ++|+.++++++......++....+.++..+|.++..
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---- 355 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF--NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA---- 355 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 002424 846 SVSQNPEAVLDPLRQASEELQVLEDHELAAEAFY 879 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~ 879 (924)
.|++++|+.++++|++++++++++..++.+..
T Consensus 356 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 387 (411)
T 4a1s_A 356 --IGGHERALKYAEQHLQLAXXXXXXXXXXXXXX 387 (411)
T ss_dssp --TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred --hccHHHHHHHHHHHHHHHhhcccchhhhhhhh
Confidence 89999999999999999999999998887643
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.80 E-value=8.2e-17 Score=173.92 Aligned_cols=269 Identities=15% Similarity=0.070 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+...|..+...|+|++|...++++.+..+. +.......+......+...|++++|...+++++.++...+ |+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~ 79 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--DQ 79 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--cc
Confidence 3566778899999999999999999999987543 2211111111122678899999999999999999877766 77
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC--------------------h
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN--------------------A 763 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~--------------------~ 763 (924)
...+.+...++.++...|++++|++.+++++..+...++....+.++..+|.++...|+ +
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL 159 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCC
Q 002424 764 VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDP 843 (924)
Q Consensus 764 ~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~ 843 (924)
.+|+..+.+++.++...++....+.+...+|.++...|+. ++|+.++++++......++....+.++..+|.++..
T Consensus 160 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-- 235 (338)
T 3ro2_A 160 QAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNF--RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-- 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 844 SFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 844 ~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.|++++|+.++++|+..+...+++.....++..+|.++...|+.+++.++.....++
T Consensus 236 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 236 ----LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ----HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999987755554444
No 7
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=2.3e-16 Score=177.58 Aligned_cols=269 Identities=10% Similarity=-0.005 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC-cch
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-MDL 705 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D-~~~ 705 (924)
.+..+|..+...|+|++|...+++|.+.+...++...........+..+...|++.+|...+.+++.+++..+ + ...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 182 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE--AYNIR 182 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS--TTHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--cchHH
Confidence 4556888999999999999999999998887776542222222222788899999999999999999988765 4 566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.+...+|.++...|++++|++.+++++..++..++....+.++..+|.++...|++++|+.++.+|+.++...++...
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998566
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.+.++..||.++..+|+. ++|...+++++......++....+. +..+|.++.. .|+. ..+++|+..+
T Consensus 263 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~------~~~~----~~~~~al~~~ 329 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKI--DKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLS------GPDE----EAIQGFFDFL 329 (383)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTS------SCCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhC------CCcH----HHHHHHHHHH
Confidence 699999999999999998 9999999999999999999988887 6779999998 6776 6889999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~ 910 (924)
++.+......+++..+|.+|...|+.+++.++.....++...+.+
T Consensus 330 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 330 ESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998888877777666555
No 8
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.74 E-value=5.3e-15 Score=165.26 Aligned_cols=309 Identities=13% Similarity=0.013 Sum_probs=239.1
Q ss_pred hhhHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHH
Q 002424 584 VGSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRI 663 (924)
Q Consensus 584 ~g~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~ 663 (924)
.+......+.+.-..|...-+.-.....+... ...+....+.++.++|..+...|+|++|...++++.+..+..++...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44555666666666676655554443334433 22233456778999999999999999999999999999988776543
Q ss_pred HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 664 LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 664 ~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
....+......++..|++++|..++++++.+.+..+..+......+...++.++...|++++|.+.+++++..+...++.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 22222222267889999999999999999988776633224567788899999999999999999999999998877766
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~-~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
. .+.++..+|.++...|++++|+..+.+++.+....+.+ ...+.+...++.++...|+. ++|..++++++....
T Consensus 172 ~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~a~~~~~-- 246 (373)
T 1hz4_A 172 Q-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK--AAAANWLRHTAKPEF-- 246 (373)
T ss_dssp G-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHSCCCCC--
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH--HHHHHHHHhCCCCCC--
Confidence 5 56789999999999999999999999999998776664 33333334566778889998 999999999886432
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
++......++..+|++++. .|++++|+.+++++++.....+.+....+++..+|.++...|+.+++.++.....
T Consensus 247 ~~~~~~~~~~~~la~~~~~------~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQIL------LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2212223356788999999 8999999999999999999999998889999999999999999998776544443
Q ss_pred HH
Q 002424 903 EY 904 (924)
Q Consensus 903 ~l 904 (924)
.+
T Consensus 321 ~~ 322 (373)
T 1hz4_A 321 KL 322 (373)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.73 E-value=2.8e-15 Score=168.62 Aligned_cols=268 Identities=12% Similarity=-0.015 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC-cch
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD-MDL 705 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D-~~~ 705 (924)
.+..+|..+...|+|++|...+++|...+...++...........+..+...|++..|...+.+++.+++..+ + ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 180 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP--LYSIR 180 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST--TCHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC--Cchhh
Confidence 4667888999999999999999999998887776442222222222788899999999999999999988655 3 345
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.+..++|.++...|++++|++.+++++..++..++....+.++..+|.++...|++++|+.++.+|+.+++..+++..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+.++..||.++..+|+. ++|+..+++++......++....+. +..++.++.. .++. ..+.+|+..+
T Consensus 261 -~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~ly~~------~~~~----~~~~~al~~~ 326 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQT--QKAFQFIEEGLDHITARSHKFYKEL-FLFLQAVYKE------TVDE----RKIHDLLSYF 326 (378)
T ss_dssp -HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCCTTCCSCHHHH-HHHHHHHHSS------SCCH----HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhC------CCcH----HHHHHHHHHH
Confidence 99999999999999998 9999999999999998888777664 5778888877 5554 6788888889
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhc
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYVLALEN 910 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~~~~~~ 910 (924)
++.+......+++..+|.+|...|+.+.+.++.....++...+.+
T Consensus 327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999988877776666655544
No 10
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.70 E-value=1.7e-15 Score=153.12 Aligned_cols=199 Identities=16% Similarity=0.069 Sum_probs=178.4
Q ss_pred HHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Q 002424 675 SLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLA 754 (924)
Q Consensus 675 al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la 754 (924)
++..|++.+|...++.+.. |+...+.+...+|.++...|++++|++.+++++..++..++....+.++..+|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3578999999986554432 55568899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 755 EIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 755 ~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
.++...|++++|+..+.+++.+++..+ .+...+.++..+|.++..+|+. ++|+..+++++......++....+.++.
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL--AGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999 4558999999999999999998 9999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 834 AEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 834 ~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
.+|.++.. .|++++|+.++++|++.++..+++..+++++..++.+....|
T Consensus 152 ~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (203)
T 3gw4_A 152 GLGDLAQQ------EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201 (203)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHH------CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhccc
Confidence 99999999 899999999999999999999999999999999987654433
No 11
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=2.7e-14 Score=160.58 Aligned_cols=265 Identities=13% Similarity=-0.009 Sum_probs=222.8
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc-hHHHHHHHh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLKLQ 669 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-~~~~~l~l~ 669 (924)
.+......|.-.-+.-+....+.......+....+.++.++|..+...|+|++|...+++|.+.++..++ .......+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5555566666665555444334433334455568899999999999999999999999999999998876 322222233
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 670 LLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 670 l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
..+..+...|++++|...+.+++.+++..+ |+...+.+..++|.++...|++++|++.+++++.+++..++....+.+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 333788899999999999999999988776 778888999999999999999999999999999999998886777999
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
+..+|.++...|+++.|+.++.+|+.++...+++...+. ...|+.++...|.. ..+++++......+.....+
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~------~~~~~al~~~~~~~~~~~~~ 339 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE------EAIQGFFDFLESKMLYADLE 339 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH------HHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999988888 56699999888872 45666777777778999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 830 RAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
.++..||.++.. .|++++|+.++++|++..+++..
T Consensus 340 ~~~~~la~~y~~------~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 340 DFAIDVAKYYHE------RKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999 99999999999999999887765
No 12
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.69 E-value=5.8e-15 Score=161.76 Aligned_cols=252 Identities=9% Similarity=-0.061 Sum_probs=212.0
Q ss_pred ccCHHHHHHHHHHHHHHhhc-----cCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLS-----VSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~-----~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
.|+|++|..+++++....+. .++.....-.+......+...|+|++|...+.+++.+....+ |+...+.++.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 58899999999998886542 122121111122222567789999999999999999988777 77788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLT 792 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~ 792 (924)
++.++...|++++|++.+++++.+....|+....+.++..+|.+|.. |++++|+.++.+|+.+....+.....+.++..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH
Q 002424 793 LAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE 872 (924)
Q Consensus 793 La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~ 872 (924)
+|.++..+|+. ++|+.++++++......+.....+.++..+|.+++. .|++.+|+.++++|+ ....... .
T Consensus 161 lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~A~~~~~~al-~~p~~~~-~ 230 (307)
T 2ifu_A 161 ASRLLVRQQKF--DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH------RADYVAAQKCVRESY-SIPGFSG-S 230 (307)
T ss_dssp HHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHT-TSTTSTT-S
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHh-CCCCCCC-C
Confidence 99999999998 999999999999999999988899999999999999 899999999999999 5544332 3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 873 LAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 873 ~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.++..+..++..+ ..|+.+...+ +..|..+
T Consensus 231 ~e~~~l~~l~~~~-~~~d~~~~~~-~~~~~~~ 260 (307)
T 2ifu_A 231 EDCAALEDLLQAY-DEQDEEQLLR-VCRSPLV 260 (307)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHH-HTTSHHH
T ss_pred HHHHHHHHHHHHH-HhcCHHHHHH-HHhCchh
Confidence 4566777777777 4688777665 3334443
No 13
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=6.9e-14 Score=157.28 Aligned_cols=269 Identities=12% Similarity=0.043 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh-HHHHHHHcCCHHHHH---------HHHHHHhhh
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL-LHERSLHRGHLKLAQ---------KVCDELGVM 694 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l-~~~~al~~G~~~~A~---------~~l~~ll~l 694 (924)
.....+=-+....++++++|..+++++...+.......-..+-.++ .+...+..+.+..+. ..+..+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 3334444455578999999999999999888776443322222221 112233334444444 556655442
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
... .|........+..|.++...|++++|++.+++++..+...++....+.++..+|.++...|++..|+.++.+|+
T Consensus 92 ~~~---~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 92 QKK---LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp GHH---HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCC---CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 111 13444566788899999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHHHHhCC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 775 SFCQLLNL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 775 ~la~~~g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
.+....+. ....+.+...||.++..+|+. ++|+..+++++......++....+.++..+|.++.. .|++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~------~~~~~~ 240 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHY--DKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR------SGDDQM 240 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------CCCHHH
Confidence 99998876 678899999999999999998 999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
|+.++++|++.++..+++.. ..++..+|.+|...|+.+++.++......+.
T Consensus 241 A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988 9999999999999999999887666555543
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=5.6e-14 Score=150.96 Aligned_cols=236 Identities=16% Similarity=0.029 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC--chH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS--KSR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~--~~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
....+.++..+|..+...|+|++|...++++.+.+.... +.. .......+ +..+...|++++|...+++++.++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL-ALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999999999999876543 221 11111122 26788999999999999999998765
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLS 775 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~ 775 (924)
....|......+...++.++...|++++|++.+++++..++.. ++......++..+|.++...|++++|+..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5223555678899999999999999999999999999988776 66677889999999999999999999999999999
Q ss_pred HHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC------------------------------
Q 002424 776 FCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG------------------------------ 823 (924)
Q Consensus 776 la~~~--g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g------------------------------ 823 (924)
++... ++....+.+...+|.++..+|+. ++|..++++++......+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKF--KQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 99877 56778889999999999999998 999999999998765431
Q ss_pred -------------CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 824 -------------GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 824 -------------d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.....+.++..+|.++.. .|++++|+.++++|+++.
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRR------QGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHh
Confidence 335677889999999999 899999999999998875
No 15
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=1.7e-13 Score=152.93 Aligned_cols=265 Identities=13% Similarity=-0.000 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
-.+.+...+|..+...|++++|...++++....+. .+...+...+......+...|++++|...+++++.+++..+ +
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 88 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--V 88 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--c
Confidence 34566778888899999999999999999987753 22222222222222677889999999999999999988766 7
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc--hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ--VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~--~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+.....+...++.++...|++++|.+.+++++..+++.++. .....++..+|.++...|++++|..++.+++.++...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 77788889999999999999999999999999999887776 5678889999999999999999999999999999887
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH-HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL-ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~-~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
+.+. .+.+...+|.++...|+. ++|+.++++++......+.. ...+.....++.++.. .|++++|..+++
T Consensus 169 ~~~~-~~~~~~~la~~~~~~g~~--~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~A~~~~~ 239 (373)
T 1hz4_A 169 QPQQ-QLQCLAMLIQCSLARGDL--DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM------TGDKAAAANWLR 239 (373)
T ss_dssp CGGG-GHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred CcHH-HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH------CCCHHHHHHHHH
Confidence 7765 567888899999999998 99999999999887666552 3333333455566777 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
++...... .......++..+|.++...|+.+++.+.....
T Consensus 240 ~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 240 HTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HSCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCCCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98764321 11111235678899999999998876644433
No 16
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.60 E-value=2.8e-14 Score=155.12 Aligned_cols=218 Identities=13% Similarity=0.047 Sum_probs=181.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|+|++|...+.+++.+.+..+ |+...+.++.++|.++...|++++|+..+++++.+....|+....+.++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAG--NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 355678999999999999999988776 777788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH-HHHHH
Q 002424 753 LAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL-ELRAR 830 (924)
Q Consensus 753 la~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~-~~~A~ 830 (924)
+|.+|... |++++|+.++.+|+.+....+.....+.++..+|.++..+|+. ++|+.++++++......+.. +..+.
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY--IEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999996 9999999999999999999988888899999999999999998 99999999999877666553 45667
Q ss_pred HHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 831 AFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 831 a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
++..+|.|+.. .|++.+|+.++++|+++....... .+...+..++..+. .|+...-.++...|+
T Consensus 201 ~~~~lg~~~~~------~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 201 YFLKKGLCQLA------ATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVN-EGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHH------TTCHHHHHHHHHGGGCC----------HHHHHHHHHHHH-TTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHH------cCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHH-cCCHHHHHHHHHHhc
Confidence 88999999999 899999999999998866655433 33456666676664 345444444555553
No 17
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.60 E-value=1.4e-13 Score=150.85 Aligned_cols=217 Identities=12% Similarity=-0.011 Sum_probs=193.7
Q ss_pred HHcCCHHHHHHHHHHHhhhhhc--cC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASS--VT-GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~--~~-~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
+..|++.+|.++++++...... .. ..|...........+.++...|++++|++.+.+++.+....++....+.++..
T Consensus 2 ~~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 2 IAAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3467888888888887764331 01 23656566677777888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|+++.|+.++.+|+.+..+.|+....+.++..+|.++.. |++ ++|+.++++++.+....|+....+.++
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~--~~A~~~~~~Al~~~~~~~~~~~~~~~~ 158 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL--SKAVHLYQQAAAVFENEERLRQAAELI 158 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH--HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH--HHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999988 887 999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
..+|.++.. .|++++|+.++++|+..+...+.....+.++..++.++...|+.+++..+...+
T Consensus 159 ~~lg~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 159 GKASRLLVR------QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999 999999999999999999999998888999999999999999999877765544
No 18
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.60 E-value=1.1e-12 Score=147.03 Aligned_cols=220 Identities=14% Similarity=0.014 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|++++|...++++.+..|.... .+ . .+ +..+...|++++|...+.+++.+.+ +
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~-~--~l-g~~~~~~~~~~~A~~~~~~al~~~p-----~-- 235 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--AY-I--NL-GNVLKEARIFDRAVAAYLRALSLSP-----N-- 235 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH--HH-H--HH-HHHHHTTTCTTHHHHHHHHHHHHCT-----T--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH--HH-H--HH-HHHHHHcCCHHHHHHHHHHHHhhCc-----C--
Confidence 467889999999999999999999999987653221 11 1 11 1577889999999999999988632 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...++.++...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+.-.
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----- 303 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT----- 303 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----
Confidence 35778899999999999999999999998731 122457889999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...++..+|.++...|+. ++|+.++++++...- ..+.++..+|.++.. .|++++|+.++++|++.
T Consensus 304 -~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 304 -HADSLNNLANIKREQGNI--EEAVRLYRKALEVFP------EFAAAHSNLASVLQQ------QGKLQEALMHYKEAIRI 368 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCH--HHHHHHHHHHTTSCT------TCHHHHHHHHHHHHT------TTCCHHHHHHHHHHHTT
T ss_pred -cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCC------CcHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhh
Confidence 245677899999999998 999999999986421 235688899999999 89999999999999864
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
. .....+++.+|.++..+|+
T Consensus 369 ~------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 369 S------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp C------TTCHHHHHHHHHHHHHTCC
T ss_pred C------CCCHHHHHhHHHHHHHccC
Confidence 2 2346788889998888774
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.57 E-value=4.7e-13 Score=134.99 Aligned_cols=196 Identities=11% Similarity=-0.098 Sum_probs=165.7
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...|+|++|.+.++.... .......... .+ ...+...|++++|..++++++.++...+ ++...+.+...+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~~----~~~~~~~~~~-~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA----HPATASGARF-ML-GYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHHT----STTTHHHHHH-HH-HHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC----ChHHHHHHHH-HH-HHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 467999999995443321 1111111111 12 2678899999999999999999988776 77778999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 002424 716 TLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 716 ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 794 (924)
++...|++++|++.+++++..++..++ +...+.++..+|.++...|++++|+..+.+++.++...+++...+.++..+|
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999999999884 5588999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.++...|+. ++|+..+++++....+.|+....+.++..++++...
T Consensus 155 ~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (203)
T 3gw4_A 155 DLAQQEKNL--LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH 199 (203)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-
T ss_pred HHHHHCcCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchhhc
Confidence 999999998 999999999999999999999999999999866443
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=1e-12 Score=141.01 Aligned_cols=224 Identities=15% Similarity=0.080 Sum_probs=196.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al 750 (924)
..++..|++++|..++++++.++......+......+...+|.++...|++++|++.+++++..++.. ++......++
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 67889999999999999999987655433445578899999999999999999999999999988876 6677889999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh--CCHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLE 826 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~--gd~~ 826 (924)
..+|.++...|++++|+..+.+++.+..+. +.....+.++..+|.++...|+. ++|+.++++++...... ++..
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY--EEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999887 77888899999999999999998 99999999999998776 5566
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc-------------------------------------
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE------------------------------------- 869 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~------------------------------------- 869 (924)
..+.++..+|.++.. .|++++|+.++++|++.+...+
T Consensus 193 ~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 193 NVAKTKNNLASCYLK------QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp HHHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred HHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 788999999999999 8999999999999998765532
Q ss_pred ------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 870 ------DHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 870 ------~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.......++..+|.+|...|+.+++.++.....++
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44677889999999999999999987766555443
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.55 E-value=2.2e-11 Score=141.74 Aligned_cols=245 Identities=12% Similarity=0.002 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHH
Q 002424 585 GSSYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL 664 (924)
Q Consensus 585 g~~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~ 664 (924)
+..+...+..+...|...-+.-.....+... +. ..++..+|..+...|+|++|...++.+.+..+.... .+
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~----~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~ 313 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH----PT---PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP--TY 313 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CC---HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH--HH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----CC---chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH--HH
Confidence 3344444555555555444433332222211 11 467889999999999999999999999988764221 11
Q ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch
Q 002424 665 LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV 744 (924)
Q Consensus 665 ~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~ 744 (924)
. .+ +..+...|++++|...+++++.+.+. + ..+...++.++...|++++|++.+++++....
T Consensus 314 ~---~l-~~~~~~~~~~~~A~~~~~~a~~~~~~----~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------ 375 (537)
T 3fp2_A 314 Y---HR-GQMYFILQDYKNAKEDFQKAQSLNPE----N----VYPYIQLACLLYKQGKFTESEAFFNETKLKFP------ 375 (537)
T ss_dssp H---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT----C----SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred H---HH-HHHHHhcCCHHHHHHHHHHHHHhCCC----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 1 11 16778999999999999999986331 2 36788999999999999999999999987532
Q ss_pred hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHH
Q 002424 745 ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF----------GPNHAKMASNLIQQ 814 (924)
Q Consensus 745 ~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l----------G~~~~~~Al~lLe~ 814 (924)
....++..+|.++...|+++.|+..+.+++.+................+|.++... |+. ++|+..+++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~A~~~~~~ 453 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF--NAAIKLLTK 453 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH--HHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH--HHHHHHHHH
Confidence 22457788999999999999999999999999977776666666667788888888 887 999999999
Q ss_pred HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC
Q 002424 815 ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED 870 (924)
Q Consensus 815 aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~ 870 (924)
++..-- . ...++..+|.++.. .|++.+|+.++++|++.......
T Consensus 454 a~~~~p--~----~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 454 ACELDP--R----SEQAKIGLAQLKLQ------MEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHCT--T----CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHhCC--C----CHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhCCCcHH
Confidence 987632 1 23678999999999 89999999999999998755443
No 22
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.54 E-value=8.4e-13 Score=139.15 Aligned_cols=219 Identities=16% Similarity=0.054 Sum_probs=189.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVLL 751 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al~ 751 (924)
-....|++++|..++++++.++......|....+.++..+|.++...|++++|++.+++++..++.. ++....+.++.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 3356899999999999999987766544545678999999999999999999999999999998877 67778899999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh--CCHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNL--DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH--GGLEL 827 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~--~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~--gd~~~ 827 (924)
.+|.++...|++++|+..+.+++.++.+.+. ....+.++..+|.++..+|+. ++|+.++++++...... ++...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA--EEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCCHH
Confidence 9999999999999999999999999977744 478889999999999999998 99999999999997665 44567
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc--------------------------------------
Q 002424 828 RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE-------------------------------------- 869 (924)
Q Consensus 828 ~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~-------------------------------------- 869 (924)
.+.++..+|.++.. .|++++|+.+++++++.+....
T Consensus 168 ~~~~~~~la~~~~~------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 168 VAKTKNNLASCYLK------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWY 241 (283)
T ss_dssp HHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----------
T ss_pred HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 88999999999999 8999999999999999865532
Q ss_pred -----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 870 -----DHELAAEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 870 -----~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
.......++..+|.+|...|+.+++.++...
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467788999999999999999987765443
No 23
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=1.2e-11 Score=138.57 Aligned_cols=230 Identities=20% Similarity=0.070 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+..++|..+...|++++|...++++.+..|.... .+. .+ +..+...|++++|...+++++.+.+ .
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~---~l-~~~~~~~g~~~~A~~~~~~al~~~p-------~- 201 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV--AWS---NL-GCVFNAQGEIWLAIHHFEKAVTLDP-------N- 201 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH--HHH---HH-HHHHHTTTCHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCC-------C-
Confidence 66788999999999999999999999987553211 111 11 1577899999999999999998622 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...++.++...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 202 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 269 (388)
T 1w3b_A 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLS------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------ 269 (388)
T ss_dssp CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Confidence 35788999999999999999999999998742 223667889999999999999999999999875311
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
...+...+|.++...|+. ++|+.++++++...- ..+.++..+|.++.. .|++++|+.++++|++..
T Consensus 270 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSV--AEAEDCYNTALRLCP------THADSLNNLANIKRE------QGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp CHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHT------TTCHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCc------ccHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhcC
Confidence 234678899999999998 999999999987632 124578899999998 899999999999998753
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALF 901 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f 901 (924)
.....++..+|.++...|+.+++.++....
T Consensus 336 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 336 ------PEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp ------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223568899999999999998876654433
No 24
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=3.8e-11 Score=142.07 Aligned_cols=239 Identities=15% Similarity=0.028 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..++..+...|++++|...++++....+. +...+.. + ...+...|++++|..+++++..+.+ .
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~---l-~~~~~~~g~~~~A~~~~~~~~~~~~----~---- 405 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPE--KAVTWLA---V-GIYYLCVNKISEARRYFSKSSTMDP----Q---- 405 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--SHHHHHH---H-HHHHHHTTCHHHHHHHHHHHHHHCT----T----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc--cHHHHHH---H-HHHHHHhccHHHHHHHHHHHHHhCC----C----
Confidence 45677888888999999999999988866442 1111211 1 1677899999999999999988522 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...++..++.++...|++++|++.+++++.... ....++..+|.++.+.|++++|+..+.+++.+...
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------ 473 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ------GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------ 473 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT------TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 346788999999999999999999999886421 23567888999999999999999999999876321
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHH-HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~-~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+...++.++...|+. ++|++++++++......+.... .+.++..+|.++.. .|++++|+.+++++++.
T Consensus 474 ~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDM--QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK------LKMYDAAIDALNQGLLL 545 (597)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHh
Confidence 235678899999999998 9999999999988766443222 37899999999999 89999999999999876
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 865 LQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 865 f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.. ....++..++.+|...|+.+++.++.....++
T Consensus 546 ~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 546 ST------NDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 41 23478999999999999999877766555443
No 25
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.7e-11 Score=145.12 Aligned_cols=242 Identities=12% Similarity=0.003 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..++..+...|+|++|...++++.+..+...... ..+. ..+...|++++|..+++++....+ +
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~-----~ 371 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY-PLHL-----ASLHESGEKNKLYLISNDLVDRHP-----E 371 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH-HHHH-----HHHHHHTCHHHHHHHHHHHHHHCT-----T
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH-HHHH-----HHHHHhCCHHHHHHHHHHHHhhCc-----c
Confidence 3467788999999999999999999999998765422211 1111 456789999999999999987422 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
...+...++.++...|++++|++.+++++... .....++..+|.++.+.|++++|+..+.+++.+...
T Consensus 372 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 439 (597)
T 2xpi_A 372 ---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG--- 439 (597)
T ss_dssp ---SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---
T ss_pred ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---
Confidence 35778889999999999999999999998742 123567889999999999999999999998866321
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQAS 862 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~ 862 (924)
...+...++.++...|.. ++|++++++++... -. ...++..+|.++.. .|++++|+.++++++
T Consensus 440 ---~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~--~~----~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 440 ---THLPYLFLGMQHMQLGNI--LLANEYLQSSYALF--QY----DPLLLNELGVVAFN------KSDMQTAINHFQNAL 502 (597)
T ss_dssp ---CSHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHC--CC----CHHHHHHHHHHHHH------TTCHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC--CC----ChHHHHHHHHHHHH------hCCHHHHHHHHHHHH
Confidence 235677899999999998 99999999997642 12 24678899999999 899999999999999
Q ss_pred HHHHhhcC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 863 EELQVLED-HELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 863 ~~f~~l~~-~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.....+. +.....++..++.++...|+.+++.++.....++
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98876553 3334789999999999999999877765554433
No 26
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=1.5e-12 Score=137.18 Aligned_cols=220 Identities=16% Similarity=0.015 Sum_probs=181.6
Q ss_pred HHccCHHHHHHHHHHHHHHhhccC--c-hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVS--K-SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~--~-~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
...|++++|...++++.+.+.... + .....+...++ ..+...|++++|...+.+++.+.....+.|......+...
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILA-LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 346889999999999999876542 2 22222221222 7888999999999999999998765533355567899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHccc--chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh--CCcHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNL--QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL--NLDLLKAS 788 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd--~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~--g~~~~~A~ 788 (924)
+|.++...|++++|++.+++++..+++.+. ......++..+|.++...|++++|+..+.+++.++... .+....+.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999999998877644 36678899999999999999999999999999998766 44677889
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC-------------------------------------------CH
Q 002424 789 ATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG-------------------------------------------GL 825 (924)
Q Consensus 789 al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g-------------------------------------------d~ 825 (924)
+...+|.++..+|+. ++|+.++++++......+ +.
T Consensus 171 ~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKY--QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 999999999999998 999999999998865432 34
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 826 ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 826 ~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+.++..+|.++.. .|++++|+.++++|++.
T Consensus 249 ~~~~~~~~~la~~~~~------~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVNTTLRSLGALYRR------QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHh
Confidence 6678889999999999 89999999999999864
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.50 E-value=1.2e-12 Score=125.56 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=153.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+...+.+...+|.++...|++++|++.+++++..+...++....+.++..+|.++...|++++|+.++.+++.++...+
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
++...+.+...+|.++...|+. ++|...+++++......++....+.++..+|.++.. .|++++|+.++++|
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA------LGNHDQAMHFAEKH 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH------ccCHHHHHHHHHHH
Confidence 9999999999999999999998 999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHhhcC
Q 002424 862 SEELQVLED 870 (924)
Q Consensus 862 ~~~f~~l~~ 870 (924)
++.++++++
T Consensus 156 ~~~~~~~~d 164 (164)
T 3ro3_A 156 LEISREVGD 164 (164)
T ss_dssp HHHHTTC--
T ss_pred HHHHHHhCC
Confidence 999987654
No 28
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.50 E-value=1.4e-12 Score=141.81 Aligned_cols=231 Identities=8% Similarity=-0.094 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+..+..+...|.++...|+|++|...++++.+.++..++.......+...+..+...|++++|..++++++.+.+..+
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g- 111 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG- 111 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-
Confidence 3444555666677888999999999999999999988876543222223223788899999999999999999988777
Q ss_pred CCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLAA-NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~-G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
|+...+.++.++|.++... |++++|++.+++++.+....++....+.++..+|.++...|++++|+..+.+++.+...
T Consensus 112 -~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 112 -QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred -CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 7777889999999999996 99999999999999999888877777889999999999999999999999999998766
Q ss_pred hCCc-HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH
Q 002424 780 LNLD-LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL 858 (924)
Q Consensus 780 ~g~~-~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L 858 (924)
.+.. +..+.++..+|.++..+|+. ++|+..+++++.+--.+++. .++..+..++.++... + .+.+.+|+..+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~~~-~---~~~~~~A~~~~ 263 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDA--VAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEG-D---SEQLSEHCKEF 263 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCH--HHHHHHHHGGGCC----------HHHHHHHHHHHHTT-C---TTTHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHcC-C---HHHHHHHHHHh
Confidence 5553 45667888899999999998 99999999998876665543 2345666666665421 1 34445544444
Q ss_pred HH
Q 002424 859 RQ 860 (924)
Q Consensus 859 ~~ 860 (924)
++
T Consensus 264 ~~ 265 (292)
T 1qqe_A 264 DN 265 (292)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 29
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.49 E-value=6.3e-11 Score=134.80 Aligned_cols=246 Identities=13% Similarity=0.023 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|.++...|++++|...++++.+..+... ..+. .+ ...+...|++++|...+++++.+.+. ++.
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~---~l-~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~ 246 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNT--EAFY---KI-STLYYQLGDHELSLSEVRECLKLDQD----HKR 246 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT----CHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHH---HH-HHHHHHcCCHHHHHHHHHHHHHhCCC----hHH
Confidence 46788999999999999999999999998765321 1111 11 15778899999999999999886331 211
Q ss_pred hH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 705 LK--------TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 705 ~~--------a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.. .......+.++...|++++|++.+++++.... .+......++..+|.++.+.|+++.|+..+.+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11 11124459999999999999999999988532 233444678999999999999999999999999887
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC-----CC-CCCC--
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD-----PS-FSVS-- 848 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~-----~~-~~~~-- 848 (924)
.. ..+.++..+|.++...|+. ++|+..+++++..-- .+ ..++..++++.... .+ ....
T Consensus 325 ~p------~~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 325 EP------DNVNALKDRAEAYLIEEMY--DEAIQDYETAQEHNE--ND----QQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp CT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSS--SC----HHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred Cc------ccHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCc--ch----HHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 32 1246788899999999998 999999999987422 12 33445555332220 00 0012
Q ss_pred ---CChHHHHHHHHH-HHHHHHhh-cCH---HHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 849 ---QNPEAVLDPLRQ-ASEELQVL-EDH---ELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 849 ---g~~~~Al~~L~~-A~~~f~~l-~~~---~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.+..++...+++ |+...-.. ... ......+..++.+|..+||++.|..
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 244566666665 43322111 111 3345566677777777777666543
No 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8.7e-11 Score=135.55 Aligned_cols=211 Identities=13% Similarity=0.045 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|..+...|++++|...++.+....+.... .+. .+ ...+...|++.+|...+++++.+.+.
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~~------- 336 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS--VYY---HR-GQMNFILQNYDQAGKDFDKAKELDPE------- 336 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH--HHH---HH-HHHHHHTTCTTHHHHHHHHHHHTCSS-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH--HHH---HH-HHHHHHhCCHHHHHHHHHHHHHhChh-------
Confidence 678899999999999999999999999877654332 111 11 15778899999999999999886331
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...++.++...|++++|+..+++++..... ...++..+|.++...|+++.|+..+.+++.+........
T Consensus 337 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 337 -NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp -CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 2457889999999999999999999999875321 246788999999999999999999999999887665544
Q ss_pred HHHHHHHHHHHHHHH---cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLS---FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 785 ~~A~al~~La~l~~~---lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..+.+...+|.++.. .|+. ++|+..+++++...- ....++..+|.++.. .|++.+|+.++++|
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~--~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~------~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENF--IEATNLLEKASKLDP------RSEQAKIGLAQMKLQ------QEDIDEAITLFEES 475 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHHHhCc------ccHHHHHHHHHHHHH------hcCHHHHHHHHHHH
Confidence 445578899999999 8987 999999999987532 124678899999999 89999999999999
Q ss_pred HHHHHhhc
Q 002424 862 SEELQVLE 869 (924)
Q Consensus 862 ~~~f~~l~ 869 (924)
++....-.
T Consensus 476 ~~~~~~~~ 483 (514)
T 2gw1_A 476 ADLARTME 483 (514)
T ss_dssp HHHCSSHH
T ss_pred HHhccccH
Confidence 98765433
No 31
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.48 E-value=4.3e-11 Score=138.16 Aligned_cols=245 Identities=12% Similarity=-0.030 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.....++..+|..+...|+|++|...++++.+..+. ...+. .+ ...+...|++.+|...+++++.+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~~---- 302 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYI---YM-ALIMADRNDSTEYYNYFDKALKLDSN---- 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---HHHHH---HH-HHHHHTSSCCTTGGGHHHHHHTTCTT----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---HHHHH---HH-HHHHHHCCCHHHHHHHHHHHhhcCcC----
Confidence 466788999999999999999999999999988764 21111 11 16778999999999999999885321
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
...+...++.++...|++++|+..+++++..... ...++..+|.++...|+++.|+..+.+++.+...
T Consensus 303 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 370 (514)
T 2gw1_A 303 ----NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE------NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-- 370 (514)
T ss_dssp ----CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS------CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--
T ss_pred ----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--
Confidence 2457889999999999999999999999874221 2458889999999999999999999999876432
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
...+...+|.++...|+. ++|+..+++++...-..+.....+.++..+|.++.... ..|++++|+.++++|
T Consensus 371 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 371 ----APEVPNFFAEILTDKNDF--DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP---TVENFIEATNLLEKA 441 (514)
T ss_dssp ----CSHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC---CTTHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh---hcCCHHHHHHHHHHH
Confidence 135678899999999998 99999999999887766654444568888998888610 038899999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.... ....++..+|.++...|+.+++.++.....++
T Consensus 442 ~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 442 SKLDP------RSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 88642 22467889999999999999877655544443
No 32
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.48 E-value=2e-11 Score=142.22 Aligned_cols=240 Identities=13% Similarity=-0.005 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.++..+|..+...|++++|...++.+.+..|. ...+. .+ +..+...|++.+|...+.+++.+.+ +
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~---~l-~~~~~~~~~~~~A~~~~~~~~~~~~-----~- 308 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT---PNSYI---FL-ALTLADKENSQEFFKFFQKAVDLNP-----E- 308 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---HHHHH---HH-HHHTCCSSCCHHHHHHHHHHHHHCT-----T-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC---chHHH---HH-HHHHHHhcCHHHHHHHHHHHhccCC-----C-
Confidence 4678999999999999999999999999987664 22111 11 1567789999999999999988633 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
...+...+|.++...|++++|++.+++++..... ...++..+|.++...|+++.|+..+.+++.+...
T Consensus 309 --~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---- 376 (537)
T 3fp2_A 309 --YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT---- 376 (537)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Confidence 3567899999999999999999999999885321 2467889999999999999999999999887422
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCC----------CChHH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS----------QNPEA 853 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~----------g~~~~ 853 (924)
...+...+|.++...|+. ++|+..+++++...-...........+..+|.++.. . |++.+
T Consensus 377 --~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~~~~~~ 446 (537)
T 3fp2_A 377 --LPEVPTFFAEILTDRGDF--DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR------QSSQDPTQLDEEKFNA 446 (537)
T ss_dssp --CTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH------HHTC----CCHHHHHH
T ss_pred --ChHHHHHHHHHHHHhCCH--HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH------HhhccchhhhHhHHHH
Confidence 135677899999999998 999999999999887776655444455666666666 5 89999
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 854 Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
|+.++++|++.... ...++..+|.+|...|+.+++.++.....++
T Consensus 447 A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 447 AIKLLTKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999886432 2378899999999999999877655444433
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.48 E-value=4.6e-11 Score=135.97 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.....+|..+...|+|++|...++.+.+..|... ..+. .+ ...+...|++++|...+++++.+.+ +
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~l-~~~~~~~g~~~~A~~~~~~~~~~~~-----~--- 209 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA--ELRE---LR-AECFIKEGEPRKAISDLKAASKLKN-----D--- 209 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCGGGGHHHHHHHHHHHC-----S---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHH---HH-HHHHHHCCCHHHHHHHHHHHHHhCC-----C---
Confidence 3456678888899999999999999998765321 1111 11 1677899999999999999988633 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch------hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV------ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~------~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
...++..++.++...|++++|++.+++++.......... ........+|.++...|++..|+..+.+++.+..
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p- 288 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP- 288 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 357889999999999999999999999986432111110 0112335569999999999999999999988642
Q ss_pred hCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.++.....+...+|.++..+|+. ++|+..+++++..-- ..+.++..+|.++.. .|++++|+.+++
T Consensus 289 -~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~------~~~~~~A~~~~~ 353 (450)
T 2y4t_A 289 -SIAEYTVRSKERICHCFSKDEKP--VEAIRVCSEVLQMEP------DNVNALKDRAEAYLI------EEMYDEAIQDYE 353 (450)
T ss_dssp -SSHHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCc------ccHHHHHHHHHHHHH------hcCHHHHHHHHH
Confidence 34455567888899999999998 999999999987621 134788999999999 899999999999
Q ss_pred HHHHH
Q 002424 860 QASEE 864 (924)
Q Consensus 860 ~A~~~ 864 (924)
+|++.
T Consensus 354 ~al~~ 358 (450)
T 2y4t_A 354 TAQEH 358 (450)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99763
No 34
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.42 E-value=1e-11 Score=137.75 Aligned_cols=274 Identities=12% Similarity=-0.029 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.....+..+-..|.-.-+.-...-.+....+ ...++.++|..+...|+|++|...++++.+..|... ..+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~- 137 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG------DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALM- 137 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHH-
Confidence 3666666666666555554444443433222 257899999999999999999999998888755321 1111
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK----TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL 742 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~----a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd 742 (924)
.+ +..+...|++++|...+++++.+.+... +.... ......++.++...|++++|++.+++++....
T Consensus 138 --~l-~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 208 (365)
T 4eqf_A 138 --AL-AVSYTNTSHQQDACEALKNWIKQNPKYK--YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG---- 208 (365)
T ss_dssp --HH-HHHHHHTTCHHHHHHHHHHHHHHCHHHH--CC-------------------CCHHHHHHHHHHHHHHHHSC----
T ss_pred --HH-HHHHHccccHHHHHHHHHHHHHhCccch--HHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc----
Confidence 11 1577789999999999999888644211 11000 22334568888889999999999998887522
Q ss_pred chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh
Q 002424 743 QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH 822 (924)
Q Consensus 743 ~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~ 822 (924)
......++..+|.++...|++++|+..+.+++.+... .+.++..+|.++...|+. ++|+..+++++...-.
T Consensus 209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p~- 279 (365)
T 4eqf_A 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYSLWNRLGATLANGDRS--EEAVEAYTRALEIQPG- 279 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT-
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCC-
Confidence 1124678899999999999999999999999987432 245788899999999998 9999999999876221
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCH------HHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 823 GGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH------ELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 823 gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~------~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
.+.++..+|.++.. .|++.+|+.++++|++.......+ .....++..++.++...|+.+.+.+
T Consensus 280 -----~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 348 (365)
T 4eqf_A 280 -----FIRSRYNLGISCIN------LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA 348 (365)
T ss_dssp -----CHHHHHHHHHHHHH------HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----chHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 26789999999999 899999999999999998776553 3347889999999999999988665
Q ss_pred HH
Q 002424 897 AA 898 (924)
Q Consensus 897 aa 898 (924)
+.
T Consensus 349 ~~ 350 (365)
T 4eqf_A 349 AN 350 (365)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.42 E-value=1.5e-10 Score=126.41 Aligned_cols=209 Identities=11% Similarity=-0.020 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
....+|..+...|+|++|...++.+.+..|... ..+. .+ +..+...|++++|...+.+++.+.+ . .
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~~-~~~~~~~~~~~~A~~~~~~~~~~~~----~----~ 187 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDA--ELRE---LR-AECFIKEGEPRKAISDLKAASKLKS----D----N 187 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHTTCS----C----C
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch--HHHH---HH-HHHHHHCCCHHHHHHHHHHHHHhCC----C----C
Confidence 355678888999999999999999998766321 1111 11 1677899999999999999988522 1 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch------hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV------ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~------~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
..+...+|.++...|++++|++.+++++.......... ........+|.++...|++++|+..+.+++....
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-- 265 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-- 265 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--
Confidence 47889999999999999999999999987533221111 1123456779999999999999999999988753
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
.++.....+...+|.++...|+. ++|+..+++++..- . ....++..+|.++.. .|++++|+.++++
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~---~---~~~~~~~~~~~~~~~------~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKP--VEAIRICSEVLQME---P---DNVNALKDRAEAYLI------EEMYDEAIQDYEA 331 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC---T---TCHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhC---c---ccHHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 34556667788899999999998 99999999998762 1 125688999999999 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
|++..
T Consensus 332 a~~~~ 336 (359)
T 3ieg_A 332 AQEHN 336 (359)
T ss_dssp HHTTC
T ss_pred HHhcC
Confidence 98764
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.41 E-value=9.5e-12 Score=137.42 Aligned_cols=271 Identities=13% Similarity=-0.037 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.....+..+-..|.-.-+.-...-.+.... ....++.++|.++...|+|++|...++++.+..|.... .+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~- 136 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDP------KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT--ALM- 136 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH--HHH-
Confidence 466666666666665555444443333211 12467888999999999999999999998887653211 111
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT------------EASLRHARTLLAANQFSEAAAVAHSLF 734 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a------------~a~~~~a~ll~~~G~~~eAl~~l~~aL 734 (924)
.+ ...+...|++.+|...+.+++.+.+. +..... ......+.++ ..|++++|++.+++++
T Consensus 137 --~l-~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~ 208 (368)
T 1fch_A 137 --AL-AVSFTNESLQRQACEILRDWLRYTPA----YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAV 208 (368)
T ss_dssp --HH-HHHHHHTTCHHHHHHHHHHHHHTSTT----TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHH
Confidence 11 15677899999999999998886432 211111 0011355555 8899999999999888
Q ss_pred HHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 002424 735 CMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ 814 (924)
Q Consensus 735 ~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~ 814 (924)
..... .....++..+|.++...|+++.|+..+.+++.+... ...++..+|.++...|+. ++|+..+++
T Consensus 209 ~~~p~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~ 276 (368)
T 1fch_A 209 RLDPT----SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQS--EEAVAAYRR 276 (368)
T ss_dssp HHSTT----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred HhCcC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 75221 114778899999999999999999999999987421 246788899999999998 999999999
Q ss_pred HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHH-----HHHHHHHHHHHHhcC
Q 002424 815 ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA-----AEAFYLIAIVFDKLG 889 (924)
Q Consensus 815 aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~-----~~vl~~lA~l~~~lG 889 (924)
++..-- ....++..+|.++.. .|++.+|+.++++|+........+... ..++..+|.++..+|
T Consensus 277 al~~~~------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 277 ALELQP------GYIRSRYNLGISCIN------LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHCT------TCHHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHhCC------CcHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 987521 235688999999999 899999999999999998777555544 789999999999999
Q ss_pred CHHHHHHHH
Q 002424 890 RLAEREEAA 898 (924)
Q Consensus 890 d~~~r~~aa 898 (924)
+.+++..+.
T Consensus 345 ~~~~A~~~~ 353 (368)
T 1fch_A 345 QSDAYGAAD 353 (368)
T ss_dssp CGGGHHHHH
T ss_pred ChHhHHHhH
Confidence 999877643
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3e-11 Score=125.79 Aligned_cols=234 Identities=12% Similarity=-0.015 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++..+|..+...|+|++|...++.+.+.. .+...+.. + +..+...|++.+|...+.+++.+.+... .+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~---~-~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~ 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNN---R-AAAEYEKGEYETAISTLNDAVEQGREMR-AD 74 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHH---H-HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHH---H-HHHHHHcccHHHHHHHHHHHHHhCcccc-cc
Confidence 457889999999999999999999999999876 22222211 1 1677899999999999999999865432 13
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------cccchhHHHHHHHHHHHHHhcCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK--------------------FNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~--------------------~gd~~~~a~al~~la~i~~~~G~ 762 (924)
......+...+|.++...|++++|++.+++++..... .........++..+|.++...|+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 2334789999999999999999999999999873211 11334457789999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcC
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSD 842 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~ 842 (924)
++.|+..+.+++.+... ...+...+|.++..+|+. ++|+..+++++..-- ....++..+|.++..
T Consensus 155 ~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~- 219 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSF--PEAIADCNKAIEKDP------NFVRAYIRKATAQIA- 219 (258)
T ss_dssp HHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCH------HHHHHHHHHHHHHHH-
Confidence 99999999999887532 246788899999999998 999999999987532 125678899999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 843 PSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 843 ~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
.|++.+|+.++++|++.....+......++...++.+
T Consensus 220 -----~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 220 -----VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred -----HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 8999999999999999987776655556666655543
No 38
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.40 E-value=1e-11 Score=134.51 Aligned_cols=202 Identities=13% Similarity=0.010 Sum_probs=170.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|...+.+++...+... +........+.++.++...|++++|++.+++++.......+....+.++..
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHP--EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCH--HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCCh--hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 455678888888888877776433211 222344556778899999999999999999999877666777778999999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL-KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~-~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++...|++++|+.++.+|+.++........ .+.++.++|.++..+|+. ++|+.++++++......++....+.+
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH--HHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 999999999999999999999999988776544 448999999999999998 99999999999999888888889999
Q ss_pred HHHHHHhhhcCCCCCCCCChHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAV-LDPLRQASEELQVLEDHELAAEAFYLIAIV 884 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~A-l~~L~~A~~~f~~l~~~~~~~~vl~~lA~l 884 (924)
++.+|.++.. .|++++| ..++++|+.+++..++......+-....++
T Consensus 239 ~~~lg~~y~~------~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~ 286 (293)
T 2qfc_A 239 YYQRGECLRK------LEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH------cCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHH
Confidence 9999999999 8999999 889999999999999988866665555554
No 39
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.38 E-value=4e-11 Score=114.68 Aligned_cols=158 Identities=15% Similarity=0.061 Sum_probs=148.2
Q ss_pred cccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 740 FNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 740 ~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+++...+.++..+|.++...|+++.|+..+.+++.++...++....+.+...+|.++..+|+. ++|+.++++++...
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLA 79 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH
Confidence 3677888999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002424 820 LGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAA 899 (924)
Q Consensus 820 l~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~ 899 (924)
...++....+.++..+|.++.. .|++++|+.++++|++.+...+++.....++..+|.++...|+.+++.++..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTL------LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999887766
Q ss_pred HHHHHH
Q 002424 900 LFKEYV 905 (924)
Q Consensus 900 ~f~~l~ 905 (924)
...++.
T Consensus 154 ~a~~~~ 159 (164)
T 3ro3_A 154 KHLEIS 159 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655553
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=2.2e-11 Score=128.61 Aligned_cols=240 Identities=13% Similarity=-0.017 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++.+.|..+...|+|++|...++++.+..|...... ..+. ..+...|++.+|...+.+++.. + .++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~l~-----~~~~~~~~~~~A~~~~~~a~~~-~----~~~~~~ 73 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY-NRRA-----VCYYELAKYDLAQKDIETYFSK-V----NATKAK 73 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTH-HHHH-----HHHHHTTCHHHHHHHHHHHHTT-S----CTTTCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH-HHHH-----HHHHHHhhHHHHHHHHHHHHhc-c----CchhHH
Confidence 467889999999999999999999998876543321 1112 5778999999999999999873 2 255556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+...+|.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+. ...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~ 141 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDT------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------TTD 141 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------CCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------CCc
Confidence 78899999999999999999999999988532 224688999999999999999999999998872 122
Q ss_pred HHHHHHHH-HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC---hHHHHHHHHHHH
Q 002424 787 ASATLTLA-ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN---PEAVLDPLRQAS 862 (924)
Q Consensus 787 A~al~~La-~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~---~~~Al~~L~~A~ 862 (924)
..+...+| .++. .+.. ++|+..+++++...-.. ..++..+|.++.. .++ +++|+.++++|+
T Consensus 142 ~~~~~~l~~~~~~-~~~~--~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 142 PKVFYELGQAYYY-NKEY--VKADSSFVKVLELKPNI------YIGYLWRARANAA------QDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHH-TTCH--HHHHHHHHHHHHHSTTC------HHHHHHHHHHHHH------HSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhCccc------hHHHHHHHHHHHH------cCcchhhHHHHHHHHHHH
Confidence 45677788 5554 4555 99999999998764322 4677788888887 555 888999999999
Q ss_pred HHHHhhcC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 863 EELQVLED--HELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 863 ~~f~~l~~--~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+......+ .....+++..+|.+|...|+.+.+.++.....++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99987777 5667789999999999999999987766655544
No 41
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=4.9e-11 Score=135.41 Aligned_cols=233 Identities=10% Similarity=-0.039 Sum_probs=202.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH---------H-H-HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 629 VKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR---------I-L-LLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 629 ~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~---------~-~-~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
...|..+...|+|++|.+.+..+....+..++.. . + .-++...+..+...|+|++|.+++.+++.+.+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4457778889999999999999998877655421 0 1 011111227888999999999999999998776
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+ +......+...++.++...|+++.|++.++.++..+...++....+++...+|.++...|++.+|+..+.+++..+
T Consensus 88 ~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 88 FA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp SC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 65 5555667778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLD 856 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~ 856 (924)
....+....+.+...++.++..+|+. .+|..++++++......++ ....+..+..+|..+.. .+++.+|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~y~~A~~ 237 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNL--AKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE------DKDYKTAFS 237 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS------SSCHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH------HHhHHHHHH
Confidence 99999999999999999999999998 9999999999999887765 57789999999999999 899999999
Q ss_pred HHHHHHHHHHhhcCH
Q 002424 857 PLRQASEELQVLEDH 871 (924)
Q Consensus 857 ~L~~A~~~f~~l~~~ 871 (924)
++.+|++.+...+..
T Consensus 238 ~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 238 YFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhhhhh
Confidence 999999999988764
No 42
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.36 E-value=1.5e-11 Score=133.33 Aligned_cols=192 Identities=12% Similarity=0.032 Sum_probs=167.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK--TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~--a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
..++..|+|.+|..++.+++..... ++... ......++.++...|++++|+..+++++......++....+.++
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEY----HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccC----ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4667888999999988888774221 22222 34455688888899999999999999999766677778889999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRA 829 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A 829 (924)
..+|.+|...|+++.|+.++.+|+.+.... ++....+.++.++|.++..+|+. ++|+.++++++......++....+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y--~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY--EESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999888 78889999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCC-hHHHHHHHHHHHHHHHhhcCHHHHHH
Q 002424 830 RAFIAEAKCLLSDPSFSVSQN-PEAVLDPLRQASEELQVLEDHELAAE 876 (924)
Q Consensus 830 ~a~~~LAr~~la~~~~~~~g~-~~~Al~~L~~A~~~f~~l~~~~~~~~ 876 (924)
.++..+|.++.. .|+ .++|+.++++|+.+++..++......
T Consensus 237 ~~~~~lg~~~~~------~g~~~~~A~~~~~~Al~i~~~~~~~~~~~~ 278 (293)
T 3u3w_A 237 QLYYQRGECLRK------LEYEEAEIEDAYKKASFFFDILEMHAYKEA 278 (293)
T ss_dssp HHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHTTCTGGGGG
T ss_pred HHHHHHHHHHHH------hCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999 885 59999999999999999998765443
No 43
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.35 E-value=2e-10 Score=124.28 Aligned_cols=209 Identities=9% Similarity=-0.084 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
....+.+.+..+...|+|++|...++.+.+..+...............+..+...|++++|...+.+++.+..... |+
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~ 151 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DV 151 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--ch
Confidence 3455667788889999999999999998887554222211111111122566788999999999999998755433 66
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchh-HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVE-NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~-~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
...+.+...+|.++...|+|++|++.+++++..++...+... .+.++..+|.++...|++++|+.++.+|+.++...++
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 667889999999999999999999999999998887665443 3489999999999999999999999999999998888
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHH-HHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMA-SNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~A-l~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
....+.+...+|.++..+|+. ++| ...++.++......++....-..-....
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~--~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 284 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYE--EAEIEDAYKKASFFFDILEMHAYKEALVNKIS 284 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHH
Confidence 888999999999999999999 999 8889999999999999777444433333
No 44
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.35 E-value=1.2e-10 Score=126.01 Aligned_cols=261 Identities=13% Similarity=0.010 Sum_probs=198.7
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
.+..+-.-|.-.-+.-...-.+....+.. .++..++..+...|++++|...++++.+..|.... .+.. +
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~---l 96 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHA------SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV--SWFA---V 96 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCT------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH--HHHH---H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCh------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH--HHHH---H
Confidence 33444444655544443332333222222 34566777888999999999999999987653322 2211 1
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 671 LHERSLHRG-HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 671 ~~~~al~~G-~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
+..+...| ++++|...+++++.+.+. ...++..+|.++...|++++|++.+++++..... ...+
T Consensus 97 -~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~ 161 (330)
T 3hym_B 97 -GCYYLMVGHKNEHARRYLSKATTLEKT--------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------CHLP 161 (330)
T ss_dssp -HHHHHHSCSCHHHHHHHHHHHHTTCTT--------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------CSHH
T ss_pred -HHHHHHhhhhHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------cHHH
Confidence 15778899 999999999999886331 2467889999999999999999999999885332 2455
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH---H
Q 002424 750 LLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL---E 826 (924)
Q Consensus 750 l~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~---~ 826 (924)
+..+|.++...|+++.|+..+.+++.+... ...+...+|.++...|+. ++|+..+++++......++. .
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 162 MLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEW--KTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcccH--HHHHHHHHHHHHHhhhcccccccc
Confidence 677999999999999999999999877532 246788899999999998 99999999999987666554 2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 827 LRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 827 ~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
..+.++..+|.++.. .|++++|+.++++|++.... ...++..+|.++...|+.+++.++
T Consensus 234 ~~~~~~~~la~~~~~------~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 234 KWEPLLNNLGHVCRK------LKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp TCCHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHhhCcc------chHHHHHHHHHHHHhccHHHHHHH
Confidence 336789999999999 89999999999999987532 456889999999999999987764
No 45
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.34 E-value=1.4e-10 Score=125.55 Aligned_cols=204 Identities=8% Similarity=-0.087 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
.+....+.+.+..+...|+|++|...++.+....+...+...........+..+...|++++|...+.+++.+.....
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-- 149 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-- 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--
Confidence 344555667788889999999999999998875443222221111111112566788999999999999999655434
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF-NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~-gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
|....+.+...+|.++...|+|++|++.+++++..++.. ++....+.++..+|.++...|++++|+.++.+|+.++...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 666678899999999999999999999999999988887 6777888999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR 828 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~ 828 (924)
++....+.+...+|.++..+|.. +++|+..+++++......|+....
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~-~~~A~~~~~~Al~i~~~~~~~~~~ 276 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYE-EAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCTGGG
T ss_pred CcHHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999963 489999999999999999985543
No 46
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.33 E-value=5.8e-11 Score=128.39 Aligned_cols=239 Identities=9% Similarity=-0.032 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+...|+|++|...++++.+..|........ +. ..++..|++.+|...+.+++...+ +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~-----~~~~~~~~~~~A~~~~~~~~~~~~-----~--- 88 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI-----GTLVELNKANELFYLSHKLVDLYP-----S--- 88 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHH-HH-----HHHHHHTCHHHHHHHHHHHHHHCT-----T---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHH-HH-----HHHHHhhhHHHHHHHHHHHHHhCc-----C---
Confidence 346778888899999999999999999876644332211 11 455788999999999999988532 1
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 706 KTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...++..+|.++...| ++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+....
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---- 158 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---- 158 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC----
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc----
Confidence 3477899999999999 9999999999988642 2235678899999999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
..+...+|.++...|+. ++|+.++++++...-. ...++..+|.++.. .|++++|+.++++|+..
T Consensus 159 --~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 159 --HLPMLYIGLEYGLTNNS--KLAERFFSQALSIAPE------DPFVMHEVGVVAFQ------NGEWKTAEKWFLDALEK 222 (330)
T ss_dssp --SHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------cccHHHHHHHHHHHHHH
Confidence 24456699999999998 9999999999876422 25788999999999 89999999999999999
Q ss_pred HHhhcCH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 865 LQVLEDH---ELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 865 f~~l~~~---~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
....+.. .....++..+|.++...|+.+++.++.....++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 8776664 333678999999999999999877755554443
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.32 E-value=3.5e-10 Score=123.34 Aligned_cols=280 Identities=13% Similarity=0.033 Sum_probs=204.2
Q ss_pred HHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh---ccCchHHH
Q 002424 588 YLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL---SVSKSRIL 664 (924)
Q Consensus 588 ~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~---~~~~~~~~ 664 (924)
....+.++...|...-+.-.....+....+ ...++..+|..+...|+|++|...++.+.+..| ........
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 40 YYRRATVFLAMGKSKAALPDLTKVIALKMD------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 444445555556554444433222222111 136789999999999999999999999987765 22221110
Q ss_pred H-----H-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 665 L-----L-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 665 ~-----l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
. . ........+...|++.+|...+.++....+ + ...+...++.++...|++++|++.+++++...
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-----W---DAELRELRAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----C---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 0 0 000112677899999999999999988632 1 35788999999999999999999999988631
Q ss_pred HcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 002424 739 KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD------LLKASATLTLAELWLSFGPNHAKMASNLI 812 (924)
Q Consensus 739 ~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~------~~~A~al~~La~l~~~lG~~~~~~Al~lL 812 (924)
.....++..+|.++...|+++.|+..+.+++.+....... .........+|.++...|+. ++|+..+
T Consensus 185 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~ 257 (359)
T 3ieg_A 185 -----SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY--TDATSKY 257 (359)
T ss_dssp -----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHH
Confidence 2235788999999999999999999999998764322111 11122345679999999998 9999999
Q ss_pred HHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHH
Q 002424 813 QQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLA 892 (924)
Q Consensus 813 e~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~ 892 (924)
++++... -.+......++..+|.++.. .|++++|+.+++++++... ....+++.+|.++...|+.+
T Consensus 258 ~~~~~~~--~~~~~~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 258 ESVMKTE--PSVAEYTVRSKERICHCFSK------DEKPVEAIRICSEVLQMEP------DNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHHHHC--CSSHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcC--CCchHHHHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCHH
Confidence 9998764 34666777889999999999 8999999999999998632 22568999999999999999
Q ss_pred HHHHHHHHHHH
Q 002424 893 EREEAAALFKE 903 (924)
Q Consensus 893 ~r~~aa~~f~~ 903 (924)
++.++.....+
T Consensus 324 ~A~~~~~~a~~ 334 (359)
T 3ieg_A 324 EAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 87766554443
No 48
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.31 E-value=3.3e-10 Score=122.21 Aligned_cols=269 Identities=12% Similarity=-0.043 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHH
Q 002424 587 SYLLRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLL 666 (924)
Q Consensus 587 ~~~l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l 666 (924)
.....+..+-..|.-.-+.......+....+ ...++..+|..+...|+|++|...++++.+..|... ..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~- 93 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHA- 93 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHHH-
Confidence 4666666666666655554444433332211 246677889999999999999999999888755321 1111
Q ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH---------HHHH-HH-HHHHcCCHHHHHHHHHHHHH
Q 002424 667 KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA---------SLRH-AR-TLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 667 ~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a---------~~~~-a~-ll~~~G~~~eAl~~l~~aL~ 735 (924)
.+ ...+...|++.+|...++++....+. +....... ...+ +. ++...|++++|++.+++++.
T Consensus 94 --~l-a~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 94 --AL-AVSHTNEHNANAALASLRAWLLSQPQ----YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp --HH-HHHHHHTTCHHHHHHHHHHHHHTSTT----TTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred --HH-HHHHHHcCCHHHHHHHHHHHHHhCCc----cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 11 15677899999999999998876432 21111110 0011 33 46788899999999998887
Q ss_pred HHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 736 MCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 736 ~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
... ....++..+|.++...|+++.|+..+.+++.+... ...+...+|.++...|+. ++|+..++++
T Consensus 167 ~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~--~~A~~~~~~a 232 (327)
T 3cv0_A 167 MNP------NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRP--QEALDAYNRA 232 (327)
T ss_dssp HST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred hCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCH--HHHHHHHHHH
Confidence 532 13678899999999999999999999999877421 246678899999999998 9999999999
Q ss_pred HhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHH------HHHHHHHHHHHHHhcC
Q 002424 816 LPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHEL------AAEAFYLIAIVFDKLG 889 (924)
Q Consensus 816 Lp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~------~~~vl~~lA~l~~~lG 889 (924)
+..... ...++..+|.++.. .|++++|+.++++|+........... ...++..+|.++...|
T Consensus 233 ~~~~~~------~~~~~~~l~~~~~~------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 233 LDINPG------YVRVMYNMAVSYSN------MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHcCCC------CHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 875321 24578899999999 89999999999999998866555444 6789999999999999
Q ss_pred CHHHHHHH
Q 002424 890 RLAEREEA 897 (924)
Q Consensus 890 d~~~r~~a 897 (924)
+.+++...
T Consensus 301 ~~~~A~~~ 308 (327)
T 3cv0_A 301 RPDLVELT 308 (327)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99886654
No 49
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.8e-10 Score=130.73 Aligned_cols=217 Identities=14% Similarity=0.023 Sum_probs=193.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCC---------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVD---------MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D---------~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
......|+|.+|.+.+.+++...+..+... ......++..+|.++...|++++|.+.+.+++......++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456789999999999999998655433110 11234678899999999999999999999999998888777
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhC
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHG 823 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~g 823 (924)
.....+...++.++...|+++.|+..+.+++.++...+.....+.+...||.++...|.. .+|..++++++......+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY--KDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHHHhcc
Confidence 777888999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 824 GLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDH-ELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 824 d~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~-~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
+....+.++..+++++.+ .|++.+|..++++|+.....+.++ ...+.++..++.+|...|+..++-.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHK------LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp CSTHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHH------hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999 999999999999999999999875 56788899999999999999887653
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.28 E-value=4.4e-11 Score=123.89 Aligned_cols=197 Identities=16% Similarity=0.076 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.++|..+...|+|++|...++++.+.-|..... ...+. ..+...|++++|...+++++.+.+ .
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~lg-----~~~~~~g~~~~A~~~~~~al~~~P-------~- 71 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA-LYWLA-----RTQLKLGLVNPALENGKTLVARTP-------R- 71 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-HHHHH-----HHHHHTTCHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHH-----HHHHHcCCHHHHHHHHHHHHHhCC-------C-
Confidence 567899999999999999999999998776532221 11122 577889999999999999998733 2
Q ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 706 KTEASLRHARTLLAA-----------NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~-----------G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
...+...+|.++... |++++|+..++++++.. .....++..+|.++...|++++|+..+.+|+
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN------PRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 357889999999999 99999999999998852 2235788899999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+. .+ ..++..+|.++..+|+. ++|+..+++++..-- ....++..+|.++.. .|++++|
T Consensus 146 ~~~---~~----~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~P------~~~~~~~~la~~~~~------~g~~~~A 204 (217)
T 2pl2_A 146 ALE---DT----PEIRSALAELYLSMGRL--DEALAQYAKALEQAP------KDLDLRVRYASALLL------KGKAEEA 204 (217)
T ss_dssp HHC---CC----HHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHST------TCHHHHHHHHHHHTC-------------
T ss_pred hcc---cc----hHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHHHHHHHHHHH------ccCHHHH
Confidence 986 22 45678899999999998 999999999987521 124678899999999 8999999
Q ss_pred HHHHHHHHH
Q 002424 855 LDPLRQASE 863 (924)
Q Consensus 855 l~~L~~A~~ 863 (924)
+.+++++..
T Consensus 205 ~~~~~~~~~ 213 (217)
T 2pl2_A 205 ARAAALEHH 213 (217)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 998887653
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.25 E-value=1.8e-10 Score=120.22 Aligned_cols=213 Identities=15% Similarity=-0.026 Sum_probs=169.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
+.+..+.+....++..+|..+...|+|++|...++++.+..+.. ...+. .+ ...+...|++++|...+++++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~---~l-a~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 27 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADAHA---AL-AVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh--HHHHH---HH-HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455666778999999999999999999999999999875432 11111 11 15778899999999999999886
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.+ + ...+...++.++...|++++|++.+++++. .+.......++..+|.++...|++++|+..+.+++
T Consensus 101 ~~-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 101 DS-----R---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp CT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Cc-----C---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1 357789999999999999999999998876 23455678899999999999999999999999998
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+... ...+...+|.++...|+. ++|+..+++++.... ....++..++.++.. .|++++|
T Consensus 169 ~~~~~------~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~------~g~~~~A 228 (252)
T 2ho1_A 169 RLNRN------QPSVALEMADLLYKEREY--VPARQYYDLFAQGGG------QNARSLLLGIRLAKV------FEDRDTA 228 (252)
T ss_dssp HHCSC------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTSC------CCHHHHHHHHHHHHH------TTCHHHH
T ss_pred hcCcc------cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc------CcHHHHHHHHHHHHH------ccCHHHH
Confidence 77421 146678899999999998 999999999876321 224567888999998 8999999
Q ss_pred HHHHHHHHHHH
Q 002424 855 LDPLRQASEEL 865 (924)
Q Consensus 855 l~~L~~A~~~f 865 (924)
..+++++.+.+
T Consensus 229 ~~~~~~~~~~~ 239 (252)
T 2ho1_A 229 ASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 99999998765
No 52
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.24 E-value=9.2e-10 Score=121.39 Aligned_cols=217 Identities=8% Similarity=-0.025 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH------HH----HhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL------LK----LQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~------l~----l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
..++.++|.++...|++++|...++++....|......... .. .... ...+..|++.+|...+++++.+
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL-GSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHH-HHHhhcccHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998776443321111 00 0011 2334899999999999999986
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.+... ...+...+|.++...|++++|++.+++++.... ....++..+|.++...|+++.|+..+.+++
T Consensus 211 ~p~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 211 DPTSI------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP------NDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp STTSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33211 357888999999999999999999999987522 225688999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHH-----HHHHHHHHHhhhcCCCCCCCC
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELR-----ARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~-----A~a~~~LAr~~la~~~~~~~g 849 (924)
.+.. ....++..+|.++..+|+. ++|+..+++++.......+.... +.++..+|.++.. .|
T Consensus 279 ~~~~------~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g 344 (368)
T 1fch_A 279 ELQP------GYIRSRYNLGISCINLGAH--REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM------LG 344 (368)
T ss_dssp HHCT------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH------HT
T ss_pred HhCC------CcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH------hC
Confidence 8742 2246778899999999998 99999999999987776555444 7899999999999 89
Q ss_pred ChHHHHHHHHHHHHHHHhh
Q 002424 850 NPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~~l 868 (924)
++++|...++++++.|.+.
T Consensus 345 ~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 345 QSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp CGGGHHHHHTTCHHHHHHH
T ss_pred ChHhHHHhHHHHHHHHHHh
Confidence 9999999999999988753
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.9e-09 Score=123.58 Aligned_cols=128 Identities=12% Similarity=-0.013 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHc
Q 002424 722 QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW-LSF 800 (924)
Q Consensus 722 ~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~-~~l 800 (924)
.+++|+..++.++.. ......++..+|.++...|++++|+..+.+++.+.. .+.....+...+|.+. ...
T Consensus 315 ~~~~A~~~~~~a~~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL---TPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp HHHHHHHHHHHHHHH------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhhc------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHC
Confidence 345566665555543 122244677889999999999999999999987531 2233334455566554 356
Q ss_pred CCChHHHHHHHHHHHHhHHH--------------------hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 801 GPNHAKMASNLIQQALPLIL--------------------GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 801 G~~~~~~Al~lLe~aLp~vl--------------------~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
|.. ++|+..+++++.+-. .... ..+.++..||.++.. .|++++|++++++
T Consensus 386 ~~~--~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p--~~~~~~~~LG~~~~~------~g~~~~A~~~y~k 455 (472)
T 4g1t_A 386 KCE--DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG--ADSEALHVLAFLQEL------NEKMQQADEDSER 455 (472)
T ss_dssp SCH--HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC---CTTHHHHHHHHHHH------HHHCC--------
T ss_pred CCH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 776 889998888875311 1111 124678899999998 8999999999999
Q ss_pred HHHHHHhh
Q 002424 861 ASEELQVL 868 (924)
Q Consensus 861 A~~~f~~l 868 (924)
|++.-...
T Consensus 456 ALe~~~~~ 463 (472)
T 4g1t_A 456 GLESGSLI 463 (472)
T ss_dssp --------
T ss_pred HHhcCCCC
Confidence 99865443
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=1.8e-09 Score=123.87 Aligned_cols=240 Identities=12% Similarity=0.008 Sum_probs=146.6
Q ss_pred HHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH
Q 002424 633 QHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR 712 (924)
Q Consensus 633 ~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~ 712 (924)
..+...|++++|+..++++.+.-|...... ..+.... .......|++.+|..++++++.+.+ + ...+...
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p~~~~~~-~~l~~~~-~~~~~~~~~~~~a~~~~~~al~~~~-----~---~~~~~~~ 252 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNPDNQYLK-VLLALKL-HKMREEGEEEGEGEKLVEEALEKAP-----G---VTDVLRS 252 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCSSCHHHH-HHHHHHH-HHCC------CHHHHHHHHHHHHCS-----S---CHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcCCcchHHH-HHHHHHH-HHHHhhhhHHHHHHHHHHHHHHhCc-----c---HHHHHHH
Confidence 334556888999999999888755322211 1111111 1334567899999999999888522 1 4577889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc------------CC-------hhhhHHHHHHH
Q 002424 713 HARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS------------GN-------AVLGIPYALAS 773 (924)
Q Consensus 713 ~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~------------G~-------~~~Al~~l~~A 773 (924)
+|.++...|++++|++.+++++.... ..+.++..+|.+|... +. +..|+..+.++
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIP------NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999987532 2245566666665432 22 33444444444
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHH
Q 002424 774 LSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEA 853 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~ 853 (924)
+.+-. ..+.+...+|.++..+|+. ++|+..+++++.. ..+......++..+|...... .|+.++
T Consensus 327 ~~~~~------~~~~~~~~lg~~~~~~~~~--~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 390 (472)
T 4g1t_A 327 DEAND------NLFRVCSILASLHALADQY--EEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQ-----MKCEDK 390 (472)
T ss_dssp HHHCT------TTCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHT-----SSCHHH
T ss_pred hhcCC------chhhhhhhHHHHHHHhccH--HHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHH-----CCCHHH
Confidence 44322 1234456799999999998 9999999999864 234445556677777655432 688999
Q ss_pred HHHHHHHHHHHHHhh------------------cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 854 VLDPLRQASEELQVL------------------EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 854 Al~~L~~A~~~f~~l------------------~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
|+.++++|+.+.... .......+++..+|.+|...|+.++|.++-....++
T Consensus 391 Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 391 AIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999998642111 111122467889999999999998877765554444
No 55
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=3.4e-09 Score=110.00 Aligned_cols=206 Identities=11% Similarity=-0.019 Sum_probs=171.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~ 751 (924)
..++..|++.+|...+++++.+. . ...++..+|.++...|++++|++.+++++......+ +......++.
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~---~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELH---K------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---C------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhh---c------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 67789999999999999999863 2 247889999999999999999999999999876543 3344588999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHH--------------------HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFC--------------------QLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la--------------------~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.+|.++...|+++.|+..+.+++.+. +........+.+...+|.++...|+. ++|+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~ 161 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW--PNAVKA 161 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH--HHHHHH
Confidence 99999999999999999999999842 12224556778889999999999998 999999
Q ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH
Q 002424 812 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 812 Le~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~ 891 (924)
+++++...-. ...++..+|.++.. .|++++|+.++++|++... ....++..+|.++...|+.
T Consensus 162 ~~~a~~~~~~------~~~~~~~l~~~~~~------~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 162 YTEMIKRAPE------DARGYSNRAAALAK------LMSFPEAIADCNKAIEKDP------NFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCcc------cHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHhCH------HHHHHHHHHHHHHHHHhhH
Confidence 9999876322 24688999999999 8999999999999988642 2357889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 002424 892 AEREEAAALFKEYVLA 907 (924)
Q Consensus 892 ~~r~~aa~~f~~l~~~ 907 (924)
+++.++.....++...
T Consensus 224 ~~A~~~~~~a~~~~~~ 239 (258)
T 3uq3_A 224 ASALETLDAARTKDAE 239 (258)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9988877766666543
No 56
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.18 E-value=8.9e-10 Score=122.02 Aligned_cols=216 Identities=12% Similarity=0.002 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH---H-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL---L-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~---l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
..++.++|..+...|+|++|...++++.+..|......... . ........+...|++++|..++++++.+.+...
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~- 211 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI- 211 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC-
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc-
Confidence 56789999999999999999999999998876543322111 1 111122677889999999999999998633211
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
...+...+|.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+.-.
T Consensus 212 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~- 279 (365)
T 4eqf_A 212 -----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP------EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG- 279 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 256788999999999999999999999988532 23668999999999999999999999999987422
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH------HHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL------ELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~------~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+.++..+|.++..+|+. ++|+.++++++......++. ...+.++..|++++.. .|+.+.+
T Consensus 280 -----~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a 346 (365)
T 4eqf_A 280 -----FIRSRYNLGISCINLGAY--REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL------MDQPELF 346 (365)
T ss_dssp -----CHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH------HTCHHHH
T ss_pred -----chHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH------cCcHHHH
Confidence 267788999999999999 99999999999988765542 2347788999999988 7888888
Q ss_pred HHHHHHHHHHHH
Q 002424 855 LDPLRQASEELQ 866 (924)
Q Consensus 855 l~~L~~A~~~f~ 866 (924)
....+++++.|+
T Consensus 347 ~~~~~~~l~~~~ 358 (365)
T 4eqf_A 347 QAANLGDLDVLL 358 (365)
T ss_dssp HHHHTTCCGGGT
T ss_pred HHHHHhhHHHHH
Confidence 877777665553
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=4.9e-09 Score=111.40 Aligned_cols=227 Identities=11% Similarity=0.006 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
..++..+|..+...|++++|...++.+.+ .++...+ . .++ ..+.. .|++++|..+++++..+ +
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~-~--~lg-~~~~~g~~~~~~~~~A~~~~~~a~~~----~- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGC-F--NLG-VLYYQGQGVEKNLKKAASFYAKACDL----N- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHH-H--HHH-HHHHHTSSSCCCHHHHHHHHHHHHHT----T-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHH-H--HHH-HHHHcCCCcCCCHHHHHHHHHHHHHC----C-
Confidence 46788999999999999999999999887 1222211 1 111 56677 99999999999999874 2
Q ss_pred CCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh----cCChhhhHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIPYALA 772 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~----~G~~~~Al~~l~~ 772 (924)
...+.+.+|.++.. .|++++|++.+++++.. ....++..+|.++.. .|++++|+.++.+
T Consensus 73 -----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 73 -----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp -----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 35788999999999 99999999999998873 246789999999999 9999999999999
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 002424 773 SLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 848 (924)
Q Consensus 773 AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~ 848 (924)
|+.+- ...+...||.++.. .|+. ++|+..+++++.. ++ ..++..+|.++.... +..
T Consensus 140 a~~~~--------~~~a~~~lg~~~~~~~~~~~~~--~~A~~~~~~a~~~----~~----~~a~~~lg~~~~~g~--~~~ 199 (273)
T 1ouv_A 140 ACDLN--------DGDGCTILGSLYDAGRGTPKDL--KKALASYDKACDL----KD----SPGCFNAGNMYHHGE--GAT 199 (273)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTC--SSC
T ss_pred HHhcC--------cHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC--CCC
Confidence 98742 24677889999988 8887 9999999998754 44 467888999888732 236
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 002424 849 QNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEAAALFKEYV 905 (924)
Q Consensus 849 g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~----lGd~~~r~~aa~~f~~l~ 905 (924)
+++.+|+.++++|.+. +. ..+++.+|.+|.. .|+.+++.++.....+.+
T Consensus 200 ~~~~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899999999999874 33 5688999999999 999888777666555554
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.14 E-value=2.5e-09 Score=112.67 Aligned_cols=209 Identities=9% Similarity=-0.051 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.++|..+...|+|++|...++.+.+ .+......... ...+ +..+...|++++|...+.+++.+.+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~-~~~l-g~~~~~~~~~~~A~~~~~~a~~~~~~-------- 106 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSAD-FEYY-GKILMKKGQDSLAIQQYQAAVDRDTT-------- 106 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHH-HHHH-HHHHHHTTCHHHHHHHHHHHHHHSTT--------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHH-HHHH-HHHHHHcccHHHHHHHHHHHHhcCcc--------
Confidence 3678899999999999999999999987 33211111100 1111 26778999999999999999986331
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...++..+|.++...|++++|++.+++++.. ......++..+|......+++++|+..+.+++.+....
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----- 175 (272)
T 3u4t_A 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI----- 175 (272)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----
Confidence 2468999999999999999999999988763 23346788889944444569999999999998875432
Q ss_pred HHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhhCC--HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~---~~~~~Al~lLe~aLp~vl~~gd--~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
..+...+|.++..+|. . ++|+..+++++......++ ......++..+|.++.. .|++.+|+.++++
T Consensus 176 -~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 176 -YIGYLWRARANAAQDPDTKQ--GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI------NRDKVKADAAWKN 246 (272)
T ss_dssp -HHHHHHHHHHHHHHSTTCSS--CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCcchhh--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 4677789999999998 6 8899999999999877666 45567899999999999 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
|++..
T Consensus 247 al~~~ 251 (272)
T 3u4t_A 247 ILALD 251 (272)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 99865
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.14 E-value=6.1e-10 Score=115.01 Aligned_cols=205 Identities=16% Similarity=0.108 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
.+-.+.++..+|..+...|+|++|...++++.+..+.. ...+. .+ ...+...|++.+|...++++..+.+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~---~l-a~~~~~~~~~~~A~~~~~~~~~~~~---- 88 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED--AIPYI---NF-ANLLSSVNELERALAFYDKALELDS---- 88 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTC--HHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred chhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc--HHHHH---HH-HHHHHHcCCHHHHHHHHHHHHHcCC----
Confidence 44456778899999999999999999999988765432 11111 11 1577889999999999999988632
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+ ...+...++.++...|++++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+...
T Consensus 89 -~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 157 (243)
T 2q7f_A 89 -S---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN- 157 (243)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-
T ss_pred -c---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-
Confidence 1 357788999999999999999999999987532 12557889999999999999999999999877432
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
...+...+|.++...|+. ++|+..+++++.... ....++..+|.++.. .|++.+|+.++++
T Consensus 158 -----~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~------~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 158 -----DTEARFQFGMCLANEGML--DEALSQFAAVTEQDP------GHADAFYNAGVTYAY------KENREKALEMLDK 218 (243)
T ss_dssp -----CHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCTTHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCc------ccHHHHHHHHHHHHH------ccCHHHHHHHHHH
Confidence 235678899999999999 999999999876532 124578899999999 8999999999999
Q ss_pred HHHHH
Q 002424 861 ASEEL 865 (924)
Q Consensus 861 A~~~f 865 (924)
+++..
T Consensus 219 ~~~~~ 223 (243)
T 2q7f_A 219 AIDIQ 223 (243)
T ss_dssp HHHHC
T ss_pred HHccC
Confidence 98754
No 60
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.12 E-value=5.3e-10 Score=115.72 Aligned_cols=184 Identities=17% Similarity=0.069 Sum_probs=147.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+ ||. ...++..+|.++...|++++|+..+++++... .....++..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~-------~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~ 78 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKE-------NPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART------PRYLGGYMV 78 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-------SSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHH
Confidence 5778999999999999999885 222 46789999999999999999999999998852 223668889
Q ss_pred HHHHHHhc-----------CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 753 LAEIHKKS-----------GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 753 la~i~~~~-----------G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+|.++... |++++|+..+.+++.+.- ..+.++..+|.++..+|+. ++|+..+++++..-
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP------RYAPLHLQRGLVYALLGER--DKAEASLKQALALE-- 148 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcc--
Confidence 99999999 999999999999998742 2346778899999999998 99999999998874
Q ss_pred hCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 002424 822 HGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEA 897 (924)
Q Consensus 822 ~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~a 897 (924)
.+ ..+++.+|.++.. .|++++|+..+++|++..- ....++..+|.++...|+.+++.++
T Consensus 149 -~~----~~~~~~la~~~~~------~g~~~~A~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~~~A~~~ 207 (217)
T 2pl2_A 149 -DT----PEIRSALAELYLS------MGRLDEALAQYAKALEQAP------KDLDLRVRYASALLLKGKAEEAARA 207 (217)
T ss_dssp -CC----HHHHHHHHHHHHH------HTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHTC----------
T ss_pred -cc----hHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHH
Confidence 33 5578899999999 8999999999999998632 2346888999999999999886543
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.11 E-value=4.5e-09 Score=106.67 Aligned_cols=206 Identities=15% Similarity=-0.030 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++..+|..+...|++++|...++.+.+..+... ..+. .+ ...+...|++++|...+++++.+.+ +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~---~l-~~~~~~~~~~~~A~~~~~~a~~~~~-----~ 74 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE--LAWL---VR-AEIYQYLKVNDKAQESFRQALSIKP-----D 74 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT-----T
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch--HHHH---HH-HHHHHHcCChHHHHHHHHHHHHhCC-----C
Confidence 4567889999999999999999999999998766321 1111 11 1567889999999999999988632 1
Q ss_pred cchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 703 MDLKTEASLRHARTLLAA-NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~-G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
...+...++.++... |++++|++.+++++. .+.......++..+|.++...|+++.|+..+.+++.....
T Consensus 75 ---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 145 (225)
T 2vq2_A 75 ---SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-- 145 (225)
T ss_dssp ---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--
T ss_pred ---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 356788999999999 999999999999876 2344556788999999999999999999999999876432
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
...+...+|.++...|+. ++|+.++++++...-. .+ ..++..++.++.. .|+.+.|..+++.+
T Consensus 146 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~------~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 146 ----FPPAFKELARTKMLAGQL--GDADYYFKKYQSRVEV-LQ----ADDLLLGWKIAKA------LGNAQAAYEYEAQL 208 (225)
T ss_dssp ----CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHCS-CC----HHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ----CchHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC-CC----HHHHHHHHHHHHh------cCcHHHHHHHHHHH
Confidence 145678899999999998 9999999999875320 22 2345677777777 78899999888887
Q ss_pred HHHH
Q 002424 862 SEEL 865 (924)
Q Consensus 862 ~~~f 865 (924)
...+
T Consensus 209 ~~~~ 212 (225)
T 2vq2_A 209 QANF 212 (225)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 6543
No 62
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.09 E-value=3.1e-09 Score=114.55 Aligned_cols=244 Identities=9% Similarity=-0.037 Sum_probs=180.6
Q ss_pred HHHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHH--
Q 002424 590 LRATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLK-- 667 (924)
Q Consensus 590 l~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~-- 667 (924)
..+.++...|...-+.-.....+....+ ...++..+|..+...|++++|...++.+.+..+...........
T Consensus 60 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 60 SLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 3445555566555444433322332211 14678899999999999999999999999876654432211100
Q ss_pred ------HhhHHH-HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 002424 668 ------LQLLHE-RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 740 (924)
Q Consensus 668 ------l~l~~~-~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~ 740 (924)
..+... .+...|++.+|...+++++...+ + ...+...+|.++...|++++|++.+++++....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-- 203 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-----N---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-- 203 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHST-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-----C---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--
Confidence 000001 35678999999999999988632 1 357889999999999999999999999987522
Q ss_pred ccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 741 NLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 741 gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
....++..+|.++...|+++.|+..+.+++.+... ...+...+|.++..+|+. ++|+..+++++....
T Consensus 204 ----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 204 ----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQY--DLAAKQLVRAIYMQV 271 (327)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHT
T ss_pred ----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCC
Confidence 23568899999999999999999999999887421 245678899999999998 999999999998876
Q ss_pred hhCCHHH------HHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 821 GHGGLEL------RARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 821 ~~gd~~~------~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
...+... ...++..+|.++.. .|++++|...++++++.+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 272 GGTTPTGEASREATRSMWDFFRMLLNV------MNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp TSCC-----CCTHHHHHHHHHHHHHHH------TTCHHHHHHHTTCCSHHHHH
T ss_pred ccccccccchhhcCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhcch
Confidence 5444333 67889999999999 89999999999999888764
No 63
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.07 E-value=6e-07 Score=104.28 Aligned_cols=229 Identities=14% Similarity=0.042 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhh
Q 002424 625 ALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 625 ~~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~ 696 (924)
..+..+||..+.. .+++++|...++.+.+. ++.. .... +. ..+.. .+++.+|..+++++...
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~-a~~~--lg-~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDEL-GQLH--LA-DMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH-HHHH--HH-HHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHH-HHHH--HH-HHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 4678899999988 89999999999988753 2221 1111 11 34444 78999999999998763
Q ss_pred ccCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc-----CChhhhH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-----GNAVLGI 767 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~-----G~~~~Al 767 (924)
+ ...+.+.++.++.. .+++++|+++++++++. +...++..+|.++... +++++|+
T Consensus 253 --~------~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 253 --G------NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--------GNSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp --T------CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--------TCHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred --C------CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 2 34678889999988 89999999999988652 2356888899999887 8999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCC
Q 002424 768 PYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS 846 (924)
Q Consensus 768 ~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~ 846 (924)
.++.+|++. ++ ..+...||.++...|.. .+++|+.++++++.. |+ ..+++.||.++.... +
T Consensus 317 ~~~~~a~~~----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~--g 378 (490)
T 2xm6_A 317 SWYTKSAEQ----GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GE----KAAQFNLGNALLQGK--G 378 (490)
T ss_dssp HHHHHHHHT----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTS--S
T ss_pred HHHHHHHhc----CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHcCC--C
Confidence 999888764 33 35778899998877622 348999999998754 44 568889999988732 2
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 002424 847 VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDK----LGRLAEREEAAALFKEYV 905 (924)
Q Consensus 847 ~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~----lGd~~~r~~aa~~f~~l~ 905 (924)
..+++.+|+.++++|.+. + ...+++.+|.+|.. .+|.+++.++-......+
T Consensus 379 ~~~~~~~A~~~~~~A~~~----~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 379 VKKDEQQAAIWMRKAAEQ----G----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 357899999999999762 3 25688999999998 788888777666655555
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.06 E-value=2.4e-09 Score=130.85 Aligned_cols=171 Identities=18% Similarity=0.046 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+.+.++.+||.++..+|+|++|.+.+++|.+..|..... .. ++ +..+...|++++|...+++++.+.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a---~~--nL-g~~l~~~g~~~eA~~~~~~Al~l~P------ 74 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---HS--NL-ASVLQQQGKLQEALMHYKEAIRISP------ 74 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH---HH--HH-HHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HH--HH-HHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 457889999999999999999999999999987643221 11 12 2677899999999999999999733
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~ 782 (924)
. .+.+++++|.++..+|++++|++.+++++++. ...+.++..+|.++...|++++|+..+.+|+++.-
T Consensus 75 -~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P---- 142 (723)
T 4gyw_A 75 -T-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN------PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP---- 142 (723)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS----
T ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 2 46889999999999999999999999999852 23377899999999999999999999999998742
Q ss_pred cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 783 DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
..+.++.+||.++..+|+. ++|.+.+++++.+...
T Consensus 143 --~~~~a~~~L~~~l~~~g~~--~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 143 --DFPDAYCNLAHCLQIVCDW--TDYDERMKKLVSIVAD 177 (723)
T ss_dssp --CCHHHHHHHHHHHHHTTCC--TTHHHHHHHHHHHHHH
T ss_pred --CChHHHhhhhhHHHhcccH--HHHHHHHHHHHHhChh
Confidence 2356788999999999999 9999999998887644
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.06 E-value=4.9e-09 Score=104.23 Aligned_cols=167 Identities=14% Similarity=0.032 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.++.+||..+..+|+|++|+..++++.+.-|.... .+ .. ++ ..+...|++++|...+.++....+ +
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~-~~--la-~~~~~~~~~~~a~~~~~~~~~~~~-----~- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE--TL-LK--LG-KTYMDIGLPNDAIESLKKFVVLDT-----T- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HH-HH--HH-HHHHHTTCHHHHHHHHHHHHHHCC-----C-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HH-HH--HH-HHHHHCCCHHHHHHHHHHHHhcCc-----h-
Confidence 3578999999999999999999999999988664222 11 11 11 677899999999999999988522 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
...+....+.++...++++.|.+.+.+++.... ....++..+|.++...|++++|+..+.+++.+.-
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p----- 138 (184)
T 3vtx_A 72 --SAEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP----- 138 (184)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----
Confidence 457788999999999999999999999887422 2356788999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..+.+...+|.++..+|+. ++|+..+++++..
T Consensus 139 -~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 -GFIRAYQSIGLAYEGKGLR--DEAVKYFKKALEK 170 (184)
T ss_dssp -TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHT
T ss_pred -hhhhHHHHHHHHHHHCCCH--HHHHHHHHHHHhC
Confidence 2356788999999999998 9999999999864
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.02 E-value=7.8e-09 Score=117.02 Aligned_cols=237 Identities=9% Similarity=-0.083 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC-HHHHHHHHHHHhhhhhccC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH-LKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~-~~~A~~~l~~ll~l~~~~~ 699 (924)
..+...++.++|.++...|+|++|+..++++.++-|... ..|... +..+...|+ +.+|...+++++.+.+
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~--~a~~~~----g~~l~~~g~d~~eAl~~~~~al~l~P--- 163 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFR----RVLLKSLQKDLHEEMNYITAIIEEQP--- 163 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCCHHHHHHHHHHHHHHCT---
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH--HHHHHH----HHHHHHcccCHHHHHHHHHHHHHHCC---
Confidence 345678899999999999999999999999998866322 223211 156678897 9999999999999733
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
. ...+++++|.++...|++++|+..+++++.+- .....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 164 ----~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~ 232 (382)
T 2h6f_A 164 ----K-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232 (382)
T ss_dssp ----T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred ----C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 2 46889999999999999999999999999842 234678999999999999999999999999987422
Q ss_pred hCCcHHHHHHHHHHHHHHHH-cCCChHHHH-----HHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC--Ch
Q 002424 780 LNLDLLKASATLTLAELWLS-FGPNHAKMA-----SNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ--NP 851 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~-lG~~~~~~A-----l~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g--~~ 851 (924)
-..++..+|.++.. .|.. ++| +..+++++.+--. -..+++.+|.++.. .| ++
T Consensus 233 ------~~~a~~~lg~~l~~l~~~~--~eA~~~~el~~~~~Al~l~P~------~~~a~~~l~~ll~~------~g~~~~ 292 (382)
T 2h6f_A 233 ------NNSVWNQRYFVISNTTGYN--DRAVLEREVQYTLEMIKLVPH------NESAWNYLKGILQD------RGLSKY 292 (382)
T ss_dssp ------CHHHHHHHHHHHHHTTCSC--SHHHHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHTT------TCGGGC
T ss_pred ------CHHHHHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHc------cCccch
Confidence 24677889999998 6665 566 4777777764321 23578888888877 55 57
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCH-----HH-HHHHHHHHHHH
Q 002424 852 EAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRL-----AE-REEAAALFKEY 904 (924)
Q Consensus 852 ~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~-----~~-r~~aa~~f~~l 904 (924)
.+|++.++++ .....-..++..+|.+|...|+. .. .++|...|+++
T Consensus 293 ~~a~~~~~~~-------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 293 PNLLNQLLDL-------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHH-------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7887777654 11122346777888888887622 22 25677777766
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.01 E-value=8.8e-09 Score=107.29 Aligned_cols=194 Identities=12% Similarity=-0.018 Sum_probs=158.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++.+|...+++++.+.+ + ...+...++.++...|++++|++.+++++.... ....++..
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~ 110 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDP-----S---SADAHAALAVVFQTEMEPKLADEEYRKALASDS------RNARVLNN 110 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC-----C---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHH
Confidence 677899999999999999988622 1 357889999999999999999999999987522 23678899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++++|+..+.+++. .+.......+...+|.++...|+. ++|+.++++++.... . ...++
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~~--~----~~~~~ 178 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKP--AQAKEYFEKSLRLNR--N----QPSVA 178 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCS--C----CHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCc--c----cHHHH
Confidence 99999999999999999999887 333445567888899999999998 999999999986532 1 25678
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
..+|.++.. .|++++|+.+++++++... ....++..++.++...|+.+++.++.....+.
T Consensus 179 ~~la~~~~~------~g~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 179 LEMADLLYK------EREYVPARQYYDLFAQGGG------QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHTTSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999 8999999999999876432 22457889999999999999877766655443
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.99 E-value=3.1e-06 Score=98.21 Aligned_cols=213 Identities=11% Similarity=-0.006 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhh
Q 002424 625 ALAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMAS 696 (924)
Q Consensus 625 ~~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~ 696 (924)
..+..+||..+.. .+++++|...++.+.+. ++... ...+. ..+.. .+++.+|..+++++...
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a-~~~lg---~~y~~g~~~~~d~~~A~~~~~~a~~~-- 288 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIA-QFRLG---YILEQGLAGAKEPLKALEWYRKSAEQ-- 288 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHH-HHHHH---HHHHHTTTSSCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHH-HHHHH---HHHHCCCCCCCCHHHHHHHHHHHHHc--
Confidence 3578889999886 89999999999987753 22221 11111 34445 89999999999998762
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC---ChhhhHH
Q 002424 697 SVTGVDMDLKTEASLRHARTLLAA-----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG---NAVLGIP 768 (924)
Q Consensus 697 ~~~~~D~~~~a~a~~~~a~ll~~~-----G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G---~~~~Al~ 768 (924)
+ ...+.+.++.++... +++++|+.+++++++. + ...++..+|.++...| ++.+|+.
T Consensus 289 --~------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 289 --G------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G----DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp --T------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred --C------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 2 346888999999888 9999999999998763 2 3568899999998877 7789999
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCC
Q 002424 769 YALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPS 844 (924)
Q Consensus 769 ~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~ 844 (924)
++.+|++. ++ ..+...||.++.. .++. ++|+..+++++. .|+ ..++..||.++....
T Consensus 353 ~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~--~~A~~~~~~A~~----~~~----~~a~~~Lg~~y~~g~- 413 (490)
T 2xm6_A 353 WFRKAAAK----GE----KAAQFNLGNALLQGKGVKKDE--QQAAIWMRKAAE----QGL----SAAQVQLGEIYYYGL- 413 (490)
T ss_dssp HHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHH----TTC----HHHHHHHHHHHHHTS-
T ss_pred HHHHHHHC----CC----HHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHh----CCC----HHHHHHHHHHHHcCC-
Confidence 99988764 33 5788899999987 6666 999999999875 344 568889999998732
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 845 FSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 845 ~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+..+++.+|+.++++|.+.-. .+..-..+...++.++.
T Consensus 414 -g~~~d~~~A~~~~~~A~~~~~---~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 414 -GVERDYVQAWAWFDTASTNDM---NLFGTENRNITEKKLTA 451 (490)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHTTSCH
T ss_pred -CCCCCHHHHHHHHHHHHHCCC---CCcCCHHHHHHHHhcCH
Confidence 236899999999999988641 12234445556665544
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.96 E-value=3.4e-08 Score=100.10 Aligned_cols=194 Identities=12% Similarity=-0.009 Sum_probs=155.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++.+.+ + ...+...++.++...|++++|++.+++++.... ....++..
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~ 81 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDP-----K---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------DSAEINNN 81 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCc-----c---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHH
Confidence 677899999999999999988632 1 256888999999999999999999999987522 23567889
Q ss_pred HHHHHHhc-CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKS-GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~-G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++... |+++.|+..+.+++. .........+...+|.++...|+. ++|+..+++++...-. ...+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~ 149 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQF--GLAEAYLKRSLAAQPQ------FPPA 149 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHSTT------CHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC------CchH
Confidence 99999999 999999999999887 233334456778899999999998 9999999999875321 2567
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKE 903 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~ 903 (924)
+..+|.++.. .|++.+|+.++++++.... .....++..++.++...|+.+.+..+.....+
T Consensus 150 ~~~la~~~~~------~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 150 FKELARTKML------AGQLGDADYYFKKYQSRVE-----VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH------HTCHHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------cCCHHHHHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 8899999999 8999999999999988642 01233567888999999999887665555443
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.95 E-value=6.9e-08 Score=104.79 Aligned_cols=222 Identities=16% Similarity=0.103 Sum_probs=162.8
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+++....+..-++.++..+|+|++|+..++. ........+. .....+...|++++|...+++++.. ..
T Consensus 29 ~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~--~la~~~~~~~~~~~A~~~l~~ll~~--~~- 96 (291)
T 3mkr_A 29 SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVR--MFAEYLASHSRRDAIVAELDREMSR--SV- 96 (291)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHH--HHHHHHHCSTTHHHHHHHHHHHHHS--CC-
T ss_pred CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHH--HHHHHHcCCCcHHHHHHHHHHHHhc--cc-
Confidence 4455455667788999999999999886653 1222222222 1115666889999999999998762 11
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
+|. ...+.+.+|.++...|++++|++.+++ .....++..+|.++.+.|+++.|+..+.+++.+.-
T Consensus 97 --~P~-~~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p- 161 (291)
T 3mkr_A 97 --DVT-NTTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE- 161 (291)
T ss_dssp --CCS-CHHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred --CCC-CHHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-
Confidence 222 357789999999999999999999886 23356888999999999999999999999987741
Q ss_pred hCCcHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHH
Q 002424 780 LNLDLLKASATLTLAELWLS--FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDP 857 (924)
Q Consensus 780 ~g~~~~~A~al~~La~l~~~--lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~ 857 (924)
+. ....++..|.. .|...+++|+.++++++.. .++ .+.+++.+|.++.. .|++++|...
T Consensus 162 --~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~---~~~~~~~la~~~~~------~g~~~eA~~~ 222 (291)
T 3mkr_A 162 --DA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSP---TLLLLNGQAACHMA------QGRWEAAEGV 222 (291)
T ss_dssp --TC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCC---CHHHHHHHHHHHHH------TTCHHHHHHH
T ss_pred --Cc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHH------cCCHHHHHHH
Confidence 11 12233333322 2333449999999999876 333 46689999999999 9999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
+++|++.. ..-.+++..++.++...|+..+
T Consensus 223 l~~al~~~------p~~~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 223 LQEALDKD------SGHPETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHC------TTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhC------CCCHHHHHHHHHHHHHcCCCHH
Confidence 99999864 2345678899999999999765
No 71
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.94 E-value=1.2e-07 Score=100.57 Aligned_cols=193 Identities=10% Similarity=-0.002 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHH----ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH----cCCHHHHHHHHHHHhhhhhc
Q 002424 626 LAHVKLIQHLAV----FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH----RGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 626 ~a~~~La~~~a~----~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~----~G~~~~A~~~l~~ll~l~~~ 697 (924)
.++.++|..+.. .|++++|...++++.+. ++...+. .++ ..+.. .|++.+|..+++++...
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~---~lg-~~~~~g~~~~~~~~~A~~~~~~a~~~--- 107 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGCH---LLG-NLYYSGQGVSQNTNKALQYYSKACDL--- 107 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHH---HHH-HHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHHHH---HHH-HHHhCCCCcccCHHHHHHHHHHHHHc---
Confidence 678999999999 99999999999998865 2222111 111 56677 99999999999999874
Q ss_pred cCCCCcchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh----cCChhhhHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLA----ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK----SGNAVLGIPY 769 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~----~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~----~G~~~~Al~~ 769 (924)
+ ...+...+|.++.. .|++++|++.+++++.. + ...++..+|.++.. .|++++|+.+
T Consensus 108 -~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 108 -K------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp -T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -C------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 2 35789999999999 99999999999999873 2 35678899999998 9999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~ 845 (924)
+.+|+.. +. ..+...||.++.. .|+. ++|+..+++++.. ++ ..++..||.++... .
T Consensus 173 ~~~a~~~----~~----~~a~~~lg~~~~~g~~~~~~~--~~A~~~~~~a~~~----~~----~~a~~~l~~~~~~g--~ 232 (273)
T 1ouv_A 173 YDKACDL----KD----SPGCFNAGNMYHHGEGATKNF--KEALARYSKACEL----EN----GGGCFNLGAMQYNG--E 232 (273)
T ss_dssp HHHHHHT----TC----HHHHHHHHHHHHHTCSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHTT--S
T ss_pred HHHHHHC----CC----HHHHHHHHHHHHcCCCCCccH--HHHHHHHHHHHhC----CC----HHHHHHHHHHHHcC--C
Confidence 9999865 22 4677889999999 8887 9999999998754 44 56888999999863 2
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 002424 846 SVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~ 864 (924)
+..+++++|+.++++|.+.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHc
Confidence 2368899999999999764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.92 E-value=3.4e-09 Score=123.37 Aligned_cols=187 Identities=14% Similarity=-0.054 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 623 DAALAHVKLIQHLAVFKGY-KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y-~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
..+.++..+|..+...|+| ++|...++++.+..|.... .|. .+ +..++..|++++|..++++++.+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~--a~~---~l-g~~~~~~g~~~~A~~~~~~al~~------- 166 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE--AWN---QL-GEVYWKKGDVTSAHTCFSGALTH------- 166 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH--HHH---HH-HHHHHHHTCHHHHHHHHHHHHTT-------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 3467889999999999999 9999999999988664222 111 11 16778899999999999999986
Q ss_pred CcchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc--------CChh
Q 002424 702 DMDLKTEASLRHARTLLAA---------NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS--------GNAV 764 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~---------G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~--------G~~~ 764 (924)
+|. ..++..+|.++... |++++|++.+++++.... ....++..+|.++... |+++
T Consensus 167 ~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 167 CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV------LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 444 48899999999999 999999999999998532 2366889999999999 9999
Q ss_pred hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 765 LGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 765 ~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
+|+..+.+|+.+.-. ....+.++..+|.++..+|+. ++|+..+++++..--. + ..++..++.++..
T Consensus 239 ~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~l~p~--~----~~a~~~l~~~~~~ 304 (474)
T 4abn_A 239 QALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESY--GEALEGFSQAAALDPA--W----PEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHH
Confidence 999999999988321 114467888999999999998 9999999999876322 2 3566777777776
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.91 E-value=9.2e-09 Score=119.71 Aligned_cols=215 Identities=12% Similarity=0.021 Sum_probs=165.8
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCH-HHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHL-KLAQKVCDELGVMASSVTGVDMDLKTEASLRHART 716 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~-~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~l 716 (924)
..++++|+..++.+....+ .....+.. + +..+...|++ ++|..++++++.+.+ . ...+++.+|.+
T Consensus 81 ~~~~~~al~~l~~~~~~~~--~~a~~~~~---l-g~~~~~~g~~~~~A~~~~~~al~~~p-------~-~~~a~~~lg~~ 146 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQ--VEAQALML---K-GKALNVTPDYSPEAEVLLSKAVKLEP-------E-LVEAWNQLGEV 146 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CCHHHHHH---H-HHHHTSSSSCCHHHHHHHHHHHHHCT-------T-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCc--hhHHHHHH---H-HHHHHhccccHHHHHHHHHHHHhhCC-------C-CHHHHHHHHHH
Confidence 3446677776665443222 11122211 1 1577789999 999999999998632 2 36789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc---------CChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 717 LLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS---------GNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 717 l~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~---------G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
+...|++++|++.+++++.. ++. ..++..+|.++... |++++|+..+.+|+.+.-. .+
T Consensus 147 ~~~~g~~~~A~~~~~~al~~-----~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 213 (474)
T 4abn_A 147 YWKKGDVTSAHTCFSGALTH-----CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL------DG 213 (474)
T ss_dssp HHHHTCHHHHHHHHHHHHTT-----CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT------CH
T ss_pred HHHcCCHHHHHHHHHHHHhh-----CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC------CH
Confidence 99999999999999999874 333 48999999999999 9999999999999987532 24
Q ss_pred HHHHHHHHHHHHc--------CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH
Q 002424 788 SATLTLAELWLSF--------GPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR 859 (924)
Q Consensus 788 ~al~~La~l~~~l--------G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~ 859 (924)
.++..||.++..+ |+. ++|+..+++++..-- .....+.+++.+|.++.. .|++++|+.+++
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~p---~~~~~~~~~~~lg~~~~~------~g~~~~A~~~~~ 282 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKIS--QQALSAYAQAEKVDR---KASSNPDLHLNRATLHKY------EESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHCG---GGGGCHHHHHHHHHHHHH------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccchH--HHHHHHHHHHHHhCC---CcccCHHHHHHHHHHHHH------cCCHHHHHHHHH
Confidence 6778899999888 776 999999999987621 011456789999999999 899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 860 QASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 860 ~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
+|++..-. -..++..++.++..+|+.+++-+
T Consensus 283 ~al~l~p~------~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 283 QAAALDPA------WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987532 24678888999999888777554
No 74
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.90 E-value=1.3e-08 Score=104.82 Aligned_cols=192 Identities=14% Similarity=0.057 Sum_probs=148.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++...+ . ...+...++.++...|++++|++.+++++.... ....++..
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~ 96 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENK-------E-DAIPYINFANLLSSVNELERALAFYDKALELDS------SAATAYYG 96 (243)
T ss_dssp -----------CCTTHHHHHTTCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCc-------c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------cchHHHHH
Confidence 577889999999999999987422 1 367889999999999999999999999987522 23678899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|+++.|+..+.+++.+.... ..+...+|.++...|+. ++|+.++++++..... ...++
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~ 162 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQP--KLALPYLQRAVELNEN------DTEAR 162 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTSCH--HHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCc------cHHHH
Confidence 9999999999999999999998875321 35678899999999998 9999999999865321 24578
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
..+|.++.. .|++++|+.++++++.... ....++..+|.++...|+.+++.++.....++
T Consensus 163 ~~l~~~~~~------~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 163 FQFGMCLAN------EGMLDEALSQFAAVTEQDP------GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH------HTCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 899999999 8999999999999987642 22458899999999999999987766655543
No 75
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.90 E-value=5.2e-08 Score=102.37 Aligned_cols=206 Identities=10% Similarity=-0.056 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++++.+..|... ..+. .+ +..+...|++++|..++++++.+.+.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~---~l-a~~~~~~~~~~~A~~~~~~al~~~~~--- 109 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFN---YL-GIYLTQAGNFDAAYEAFDSVLELDPT--- 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH--HHHH---HH-HHHHHHccCHHHHHHHHHHHHhcCcc---
Confidence 456778888888888888888888888888887765321 1111 11 15667888888888888888876321
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
...++..+|.++...|++++|++.+++++.... ....... ..+ +....|+++.|+..+.+++......
T Consensus 110 -----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~--~~~-~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 110 -----YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDPFRSL--WLY-LAEQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp -----CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHH--HHH-HHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred -----ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CChHHHH--HHH-HHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 246778888888888888888888888877422 1111222 222 2355688888888887777654221
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
.. ...++.++...+.. ++|+..+++++...... ....+.++..+|.++.. .|++++|+.++++
T Consensus 178 ~~-------~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~------~g~~~~A~~~~~~ 240 (275)
T 1xnf_A 178 QW-------GWNIVEFYLGNISE--QTLMERLKADATDNTSL--AEHLSETNFYLGKYYLS------LGDLDSATALFKL 240 (275)
T ss_dssp ST-------HHHHHHHHTTSSCH--HHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred hH-------HHHHHHHHHHhcCH--HHHHHHHHHHhcccccc--cccccHHHHHHHHHHHH------cCCHHHHHHHHHH
Confidence 11 12355555445554 78888888877654432 12336778888888888 7888888888888
Q ss_pred HHHH
Q 002424 861 ASEE 864 (924)
Q Consensus 861 A~~~ 864 (924)
|+..
T Consensus 241 al~~ 244 (275)
T 1xnf_A 241 AVAN 244 (275)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8765
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.89 E-value=4.5e-08 Score=97.21 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=133.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+..+|+|++|...+++++.+. |. ...++..+|.++...|++++|+..+..++... .....+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~-------p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~ 78 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKAD-------PN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYYI 78 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------chhHHHHHH
Confidence 67889999999999999999872 22 36789999999999999999999999887642 223667888
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...+++..|...+.+++.+... ...+...+|.++..+|+. ++|+..+++++..-- ..+.++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~~l~~~p------~~~~~~ 144 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV------YADAYYKLGLVYDSMGEH--DKAIEAYEKTISIKP------GFIRAY 144 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhCCc--hhHHHHHHHHHHhcc------hhhhHH
Confidence 999999999999999999998876422 235677899999999998 999999999986521 236689
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
..+|.++.. .|++++|+.++++|++.-
T Consensus 145 ~~lg~~~~~------~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 145 QSIGLAYEG------KGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH------CCCHHHHHHHHHHHHhCC
Confidence 999999999 899999999999998753
No 77
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.88 E-value=1e-07 Score=100.02 Aligned_cols=184 Identities=16% Similarity=-0.041 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|+|++|...++.+.+..|...... ..+. ..+...|++++|...++++..+.+ .++
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~la-----~~~~~~g~~~~A~~~~~~a~~~~~----~~~- 145 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH-LNRG-----IALYYGGRDKLAQDDLLAFYQDDP----NDP- 145 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH-HHHH-----HHHHHTTCHHHHHHHHHHHHHHCT----TCH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHH-HHHH-----HHHHHhccHHHHHHHHHHHHHhCC----CCh-
Confidence 46788999999999999999999999998866432211 1111 567789999999999999988633 121
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...... .+....|++++|+..+++++..... + .....++.++...++...|+..+.+++...... ..
T Consensus 146 ---~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 212 (275)
T 1xnf_A 146 ---FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDK--E-----QWGWNIVEFYLGNISEQTLMERLKADATDNTSL--AE 212 (275)
T ss_dssp ---HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCC--C-----STHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH--HH
T ss_pred ---HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCc--c-----hHHHHHHHHHHHhcCHHHHHHHHHHHhcccccc--cc
Confidence 222222 2346779999999999888774321 1 112346777888888888888888887765432 12
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEA 836 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LA 836 (924)
..+.+...+|.++..+|+. ++|+..+++++..- -.+....+.++..++
T Consensus 213 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~--p~~~~~~~~~~~~l~ 260 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDL--DSATALFKLAVANN--VHNFVEHRYALLELS 260 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC--CTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCC--chhHHHHHHHHHHHH
Confidence 2367788899999999998 99999999997652 223333344444443
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.88 E-value=2e-08 Score=122.73 Aligned_cols=161 Identities=14% Similarity=0.039 Sum_probs=139.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+..+|++++|...+++++.+.+ . .+.+++++|.++..+|++++|++.+++++++. ...+.++..
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P-------~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------P~~~~a~~n 82 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFP-------E-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS------PTFADAYSN 82 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHH
Confidence 788899999999999999999733 2 46889999999999999999999999999852 233778999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++++|+..+.+|+++.- ..+.++.+||.++..+|+. ++|+..+++++.+-- ..+.++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P------~~~~a~~~Lg~~~~~~g~~--~eAi~~~~~Al~l~P------~~~~a~ 148 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINP------AFADAHSNLASIHKDSGNI--PEAIASYRTALKLKP------DFPDAY 148 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCS------CCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CChHHH
Confidence 99999999999999999999998742 2357889999999999998 999999999987521 235688
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
..||.++.. .|++++|.+.+++++++...
T Consensus 149 ~~L~~~l~~------~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 149 CNLAHCLQI------VCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHH------TTCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhHHHh------cccHHHHHHHHHHHHHhChh
Confidence 999999999 89999999999999987653
No 79
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=1e-07 Score=100.64 Aligned_cols=198 Identities=9% Similarity=-0.055 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++..+|..+...|+|++|...++.+.+.+|........... ++ ..++..|++.+|...+++++.+.+. + .
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~--lg-~~~~~~~~~~~A~~~~~~~l~~~p~----~-~ 86 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFY--LA-RAYYQNKEYLLAASEYERFIQIYQI----D-P 86 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHH--HH-HHHHHTTCHHHHHHHHHHHHHHCTT----C-T
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHH--HH-HHHHHhCcHHHHHHHHHHHHHHCCC----C-c
Confidence 5678999999999999999999999999887754321111111 11 6788999999999999999997542 2 2
Q ss_pred hHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcccchhHHHHH--------------HHHHHHHHhcCC
Q 002424 705 LKTEASLRHARTLLA--------ANQFSEAAAVAHSLFCMCYKFNLQVENASVL--------------LLLAEIHKKSGN 762 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~--------~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al--------------~~la~i~~~~G~ 762 (924)
....+++.+|.++.. .|++++|+..+++++..... ......++ ..+|.++...|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN---HELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 267899999999999 99999999999999885332 11222233 889999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSF----------GPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~l----------G~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+..|+..+.+++...- .......++..+|.++..+ |+. ++|+..+++++... .+......+.
T Consensus 164 ~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~--~~A~~~~~~~~~~~---p~~~~~~~a~ 235 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRARQPERY--RRAVELYERLLQIF---PDSPLLRTAE 235 (261)
T ss_dssp HHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHHC---TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhcccchH--HHHHHHHHHHHHHC---CCChHHHHHH
Confidence 9999999999887542 2233557788899999877 665 89999999987653 2323334455
Q ss_pred HHHHHhhhc
Q 002424 833 IAEAKCLLS 841 (924)
Q Consensus 833 ~~LAr~~la 841 (924)
..+++++..
T Consensus 236 ~~l~~~~~~ 244 (261)
T 3qky_A 236 ELYTRARQR 244 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.86 E-value=4e-08 Score=96.01 Aligned_cols=171 Identities=13% Similarity=-0.008 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
+....++..+|..+...|++++|...++.+.+..+.. ...+. .+ ...+...|++++|...+.++..+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~~-~~~~~~~~~~~~A~~~~~~~~~~~~----- 73 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--VDVAL---HL-GIAYVKTGAVDRGTELLERSLADAP----- 73 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--HHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--hHHHH---HH-HHHHHHcCCHHHHHHHHHHHHhcCC-----
Confidence 4567888999999999999999999999877654421 11111 11 1577889999999999999988622
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
+ ...+...++.++...|++++|.+.+++++.... ....++..+|.++...|+++.|+..+.+++.....
T Consensus 74 ~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 142 (186)
T 3as5_A 74 D---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-- 142 (186)
T ss_dssp T---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred C---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--
Confidence 1 357788999999999999999999999987522 23567889999999999999999999999887421
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
...+...+|.++...|+. ++|...+++++...-
T Consensus 143 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 143 ----EGKVHRAIAFSYEQMGRH--EEALPHFKKANELDE 175 (186)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCC
Confidence 146778899999999998 999999999987653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=1.3e-07 Score=97.37 Aligned_cols=161 Identities=12% Similarity=-0.059 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++.++|..+...|+|++|...++.+.+..+.. +...+. .+ +..+...|++++|...+++++.+. |.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~---~~-~~~~~~~~~~~~A~~~~~~al~~~-------p~- 74 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAY---NC-GVCADNIKKYKEAADYFDIAIKKN-------YN- 74 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHH---HH-HHHHHHTTCHHHHHHHHHHHHHTT-------CS-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHH---HH-HHHHHHhhcHHHHHHHHHHHHHhC-------cc-
Confidence 678899999999999999999999999886521 222111 11 167789999999999999999852 22
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
...+...+|.++...|++++|++.+++++........ ....+.++..+|.++...|++++|+..+.+++.+.- ..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p----~~ 150 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS----KK 150 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC----HH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC----Cc
Confidence 6788999999999999999999999999985332111 112347899999999999999999999999987621 11
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 002424 785 LKASATLTLAELWLSFGPN 803 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~ 803 (924)
..+.++..+|.++...|..
T Consensus 151 ~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 1367788888888777764
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.85 E-value=4.6e-08 Score=103.34 Aligned_cols=201 Identities=12% Similarity=0.040 Sum_probs=150.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|...+++++...+ +......+++.+|.++...|++++|++.+++++... .+......++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~ 94 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGR-----THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY---QIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCS-----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-----CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---CCCchhHHHHHH
Confidence 577899999999999999988643 222357899999999999999999999999998853 223345678999
Q ss_pred HHHHHHh--------cCChhhhHHHHHHHHHHHHHhCCcHHHHHHH--------------HHHHHHHHHcCCChHHHHHH
Q 002424 753 LAEIHKK--------SGNAVLGIPYALASLSFCQLLNLDLLKASAT--------------LTLAELWLSFGPNHAKMASN 810 (924)
Q Consensus 753 la~i~~~--------~G~~~~Al~~l~~AL~la~~~g~~~~~A~al--------------~~La~l~~~lG~~~~~~Al~ 810 (924)
+|.++.. .|++..|+..+.+++...-... ....++ ..+|.++...|+. ++|+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~ 169 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE---LVDDATQKIRELRAKLARKQYEAARLYERRELY--EAAAV 169 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH--HHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH--HHHHH
Confidence 9999999 9999999999999887643221 122222 7799999999998 99999
Q ss_pred HHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCC----CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 811 LIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFS----VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 811 lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~----~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
.+++++... .+......+++.+|.++....... ..|++++|+.+++++++.+- +.....++...++.++.
T Consensus 170 ~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~l~~~~~ 243 (261)
T 3qky_A 170 TYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---DSPLLRTAEELYTRARQ 243 (261)
T ss_dssp HHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---TCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHH
Confidence 999998653 222235567777887777511000 02788899999999988663 44445666777777777
Q ss_pred hcCCHH
Q 002424 887 KLGRLA 892 (924)
Q Consensus 887 ~lGd~~ 892 (924)
.+|..+
T Consensus 244 ~~~~~~ 249 (261)
T 3qky_A 244 RLTELE 249 (261)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 666553
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.77 E-value=7.2e-08 Score=99.35 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=118.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+.+++.+.+. .| ..+.+.+|.++...|++++|++.+++++.. ......++..
T Consensus 15 ~~~~~~~~~~~A~~~~~~al~~~~~---~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 81 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYLKLTNN---QD----SVTAYNCGVCADNIKKYKEAADYFDIAIKK------NYNLANAYIG 81 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTT---CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCSHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhccCC---CC----cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CcchHHHHHH
Confidence 6778999999999999999986320 13 356777999999999999999999999863 2336788999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
+|.++...|+++.|+..+.+++.+.-... .....+.+...+|.++..+|+. ++|+..+++++.. ......+.+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~--~~A~~~~~~al~~----~p~~~~~~~ 155 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI--EKAEENYKHATDV----TSKKWKTDA 155 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHTTS----SCHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH--HHHHHHHHHHHhc----CCCcccHHH
Confidence 99999999999999999999998753221 2233456788999999999998 9999999999865 221113566
Q ss_pred HHHHHHhhhc
Q 002424 832 FIAEAKCLLS 841 (924)
Q Consensus 832 ~~~LAr~~la 841 (924)
+..+|.++..
T Consensus 156 ~~~l~~~~~~ 165 (228)
T 4i17_A 156 LYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.77 E-value=2.8e-06 Score=97.97 Aligned_cols=208 Identities=13% Similarity=0.025 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHH----HcCCHHHHHHHHHHHhhhhhccC
Q 002424 627 AHVKLIQHLAVFK---GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSL----HRGHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 627 a~~~La~~~a~~G---~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al----~~G~~~~A~~~l~~ll~l~~~~~ 699 (924)
+..+||..+...| ++++|+..++.+.+.-+. .......+. ..+. ..+++.+|..+++++. + +
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~---~a~~~~~Lg---~~y~~g~~~~~d~~~A~~~~~~aa---~--g 246 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV---TAQRVDSVA---RVLGDATLGTPDEKTAQALLEKIA---P--G 246 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS---CHHHHHHHH---HHHTCGGGSSCCHHHHHHHHHHHG---G--G
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH---HHHHHHHHH---HHHhCCCCCCCCHHHHHHHHHHHc---C--C
Confidence 7899999999999 999999999988765321 111111111 2222 2369999999999986 2 2
Q ss_pred CCCcchHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-----ChhhhHHHHH
Q 002424 700 GVDMDLKTEASLRHART-L--LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-----NAVLGIPYAL 771 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~l-l--~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G-----~~~~Al~~l~ 771 (924)
...+.+++|.+ + ...|++++|+++++++... | ...++..+|.+|. .| ++.+|+.++.
T Consensus 247 ------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 247 ------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp ------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 34678888887 4 5799999999999998752 2 4778899999998 66 9999999999
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCC
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGP---NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVS 848 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~---~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~ 848 (924)
+|. .|+ +.+...||.++.. |. ..+++|+..++.+.. .|+ ..+++.||.++.... +..
T Consensus 312 ~Aa-----~g~----~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~~G~--g~~ 371 (452)
T 3e4b_A 312 KAV-----GRE----VAADYYLGQIYRR-GYLGKVYPQKALDHLLTAAR----NGQ----NSADFAIAQLFSQGK--GTK 371 (452)
T ss_dssp TTT-----TTC----HHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHT----TTC----TTHHHHHHHHHHSCT--TBC
T ss_pred HHh-----CCC----HHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHh----hCh----HHHHHHHHHHHHhCC--CCC
Confidence 887 333 4678889988875 52 134999999999865 454 557889999998742 335
Q ss_pred CChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 002424 849 QNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL 888 (924)
Q Consensus 849 g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l 888 (924)
.++.+|..++++|.+ .+.+. +...++.+...+
T Consensus 372 ~d~~~A~~~~~~A~~----~g~~~----a~~~l~~l~~~~ 403 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKA----QDTPE----ANDLATQLEAPL 403 (452)
T ss_dssp CCHHHHHHHHHHHHT----TCCHH----HHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHH----CCCHH----HHHHHHHHHHhC
Confidence 689999999999865 34432 334455554333
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.75 E-value=4.4e-07 Score=93.89 Aligned_cols=179 Identities=14% Similarity=0.020 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
..++.++|..+...|+|++|...++.+.+.+|........... ++ ..+...|+|.+|...+++++...+. + .
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~--lg-~~~~~~~~~~~A~~~~~~~l~~~P~----~-~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLD--LI-YAYYKNADLPLAQAAIDRFIRLNPT----H-P 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHH--HH-HHHHHTTCHHHHHHHHHHHHHHCTT----C-T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH--HH-HHHHhcCCHHHHHHHHHHHHHHCcC----C-C
Confidence 3567889999999999999999999999988754432211111 11 6778999999999999999987553 2 1
Q ss_pred hHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHcccchh-----------HHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLA------------------ANQFSEAAAVAHSLFCMCYKFNLQVE-----------NASVLLLLAE 755 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~------------------~G~~~eAl~~l~~aL~~~~~~gd~~~-----------~a~al~~la~ 755 (924)
....+++.+|.++.. .|++++|+..+++++........... .......+|.
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245678888888765 57999999999998874332111100 0123367899
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
++...|++..|+..+.+++...- .......++..+|.++..+|+. ++|++.++.+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~--~~A~~~~~~l~ 211 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMN--AQAEKVAKIIA 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 99999999999999999887642 2344567889999999999998 99999988654
No 86
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.72 E-value=1.6e-07 Score=91.73 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=139.7
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+.....+...++..+...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--- 73 (186)
T 3as5_A 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--- 73 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred ccchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---
Confidence 455678899999999999999999999999886531 12367889999999999999999999999988732
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
....+...+|.++...|+. ++|+.++++++..... ...++..+|.++.. .|++++|+.+++++
T Consensus 74 ---~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~------~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 74 ---DNVKVATVLGLTYVQVQKY--DLAVPLLIKVAEANPI------NFNVRFRLGVALDN------LGRFDEAIDSFKIA 136 (186)
T ss_dssp ---TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHH------TTCHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCcH------hHHHHHHHHHHHHH------cCcHHHHHHHHHHH
Confidence 1246678899999999998 9999999999876321 24678899999999 89999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 862 SEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 862 ~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
+.... ....++..+|.++...|+.+++.++.....++
T Consensus 137 ~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 137 LGLRP------NEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88642 12578899999999999999987766665544
No 87
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.72 E-value=4.2e-07 Score=102.81 Aligned_cols=184 Identities=10% Similarity=-0.028 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 625 ALAHVKLIQHLAVFKG-YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~-y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
..++.++|.++...|+ |++|+..++++.+.-|.. ...|... . ..+...|++.+|...+++++.+ ||
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~--~~a~~~~-g---~~~~~~g~~~eAl~~~~kal~l-------dP 197 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN--YQVWHHR-R---VLVEWLRDPSQELEFIADILNQ-------DA 197 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--HHHHHHH-H---HHHHHHTCCTTHHHHHHHHHHH-------CT
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--HHHHHHH-H---HHHHHccCHHHHHHHHHHHHHh-------Cc
Confidence 4788999999999997 999999999999886642 2223211 1 4566789999999999999997 32
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHh-cCChhhh-----HHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKK-SGNAVLG-----IPYALASLSFC 777 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~-~G~~~~A-----l~~l~~AL~la 777 (924)
. -..+++++|.++...|++++|++.+++++.+- .....++..+|.++.. .|..+.| +..+.+|+.+.
T Consensus 198 ~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 198 K-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp T-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred c-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 2 46889999999999999999999999999842 2346788999999999 6665777 47788887764
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
-. -..+...++.++...|...+++|++.++++ . ..-. -..++..||.++..
T Consensus 271 P~------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~----~~~al~~La~~~~~ 321 (382)
T 2h6f_A 271 PH------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHS----SPYLIAFLVDIYED 321 (382)
T ss_dssp TT------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCC----CHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCC----CHHHHHHHHHHHHH
Confidence 22 235778899999888842238998888775 2 1222 24577788888877
No 88
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.70 E-value=2.2e-07 Score=100.74 Aligned_cols=217 Identities=10% Similarity=0.009 Sum_probs=153.7
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 714 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a 714 (924)
....|.|.+|+..++.....-| ....-. . .+..+.++..|++++|...++.. ++. ...+...++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p---~~~~e~-~-~~l~r~yi~~g~~~~al~~~~~~----------~~~-~~~a~~~la 72 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSP---ERDVER-D-VFLYRAYLAQRKYGVVLDEIKPS----------SAP-ELQAVRMFA 72 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSH---HHHHHH-H-HHHHHHHHHTTCHHHHHHHSCTT----------SCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCc---hhhHHH-H-HHHHHHHHHCCCHHHHHHHhccc----------CCh-hHHHHHHHH
Confidence 4568999999998874332211 111111 1 11126788999999998755331 222 568888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 794 (924)
.++...|++++|++.+++++.. +.......++..+|.++...|+++.|+..+.+ . ....+...+|
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~---~~~~~~~~l~ 137 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSR----SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------G---DSLECMAMTV 137 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHS----CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------C---CSHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhc----ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------C---CCHHHHHHHH
Confidence 9999999999999999988762 21233467899999999999999999999877 1 2235677899
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHH
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELA 874 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~ 874 (924)
.++..+|+. ++|...+++++..- -.+. .......+..++.. .|++++|+..++++++.+- .-
T Consensus 138 ~~~~~~g~~--~~A~~~l~~~~~~~--p~~~--~~~l~~a~~~l~~~------~~~~~eA~~~~~~~l~~~p------~~ 199 (291)
T 3mkr_A 138 QILLKLDRL--DLARKELKKMQDQD--EDAT--LTQLATAWVSLAAG------GEKLQDAYYIFQEMADKCS------PT 199 (291)
T ss_dssp HHHHHTTCH--HHHHHHHHHHHHHC--TTCH--HHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHSC------CC
T ss_pred HHHHHCCCH--HHHHHHHHHHHhhC--cCcH--HHHHHHHHHHHHhC------chHHHHHHHHHHHHHHhCC------Cc
Confidence 999999998 99999999997662 1121 11111112233334 6889999999999988632 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002424 875 AEAFYLIAIVFDKLGRLAEREEAAAL 900 (924)
Q Consensus 875 ~~vl~~lA~l~~~lGd~~~r~~aa~~ 900 (924)
..++..+|.++...|+.+++.++...
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56889999999999999997774443
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=3.6e-07 Score=98.75 Aligned_cols=170 Identities=16% Similarity=0.103 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+..+|..+...|++++|.+.++++.+..|...... ..+. ..++..|++++|...++++... +|.
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~la-----~~~~~~g~~~~A~~~l~~~~~~-------~p~ 183 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIG-LLLA-----ETLIALNRSEDAEAVLXTIPLQ-------DQD 183 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHH-HHHH-----HHHHHTTCHHHHHHHHTTSCGG-------GCS
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHH-HHHH-----HHHHHCCCHHHHHHHHHhCchh-------hcc
Confidence 35678899999999999999999999998877432211 1122 6788999999999999998775 232
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
........+..+...|+.++|++.+++++.. ......++..+|.++...|+++.|+..+.+++...-..
T Consensus 184 -~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---- 252 (287)
T 3qou_A 184 -TRYQGLVAQIELLXQAADTPEIQQLQQQVAE------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---- 252 (287)
T ss_dssp -HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG----
T ss_pred -hHHHHHHHHHHHHhhcccCccHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----
Confidence 4456667777788999999999999988874 23346789999999999999999999999998874322
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
..+.++..|+.++..+|+. ++|...++++|..++
T Consensus 253 ~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al~~~l 286 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGTG--DALASXYRRQLYALL 286 (287)
T ss_dssp GGGHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhh
Confidence 2357788999999999998 899999999987754
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=5.3e-07 Score=109.70 Aligned_cols=192 Identities=18% Similarity=0.130 Sum_probs=143.6
Q ss_pred HHccCHHHHHHHHHHHH--------HHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHH
Q 002424 636 AVFKGYKEAFSALKIAE--------EKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKT 707 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~--------~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a 707 (924)
...|+|++|++.++++. +..+.... .+. . . ...++..|++++|...+++++.+.+ + ..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~--~~~-~--~-a~~~~~~g~~~~A~~~~~~al~~~p-----~---~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVE--LPL-M--E-VRALLDLGDVAKATRKLDDLAERVG-----W---RW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSH--HHH-H--H-HHHHHHHTCHHHHHHHHHHHHHHHC-----C---CH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchh--HHH-H--H-HHHHHhcCCHHHHHHHHHHHhccCc-----c---hH
Confidence 57899999999999988 33332211 111 1 1 1577889999999999999998633 1 36
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
.+++.+|.++...|++++|++.++++++... ....++..+|.++...|++++ +..+.+|+.+.-. .+
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------~~ 534 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFP------GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG------VI 534 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------hH
Confidence 8899999999999999999999999998532 236678899999999999999 9999999987422 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH-HHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV-LDPLRQASEELQ 866 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A-l~~L~~A~~~f~ 866 (924)
.++..+|.++..+|+. ++|+..+++++..- . .-+.++..+|.+++. .+.+.++ .+-+++|.+.+.
T Consensus 535 ~a~~~lg~~~~~~g~~--~~A~~~~~~al~l~----P--~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 535 SAAFGLARARSAEGDR--VGAVRTLDEVPPTS----R--HFTTARLTSAVTLLS------GRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHTSCTTS----T--THHHHHHHHHHHTC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHhhcccC----c--ccHHHHHHHHHHHHc------cCCCCCCCHHHHHHHHHHHh
Confidence 5778899999999998 99999999987542 2 235677888888877 4443444 566777777776
Q ss_pred hh
Q 002424 867 VL 868 (924)
Q Consensus 867 ~l 868 (924)
++
T Consensus 601 ~~ 602 (681)
T 2pzi_A 601 AL 602 (681)
T ss_dssp TS
T ss_pred hC
Confidence 66
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.61 E-value=2.3e-07 Score=94.96 Aligned_cols=161 Identities=13% Similarity=0.059 Sum_probs=119.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLR----------------HARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~----------------~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..++..|++++|...+++++.+ ||. ...+++. +|.++...|++++|+..+++++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~-------~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL-------NID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------CHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556778888888888877775 222 3445555 999999999999999999999985
Q ss_pred HHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 737 CYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 737 ~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
. .....++..+|.++...|++++|+..+.+++.+.-. .+.++..||.++...|..+.+.+...++.++
T Consensus 84 ~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 84 A------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp C------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 2 223678999999999999999999999999987422 2467788999987777653355555555543
Q ss_pred hHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 817 PLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 817 p~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
. .+.. ..+++.+|.++.. .|++.+|+.++++|++.+-
T Consensus 152 ~-----~~~~--~~a~~~~g~~~~~------~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 152 S-----PTKM--QYARYRDGLSKLF------TTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp C-----CCHH--HHHHHHHHHHHHH------HHTHHHHHHHHHHHTTTSC
T ss_pred C-----CCch--hHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCC
Confidence 2 2322 3356667777777 7899999999999998764
No 92
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.50 E-value=2.4e-06 Score=99.56 Aligned_cols=150 Identities=9% Similarity=-0.059 Sum_probs=120.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
....+..+..+|+|++|..++++++++... ++..+...+. ++.++..+..+|+|++|..++++++.+...+-+.+-..
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344455567899999999999999997655 4554433332 44444888999999999999999999876554444344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccc-hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQ-VENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~-~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+..++++|.++..+|+|++|..++++++++... .|.. ...+.++.++++++...|.+..|...+.++.+.|
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998776 4544 4567788999999999999999999999887665
No 93
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.49 E-value=5.3e-07 Score=97.10 Aligned_cols=218 Identities=9% Similarity=-0.075 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHh-hHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQ-LLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~-l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
++.+..+...|.-+ .-+++.+|.+.|.++.+.-|+..+...+.+... .........++..++...+++.+.+.+..-.
T Consensus 4 ~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 4 TDRLASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred hHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 34555666666665 579999999999999998776555332222100 0013444455566777777777664332110
Q ss_pred C-----------C--cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 701 V-----------D--MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 701 ~-----------D--~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
. + ......+.+..+.++...|+|++|.+.++.++. +.+ ... +...+|.++.+.|++..|+
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p-~~~-~~~~~a~l~~~~~r~~dA~ 155 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGS-EHL-VAWMKAVVYGAAERWTDVI 155 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTC-HHH-HHHHHHHHHHHTTCHHHHH
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCC-chH-HHHHHHHHHHHcCCHHHHH
Confidence 0 0 112457778899999999999999999987765 333 334 8899999999999999999
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC--HHHHHHHHHHHHHhhhcCCCC
Q 002424 768 PYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG--LELRARAFIAEAKCLLSDPSF 845 (924)
Q Consensus 768 ~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd--~~~~A~a~~~LAr~~la~~~~ 845 (924)
..+.++... .++.....+...||.++..+|+. ++|+..+++++. |. +.....+.+.+|.|+..
T Consensus 156 ~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~--~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~---- 220 (282)
T 4f3v_A 156 DQVKSAGKW----PDKFLAGAAGVAHGVAAANLALF--TEAERRLTEAND-----SPAGEACARAIAWYLAMARRS---- 220 (282)
T ss_dssp HHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHH----
T ss_pred HHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCH--HHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHH----
Confidence 999765433 25556677889999999999997 999999999872 22 32355677888999999
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 002424 846 SVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 846 ~~~g~~~~Al~~L~~A~~~ 864 (924)
.|+.++|...|+++++.
T Consensus 221 --lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 221 --QGNESAAVALLEWLQTT 237 (282)
T ss_dssp --HTCHHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHhc
Confidence 89999999999999874
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.49 E-value=2.6e-07 Score=112.49 Aligned_cols=183 Identities=12% Similarity=-0.060 Sum_probs=139.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhhh-hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMA-SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~-~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+..|++.+|.+.+++++... ......+|. ...+++.+|.++...|++++|++.++++++... ....++..
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~ 472 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERVG------WRWRLVWY 472 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------chHHHHHH
Confidence 3478999999999999998100 000000221 457899999999999999999999999988532 23678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|.++...|++++|+..+.+|+.+.-.. +.++..+|.++..+|+. ++ +..+++++..-- . .+.++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P--~----~~~a~ 537 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNT--DE-HKFYQTVWSTND--G----VISAA 537 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCT--T----CHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCC--c----hHHHH
Confidence 9999999999999999999999885322 46778899999999999 88 999999976521 1 24588
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
+.+|.++.. .|++++|+.++++|++.- ..-..+++.+|.++...|+
T Consensus 538 ~~lg~~~~~------~g~~~~A~~~~~~al~l~------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 538 FGLARARSA------EGDRVGAVRTLDEVPPTS------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHTSCTTS------TTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHH------cCCHHHHHHHHHhhcccC------cccHHHHHHHHHHHHccCC
Confidence 999999999 899999999999887542 2335677788888766665
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.48 E-value=3.9e-06 Score=86.67 Aligned_cols=172 Identities=10% Similarity=-0.030 Sum_probs=129.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+++++...+ +......+.+.+|.++...|++++|++.+++++.... +......++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P---~~~~~~~a~~~ 83 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYP-----FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP---THPNIDYVMYM 83 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-----TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCcHHHHHHH
Confidence 567889999999999999998643 1122568899999999999999999999999987432 22233456777
Q ss_pred HHHHHHh------------------cCChhhhHHHHHHHHHHHHHhCCc-----------HHHHHHHHHHHHHHHHcCCC
Q 002424 753 LAEIHKK------------------SGNAVLGIPYALASLSFCQLLNLD-----------LLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 753 la~i~~~------------------~G~~~~Al~~l~~AL~la~~~g~~-----------~~~A~al~~La~l~~~lG~~ 803 (924)
+|.++.. .|++++|+..+.+++...-..... ...+.....+|.++...|+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 7777765 678999999998877653221111 01122335688899999998
Q ss_pred hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 804 HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 804 ~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
++|+..+++++... .+......++..+|.++.. .|++++|+.+++.+..
T Consensus 164 --~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~------~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 164 --VAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQ------MQMNAQAEKVAKIIAA 212 (225)
T ss_dssp --HHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHH------cCCcHHHHHHHHHHHh
Confidence 99999999987653 3333456789999999999 9999999999987754
No 96
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.47 E-value=2.9e-06 Score=98.88 Aligned_cols=146 Identities=9% Similarity=0.019 Sum_probs=121.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cc-cchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~g-d~~~~a~al 750 (924)
..+..+|+|++|+.++++++.+...+-+.+-...+.++.+++.++..+|+|++|..++++++++..+ .| +....+..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4556899999999999999998765543343347899999999999999999999999999998776 33 335568899
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NL-DLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~-~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.++|.+|...|++++|..++.+|+.+.... |. ....+..+..|+.++..+|.. ++|..++.++...++
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~--~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF--RQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999554 54 456777788899999889887 999999988865553
No 97
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.45 E-value=8.7e-06 Score=88.34 Aligned_cols=224 Identities=10% Similarity=0.002 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHhhHH---HHHHHcCCH-------HHHHHHHHHHhh-hhhccCCCCcchHHHHH
Q 002424 642 KEAFSALKIAEEKFLSVSKSRILLLKLQLLH---ERSLHRGHL-------KLAQKVCDELGV-MASSVTGVDMDLKTEAS 710 (924)
Q Consensus 642 ~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~---~~al~~G~~-------~~A~~~l~~ll~-l~~~~~~~D~~~~a~a~ 710 (924)
++|...++++....|... .+|.-...... ......|++ ++|...+++++. +.+ + ...++
T Consensus 33 ~~a~~~~~~al~~~p~~~--~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-----~---~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHP--DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----K---NMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-----T---CHHHH
T ss_pred HHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-----c---cHHHH
Confidence 678888998888776432 23332211100 011246885 999999999988 422 1 35688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASAT 790 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al 790 (924)
...+.++...|++++|.+.+++++.. .+.....++..+|.++.+.|+++.|+..+.+|+.+.... ..+.
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~ 171 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR------HHVY 171 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHH
Confidence 89999999999999999999999873 121111288899999999999999999999998764211 2223
Q ss_pred HHHHHHHH-HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhc
Q 002424 791 LTLAELWL-SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLE 869 (924)
Q Consensus 791 ~~La~l~~-~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~ 869 (924)
...+.+.. ..|+. ++|+.++++++...- + ...++..+|..+.. .|++++|+..+++|+.... -
T Consensus 172 ~~~a~~~~~~~~~~--~~A~~~~~~al~~~p---~---~~~~~~~~~~~~~~------~g~~~~A~~~~~~al~~~~--l 235 (308)
T 2ond_A 172 VTAALMEYYCSKDK--SVAFKIFELGLKKYG---D---IPEYVLAYIDYLSH------LNEDNNTRVLFERVLTSGS--L 235 (308)
T ss_dssp HHHHHHHHHTSCCH--HHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHSSS--S
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHH------CCCHHHHHHHHHHHHhccC--C
Confidence 33343322 26887 999999999987642 2 35678888988888 8999999999999986310 0
Q ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 870 DHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 870 ~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
.+.....++...+.+....|+.+.+........
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222345677778888889999988765444433
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.44 E-value=3.3e-06 Score=86.26 Aligned_cols=169 Identities=11% Similarity=-0.068 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHH-----------HHHHhhHHHHHHHcCCHHHHHHHHHHHhhh
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRIL-----------LLKLQLLHERSLHRGHLKLAQKVCDELGVM 694 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~-----------~l~l~l~~~~al~~G~~~~A~~~l~~ll~l 694 (924)
..+...|..+...|+|++|...++++.+..|.......+ .+...+ +..+...|++++|...+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL-ALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHH
Confidence 456778889999999999999999999887643221111 011112 26778999999999999999987
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh--hhHHHHHH
Q 002424 695 ASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--LGIPYALA 772 (924)
Q Consensus 695 ~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~--~Al~~l~~ 772 (924)
.+ . ...+++.+|.++...|++++|++.+++++... .....++..+|.++...|+.. .+...+.+
T Consensus 84 ~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 84 AP-------N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE------ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp CT-------T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 32 2 35889999999999999999999999999852 233678889999987766543 23333333
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 773 SLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 773 AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
++ .+.....+...+|.++..+|.. ++|+..+++++..
T Consensus 150 ~~-------~~~~~~~a~~~~g~~~~~~~~~--~~A~~~~~~al~l 186 (208)
T 3urz_A 150 LS-------SPTKMQYARYRDGLSKLFTTRY--EKARNSLQKVILR 186 (208)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHTH--HHHHHHHHHHTTT
T ss_pred Hh-------CCCchhHHHHHHHHHHHHccCH--HHHHHHHHHHHHh
Confidence 32 1222223455677777778887 9999999999865
No 99
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.43 E-value=7.9e-06 Score=88.69 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHH-HhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHH
Q 002424 641 YKEAFSALKIAEE-KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLA 719 (924)
Q Consensus 641 y~eA~~~L~~a~~-~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~ 719 (924)
+++|...+++|.+ ..|. ...+|.... ......|++++|...+++++.+.+ .++ ..++...+.++.+
T Consensus 80 ~~~A~~~~~rAl~~~~p~--~~~~~~~~~----~~~~~~~~~~~A~~~~~~al~~~p----~~~---~~~~~~~~~~~~~ 146 (308)
T 2ond_A 80 SDEAANIYERAISTLLKK--NMLLYFAYA----DYEESRMKYEKVHSIYNRLLAIED----IDP---TLVYIQYMKFARR 146 (308)
T ss_dssp HHHHHHHHHHHHTTTTTT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHTSSS----SCT---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcc--cHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhccc----cCc---cHHHHHHHHHHHH
Confidence 4999999999998 3442 222343221 456789999999999999998522 232 1378899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 720 ~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
.|++++|...+++++.... .. ..+....+.+.. ..|+++.|+..+.+++.+.-. ...+...++.++.
T Consensus 147 ~~~~~~A~~~~~~a~~~~p----~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~ 214 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDAR----TR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLS 214 (308)
T ss_dssp HHCHHHHHHHHHHHHTSTT----CC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCC----CC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHH
Confidence 9999999999999987421 11 344445555533 379999999999999987532 2466788999999
Q ss_pred HcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHh
Q 002424 799 SFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQV 867 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~ 867 (924)
.+|+. ++|+.++++++... .-++.....++..++..... .|+.++|...+++|.+.+-.
T Consensus 215 ~~g~~--~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~------~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 215 HLNED--NNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESN------IGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp TTCCH--HHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHTTT
T ss_pred HCCCH--HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHccc
Confidence 99998 99999999997631 00212234566667777777 79999999999999988753
No 100
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.42 E-value=0.0013 Score=76.69 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHH----HHcCCHH-------HHHHHHHHHhh-hhhccCCCCcchHHHH
Q 002424 642 KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERS----LHRGHLK-------LAQKVCDELGV-MASSVTGVDMDLKTEA 709 (924)
Q Consensus 642 ~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~a----l~~G~~~-------~A~~~l~~ll~-l~~~~~~~D~~~~a~a 709 (924)
..|...++++....|.. ..+|.....+. ... -..|+++ +|...+++++. +.+ + ...+
T Consensus 255 ~~a~~~y~~al~~~p~~--~~~w~~~~~~~-~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p-----~---~~~l 323 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHH--PDIWYEAAQYL-EQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-----K---NMLL 323 (530)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHH-HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS-----S---CHHH
T ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHH-HHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc-----c---cHHH
Confidence 47788999999887632 33454331110 110 0279987 89999999886 322 2 4678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 789 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 789 (924)
+...+.++...|++++|.+.+++++.. .+.....+++..+.+..+.|++++|+..+.+|+..... . ..+
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~-----~~~ 392 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-R-----HHV 392 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-C-----THH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-c-----hHH
Confidence 889999999999999999999999873 22222358889999999999999999999999875321 1 111
Q ss_pred HHHHHHH-HHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q 002424 790 TLTLAEL-WLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVL 868 (924)
Q Consensus 790 l~~La~l-~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l 868 (924)
....+.+ +...|+. ++|+.++++++... ++ ...++..++..... .|+.++|...+++|+....
T Consensus 393 ~~~~a~~~~~~~~~~--~~A~~~~e~al~~~---p~---~~~~~~~~~~~~~~------~g~~~~Ar~~~~~al~~~~-- 456 (530)
T 2ooe_A 393 YVTAALMEYYCSKDK--SVAFKIFELGLKKY---GD---IPEYVLAYIDYLSH------LNEDNNTRVLFERVLTSGS-- 456 (530)
T ss_dssp HHHHHHHHHHHTCCH--HHHHHHHHHHHHHH---TT---CHHHHHHHHHHHTT------TTCHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHcCCh--hHHHHHHHHHHHHC---CC---CHHHHHHHHHHHHh------CCCHhhHHHHHHHHHhccC--
Confidence 2222222 2358887 99999999998764 22 24677888888888 8999999999999987421
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002424 869 EDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 869 ~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l 904 (924)
.++.....++..........|+.+.+..+.....+.
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 134444556666677778889998877766655554
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.40 E-value=1.4e-06 Score=86.23 Aligned_cols=166 Identities=13% Similarity=0.059 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
....+|..+...|+|++|...++++.+..|.... .+. .+ ...++..|++++|...+++++.+. + |+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~--a~~---~l-a~~~~~~g~~~~A~~~~~~a~~~~----p-~~--- 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD--VKL---AK-ADCLLETKQFELAQELLATIPLEY----Q-DN--- 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH--HHH---HH-HHHHHHTTCHHHHHHHHTTCCGGG----C-CH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHH---HH-HHHHHHCCCHHHHHHHHHHhhhcc----C-Ch---
Confidence 4678889999999999999999998887664322 111 11 157789999999999999987642 1 32
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 707 TEASLRHARTL-LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 707 a~a~~~~a~ll-~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
......+.+. ...++..+|++.+++++... .....++..+|.++...|++++|+..+.+++.+.-.. .
T Consensus 74 -~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~ 142 (176)
T 2r5s_A 74 -SYKSLIAKLELHQQAAESPELKRLEQELAAN------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA----Q 142 (176)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT----T
T ss_pred -HHHHHHHHHHHHhhcccchHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc----C
Confidence 2223333332 23344556788888887642 2236788999999999999999999999988764221 1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~v 819 (924)
...++..|+.++..+|+. ++|...++++|..+
T Consensus 143 ~~~a~~~l~~~~~~~g~~--~~A~~~y~~al~~~ 174 (176)
T 2r5s_A 143 DGEVKKTFMDILSALGQG--NAIASKYRRQLYSI 174 (176)
T ss_dssp TTHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHH
Confidence 235678899999999999 99999999988654
No 102
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=3.1e-06 Score=85.58 Aligned_cols=139 Identities=13% Similarity=-0.015 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+..+.++|..+...|+|++|...++++... ....+ ..++ ..+...|++.+|...+.+++.+.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~~~~~---~~lg-~~~~~~g~~~~A~~~~~~al~~~~------ 68 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP-----HSRIC---FNIG-CMYTILKNMTEAEKAFTRSINRDK------ 68 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-----CHHHH---HHHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-----ChHHH---HHHH-HHHHHcCCHHHHHHHHHHHHHhCc------
Confidence 45677889999999999999999999977311 11111 1122 677899999999999999998632
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc----------cchhHHHHHHHHHHHHHhcCChhhhHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN----------LQVENASVLLLLAEIHKKSGNAVLGIPYALA 772 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g----------d~~~~a~al~~la~i~~~~G~~~~Al~~l~~ 772 (924)
. ...+++++|.++...|++++|++.+++++....... .......++..+|.++...|+++.|+..+.+
T Consensus 69 -~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 69 -H-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -c-chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1 357899999999999999999999999998655433 3345678999999999999999999999999
Q ss_pred HHHHHH
Q 002424 773 SLSFCQ 778 (924)
Q Consensus 773 AL~la~ 778 (924)
++.+..
T Consensus 147 al~~~p 152 (213)
T 1hh8_A 147 ATSMKS 152 (213)
T ss_dssp HHTTCC
T ss_pred HHHcCc
Confidence 988754
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.39 E-value=1.1e-05 Score=77.59 Aligned_cols=143 Identities=13% Similarity=-0.042 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCC
Q 002424 622 SDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGV 701 (924)
Q Consensus 622 d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~ 701 (924)
...+..+..+|..+...|+|++|...++.+....+.. ...+. .++ ..+...|++.+|...+.+++.+.+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~---~~a-~~~~~~~~~~~A~~~~~~a~~~~~----- 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYG---NRS-LAYLRTECYGYALGDATRAIELDK----- 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHH---HHH-HHHHHcCCHHHHHHHHHHHHHhCc-----
Confidence 3567888999999999999999999999999876532 11111 111 577889999999999999998632
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
. ...+...+|.++...|++++|++.+++++.. ......+.....++.++...|++.+|+..+.++..+.....
T Consensus 79 --~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 79 --K-YIKGYYRRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLD 151 (166)
T ss_dssp --T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred --c-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccc
Confidence 1 3578899999999999999999999999875 23334455667777778899999999999998888876554
Q ss_pred C
Q 002424 782 L 782 (924)
Q Consensus 782 ~ 782 (924)
.
T Consensus 152 ~ 152 (166)
T 1a17_A 152 I 152 (166)
T ss_dssp C
T ss_pred h
Confidence 3
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.37 E-value=1.3e-06 Score=103.39 Aligned_cols=158 Identities=8% Similarity=-0.073 Sum_probs=115.8
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH 757 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~ 757 (924)
.|++++|...+++++.+.+ . ...++..+|.++...|++++|++.+++++... .....++..+|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-------Q-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH------PGHPEAVARLGRVR 67 (568)
T ss_dssp --------------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------TTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Confidence 4889999999999887522 1 35789999999999999999999999998742 23367899999999
Q ss_pred HhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHH
Q 002424 758 KKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAK 837 (924)
Q Consensus 758 ~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr 837 (924)
...|++++|+..+.+++.+.-. .+.++..+|.++..+|+. ++|+..+++++..-- . ...++..+|.
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p--~----~~~~~~~l~~ 133 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPE------HPGIALWLGHALEDAGQA--EAAAAAYTRAHQLLP--E----EPYITAQLLN 133 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--T----CHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC--C----CHHHHHHHHH
Confidence 9999999999999999987432 256788899999999998 999999999987632 1 2467888999
Q ss_pred hhhcCCCCCCC---CChHHHHHHHHHHHHHHHhhc
Q 002424 838 CLLSDPSFSVS---QNPEAVLDPLRQASEELQVLE 869 (924)
Q Consensus 838 ~~la~~~~~~~---g~~~~Al~~L~~A~~~f~~l~ 869 (924)
++.. . |+.++|+..+++|++......
T Consensus 134 ~~~~------~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 134 WRRR------LCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHH------TTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHHH------hhccccHHHHHHHHHHHHhcCCccc
Confidence 9998 7 999999999999988765443
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.37 E-value=7e-06 Score=75.00 Aligned_cols=131 Identities=16% Similarity=0.078 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.++..+|..+...|++++|...++++.+..+. ....+. .+ ...+...|++++|..+++++....+ +
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~---~~-a~~~~~~~~~~~A~~~~~~~~~~~~-----~--- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWY---NL-GNAYYKQGDYDEAIEYYQKALELDP-----R--- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHH---HH-HHHHHHHTCHHHHHHHHHHHHHHCT-----T---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHH---HH-HHHHHHhcCHHHHHHHHHHHHHHCC-----C---
Confidence 35778999999999999999999999876542 111111 11 1566789999999999999987532 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
...+...++.++...|++++|++.+++++.... ....++..+|.++...|+++.|...+.+++.+
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 246778899999999999999999999887422 12567888999999999999999999988765
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.35 E-value=1.5e-06 Score=84.23 Aligned_cols=147 Identities=10% Similarity=-0.068 Sum_probs=106.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 630 KLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 630 ~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
+||.++..+|++++|++.++.+...-|.... ..+.++ ..++..|+|++|...+++++.+.+ . ...+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----~~~~la-~~y~~~~~~~~A~~~~~~al~~~p-------~-~~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI-----KGFYFA-KLYYEAKEYDLAKKYICTYINVQE-------R-DPKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT-----THHHHH-HHHHHTTCHHHHHHHHHHHHHHCT-------T-CHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH-----HHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHH
Confidence 5788888899999999999977654432111 111222 678899999999999999998732 2 3688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHH-HHHHHHHHHHhCCcHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPY-ALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~-l~~AL~la~~~g~~~~~A~ 788 (924)
+..+|.++...|++++|+..+++++++. .....++..+|.++...|++..|... +.+|+.+.-. ...
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~------~~~ 135 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELN------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG------SPA 135 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT------CHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC------CHH
Confidence 9999999999999999999999998852 22367889999999999999876654 5788877421 134
Q ss_pred HHHHHHHHHHHcCC
Q 002424 789 ATLTLAELWLSFGP 802 (924)
Q Consensus 789 al~~La~l~~~lG~ 802 (924)
+....+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 45556777766664
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.34 E-value=2.6e-06 Score=91.87 Aligned_cols=160 Identities=16% Similarity=0.050 Sum_probs=128.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++.+.+ . ...+++.+|.++...|++++|.+.+++++.. ++ ........
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p-~~~~~~~~ 190 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSN-------Q-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQ-DTRYQGLV 190 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTT-------S-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GC-SHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCC-------c-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hc-chHHHHHH
Confidence 577899999999999999998633 2 3578999999999999999999999988662 22 22344556
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
.+..+...|+...|+..+.+++.+.- ....++..||.++...|+. ++|+..+++++..--.. ..+.++
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P------~~~~~~~~la~~l~~~g~~--~~A~~~l~~~l~~~p~~----~~~~a~ 258 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP------EDAALATQLALQLHQVGRN--EEALELLFGHLRXDLTA----ADGQTR 258 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCTTG----GGGHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHhccccc----ccchHH
Confidence 66667788888889999988887642 2246788899999999998 99999999998763222 346778
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
..|+.++.. .|+.++|+..+++++..
T Consensus 259 ~~l~~~~~~------~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 259 XTFQEILAA------LGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHH------HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------cCCCCcHHHHHHHHHHH
Confidence 889999998 89999999999998864
No 108
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=5.6e-06 Score=77.75 Aligned_cols=105 Identities=10% Similarity=-0.012 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCC-cH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNL-DL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~-~~ 784 (924)
.+.+..++|..+...|+|++|++.+++++.+.. ..+.++..+|.++...|+++.|+..+.+|+.+...... ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 677888999999999999999999999998522 23678999999999999999999999999999876654 45
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
..+.++..+|.++..+|.. ++|+..++++|..
T Consensus 81 ~~a~~~~~lg~~~~~~~~~--~~A~~~~~kal~~ 112 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDL--SLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh
Confidence 6788999999999999998 9999999998753
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.32 E-value=1e-05 Score=82.96 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=122.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHcccchhHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN----QFSEAAAVAHSLFCMCYKFNLQVENAS 748 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G----~~~eAl~~l~~aL~~~~~~gd~~~~a~ 748 (924)
..+...|++.+|..+++++... + ...+.++++.++.. | ++++|+++++++.. .+...
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~----g------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--------~g~~~ 86 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQ----G------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--------AGSKS 86 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----T------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--------TTCHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHc----C------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--------CCCHH
Confidence 4566789999999999998763 2 35788899999887 7 99999999999854 23467
Q ss_pred HHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHH
Q 002424 749 VLLLLAEIHKK----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 749 al~~la~i~~~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl 820 (924)
++..+|.+|.. .+++.+|+.++.+|+.. +.....+.+...||.++.. .++. ++|+..+++++..
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~A~~~-- 158 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDD--VKASEYFKGSSSL-- 158 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCH--HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCH--HHHHHHHHHHHHc--
Confidence 88899999987 88999999999887653 3333446788899999987 5555 9999999999654
Q ss_pred hhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 821 GHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 821 ~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
.|+. .+++.||.++.....-....++.+|+.++++|.+.
T Consensus 159 -~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 159 -SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp -SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred -CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2442 37889999998631000134899999999999764
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.32 E-value=3.1e-06 Score=100.19 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=100.9
Q ss_pred ccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHH
Q 002424 638 FKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTL 717 (924)
Q Consensus 638 ~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll 717 (924)
.|++++|...++++.+..+.... .+. .+ +..+...|++++|...+++++.+.+ . ...++..+|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~--~~~---~l-g~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV--AWL---ML-ADAELGMGDTTAGEMAVQRGLALHP-------G-HPEAVARLGRVR 67 (568)
T ss_dssp -------------------CCHH--HHH---HH-HHHHHHHTCHHHHHHHHHHHHTTST-------T-CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHH--HHH---HH-HHHHHHcCCHHHHHHHHHHHHHhCC-------C-CHHHHHHHHHHH
Confidence 47888999988888876553211 111 11 1566788999999999999888522 1 357788899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.+.-. ...++..+|.++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~ 135 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAP------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWR 135 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHH
Confidence 999999999999998887522 22668888999999999999999999888877431 135677888888
Q ss_pred HHc---CCChHHHHHHHHHHHHhHHH
Q 002424 798 LSF---GPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 798 ~~l---G~~~~~~Al~lLe~aLp~vl 820 (924)
..+ |+. ++|...+++++..--
T Consensus 136 ~~~~~~g~~--~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 136 RRLCDWRAL--DVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHTTCCTTH--HHHHHHHHHHHHHTC
T ss_pred HHhhccccH--HHHHHHHHHHHhcCC
Confidence 888 776 889999988876643
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.30 E-value=7.8e-06 Score=74.66 Aligned_cols=131 Identities=18% Similarity=0.138 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
++.+.++.++...|++++|+..+++++.... ....++..+|.++...|+++.|+..+.+++..... ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence 4577889999999999999999999887421 23567888999999999999999999998876421 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
.+...+|.++...|+. ++|+.++++++..... ...++..+|.++.. .|++++|+.++++++..
T Consensus 70 ~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDY--DEAIEYYQKALELDPR------SAEAWYNLGNAYYK------QGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHCTT------CHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCCC------ChHHHHHHHHHHHH------HccHHHHHHHHHHHHcc
Confidence 5667899999999998 9999999999865321 24577889999998 89999999999998764
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.26 E-value=1e-05 Score=77.64 Aligned_cols=142 Identities=10% Similarity=-0.005 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL 784 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~ 784 (924)
..+..+..+|..+...|++++|+..+++++.... ....++..+|.++...|++..|+..+.+++.+...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 3678889999999999999999999999988532 23678899999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
...+...+|.++..+|+. ++|+..+++++...- .+ ..+.....++..+.. .|++++|+..++++...
T Consensus 80 -~~~~~~~~a~~~~~~~~~--~~A~~~~~~a~~~~p--~~--~~~~~~~~~~~~~~~------~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 -YIKGYYRRAASNMALGKF--RAALRDYETVVKVKP--HD--KDAKMKYQECNKIVK------QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp -CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHST--TC--HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCC--CC--HHHHHHHHHHHHHHH------HHHHHHHHHcccchHHH
Confidence 246788899999999998 999999999986532 22 233344555555776 78899999999998888
Q ss_pred HHhhcC
Q 002424 865 LQVLED 870 (924)
Q Consensus 865 f~~l~~ 870 (924)
+..+..
T Consensus 147 ~~~~~~ 152 (166)
T 1a17_A 147 VDSLDI 152 (166)
T ss_dssp HHHCCC
T ss_pred hcccch
Confidence 876554
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.25 E-value=2e-05 Score=80.81 Aligned_cols=181 Identities=13% Similarity=0.040 Sum_probs=136.7
Q ss_pred HHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-
Q 002424 683 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG- 761 (924)
Q Consensus 683 ~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G- 761 (924)
+|..+++++... + .+.+.+.+|.++...|++++|++++++++.. +...++..+|.++.. |
T Consensus 4 eA~~~~~~aa~~----g------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------g~~~a~~~lg~~y~~-~g 64 (212)
T 3rjv_A 4 EPGSQYQQQAEA----G------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------GDGDALALLAQLKIR-NP 64 (212)
T ss_dssp CTTHHHHHHHHT----T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHTTS-ST
T ss_pred hHHHHHHHHHHC----C------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc-CC
Confidence 466677777652 2 3678999999999999999999999998762 346889999999998 7
Q ss_pred ---ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHH
Q 002424 762 ---NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIA 834 (924)
Q Consensus 762 ---~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~ 834 (924)
++.+|+.++.+|+.. + .+.+...||.++.. .++. ++|+..+++++. .|+....+.+++.
T Consensus 65 ~~~~~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~--~~A~~~~~~A~~----~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 65 QQADYPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDV--AHAITLLQDAAR----DSESDAAVDAQML 130 (212)
T ss_dssp TSCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCH--HHHHHHHHHHTS----STTSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCH--HHHHHHHHHHHH----cCCCcchHHHHHH
Confidence 899999999998542 3 34678889999876 5565 999999999865 3443345778999
Q ss_pred HHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHHH
Q 002424 835 EAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKL-G-----RLAEREEAAALFKEYV 905 (924)
Q Consensus 835 LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~l-G-----d~~~r~~aa~~f~~l~ 905 (924)
||.++.... +..+++.+|+.++++|.+. -+++ .+++.+|.+|... | +.+++..+.....+.|
T Consensus 131 Lg~~y~~g~--g~~~d~~~A~~~~~~A~~~---~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 131 LGLIYASGV--HGPEDDVKASEYFKGSSSL---SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTS--SSSCCHHHHHHHHHHHHHT---SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--CCCCCHHHHHHHHHHHHHc---CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999998732 2357899999999999764 1232 3688999999764 4 6777666555544443
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.24 E-value=5.7e-06 Score=83.62 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=108.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...++++.. + ...+...+|.++...|++++|++.+++++... .....++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~---------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~ 76 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQD---------P--HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQ 76 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSSS---------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHcC---------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHH
Confidence 567789999999999987732 1 35789999999999999999999999998852 223678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLN----------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g----------~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+|.++...|+++.|+..+.+++.+..... .....+.++..+|.++..+|+. ++|+..++.++...-
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW--KKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH--HHHHHHHHHHHHcCc
Confidence 99999999999999999999999765544 4445567889999999999998 999999999987644
No 115
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=8.4e-06 Score=76.53 Aligned_cols=106 Identities=8% Similarity=-0.020 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CC
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 824 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd 824 (924)
.+.++..+|.++.+.|++++|+.++.+|+.+.- ..+.++..+|.++..+|+. ++|+..++.++.+-... .+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------~~~~~~~nlg~~~~~~~~~--~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP------SNITFYNNKAAVYFEEKKF--AECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHHHhhhH--HHHHHHHHHHHHhCcccchh
Confidence 366788999999999999999999999998742 2356788999999999998 99999999999987665 56
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
....|.++..+|.++.+ .|++.+|+.++++|+...
T Consensus 79 ~~~~a~~~~~lg~~~~~------~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQK------QNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHhhC
Confidence 77889999999999999 899999999999998754
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.21 E-value=3.7e-06 Score=83.20 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=118.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++++|...+++++.+.+ . ...++..+|.++...|++++|+..+++++... +. ......
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p~--~~~~~~ 78 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQ-------S-RGDVKLAKADCLLETKQFELAQELLATIPLEY-----QD--NSYKSL 78 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHH-------T-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----CC--HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-------C-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----CC--hHHHHH
Confidence 567889999999999999988643 1 46889999999999999999999999886531 11 122333
Q ss_pred HHHHHH-hcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHH
Q 002424 753 LAEIHK-KSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARA 831 (924)
Q Consensus 753 la~i~~-~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a 831 (924)
++.+.. ..+....|+..+.+++.+.- ....++..+|.++...|+. ++|+..+++++..--.. ....+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P------~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~----~~~~a 146 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANP------DNFELACELAVQYNQVGRD--EEALELLWNILKVNLGA----QDGEV 146 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTCTTT----TTTHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcccH--HHHHHHHHHHHHhCccc----ChHHH
Confidence 343322 22333457888888876532 1246778899999999998 99999999987652222 23457
Q ss_pred HHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 832 FIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 832 ~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
+..+|.++.. .|+.++|+..+++++..
T Consensus 147 ~~~l~~~~~~------~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 147 KKTFMDILSA------LGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHH------HCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------hCCCCcHHHHHHHHHHH
Confidence 7889999998 89999999999998753
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.21 E-value=1.7e-06 Score=83.81 Aligned_cols=147 Identities=10% Similarity=0.016 Sum_probs=111.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHH
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATL 791 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~ 791 (924)
.+|.++..+|++++|++.++.++. .......+...+|.+|...|+++.|+..+.+++.+.-. .+.++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~------~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER------DPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHH
Confidence 356677788999999999888764 23444667788999999999999999999999987422 256788
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHH-HHHHHHHHHHhhcC
Q 002424 792 TLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLD-PLRQASEELQVLED 870 (924)
Q Consensus 792 ~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~-~L~~A~~~f~~l~~ 870 (924)
.+|.++..+|+. ++|+..+++++..-- ....+++.+|.++.. .|+..+|.. ++++|++..-
T Consensus 70 ~lg~~~~~~~~~--~~A~~~~~~al~~~p------~~~~~~~~la~~~~~------~~~~~~aa~~~~~~al~l~P---- 131 (150)
T 4ga2_A 70 FLGLLYELEENT--DKAVECYRRSVELNP------TQKDLVLKIAELLCK------NDVTDGRAKYWVERAAKLFP---- 131 (150)
T ss_dssp HHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------HCSSSSHHHHHHHHHHHHST----
T ss_pred HHHHHHHHcCch--HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH------cCChHHHHHHHHHHHHHhCc----
Confidence 899999999998 999999999986522 124578899999998 788776554 5789987642
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 002424 871 HELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 871 ~~~~~~vl~~lA~l~~~lGd 890 (924)
.-..++..++.++...|+
T Consensus 132 --~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 132 --GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --TCHHHHHHHHHHHHTCCC
T ss_pred --CCHHHHHHHHHHHHHhCc
Confidence 234577788888888775
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.20 E-value=3.5e-06 Score=90.66 Aligned_cols=193 Identities=10% Similarity=-0.060 Sum_probs=150.4
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHccc-c-----
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRH-------ARTLLAANQFSEAAAVAHSLFCMCYKFNL-Q----- 743 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~-------a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-~----- 743 (924)
..+++.+|.+.|.++..+ ||. ...+++.+ +.++.+.+++.+++..+...+.+....-. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~-------dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g 89 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY-------DES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG 89 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH-------CTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred cCCCHHHHHHHHHHHHHh-------Chh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence 689999999999999997 333 56778878 89999999999999988887763322110 0
Q ss_pred ---------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 002424 744 ---------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQ 814 (924)
Q Consensus 744 ---------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~ 814 (924)
...-++.+..|.++...|+++.|...+.+.+. +.+... +...+|.++...|+. ++|+.+++.
T Consensus 90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~--~~~~~a~l~~~~~r~--~dA~~~l~~ 160 (282)
T 4f3v_A 90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHL--VAWMKAVVYGAAERW--TDVIDQVKS 160 (282)
T ss_dssp TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHH--HHHHHHHHHHHTTCH--HHHHHHHTT
T ss_pred cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchH--HHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 12356788899999999999999999876654 223333 677899999999998 999999985
Q ss_pred HHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhcCCHHH
Q 002424 815 ALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLED-HELAAEAFYLIAIVFDKLGRLAE 893 (924)
Q Consensus 815 aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~-~~~~~~vl~~lA~l~~~lGd~~~ 893 (924)
+. ...+....+.+++.||.++.. .|++++|+.+|++|.. -.. |....++.+.+|.++..+|+.++
T Consensus 161 a~----~~~d~~~~~~a~~~LG~al~~------LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 161 AG----KWPDKFLAGAAGVAHGVAAAN------LALFTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp GG----GCSCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred hh----ccCCcccHHHHHHHHHHHHHH------CCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 53 334666778899999999999 9999999999999973 122 44477899999999999999988
Q ss_pred HHHHHHH
Q 002424 894 REEAAAL 900 (924)
Q Consensus 894 r~~aa~~ 900 (924)
+......
T Consensus 227 A~~~l~~ 233 (282)
T 4f3v_A 227 AVALLEW 233 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.18 E-value=1.1e-05 Score=75.68 Aligned_cols=117 Identities=11% Similarity=0.006 Sum_probs=95.5
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
||. .+++...+|..+...|+|++|++.+++++... .....++..+|.++...|++..|+..+.+|+.+-..
T Consensus 9 nP~-~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 79 (126)
T 4gco_A 9 NPE-LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-- 79 (126)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--
Confidence 665 67889999999999999999999999998852 233678999999999999999999999999987321
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhh
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 839 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~ 839 (924)
...++..+|.++..+|+. ++|+..+++++..- -++ ..++..|++|.
T Consensus 80 ----~~~a~~~lg~~~~~~~~~--~~A~~~~~~al~l~--P~~----~~a~~~l~~~l 125 (126)
T 4gco_A 80 ----FIKGYIRKAACLVAMREW--SKAQRAYEDALQVD--PSN----EEAREGVRNCL 125 (126)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC--TTC----HHHHHHHHHHC
T ss_pred ----hhHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHC--cCC----HHHHHHHHHhc
Confidence 246788999999999998 99999999998752 222 23556666654
No 120
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.17 E-value=5.8e-05 Score=69.68 Aligned_cols=119 Identities=11% Similarity=-0.039 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+..+.++|..+...|+|++|...++++.+..|... ..+. .++ ..++..|++++|...+++++.+.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~---~~a-~~~~~~~~~~~A~~~~~~al~~~p------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYS---NRA-AALAKLMSFPEAIADCNKAIEKDP------- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHH---HHH-HHHHHhcCHHHHHHHHHHHHHhCC-------
Confidence 345667777777777777777777777776654321 1111 111 455677777777777777776522
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 756 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i 756 (924)
. ...+++.+|.++...|++++|++.+++++......++......++..++.+
T Consensus 70 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 N-FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 1 245677777777777777777777777777654433333334444444433
No 121
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.17 E-value=4.2e-05 Score=88.14 Aligned_cols=209 Identities=16% Similarity=0.089 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC---CHHHHHHHHHHHhhhhhccCCCC
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG---HLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G---~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
.+..+||..+...|+++++....+................+. ..+...| ++.+|...++++... ++.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg-----~~~~~~g~~~~~~~A~~~~~~aa~~----g~~- 211 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELA-----TVYQKKQQPEQQAELLKQMEAGVSR----GTV- 211 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHT----TCS-
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHH-----HHHHHcCCcccHHHHHHHHHHHHHC----CCH-
Confidence 567888999988887777766644433332221122112222 4556699 999999999999874 211
Q ss_pred cchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH-H--HhcCChhhhHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAA----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI-H--KKSGNAVLGIPYALASLS 775 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~----G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i-~--~~~G~~~~Al~~l~~AL~ 775 (924)
.+...++++.++... +++++|+++++++. .+...++..+|.+ + ...|++.+|+.++.+|+.
T Consensus 212 ---~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 212 ---TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345568888888555 79999999999874 3446788889998 5 679999999999998874
Q ss_pred HHHHhCCcHHHHHHHHHHHHHHHHcC-----CChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 002424 776 FCQLLNLDLLKASATLTLAELWLSFG-----PNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN 850 (924)
Q Consensus 776 la~~~g~~~~~A~al~~La~l~~~lG-----~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~ 850 (924)
. | .+.+...||.++. .| +. ++|+..++++. .|+ +.+++.||.++... .+...+
T Consensus 280 ~----g----~~~A~~~Lg~~y~-~G~g~~~d~--~~A~~~~~~Aa-----~g~----~~A~~~Lg~~y~~G--~g~~~d 337 (452)
T 3e4b_A 280 A----D----QPRAELLLGKLYY-EGKWVPADA--KAAEAHFEKAV-----GRE----VAADYYLGQIYRRG--YLGKVY 337 (452)
T ss_dssp T----T----CHHHHHHHHHHHH-HCSSSCCCH--HHHHHHHHTTT-----TTC----HHHHHHHHHHHHTT--TTSSCC
T ss_pred C----C----CHHHHHHHHHHHH-cCCCCCCCH--HHHHHHHHHHh-----CCC----HHHHHHHHHHHHCC--CCCCcC
Confidence 3 3 3567888999987 67 54 99999999997 444 46888999999873 223568
Q ss_pred hHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 002424 851 PEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFD 886 (924)
Q Consensus 851 ~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~ 886 (924)
+.+|+.++++|.+ .++ .++.+.+|.+|.
T Consensus 338 ~~~A~~~~~~Aa~----~g~----~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 338 PQKALDHLLTAAR----NGQ----NSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHHHHHHHT----TTC----TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hCh----HHHHHHHHHHHH
Confidence 9999999999875 222 345556666665
No 122
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.9e-05 Score=72.99 Aligned_cols=120 Identities=11% Similarity=-0.092 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.++.+..+|..+...|+|++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------ 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------
Confidence 567889999999999999999999999988532 23678999999999999999999999999987422
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhh
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCL 839 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~ 839 (924)
...++..+|.++..+|+. ++|+..+++++...-..++......+...+++|.
T Consensus 71 ~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEY--ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 256788899999999998 9999999999988755444334444555555544
No 123
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=0.0001 Score=72.26 Aligned_cols=115 Identities=16% Similarity=-0.015 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc-----hH-HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-----SR-ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-----~~-~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~ 697 (924)
.+..+.++|..+...|+|++|+..++.|++.-|...+ .. .........+..+...|+|++|...+++++.+|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4566789999999999999999999999998886321 11 11112122226778999999999999999998554
Q ss_pred cCCCCcchHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEAS----LRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 698 ~~~~D~~~~a~a~----~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
.+..||. ...++ +++|.++..+|++++|+..+++++++..+
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4444543 56777 99999999999999999999999997664
No 124
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=3.9e-05 Score=75.27 Aligned_cols=114 Identities=17% Similarity=0.035 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc------cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN------LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g------d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
.+......|..+...|+|++|++.+++++++..... .....+.++.++|.++...|++++|+..+.+||.+..+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 567789999999999999999999999999866421 11123559999999999999999999999999998422
Q ss_pred -hCCcHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 780 -LNLDLLKASAT----LTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 780 -~g~~~~~A~al----~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
.-...-.+.++ .++|.++..+|+. ++|+..+++++.+.-+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~--eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRG--AEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCH--HHHHHHHHHHHhcCCC
Confidence 22233445666 8999999999998 9999999999988643
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.07 E-value=5.9e-05 Score=70.67 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+.+.++.++|..+..+|+|++|+..++++.+.-|... ..+. .++ ..++..|++.+|...+++++.+ |
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~---~~~-~~~~~~~~~~~A~~~~~~al~~-------~ 77 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYS---NRA-ACLTKLMEFQRALDDCDTCIRL-------D 77 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH---HHh-hHHHhhccHHHHHHHHHHHHHh-------h
Confidence 4577888999999999999999999999988765321 1111 111 5677899999999999999886 2
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
|. ...+++++|.++..+|++++|++.+++++++
T Consensus 78 p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 78 SK-FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh-hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22 3578889999999999999999999998875
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=5.6e-05 Score=83.47 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc---h------HH-HHHHHhhHHHHHHHcCCHHHHHHHHHHHh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---S------RI-LLLKLQLLHERSLHRGHLKLAQKVCDELG 692 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~---~------~~-~~l~l~l~~~~al~~G~~~~A~~~l~~ll 692 (924)
..+.++.++|..+...|+|++|...++++....+.... . .. ..+..+++ ..++..|+|.+|...+++++
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA-MCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999998876531 0 01 11112222 68889999999999999999
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhh-HHHHH
Q 002424 693 VMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLG-IPYAL 771 (924)
Q Consensus 693 ~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~A-l~~l~ 771 (924)
.+.+ . ...+++++|.++...|++++|+..+++++.+.. ....++..++.++...|++.+| ...+.
T Consensus 224 ~~~p-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 224 ELDS-------N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP------NNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC-------C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9732 2 467899999999999999999999999988522 2256888999999999999888 44444
Q ss_pred HHHH
Q 002424 772 ASLS 775 (924)
Q Consensus 772 ~AL~ 775 (924)
+.+.
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 127
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.05 E-value=8.3e-05 Score=87.01 Aligned_cols=206 Identities=9% Similarity=-0.033 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-HhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHH
Q 002424 626 LAHVKLIQHLAV-------FKGYK-------EAFSALKIAEE-KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDE 690 (924)
Q Consensus 626 ~a~~~La~~~a~-------~G~y~-------eA~~~L~~a~~-~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ 690 (924)
.+..++|..+.. .|+++ +|...+++|.+ ..|. ...+|.... ......|++++|..++++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~--~~~l~~~~~----~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK--NMLLYFAYA----DYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS--CHHHHHHHH----HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc--cHHHHHHHH----HHHHhcCCHHHHHHHHHH
Confidence 556777777765 79987 89999998886 4442 222333221 455678999999999999
Q ss_pred HhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH-HHhcCChhhhHHH
Q 002424 691 LGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI-HKKSGNAVLGIPY 769 (924)
Q Consensus 691 ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i-~~~~G~~~~Al~~ 769 (924)
++.+. +.+ ...++...+.++.+.|++++|.+.+++++.... ....+....+.+ +...|++++|+..
T Consensus 347 al~~~----p~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~------~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 347 LLAIE----DID---PTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------TRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp HHHSS----SSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT------CCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HhCcc----ccC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC------CchHHHHHHHHHHHHHcCChhHHHHH
Confidence 98852 122 345888899999999999999999999986322 112333344444 3468999999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
+.+++...- . ...+...++.+....|+. ++|+.++++++...- .++......+....+.... .|
T Consensus 414 ~e~al~~~p---~---~~~~~~~~~~~~~~~g~~--~~Ar~~~~~al~~~~--~~~~~~~~lw~~~~~~e~~------~G 477 (530)
T 2ooe_A 414 FELGLKKYG---D---IPEYVLAYIDYLSHLNED--NNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESN------IG 477 (530)
T ss_dssp HHHHHHHHT---T---CHHHHHHHHHHHTTTTCH--HHHHHHHHHHHHSCC--SCGGGCHHHHHHHHHHHHH------SS
T ss_pred HHHHHHHCC---C---CHHHHHHHHHHHHhCCCH--hhHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH------cC
Confidence 999998752 1 135667889888889998 999999999975411 1222334455555555555 68
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002424 850 NPEAVLDPLRQASEELQ 866 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~ 866 (924)
+.+.+..+.++|.+.+-
T Consensus 478 ~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 89999999999988885
No 128
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=2.9e-05 Score=75.41 Aligned_cols=108 Identities=12% Similarity=0.009 Sum_probs=92.0
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc------------chhHHHHHHHHHHHHHhcCChhhhHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL------------QVENASVLLLLAEIHKKSGNAVLGIPYA 770 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd------------~~~~a~al~~la~i~~~~G~~~~Al~~l 770 (924)
....+..+...|..+...|+|++|+..+++++..+..... ......++..+|.++...|++..|+..+
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3447888999999999999999999999999997654322 3445779999999999999999999999
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 771 LASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 771 ~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.+|+.+.- ..+.++..+|.++..+|+. ++|+..+++++..
T Consensus 87 ~~al~~~p------~~~~a~~~~g~~~~~~g~~--~~A~~~~~~al~l 126 (162)
T 3rkv_A 87 SEVLKREE------TNEKALFRRAKARIAAWKL--DEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHST------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHhcCC------cchHHHHHHHHHHHHHhcH--HHHHHHHHHHHhc
Confidence 99998832 2357888999999999998 9999999999877
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.03 E-value=9.4e-05 Score=72.02 Aligned_cols=101 Identities=7% Similarity=-0.098 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++.++|..+...|+|++|...++++...-|.. ...|. .++ ..+...|+|++|...+++++.+.+ .
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~---~lg-~~~~~~g~~~~Ai~~~~~al~l~P----~- 102 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIM---GLA-AIYQIKEQFQQAADLYAVAFALGK----N- 102 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHSS----S-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH---HHH-HHHHHHccHHHHHHHHHHHHhhCC----C-
Confidence 456788999999999999999999999999876632 22222 111 577889999999999999998733 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMC 737 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~ 737 (924)
...+++++|.++...|++++|++.+++++...
T Consensus 103 ---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 103 ---DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 24678899999999999999999999998864
No 130
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.00 E-value=6.8e-05 Score=72.72 Aligned_cols=105 Identities=24% Similarity=0.192 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc------------hH-HHHHHHhhHHHHHHHcCCHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK------------SR-ILLLKLQLLHERSLHRGHLKLAQKVCD 689 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~------------~~-~~~l~l~l~~~~al~~G~~~~A~~~l~ 689 (924)
..+..+..+|..+...|+|++|+..++.+...++.... .. ...+..+++ ..++..|+|.+|...+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS-QCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHH-HHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHhcCcHHHHHHHHH
Confidence 35678899999999999999999999999988553211 00 011111222 56677888888888888
Q ss_pred HHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 690 ELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 690 ~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
+++.+ ||. ...+++++|.++...|++++|+..+++++.+
T Consensus 88 ~al~~-------~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 88 EVLKR-------EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHH-------STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhc-------CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 87775 222 3567778888888888888888888877774
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.00 E-value=6.9e-05 Score=72.98 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=94.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
||. ...+++.+|..+...|+|++|++.+++++... .....++..+|.++...|++++|+..+.+|+.+.-.
T Consensus 32 ~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-- 102 (151)
T 3gyz_A 32 PDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-- 102 (151)
T ss_dssp CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--
T ss_pred CHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--
Confidence 443 67889999999999999999999999998742 234678999999999999999999999999988532
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
...++..+|.++..+|+. ++|+..+++++... ++...+.++-.
T Consensus 103 ----~~~~~~~lg~~~~~lg~~--~eA~~~~~~al~l~---~~~~~~~~A~~ 145 (151)
T 3gyz_A 103 ----DYTPVFHTGQCQLRLKAP--LKAKECFELVIQHS---NDEKLKIKAQS 145 (151)
T ss_dssp ----CCHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred ----CcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 235788999999999998 99999999998874 44444444433
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.98 E-value=1.8e-05 Score=76.34 Aligned_cols=113 Identities=18% Similarity=0.090 Sum_probs=92.3
Q ss_pred HHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhh
Q 002424 686 KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVL 765 (924)
Q Consensus 686 ~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~ 765 (924)
..+++++.+ +|. ...+.+.+|..+...|+|++|+..+++++... .....++..+|.++...|+++.
T Consensus 8 ~~~~~al~~-------~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 8 GTIAMLNEI-------SSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD------HYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp CSHHHHTTC-------CHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHcC-------CHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHHhhHHH
Confidence 445556554 332 57888999999999999999999999998742 2236778899999999999999
Q ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 766 GIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 766 Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
|+..+.+++.+.-. ...++..+|.++..+|+. ++|+..++.++...-
T Consensus 74 A~~~~~~al~l~p~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 74 AIHSYSYGAVMDIX------EPRFPFHAAECLLQXGEL--AEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCC------CchHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCc
Confidence 99999999987532 235678899999999998 999999999987754
No 133
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=9.5e-05 Score=67.31 Aligned_cols=105 Identities=10% Similarity=-0.051 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CCcH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-NLDL 784 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~~~ 784 (924)
.+.+...+|.++...|++++|+..+++++.... ....++..+|.++...|++..|+..+.+++.+.... ....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDP------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 467889999999999999999999999987532 236788999999999999999999999999998764 3444
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 785 LKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 785 ~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
....+...+|.++..+|+. ++|+..+++++..
T Consensus 77 ~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKY--KDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHh
Confidence 4478899999999999998 9999999999874
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.97 E-value=9.4e-05 Score=71.85 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=94.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
+....+.++..+|.++...|+|++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-- 77 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-- 77 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Confidence 3445788999999999999999999999999998532 23678999999999999999999999999988532
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
...++..+|.++..+|+. ++|+..+++++...-...+
T Consensus 78 ----~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 78 ----YSKAWSRLGLARFDMADY--KGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHSSSCC
T ss_pred ----CHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCchH
Confidence 257788999999999998 9999999999988766665
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.96 E-value=0.00015 Score=65.82 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++.+....+.. ...+. .++ ..+...|++.+|...+.++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~~a-~~~~~~~~~~~A~~~~~~~~~~~~---- 77 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFC---NRA-AAYSKLGNYAGAVQDCERAICIDP---- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHH---HHH-HHHHHhhchHHHHHHHHHHHhcCc----
Confidence 34556788899999999999999999999988875532 11111 111 567789999999999999988522
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA 763 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~ 763 (924)
+ ...+...+|.++...|++++|+..+++++.... ....++..+|.++...|++
T Consensus 78 -~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 -A---YSKAYGRMGLALSSLNKHVEAVAYYKKALELDP------DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTTC
T ss_pred -c---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHHhcC
Confidence 1 256788999999999999999999998887522 1245677888888887765
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.93 E-value=5.3e-05 Score=83.69 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.++..+|.++...|+|++|+..+++++.......+.. ...+ .. ....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------------~~~~-------~~------~~~~ 194 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------------------NEEA-------QK------AQAL 194 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------------------SHHH-------HH------HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC------------------hHHH-------HH------HHHH
Confidence 777888888888888888888888888877644332210 0000 01 1123
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.+.++.++|.++..+|+. ++|+..+++++..-- ..+.+++.+|.++.. .|++++|+.++++|++..
T Consensus 195 ~~~~~~nla~~~~~~g~~--~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~------~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAF--SAAIESCNKALELDS------NNEKGLSRRGEAHLA------VNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCC------CcHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHC
Confidence 456778899999999998 999999999987632 235789999999999 899999999999999874
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHhhhccCCC
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE--AAALFKEYVLALENENRQ 914 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~--aa~~f~~l~~~~~~~~~~ 914 (924)
- .-..++..++.++..+|+..+++. +...|..+......+.+.
T Consensus 261 P------~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 305 (336)
T 1p5q_A 261 P------NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAE 305 (336)
T ss_dssp S------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 2 124688899999999999888644 666777766655444433
No 137
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=0.00017 Score=82.56 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=102.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cc-cchhHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVL 750 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~g-d~~~~a~al 750 (924)
..+...|+|++|..++++++.+...+-+.+-...+.++.+++.++..+|+|++|+.++++++..... .| +....+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 4566899999999999999987654433333347889999999999999999999999999998876 33 445668899
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHHHHHc
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLSFCQLL-NL-DLLKASATLTLAELWLSF 800 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~-~~~~A~al~~La~l~~~l 800 (924)
..+|.+|...|++++|+.++.+|+++-... |. ....+.++..|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998544 43 345556666676665543
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.92 E-value=7.6e-05 Score=74.95 Aligned_cols=130 Identities=12% Similarity=-0.040 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH----------HH-HHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR----------IL-LLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~----------~~-~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
..+..+.++|..+...|+|++|...++++....+...+.. +. .+...++ ..++..|+|.+|...+.++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA-TCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHH
Confidence 3567788999999999999999999999998877644210 00 1111222 6778999999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
+.+.+ . ...+++++|.++...|++++|++.+++++.... ....++..++.++...|+..++.
T Consensus 115 l~~~p-------~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 115 LKIDK-------N-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP------NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHST-------T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhCc-------c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 98622 1 357889999999999999999999999987522 22556777788887777776665
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=9.3e-05 Score=71.87 Aligned_cols=102 Identities=11% Similarity=-0.082 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++..+|..+...|+|++|+..++++.+..+... ..+. .++ ..++..|++++|...+++++.+.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~---~l~-~~~~~~g~~~~A~~~~~~al~~~p------ 76 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLS---NRA-AAYSASGQHEKAAEDAELATVVDP------ 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHH---HHH-HHHHHccCHHHHHHHHHHHHHhCC------
Confidence 5567888899999999999999999998888765321 1111 111 567788999999999998888622
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
. ...+++++|.++...|++++|++.+++++....
T Consensus 77 -~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 77 -K-YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp -T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred -C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 2 357788889999999999999999998888654
No 140
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.91 E-value=0.0001 Score=67.09 Aligned_cols=106 Identities=9% Similarity=0.014 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CC
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GG 824 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd 824 (924)
.+.++..+|.++...|++..|+..+.+++.+... ...+...+|.++...|+. ++|+..+++++...... ++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDY--NKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhccccchh
Confidence 3667889999999999999999999999887421 246778899999999998 99999999999987764 55
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
....+.++..+|.++.. .|++.+|+.++++++...
T Consensus 75 ~~~~~~~~~~la~~~~~------~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFK------EEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH------hccHHHHHHHHHHHHHhC
Confidence 55668899999999999 899999999999999854
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.91 E-value=8.6e-05 Score=68.07 Aligned_cols=122 Identities=15% Similarity=0.016 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
......++..+|..+...|+|++|...++++.+..+.. ...+. .++ ..+...|++++|...++++..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~---~la-~~~~~~~~~~~A~~~~~~a~~~~~---- 81 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYS---NRA-ACYTKLLEFQLALKDCEECIQLEP---- 81 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHH---HHH-HHHTTTTCHHHHHHHHHHHHHHCT----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHH---HHH-HHHHHhccHHHHHHHHHHHHHhCC----
Confidence 34557788999999999999999999999988765532 11111 111 566789999999999999988632
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+ ...+...+|.++...|++++|++.+++++.... ....++..++.++...|+
T Consensus 82 -~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -T---FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG------GGTHHHHHHHHHHHHHTC
T ss_pred -C---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcC
Confidence 1 357788999999999999999999998887522 124466677777766553
No 142
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.88 E-value=0.0015 Score=82.92 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=153.8
Q ss_pred HHHHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhh
Q 002424 591 RATAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQL 670 (924)
Q Consensus 591 ~a~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l 670 (924)
...+|..+|........-.-+..+|.+.. ....+.++|..+...|+|++|.+.|..|.+.-+...-.. .+.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKAd----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~La--- 1174 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELI--- 1174 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHH---
Confidence 36789999988888775555566665532 235667889999999999999999998886542211000 011
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHH
Q 002424 671 LHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVL 750 (924)
Q Consensus 671 ~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al 750 (924)
..+...+++.+...+. . ++ ........|..+...|+|++|...+..+ .-+
T Consensus 1175 --faYAKl~rleele~fI----~--------~~--n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------~ny 1224 (1630)
T 1xi4_A 1175 --FALAKTNRLAELEEFI----N--------GP--NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNF 1224 (1630)
T ss_pred --HHHHhhcCHHHHHHHH----h--------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------------hHH
Confidence 2222336665433332 1 00 1123445777777777777777777654 234
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHH------------------HHHHhCCcH-HHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 751 LLLAEIHKKSGNAVLGIPYALASLS------------------FCQLLNLDL-LKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 751 ~~la~i~~~~G~~~~Al~~l~~AL~------------------la~~~g~~~-~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
..+|.++.+.|+++.|++.+.+|.. +|+..|... ..+.-+-.++..+...|.. ++|+.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f--eEAI~L 1302 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF--EELITM 1302 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH--HHHHHH
Confidence 4456666666666666666654422 222222210 1223344677788888886 999999
Q ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHH
Q 002424 812 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE-----LAAEAFYLIAIVFD 886 (924)
Q Consensus 812 Le~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~-----~~~~vl~~lA~l~~ 886 (924)
++.+|..=+.| .-.+..||.++..- + .+...+++.+ .+.+++-+. .+++..-.+..+|+
T Consensus 1303 lE~aL~LeraH------~gmftELaiLyaKy---~-peklmEhlk~------f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A 1303 LEAALGLERAH------MGMFTELAILYSKF---K-PQKMREHLEL------FWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred HHHHhccChhH------hHHHHHHHHHHHhC---C-HHHHHHHHHH------HHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence 99887653332 22444556555441 1 1222223222 334555455 67777889999999
Q ss_pred hcCCHHHHH-------HHHHHHHHHHHhh
Q 002424 887 KLGRLAERE-------EAAALFKEYVLAL 908 (924)
Q Consensus 887 ~lGd~~~r~-------~aa~~f~~l~~~~ 908 (924)
.-|+.+.|- +-|+...++..-+
T Consensus 1367 ~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1367 KYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred hcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 999999877 4555555554433
No 143
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.86 E-value=0.00052 Score=86.97 Aligned_cols=207 Identities=14% Similarity=0.076 Sum_probs=116.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHH
Q 002424 631 LIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEAS 710 (924)
Q Consensus 631 La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~ 710 (924)
+|..+...|.|+||..+++.+... . . +.+ ......|+|++|.+++++.. ...++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-~-------~--A~~---VLie~i~nldrAiE~Aervn-------------~p~vW 1108 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-T-------S--AVQ---VLIEHIGNLDRAYEFAERCN-------------EPAVW 1108 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-H-------H--HHH---HHHHHHhhHHHHHHHHHhcC-------------CHHHH
Confidence 477777889999999888865311 0 0 000 11115556666665555431 23556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcH------
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDL------ 784 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~------ 784 (924)
+.+|..+...|++.+|++.+.++ ++ ......+|.++.+.|+++.|+..+..|....+....+.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKA-------dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKA-------DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhc-------CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 66666666666666666666543 11 33444456666666666666666654432221100000
Q ss_pred ------HH---------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 785 ------LK---------ASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 785 ------~~---------A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
.+ ......+|..+...|.. ++|..++..+ ..|..+|+|+.. .|
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~eg~Y--eeA~~~Y~kA--------------~ny~rLA~tLvk------Lg 1235 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY--DAAKLLYNNV--------------SNFGRLASTLVH------LG 1235 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCH--HHHHHHHHhh--------------hHHHHHHHHHHH------hC
Confidence 00 01234577777777776 7787777774 477778888888 78
Q ss_pred ChHHHHHHHHHHHHHHH------------------hhc-CHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 850 NPEAVLDPLRQASEELQ------------------VLE-DHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~------------------~l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
++++|++..++|...-. ..+ ......+-+..++..|...|..+++-.
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888877743211 000 000122344466667777777777655
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.86 E-value=0.00044 Score=63.35 Aligned_cols=102 Identities=13% Similarity=0.021 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
++.++|..+...|+|++|...++.+....|.......... .+ +..++..|++++|...+++++...+ +....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~--~l-g~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALY--WL-GESYYATRNFQLAEAQFRDLVSRYP-----THDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHH--HH-HHHHHHTTCHHHHHHHHHHHHHHCT-----TSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHH--HH-HHHHHHhccHHHHHHHHHHHHHHCC-----CCccc
Confidence 4567888888999999999999988888775442111111 11 1567788999999999998888643 21124
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..+.+.+|.++...|++++|...+++++..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 678888999999999999999999888774
No 145
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.85 E-value=0.00012 Score=83.76 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=90.0
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cc-cchhHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FN-LQVENASVLL 751 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~g-d~~~~a~al~ 751 (924)
.....|+|++|..++++++.+...+-+.+-...+.++.+++.++..+|+|++|..++++++++..+ .| +....+..++
T Consensus 307 ~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 307 RAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 445679999999999999998765433333347889999999999999999999999999998776 34 3456688999
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
++|.+|...|++++|...+.+|+++...
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.84 E-value=0.00027 Score=63.43 Aligned_cols=118 Identities=17% Similarity=0.075 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
...++..+|..+...|+|++|...++++....+.. ...+. .++ ..+...|++++|...++++..+.+ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~la-~~~~~~~~~~~A~~~~~~~~~~~~----~-- 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWY---NLG-NAYYKQGDYDEAIEYYQKALELDP----N-- 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT----T--
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHH---HHH-HHHHHhCCHHHHHHHHHHHHHhCC----c--
Confidence 45778889999999999999999999988775522 11111 111 566788999999999999887522 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG 761 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G 761 (924)
...+...++.++...|++++|...+++++.... ....++..+|.++...|
T Consensus 76 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 --NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHC
T ss_pred --cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHhcc
Confidence 246778889999999999999999998877421 22445666666665543
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.83 E-value=0.00074 Score=63.92 Aligned_cols=102 Identities=13% Similarity=-0.055 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++.++|..+...|+|++|...++.+...-|.. ...|. .++ ..+...|++++|...+++++.+.+ .
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~---~lg-~~~~~~g~~~~A~~~~~~al~~~p----~- 84 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFL---GLG-ACRQSLGLYEQALQSYSYGALMDI----N- 84 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT----T-
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHH---HHH-HHHHHHhhHHHHHHHHHHHHhcCC----C-
Confidence 456778899999999999999999999998876532 22222 111 577899999999999999998733 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
...+.+.+|.++...|++++|++.++.++....
T Consensus 85 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 85 ---EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 246788999999999999999999999998765
No 148
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.80 E-value=0.0003 Score=80.51 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhc-cCchHHHHHH-HhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLS-VSKSRILLLK-LQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~-~~~~~~~~l~-l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...+....+..+|+|++|...+++++++... ++..+...+. ++.++..+..+|+|++|+.++++++.+...+-+.+-.
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344444566899999999999999987544 3444433332 3444478889999999999999999987665444444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cccc-hhHHHHHHHHHHHHHh
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-FNLQ-VENASVLLLLAEIHKK 759 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~-~~~a~al~~la~i~~~ 759 (924)
..+..++++|.++..+|++++|+.++++++++... .|.. ...+.++..+++++..
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999998775 4544 3456677777777654
No 149
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.78 E-value=0.0036 Score=70.40 Aligned_cols=210 Identities=13% Similarity=0.058 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHH-HcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSL-HRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al-~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+...||..+..+|++++-..++....+.|...+.++..- ++ ++. .... .-|..+.=.+++.....-+.. . .-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~-~l~-~~~~~~~~~~~~~~~~~~~~~~~a~~-~-~r~ 95 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVR-SLV-DMFLDMDAGTGIEVQLCKDCIEWAKQ-E-KRT 95 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHH-HHH-HHHTTSCCCHHHHHHHHHHHHHHHHH-T-TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHH-HHH-HHHhcCCCcHHHHHHHHHHHHHHHHH-H-HHH
Confidence 6789999999999999999999998888887777665322 22 111 1111 134444444555555443221 1 011
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh-CC
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL-NL 782 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~-g~ 782 (924)
..+.....+++.++...|+|.+|++.+.+++..|....|......+.....++|...|+..++...+.+|...+... ..
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 12233556899999999999999999999999999988888889999999999999999999999999999998876 78
Q ss_pred cHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHhHHHhhCCHHH-HHHHHHHHHHhhhc
Q 002424 783 DLLKASATLTLAELWL-SFGPNHAKMASNLIQQALPLILGHGGLEL-RARAFIAEAKCLLS 841 (924)
Q Consensus 783 ~~~~A~al~~La~l~~-~lG~~~~~~Al~lLe~aLp~vl~~gd~~~-~A~a~~~LAr~~la 841 (924)
+...+.....-|.++. ..++. ..|...+-++....-+.|+... ....|..|+.+...
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdy--k~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~ 234 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDF--KTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLG 234 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHhccCH--HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcC
Confidence 8899998887777776 67765 9999999999888877777543 33345555544443
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.76 E-value=0.00032 Score=67.46 Aligned_cols=102 Identities=18% Similarity=0.051 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
+...++.++|..+...|+|++|...++.+...-|.. ...|. .++ ..+...|++++|...+++++.+.+ .
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~---~lg-~~~~~~g~~~~A~~~~~~al~l~p----~- 87 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFL---GLG-ACRQAMGQYDLAIHSYSYGAVMDI----X- 87 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHST----T-
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHH---HHH-HHHHHHhhHHHHHHHHHHHHhcCC----C-
Confidence 446778889999999999999999999988775532 22221 111 567789999999999999988633 1
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
...+++.+|.++...|++++|++.+++++....
T Consensus 88 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 88 ---EPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 246788899999999999999999999988654
No 151
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.76 E-value=0.00022 Score=79.93 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-----------chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-----------KSRILLLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-----------~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
..+..+.++|..+...|+|++|+..++++.+..+... +.....+..+++ ..++..|+|++|...++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla-~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG-ACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHH-HHHHhccCHHHHHHHHHHH
Confidence 3456688999999999999999999999998655421 111111112222 6778899999999999999
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGI 767 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al 767 (924)
+.+. |. ...+++++|.++..+|++++|++.+++++.+.. ....++..++.++...|+..++.
T Consensus 300 l~~~-------p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P------~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 300 LEID-------PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP------EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTC-------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-------ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 8852 22 467889999999999999999999999887532 12445666777776666665543
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.75 E-value=8.6e-05 Score=74.57 Aligned_cols=143 Identities=14% Similarity=-0.004 Sum_probs=101.7
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch----------hH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV----------EN 746 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~----------~~ 746 (924)
..|++..|.+.+..... +....+..+...|..+...|+|++|++.+++++.......+.. ..
T Consensus 16 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDE--------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------CCCSGGGCCHH--------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHH--------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 45566666554442222 2233677889999999999999999999999998654332211 12
Q ss_pred HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHH
Q 002424 747 ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLE 826 (924)
Q Consensus 747 a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~ 826 (924)
..++..+|.++...|+++.|+..+.+++.+.. ....++..+|.++..+|+. ++|+..+++++..-- .+
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~~~~--~~A~~~~~~al~~~p--~~-- 155 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDK------NNVKALYKLGVANMYFGFL--EEAKENLYKAASLNP--NN-- 155 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHST--TC--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHCC--Cc--
Confidence 57899999999999999999999999998732 2256788899999999998 999999999986622 12
Q ss_pred HHHHHHHHHHHhhhc
Q 002424 827 LRARAFIAEAKCLLS 841 (924)
Q Consensus 827 ~~A~a~~~LAr~~la 841 (924)
..++..++.++..
T Consensus 156 --~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 156 --LDIRNSYELCVNK 168 (198)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 3455566666555
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.75 E-value=0.0003 Score=66.71 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+.+.+|..+...|++++|++.+++++... .....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------ 84 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------ 84 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------
Confidence 56788999999999999999999999998742 233678889999999999999999999999987432
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
...+...+|.++..+|+. ++|+..++.++...-.
T Consensus 85 ~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDL--DGAESGFYSARALAAA 118 (142)
T ss_dssp CTHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCC
Confidence 235678899999999998 9999999999887653
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.74 E-value=0.00076 Score=61.75 Aligned_cols=112 Identities=14% Similarity=-0.003 Sum_probs=86.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|.+|...+.+++...+ +......+.+.+|.++...|++++|+..+++++... .+......++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYP-----NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-----SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCC-----CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHHH
Confidence 577899999999999999988643 222345889999999999999999999999998742 222334678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~ 795 (924)
+|.++...|+++.|+..+.+++... ........++..|..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY---PGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHH
Confidence 9999999999999999999888764 233344444444443
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.73 E-value=0.0001 Score=72.25 Aligned_cols=124 Identities=13% Similarity=0.019 Sum_probs=98.1
Q ss_pred HHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 676 LHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 676 l~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
...|++++|...+++++...+ . ...++..+|.++...|++++|+..+++++..... ...++..+|.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-------~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-------Q-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-------S-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCC-------C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHH
Confidence 468999999999999988522 1 3578899999999999999999999999886432 2568889999
Q ss_pred H-HHhcCCh--hhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 756 I-HKKSGNA--VLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 756 i-~~~~G~~--~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
+ +...|++ +.|+..+.+++.+.-. ...++..+|.++...|+. ++|+..+++++...-.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSN------EITALMLLASDAFMQANY--AQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTCCT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcccH--HHHHHHHHHHHhhCCC
Confidence 9 8899999 9999999999887421 246778899999999998 9999999999876433
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.71 E-value=0.00021 Score=65.40 Aligned_cols=118 Identities=11% Similarity=-0.013 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCc
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
.....++..+|..+...|++++|++.+++++... .....++..+|.++...|++++|+..+.+++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----
Confidence 3478899999999999999999999999998631 223678999999999999999999999999987421
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 784 LLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 784 ~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
...+...+|.++..+|+. ++|+..+++++...-.. ..++..++.++..
T Consensus 83 --~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~ 130 (133)
T 2lni_A 83 --FIKGYTRKAAALEAMKDY--TKAMDVYQKALDLDSSC------KEAADGYQRCMMA 130 (133)
T ss_dssp --CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCGGG------THHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHhhH--HHHHHHHHHHHHhCCCc------hHHHHHHHHHHHH
Confidence 346788899999999998 99999999998763322 3456666666654
No 157
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.71 E-value=7.4e-05 Score=80.20 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
+.++..+|..+...|+|++|...++++....|... ..+. .++ ..++..|++++|...+++++.+.+ .
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~---~la-~~~~~~~~~~~A~~~~~~al~~~p-------~ 70 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYT---NRA-LCYLKMQQPEQALADCRRALELDG-------Q 70 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHH---HHH-HHHHHTTCHHHHHHHHHHHTTSCT-------T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHH---HHH-HHHHHhcCHHHHHHHHHHHHHhCC-------C
Confidence 46788999999999999999999999998866321 1111 111 677899999999999999988622 2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF 740 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~ 740 (924)
...+++++|.++...|++++|+..+++++......
T Consensus 71 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 71 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 35789999999999999999999999999876643
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.71 E-value=0.00038 Score=63.02 Aligned_cols=111 Identities=8% Similarity=0.017 Sum_probs=91.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++...+ + ...+...+|.++...|++++|++.+++++.... ....++..
T Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~ 85 (131)
T 2vyi_A 20 NEQMKVENFEAAVHFYGKAIELNP-----A---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------AYSKAYGR 85 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHcCC-----C---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc------cCHHHHHH
Confidence 677899999999999999988632 1 357889999999999999999999999987522 22668899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
+|.++...|+++.|+..+.+++.+... ...+...++.++..+|+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc------chHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887431 135667788888888764
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.69 E-value=0.00027 Score=63.50 Aligned_cols=119 Identities=20% Similarity=0.113 Sum_probs=91.2
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
||.....++..++.++...|++++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-- 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-- 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--
Confidence 4555678899999999999999999999999987522 23568889999999999999999999999876321
Q ss_pred CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhh
Q 002424 782 LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 840 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~l 840 (924)
...+...+|.++...|+. ++|...+++++...- .+ ..++..+|.++.
T Consensus 76 ----~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~ 122 (125)
T 1na0_A 76 ----NAEAWYNLGNAYYKQGDY--DEAIEYYQKALELDP--NN----AEAKQNLGNAKQ 122 (125)
T ss_dssp ----CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHCT--TC----HHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHH
Confidence 135677899999999998 999999999876521 12 234555555543
No 160
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.69 E-value=2.7e-05 Score=90.55 Aligned_cols=178 Identities=13% Similarity=-0.021 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+.++.++|..+..+|+|++|.+.+++|.+..|... ..+. .+ +..+...|++++|...+++++.+.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~---~l-g~~~~~~g~~~~A~~~~~~al~l~p------ 71 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYG---NR-SLAYLRTECYGYALGDATRAIELDK------ 71 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHSCT------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHH---HH-HHHHHHhcCHHHHHHHHHHHHHhCC------
Confidence 3455567778888899999999999999998865321 1111 11 1677899999999999999998622
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH--HHhcCChhhhHHHHH---------
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI--HKKSGNAVLGIPYAL--------- 771 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i--~~~~G~~~~Al~~l~--------- 771 (924)
. ...+++++|.++..+|++++|++.++++++... .... ++..++.+ +.+.|++++|+..+.
T Consensus 72 -~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p----~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 72 -K-YIKGYYRRAASNMALGKFRAALRDYETVVKVKP----HDKD--AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 143 (477)
T ss_dssp -T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCTT--HHHHHHHHHHHHHHHHHCCC------CCSTTTCC
T ss_pred -C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH--HHHHHHHHHHHHHHHHHHHHhccccccchhHhhh
Confidence 2 467899999999999999999999999988522 1222 34444444 888999999999988
Q ss_pred --HHHHHHHHhCCcH-----HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 772 --ASLSFCQLLNLDL-----LKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 772 --~AL~la~~~g~~~-----~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+++.+...+..+. .....+..+.+.+...+...-..+..++.++.....
T Consensus 144 ~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~ 199 (477)
T 1wao_1 144 DIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLS 199 (477)
T ss_dssp TTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHc
Confidence 5554433221111 111222234444444444434566667777666554
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.68 E-value=0.00013 Score=67.79 Aligned_cols=91 Identities=16% Similarity=-0.009 Sum_probs=76.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+.+ . ...+++.+|.++...|++++|+..+++++.... ....++..
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-------~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~ 90 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-------E-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIAVHAA 90 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHH
Confidence 567789999999999999998622 2 467899999999999999999999999988522 22568899
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+|.++...|++++|+..+.+++.+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988764
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.68 E-value=0.00041 Score=79.99 Aligned_cols=132 Identities=15% Similarity=0.030 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc---------hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK---------SRILLLKLQLLHERSLHRGHLKLAQKVCDELGV 693 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~---------~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~ 693 (924)
..+.++.++|..+..+|+|++|...+++|.+..+.... .......+......++..|+|.+|...+.+++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44678899999999999999999999999998776531 001111111122677889999999999999988
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHH
Q 002424 694 MASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIP 768 (924)
Q Consensus 694 l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~ 768 (924)
+.+ . ...+++++|.++..+|+|++|+..+++++.+. .....++..++.++...|++.+|..
T Consensus 346 ~~p-------~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 346 LDS-------A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HST-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-------c-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 632 2 36788999999999999999999999888642 2234577788888888888776643
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.67 E-value=0.00022 Score=66.17 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..+..+|..+...|+|++|+..+++++.... ....++..+|.++...|++..|+..+.+++.+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------ 75 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------ 75 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------
Confidence 467889999999999999999999999988532 23678999999999999999999999999987532
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILG 821 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~ 821 (924)
...++..+|.++..+|+. ++|+..+++++...-.
T Consensus 76 ~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESY--DEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHChh
Confidence 356788899999999998 9999999999987654
No 164
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.66 E-value=0.00068 Score=77.61 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=85.5
Q ss_pred HccCHHHHHHHHHHHHHHhhc-cCchHHHHH-HHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHH
Q 002424 637 VFKGYKEAFSALKIAEEKFLS-VSKSRILLL-KLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 714 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~-~~~~~~~~l-~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a 714 (924)
..|+|++|..++++++++... +++.+...+ .++.++..+..+|+|++|+.++++++.+...+-+.+-...+..++++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 468999999999999997654 455443332 244444788999999999999999999876654444444788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH-cccchh
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYK-FNLQVE 745 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~-~gd~~~ 745 (924)
.++..+|+|++|..++++++++... .|..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 9999999999999999999998765 454433
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.66 E-value=0.0002 Score=70.22 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=90.2
Q ss_pred HHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHH
Q 002424 636 AVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHAR 715 (924)
Q Consensus 636 a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ 715 (924)
...|+|++|...++.+.+..|.. ...+.. + +..++..|++++|...+++++.+.+ + ...+...+|.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~---l-g~~~~~~~~~~~A~~~~~~al~~~p-----~---~~~~~~~la~ 86 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQN--SEQWAL---L-GEYYLWQNDYSNSLLAYRQALQLRG-----E---NAELYAALAT 86 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSC--HHHHHH---H-HHHHHHTTCHHHHHHHHHHHHHHHC-----S---CHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCc--HHHHHH---H-HHHHHHcCCHHHHHHHHHHHHHcCC-----C---CHHHHHHHHH
Confidence 35688999999999888776532 122211 1 1577789999999999999988633 1 2567788888
Q ss_pred H-HHHcCCH--HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 716 T-LLAANQF--SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 716 l-l~~~G~~--~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
+ +...|++ ++|+..+++++.... ....++..+|.++...|+++.|+..+.+++.+.-.
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDS------NEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8 7789998 999999999887421 22567888999999999999999999998887543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.64 E-value=0.00059 Score=63.23 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
+..+..+|..+...|+|++|...++.+....|... ..+. .+ +..++..|++++|...+++++.+.+ .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~---~l-~~~~~~~~~~~~A~~~~~~al~~~p-------~ 75 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYT---NR-ALCYLKMQQPEQALADCRRALELDG-------Q 75 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH---HH-HHHHHHTTCHHHHHHHHHHHHHHCT-------T
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHH---HH-HHHHHHhcCHHHHHHHHHHHHHhCc-------h
Confidence 56778888888889999999999888887765321 1111 11 1566788889989888888887632 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK 739 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~ 739 (924)
...+++.+|.++...|++++|+..+++++.....
T Consensus 76 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 -SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3567888888888888888888888888876554
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.63 E-value=0.00022 Score=79.98 Aligned_cols=141 Identities=13% Similarity=0.063 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..+..+|..+...|+|++|++.+++++..+.... ..- ..-........
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~-------------~~~~~~~~~~~ 271 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAA-------------EDADGAKLQPV 271 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHS-------------CHHHHGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------ccc-------------ChHHHHHHHHH
Confidence 677777788888888888888888887777544321 000 00111224455
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
.+.++.++|.++..+|+. ++|+..+++++..- . ..+.+++.+|.++.. .|++++|+.++++|++..
T Consensus 272 ~~~~~~nla~~~~~~g~~--~~A~~~~~~al~~~----p--~~~~a~~~lg~~~~~------~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDW--QGAVDSCLEALEID----P--SNTKALYRRAQGWQG------LKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC----T--TCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCH--HHHHHHHHHHHHhC----c--hhHHHHHHHHHHHHH------ccCHHHHHHHHHHHHHhC
Confidence 667888999999999998 99999999998742 1 347789999999999 899999999999999874
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 002424 866 QVLEDHELAAEAFYLIAIVFDKLGRLAEREE 896 (924)
Q Consensus 866 ~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~ 896 (924)
-. -..+...++.++..+|+..++.+
T Consensus 338 P~------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 338 PE------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34577788888888887776554
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.62 E-value=0.00017 Score=66.94 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 708 EASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 708 ~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
...+.+|..+...|++++|+..+++++... .....++..+|.++...|+++.|+..+.+|+.+.-. ..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~ 85 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DI 85 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence 346789999999999999999999998842 223778899999999999999999999999988532 23
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 788 SATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 788 ~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.++..||.++..+|+. ++|+..+++++..
T Consensus 86 ~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNA--NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHh
Confidence 5778899999999998 9999999998764
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=0.00065 Score=60.33 Aligned_cols=98 Identities=12% Similarity=-0.049 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+.++..+|..+...|+|++|...++.+....|.. ...+. .++ ..+...|++.+|...++++..+.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~---~~a-~~~~~~~~~~~A~~~~~~~~~~~~-----~- 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYS---NRS-AAYAKKGDYQKAYEDGCKTVDLKP-----D- 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHHTCHHHHHHHHHHHHHHCT-----T-
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHH---HHH-HHHHhhccHHHHHHHHHHHHHhCc-----c-
Confidence 35678888999999999999999999988876532 11111 111 566788999999999999888622 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
...+...+|.++...|++++|.+.+++++.
T Consensus 71 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 71 --WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356788899999999999999999988876
No 170
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.59 E-value=0.011 Score=66.47 Aligned_cols=206 Identities=9% Similarity=-0.014 Sum_probs=161.4
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL-AANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~-~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
..+...|++++-.+++.++...+..+... =.+.....+.+... .-|..+.-.+.+.++++.|+.......+-++-.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---k~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~ 103 (394)
T 3txn_A 27 ELYKQEGKAKELADLIKVTRPFLSSISKA---KAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHTCHHHHHHHHHHTTTGGGGSCHH---HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhchH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999988877765411 12233333444332 246667777888888888885544444666778
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhh-CCHHHHHH
Q 002424 752 LLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGH-GGLELRAR 830 (924)
Q Consensus 752 ~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd~~~~A~ 830 (924)
.+|.+|...|++.+|+..+.+.+.-+....+.....++...-..++..+|.. .++...+.++....-.. .++..+|.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~--~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNL--PKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccH--HHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 9999999999999999999999999988888888888888899999999987 99999999998887766 89999999
Q ss_pred HHHHHHHhhh-cCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 831 AFIAEAKCLL-SDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 831 a~~~LAr~~l-a~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
....-|..++ . .+++.+|..++=+|+..|..++.+.... ++..++.+--..++
T Consensus 182 i~~~~Gi~~l~~------~rdyk~A~~~F~eaf~~f~~~~~~~~~~-~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 182 LDLQSGILHAAD------ERDFKTAFSYFYEAFEGFDSVDSVKALT-SLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHT------TSCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHh------ccCHHHHHHHHHHHHhcccccccHHHHH-HHHHHHHHHHHcCC
Confidence 9999999999 8 8999999999999999999988875433 33333333334444
No 171
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.54 E-value=0.00032 Score=80.85 Aligned_cols=122 Identities=10% Similarity=-0.016 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc---------chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---------QVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd---------~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
.+.++..+|..+...|+|++|+..+++++........ ....+.++.++|.++.+.|++..|+..+.+|+.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5678899999999999999999999999987654321 1233678999999999999999999999999987
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhc
Q 002424 777 CQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLS 841 (924)
Q Consensus 777 a~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la 841 (924)
.-. .+.++.++|.++..+|+. ++|+..+++++.+--. -..++..++.++..
T Consensus 347 ~p~------~~~a~~~~g~a~~~~g~~--~~A~~~~~~al~l~P~------~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 347 DSA------NEKGLYRRGEAQLLMNEF--ESAKGDFEKVLEVNPQ------NKAARLQISMCQKK 397 (457)
T ss_dssp STT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTTC----------CHHHHHHHHHHH
T ss_pred CCc------cHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Confidence 532 257889999999999998 9999999999876322 23467777777776
No 172
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00059 Score=60.62 Aligned_cols=99 Identities=8% Similarity=-0.043 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..+..+|..+...|++++|+..+++++.... ....++..+|.++...|+++.|+..+.+++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------
Confidence 467888999999999999999999999987422 23678899999999999999999999999887421
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...+...+|.++..+|+. ++|+..+++++..
T Consensus 71 ~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~ 101 (118)
T 1elw_A 71 WGKGYSRKAAALEFLNRF--EEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHc
Confidence 246778899999999998 9999999998764
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.52 E-value=0.00093 Score=62.32 Aligned_cols=103 Identities=13% Similarity=0.007 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
..+..+..+|..+...|+|++|...++++.+..+.... .......++ ..++..|++++|...+++++.+.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~a-~~~~~~~~~~~A~~~~~~~~~~~~------ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--QAVLHRNRA-ACHLKLEDYDKAETEASKAIEKDG------ 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH--HHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHTS------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH--HHHHHHHHH-HHHHHHccHHHHHHHHHHHHhhCc------
Confidence 34677889999999999999999999998876542100 011111122 677889999999999999988622
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
. ...+++.++.++...|++++|+..+++++..
T Consensus 97 -~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 -G-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -c-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 2577889999999999999999999999875
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.52 E-value=0.0034 Score=68.28 Aligned_cols=167 Identities=17% Similarity=0.067 Sum_probs=111.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCc----
Q 002424 628 HVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDM---- 703 (924)
Q Consensus 628 ~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~---- 703 (924)
+.-+|.++...|++++|++++.+....-+..+.-....+.. ..++..|+.+.|...++++... ++
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~v----qi~L~~~r~d~A~k~l~~~~~~-------~~d~~~ 171 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAI----EVALLNNNVSTASTIFDNYTNA-------IEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHH-------SCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHH----HHHHHCCCHHHHHHHHHHHHhc-------Cccccc
Confidence 35789999999999999999997643322111111122221 6888999999999999998774 33
Q ss_pred -chHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 704 -DLKTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 704 -~~~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+-.....+..+++.+..| ++.+|+..++++... .++ ......++. ++.+.|++++|...+.+.+.+.-..
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence 235556666677788888 999999999997542 221 112233333 8999999999999998666654221
Q ss_pred CC----cHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002424 781 NL----DLLKASATLTLAELWLSFGPNHAKMASNLIQQAL 816 (924)
Q Consensus 781 g~----~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aL 816 (924)
+. +..-+.++.++..+...+|. +|.++++++.
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk----~a~~l~~qL~ 280 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL----DTEDLTNQLV 280 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC----TTHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh----HHHHHHHHHH
Confidence 11 12246667677777777887 3666666554
No 175
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00012 Score=65.19 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+.++..+|..+...|+|++|++.+++++.... ....++..+|.++...|+++.|+..+.+++.+....+....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 467889999999999999999999999988522 23678899999999999999999999999998776667777
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe 813 (924)
...++..+|.++..+|.. +.|+..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~--~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSV--QIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCC--CCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhH--hhhHhHHH
Confidence 788899999999999887 66655443
No 176
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.49 E-value=0.00027 Score=75.75 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=81.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+++++.+.+ . ...++.++|.++...|++++|++.+++++.. ......++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p-------~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 77 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNP-------L-VAVYYTNRALCYLKMQQPEQALADCRRALEL------DGQSVKAHFF 77 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-------c-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHH
Confidence 577899999999999999998622 1 3678899999999999999999999998863 2234678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
+|.++...|++++|+..+.+++.+.-..
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999998655
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.46 E-value=0.00022 Score=65.18 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=71.6
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEI 756 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i 756 (924)
..|++++|..++++++.+. ..|| ....+...+|.++...|+|++|++.+++++.... ....++..+|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~----~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG----LQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP------NHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSC----CCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC----CCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CchHHHHHHHHH
Confidence 4689999999999998852 1122 2678999999999999999999999999988522 126788999999
Q ss_pred HHhcCChhhhHHHHHHHHHHH
Q 002424 757 HKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 757 ~~~~G~~~~Al~~l~~AL~la 777 (924)
+...|++++|+..+.+++.+.
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998874
No 178
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.00067 Score=63.31 Aligned_cols=102 Identities=14% Similarity=0.024 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
.+..++..|..+...|++++|++.+++++... .+......++..+|.++...|++++|+..+.+++.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------ 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc------
Confidence 57889999999999999999999999998731 122234788999999999999999999999999887321
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
...++..+|.++..+|+. ++|+..+++++..
T Consensus 98 ~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~ 128 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRL--DQAVLDLQRCVSL 128 (148)
T ss_dssp CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc
Confidence 156778899999999998 9999999999865
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.37 E-value=0.00019 Score=63.32 Aligned_cols=100 Identities=9% Similarity=-0.058 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLK 786 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~ 786 (924)
..+...+|.++...|++++|+..+++++.... ....++..+|.++...|+++.|+..+.+++.+... ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cch
Confidence 35567889999999999999999999987522 22567889999999999999999999999876422 113
Q ss_pred HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHhH
Q 002424 787 ASATLTLAELWLSF-GPNHAKMASNLIQQALPL 818 (924)
Q Consensus 787 A~al~~La~l~~~l-G~~~~~~Al~lLe~aLp~ 818 (924)
..+...+|.++..+ |+. ++|++.++.++..
T Consensus 76 ~~~~~~l~~~~~~~~~~~--~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKE--VEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCSSCS--HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCH--HHHHHHHHHHhhc
Confidence 46788899999999 999 9999999998754
No 180
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.34 E-value=0.00026 Score=80.57 Aligned_cols=245 Identities=14% Similarity=0.114 Sum_probs=95.8
Q ss_pred HHHHhhCchHHHHhHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccC-chHH--------
Q 002424 593 TAWEAYGSAPLTRVNTLIYATCFSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVS-KSRI-------- 663 (924)
Q Consensus 593 ~~W~~~G~~~ls~~~~~~~~~~~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~-~~~~-------- 663 (924)
.+|..+|...+....-.....+|-+.. + ..++..++..+...|+|++|...++.+.+..+... +..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~---D-~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD---D-PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC---C-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 589999988888775544455554422 1 23566667777778899999888887775421100 0000
Q ss_pred ------------HHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002424 664 ------------LLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAH 731 (924)
Q Consensus 664 ------------~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~ 731 (924)
.....+..+.+....|+|.+|..++.++ .-..+++.++..+|+|++|++.+.
T Consensus 109 ~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 109 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp CHHHHTTTTTCC----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 0001111124555566666666555543 114456666666666666666666
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 002424 732 SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNL 811 (924)
Q Consensus 732 ~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~l 811 (924)
.+. ..+++...+.+....|++..|..+...-. ..+.-+..+...+...|.. ++|+.+
T Consensus 173 KA~-----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----------~~ad~l~~lv~~Yek~G~~--eEai~l 229 (449)
T 1b89_A 173 KAN-----------STRTWKEVCFACVDGKEFRLAQMCGLHIV----------VHADELEELINYYQDRGYF--EELITM 229 (449)
T ss_dssp HHT-----------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT----------TCHHHHHHHHHHHHHTTCH--HHHHHH
T ss_pred HcC-----------CchhHHHHHHHHHHcCcHHHHHHHHHHHH----------hCHhhHHHHHHHHHHCCCH--HHHHHH
Confidence 551 14455555566666666666644333210 0111133477788888986 999999
Q ss_pred HHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHH-----HHHHHHHHHHHHHH
Q 002424 812 IQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHE-----LAAEAFYLIAIVFD 886 (924)
Q Consensus 812 Le~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~-----~~~~vl~~lA~l~~ 886 (924)
++.+|..=+.| .-++..||-++.. =.+++..++++ ..+.++.-|. .+......+..+|.
T Consensus 230 Le~aL~le~ah------~~~ftel~il~~k-------y~p~k~~ehl~---~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 230 LEAALGLERAH------MGMFTELAILYSK-------FKPQKMREHLE---LFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTSTTCC------HHHHHHHHHHHHT-------TCHHHHHHHHH---HHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhCCcHHH------HHHHHHHHHHHHh-------cCHHHHHHHHH---HHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99998654333 3355556655544 22344444443 2334666666 66777889999999
Q ss_pred hcCCHHHHHH
Q 002424 887 KLGRLAEREE 896 (924)
Q Consensus 887 ~lGd~~~r~~ 896 (924)
.-|+.+.|-.
T Consensus 294 ~~~e~d~A~~ 303 (449)
T 1b89_A 294 KYEEYDNAII 303 (449)
T ss_dssp HTTCHHHHHH
T ss_pred hhchHHHHHH
Confidence 9999987655
No 181
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.33 E-value=0.002 Score=58.13 Aligned_cols=92 Identities=10% Similarity=-0.015 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC
Q 002424 683 LAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN 762 (924)
Q Consensus 683 ~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~ 762 (924)
+|...+++++... |. ...+++.+|.++...|++++|+..+++++.... ....++..+|.++...|+
T Consensus 3 ~a~~~~~~al~~~-------p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 3 AITERLEAMLAQG-------TD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp CHHHHHHHHHTTT-------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-------CC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCC
Confidence 4667777777642 21 357899999999999999999999999987522 225688999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCcHHHHH
Q 002424 763 AVLGIPYALASLSFCQLLNLDLLKAS 788 (924)
Q Consensus 763 ~~~Al~~l~~AL~la~~~g~~~~~A~ 788 (924)
++.|+..+.+++.+....++......
T Consensus 69 ~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 69 RAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHH
Confidence 99999999999999987776544333
No 182
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.0017 Score=57.64 Aligned_cols=81 Identities=10% Similarity=-0.042 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+++.+|.++...|++++|++.+++++.... ....++..+|.++...|++++|+..+.+++.++...++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 357789999999999999999999999988532 12458899999999999999999999999999988887765
Q ss_pred HHHHHHH
Q 002424 786 KASATLT 792 (924)
Q Consensus 786 ~A~al~~ 792 (924)
.......
T Consensus 80 ~~~l~~~ 86 (100)
T 3ma5_A 80 LSELQDA 86 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.30 E-value=0.00068 Score=59.68 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=75.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|++.+|...+++++.+.+ + ...+...+|.++...|++++|++.+++++.... ......++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~-----~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~ 81 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP-----E---ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE----DEYNKDVWAA 81 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC----CTTCHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc-----C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc----ccchHHHHHH
Confidence 567789999999999999988632 1 356788999999999999999999999987421 1224678999
Q ss_pred HHHHHHhc-CChhhhHHHHHHHHHH
Q 002424 753 LAEIHKKS-GNAVLGIPYALASLSF 776 (924)
Q Consensus 753 la~i~~~~-G~~~~Al~~l~~AL~l 776 (924)
+|.++... |++++|+..+.+++..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 99999999 9999999999887653
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.0013 Score=56.04 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 702 DMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 702 D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
|+.....+...+|.++...|++++|+..+++++.... ....++..+|.++...|++++|+..+.+++.+.-
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--- 74 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--- 74 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---
Confidence 4555778899999999999999999999999987522 2356888999999999999999999999988742
Q ss_pred CcHHHHHHHHHHHHHHHHcC
Q 002424 782 LDLLKASATLTLAELWLSFG 801 (924)
Q Consensus 782 ~~~~~A~al~~La~l~~~lG 801 (924)
....+...+|.++..+|
T Consensus 75 ---~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 ---NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---TCHHHHHHHHHHHHHHC
T ss_pred ---CCHHHHHHHHHHHHhcC
Confidence 12456677888876654
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.23 E-value=0.00041 Score=63.30 Aligned_cols=90 Identities=9% Similarity=-0.012 Sum_probs=71.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 719 AANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 719 ~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
..|++++|++.+++++... .+......++..+|.++...|+++.|+..+.+++.+.-.. ..++..+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG---LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcC---CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHH
Confidence 4689999999999998731 0124567899999999999999999999999999874322 567888999999
Q ss_pred HcCCChHHHHHHHHHHHHhHH
Q 002424 799 SFGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 799 ~lG~~~~~~Al~lLe~aLp~v 819 (924)
.+|+. ++|+..+++++...
T Consensus 73 ~~g~~--~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 73 NLGRY--EQGVELLLKIIAET 91 (117)
T ss_dssp HHTCH--HHHHHHHHHHHHHH
T ss_pred HcCCH--HHHHHHHHHHHHhC
Confidence 99998 99999999998763
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.18 E-value=0.0006 Score=75.23 Aligned_cols=139 Identities=9% Similarity=-0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc-----------chhHHHHHHHHHHHHHhcCChhhhHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL-----------QVENASVLLLLAEIHKKSGNAVLGIPYALASL 774 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd-----------~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL 774 (924)
.+..+..+|..+...|+|++|+..+++++........ ......++.++|.++...|++..|+.++.+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888999999999999999999999875332110 00011488999999999999999999999999
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHH
Q 002424 775 SFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAV 854 (924)
Q Consensus 775 ~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~A 854 (924)
.+.- ....++..+|.++..+|+. ++|+..+++++..--. ...++..|+++.... .+...++
T Consensus 258 ~~~p------~~~~a~~~lg~a~~~~g~~--~~A~~~l~~al~l~p~------~~~a~~~L~~l~~~~-----~~~~~~a 318 (338)
T 2if4_A 258 TEEE------KNPKALFRRGKAKAELGQM--DSARDDFRKAQKYAPD------DKAIRRELRALAEQE-----KALYQKQ 318 (338)
T ss_dssp HHCT------TCHHHHHHHHHHHHTTTCH--HHHHHHHHHTTC-------------------------------------
T ss_pred HhCC------CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHH-----HHHHHHH
Confidence 8742 2256788999999999998 9999999999876432 234556666654431 3444555
Q ss_pred HHHHHHHHH
Q 002424 855 LDPLRQASE 863 (924)
Q Consensus 855 l~~L~~A~~ 863 (924)
...+++++.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 555555544
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00046 Score=76.17 Aligned_cols=138 Identities=11% Similarity=-0.049 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc------h--HHH----HHHHhhHHHHHHHcCCHHHHHHHHHHH
Q 002424 624 AALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK------S--RIL----LLKLQLLHERSLHRGHLKLAQKVCDEL 691 (924)
Q Consensus 624 ~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~------~--~~~----~l~l~l~~~~al~~G~~~~A~~~l~~l 691 (924)
.+..+.++|..+...|+|++|...++++....+.... . ... .+..+++ ..++..|+|.+|...++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla-~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA-ACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHH-HHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 4566888999999999999999999999987653210 0 000 0111222 5667788888888888888
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH-HhcCChhhhHHHH
Q 002424 692 GVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIH-KKSGNAVLGIPYA 770 (924)
Q Consensus 692 l~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~-~~~G~~~~Al~~l 770 (924)
+.+.+ . ...+++++|.++..+|++++|+..+++++.+.. ....++..++.+. ...+...++...+
T Consensus 257 l~~~p-------~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p------~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 257 LTEEE-------K-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP------DDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp HHHCT-------T-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHhCC-------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77522 1 356778888888888888888888887765422 1234445555552 3344455555555
Q ss_pred HHHHHH
Q 002424 771 LASLSF 776 (924)
Q Consensus 771 ~~AL~l 776 (924)
.+++..
T Consensus 323 ~~~l~~ 328 (338)
T 2if4_A 323 KGIFKG 328 (338)
T ss_dssp ------
T ss_pred HHhhCC
Confidence 555544
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00015 Score=64.62 Aligned_cols=88 Identities=10% Similarity=-0.071 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCH
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGL 825 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~ 825 (924)
.+.++..+|.++...|++.+|+..+.+++.+.-. ...++..+|.++..+|+. ++|+..+++++..--..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEY--TQAIQMCQQGLRYTSTAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTSCSSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhCCCccHH
Confidence 3678889999999999999999999999987432 256788899999999998 99999999999887777777
Q ss_pred HHHHHHHHHHHHhhhc
Q 002424 826 ELRARAFIAEAKCLLS 841 (924)
Q Consensus 826 ~~~A~a~~~LAr~~la 841 (924)
...+.+++.+|.++..
T Consensus 75 ~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888988877
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.13 E-value=0.00043 Score=80.33 Aligned_cols=119 Identities=8% Similarity=-0.098 Sum_probs=90.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..++..|+|++|...+++++.+.+ . ...++.++|.++..+|++++|++.++++++. + .....++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p-------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----~-p~~~~~~~~ 79 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP-------S-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----D-KKYIKGYYR 79 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT-------T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----C-TTCHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC-------c-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----C-CCCHHHHHH
Confidence 355689999999999999998732 1 3688999999999999999999999999874 2 234678999
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH--HHHcCCChHHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL--WLSFGPNHAKMASNLIQ 813 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l--~~~lG~~~~~~Al~lLe 813 (924)
+|.++...|++++|+..+.+|+.+.-... .+...++.+ +...|+. ++|+.+++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~g~~--~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDK------DAKMKYQECNKIVKQKAF--ERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCT------THHHHHHHHHHHHHHHHH--CCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHHH--HHHhcccc
Confidence 99999999999999999999998743221 233445555 5556665 77777777
No 190
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.11 E-value=0.012 Score=63.92 Aligned_cols=163 Identities=15% Similarity=0.016 Sum_probs=109.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc-----hhH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDM-DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ-----VEN 746 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~-~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~-----~~~ 746 (924)
..+...|++++|...+.+.+.. ++ ....++....+.+++..|+.+.|.+.++++... ++ ...
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~-------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-----~~d~~~~~d~ 175 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDN-------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-----IEDTVSGDNE 175 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcc-------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CccccccchH
Confidence 6777899999999999988652 11 248899999999999999999999999987652 33 234
Q ss_pred HHHHHHHHHHHHhcC--ChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 747 ASVLLLLAEIHKKSG--NAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 747 a~al~~la~i~~~~G--~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
+.+.+.-|.|....| ++..|+..+.+.. ..... .-....+ +. +++++|+. ++|...|+.++...-+.+.
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~---~~~p~-~~~~~lL--ln-~~~~~g~~--~eAe~~L~~l~~~~p~~~~ 246 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELS---QTFPT-WKTQLGL--LN-LHLQQRNI--AEAQGIVELLLSDYYSVEQ 246 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---TTSCS-HHHHHHH--HH-HHHHHTCH--HHHHHHHHHHHSHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhCCC-cccHHHH--HH-HHHHcCCH--HHHHHHHHHHHHhcccccc
Confidence 455555565566666 9999999998853 33332 1111222 33 78889997 9999999976655322111
Q ss_pred H----HHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH
Q 002424 825 L----ELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE 864 (924)
Q Consensus 825 ~----~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~ 864 (924)
. ..-+.++..+..+... .|+ +|.++++++...
T Consensus 247 k~~~~p~~~~~LaN~i~l~~~------lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 247 KENAVLYKPTFLANQITLALM------QGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CHHHHSSHHHHHHHHHHHHHH------TTC--TTHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHH------hCh--HHHHHHHHHHHh
Confidence 0 1235556555555555 444 566777776653
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.99 E-value=0.0055 Score=54.27 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=71.6
Q ss_pred CCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCChHHHHHHH
Q 002424 315 APELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGHPKQALDVL 394 (924)
Q Consensus 315 ~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~~~~A~~~l 394 (924)
.|+-+.++|..-...++.|+|..|++.+.+...... .+..+..++|.++...|++++|+..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP------------------DYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------TCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 577888888888888999999999999998887642 12338899999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 002424 395 TEAVCLSQQHSNDTCLAYTLAAIS 418 (924)
Q Consensus 395 ~Eai~~Aqe~~D~~cl~~~l~wl~ 418 (924)
++||.++...+|.........++.
T Consensus 65 ~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 65 AQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhhhcCCchhHHHHHHHHHH
Confidence 999999999999887776665443
No 192
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.94 E-value=0.016 Score=63.02 Aligned_cols=209 Identities=7% Similarity=-0.069 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc---CCHHHHHHHHHHHhhhhhccC
Q 002424 625 ALAHVKLIQHLAVFK--GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR---GHLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 625 ~~a~~~La~~~a~~G--~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~---G~~~~A~~~l~~ll~l~~~~~ 699 (924)
..+....+.++...| ++++++..++.++...|..-. +|.-+-.+........ +++.++..++.+++..
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~--aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----- 139 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ--IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----- 139 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh-----
Confidence 356777778888888 999999999999988775433 3332211100111123 8999999999999985
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC------hhhhHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQFS--EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN------AVLGIPYAL 771 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~~~--eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~------~~~Al~~l~ 771 (924)
||. -..++..++.++...|+++ ++++.++.++.. ......++..++.+....|+ +++++..+.
T Consensus 140 --~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~ 210 (306)
T 3dra_A 140 --DPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK 210 (306)
T ss_dssp --CTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH
T ss_pred --CCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH
Confidence 322 4688999999999999999 999999998863 23346678888888888887 777888887
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCCh
Q 002424 772 ASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP 851 (924)
Q Consensus 772 ~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~ 851 (924)
+++.+.- + -..+...++.++..+|.. .++.....++++..- +. ...-..++..+|.++.. .|+.
T Consensus 211 ~aI~~~p--~----n~SaW~y~~~ll~~~~~~-~~~~~~~~~~~~~~~-~~--~~~s~~al~~la~~~~~------~~~~ 274 (306)
T 3dra_A 211 DKIVKCP--Q----NPSTWNYLLGIHERFDRS-ITQLEEFSLQFVDLE-KD--QVTSSFALETLAKIYTQ------QKKY 274 (306)
T ss_dssp HHHHHCS--S----CHHHHHHHHHHHHHTTCC-GGGGHHHHHTTEEGG-GT--EESCHHHHHHHHHHHHH------TTCH
T ss_pred HHHHhCC--C----CccHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcc-CC--CCCCHHHHHHHHHHHHc------cCCH
Confidence 7776531 1 125566788888889986 133445666555421 00 01123477888888887 7899
Q ss_pred HHHHHHHHHHHHHH
Q 002424 852 EAVLDPLRQASEEL 865 (924)
Q Consensus 852 ~~Al~~L~~A~~~f 865 (924)
++|+++++.+.+.+
T Consensus 275 ~~A~~~~~~l~~~~ 288 (306)
T 3dra_A 275 NESRTVYDLLKSKY 288 (306)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886544
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.80 E-value=0.014 Score=52.41 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=78.7
Q ss_pred HHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCC
Q 002424 307 ILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYSAGTEGFDFAQPSIGCNSFGRYEIALLCLGMMHFHFGH 386 (924)
Q Consensus 307 ~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~~~~~~~~r~~~~~~~~~~~~~~yall~la~~h~~fg~ 386 (924)
.+....+..|+.+.+++..-...++.|+|..|++.+.+...... ....+..++|.++...|+
T Consensus 7 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~ 68 (115)
T 2kat_A 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------------------TYSVAWKWLGKTLQGQGD 68 (115)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------------------CcHHHHHHHHHHHHHcCC
Confidence 45555667888888888888888999999999999998877642 223477899999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 002424 387 PKQALDVLTEAVCLSQQHSNDTCLAYTLAAISNLLS 422 (924)
Q Consensus 387 ~~~A~~~l~Eai~~Aqe~~D~~cl~~~l~wl~~l~~ 422 (924)
+++|+..+++++.+....+|...+......+..+..
T Consensus 69 ~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 69 RAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999998766665555444443
No 194
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.079 Score=60.64 Aligned_cols=127 Identities=17% Similarity=-0.025 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHh-hCC
Q 002424 746 NASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILG-HGG 824 (924)
Q Consensus 746 ~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~-~gd 824 (924)
++++...+|.++...|++..|...+.+-..-+.+.-+.....+..+....+++..++. .+|..++..+.+.+.. ..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~--~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDY--SQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhcccCCc
Confidence 5777889999999999999999999877666666667778888888899999999998 9999999999876654 467
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 825 LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 825 ~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
..++++.+...|+.+.. .+++.+|..++.+++..+...+++.....+++.
T Consensus 214 ~~lk~~~~~~~~~~~~~------e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLH------KREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHHHHHHHHHHH------HCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 88999999999999999 899999999999999999999998766555543
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.65 E-value=0.0095 Score=56.37 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Q 002424 720 ANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS 799 (924)
Q Consensus 720 ~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~ 799 (924)
.+|+++|+++++++.+. |+.... +|.+|...+...+|+.++.+|... |+ +.+...||.++..
T Consensus 8 ~~d~~~A~~~~~~aa~~----g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 8 KKDLKKAIQYYVKACEL----NEMFGC------LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHHT----TCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC----CCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHc
Confidence 35788999999988763 443332 899999988899999999888765 33 4778889999987
Q ss_pred ----cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHH
Q 002424 800 ----FGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASE 863 (924)
Q Consensus 800 ----lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~ 863 (924)
.++. ++|+..++++... |+ ..+++.||.++... .+..+++++|+.++++|.+
T Consensus 70 G~g~~~d~--~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G--~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 70 GKYVKKDL--RKAAQYYSKACGL----ND----QDGCLILGYKQYAG--KGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CSSSCCCH--HHHHHHHHHHHHT----TC----HHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCCccH--HHHHHHHHHHHcC----CC----HHHHHHHHHHHHCC--CCCCcCHHHHHHHHHHHHH
Confidence 5555 9999999999643 55 56788999999874 2346889999999999976
No 196
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.41 E-value=0.0018 Score=73.69 Aligned_cols=204 Identities=13% Similarity=0.047 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+...||.++...|++.+|.+.+..+. +...+. .+. ..+...|+|++|...+..+... ..
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~-------D~~~y~---~V~-~~ae~~g~~EeAi~yl~~ark~---~~------ 92 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKAD-------DPSSYM---EVV-QAANTSGNWEELVKYLQMARKK---AR------ 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCC-------CHHHHH---HHH-HHHHhCCCHHHHHHHHHHHHHh---Cc------
Confidence 377899999999999999999887543 211110 011 3555688999988877766542 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
...+...++.++.+.|++.++.++++. + ...++..+|..+...|.++.|..++.++
T Consensus 93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~~----------p--n~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------ 148 (449)
T 1b89_A 93 ESYVETELIFALAKTNRLAELEEFING----------P--NNAHIQQVGDRCYDEKMYDAAKLLYNNV------------ 148 (449)
T ss_dssp ----------------CHHHHTTTTTC----------C------------------CTTTHHHHHHHT------------
T ss_pred cchhHHHHHHHHHHhCCHHHHHHHHcC----------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHh------------
Confidence 134455566677777777777666542 1 1126666666677777777776666654
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH---------HHhhCCHHHH----------HHHHHHHHHhhhcCCCCC
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPL---------ILGHGGLELR----------ARAFIAEAKCLLSDPSFS 846 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~---------vl~~gd~~~~----------A~a~~~LAr~~la~~~~~ 846 (924)
.....||.++..+|+. ++|.+.++.+-.. +...|+.... +.-+..+..+|..
T Consensus 149 --~n~~~LA~~L~~Lg~y--q~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek----- 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEY--QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD----- 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCH--HHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHH-----
T ss_pred --hhHHHHHHHHHHhccH--HHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHH-----
Confidence 1234466666666665 6666666655211 0000100000 0001123345555
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcC
Q 002424 847 VSQNPEAVLDPLRQASEELQVLEDHELAAEAFYLIAIVFDKLG 889 (924)
Q Consensus 847 ~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lG 889 (924)
.|.+++|+.++++|+.. + .....++..+|.+|..-.
T Consensus 220 -~G~~eEai~lLe~aL~l----e--~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 220 -RGYFEELITMLEAALGL----E--RAHMGMFTELAILYSKFK 255 (449)
T ss_dssp -TTCHHHHHHHHHHHTTS----T--TCCHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHhCC----c--HHHHHHHHHHHHHHHhcC
Confidence 67788888888877532 1 333556667777776654
No 197
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.38 E-value=0.014 Score=57.06 Aligned_cols=129 Identities=12% Similarity=0.023 Sum_probs=98.5
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHccc---chhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNL---QVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQL 779 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd---~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~ 779 (924)
|.+...++...+.-+...|.|+.|.-+..-++.......+ +..+++++..+|+++...|+|.+|...+.+||.+.+.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 4456677888888999999999999999988877654333 5678999999999999999999999999999999873
Q ss_pred hC-------------------CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhh
Q 002424 780 LN-------------------LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLL 840 (924)
Q Consensus 780 ~g-------------------~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~l 840 (924)
.- +..-+.+.+..+|.++..+|+. ++|+..|+.+=+.. .-.+.-+.|||.|.
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~--~~Ai~~Le~Ip~k~-------Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD--KDAIAILDGIPSRQ-------RTPKINMLLANLYK 166 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCH--HHHHHHHHTSCGGG-------CCHHHHHHHHHHCC
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH--HHHHHHHhcCCchh-------cCHHHHHHHHHHhc
Confidence 21 1123558899999999999998 99999888763332 22456667777664
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.17 E-value=0.033 Score=46.96 Aligned_cols=85 Identities=15% Similarity=0.037 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVD 702 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D 702 (924)
....++.++|..+...|+|++|...++++.+..+.. ...+. .++ ..+...|++++|...+++++.+.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~---~l~-~~~~~~~~~~~A~~~~~~a~~~~p------ 74 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWY---NLG-NAYYKQGDYDEAIEYYQKALELDP------ 74 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH---HHH-HHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHH---HHH-HHHHHHhhHHHHHHHHHHHHhcCC------
Confidence 456788999999999999999999999999876532 11111 111 677889999999999999988632
Q ss_pred cchHHHHHHHHHHHHHHcC
Q 002424 703 MDLKTEASLRHARTLLAAN 721 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G 721 (924)
. ...+...++.++...|
T Consensus 75 -~-~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 -N-NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -T-CHHHHHHHHHHHHHHC
T ss_pred -C-CHHHHHHHHHHHHhcC
Confidence 1 3466777887776654
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.11 E-value=0.0051 Score=60.09 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=69.9
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHcccchhH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFS----------EAAAVAHSLFCMCYKFNLQVEN 746 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~----------eAl~~l~~aL~~~~~~gd~~~~ 746 (924)
+.+.|.+|...++++..+.+ . .++++.+.|.++...|+++ +|+..+++++++- ...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P----~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------P~~ 79 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP----L----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------PKK 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT----T----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------TTC
T ss_pred HHhHHHHHHHHHHHHHHHCC----C----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC------cCc
Confidence 45678899999999988633 1 4688999999999998864 8888888887752 234
Q ss_pred HHHHHHHHHHHHhcC-----------ChhhhHHHHHHHHHHHH
Q 002424 747 ASVLLLLAEIHKKSG-----------NAVLGIPYALASLSFCQ 778 (924)
Q Consensus 747 a~al~~la~i~~~~G-----------~~~~Al~~l~~AL~la~ 778 (924)
..++..+|.+|...| ++++|+.++.+|+++--
T Consensus 80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 778899999998875 89999999999998853
No 200
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.05 E-value=0.17 Score=54.83 Aligned_cols=227 Identities=9% Similarity=-0.016 Sum_probs=143.8
Q ss_pred HHHccCH-HHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhhhhhccCCCCcchHHHHHH
Q 002424 635 LAVFKGY-KEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVTGVDMDLKTEASL 711 (924)
Q Consensus 635 ~a~~G~y-~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~ 711 (924)
....|+| ++|+...+.++..-|.. ...|..+- ......| ++.++..++..++...+. ...+++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~--~taWn~R~----~~L~~l~~~~~~eeL~~~~~~L~~nPk--------~y~aW~ 107 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASH--YTIWIYRF----NILKNLPNRNLYDELDWCEEIALDNEK--------NYQIWN 107 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHH----HHHHTCTTSCHHHHHHHHHHHHHHCTT--------CCHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHH--HHHHHHHH----HHHHHcccccHHHHHHHHHHHHHHCcc--------cHHHHH
Confidence 3445554 68999999998875532 22454441 2334566 999999999999986442 246777
Q ss_pred HHHHHH----HHc---CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh--hhHHHHHHHHHHHHHhCC
Q 002424 712 RHARTL----LAA---NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--LGIPYALASLSFCQLLNL 782 (924)
Q Consensus 712 ~~a~ll----~~~---G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~--~Al~~l~~AL~la~~~g~ 782 (924)
.++.++ ... ++++++++.++.++.. ......++..++.+....|.++ .++..+.+++..--
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~---- 177 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL---- 177 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC----
Confidence 788887 666 8999999999999873 2334678888899999999988 89999888886531
Q ss_pred cHHHHHHHHHHHHHHHHcCCC----hHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCC-hHHHHHH
Q 002424 783 DLLKASATLTLAELWLSFGPN----HAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQN-PEAVLDP 857 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~~----~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~-~~~Al~~ 857 (924)
. -..|..+-+.+...+|.. .++++++.+++++..--...+ +.+.++-++.. .|. .+.+.++
T Consensus 178 ~--N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S------aW~y~~~ll~~------~~~~~~~~~~~ 243 (306)
T 3dra_A 178 K--NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS------TWNYLLGIHER------FDRSITQLEEF 243 (306)
T ss_dssp T--CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH------HHHHHHHHHHH------TTCCGGGGHHH
T ss_pred C--CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc------HHHHHHHHHHh------cCCChHHHHHH
Confidence 1 123445556666666651 137888888887765332222 33344444433 233 2334444
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 002424 858 LRQASEELQVLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 858 L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~~l~ 905 (924)
.+++...- +....-..++..+|.+|...|+.+++. ..|..+.
T Consensus 244 ~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~---~~~~~l~ 285 (306)
T 3dra_A 244 SLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESR---TVYDLLK 285 (306)
T ss_dssp HHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHH---HHHHHHH
T ss_pred HHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHH---HHHHHHH
Confidence 44443210 001122347888999999888886644 4444443
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.95 E-value=0.038 Score=52.13 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHH
Q 002424 679 GHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHK 758 (924)
Q Consensus 679 G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~ 758 (924)
.++.+|..+++++... + ++... ++.++...+..++|+++++++... +...++..+|.+|.
T Consensus 9 ~d~~~A~~~~~~aa~~----g--~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~ 68 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL----N--EMFGC------LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYE 68 (138)
T ss_dssp HHHHHHHHHHHHHHHT----T--CTTHH------HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC----C--CHhhh------HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHH
Confidence 4688899999988763 3 33222 888888888999999999988762 44788999999999
Q ss_pred h----cCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHhH
Q 002424 759 K----SGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLS----FGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 759 ~----~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~----lG~~~~~~Al~lLe~aLp~ 818 (924)
. .+++.+|+.++.+|.+. |+ +.+...||.++.. .++. ++|+..++.+...
T Consensus 69 ~G~g~~~d~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~--~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 69 NGKYVKKDLRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNE--KQAVKTFEKACRL 126 (138)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCH--HHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCH--HHHHHHHHHHHHC
Confidence 8 89999999999988754 33 4678889999987 5665 9999999988543
No 202
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.93 E-value=0.23 Score=59.82 Aligned_cols=222 Identities=10% Similarity=-0.004 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHH-HHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCH
Q 002424 645 FSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQ-KVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQF 723 (924)
Q Consensus 645 ~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~-~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~ 723 (924)
..++++++..+|. ...+|.... ......|+..+|. .+++++....+ + ........+.+....|++
T Consensus 329 ~~~Ye~aL~~~p~--~~~lW~~ya----~~~~~~~~~~~a~r~il~rAi~~~P-----~---s~~Lwl~~a~~ee~~~~~ 394 (679)
T 4e6h_A 329 TYVYMQAAQHVCF--APEIWFNMA----NYQGEKNTDSTVITKYLKLGQQCIP-----N---SAVLAFSLSEQYELNTKI 394 (679)
T ss_dssp HHHHHHHHHHTTT--CHHHHHHHH----HHHHHHSCCTTHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHH----HHHHhcCcHHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhCCH
Confidence 3456666666653 344666543 3345668888886 99998877433 1 235567788888899999
Q ss_pred HHHHHHHHHHHHHHHHc------ccc----------hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHH
Q 002424 724 SEAAAVAHSLFCMCYKF------NLQ----------VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKA 787 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~------gd~----------~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A 787 (924)
++|.+.++.++...... ..+ .....+++..+.+..+.|..++|...+.+|+........
T Consensus 395 e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~----- 469 (679)
T 4e6h_A 395 PEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP----- 469 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT-----
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh-----
Confidence 99999999988743100 000 112446777788888889999999999888765111111
Q ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHH
Q 002424 788 SATLTLAELWLSFGP-NHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQ 866 (924)
Q Consensus 788 ~al~~La~l~~~lG~-~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~ 866 (924)
.+....|.+....|. . ++|+.+++.+|...-.... ....+++.... .|+.+.|...+++|+....
T Consensus 470 ~lyi~~A~lE~~~~~d~--e~Ar~ife~~Lk~~p~~~~------~w~~y~~fe~~------~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDT--KTACKVLELGLKYFATDGE------YINKYLDFLIY------VNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHHTTTSCC--HHHHHHHHHHHHHHTTCHH------HHHHHHHHHHH------HTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHCCCchH------HHHHHHHHHHh------CCCHHHHHHHHHHHHHhcC
Confidence 222334444445554 6 8999999999987543222 23344454555 6778888888888876432
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002424 867 VLEDHELAAEAFYLIAIVFDKLGRLAEREEAAALFK 902 (924)
Q Consensus 867 ~l~~~~~~~~vl~~lA~l~~~lGd~~~r~~aa~~f~ 902 (924)
++.....+.......-...|+.+........+.
T Consensus 536 ---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~ 568 (679)
T 4e6h_A 536 ---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF 568 (679)
T ss_dssp ---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233555666666777777888877555444443
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.67 E-value=0.13 Score=56.95 Aligned_cols=140 Identities=11% Similarity=-0.031 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC--hhhhHHHHHHHHHHHHHh
Q 002424 706 KTEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN--AVLGIPYALASLSFCQLL 780 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~--~~~Al~~l~~AL~la~~~ 780 (924)
.+.-.+..|.-++..++ +.+|+++++++++. ......+.+...++.+...... .......+.+++......
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS----SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 34555666666666554 47888999988874 3334455555555554332222 222233344455533444
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHH
Q 002424 781 NLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQ 860 (924)
Q Consensus 781 g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~ 860 (924)
......+.++..++.++...|+. ++|+..+++++.+- .+ +.++..+|+++.- .|++++|++.+++
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~--d~A~~~l~rAl~Ln---~s----~~a~~llG~~~~~------~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKT--DESYQAINTGIDLE---MS----WLNYVLLGKVYEM------KGMNREAADAYLT 335 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHC---CC----HHHHHHHHHHHHH------TTCHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHhcC---CC----HHHHHHHHHHHHH------CCCHHHHHHHHHH
Confidence 44555666777777777778998 99999999998882 33 5678899999998 8999999999999
Q ss_pred HHHH
Q 002424 861 ASEE 864 (924)
Q Consensus 861 A~~~ 864 (924)
|+..
T Consensus 336 AlrL 339 (372)
T 3ly7_A 336 AFNL 339 (372)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9874
No 204
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.83 Score=52.08 Aligned_cols=210 Identities=13% Similarity=0.022 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchH-HHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhhhhhccC
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSR-ILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~-~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~l~~~~~ 699 (924)
...+++..+...+...|+|+...+++.-.. ..++..... ..++...+ ...-... +...-......+ ..+.
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls-kkr~qlk~ai~~~V~~~~--~~l~~~~~~d~~~~~~~i~~l----~~vt 126 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLS-KKHGQLKLSIQYMIQKVM--EYLKSSKSLDLNTRISVIETI----RVVT 126 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHH--HHHHHHCTTHHHHHHHHHHCC----SSSS
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHH--HHHhcCCchhHHHHHHHHHHH----HHHh
Confidence 345667777788888899988877665322 222221222 12222111 1111112 111112222211 2222
Q ss_pred CCCcc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 700 GVDMD---LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 700 ~~D~~---~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
..-.. .++.....++.++...|++.+|.+.+.++...+...-+......+.+....++...+++.+|...+.++...
T Consensus 127 e~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 127 ENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 11111 166778899999999999999999999998887766677788899999999999999999999999887655
Q ss_pred H-HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHH-HHhhhc
Q 002424 777 C-QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAE-AKCLLS 841 (924)
Q Consensus 777 a-~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~L-Ar~~la 841 (924)
+ .....+...+.-...+|.++..-++. .+|-.++.++.......++....-.++... ..+.++
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y--~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa 271 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREY--LEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLS 271 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhC
Confidence 5 44456778888888899999888876 999999999999988888876544443333 333444
No 205
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.64 E-value=0.1 Score=50.90 Aligned_cols=107 Identities=11% Similarity=-0.023 Sum_probs=84.0
Q ss_pred HHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccC-CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc
Q 002424 663 ILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVT-GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN 741 (924)
Q Consensus 663 ~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~-~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g 741 (924)
.|.+..++ ...+..|.|+.|+-+..-++++...-. ..-|...+++....|+.+...|+|.+|...++++|..++...
T Consensus 20 ~~~l~dqi--k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 20 HMNVIDHV--RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp -CCHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHH--HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 35555554 677899999999999998888743211 113677899999999999999999999999999999888422
Q ss_pred -------------------cchhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 742 -------------------LQVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 742 -------------------d~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
+...+.++...+|.+|.+.|++..|+..+.
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 122345788889999999999999998875
No 206
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.64 E-value=0.26 Score=57.24 Aligned_cols=168 Identities=11% Similarity=-0.015 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHH---------HcCCHHHHHHHHHHHhhhhhc
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSL---------HRGHLKLAQKVCDELGVMASS 697 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al---------~~G~~~~A~~~l~~ll~l~~~ 697 (924)
.+.++-..+++.|++++|+++++++.+.- ...+.. .++.+..... ..|++.+|.+++.++.. ..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~---tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~--~G 100 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQY---HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV--DK 100 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHH---HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHh---HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--hC
Confidence 34555677889999999999999988642 222211 0110001111 23457889999998876 22
Q ss_pred cCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 698 VTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 698 ~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+. |. ..+...+...+.+.|++++|+++++++... |.. ....+...+-..+.+.|+.++|...+.+-..
T Consensus 101 ~~---Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-- 168 (501)
T 4g26_A 101 VV---PN--EATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVE-- 168 (501)
T ss_dssp CC---CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 22 22 355677888899999999999999988652 322 2344555556677899999999999876543
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 778 QLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 778 ~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.|...-. .....|-..+...|+. ++|.+++++--..
T Consensus 169 --~G~~Pd~-~ty~~Li~~~~~~g~~--d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 --SEVVPEE-PELAALLKVSMDTKNA--DKVYKTLQRLRDL 204 (501)
T ss_dssp --TTCCCCH-HHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred --cCCCCCH-HHHHHHHHHHhhCCCH--HHHHHHHHHHHHh
Confidence 3332222 2345566778889998 9999999886443
No 207
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.52 E-value=0.068 Score=47.74 Aligned_cols=71 Identities=10% Similarity=0.050 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
+.-.+.+|..+...|+|..|..+++.++....... .......++..+|.++.+.|++..|+.++.+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45567899999999999999999999998765322 234567899999999999999999999999998774
No 208
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.50 E-value=0.39 Score=57.88 Aligned_cols=213 Identities=8% Similarity=-0.051 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHccCHHHHH-HHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhc-c-----
Q 002424 626 LAHVKLIQHLAVFKGYKEAF-SALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASS-V----- 698 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~-~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~-~----- 698 (924)
......|..+...|+.++|. .+|++|....|. ...+|.... ......|+++.|+.++++++..... .
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~--s~~Lwl~~a----~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~ 417 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN--SAVLAFSLS----EQYELNTKIPEIETTILSCIDRIHLDLAALME 417 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 45556677777889989997 999999876662 222333221 4455789999999999999874210 0
Q ss_pred -CCCC-------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC-hhhhHHH
Q 002424 699 -TGVD-------MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-AVLGIPY 769 (924)
Q Consensus 699 -~~~D-------~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~-~~~Al~~ 769 (924)
.+.. ......++...+.+..+.|+.++|...+.+++... +... ..+....|.+-.+.|. +++|...
T Consensus 418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~~--~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLVT--PDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGSC--THHHHHHHHHHHTTTSCCHHHHHH
T ss_pred ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCCC--hHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0000 00134567777888889999999999999887641 1111 2344556667667655 8999999
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
+.+++..+- ... ......+......|.. ++|+.++++++..... .......+..+.+-... -|
T Consensus 493 fe~~Lk~~p---~~~---~~w~~y~~fe~~~~~~--~~AR~lferal~~~~~---~~~~~~lw~~~~~fE~~------~G 555 (679)
T 4e6h_A 493 LELGLKYFA---TDG---EYINKYLDFLIYVNEE--SQVKSLFESSIDKISD---SHLLKMIFQKVIFFESK------VG 555 (679)
T ss_dssp HHHHHHHHT---TCH---HHHHHHHHHHHHHTCH--HHHHHHHHHHTTTSSS---TTHHHHHHHHHHHHHHH------TC
T ss_pred HHHHHHHCC---Cch---HHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHH------cC
Confidence 999998753 221 1223455556668887 9999999999865431 11233344444444444 68
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002424 850 NPEAVLDPLRQASEELQ 866 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~ 866 (924)
+.+.+....+++.+.|-
T Consensus 556 ~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 556 SLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CSHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 88888888888877664
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.25 E-value=0.055 Score=46.77 Aligned_cols=62 Identities=11% Similarity=0.182 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHH-HHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 711 LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENAS-VLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 711 ~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~-al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
+..|..+...|++++|++.+++++.. ++. ... ++..+|.++...|++++|+..+.+++.+.-
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT-----EPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH-----CSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-----CCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56788899999999999999999874 222 245 889999999999999999999999998753
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.79 E-value=0.64 Score=51.48 Aligned_cols=141 Identities=9% Similarity=-0.086 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHhhccCchHHH-HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCC
Q 002424 625 ALAHVKLIQHLAVFK---GYKEAFSALKIAEEKFLSVSKSRIL-LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTG 700 (924)
Q Consensus 625 ~~a~~~La~~~a~~G---~y~eA~~~L~~a~~~f~~~~~~~~~-~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~ 700 (924)
+.-++-.|..+..++ .+.+|..+|++|.++-|.......+ .++.. .+....+.-......+.++......+.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~---~~~~~~~~~~~~~~~l~~a~~a~~a~~- 271 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI---VRHSQHPLDEKQLAALNTEIDNIVTLP- 271 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HHHHHSCCCHHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHhccCCCchhhHHHHHHHHHHHHhcc-
Confidence 334444455555544 4689999999999987754443221 11110 122221111111111111111101111
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 701 VDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 701 ~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.|+ ..+.+...++..+...|++++|+..+++++.+. + ...++..+|.++.-.|++++|.+.+.+|+.+.
T Consensus 272 ~~~-~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELN-NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCC-cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 245667777777788899999999999999862 2 14567889999999999999999999998884
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.72 E-value=0.3 Score=41.89 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=48.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTE-ASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~-a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..++..|++.+|...+++++.+ +|. ... +++.+|.++...|++++|++.+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~-------~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT-------EPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-------CSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH-------CCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5677899999999999999886 222 245 8999999999999999999999999885
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.21 E-value=0.063 Score=52.30 Aligned_cols=85 Identities=11% Similarity=-0.081 Sum_probs=62.5
Q ss_pred HccCHHHHHHHHHHHHHHhhccCchHH-HHHHHhhHHHHHHHc----------CCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 637 VFKGYKEAFSALKIAEEKFLSVSKSRI-LLLKLQLLHERSLHR----------GHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~~~~~~-~~l~l~l~~~~al~~----------G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
+.+.|++|...++.+.+.-|....... |.. ..... +.+++|...+++++.+ ||.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~-------~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-------dP~- 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGG-------VLLELSQFHSISDAKQMIQEAITKFEEALLI-------DPK- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------CTT-
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHH-------HHHHhcccchhhhhHhHHHHHHHHHHHHHHh-------CcC-
Confidence 457799999999999988664333211 111 22222 3377999999999997 332
Q ss_pred HHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAAN-----------QFSEAAAVAHSLFCM 736 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G-----------~~~eAl~~l~~aL~~ 736 (924)
...+++++|.++..+| ++++|++++++++++
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5688999999998875 899999999999885
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.89 E-value=1.6 Score=47.99 Aligned_cols=173 Identities=11% Similarity=-0.075 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccC
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVT 699 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~ 699 (924)
.++...+...+..+....+..++|++.++.++..-|. ....|..+- ......| ++.++..++..++...+
T Consensus 50 ~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~----~iL~~l~~~l~eEL~~~~~~L~~nP--- 120 (349)
T 3q7a_A 50 SEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPA--HYTVWQYRF----SLLTSLNKSLEDELRLMNEFAVQNL--- 120 (349)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHTTCCHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch--hHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHhCC---
Confidence 3444555565555566666778999999998877553 223455441 2223466 59999999999988533
Q ss_pred CCCcchHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChh--------hhHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAA-N-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAV--------LGIPY 769 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~-G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~--------~Al~~ 769 (924)
. ...+++.++.++... | +++++++.++.++. . ......++..++.+....|.++ +++..
T Consensus 121 ----K-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~-----~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 121 ----K-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL-----P-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp ----C-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS-----S-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ----C-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-----h-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 2 467888889998888 8 99999999998875 2 2334667777888887777777 67777
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHhHH
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPN-----HAKMASNLIQQALPLI 819 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~-----~~~~Al~lLe~aLp~v 819 (924)
+.+++..-- .-..|....+.+...+|.. -++++++.+++++..-
T Consensus 190 ~~k~I~~dp------~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 190 CNEMLRVDG------RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHHHHCT------TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCC------CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 777666421 1124556667777667752 1367888877777653
No 214
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.34 Score=55.01 Aligned_cols=142 Identities=17% Similarity=0.057 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHH
Q 002424 728 AVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAK 806 (924)
Q Consensus 728 ~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~ 806 (924)
+.+.+.+..+.+.. ......+++..+|..|...|+++.|+..+.+....+...+. .....+.+..+.+..|+. .
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~--~ 185 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQ--L 185 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCH--H
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccH--H
Confidence 44444444444311 22234568889999999999999999999998887754432 334555677777888988 9
Q ss_pred HHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 002424 807 MASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEELQVLEDHELAAEAFYL 880 (924)
Q Consensus 807 ~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f~~l~~~~~~~~vl~~ 880 (924)
.|...++.+-..+...|+...+++.....|..+++ .+++..|..++-.+...|...+......-+.|.
T Consensus 186 ~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~------~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~ 253 (429)
T 4b4t_R 186 YVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLA------VRNFKEAAKLLVDSLATFTSIELTSYESIATYA 253 (429)
T ss_dssp HHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGG------TSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHhccCCccchhhHHHHHHHH
Confidence 99999999999999999999999999999999998 899999999999999888877766655555443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.18 E-value=0.38 Score=46.45 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAAN---QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G---~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
..++.++.|+.+.... +..+|+.++++++.. ..+..+.+++..+|..|.+.|+|.+|+.++.++|++-
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4688999999999988 777999999998873 2244678899999999999999999999998888763
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.08 E-value=0.67 Score=54.61 Aligned_cols=152 Identities=11% Similarity=-0.108 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHccC----------HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhh
Q 002424 626 LAHVKLIQHLAVFKG----------YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGV 693 (924)
Q Consensus 626 ~a~~~La~~~a~~G~----------y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~ 693 (924)
.+....+.++...|+ |++|++.++.+.+..|. ...+|.-+- ......| +|.+|.+.+.+++.
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~----w~l~~l~~~~~~~el~~~~k~l~ 137 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRC----WLLSRLPEPNWARELELCARFLE 137 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHHHcccccHHHHHHHHHHHHh
Confidence 566666777777777 99999999999987663 333454441 2223567 78999999999999
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc------------
Q 002424 694 MASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS------------ 760 (924)
Q Consensus 694 l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~------------ 760 (924)
+ |+. -..++..++.++...| .+++|++.++++++. ......++..++.++...
T Consensus 138 ~-------d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 138 A-------DER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp H-------CTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred h-------ccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccc
Confidence 6 333 4788999999999999 999999999988752 233456777788877664
Q ss_pred --CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 761 --GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 761 --G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
+.+++|+..+.+|+.+.-. + ..+...++.++...|..
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~--~----~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPN--D----QSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS--C----SHHHHHHHHHHSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhCCC--C----ccHHHHHHHHHhcCCCc
Confidence 4457777777777766421 1 24556667776666654
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.97 E-value=1 Score=54.47 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
..++..|++++|.+++..+ . + ...+..+|++.+..|+++.|.+++.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~-------~--~----~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE-------S--A----EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC-------C--C----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh-------C--c----HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5667788888887654322 1 2 255677888888888888888888764
No 218
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.88 E-value=6.6 Score=42.76 Aligned_cols=161 Identities=8% Similarity=-0.048 Sum_probs=106.0
Q ss_pred HHHccCHH-HHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHc--------CCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 635 LAVFKGYK-EAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHR--------GHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 635 ~a~~G~y~-eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~--------G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
....|+|+ +|+...+.++..-|.. ..+|..+-.+. ..+.. ..+.++..++..++...+ .
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~--ytaWn~Rr~iL--~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-------K- 106 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDF--ATLWNCRREVL--QHLETEKSPEESAALVKAELGFLESCLRVNP-------K- 106 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHH--HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-------T-
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh--HHHHHHHHHHH--HHhcccccchhhhHHHHHHHHHHHHHHHhCC-------C-
Confidence 34567766 7888888887665432 23454331111 11111 127788889988887522 2
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCCh-hhhHHHHHHHHHHHHHhCC
Q 002424 706 KTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNA-VLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~-~~Al~~l~~AL~la~~~g~ 782 (924)
...++..++.++...| +++++++.++.++.. ......++..++.+....|.+ +.++..+.+++..-- .+
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N 178 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SN 178 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CC
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CC
Confidence 4678999999999999 489999999999873 233467888889999999994 899999988886531 11
Q ss_pred cHHHHHHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHhHH
Q 002424 783 DLLKASATLTLAELWLSFGP------------NHAKMASNLIQQALPLI 819 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~------------~~~~~Al~lLe~aLp~v 819 (924)
..|....+.+...++. ..++++++.+.+++...
T Consensus 179 ----~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 179 ----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp ----HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 1344455555555521 12378888888887653
No 219
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.87 E-value=2.2 Score=46.88 Aligned_cols=153 Identities=9% Similarity=-0.042 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcc-CHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC-CHHHHHHHHHHHhhhhhccCCCCc
Q 002424 626 LAHVKLIQHLAVFK-GYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG-HLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 626 ~a~~~La~~~a~~G-~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G-~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
.+....+.++...| .++++++.++.++...|. ...+|.-+-.+ .....+ ++.++.+++.+++.. ||
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK--ny~aW~hR~wl---L~~l~~~~~~~EL~~~~k~L~~-------dp 156 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK--SYQVWHHRLLL---LDRISPQDPVSEIEYIHGSLLP-------DP 156 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC--CHHHHHHHHHH---HHHHCCSCCHHHHHHHHHHTSS-------CT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC--cHHHHHHHHHH---HHHhcCCChHHHHHHHHHHHHh-------CC
Confidence 56677777777888 599999999999987663 33345444111 111125 889999999999874 33
Q ss_pred chHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCC-------hhhhHH
Q 002424 704 DLKTEASLRHARTLLAANQFS--------EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGN-------AVLGIP 768 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~--------eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~-------~~~Al~ 768 (924)
. -..++..++.++...|.++ ++++.+++++.. ......++..++.+..+.|+ +++++.
T Consensus 157 k-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe 229 (349)
T 3q7a_A 157 K-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELI 229 (349)
T ss_dssp T-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 2 4688999999999999888 899988888763 23446788899999988887 466677
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCC
Q 002424 769 YALASLSFCQLLNLDLLKASATLTLAELWLSFGPN 803 (924)
Q Consensus 769 ~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~ 803 (924)
.+.+++.+.- + -..+...+..++...|..
T Consensus 230 ~~~~aI~~~P--~----n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 230 YILKSIHLIP--H----NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHCT--T----CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCC--C----CHHHHHHHHHHHHhcCCC
Confidence 7766665531 1 123444556666666654
No 220
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.69 E-value=5.8 Score=42.75 Aligned_cols=123 Identities=9% Similarity=-0.031 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..+..++.-+..+++|++|+++|.... ...+..|++..|-++..-+.......+ .+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga--------------------~~ll~~~Q~~sa~DLa~llvev~~~~~--~~~- 90 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA--------------------LSFLKAKQGGSGTDLIFYLLEVYDLAE--VKV- 90 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------HHHHHTTCHHHHHHHHHHHHHHHHHTT--CCC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--------------------HHHHHCCCcchHHHHHHHHHHHHHHcC--CCC-
Confidence 444445555555555555555544433 333455666666665555544433322 111
Q ss_pred HHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHhcCChhhhHHHHH
Q 002424 706 KTEASLRHARTLLAANQFS-EAAAVAHSLFCMCYKFNL-QVENASVLLLLAEIHKKSGNAVLGIPYAL 771 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~-eAl~~l~~aL~~~~~~gd-~~~~a~al~~la~i~~~~G~~~~Al~~l~ 771 (924)
..+...+++.+......-+ +=.+.+++++..+.+.|+ ..|....+..+|..+.+.|++..|..++.
T Consensus 91 ~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 91 DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1233444444443322211 125778888888887766 68888999999999999999999998885
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.47 E-value=2.4 Score=45.21 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc-----CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Q 002424 724 SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS-----GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWL 798 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~-----G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~ 798 (924)
.+|...+++++++ ........++..+|.+|... |++++|..++.+|+++.-..+. .+....|+.++
T Consensus 180 ~~A~a~lerAleL----DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i-----d~~v~YA~~l~ 250 (301)
T 3u64_A 180 HAAVMMLERACDL----WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP-----DHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHH----CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc-----hHHHHHHHHHH
Confidence 4555556666553 55556777899999999995 9999999999999999753223 45566777776
Q ss_pred H-cCCChHHHHHHHHHHHHhHH
Q 002424 799 S-FGPNHAKMASNLIQQALPLI 819 (924)
Q Consensus 799 ~-lG~~~~~~Al~lLe~aLp~v 819 (924)
. .|+. ++|.++++++|..-
T Consensus 251 ~~~gd~--~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 251 IPLNNR--AGFDEALDRALAID 270 (301)
T ss_dssp TTTTCH--HHHHHHHHHHHHCC
T ss_pred HhcCCH--HHHHHHHHHHHcCC
Confidence 6 4887 99999999997643
No 222
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.29 E-value=9.5 Score=41.49 Aligned_cols=154 Identities=10% Similarity=-0.114 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcC--CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHH
Q 002424 641 YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRG--HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLL 718 (924)
Q Consensus 641 y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G--~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~ 718 (924)
+++++..++.+....|. ...+|.-+- ......| +|.++..++.+++.+ ||. -..++..++.++.
T Consensus 90 l~~EL~~~~~~L~~~PK--ny~aW~hR~----wlL~~l~~~~~~~EL~~~~k~l~~-------dpr-Ny~AW~~R~~vl~ 155 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK--SYGTWHHRC----WLLSRLPEPNWARELELCARFLEA-------DER-NFHCWDYRRFVAA 155 (331)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHH----HHHHHCSSCCHHHHHHHHHHHHHH-------CTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHH----HHHhccCcccHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHH
Confidence 78899999988877653 333454431 1112345 599999999999985 332 4788999999999
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc--------------CChhhhHHHHHHHHHHHHHhCCc
Q 002424 719 AANQ-FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKS--------------GNAVLGIPYALASLSFCQLLNLD 783 (924)
Q Consensus 719 ~~G~-~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~--------------G~~~~Al~~l~~AL~la~~~g~~ 783 (924)
..|. ++++++.+..++.. ......++..++.+.... +.+.+++..+.+++.+.-. +.
T Consensus 156 ~l~~~~~eel~~~~~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~--d~ 227 (331)
T 3dss_A 156 QAAVAPAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQ 227 (331)
T ss_dssp HTTCCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT--CH
T ss_pred HhCcCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC--CH
Confidence 9999 69999999998873 223355666666666655 4467788888888766421 11
Q ss_pred HHHHHHHHHHHHHHH-HcCCC--------hHHHHHHHHHHHHhHHH
Q 002424 784 LLKASATLTLAELWL-SFGPN--------HAKMASNLIQQALPLIL 820 (924)
Q Consensus 784 ~~~A~al~~La~l~~-~lG~~--------~~~~Al~lLe~aLp~vl 820 (924)
.+...+..++. ..|.. ..+++++.+++++..--
T Consensus 228 ----SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 228 ----SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ----HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 22222222222 23421 23778887777776643
No 223
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.17 Score=58.24 Aligned_cols=197 Identities=13% Similarity=0.025 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH---cccchhHHHHHHHHHHHHHhcCChhh----------hHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLF--CMCYK---FNLQVENASVLLLLAEIHKKSGNAVL----------GIPY 769 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL--~~~~~---~gd~~~~a~al~~la~i~~~~G~~~~----------Al~~ 769 (924)
......+.....++..++|++|.++...+. ..... .......++++.-.+.+|...|+... -++.
T Consensus 134 ~~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~ 213 (523)
T 4b4t_S 134 INCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST 213 (523)
T ss_dssp ---------------------------------------------------------------------CHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH
Confidence 344555566666788999999999887665 22221 12223456677766777777776543 2556
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCC
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQ 849 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g 849 (924)
+..++..|.-.++....|..+..|-..+++.+.. ++|..++..+- ......+-.+.++.++.+||++.. .+
T Consensus 214 Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y--~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~------q~ 284 (523)
T 4b4t_S 214 MMKFLKIASLKHDNETKAMLINLILRDFLNNGEV--DSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAI------QL 284 (523)
T ss_dssp HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHH------TT
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcH--HHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHH------hc
Confidence 7788888888888889999999999999999998 99999999883 112234667789999999999999 89
Q ss_pred ChHHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHHHHhhhc
Q 002424 850 NPEAVLDPLRQASEELQVLE-DHELAAEAFYLIAIVFDKLGRLAEREE--------AAALFKEYVLALEN 910 (924)
Q Consensus 850 ~~~~Al~~L~~A~~~f~~l~-~~~~~~~vl~~lA~l~~~lGd~~~r~~--------aa~~f~~l~~~~~~ 910 (924)
++.+|.++|.+|+...-.-. ...-...++-.+-.+---+|+.+.+.- +..-|-.+..++.+
T Consensus 285 ~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~ 354 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKL 354 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHc
Confidence 99999999999975331111 222223333333333334566554332 33445555555544
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=91.63 E-value=2.1 Score=49.51 Aligned_cols=89 Identities=8% Similarity=0.000 Sum_probs=46.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
..+...|++++|..+++++... .+ .|. ..+...+...+.+.|+.++|.++++++... |-. ........
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~--g~---~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----G~~-Pd~~ty~~ 180 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAF--GI---QPR--LRSYGPALFGFCRKGDADKAYEVDAHMVES----EVV-PEEPELAA 180 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT--TC---CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCC-CCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHc--CC---CCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhc----CCC-CCHHHHHH
Confidence 3445566666666666666541 11 111 234445555556666666666666665441 221 12223344
Q ss_pred HHHHHHhcCChhhhHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALAS 773 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~A 773 (924)
+-..+.+.|+.++|+..+.+-
T Consensus 181 Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHH
Confidence 444556666666666665543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.36 E-value=0.55 Score=41.12 Aligned_cols=66 Identities=18% Similarity=0.046 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 707 TEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
++++...|.++...++ .++|...+++++.. .....++++.+|.++...|+|.+|+..+.+.+...-
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5778888888877776 79999999999984 344578899999999999999999999998876543
No 226
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.13 E-value=1.6 Score=51.25 Aligned_cols=157 Identities=8% Similarity=-0.080 Sum_probs=110.1
Q ss_pred HccC-HHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCC----------HHHHHHHHHHHhhhhhccCCCCcch
Q 002424 637 VFKG-YKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGH----------LKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 637 ~~G~-y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~----------~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
..|+ .++|++.++.+...-|.. ..+|..+- ......|+ +.+|.+.+.+++...+ .
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~--~taW~~R~----~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-------K- 105 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDF--ATLWNCRR----EVLQHLETEKSPEESAALVKAELGFLESCLRVNP-------K- 105 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTC--HHHHHHHH----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-------T-
T ss_pred HcCCCCHHHHHHHHHHHHHCchh--HHHHHHHH----HHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-------C-
Confidence 4455 467788888888775532 23454431 12223344 9999999999988632 2
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC-ChhhhHHHHHHHHHHHHHhCC
Q 002424 706 KTEASLRHARTLLAAN--QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG-NAVLGIPYALASLSFCQLLNL 782 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G--~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G-~~~~Al~~l~~AL~la~~~g~ 782 (924)
-..++..++.++...| ++++|++.++++++. | .....++..++.+....| .+++++.++.+++..--
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-----d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---- 175 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----D-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---- 175 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----C-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC----
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh-----c-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC----
Confidence 4688999999999999 779999999999984 2 234778899999999999 88889999888776431
Q ss_pred cHHHHHHHHHHHHHHHHcCC------------ChHHHHHHHHHHHHhHH
Q 002424 783 DLLKASATLTLAELWLSFGP------------NHAKMASNLIQQALPLI 819 (924)
Q Consensus 783 ~~~~A~al~~La~l~~~lG~------------~~~~~Al~lLe~aLp~v 819 (924)
.-..|....+.++..++. ..+++|++.+++++..-
T Consensus 176 --~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 176 --SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp --CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred --CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence 112455566666665421 13488898888887654
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.28 E-value=0.83 Score=40.42 Aligned_cols=69 Identities=14% Similarity=-0.037 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 748 SVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 748 ~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
.--+.+|.++...|++..|...+.+|+....... .....+.++..||.++..+|.. +.|+.++++++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~--~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL--DKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH--HHHHHHHHHHHhc
Confidence 3446789999999999999999999998875432 1334567788999999999998 9999999999765
No 228
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.10 E-value=23 Score=38.08 Aligned_cols=181 Identities=10% Similarity=0.020 Sum_probs=122.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 002424 715 RTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLA 794 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La 794 (924)
+-.+..|+|=||..+++.......+.+.....+..+..-|..+.+.|+...|-.++.--++.-.+.+.+.... .+.+|.
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~-~~~rl~ 99 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDI-SVARLV 99 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHH-HHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Confidence 3346788888998888877665555555555567788888888899999999888777777777777766544 445577
Q ss_pred HHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH------------HH
Q 002424 795 ELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR------------QA 861 (924)
Q Consensus 795 ~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~------------~A 861 (924)
.+...+...+ ..=.+.+++++-+....|+ ..+--..+..+|..+.. .+++.+|..++- -=
T Consensus 100 ~l~~~~p~~~-~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~------e~~~~~A~~H~i~~~~~s~~~~a~~l 172 (312)
T 2wpv_A 100 RLIAELDPSE-PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLE------GDFVYEAERYFMLGTHDSMIKYVDLL 172 (312)
T ss_dssp HHHTTCCTTC-TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHH------TTCHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHCCCCC-chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhh------cCCHHHHHHHHHhCCCccHHHHHHHH
Confidence 8776655431 1236788888888876644 44445667788888888 677777777662 11
Q ss_pred HHHHHhh--cCHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHH
Q 002424 862 SEELQVL--EDHELAAEAFYLIAI-VFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 862 ~~~f~~l--~~~~~~~~vl~~lA~-l~~~lGd~~~r~~aa~~f~~l 904 (924)
.+++.+. +.+ .+.+.+...|. -|..+|+...|+.+...|.+-
T Consensus 173 ~~w~~~~~~~~~-~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 173 WDWLCQVDDIED-STVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHTTCCCH-HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333332 443 45566655554 456889999988887777654
No 229
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.27 E-value=1.5 Score=49.65 Aligned_cols=98 Identities=15% Similarity=-0.091 Sum_probs=63.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
.+...|++..|..++.++....... ....+..+...++.+..||+..+...++++.......+++....+.....
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~~~~~~-----~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLSKAIST-----GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHTCC-----CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 3445555555555555555432211 22667777777777777777777777777776666666666666666667
Q ss_pred HHHHHhcCChhhhHHHHHHHHHH
Q 002424 754 AEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 754 a~i~~~~G~~~~Al~~l~~AL~l 776 (924)
|.++...++|..|..++.++..-
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 77777777777777777665543
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.43 E-value=1.4 Score=38.44 Aligned_cols=48 Identities=13% Similarity=-0.037 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 681 LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 681 ~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
..+|..++++++.+ ||. ...++..+|..+...|+|.+|++.++++++.
T Consensus 25 ~~~A~~~l~~AL~~-------dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQL-------EPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHH-------CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH-------CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 79999999999997 333 5688999999999999999999999999873
No 231
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=87.14 E-value=4.4 Score=48.77 Aligned_cols=185 Identities=16% Similarity=0.031 Sum_probs=104.1
Q ss_pred HHHHHHccCHHHHHH-HHHHHHHHhhccC-chHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHH
Q 002424 632 IQHLAVFKGYKEAFS-ALKIAEEKFLSVS-KSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEA 709 (924)
Q Consensus 632 a~~~a~~G~y~eA~~-~L~~a~~~f~~~~-~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a 709 (924)
.......|+|++|.. .+. ... ......+. ...-..|.+++|.+..+ |+...
T Consensus 606 ~~~~~~~~~~~~a~~~~l~-------~i~~~~~~~~~~-----~~l~~~~~~~~a~~~~~------------~~~~~--- 658 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLP-------NVEGKDSLTKIA-----RFLEGQEYYEEALNISP------------DQDQK--- 658 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGG-------GCCCHHHHHHHH-----HHHHHTTCHHHHHHHCC------------CHHHH---
T ss_pred HhHHHHhCCHHHHHHHHHh-------cCCchHHHHHHH-----HHHHhCCChHHheecCC------------Ccchh---
Confidence 555556788888866 441 122 11111111 23346777777764331 43222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHH
Q 002424 710 SLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASA 789 (924)
Q Consensus 710 ~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~a 789 (924)
-.+.+..|++++|++.+... .+ -..+..+|+...+.|+++.|...+.++-....
T Consensus 659 ----f~~~l~~~~~~~A~~~~~~~-------~~----~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~----------- 712 (814)
T 3mkq_A 659 ----FELALKVGQLTLARDLLTDE-------SA----EMKWRALGDASLQRFNFKLAIEAFTNAHDLES----------- 712 (814)
T ss_dssp ----HHHHHHHTCHHHHHHHHTTC-------CC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH-----------
T ss_pred ----eehhhhcCCHHHHHHHHHhh-------Cc----HhHHHHHHHHHHHcCCHHHHHHHHHHccChhh-----------
Confidence 23456789999998876532 11 35778899999999999999988876644432
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHH------HHHH
Q 002424 790 TLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLR------QASE 863 (924)
Q Consensus 790 l~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~------~A~~ 863 (924)
+..++...|.. +. +..+.......|+......++. . .|++++|++.+. +|+.
T Consensus 713 ---l~~l~~~~~~~--~~----~~~~~~~a~~~~~~~~A~~~~~-------~------~g~~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 713 ---LFLLHSSFNNK--EG----LVTLAKDAETTGKFNLAFNAYW-------I------AGDIQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp ---HHHHHHHTTCH--HH----HHHHHHHHHHTTCHHHHHHHHH-------H------HTCHHHHHHHHHHTTCHHHHHH
T ss_pred ---hHHHHHHcCCH--HH----HHHHHHHHHHcCchHHHHHHHH-------H------cCCHHHHHHHHHHcCChHHHHH
Confidence 44445557765 33 2333444455555544333322 2 356666666554 5666
Q ss_pred HHHhhcCHH-HHHHHHHHHHHHHHhcCCH
Q 002424 864 ELQVLEDHE-LAAEAFYLIAIVFDKLGRL 891 (924)
Q Consensus 864 ~f~~l~~~~-~~~~vl~~lA~l~~~lGd~ 891 (924)
.+++.+... ...++...-+.-....|+.
T Consensus 771 lA~~~~~~~~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 771 LGSTYGLGDNEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHhccch
Confidence 666655433 2455555555555555553
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.06 E-value=9.3 Score=42.41 Aligned_cols=125 Identities=15% Similarity=-0.007 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchH
Q 002424 627 AHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLK 706 (924)
Q Consensus 627 a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~ 706 (924)
.++.-|......|+.++|.+.+++|+..|+..--.. +..+.|..+.. .++.. ..
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~-------------~~~~~w~~~~r--~~l~~-----------~~ 170 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-------------LRDFQFVEPFA--TALVE-----------DK 170 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-------------GTTSTTHHHHH--HHHHH-----------HH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC-------------CCchhHHHHHH--HHHHH-----------HH
Confidence 344445555567899999999999988875321110 01122222211 11111 13
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH-HHHhCCc
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF-CQLLNLD 783 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l-a~~~g~~ 783 (924)
..+...++..+.+.|++.+|+..+..++. .++..+ +++..+-.++.++|+...|+..+.++-.. ..+.|..
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~-----~~P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTF-----EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555677778899999999988888766 333332 13334444578999999999888776653 3555543
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=83.49 E-value=6.9 Score=37.55 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhhhhhccCCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 680 HLKLAQKVCDELGVMASSVTGVD-MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D-~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
+..++..+++.+... | |....++++.+|..+.+.|+|++|+++++.+++.
T Consensus 50 ~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 50 DIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 677888888888773 3 5567899999999999999999999999999984
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.80 E-value=26 Score=34.35 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=40.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 672 HERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 672 ~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
|..++..|+++.|.++++.+. ....+..+|+.-+..|+++-|.+++.++
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~-------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN-------------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHhC-------------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 478899999999999877652 2356888999999999999999998865
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.39 E-value=69 Score=34.65 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=111.1
Q ss_pred HHHcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHH
Q 002424 717 LLAANQF---SEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTL 793 (924)
Q Consensus 717 l~~~G~~---~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~L 793 (924)
.+..|+| =||..+++.........+.....+.++..-|..+.+.|+...|-++..--++.-.+.+.+.-. ..+.+|
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~rL 100 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGKL 100 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHH
Confidence 3567777 777777776655444444444456667777777888888888877776666666666554433 455668
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhHHHhhCC-HHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHH------------HH
Q 002424 794 AELWLSFGPNHAKMASNLIQQALPLILGHGG-LELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPL------------RQ 860 (924)
Q Consensus 794 a~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd-~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L------------~~ 860 (924)
..+...+...+.++ ..++.+++-+...+|+ ...--..+..+|..+.. .+++.+|..++ +-
T Consensus 101 ~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~------e~~~~~Ae~H~ilg~~~s~~~~a~m 173 (336)
T 3lpz_A 101 LGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE------EGEFEAAEKHLVLGTKESPEVLARM 173 (336)
T ss_dssp HHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH------TTCHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc------cCCHHHHHHHHHhcCCchHHHHHHH
Confidence 88877776543233 6678888888876542 22333445567777777 45555554443 11
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Q 002424 861 ASEELQVLEDHELAAEAFYLIAIV-FDKLGRLAEREEAAALFKEYV 905 (924)
Q Consensus 861 A~~~f~~l~~~~~~~~vl~~lA~l-~~~lGd~~~r~~aa~~f~~l~ 905 (924)
=.+++.+.+ ..+.+.+...|.+ |..+|+...|+.+...|...-
T Consensus 174 L~ew~~~~~--~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 174 EYEWYKQDE--SHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHTSC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 122333222 3455666666554 578899999998888887653
No 236
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.36 E-value=32 Score=37.28 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=71.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
.|++..++|++|.+++. .-+..++..|++..|.++..-+++...+.+..... .....
T Consensus 43 ~Ry~~~k~y~eAidLL~----------------------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~-~~~~r 99 (336)
T 3lpz_A 43 ARYSKQGNWAAAVDILA----------------------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDG-ASRGK 99 (336)
T ss_dssp HHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCH-HHHHH
T ss_pred HHHHhhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHH
Confidence 45666677776665444 34445567788888888777777666665544433 34444
Q ss_pred HHHHHHhcCChhhh-HHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLG-IPYALASLSFCQLLN-LDLLKASATLTLAELWLSFGPNHAKMASNLI 812 (924)
Q Consensus 753 la~i~~~~G~~~~A-l~~l~~AL~la~~~g-~~~~~A~al~~La~l~~~lG~~~~~~Al~lL 812 (924)
+..++.....-+.. ...+.+|+..+.++| .+.+.......+|.++..-|.. .+|..++
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~--~~Ae~H~ 159 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF--EAAEKHL 159 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH--HHHHHHH
Confidence 55555555433222 446667888887765 3555556666788888777765 7777765
No 237
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=80.09 E-value=28 Score=39.71 Aligned_cols=117 Identities=12% Similarity=-0.030 Sum_probs=51.9
Q ss_pred HcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Q 002424 677 HRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAAN-QFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAE 755 (924)
Q Consensus 677 ~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G-~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~ 755 (924)
+.|+.+.|+.++.++ .. +. ....+....+.+-...| +.+.|...++.++..+. +. ...++..+.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~-------~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~---~~---~~~~~~yid 362 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EG-------VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP---DS---TLLKEEFFL 362 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SC-------CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT---TC---HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CC-------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC---CC---HHHHHHHHH
Confidence 344566666666655 21 10 01223333344443333 46666666666655321 11 112222344
Q ss_pred HHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 756 IHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 756 i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
.....|+..+|...+.++.. ...........-...|.. +.++.+++++++.+.
T Consensus 363 ~e~~~~~~~~aR~l~er~~k----------~~~lw~~~~~fE~~~G~~--~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLEK----------TSRMWDSMIEYEFMVGSM--ELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSCC----------BHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHhc
Confidence 44555666666555555410 011112222223334655 666666666666544
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.74 E-value=4.6 Score=37.47 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFSE---AAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~e---Al~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
...+.++.|+.+....+... ++.++++++.. +.+.....++..+|..|.+.|+|.+|+.++...|.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 46888999999998888877 77777766551 324567889999999999999999999998877765
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=77.58 E-value=8.3 Score=41.12 Aligned_cols=87 Identities=10% Similarity=-0.056 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcc-hHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMD-LKTEASLRHARTLLAA-----NQFSEAAAVAHSLFCMCYKFNLQVENASVLLLL 753 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~-~~a~a~~~~a~ll~~~-----G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~l 753 (924)
....|...+++++.+ ||. ....++.-+|.++... |+.+.|.+++++++++. +.+.+.+....
T Consensus 178 ~l~~A~a~lerAleL-------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~~id~~v~Y 245 (301)
T 3u64_A 178 TVHAAVMMLERACDL-------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHH-------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTTCSHHHHHH
T ss_pred hHHHHHHHHHHHHHh-------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCCCchHHHHH
Confidence 357788888899887 433 2456788888888885 99999999999999963 23347778888
Q ss_pred HHHHHhc-CChhhhHHHHHHHHHHHH
Q 002424 754 AEIHKKS-GNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 754 a~i~~~~-G~~~~Al~~l~~AL~la~ 778 (924)
|+.+... |+++.|..++.+|+..--
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 9988884 999999999999988654
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.20 E-value=29 Score=33.29 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHcccchhH--HHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcC
Q 002424 724 SEAAAVAHSLFCMCYKFNLQVEN--ASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFG 801 (924)
Q Consensus 724 ~eAl~~l~~aL~~~~~~gd~~~~--a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG 801 (924)
++-++.++++.....-.....++ +..++.-|.. ...+++++|...+..|+.+++ .. |.+....|.-..+.|
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK----kF--AKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK----KF--AFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT----TB--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH----HH--HHHHHHHHHHHHHcc
Confidence 44445555555432222233333 5667777755 577999999999999999733 33 777777777777888
Q ss_pred CChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 802 PNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 802 ~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
.. .+|+.+|..++... --+...-..|..
T Consensus 109 nl--~kARkILg~AiG~~--~k~~~~le~a~~ 136 (161)
T 4h7y_A 109 NV--KKSKQLLQKAVERG--AVPLEMLEIALR 136 (161)
T ss_dssp CH--HHHHHHHHHHHHTT--CBCHHHHHHHHH
T ss_pred cH--HHHHHHHHHHhccC--CCcHHHHHHHHH
Confidence 87 99999999998843 223444444433
No 241
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.74 E-value=24 Score=40.65 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=63.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 699 TGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
-..|.++.+...+.+.+.++..+.|++|..+++...- -.........++-+.-+|.|+.-.++|.+|..++.+|+..|-
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 4458889999999999999999999999999997731 011112233477889999999999999999999999998774
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.88 E-value=65 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.4
Q ss_pred HccCHHHHHHHHHHHHHHhhccCchHHHH-HHHhhHHHHHHHcCCHHHHHHHHHHHhh
Q 002424 637 VFKGYKEAFSALKIAEEKFLSVSKSRILL-LKLQLLHERSLHRGHLKLAQKVCDELGV 693 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~~~~~~~~-l~l~l~~~~al~~G~~~~A~~~l~~ll~ 693 (924)
..|+++.|.+..+.. .+...|. +. ..++..|++.-|+.++.++..
T Consensus 17 ~lg~l~~A~e~a~~l-------~~~~~Wk~Lg-----~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-------NDSITWERLI-----QEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HTTCHHHHHHHHHHH-------CCHHHHHHHH-----HHHHHTTCHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHh-------CCHHHHHHHH-----HHHHHcCChHHHHHHHHHhCC
Confidence 579999999887653 2223343 23 789999999999999998754
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=70.67 E-value=16 Score=34.61 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFS---EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~---eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
...+.++.++.+....+.+ +++.++++++. ..+.....++..+|.-|.+.|+|.+|+.++...|++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-----~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-----HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 5678889999998888666 46666665554 344467889999999999999999999888766554
No 244
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=69.28 E-value=15 Score=35.52 Aligned_cols=80 Identities=8% Similarity=-0.047 Sum_probs=54.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCC--CCcchHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTG--VDMDLKTEAS-LRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASV 749 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~--~D~~~~a~a~-~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~a 749 (924)
...++.|+|-+|.+.++.+-.-.. +. .....+..+. ...|.++.++|+...|..++.+++...........-+++
T Consensus 40 i~lFn~g~yfeaHEvLEe~W~~~~--~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv 117 (161)
T 2ijq_A 40 VRLYNSGEFHESHDCFEDEWYNYG--RGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDL 117 (161)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTTC--SSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCH
T ss_pred HHHHhCCCchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCH
Confidence 567788999999999998876321 11 0123345566 667888899999999999999999876655444333333
Q ss_pred HHHHH
Q 002424 750 LLLLA 754 (924)
Q Consensus 750 l~~la 754 (924)
-.++.
T Consensus 118 ~~L~~ 122 (161)
T 2ijq_A 118 LDVRT 122 (161)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=68.06 E-value=13 Score=35.73 Aligned_cols=90 Identities=13% Similarity=-0.000 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcC
Q 002424 682 KLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSG 761 (924)
Q Consensus 682 ~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G 761 (924)
+.-++.|+++.+..+......-..-+..+.+-+.. ...+|.++|.+.++.++..++.. +.+++..|+...+.|
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF------AKiwi~~AqFEiRqg 108 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF------AFVHISFAQFELSQG 108 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH------HHHHHHHHHHHHHcc
Confidence 55556666665533221111112233444555554 56689999999999998874433 899999999999999
Q ss_pred ChhhhHHHHHHHHHHHH
Q 002424 762 NAVLGIPYALASLSFCQ 778 (924)
Q Consensus 762 ~~~~Al~~l~~AL~la~ 778 (924)
+..+|...+.+|+.++-
T Consensus 109 nl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 109 NVKKSKQLLQKAVERGA 125 (161)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHhccCC
Confidence 99999999999988763
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=65.19 E-value=26 Score=38.69 Aligned_cols=107 Identities=12% Similarity=-0.065 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----cccc-----------hhHHHHHHHHHHHHHhcCChhhhHHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYK-----FNLQ-----------VENASVLLLLAEIHKKSGNAVLGIPY 769 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~-----~gd~-----------~~~a~al~~la~i~~~~G~~~~Al~~ 769 (924)
.++.....+.-....|+.++|.+.+++++.+.+. ..+. .....++..++..+...|++..|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444445555555677888888888877766541 0011 11234677888999999999999998
Q ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHH
Q 002424 770 ALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLIL 820 (924)
Q Consensus 770 l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl 820 (924)
+.+.+..- ++-+ .+...|-.++...|+. .+|++.|+++-....
T Consensus 194 l~~~~~~~-----P~~E-~~~~~lm~al~~~Gr~--~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 194 LEALTFEH-----PYRE-PLWTQLITAYYLSDRQ--SDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHHHHS-----TTCH-HHHHHHHHHHHTTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCH-HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 87765432 2222 2334466667789998 999999998876553
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=64.91 E-value=38 Score=31.30 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCCh---HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 002424 806 KMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNP---EAVLDPLRQASEELQVLEDHELAAEAFYLIA 882 (924)
Q Consensus 806 ~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~---~~Al~~L~~A~~~f~~l~~~~~~~~vl~~lA 882 (924)
..+++.+++.+ ..|. ....+.+.+|-|++. ...+ .+++..|+.-+.. +.|....+.+|.+|
T Consensus 18 ~~~~~~y~~e~----~~~~--~s~~~~F~yAw~Lv~------S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 18 LKFEKKFQSEK----AAGS--VSKSTQFEYAWCLVR------TRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHH----HHSC--CCHHHHHHHHHHHTT------SSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----ccCC--CcHHHHHHHHHHHHc------CCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHH
Confidence 44445555443 3455 344566777877877 3443 4577777765442 45889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH
Q 002424 883 IVFDKLGRLAEREEAAALFKEY 904 (924)
Q Consensus 883 ~l~~~lGd~~~r~~aa~~f~~l 904 (924)
..|-.+|+...+.++...+-+.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999988877766554
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=59.32 E-value=38 Score=31.59 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHH
Q 002424 706 KTEASLRHARTLLAANQFS---EAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSF 776 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~---eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~l 776 (924)
...+.++.|+.+....+.. +++.++++++. ..+.....++..+|..|.+.|+|.+|+.++...|.+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-----~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-----EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4578888898888887654 56677766655 335567889999999999999999999888766554
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=59.08 E-value=23 Score=42.86 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=49.4
Q ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002424 665 LLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSL 733 (924)
Q Consensus 665 ~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~a 733 (924)
++..|. .-.+.+|+|+.|..+..++...++ + .+.+++.++.+++.+|||+.|+-.++.+
T Consensus 339 LL~~Qa--~FLl~K~~~elAL~~Ak~AV~~aP-----s---eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQT--NFLLNRGDYELALGVSNTSTELAL-----D---SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHH--HHHHHTTCHHHHHHHHHHHHHHCS-----S---CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHH--HHHhccCcHHHHHHHHHHHHhcCc-----h---hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445554 455679999999999999988644 2 6999999999999999999999988865
No 250
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.01 E-value=1.1e+02 Score=33.81 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred HccCHHHHHHHHHHHHHHhhcc--C--------c--hHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcc
Q 002424 637 VFKGYKEAFSALKIAEEKFLSV--S--------K--SRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMD 704 (924)
Q Consensus 637 ~~G~y~eA~~~L~~a~~~f~~~--~--------~--~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~ 704 (924)
...++.+|++.|+.....+... . + .....+...+. ..++..|+..+|..+++.+.......++.|+.
T Consensus 88 ~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~-~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~ 166 (393)
T 4b4t_O 88 DSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIA-RTYLLKNDLVKARDLLDDLEKTLDKKDSIPLR 166 (393)
T ss_dssp HTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSH
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhhhccCCccHH
Confidence 4568999999998775543211 0 0 11233333443 67788999999999999999887777767777
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 002424 705 LKTEASLRHARTLLAANQFSEAAAVAHSLFCMCY 738 (924)
Q Consensus 705 ~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~ 738 (924)
..+......+.++.+.++|.++....-..+..+.
T Consensus 167 v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 167 ITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 7788888889999999999999888777776554
No 251
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=56.11 E-value=75 Score=39.75 Aligned_cols=106 Identities=9% Similarity=-0.069 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh-hccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhcc
Q 002424 620 SLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKF-LSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSV 698 (924)
Q Consensus 620 ~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f-~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~ 698 (924)
...+.-..+..|...++..|+.++|..++++..+.- .....+ ...++.+..-+...|++++|.++++++.. ..+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd---vvTYNtLI~Glck~G~~~eA~~Lf~eM~~--~G~ 196 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT---LDMYNAVMLGWARQGAFKELVYVLFMVKD--AGL 196 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTC
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC---HhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCC
Confidence 345667788999999999999999999998766431 111111 12223222566789999999999999977 322
Q ss_pred CCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 002424 699 TGVDMDLKTEASLRHARTLLAANQF-SEAAAVAHSLFC 735 (924)
Q Consensus 699 ~~~D~~~~a~a~~~~a~ll~~~G~~-~eAl~~l~~aL~ 735 (924)
.|+ ..+.+.+...+.+.|+. ++|.++++++..
T Consensus 197 ---~PD--vvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 197 ---TPD--LLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp ---CCC--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ---CCc--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 233 34455566677888984 788999998875
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=55.80 E-value=38 Score=31.59 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 680 HLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 680 ~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
+...+..+++.+..- ++...-++++.+|.-+.+.|+|++|+++++.+|+
T Consensus 58 d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 58 DERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444566666666542 4556889999999999999999999999999887
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.73 E-value=1.3e+02 Score=28.38 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002424 678 RGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFC 735 (924)
Q Consensus 678 ~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~ 735 (924)
..+..++..+++.+..- +|+..-++++.+|.-+.+.|+|++|+++++.+|+
T Consensus 55 ~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 55 VNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33445566666666552 4445889999999999999999999999999988
No 254
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=53.06 E-value=20 Score=31.26 Aligned_cols=67 Identities=9% Similarity=-0.140 Sum_probs=43.9
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ 743 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~ 743 (924)
...++.|+|-+|.+.++.+-.-.+ ++.....+..+....+.++.++|+. |..++.+++.........
T Consensus 9 ~~lfn~g~~~eaHEvlE~~W~~~~--~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~ 75 (94)
T 2cwy_A 9 LGLWRAGRYYEVHEVLEPYWLKAT--GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCP 75 (94)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSS
T ss_pred HHHHhCCChHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCc
Confidence 456677888888888887766321 1111223456666777778888888 888888887766655443
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=50.21 E-value=55 Score=34.29 Aligned_cols=120 Identities=13% Similarity=-0.097 Sum_probs=63.5
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHH
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHA 714 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a 714 (924)
+...|..++|++.+....+.-|.-.+.| . ..|....-.|+|..|...+..+..+ ||.....+....-
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R--~----~LfqLLcv~G~w~RA~~QL~~~a~l-------~p~~~~~a~~yr~ 73 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLR--S----SFIELLCIDGDFERADEQLMQSIKL-------FPEYLPGASQLRH 73 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHH--H----HHHHHHHHHTCHHHHHHHHHHHHHH-------CGGGHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHH--H----HHHHHHHhcCCHHHHHHHHHHHHHh-------CchhhHHHHHHHH
Confidence 4466788888888777665544322222 1 1124556788888888888888776 4444444322211
Q ss_pred HHHHHcCCHHHHHHHHHH-HHHHHH---HcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHH
Q 002424 715 RTLLAANQFSEAAAVAHS-LFCMCY---KFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFC 777 (924)
Q Consensus 715 ~ll~~~G~~~eAl~~l~~-aL~~~~---~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la 777 (924)
.+...+ .++ .+.--+ -.|. ...-...+..+......|+.+.|..+-.+|++.+
T Consensus 74 lI~aE~---------~R~~vfaG~~~P~~~g~-~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~a 130 (273)
T 1zbp_A 74 LVKAAQ---------ARKDFAQGAATAKVLGE-NEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 130 (273)
T ss_dssp HHHHHH---------HHHHHTTSCCCEECCCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHH---------HHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Confidence 111110 110 111000 0111 1223345666667777888888877777776664
No 256
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=49.77 E-value=1.7e+02 Score=33.09 Aligned_cols=129 Identities=9% Similarity=-0.070 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHH-cCCHHHHHHHHHHHhhhhhccCCCCc
Q 002424 625 ALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLH-RGHLKLAQKVCDELGVMASSVTGVDM 703 (924)
Q Consensus 625 ~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~-~G~~~~A~~~l~~ll~l~~~~~~~D~ 703 (924)
..+....+......|+.+.|..+++.| ..+.. ..+.|+-.. ...+. .++.+.|+.+++.++..++ .++
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~-~~~v~i~~A----~lE~~~~~d~~~ar~ife~al~~~~----~~~ 354 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL--GNEGV-GPHVFIYCA----FIEYYATGSRATPYNIFSSGLLKHP----DST 354 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCC-CHHHHHHHH----HHHHHHHCCSHHHHHHHHHHHHHCT----TCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCC-ChHHHHHHH----HHHHHHCCChHHHHHHHHHHHHHCC----CCH
Confidence 345555566666678899999999988 33432 233443221 12222 3379999999999988543 133
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 704 DLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 704 ~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
......+......|+.+.|...++.+.. ...++......-...|+.+.+...+.+++...+
T Consensus 355 ----~~~~~yid~e~~~~~~~~aR~l~er~~k----------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 355 ----LLKEEFFLFLLRIGDEENARALFKRLEK----------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHSCC----------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 2344457778889999999988887621 134444455555567888888888888777544
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=49.08 E-value=1.2e+02 Score=36.75 Aligned_cols=123 Identities=9% Similarity=-0.053 Sum_probs=79.2
Q ss_pred cCC-HHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH----cccc--------
Q 002424 678 RGH-LKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAA-NQFSEAAAVAHSLFCMCYK----FNLQ-------- 743 (924)
Q Consensus 678 ~G~-~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~-G~~~eAl~~l~~aL~~~~~----~gd~-------- 743 (924)
.|+ ++.|..+++++... ||............+.... .+--+|+..+.+.+..... ....
T Consensus 261 t~~~~~~a~~~le~L~~~-------~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK-------DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 445 57788899888763 5544332222222222122 2345677777777653211 0100
Q ss_pred hhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 002424 744 VENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQA 815 (924)
Q Consensus 744 ~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~a 815 (924)
......|..-|.....-|+++-|+..+.+|+.++= .+-.....|+++|..+|+. +.|+-.|+.|
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP------seF~tW~~La~vYi~l~d~--e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL------DSFESWYNLARCHIKKEEY--EKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHTTCH--HHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc------hhhHHHHHHHHHHHHhccH--HHHHHHHhcC
Confidence 11133566667777889999999999999988871 1236678899999999997 9999999887
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.06 E-value=4.8e+02 Score=32.24 Aligned_cols=158 Identities=10% Similarity=0.019 Sum_probs=91.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLL 752 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~ 752 (924)
...+..|+-.....++.-+.. . ..| ...-....+.-++..|+.+++-..++.+.. ..++..+.-+.+.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e---~--~~e---~vrR~aalgLGll~~g~~e~~~~li~~L~~----~~dp~vRygaa~a 565 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQE---T--QHG---NITRGLAVGLALINYGRQELADDLITKMLA----SDESLLRYGGAFT 565 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHH---C--SCH---HHHHHHHHHHHHHTTTCGGGGHHHHHHHHH----CSCHHHHHHHHHH
T ss_pred hhhcccCCHHHHHHHHHHHhc---c--CcH---HHHHHHHHHHHhhhCCChHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 556678887777666665543 1 112 111123334444567777766666664433 3455555667778
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHH
Q 002424 753 LAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAF 832 (924)
Q Consensus 753 la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~ 832 (924)
+|..|...|+...-..++ ..+.....+..+..|...||.+. +|.+ +.+.+ ++....+.++...|-.+-
T Consensus 566 lglAyaGTGn~~aIq~LL----~~~~~d~~d~VRraAViaLGlI~--~g~~--e~v~r----lv~~L~~~~d~~VR~gAa 633 (963)
T 4ady_A 566 IALAYAGTGNNSAVKRLL----HVAVSDSNDDVRRAAVIALGFVL--LRDY--TTVPR----IVQLLSKSHNAHVRCGTA 633 (963)
T ss_dssp HHHHTTTSCCHHHHHHHH----HHHHHCSCHHHHHHHHHHHHHHT--SSSC--SSHHH----HTTTGGGCSCHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHH----HHhccCCcHHHHHHHHHHHHhhc--cCCH--HHHHH----HHHHHHhcCCHHHHHHHH
Confidence 888888999863333243 33334444555566666677654 7776 43333 444555678888888888
Q ss_pred HHHHHhhhcCCCCCCCCChHHHHHHHHHH
Q 002424 833 IAEAKCLLSDPSFSVSQNPEAVLDPLRQA 861 (924)
Q Consensus 833 ~~LAr~~la~~~~~~~g~~~~Al~~L~~A 861 (924)
..||.+... .+ ..++++.|...
T Consensus 634 lALGli~aG------n~-~~~aid~L~~L 655 (963)
T 4ady_A 634 FALGIACAG------KG-LQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHTSS------SC-CHHHHHHHHHH
T ss_pred HHHHHhccC------CC-cHHHHHHHHHH
Confidence 888866543 22 24555555543
No 259
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=46.29 E-value=36 Score=29.69 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhC
Q 002424 712 RHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLN 781 (924)
Q Consensus 712 ~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g 781 (924)
..+..+...|+|-+|.+.+++.=..+........+.-+++..|..|.+.|+. |...+.+|+..-....
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~ 73 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLP 73 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCC
Confidence 4566677889999999999987553321111223344666777788889998 8888888888665443
No 260
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=41.97 E-value=2.4e+02 Score=28.00 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=71.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELW 797 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~ 797 (924)
++-.|.+.|+-++.++++- ||+.-.+|=|+..|.=-....+| .|+..+..|...+...|.+-.+ .-+.-|-++
T Consensus 25 iRGSDpDAAly~LaRml~~----GDp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE~~--i~Laqaviy 97 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEA----GDLASICRRLMVIGYEDIGLGNP-AAAARTVNAVLAAEKLGLPEAR--IPLADVVVD 97 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHTTGGGCH-HHHHHHHHHHHHHHHHCTTTTH--HHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 5666888899998888873 68888888888887766777776 7888889999999999997333 233344444
Q ss_pred HHcC-CChHHHHHHHHHHHHhHHHhhCC
Q 002424 798 LSFG-PNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 798 ~~lG-~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
+++- .. ..+...+..++..+++.+.
T Consensus 98 LA~aPKS--Ns~y~A~~~A~~~v~~~~~ 123 (204)
T 2r9g_A 98 LCLSPKS--NSAYMALDAALADIREGKA 123 (204)
T ss_dssp HHHSCCC--CHHHHHHHHHHHHHHTTCC
T ss_pred HHcCCcc--HHHHHHHHHHHHHHHhcCC
Confidence 4433 33 5677888888888887754
No 261
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=41.07 E-value=2.4e+02 Score=28.06 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=70.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 796 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 796 (924)
++-.|.+.|+-++.++++ .| |+.-.+|=|+..|.=-....+| .|+..+..|...+...|.+-.+ .-+.-+-+
T Consensus 18 iRGSDpDAAly~LaRMl~----~GEDp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE~~--i~Laqavi 90 (201)
T 3bge_A 18 VRGSAPDAALYWYARILT----AGGDPLYVARRLLAIASEDVGNADP-RAMQVALAAWDCFTRVGAYEGE--RAIAQAII 90 (201)
T ss_dssp HHTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHTTGGGCT-THHHHHHHHHHHHHHTCHHHHH--HHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHHCCcHHH--HHHHHHHH
Confidence 466688888888888876 24 7778888888777766667776 7888999999999999987443 34445555
Q ss_pred HHHcC-CChHHHHHHHHHHHHhHHHhhCC
Q 002424 797 WLSFG-PNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 797 ~~~lG-~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
++++- .. ..+...+..++..+.+.+.
T Consensus 91 yLA~aPKS--Ns~y~A~~~A~~~v~~~~~ 117 (201)
T 3bge_A 91 YLSVAPKS--NAVYTAFNTAKQQAKDLPD 117 (201)
T ss_dssp HHHHSCCC--CHHHHHHHHHHHHHHHSCC
T ss_pred HHHcCCcc--HHHHHHHHHHHHHHHhcCC
Confidence 55443 33 5677888888888887654
No 262
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.32 E-value=52 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002424 703 MDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM 736 (924)
Q Consensus 703 ~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~ 736 (924)
|...+...-++++.+++.|+|++|+++.+.+...
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999988654
No 263
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.08 E-value=61 Score=31.23 Aligned_cols=74 Identities=12% Similarity=-0.017 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--ccchhHHHHH-HHHHHHHHhcCChhhhHHHHHHHHHHHHHh
Q 002424 707 TEASLRHARTLLAANQFSEAAAVAHSLFCMCYKF--NLQVENASVL-LLLAEIHKKSGNAVLGIPYALASLSFCQLL 780 (924)
Q Consensus 707 a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~--gd~~~~a~al-~~la~i~~~~G~~~~Al~~l~~AL~la~~~ 780 (924)
..-.+..+..+...|+|-+|.+.++.+=..+... .....+.-++ +..|..|.+.|+..-|...+.+|+..-...
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 3445677778888899999999999764322111 0112334455 567778899999999999999998865443
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.35 E-value=89 Score=39.68 Aligned_cols=32 Identities=9% Similarity=-0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 002424 856 DPLRQASEELQVLEDHELAAEAFYLIAIVFDK 887 (924)
Q Consensus 856 ~~L~~A~~~f~~l~~~~~~~~vl~~lA~l~~~ 887 (924)
.|++--....-.-++.++.+.++|..+.-...
T Consensus 1021 ~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 1021 CWYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence 35666666667778888899999988876544
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=35.48 E-value=7.2e+02 Score=30.68 Aligned_cols=232 Identities=10% Similarity=-0.011 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcch
Q 002424 626 LAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDL 705 (924)
Q Consensus 626 ~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~ 705 (924)
.+...||.++...|+-+....++..+.+. ..+.-.+.+.+. .-.+..|+-..+..+++.+... .|+..
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalg---LGll~~g~~e~~~~li~~L~~~------~dp~v 558 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVG---LALINYGRQELADDLITKMLAS------DESLL 558 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHH---HHHHTTTCGGGGHHHHHHHHHC------SCHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHH---HHhhhCCChHHHHHHHHHHHhC------CCHHH
Confidence 34455676666777776666666655531 122111222222 2345788888888888877652 26777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHH
Q 002424 706 KTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLL 785 (924)
Q Consensus 706 ~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~ 785 (924)
+..+-+.++..+...|+... ++++|..|....+...+..+...+|.| ..|+++.+... +.+-.+.+++..
T Consensus 559 Rygaa~alglAyaGTGn~~a----Iq~LL~~~~~d~~d~VRraAViaLGlI--~~g~~e~v~rl----v~~L~~~~d~~V 628 (963)
T 4ady_A 559 RYGGAFTIALAYAGTGNNSA----VKRLLHVAVSDSNDDVRRAAVIALGFV--LLRDYTTVPRI----VQLLSKSHNAHV 628 (963)
T ss_dssp HHHHHHHHHHHTTTSCCHHH----HHHHHHHHHHCSCHHHHHHHHHHHHHH--TSSSCSSHHHH----TTTGGGCSCHHH
T ss_pred HHHHHHHHHHHhcCCCCHHH----HHHHHHHhccCCcHHHHHHHHHHHHhh--ccCCHHHHHHH----HHHHHhcCCHHH
Confidence 77777788888889998533 333344443333333333355555544 45555433322 233345677777
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHHH
Q 002424 786 KASATLTLAELWLSFGPNHAKMASNLIQQALPLILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEEL 865 (924)
Q Consensus 786 ~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~f 865 (924)
+-.+-..||.+. .|.+. .+|++.|... ..-.+...+-.|...||.+.....+ ....+...++++=...+
T Consensus 629 R~gAalALGli~--aGn~~-~~aid~L~~L----~~D~d~~Vrq~Ai~ALG~Ig~gtnn----a~~~rva~~l~~L~~~~ 697 (963)
T 4ady_A 629 RCGTAFALGIAC--AGKGL-QSAIDVLDPL----TKDPVDFVRQAAMIALSMILIQQTE----KLNPQVADINKNFLSVI 697 (963)
T ss_dssp HHHHHHHHHHHT--SSSCC-HHHHHHHHHH----HTCSSHHHHHHHHHHHHHHSTTCCT----TTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCc-HHHHHHHHHH----ccCCCHHHHHHHHHHHHHHhcCCcc----ccchHHHHHHHHHHHHH
Confidence 777777777665 44441 5777766665 4556777787888999977765321 11124555666644444
Q ss_pred H-hhcCHHHHHHHHHHHHHHHHhcCC
Q 002424 866 Q-VLEDHELAAEAFYLIAIVFDKLGR 890 (924)
Q Consensus 866 ~-~l~~~~~~~~vl~~lA~l~~~lGd 890 (924)
. +-+++...--+...+|.+|..-|.
T Consensus 698 ~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 698 TNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred hcccccHHHHHHHHHHHHHHhcCCCc
Confidence 3 355666677777778887765554
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=34.47 E-value=2.6e+02 Score=29.22 Aligned_cols=115 Identities=12% Similarity=-0.016 Sum_probs=73.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccc----hhHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQ----VENAS 748 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~----~~~a~ 748 (924)
...+..|++++|.+.+.....- .+.| +.....+.++++-.|+++.|.+.++.+.++....... +..++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----~P~d----a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----SPKD----ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----CTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----CCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH
Confidence 3557899999999988876652 2234 5667788999999999999999999877643321111 22244
Q ss_pred HHHHHHHHHHhc------CChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhH
Q 002424 749 VLLLLAEIHKKS------GNAVLGIPYALASLSFCQLLNLDLLKASATLTLAELWLSFGPNHAKMASNLIQQALPL 818 (924)
Q Consensus 749 al~~la~i~~~~------G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l~~~lG~~~~~~Al~lLe~aLp~ 818 (924)
+...+..++... |.+..-+..+.+|+... .-|+. ++|.++-++++..
T Consensus 77 aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~---------------------~~G~~--~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSM---------------------VSQDY--EQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHH---------------------HHTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHh---------------------hcCCH--HHHHHHHHHHHhc
Confidence 556666666543 33344444444444432 25665 7777776666554
No 267
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=33.50 E-value=1e+02 Score=30.99 Aligned_cols=98 Identities=12% Similarity=-0.011 Sum_probs=64.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Q 002424 718 LAANQFSEAAAVAHSLFCMCYKFN-LQVENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQLLNLDLLKASATLTLAEL 796 (924)
Q Consensus 718 ~~~G~~~eAl~~l~~aL~~~~~~g-d~~~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~~~g~~~~~A~al~~La~l 796 (924)
++-.|.+.|+-++.++++ .| |+.-.+|=|+..|.=-....+| .|+..+..|...+...|.+-.+ .-+.-|-+
T Consensus 46 iRGSDpDAALywLaRMl~----~GEDp~~IaRRLvi~AsEDIGlAdP-~Al~~a~aa~~a~~~iG~PE~~--i~Laqavi 118 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVE----AGEDPNFIFRRLLISACEDIGLADP-NAIVVVQSCCDAFDRVGFPEGL--FFLSQASL 118 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHTTGGGST-THHHHHHHHHHHHHHHCTTTTH--HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 456688888888888876 24 7777788777777666666666 7888899999999999997333 23334445
Q ss_pred HHHcCCChHHHHHHHHHHHHhHHHhhCC
Q 002424 797 WLSFGPNHAKMASNLIQQALPLILGHGG 824 (924)
Q Consensus 797 ~~~lG~~~~~~Al~lLe~aLp~vl~~gd 824 (924)
++++--- =..+ ..+..++..+...+.
T Consensus 119 yLA~APK-SNs~-~A~~~A~~~v~~~~~ 144 (213)
T 3ctd_A 119 YLAISPK-SNST-KSIFKAMEAIKATNV 144 (213)
T ss_dssp HHHHSCC-CCGG-GHHHHHHHHHC----
T ss_pred HHHcCCc-cHHH-HHHHHHHHHHHhcCC
Confidence 5443322 0345 777778777766543
No 268
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.65 E-value=2.1e+02 Score=32.30 Aligned_cols=112 Identities=9% Similarity=0.078 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHhH----HHhhCCHHHHHHHHHHHHHhhhcCCCCCCCCChHHHHHHHHHHHHH-H
Q 002424 791 LTLAELWLSFGPNHAKMASNLIQQALPL----ILGHGGLELRARAFIAEAKCLLSDPSFSVSQNPEAVLDPLRQASEE-L 865 (924)
Q Consensus 791 ~~La~l~~~lG~~~~~~Al~lLe~aLp~----vl~~gd~~~~A~a~~~LAr~~la~~~~~~~g~~~~Al~~L~~A~~~-f 865 (924)
..|-.+|..+|.. .-|..++..+-.. -.+.-....+++.++.+||.++- .+++.+|-++|.+|+.. +
T Consensus 180 n~L~kiYFkl~~~--~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~------~~~y~~A~~~L~~A~~~lc 251 (455)
T 3t5v_B 180 NKLNNIYFRIESP--QLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLL------NSQVHNAFVQFNEAFQSLL 251 (455)
T ss_dssp HHHHHHHHHSSCC--TTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH--HHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHH------HccHHHHHHHHHHHHHhcC
Confidence 4466788888888 7777776554332 13345677999999999999998 89999999999999987 4
Q ss_pred Hhh-c---CHHHHHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHHHHhhhc
Q 002424 866 QVL-E---DHELAAEAFYLIAIVFDKLGRLAEREE--------AAALFKEYVLALEN 910 (924)
Q Consensus 866 ~~l-~---~~~~~~~vl~~lA~l~~~lGd~~~r~~--------aa~~f~~l~~~~~~ 910 (924)
-.- + .......++-.+--+.--+|+.+.+.- -...|..+..++..
T Consensus 252 p~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~AVr~ 308 (455)
T 3t5v_B 252 NLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYKHVRY 308 (455)
T ss_dssp HCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHHHHHh
Confidence 322 1 233445577777777777887544322 22236666665554
No 269
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=28.58 E-value=3.2e+02 Score=34.29 Aligned_cols=91 Identities=9% Similarity=-0.126 Sum_probs=60.6
Q ss_pred HHHHHcCCHHHHHHHHHHHhhhh-hccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccchhHHHHHH
Q 002424 673 ERSLHRGHLKLAQKVCDELGVMA-SSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQVENASVLL 751 (924)
Q Consensus 673 ~~al~~G~~~~A~~~l~~ll~l~-~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~~~a~al~ 751 (924)
.-+...|+.++|..++....... ... .| -....+.++.-+.+.|+.++|+++++++... |-.... ....
T Consensus 135 dglcK~G~leeA~~Lf~eM~~m~~kG~---~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----G~~PDv-vTYn 204 (1134)
T 3spa_A 135 KCCLLTDQLPLAHHLLVVHHGQRQKRK---LL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----GLTPDL-LSYA 204 (1134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSHHHHT---TC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCCCH-HHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhhcCC---CC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCcH-HHHH
Confidence 67778999999999998765421 111 12 1456778888899999999999999998652 433322 2222
Q ss_pred HHHHHHHhcCCh-hhhHHHHHHH
Q 002424 752 LLAEIHKKSGNA-VLGIPYALAS 773 (924)
Q Consensus 752 ~la~i~~~~G~~-~~Al~~l~~A 773 (924)
.+-..+.+.|+. ++|..++.+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHH
Confidence 222345677875 5677776544
No 270
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.30 E-value=3.4e+02 Score=29.65 Aligned_cols=105 Identities=16% Similarity=-0.047 Sum_probs=78.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccC---------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcccch
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVT---------GVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCMCYKFNLQV 744 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~---------~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~~~~~gd~~ 744 (924)
..-...+..+|.++++++........ ..+.+....+....+..++..|+..+|...++++-......++..
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 34466789999999988755321110 112345678888999999999999999999999988777766554
Q ss_pred --hHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Q 002424 745 --ENASVLLLLAEIHKKSGNAVLGIPYALASLSFCQ 778 (924)
Q Consensus 745 --~~a~al~~la~i~~~~G~~~~Al~~l~~AL~la~ 778 (924)
..+......+..|...+++..+...+...+....
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 4566677778888899999888888877776554
No 271
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.65 E-value=75 Score=25.17 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHCCCchHHHHHHHHhhhhcCcHHHHHHHHHhhhhcc
Q 002424 304 FELILRQLQKLAPELHRVHFLRYLNSLYHDDYFAALENLHRYFDYS 349 (924)
Q Consensus 304 l~~~~~~~~~~~p~~~~~~~l~~L~~~~~~dy~~A~d~Lh~yFD~~ 349 (924)
.++.+.+|+..+|++.....-.-|.+ ..||...|++.|-..=+..
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a-~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEA-QRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTT-TTTCHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHH-cCCCHHHHHHHHHcCcCCC
Confidence 45678888889999986555555555 8999999999998855544
No 272
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=25.71 E-value=92 Score=27.71 Aligned_cols=34 Identities=15% Similarity=-0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++..+--|...++.|+|++|.+.+++|.+.+.
T Consensus 18 G~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~ 51 (105)
T 2e2a_A 18 GDARSKLLEALKAAENGDFAKADSLVVEAGSCIA 51 (105)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678888888889999999999999999987654
No 273
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=25.32 E-value=95 Score=27.52 Aligned_cols=34 Identities=9% Similarity=-0.061 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++..+--|...++.|+|++|.+.++++.+.+.
T Consensus 16 G~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~ 49 (103)
T 1wcr_A 16 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMALN 49 (103)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678888888889999999999999999887654
No 274
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.54 E-value=2.1e+02 Score=32.27 Aligned_cols=92 Identities=11% Similarity=0.042 Sum_probs=61.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhhhh--ccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHcc----cch
Q 002424 672 HERSLHRGHLKLAQKVCDELGVMAS--SVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLFCM-CYKFN----LQV 744 (924)
Q Consensus 672 ~~~al~~G~~~~A~~~l~~ll~l~~--~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL~~-~~~~g----d~~ 744 (924)
+..++..|+...|..++..+..-.. ....--........+..|++++..++|.+|.+.+.+|+.. |.... ...
T Consensus 183 ~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~ 262 (455)
T 3t5v_B 183 NNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITR 262 (455)
T ss_dssp HHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhh
Confidence 3788899999999998887655210 1111112346788899999999999999999999999998 87431 122
Q ss_pred hHHHHHHHHHHHHHhcCCh
Q 002424 745 ENASVLLLLAEIHKKSGNA 763 (924)
Q Consensus 745 ~~a~al~~la~i~~~~G~~ 763 (924)
....++..+--+.+-.|+.
T Consensus 263 n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 263 NGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 2233444444445555654
No 275
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=23.20 E-value=6.7e+02 Score=26.37 Aligned_cols=194 Identities=15% Similarity=0.057 Sum_probs=122.7
Q ss_pred HHHccCHHHHHHHHHHHHHHhhccCchHHH-------HHHHhhHHHHHHHcCC----HHH-HHHHHH---HHhhhhhccC
Q 002424 635 LAVFKGYKEAFSALKIAEEKFLSVSKSRIL-------LLKLQLLHERSLHRGH----LKL-AQKVCD---ELGVMASSVT 699 (924)
Q Consensus 635 ~a~~G~y~eA~~~L~~a~~~f~~~~~~~~~-------~l~l~l~~~~al~~G~----~~~-A~~~l~---~ll~l~~~~~ 699 (924)
+....+.+.-+.+|..+...|..-|..++. ...+.+. .+...+.+ |.. +..++. +.....-.
T Consensus 15 li~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~-r~~~~~~~~d~~~~~~~~kif~fv~~~i~~L~~-- 91 (298)
T 2r17_C 15 LLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA-FRYKENSKVDDKWEKKCQKIFSFAHQTISALIK-- 91 (298)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH-HHHHTTTTTCSSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHH-HHHHhcccchhhHHHHHHHHHHHHHHHHHHHhc--
Confidence 344567888888888888888766644321 1112221 12211221 221 122222 22221111
Q ss_pred CCCcchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH-cccchhHHHHHHHHHHHHHhcCChhhh--HHHHHHH
Q 002424 700 GVDMDLKTEASLRHARTLLAANQ---FSEAAAVAHSLFCMCYK-FNLQVENASVLLLLAEIHKKSGNAVLG--IPYALAS 773 (924)
Q Consensus 700 ~~D~~~~a~a~~~~a~ll~~~G~---~~eAl~~l~~aL~~~~~-~gd~~~~a~al~~la~i~~~~G~~~~A--l~~l~~A 773 (924)
...|+......+.-|.+--..|- -+-|.+.+.+++.++.+ ..|...+..++..+.....+...+..- -.+..++
T Consensus 92 ~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~ 171 (298)
T 2r17_C 92 AELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQC 171 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHH
Confidence 12455566655555555555555 67788999999999887 889999999998888888887776333 3333455
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHH----------cCCChHHHHHHHHHHHHhHHHhhCCHHHHHHHHH
Q 002424 774 LSFCQLLNLDLLKASATLTLAELWLS----------FGPNHAKMASNLIQQALPLILGHGGLELRARAFI 833 (924)
Q Consensus 774 L~la~~~g~~~~~A~al~~La~l~~~----------lG~~~~~~Al~lLe~aLp~vl~~gd~~~~A~a~~ 833 (924)
...+.+.=-..-.+++...-+.+|.. .-++ ++.+++|+++|-.+..+.+....-..+.
T Consensus 172 t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~--krVleCLqkaLkiA~~~~d~~~~v~Lfv 239 (298)
T 2r17_C 172 ALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG--KRVMECLKKALKIANQCMDPSLQVQLFI 239 (298)
T ss_dssp HHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCH--HHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccch--HHHHHHHHHHHHHHHHHhChhhHHHHHH
Confidence 55555555667788899988999974 1234 7999999999999999988666655544
No 276
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.67 E-value=2.3e+02 Score=28.06 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=47.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhccCc-hHHHHHHHhhHHHHHHHcCCHHHH
Q 002424 615 FSDGSSLSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFLSVSK-SRILLLKLQLLHERSLHRGHLKLA 684 (924)
Q Consensus 615 ~~~~~~~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~~~~~-~~~~~l~l~l~~~~al~~G~~~~A 684 (924)
+.+..+....+.-..-+|..+..+++|.+|.+.|.+|....+..+. ++.+++.+-+ -..+..|+....
T Consensus 4 ~~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLI--p~~Ll~G~iP~~ 72 (203)
T 3t5x_A 4 MKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLL--PVKMLLGHMPTV 72 (203)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH--HHHHHTTCEECH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHH--HHHHHcCCCCCH
Confidence 3455677788888999999999999999999999999998776543 2344554322 355667876543
No 277
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=22.24 E-value=1.2e+02 Score=27.23 Aligned_cols=34 Identities=21% Similarity=0.011 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++..+--|...++.|+|++|.+.++++.+.+.
T Consensus 20 G~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~ 53 (109)
T 3k1s_A 20 GNARSFAMEALQFAKQGKMAEADEAMVKAKEAIN 53 (109)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5677888888889999999999999999987654
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.52 E-value=1.4e+02 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.003 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 621 LSDAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 621 ~d~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
....+.-+...|.-.-..|+|.+|+.++.++.+.|-
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 456677788888888889999999999999888764
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=21.25 E-value=8.6e+02 Score=28.29 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002424 674 RSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQFSEAAAVAHSLF 734 (924)
Q Consensus 674 ~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~~~eAl~~l~~aL 734 (924)
.+++.|+|..|..++.++.. +........+-+|+.+.+.|+.++|...++.+.
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45566777777777765543 111234556667777777777777777776654
No 280
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=21.18 E-value=1.2e+02 Score=27.55 Aligned_cols=34 Identities=24% Similarity=0.101 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Q 002424 623 DAALAHVKLIQHLAVFKGYKEAFSALKIAEEKFL 656 (924)
Q Consensus 623 ~~~~a~~~La~~~a~~G~y~eA~~~L~~a~~~f~ 656 (924)
+.++..+--|...++.|+|++|.+.+++|.+.+.
T Consensus 35 G~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 68 (120)
T 3l8r_A 35 GNARSIVHEAFDAMREKNYILAEQKLQEANDELL 68 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5678888888889999999999999999987654
No 281
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.92 E-value=6.3e+02 Score=25.20 Aligned_cols=84 Identities=7% Similarity=-0.097 Sum_probs=49.1
Q ss_pred HhhccCchHHHHHHHhhHHHHHHHcCCHHHHHHHHHHHhhhhhccCCCCcchHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 002424 654 KFLSVSKSRILLLKLQLLHERSLHRGHLKLAQKVCDELGVMASSVTGVDMDLKTEASLRHARTLLAANQ-FSEAAAVAHS 732 (924)
Q Consensus 654 ~f~~~~~~~~~~l~l~l~~~~al~~G~~~~A~~~l~~ll~l~~~~~~~D~~~~a~a~~~~a~ll~~~G~-~~eAl~~l~~ 732 (924)
.|...++.++-.+. +|...++-.|.+.|..++.+++. ++.|| .+.+........-.-|. .-.|+.....
T Consensus 27 ~yDk~Gd~HYd~IS---Af~KSiRGSDpDAALywLaRMl~-----~GEDp--~~IaRRLvi~AsEDIGlAdP~Al~~a~a 96 (213)
T 3ctd_A 27 VYDKNGQNHFDVIS---AFIKSIRGSDPDATLYWLANMVE-----AGEDP--NFIFRRLLISACEDIGLADPNAIVVVQS 96 (213)
T ss_dssp -------CHHHHHH---HHHHHHHTTCHHHHHHHHHHHHH-----TTCCH--HHHHHHHHHHHHHTTGGGSTTHHHHHHH
T ss_pred ccCCCchHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHH-----cCCCH--HHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 44445555555544 12678899999999999999987 34465 33433333333333331 1347777777
Q ss_pred HHHHHHHcccchhHH
Q 002424 733 LFCMCYKFNLQVENA 747 (924)
Q Consensus 733 aL~~~~~~gd~~~~a 747 (924)
+...+...|.+.+++
T Consensus 97 a~~a~~~iG~PE~~i 111 (213)
T 3ctd_A 97 CCDAFDRVGFPEGLF 111 (213)
T ss_dssp HHHHHHHHCTTTTHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 777788888887665
No 282
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=20.08 E-value=7.9e+02 Score=27.23 Aligned_cols=107 Identities=14% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhcCChhhhHHHH--------------HHHHHH--HHHhCCcHHHHHHHHHHHH
Q 002424 732 SLFCMCYKFNLQVENASVLLLLAEIHKKSGNAVLGIPYA--------------LASLSF--CQLLNLDLLKASATLTLAE 795 (924)
Q Consensus 732 ~aL~~~~~~gd~~~~a~al~~la~i~~~~G~~~~Al~~l--------------~~AL~l--a~~~g~~~~~A~al~~La~ 795 (924)
+++...+..+.+...++-+..++..|...|++.+|--.+ ..++.. .....-...+-+.++..+-
T Consensus 20 ~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i 99 (436)
T 2yin_A 20 NLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETII 99 (436)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHH
Q ss_pred HHHHcCCChHHHHHHHHHHHHhHHHhh-CCHHHHHHHHHHHHHhh
Q 002424 796 LWLSFGPNHAKMASNLIQQALPLILGH-GGLELRARAFIAEAKCL 839 (924)
Q Consensus 796 l~~~lG~~~~~~Al~lLe~aLp~vl~~-gd~~~~A~a~~~LAr~~ 839 (924)
-+...|.. ++.|+.+++..+|..... -|...-+.++..+|++|
T Consensus 100 ~~f~kg~~-~E~ai~l~k~L~~~yE~~~~Dy~~Ls~~~~~~a~~y 143 (436)
T 2yin_A 100 GYFDKGKM-WEEAISLCKELAEQYEMEIFDYELLSQNLIQQAKFY 143 (436)
T ss_dssp HHHHHHTC-HHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!