Your job contains 1 sequence.
>002426
MQLRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICL
SATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSL
NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI
DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAV
REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS
LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV
SQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLA
AKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRR
MELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASI
NDSFALNRLAQSNGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQG
DALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPVLSSLSESDEVLH
MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLT
KRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKI
LLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKH
GVEIPCCLDSQFSGMVEAWASGLTWREMMMDCALDDGDLARLLRRTIDLLAQIPKLPDVD
QRLQKNAVDASNVMDRPPISELAG
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002426
(924 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 3339 0. 1
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 528 3.2e-51 2
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 364 2.2e-48 3
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 530 4.3e-48 2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 517 1.8e-45 2
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 513 1.6e-44 2
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 490 4.2e-43 2
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 486 4.2e-43 2
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 486 4.2e-43 2
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 486 5.0e-43 2
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 486 5.0e-43 2
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 341 8.8e-43 2
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 486 9.3e-43 2
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 484 1.5e-42 2
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 484 1.7e-42 2
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 484 1.9e-42 2
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 484 2.0e-42 2
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 447 1.1e-41 2
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 431 4.4e-40 3
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 341 2.4e-39 3
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 442 3.4e-39 2
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 435 4.9e-39 2
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 289 5.1e-39 3
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel... 425 5.0e-38 2
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 444 2.1e-37 2
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 408 1.0e-36 2
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 308 2.0e-36 2
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 306 3.4e-36 3
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 308 1.5e-35 2
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 435 1.7e-35 2
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 308 2.2e-35 2
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 404 2.6e-35 2
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 306 3.7e-35 2
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 306 6.2e-35 3
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 306 8.2e-35 3
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 306 1.0e-34 3
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 295 2.1e-33 3
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 393 8.4e-33 1
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 291 1.0e-32 3
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 268 5.0e-31 2
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein... 268 1.0e-27 2
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 319 8.3e-27 2
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species... 336 8.8e-27 2
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein... 317 5.3e-26 3
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 336 8.8e-25 2
DICTYBASE|DDB_G0278827 - symbol:DDB_G0278827 "Probable AT... 196 4.4e-16 4
POMBASE|SPAC694.02 - symbol:SPAC694.02 "DEAD/DEAH box hel... 185 1.2e-15 4
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 200 2.3e-15 2
ZFIN|ZDB-GENE-060503-421 - symbol:helq "helicase, POLQ-li... 171 2.8e-15 2
UNIPROTKB|G4MUH1 - symbol:MGG_07250 "DEAD/DEAH box helica... 179 3.0e-15 3
UNIPROTKB|J9P160 - symbol:HELQ "Uncharacterized protein" ... 163 1.5e-14 2
UNIPROTKB|E2RST3 - symbol:HELQ "Uncharacterized protein" ... 163 1.6e-14 2
MGI|MGI:2176740 - symbol:Helq "helicase, POLQ-like" speci... 163 3.0e-14 2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 194 4.7e-14 2
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 194 4.7e-14 2
UNIPROTKB|F1RIW4 - symbol:DDX60 "Uncharacterized protein"... 194 5.9e-14 2
UNIPROTKB|F1NYH9 - symbol:HELQ "Uncharacterized protein" ... 167 6.3e-14 2
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 178 8.5e-14 2
RGD|1560014 - symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box po... 184 1.7e-13 3
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 152 3.1e-13 3
UNIPROTKB|Q5H9U9 - symbol:DDX60L "Probable ATP-dependent ... 191 3.2e-13 2
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 148 3.7e-13 3
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 163 3.7e-13 3
UNIPROTKB|E9PSY5 - symbol:Helq "Protein Helq" species:101... 158 4.2e-13 2
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 184 4.5e-13 3
UNIPROTKB|Q8TDG4 - symbol:HELQ "Helicase POLQ-like" speci... 161 4.8e-13 3
UNIPROTKB|E9PT19 - symbol:Helq "Protein Helq" species:101... 157 6.9e-13 2
UNIPROTKB|F1RVE2 - symbol:HELQ "Uncharacterized protein" ... 159 9.4e-13 2
FB|FBgn0263599 - symbol:l(3)72Ab "lethal (3) 72Ab" specie... 188 1.4e-12 3
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 205 2.1e-12 4
FB|FBgn0002905 - symbol:mus308 "mutagen-sensitive 308" sp... 154 3.8e-12 4
ASPGD|ASPL0000044033 - symbol:AN2482 species:162425 "Emer... 160 6.0e-12 2
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 155 9.2e-12 4
POMBASE|SPBC13G1.10c - symbol:mug81 "ATP-dependent RNA he... 143 1.6e-11 2
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 143 2.0e-11 2
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R... 176 2.5e-11 3
UNIPROTKB|E3W980 - symbol:HELQ "Helicase POLQ-like" speci... 161 2.6e-11 3
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 175 3.3e-11 3
UNIPROTKB|F1SU44 - symbol:F1SU44 "Uncharacterized protein... 163 3.5e-11 2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 183 4.9e-11 3
POMBASE|SPAC9.03c - symbol:brr2 "U5 snRNP complex subunit... 162 1.2e-10 2
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 175 1.4e-10 4
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 175 1.4e-10 4
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 168 1.8e-10 3
TAIR|locus:2089144 - symbol:RCK "ROCK-N-ROLLERS" species:... 163 1.9e-10 4
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 164 2.0e-10 3
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 156 3.4e-10 2
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 132 4.3e-10 2
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 165 1.2e-09 3
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 165 1.2e-09 3
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 163 1.3e-09 3
UNIPROTKB|F1NTD6 - symbol:ascc3 "Activating signal cointe... 154 1.8e-09 3
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 166 1.9e-09 4
ZFIN|ZDB-GENE-040724-232 - symbol:si:rp71-1p14.5 "si:rp71... 157 2.2e-09 3
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 145 2.3e-09 3
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 159 2.8e-09 2
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 159 2.9e-09 2
MGI|MGI:1925237 - symbol:Ascc3 "activating signal cointeg... 153 3.5e-09 3
RGD|1307995 - symbol:Ascc3 "activating signal cointegrato... 152 4.5e-09 3
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 158 7.8e-09 3
WARNING: Descriptions of 26 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 3339 (1180.4 bits), Expect = 0., P = 0.
Identities = 646/926 (69%), Positives = 767/926 (82%)
Query: 3 LRIVVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSA 62
LR +++ SVGM SS +GLF VD IVLDEVHYLSDISRGTVWEEI+IYCPKEVQ+ICLSA
Sbjct: 249 LRNMLYQ-SVGMASSGTGLFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSA 307
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
TVAN DELAGWIG+IHGKTEL+TS+RRPVPLTWYFSTK +LLPLLDEKG ++NRKLSLNY
Sbjct: 308 TVANPDELAGWIGEIHGKTELVTSTRRPVPLTWYFSTKHSLLPLLDEKGINVNRKLSLNY 367
Query: 123 LQLSTSEVKPYKDG--GSRRRNSRKHA-DMNSNNIVTSFGQHQLSKNSINAIRRSQVPQV 179
LQLS SE + ++D G R+R S+K D + NN+V + + LSKN IN IRRSQVPQ+
Sbjct: 368 LQLSASEAR-FRDDDDGYRKRRSKKRGGDTSYNNLV-NVTDYPLSKNEINKIRRSQVPQI 425
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 239
DTLWHL+ ++MLPAIWFIFNRRGCDAAVQY+E+ LLD+CE SEVELALK+FR+LYPDA
Sbjct: 426 SDTLWHLQGKNMLPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDA 485
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
VRE A KGLL+G+AAHHAGCLP+WKSFIEELFQRGLVKVVFATETLAAGINMPARTAV+S
Sbjct: 486 VRESAEKGLLRGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIS 545
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
SLSK+ + RI+L NEL+QMAGRAGRRGID +G+ VLVQT +EGAEECCKL+FAGV+PL
Sbjct: 546 SLSKKAGNERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPL 605
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVML 419
VSQFTASYGMVLNL+AG+KV S+ ++ K LQAGRSLEEA+KLVE+SFGNYV SNV +
Sbjct: 606 VSQFTASYGMVLNLVAGSKVTRKSSGTEAGKVLQAGRSLEEAKKLVEKSFGNYVSSNVTV 665
Query: 420 AAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRR 479
AAK EL +I + ++L+SEISD+AID+KSR+LLS YKE+ L+EEL+ EKR R E RR
Sbjct: 666 AAKQELAEIDNKIEILSSEISDEAIDKKSRKLLSARDYKEITVLKEELREEKRKRAEQRR 725
Query: 480 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 539
RMEL+RF ALK +LK E G+LPF+CL++KDSEG E SVPAVYLG DS SKL+ M S
Sbjct: 726 RMELERFLALKPLLKGMEEGNLPFICLEFKDSEGREQSVPAVYLGHIDSFQGSKLQKMMS 785
Query: 540 INDSFALNRLAQS-NGDDYDTQDVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALA 598
+++SFALN + D+ +VKPSYYVALGSDN+WY FTEKW++TVYR GFPN+ALA
Sbjct: 786 LDESFALNLIEDELAADEPGKPNVKPSYYVALGSDNSWYLFTEKWVRTVYRTGFPNIALA 845
Query: 599 QGDALPRETMSLLLDKGEMLWEKLADSEFGGLWCMEGSLETWSWSLNVPXXXXXXXXXXX 658
GDALPRE M LLDK +M W+KLA+SE G LW +EGSLETWSWSLNVP
Sbjct: 846 LGDALPREIMKNLLDKADMQWDKLAESELGSLWRLEGSLETWSWSLNVPVLSSLSDEDEV 905
Query: 659 XHMSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKR 718
HMS EY +A + YKEQR+K++RLKKK++R+EGF+EYKKI++ T EK+KRLKARS+R
Sbjct: 906 LHMSEEYDNAAQKYKEQRSKISRLKKKMSRSEGFREYKKILENANLTVEKMKRLKARSRR 965
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRN 778
L R+EQIEPSGWK+F+RISNVIHE+RALDINT +IFPLGETAAAIRGENELWLAMVLRN
Sbjct: 966 LINRLEQIEPSGWKDFMRISNVIHESRALDINTHLIFPLGETAAAIRGENELWLAMVLRN 1025
Query: 779 KILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
K L+DLKP QLA VCASLVSEGIKVR W++N+ IYEPS TV++++N L++ RSS ++LQE
Sbjct: 1026 KALVDLKPPQLAGVCASLVSEGIKVRPWRDNNYIYEPSDTVVDMVNFLEDQRSSLIKLQE 1085
Query: 839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQIPKLPD 898
KH V IPCCLD QFSGMVEAWASGL+W+EMMM TIDLLAQIPKLPD
Sbjct: 1086 KHEVMIPCCLDVQFSGMVEAWASGLSWKEMMMECAMDEGDLARLLRRTIDLLAQIPKLPD 1145
Query: 899 VDQRLQKNAVDASNVMDRPPISELAG 924
+D LQ++A A+++MDRPPISELAG
Sbjct: 1146 IDPVLQRSAAAAADIMDRPPISELAG 1171
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 528 (190.9 bits), Expect = 3.2e-51, Sum P(2) = 3.2e-51
Identities = 168/475 (35%), Positives = 234/475 (49%)
Query: 5 IVVFSCSV--GMVSSES-GLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
+VV + V M+ ++S L + +V+DEVH+L+D RG VWEE+I+ P +V+++ LS
Sbjct: 104 VVVMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLS 163
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
ATV+NA+E GWI + G T ++ RPVPL W + L+ GK M L
Sbjct: 164 ATVSNAEEFGGWIQTVRGDTTVVVDEHRPVPL-W----QHVLV------GKRM---FDLF 209
Query: 122 YLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
++ +E +P + R + R+ AD + + + R P+VI
Sbjct: 210 DYRIGEAEGQPQVNRELLRHIAHRREADR-----MADWQPRRRGSGRPGFYRPPGRPEVI 264
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAV-QYLED-CNLLDECEMSEV-ELALKRFRILYP 237
L + +LPAI F+F+R GCDAAV Q L L E E + + E+ R L
Sbjct: 265 AKL---DAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLAD 321
Query: 238 DAVREPAI----KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ +GLL+G+AAHHAG LP ++ +EELF GLVK VFATETLA GINMPA
Sbjct: 322 SDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPA 381
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT VL L K + LT E Q+ GRAGRRGID GH V++ P E L
Sbjct: 382 RTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLAS 441
Query: 354 AGVEPLVSQFTASYGMVLNLL--AGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGN 411
PL S F SY M +NL+ G + H E QA RS+ + +E+ GN
Sbjct: 442 TRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQS-FAQYQADRSVVGLVRGIER--GN 498
Query: 412 YVGSNVM--LAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQ 464
+ + L D SE+ + A R SR +AA +A L+
Sbjct: 499 RILGEIAAELGGSDAPILEYARLRARVSEL-ERAQARASRLQRRQAATDALAALR 552
Score = 78 (32.5 bits), Expect = 3.2e-51, Sum P(2) = 3.2e-51
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 707 EKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALD--INTQVIFPLGETAAAI 764
E+ R++ + +L +++ S + F R ++ E +D V+ G A I
Sbjct: 681 ERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARI 740
Query: 765 RGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
E++L +A LR LKPA+LA V +++V E
Sbjct: 741 YSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE 775
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 364 (133.2 bits), Expect = 2.2e-48, Sum P(3) = 2.2e-48
Identities = 86/248 (34%), Positives = 140/248 (56%)
Query: 134 KDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
+DG G R ++R A+ + + G ++ + + + P++++ +LR R++L
Sbjct: 571 RDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVN---YLRKRELL 627
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGL 248
P + F+F+++ C+ +LE N + E S++ + +++ R+ P I + L
Sbjct: 628 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 687
Query: 249 L-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L +G+A HH G LPI K IE LF +G +KV+FATET A G+N+P RT + SS+ K +
Sbjct: 688 LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGN 747
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTAS 366
G +LT E QMAGRAGRRG+D+ G V+++ + K + GV L SQF +
Sbjct: 748 GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLT 807
Query: 367 YGMVLNLL 374
Y M+LNLL
Sbjct: 808 YNMILNLL 815
Score = 212 (79.7 bits), Expect = 2.2e-48, Sum P(3) = 2.2e-48
Identities = 49/129 (37%), Positives = 73/129 (56%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D RG VWEE+II P+ V+ I LSATV N E A WIG+ K
Sbjct: 437 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNI 496
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD---- 135
+I++ +RPVPL K L+P++++ + + N + L +++ P K
Sbjct: 497 YVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 556
Query: 136 GGSRRRNSR 144
GGS R R
Sbjct: 557 GGSTARGGR 565
Score = 70 (29.7 bits), Expect = 2.2e-48, Sum P(3) = 2.2e-48
Identities = 51/217 (23%), Positives = 92/217 (42%)
Query: 671 NYKEQRTKVAR--LKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI-- 726
N ++Q K+ + L + R E FK K + ++ + + KA + K+IE++
Sbjct: 1024 NIEKQGLKIHQILLDRTNIRDEIFK--LKSIKCPNLSQHIVPKFKAHV--IKKKIEELYH 1079
Query: 727 -----EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 781
S ++ + V+ +T +D N V+ G A I EL L ++ + L
Sbjct: 1080 LMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLK-GRVACEINSGYELVLTELILDNFL 1138
Query: 782 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHG 841
+P ++ A+ + V EG K R + I P + ++E L + H
Sbjct: 1139 GSFEPEEIVALLSVFVYEG-KTR--EEEPPIVTPR--LAKGKQRIEEIYKKMLCVFNTH- 1192
Query: 842 VEIPCCLDS-------QFSGM--VEAWASGLTWREMM 869
+IP D +F+ M V WA GL+++E+M
Sbjct: 1193 -QIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIM 1228
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 530 (191.6 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 126/362 (34%), Positives = 193/362 (53%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
DV+ ++ DEVHY++D+ RG VWEE+II P V +I LSATV N E A W+G+ K
Sbjct: 386 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNI 445
Query: 83 LITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKD--GGSR 139
+ S+ +RPVPL Y K + ++D+ G R L Y + + KP K
Sbjct: 446 YVISTLKRPVPLEHYLWVKQNMFKIVDQHG----RFLMDGYKSANDALKKPDKPVIAKDN 501
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
+ ++R + T+ + + S ++ R + + HL +++LP I F+F
Sbjct: 502 KNSARGRGAARGRGVQTNMMR---GRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVF 558
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYPDAVREPAI----KGLLKGVA 253
+++ C+ V L + +L + E SEV + +++ R+ D + P I + L +G+A
Sbjct: 559 SKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLL-PQIGRMREMLSRGLA 617
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH G LPI K +E LFQRGLVKV+FATET A G+NMPA++ V S K L
Sbjct: 618 VHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLL 677
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN 372
E Q +GRAGRRG+D G V+++ ++ ++ L+SQF +Y M+LN
Sbjct: 678 PGEYTQCSGRAGRRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILN 737
Query: 373 LL 374
LL
Sbjct: 738 LL 739
Score = 54 (24.1 bits), Expect = 4.3e-48, Sum P(2) = 4.3e-48
Identities = 12/56 (21%), Positives = 29/56 (51%)
Query: 404 LVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKE 459
++++SF V ++ ++++ +++ L E+SD + LLS ++KE
Sbjct: 749 MIKRSFSENVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSCLLSSESFKE 804
Score = 41 (19.5 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 662 SFEYHDAVENYKEQRTKV--ARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRL 712
SFE + + K++ + V +K + +E FKEY K + T KR+
Sbjct: 772 SFE--EKLSALKKEMSDVDLKEIKSCLLSSESFKEYTKKMHFRAITTANGKRI 822
Score = 41 (19.5 bits), Expect = 9.9e-47, Sum P(2) = 9.9e-47
Identities = 37/194 (19%), Positives = 76/194 (39%)
Query: 443 AIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGH-L 501
+ + K L E + ++ ++ L + + F+ E ++M + + + F++G +
Sbjct: 772 SFEEKLSALKKEMSDVDLKEIKSCLLSSESFK-EYTKKMHFRAITTANG-KRIFKDGRVI 829
Query: 502 PFLCLQYKDSEGVEHSVPAVYLGKFD-SLDSSKLKNMASINDSFALNRLAQSNGDDYDTQ 560
F L + + GV ++ D +L+ + L ++ L A + D YD
Sbjct: 830 VFQQLDFTRTVGVLLGT-SIRTNASDCTLEVAYLNPQNNLKRPSDLLAFADAFNDVYDNA 888
Query: 561 DVKPSYYVALGSDNTWYTFTEKWIKTVYRIGFPNVALAQGDALPR--ETMSLLLDKGEML 618
S G N + E+ T+ RI + +G A + E + + ++L
Sbjct: 889 IFDESNQFKYGLINL--SGIERVCNTILRIDSGGIRDRRGGAFRKLSEQFASIKKFSDLL 946
Query: 619 -----WEKLADSEF 627
W K+ D EF
Sbjct: 947 FEEVNWSKVRDFEF 960
Score = 40 (19.1 bits), Expect = 1.3e-46, Sum P(2) = 1.3e-46
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 676 RTKVARLKKKIARTEGFKEYKKIVDT-VKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEF 734
R + R++ I R+ F E + T V EEKIK + + L K + ++ K
Sbjct: 740 RVETLRIEDMIKRS--FSE--NVNQTLVPQHEEKIKSFEEKLSALKKEMSDVDLKEIKSC 795
Query: 735 LRISNVIHE 743
L S E
Sbjct: 796 LLSSESFKE 804
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 517 (187.1 bits), Expect = 1.8e-45, Sum P(2) = 1.8e-45
Identities = 172/547 (31%), Positives = 264/547 (48%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ +V DEVHY+++ RG VWEE++I P V+I+ LSATV N E A W+G+I K
Sbjct: 398 DLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKI 457
Query: 82 ELITSSRRPVPLTWYFST----KTA--LLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY-- 133
+I++ RRPVPL + T KT L ++D G+ + + Y S+ K Y
Sbjct: 458 NVISTDRRPVPLEHFLYTGQDGKTQKDLFKIIDRSGQFILK----GYNDAKDSKAKIYEK 513
Query: 134 -KDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDML 192
K GG+ R +++ G++ KN N ++ + +++ D L
Sbjct: 514 EKAGGAGGRGTQRGGGRGGGG--NGGGRNWPGKNDKNIY--------LNLINYMKCSDQL 563
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGL 248
P + F+F+R+ CD Q L NL E E V L ++R + + + ++ L
Sbjct: 564 PMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDL 623
Query: 249 -LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L+G A HH+G LPI K +E LFQ+G VK++FATET A G+NMPAR V S+ K +
Sbjct: 624 CLRGFAVHHSGILPILKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGT 683
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVE-PLVSQFTA 365
R L E QMAGRAGRRG+D G V+++ + + K L +G L S+F
Sbjct: 684 ERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESKFRV 743
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425
+Y M+LNLL +V L E DM LQ RS E+ L E + A + +
Sbjct: 744 TYSMILNLL---RVEQLKIE--DM--LQ--RSYVESDSLRESKEKRKSLVDTKNAIQT-M 793
Query: 426 CKIQKETDVLTSEISD--DAIDRKSRRLLSEAAYKEM--ANLQEELKAEKRFRTELRRRM 481
I+ T S++ D DA+ R+ SE + ++ N+ +L RF +
Sbjct: 794 STIECSTCSPNSQLRDYHDALAVFLRK--SEHIWPKLNDENVINKLLCSGRFLIVNSAQQ 851
Query: 482 ELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIN 541
+L+ L ++K+ N L L E + A+ G F L S+L + N
Sbjct: 852 QLQNECVL--LIKELNNKTLQILVASADADETTNKNAAAI--G-FSKLPKSELSWLTEEN 906
Query: 542 DSFALNR 548
+ ++
Sbjct: 907 SLLSTSK 913
Score = 44 (20.5 bits), Expect = 1.8e-45, Sum P(2) = 1.8e-45
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 689 TEGFKEYKKIVDTVKFTEEKIKRLKAR 715
+E + K+++ + F E+K+ LK R
Sbjct: 1072 SEEYHNRLKVLEALNFVEQKMVSLKGR 1098
Score = 39 (18.8 bits), Expect = 5.9e-45, Sum P(2) = 5.9e-45
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 713
E++ R ++ R+++KI E EY+ D + +EE RLK
Sbjct: 1042 EHFSVLRDRI-RIERKI---ESL-EYELSSDALLLSEEYHNRLK 1080
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 513 (185.6 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 135/359 (37%), Positives = 190/359 (52%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E + WIG+I +
Sbjct: 424 DLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKKRHI 483
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPL Y T + +K M + N+L Y +++
Sbjct: 484 YVISTIKRPVPLEHYLYTGNSTKT---QKELFMLLDATGNFLTKGY-----YAAVEAKKE 535
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
+ KHA SFG +S+++ A + V Q + L +L R P + F F+R
Sbjct: 536 RTSKHAQ--------SFGTKNVSQHNTTASQDRAVWQTL--LNYLSQRQQTPVVAFTFSR 585
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KGLLK-GVAAHH 256
CD + L +L E SE+ L++ R+ P I + LLK G+ HH
Sbjct: 586 TRCDENARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHH 645
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K IE LF RGLVKV+FATET A G+NMPART V S+ K +G L E
Sbjct: 646 SGILPILKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGE 705
Query: 317 LFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLL 374
QMAGRAGRRG+D G V+++ + E ++ L SQF +Y M+LNLL
Sbjct: 706 YIQMAGRAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTYTMILNLL 764
Score = 39 (18.8 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 485 RFSALKDILKDFENGHLPFLCLQY 508
R L+D LKDF H P Q+
Sbjct: 1004 RQRVLQDSLKDFHCIHSPTFSEQF 1027
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 490 (177.5 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 139/371 (37%), Positives = 191/371 (51%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A W
Sbjct: 407 LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 466
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + P +G+ L L + K
Sbjct: 467 IGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLLLDSRGSFHTKG 517
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R+
Sbjct: 518 YYAAVEAKKERMSKHAQ--------TFGAKQPTNQGGPAQDRGVY---LSLLASLRAREQ 566
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 744
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 745 RLTYTMILNLL 755
Score = 50 (22.7 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 1078 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1118
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 486 (176.1 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 138/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A W
Sbjct: 214 LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 273
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + +G+ L L K
Sbjct: 274 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLLLDSRGAFHTKG 324
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 325 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 373
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 374 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 433
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 434 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 493
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 494 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 551
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 552 RLTYTMILNLL 562
Score = 51 (23.0 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 885 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 925
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 486 (176.1 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 138/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A W
Sbjct: 214 LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 273
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + +G+ L L K
Sbjct: 274 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLLLDSRGAFHTKG 324
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 325 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 373
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 374 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 433
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 434 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 493
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 494 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 551
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 552 RLTYTMILNLL 562
Score = 51 (23.0 bits), Expect = 4.2e-43, Sum P(2) = 4.2e-43
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 885 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 925
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 486 (176.1 bits), Expect = 5.0e-43, Sum P(2) = 5.0e-43
Identities = 138/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A W
Sbjct: 249 LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 308
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + +G+ L L K
Sbjct: 309 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLLLDSRGAFHTKG 359
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 360 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 408
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 409 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 468
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 469 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 528
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 529 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 586
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 587 RLTYTMILNLL 597
Score = 51 (23.0 bits), Expect = 5.0e-43, Sum P(2) = 5.0e-43
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 920 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 960
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 486 (176.1 bits), Expect = 5.0e-43, Sum P(2) = 5.0e-43
Identities = 138/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A W
Sbjct: 249 LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 308
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + +G+ L L K
Sbjct: 309 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLLLDSRGAFHTKG 359
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 360 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 408
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 409 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 468
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 469 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 528
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 529 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 586
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 587 RLTYTMILNLL 597
Score = 51 (23.0 bits), Expect = 5.0e-43, Sum P(2) = 5.0e-43
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 920 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 960
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 341 (125.1 bits), Expect = 8.8e-43, Sum P(2) = 8.8e-43
Identities = 88/241 (36%), Positives = 127/241 (52%)
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYP 237
+ + HLR ++LPA F+F+++ C+ L + + + E S + + +++ R+
Sbjct: 616 VQVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTRLKQE 675
Query: 238 DAVREPAIK--GLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
D ++ LL +G+A HH G LPI K +E LF + LVKV+FATET A G+N+P R
Sbjct: 676 DRTLPQILRLRELLSRGIAVHHGGLLPIMKEIVEILFAKTLVKVLFATETFAMGLNLPTR 735
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-----QTPYEGAEECC 349
T V S K G L E QMAGRAGRRG+DN G+V++V + P GA
Sbjct: 736 TVVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDNVGYVIVVNSGKDEAPPAGALR-- 793
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLA--GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
K++ L SQF +Y M+LNLL K+ + S A QA L E K V+
Sbjct: 794 KMILGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSENATQA--LLPEHEKQVQI 851
Query: 408 S 408
S
Sbjct: 852 S 852
Score = 204 (76.9 bits), Expect = 8.8e-43, Sum P(2) = 8.8e-43
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++D+ RG VWEE+II P+ V +I LSATV N E A W+G+ K
Sbjct: 428 DVEFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTQEFASWVGRTKKKDI 487
Query: 82 ELITSSRRPVPLTWY 96
+I++++RPVPL Y
Sbjct: 488 YVISTAKRPVPLEHY 502
Score = 37 (18.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 212 EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELF 271
E N+ C+ + LK F + + + I L + ++ + LP ++ I+ L
Sbjct: 1048 EQANIAQSCDCLKCPKFLKHFEMQRDEWQIKENISQLKQLMSDQNLQLLPDYEQRIQVLK 1107
Query: 272 QRGLV 276
G V
Sbjct: 1108 DLGFV 1112
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 486 (176.1 bits), Expect = 9.3e-43, Sum P(2) = 9.3e-43
Identities = 138/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D+ RG VWEE++I P V II LSATV NA E A W
Sbjct: 407 LYSGSDVIRDLEWVIFDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 466
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + +G+ L L K
Sbjct: 467 IGRLKRRQIYVISTVTRPVPLEHYLFTGNSS----KTQGE-----LFLLLDSRGAFHTKG 517
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 518 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 744
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 745 RLTYTMILNLL 755
Score = 51 (23.0 bits), Expect = 9.3e-43, Sum P(2) = 9.3e-43
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 1078 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 1118
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 484 (175.4 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 139/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A W
Sbjct: 407 LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 466
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + P +G+ L L K
Sbjct: 467 IGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLLLDSRGAFHTKG 517
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 518 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 744
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 745 RLTYTMILNLL 755
Score = 51 (23.0 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 1078 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 1118
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 484 (175.4 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 139/371 (37%), Positives = 190/371 (51%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A W
Sbjct: 366 LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADW 425
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + P +G+ L L K
Sbjct: 426 IGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLLLDSRGAFHTKG 476
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 477 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQ 525
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 526 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 585
Query: 248 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL+ G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 586 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 645
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 646 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 703
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 704 RLTYTMILNLL 714
Score = 50 (22.7 bits), Expect = 1.7e-42, Sum P(2) = 1.7e-42
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 1038 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1078
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 484 (175.4 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 139/371 (37%), Positives = 190/371 (51%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D RG VWEE++I P+ V II LSATV NA E A W
Sbjct: 401 LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADW 460
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + P +G+ L L K
Sbjct: 461 IGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLLLDSRGAFHTKG 511
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 512 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LALLASLRTRAQ 560
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 561 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 620
Query: 248 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL+ G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 621 LLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 680
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 681 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 738
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 739 RLTYTMILNLL 749
Score = 50 (22.7 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 1073 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1113
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 484 (175.4 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 139/371 (37%), Positives = 189/371 (50%)
Query: 14 MVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGW 73
+ S + D++ ++ DEVHY++D RG VWEE++I P V II LSATV NA E A W
Sbjct: 407 LYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADW 466
Query: 74 IGQIHGKTELITSS-RRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKP 132
IG++ + + S+ RPVPL Y T + P +G+ L L K
Sbjct: 467 IGRLKRRQIYVISTVARPVPLEHYLFTGNS--P--KTQGE-----LFLLLDSRGAFHTKG 517
Query: 133 YKDG-GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDM 191
Y +++ KHA +FG Q + A R + L LR+R
Sbjct: 518 YYAAVEAKKERMSKHAQ--------TFGAKQPTHQGGPAQDRGVY---LSLLASLRTRAQ 566
Query: 192 LPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAI---KG 247
LP + F F+R CD L +L E SE+ L L+R + R+ P +
Sbjct: 567 LPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSE 626
Query: 248 LL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPART V S+ K
Sbjct: 627 LLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDG 686
Query: 307 SGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQF 363
S L E QMAGRAGRRG+D G V+L+ + P E A+ +++ L SQF
Sbjct: 687 STFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRMMMGKPSQLQSQF 744
Query: 364 TASYGMVLNLL 374
+Y M+LNLL
Sbjct: 745 RLTYTMILNLL 755
Score = 50 (22.7 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 1078 GRVACAM-SSHELLLTELMFDNALSALRPEEIAALLSGLVCQ 1118
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 447 (162.4 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 124/362 (34%), Positives = 183/362 (50%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V +V DEVHY+ D SRG VWEE II P +V + LSAT+ NA E A WI +IH +
Sbjct: 290 EVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPC 349
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y + + ++DEKG +S + S
Sbjct: 350 HVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPASSDSG 409
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R N + + N HQ K I I V + +++ + P I F F
Sbjct: 410 RGNKKGKTNKGRN--------HQDGKGDIYKI----VKMI-----YMKKYN--PVIVFSF 450
Query: 200 NRRGCDAAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
++R C++ + + DE S ++ +L P+A RE P IK +L +G+
Sbjct: 451 SKRDCESLALKMSKLDFNTDEERNSLTQIFYNAIELL-PEADRELPQIKNILPLLKRGIG 509
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K G ++
Sbjct: 510 IHHSGLLPILKEIIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVS 569
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLN 372
E QM+GRAGRRG+D+RG +V++ + + K + G + L S F Y M+LN
Sbjct: 570 GGEYIQMSGRAGRRGLDDRG-IVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 628
Query: 373 LL 374
L+
Sbjct: 629 LM 630
Score = 80 (33.2 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 44/228 (19%), Positives = 98/228 (42%)
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDT-VKFTEEKIKRLKARSKRLTKRIEQIEP 728
+++K+ K+ L KI + ++ D K+T K+ L + K+L ++I Q +
Sbjct: 852 DDFKKLLQKIDILDSKIV-SNPLNNSARLDDLYAKYTA-KVD-LNNQIKKLEEQIFQAKS 908
Query: 729 SGWKEFLRISNVIHETRALDI--NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKP 786
+ ++SN+ + L+ + +V+ G AA + +EL + +L + +L P
Sbjct: 909 I--IQLDQLSNMKRVLKKLEFTGSEEVVELKGRVAAELSTGDELMITELLFSGFFNELTP 966
Query: 787 AQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDE-HRSSFLELQEKHGVEIP 845
Q+ + ++ + + L K + EP+ + N + + + S LE+ EK +E
Sbjct: 967 QQICGLLSAFIFQERAKELPKLKPELAEPAKVIHETANKIAKISKQSGLEIVEKDYIEQ- 1025
Query: 846 CCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQI 893
+ +V W++G ++ + I+L+ Q+
Sbjct: 1026 --FNLALVEVVFVWSNGASFSSICKMTDIYEGSIIRALRREIELIKQL 1071
Score = 71 (30.1 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 34/169 (20%), Positives = 74/169 (43%)
Query: 336 VLVQTPYEGAEECCKLLFAGVEPLVS--QFTASY-GMVLNLLAGAKVMHLSNESDDMKAL 392
+ + +P ++ +L G+ P S Q A + + L+ + + L DD K+
Sbjct: 759 MFIDSPVNLIKKFNPMLPEGIRPAKSGEQTRAEFISITLSSIEKISTVRL-RVPDDYKSS 817
Query: 393 QAGRSLEEARKLVEQSFGNYVGS----NVMLAAKDELCKIQKETDVLTSEISDDAIDRKS 448
A R+L + K + + + + M D+ K+ ++ D+L S+I + ++ +
Sbjct: 818 TAKRTLVKTLKDLPKRLPDGIPLIDPVQSMKITDDDFKKLLQKIDILDSKIVSNPLNNSA 877
Query: 449 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFE 497
R A Y +L ++K + + + ++L + S +K +LK E
Sbjct: 878 RLDDLYAKYTAKVDLNNQIKKLEEQIFQAKSIIQLDQLSNMKRVLKKLE 926
Score = 37 (18.1 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 694 EYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEP 728
+YK T K T +K LK KRL I I+P
Sbjct: 813 DYKS--STAKRT--LVKTLKDLPKRLPDGIPLIDP 843
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 431 (156.8 bits), Expect = 4.4e-40, Sum P(3) = 4.4e-40
Identities = 124/361 (34%), Positives = 179/361 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI +IH +
Sbjct: 282 EVGWVVFDEIHYMRDATRGVVWEETIIMLPDKVRYVFLSATIPNAFQFAEWIAKIHRQAC 341
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y + + ++DEKG +K +++ S D S
Sbjct: 342 HVVYTDFRPTPLQNYVFPAGGDGIYIMVDEKGVFREKK----FMEAIGSIAGKNDDDDSM 397
Query: 140 RRNSRKHADMNS-NNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFI 198
R K + + N V SK I I + ++ +H P I F
Sbjct: 398 PRQKGKGKNKKAVKNTVPD------SKADITKI----IKMIMRRAYH-------PVIVFN 440
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVA 253
F++R C+ + N E E VE + L + P I+ LL KG+
Sbjct: 441 FSKRECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSEEDQGLPQIQHLLPLLKKGIG 500
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K IE LFQ L+KV+FATET + G+NMPA+T V S + K LT
Sbjct: 501 VHHSGLLPILKETIEILFQENLIKVLFATETFSIGLNMPAKTVVFSQVKKFDGVKERPLT 560
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLN 372
+E QM+GRAGRRG+D+RG +V++ + E K + G + L S F Y M+LN
Sbjct: 561 PSEYIQMSGRAGRRGLDDRG-IVIMMIDDKLDPETAKGMVCGQQDRLNSAFHLGYNMILN 619
Query: 373 L 373
L
Sbjct: 620 L 620
Score = 85 (35.0 bits), Expect = 4.4e-40, Sum P(3) = 4.4e-40
Identities = 56/264 (21%), Positives = 106/264 (40%)
Query: 670 ENYKEQRTKVARLKKKIART--EGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR--IEQ 725
+++K+ K+ L+ ++ G ++ D K E ++K + + K I Q
Sbjct: 847 DSFKKLMRKIEVLESRLLSNPLHGSPNLPELWDKYKIKTELTSQIKETKRAINKSYSIAQ 906
Query: 726 I-EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDL 784
+ E LR N I+E + + +V + T +EL ++ +L N +L
Sbjct: 907 LDELKSRMRVLRRLNFINENEVVQMKARVACEISSTEG-----HELVISELLFNGFFNEL 961
Query: 785 KPAQLAAVCASLV----SEG--IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQE 838
+P AA+ + V EG +K L K I+ + T+ + R S L++ +
Sbjct: 962 EPEVCAAILSCFVFDEKMEGTPLKEDLDKLVREIHAQAKTIARI------SRESKLDVSD 1015
Query: 839 KHGVEIPCCLDSQFSGMVEAWASGLTWREMMMXXXXXXXXXXXXXXXTIDLLAQIPKLPD 898
+ ++ L Q + V AWA G + E+ +LL Q+ +
Sbjct: 1016 E---QVVGNLKWQLTETVLAWAKGRPFAEICKMTNAYEGSLVRIMRRLEELLRQMAEAGK 1072
Query: 899 V--DQRLQKNAVDASNVMDRPPIS 920
V + LQK A +++ R +S
Sbjct: 1073 VMGSEMLQKKFEKALSLISRDVVS 1096
Score = 42 (19.8 bits), Expect = 4.4e-40, Sum P(3) = 4.4e-40
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 404 LVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEM 460
++E+ F + ++ + A + +L ++Q++ D + D + R EA K+M
Sbjct: 631 MLERCFYQFQNASSVPALEKKLIELQQQRDAMVIPDESTVKDYHTVRQQIEAYKKDM 687
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 17/91 (18%), Positives = 31/91 (34%)
Query: 382 LSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISD 441
+ + D + Q LEE ++ M D K+ ++ +VL S +
Sbjct: 806 MPKDMDHLGKSQVSHGLEEVQRRFPDGVPILDPIENMGIKDDSFKKLMRKIEVLESRLLS 865
Query: 442 DAIDRKSRRLLSEAAYKEMANLQEELKAEKR 472
+ + YK L ++K KR
Sbjct: 866 NPLHGSPNLPELWDKYKIKTELTSQIKETKR 896
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 341 (125.1 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 84/215 (39%), Positives = 120/215 (55%)
Query: 179 VIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYP 237
V+ + + S D L I F F+R+ C++ L+D + + E V+ + L P
Sbjct: 361 VLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSP 420
Query: 238 DAVREPAIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPA 293
+ + P I +L +G+ HH+G +PI K IE LF GLVKV+FATET + G+NMPA
Sbjct: 421 EDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPA 480
Query: 294 RTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLF 353
RT V +S K S +TS E QMAGRAGRRG D+RG V+L+ A++ +++
Sbjct: 481 RTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIK 540
Query: 354 AGVEPLVSQFTASYGMVLNLLA--GAKVMHLSNES 386
+PL SQF +Y MVLNL+ G V + N S
Sbjct: 541 GATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNS 575
Score = 152 (58.6 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 44/152 (28%), Positives = 68/152 (44%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK-T 81
+V +V DE+HY+ D RG VWEE II K ++ LSAT+ NA + A W+ I +
Sbjct: 231 EVGWVVYDEIHYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPV 290
Query: 82 ELITSSRRPVPLT-WYFSTK-TALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL W + + +++ KG+ K L+T+ R
Sbjct: 291 NVVYTDYRPTPLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSA-GSFNKR 349
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
R D N I+ S S + +N I
Sbjct: 350 RTGGGTQGDSNVLKIIRSVA----SNDGLNCI 377
Score = 63 (27.2 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 44/203 (21%), Positives = 83/203 (40%)
Query: 675 QRTKVARLKK-KIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKE 733
+++ RL+ + + + K+ KK + + +++ LKA K + + E + K
Sbjct: 782 EKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELNNRKR 841
Query: 734 FLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVC 793
LR + AL + G A + +EL L +L I L AQ AA+
Sbjct: 842 VLRRLGYLGNDDALVLK-------GSVACELSASDELILTEMLLKGIFNTLDVAQTAALL 894
Query: 794 ASLVSEG------IKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEI-PC 846
+ V + + L S ++E + NV V +E + +E +K+ P
Sbjct: 895 SCFVFQDKCAAPKLATELQTCLSELHEQAR---NVAKVSNECKMEVME--DKYVSSFNPG 949
Query: 847 CLDSQFSGMVEAWASGLTWREMM 869
+D +V W +G T+ E++
Sbjct: 950 LMD-----VVYQWVNGATFSEIV 967
Score = 41 (19.5 bits), Expect = 4.6e-37, Sum P(3) = 4.6e-37
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 687 ARTEGFKEYKKIVDTVKFTEEK---IKRLKARSKRLTKRIE 724
A T+ F ++D ++ E K +K L AR K L R+E
Sbjct: 750 AATKRFGNQIPLLDPIQDMEIKTVEMKELIAREKSLEGRLE 790
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 442 (160.7 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 138/399 (34%), Positives = 197/399 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHY+++ RG VWEE+II P+ V II LSATV N ELA W+G K
Sbjct: 368 DLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGSTKKRKV 427
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRR 141
+I++ +RPVPLT + T GK + + L ++ K Y G +
Sbjct: 428 YVISTLKRPVPLTHFLYTGAG--------GKSRD-----DIFLLVDAQGK-YLQGNYEKA 473
Query: 142 NSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNR 201
RK +M + G +N +NA ++ Q I + LR +M+P + F +R
Sbjct: 474 VERKK-EMQGK----AKGGGGGPRNHLNA-KQEQYTW-IGLIDFLRRSNMMPVVAFTLSR 526
Query: 202 RGCDAAVQYLEDCNLLDECEMSEVE-LALKRFRILYPDAVREPAI---KGLL-KGVAAHH 256
CD+ + L+ +L E E V+ L+ L P P + K L +G+ HH
Sbjct: 527 NRCDSNLAALQSVDLNTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHH 586
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LPI K +E LFQ GLVK++FATET A G+NMPART V S K L E
Sbjct: 587 SGILPILKEIVEMLFQNGLVKLLFATETFAMGVNMPARTVVFDSCKKFDGLEMRNLKPGE 646
Query: 317 LFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
QMAGRAGRRG D G +++ + + E ++ E L SQF Y ++L L
Sbjct: 647 YIQMAGRAGRRGHDETGTAIIMCKGSVPPSMELRPMILGLPEKLQSQFILRYAVILTCLR 706
Query: 376 --GAKV---MHLSNESDDMKALQAGRSLEEARKLVEQSF 409
KV M S + ++K LQ ++ R L E F
Sbjct: 707 IESIKVEDIMKFSFKEFNLK-LQLPTQQKQLR-LAEDKF 743
Score = 63 (27.2 bits), Expect = 3.4e-39, Sum P(2) = 3.4e-39
Identities = 27/108 (25%), Positives = 54/108 (50%)
Query: 691 GFK-EYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDI 749
GF+ E+ K+ + + E I+ L R K + + + P ++ V+ + +D
Sbjct: 972 GFEQEFAKVYER-RMLEIHIEEL--RFKNSARNLT-LYP----DYCNKLKVLRALKYIDE 1023
Query: 750 NTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
+V G+ A + G+NEL + ++ + DL+PA++AA+ + LV
Sbjct: 1024 LDEVTLK-GKVACEM-GQNELLITELILCNMFNDLEPAEIAALLSGLV 1069
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 435 (158.2 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 118/361 (32%), Positives = 184/361 (50%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V +V DE+HY+ D +RG VWEE II P +V+ + LSAT+ NA + A WI ++H +
Sbjct: 258 EVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLSATIPNAMQFAEWITKMHNQPC 317
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL YF + + ++DEKG ++ + D ++
Sbjct: 318 HVVYTDFRPTPLQHYFFPAGSEGMHLIVDEKGVFREENFQKAMSSIADKKGDDPADALAK 377
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
R+ K +N G + K+ I I V ++ L+S + P I F F
Sbjct: 378 RKGKGKDKKLNKG------GTQE--KDDIYKI----VKMIM-----LKSLN--PVIVFSF 418
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKR-FRILYPDAVREPAIKGLL----KGVAA 254
++R C+ ++ D+ E V +L + P I+ +L +G+
Sbjct: 419 SKRECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLLRRGIGV 478
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +S+ K + +T
Sbjct: 479 HHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFSQRWVTP 538
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP-LVSQFTASYGMVLNL 373
+E QM+GRAGRRG+D+RG +V++ E K + G + L S F Y M+LNL
Sbjct: 539 SEFVQMSGRAGRRGLDDRG-IVIMMIGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNL 597
Query: 374 L 374
+
Sbjct: 598 M 598
Score = 67 (28.6 bits), Expect = 4.9e-39, Sum P(2) = 4.9e-39
Identities = 33/136 (24%), Positives = 61/136 (44%)
Query: 670 ENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKI---KRLKARSKRLTK--RIE 724
+ +K+ K+ L+ ++ T ++ + + EK+ ++KA K++++ I+
Sbjct: 818 DEFKKTLRKIEVLESRLV-TNPLHNSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAIQ 876
Query: 725 QI-EPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLD 783
Q+ E K LR I+E + + +V A I +EL L+ +L N
Sbjct: 877 QLDELKCRKRVLRRFGFINEAEVVQLKARV-------ACEISTGDELMLSELLFNGFFNK 929
Query: 784 LKPAQLAAVCASLVSE 799
L P Q AAV + V E
Sbjct: 930 LTPEQAAAVLSVFVFE 945
Score = 59 (25.8 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 24/112 (21%), Positives = 44/112 (39%)
Query: 385 ESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAI 444
+S D + G+ +E+ +K M DE K ++ +VL S + + +
Sbjct: 781 QSKDSRT-DMGKKVEQIKKRFPDGIAVLDPIEDMGIKDDEFKKTLRKIEVLESRLVTNPL 839
Query: 445 DRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDF 496
R Y E +L ++KA K+ +E +L K +L+ F
Sbjct: 840 HNSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAIQQLDELKCRKRVLRRF 891
Score = 45 (20.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 358 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNV 417
P + + Y L+L G K+ + + A+Q L+ RK V + FG ++
Sbjct: 843 PRLEELYEQYAEKLDL--GNKIKATKKKISEGMAIQQLDELK-CRKRVLRRFG-FINEAE 898
Query: 418 MLAAKDEL-CKIQKETDVLTSEI 439
++ K + C+I +++ SE+
Sbjct: 899 VVQLKARVACEISTGDELMLSEL 921
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 289 (106.8 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 70/196 (35%), Positives = 106/196 (54%)
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PA 244
+ R+ P I F F+++ C+ + + ++ E + VE ++ ++ PA
Sbjct: 454 IMERNYQPVIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPA 513
Query: 245 IKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
+ +L +G+ HHAG LPI K IE LFQ G +K +FATET + G+NMPA+T + +S
Sbjct: 514 VINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTS 573
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAG-VEP 358
+ K G ++ E QM+GRAGRRG+D RG V+L V E A K + G +
Sbjct: 574 VRKFDGEGMRWISGGEYIQMSGRAGRRGLDERGIVILMVDEKMEPA--IAKGMVKGQADR 631
Query: 359 LVSQFTASYGMVLNLL 374
L S F Y M+LN+L
Sbjct: 632 LTSSFWIGYSMLLNML 647
Score = 195 (73.7 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 47/136 (34%), Positives = 67/136 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HYL D RG VWEE II P V+ + LSAT+ NA E A WI +IH +
Sbjct: 317 EVSWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAREFAAWIAKIHKQPC 376
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP+PL Y S L ++DE G + L E+ + G SR
Sbjct: 377 HVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLSNLQQPEMGG-QSGASR 435
Query: 140 RRNSRKHADMNSNNIV 155
+R + IV
Sbjct: 436 KRGGGNKGPSDCYKIV 451
Score = 74 (31.1 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 47/207 (22%), Positives = 87/207 (42%)
Query: 671 NYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSG 730
N+K+ K+ L+ + + T F + I + E+K + K+L K+I+ +
Sbjct: 869 NFKKLIKKIETLESRFSSTACFND-TDIEERCNLLEKK-NEITKEIKQLQKQIKSGDEVI 926
Query: 731 WKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLA 790
K+ LR I + V+ G A I +EL ++ +L + DL Q
Sbjct: 927 LKDDLRSMKRILTRLGYITDDGVVALKGRVACEISAGDELVISELLFAGLFNDLSVEQCV 986
Query: 791 AV--CASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEK---HGVEIP 845
AV C +EG NN I +P ++ + V+ + S + + ++ V+
Sbjct: 987 AVFSCFVFQNEG-SANNDVNNPKI-KPD--LVPLYRVIRDTASKVVTVSQECKLTSVDEK 1042
Query: 846 CCLDS---QFSGMVEAWASGLTWREMM 869
L S F + AWASG ++ +++
Sbjct: 1043 TYLASFNPNFMDVTFAWASGASFADIV 1069
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 425 (154.7 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
Identities = 116/361 (32%), Positives = 177/361 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DEVHY+ D RG VWEE II P +V+ + LSAT+ NA E A WI +IH +
Sbjct: 255 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC 314
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ ++ RP PL Y + + ++DEK N+ + S D
Sbjct: 315 HIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREE----NFQKAMASISNQIGD---- 366
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIF 199
D NS + GQ S + + +++ +W + P I F F
Sbjct: 367 --------DPNSTDSRGKKGQ-TYKGGSAKGDAKGDIYKIVKMIWKKKYN---PVIVFSF 414
Query: 200 NRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVAA 254
++R C+ + + + E + L P+ RE P IK +L +G+
Sbjct: 415 SKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 474
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH+G LPI K IE LFQ G +KV+FATET + G+NMPA+T V +S+ K ++
Sbjct: 475 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 534
Query: 315 NELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAG-VEPLVSQFTASYGMVLNL 373
E QM+GRAGRRG+D+RG +V++ + + K + G + L S F Y M+LNL
Sbjct: 535 GEYIQMSGRAGRRGLDDRG-IVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 593
Query: 374 L 374
+
Sbjct: 594 M 594
Score = 68 (29.0 bits), Expect = 5.0e-38, Sum P(2) = 5.0e-38
Identities = 22/100 (22%), Positives = 42/100 (42%)
Query: 395 GRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRLLSE 454
G+SL E + M ++ K+ K+ DVL +++S + + R
Sbjct: 791 GKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELY 850
Query: 455 AAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 494
Y +L E++K KR +E + ++L K +L+
Sbjct: 851 GKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLR 890
Score = 65 (27.9 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 43/208 (20%), Positives = 79/208 (37%)
Query: 667 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTE--EKIKR---LKARSKRLTK 721
D V+N K + +L KKI + ++++ E K R L K+L +
Sbjct: 809 DPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKR 868
Query: 722 RIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKIL 781
+I + + + LR + +I G A I +EL L ++ N
Sbjct: 869 KISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNF 928
Query: 782 LDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVI-NVLDEHRSSFLELQEKH 840
+LKP Q AA+ + + + + EP + + + + S +E+ EK
Sbjct: 929 NELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKD 988
Query: 841 GVEIPCCLDSQFSGMVEAWASGLTWREM 868
VE + +V W G T+ ++
Sbjct: 989 YVE---SFRHELMEVVYEWCRGATFTQI 1013
Score = 51 (23.0 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 660 HMSFEYHDAVENYKEQRTKVARLKK-----KIARTEGFKEYKKIVDTVKFTEEKIKRL 712
H F++ + + + K+A LKK ++ E KEY +I +K E ++++
Sbjct: 607 HSFFQFQNVI-SVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQV 663
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 444 (161.4 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 128/363 (35%), Positives = 182/363 (50%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHG-KT 81
D++ ++ DEVHYL+D+ RG VWEE+II P V+++ LSATV+N E A WIG+
Sbjct: 539 DIEWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATVSNPLEFAQWIGRTKQLPI 598
Query: 82 ELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRR 140
+I +++RP+PL Y T + L ++D + + Y L ++ K GG
Sbjct: 599 YVIGTTKRPIPLEHYIHTPSNELFKIVDSNRNFLPSGYNSAYNSLYKTDNN--KGGGGGG 656
Query: 141 RNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFN 200
R Q Q S N I S ++I+TL + + LP I F F+
Sbjct: 657 RGGHNQ-------------QQQQRGGSGNNI--SGWSKLINTL---KDKQQLPVIIFSFS 698
Query: 201 RRGCDAAVQYL-EDCNLLDECEMSEVELALKR-FRILYPDAVREPAI---KGLL-KGVAA 254
+ C L + NL E S++ + +++ L D P I K LL +G+
Sbjct: 699 KNKCQEYAGSLGQSVNLTQGNEKSQIRVFIEQSLGRLCEDDKSLPQILQMKELLERGIGV 758
Query: 255 HHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTS 314
HH G LPI K +E LF + LVKV+FATET A G+NMPA+T V SS K L
Sbjct: 759 HHGGLLPIVKELVEILFSKSLVKVLFATETFAMGVNMPAKTVVYSSTRKHDGITFRDLIP 818
Query: 315 NELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
E QM+GRAGRRG+D G V++ P + E ++ L SQF +Y M+L
Sbjct: 819 GEYTQMSGRAGRRGLDKVGTVIITYWKDIPEQATIE--SMILGTPSRLNSQFRLTYNMIL 876
Query: 372 NLL 374
NLL
Sbjct: 877 NLL 879
Score = 46 (21.3 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 739 NVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLV 797
+++HE +D V G + I +L + ++ ++L+P+++ +V + L+
Sbjct: 1190 DILHELGYIDDENTVTLK-GRVSREINTCEDLVITELIFENAFINLEPSEVVSVLSCLI 1247
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 408 (148.7 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 133/399 (33%), Positives = 196/399 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V I+ DEVHY+ D RG VWEE I+ PK + + LSATV NA E A W+ ++H +
Sbjct: 173 EVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPC 232
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGK-HMNR-KLSLNYLQLSTSEVKPYKDGG 137
++ + RP PL Y + L ++DEK K H + + SLN L + T+E +D G
Sbjct: 233 HIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNAL-VPTNESDKKRDNG 291
Query: 138 SRRRN---SRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWH--LRSRDML 192
++ + + + +V Q Q + + + + + + L S D
Sbjct: 292 KFQKGLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEK 351
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGV 252
A+ IF +A+ L D D+ ++ +V IL P +K +G+
Sbjct: 352 DAVETIFA-----SAIDMLSD----DDKKLPQVS------NIL-------PILK---RGI 386
Query: 253 AAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQL 312
HH+G LPI K IE LFQ GL+K +FATET + G+NMPA+T V +++ K L
Sbjct: 387 GVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWL 446
Query: 313 TSNELFQMAGRAGRRGIDNRGHVVL-VQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
+S E QM+GRAGRRGID RG +L V E A +L + L S F SY M+L
Sbjct: 447 SSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAV-AKSMLKGSADSLNSAFHLSYNMLL 505
Query: 372 NLLA---GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
N L G L N +A +A LE+ K +E+
Sbjct: 506 NQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEE 544
Score = 72 (30.4 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 45/210 (21%), Positives = 87/210 (41%)
Query: 674 EQRTKVARLKKKIARTEGFK---EYKKIVDTVKFTEE-KIKRLK----ARSKRLTKRIEQ 725
+ + K + KK + R E + E KI + TE+ K+ ++K A+ K L K +
Sbjct: 728 DMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKKTVRS 787
Query: 726 IEPSGWKEFLRISNVIHETRALDINTQVIFPLGETAAAIRGENELWLAMVLRNKILLDLK 785
+K+ L+ + + V+ G+ A I EL L ++ + I D K
Sbjct: 788 STALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIFKDAK 847
Query: 786 PAQLAAVCASLVSEGIKVRLWKNN-SSIYEPSTTV-INVINVLDE-HRSSFLELQEKHGV 842
+L ++ + V W+ +P + + I + D R + ++L K +
Sbjct: 848 VEELVSLLSCFV--------WRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEI 899
Query: 843 EIPCCLDSQFSGMVEA---WASGLTWREMM 869
++ + S ++EA WA G + E+M
Sbjct: 900 DVESFVQSFRPDIMEAVYAWAKGSKFYEVM 929
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 308 (113.5 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 379 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 437
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 438 QVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 497
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 498 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 557
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 558 NSAFHLTYNMVLNLL 572
Score = 165 (63.1 bits), Expect = 2.0e-36, Sum P(2) = 2.0e-36
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 243 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 302
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 303 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 334
Score = 39 (18.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 389 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 426
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 306 (112.8 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 90/257 (35%), Positives = 146/257 (56%)
Query: 160 QHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLL 217
Q SK+S + S + ++I+ + L +R P I F F+++ C+ A Q+ + D N
Sbjct: 342 QENYSKSSKKVKKSSSLERIINMV--LSNR-YDPIIVFCFSKKECEINAHQFGKLDLNDT 398
Query: 218 DECEM-SEV-ELALKRFRILYPD-AVRE-PAIKGLL-KGVAAHHAGCLPIWKSFIEELFQ 272
+ E+ +E+ + A+ + + D +R+ ++ LL +G+ HH+G LPI K +E LFQ
Sbjct: 399 ENKELVTEIFDSAINQ--LSEEDRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQ 456
Query: 273 RGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNR 332
GLV+++FATET + G+NMPART + + K + + LTS E QM+GRAGRRGID +
Sbjct: 457 EGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTK 516
Query: 333 GH--VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 390
G V+L Q+ E A C L+ + L S F SYGM+LNL+ ++ +S E K
Sbjct: 517 GLSIVILDQSIDEQAARC--LMNGQADVLNSAFHLSYGMILNLM---RIEEISPEDILKK 571
Query: 391 ALQAGRSLEEARKLVEQ 407
+ +++E + E+
Sbjct: 572 SFYQFQNMESLPLIKEE 588
Score = 181 (68.8 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 44/128 (34%), Positives = 68/128 (53%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
+ ++ ++ DEVHY+ D RG VWEE +I P ++ I LSAT+ NA + A WI +IH +
Sbjct: 229 MHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQ 288
Query: 81 T-ELITSSRRPVPLTWYFSTKTA--LLPLLDEKGKHM--NRKLSLNYLQLSTSEVKPYKD 135
++ + RP PL + + A + L+DEK K N K L L ST + K
Sbjct: 289 PCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKS 348
Query: 136 GGSRRRNS 143
+++S
Sbjct: 349 SKKVKKSS 356
Score = 41 (19.5 bits), Expect = 3.4e-36, Sum P(3) = 3.4e-36
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 607 TMSLLLDKGEMLWEKLADSEF 627
T+SL L K E+L KL DS +
Sbjct: 776 TLSLSLRKLEILEPKLFDSPY 796
Score = 39 (18.8 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 431 ETDVLTSEISDDAIDRKSRRLLSEAAYKEMANL 463
E L +EI D AI++ S ++EM +L
Sbjct: 399 ENKELVTEIFDSAINQLSEEDRGLRQFEEMRSL 431
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 308 (113.5 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 379 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 437
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 438 QVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 497
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 498 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 557
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 558 NSAFHLTYNMVLNLL 572
Score = 165 (63.1 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 243 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 302
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 303 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 334
Score = 39 (18.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 389 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 426
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 435 (158.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 130/380 (34%), Positives = 183/380 (48%)
Query: 5 IVVFSCSV--GMVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLS 61
I+V + + M+ S L +V ++ DE+HY+ D RG +WEE II P V+ I LS
Sbjct: 339 IIVMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLS 398
Query: 62 ATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLN 121
AT+ N + A W+ I S + T Y T PL +H S
Sbjct: 399 ATIPNGIQFAEWVSSIK-------SQACHIVYTDYRPT-----PL-----QHYIYPTSSE 441
Query: 122 YLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF-GQHQLSKNSINAIRRSQVPQVI 180
+ L E K +K + N K ++ + TS HQ N R +
Sbjct: 442 SVFLICDENKDFK-----KDNFIKAVNVIKEKMNTSEENHHQQHINKYTKKMRKTTYDIE 496
Query: 181 DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEV-ELALKRFRILYPDA 239
+ SR+ P I F F+++ C+ + +L + E + EL RIL D
Sbjct: 497 KIVQMCHSRNYTPLIIFAFSKKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDD 556
Query: 240 VREPAIKG----LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPART 295
P ++ LL+G+ HH G LPI K IE +FQ L+KV+F+TET + GINMPA+T
Sbjct: 557 RSLPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFSTETFSMGINMPAKT 616
Query: 296 AVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV-QTPYEGAEECCKLLFA 354
V +SL+K + +TS E QMAGRAGRRG+D+RG V+++ TP E KL
Sbjct: 617 VVFTSLTKFDGLEKRLITSGEYIQMAGRAGRRGLDDRGIVIIMLDTPLHW-REAHKLFVG 675
Query: 355 GVEPLVSQFTASYGMVLNLL 374
LVSQF Y M+LNLL
Sbjct: 676 EANRLVSQFHLGYNMILNLL 695
Score = 37 (18.1 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 612 LDKGEMLWEKLADSEFGGLWCMEGSL 637
L G +L+ D +G C+EG L
Sbjct: 871 LSLGRLLYIIQEDLRWGWCICIEGQL 896
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 308 (113.5 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 90/262 (34%), Positives = 135/262 (51%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 379 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 437
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 438 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 497
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 498 NARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 557
Query: 360 VSQFTASYGMVLNLLAGAKV---MHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV--- 413
S F +Y MVLNLL ++ L + +A + E K E+ + V
Sbjct: 558 NSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPN 617
Query: 414 GSNVMLAAK--DELCKIQKETD 433
NV++ K +L K+ KE +
Sbjct: 618 EENVVIYYKIRQQLAKLGKEIE 639
Score = 165 (63.1 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 243 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 302
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 303 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 334
Score = 46 (21.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/113 (21%), Positives = 48/113 (42%)
Query: 380 MHLSNESDDMKALQAGRSLEE--ARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTS 437
+ + + ++K + ++E RK V + G S+V+ C+I ++L +
Sbjct: 828 LDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLT 887
Query: 438 EIS-----DDAIDRKSRRLLSEAAYKE----MANLQEELKAEKRFRTELRRRM 481
E+ +D ++ LLS ++E M L E+L R E +R+
Sbjct: 888 EMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRI 940
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 404 (147.3 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 113/361 (31%), Positives = 178/361 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P + + LSAT+ NA + A WI +IH +
Sbjct: 304 EVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPC 363
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
++ + RP PL Y S + ++DEK N+ + ++ ++ K G
Sbjct: 364 HVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFREE----NFQRAMSALME--KQGDDP 417
Query: 140 RRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRR-SQVPQVIDTLWHLRSRDMLPAIWFI 198
+ K G + K ++ S + +++ + ++ P I F
Sbjct: 418 AAMATK-------------GNAKKGKTGKGGVKGPSDIYKIVKMIM---VKNYNPVIVFS 461
Query: 199 FNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE-PAIKGLL----KGVA 253
F++R C+A + ++ D+ E V + RE P I+ +L +G+
Sbjct: 462 FSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIG 521
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLT 313
HH+G LPI K IE LFQ GL+KV+FATET + G+NMPA+T V +++ K ++
Sbjct: 522 IHHSGLLPILKEVIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWIS 581
Query: 314 SNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNL 373
E QM+GRAGRRG+D+RG V+L+ +L + L S F SY M+LNL
Sbjct: 582 GGEYIQMSGRAGRRGLDDRGIVILMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNL 641
Query: 374 L 374
L
Sbjct: 642 L 642
Score = 65 (27.9 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 45/211 (21%), Positives = 80/211 (37%)
Query: 667 DAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQI 726
D VEN + +L KK+ E + + EEK R L + ++ +
Sbjct: 852 DPVENMNIKEPTFIKLMKKVNILES-RLLSNPLHNFSELEEKYAEY-LRKLALLEEVKDL 909
Query: 727 EP--SGWKEFLRISNVIHETRAL-----DINTQVIFPLGETAAAIRGENELWLAMVLRNK 779
+ S + +++ + R L + VI G A I + L L ++ N
Sbjct: 910 KKKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLLTELIFNG 969
Query: 780 ILLDLKPAQLAAVCASLV-SEGIKVRLWKNNSSIYEPSTTVINVIN-VLDEHRSSFLELQ 837
+ DL P Q AA+ + LV E +V + + P + + + + S EL
Sbjct: 970 MFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELN 1029
Query: 838 EKHGVEIPCCLDSQFSGMVEAWASGLTWREM 868
E+ V +V AWA G ++ ++
Sbjct: 1030 EEEYVN---SFKPSLMEVVYAWAHGASFAQI 1057
Score = 64 (27.6 bits), Expect = 3.3e-35, Sum P(2) = 3.3e-35
Identities = 22/103 (21%), Positives = 44/103 (42%)
Query: 392 LQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRL 451
L G++L E ++ + M + K+ K+ ++L S + + + S
Sbjct: 831 LTVGKALSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELE 890
Query: 452 LSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 494
A Y L EE+K K+ ++ R M+L ++ K +L+
Sbjct: 891 EKYAEYLRKLALLEEVKDLKKKLSKARSIMQLDELNSRKRVLR 933
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 306 (112.8 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 382 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 440
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 441 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 500
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 501 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 560
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 561 NSAFHLTYNMVLNLL 575
Score = 165 (63.1 bits), Expect = 3.7e-35, Sum P(2) = 3.7e-35
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 246 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 305
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 306 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 337
Score = 39 (18.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 392 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 429
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 306 (112.8 bits), Expect = 6.2e-35, Sum P(3) = 6.2e-35
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 280 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 338
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 339 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 398
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 399 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 458
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 459 NSAFHLTYNMVLNLL 473
Score = 165 (63.1 bits), Expect = 6.2e-35, Sum P(3) = 6.2e-35
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 144 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 203
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 204 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 235
Score = 43 (20.2 bits), Expect = 6.2e-35, Sum P(3) = 6.2e-35
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 400 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 454
+ RK V + G S+V+ C+I ++L +E+ +D ++ LLS
Sbjct: 751 KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC 810
Query: 455 AAYKE----MANLQEELKAEKRFRTELRRRM 481
++E M L E+L R E +R+
Sbjct: 811 FVFQENSSEMPKLTEQLAGPLRQMQECAKRI 841
Score = 39 (18.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 290 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 327
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 306 (112.8 bits), Expect = 8.2e-35, Sum P(3) = 8.2e-35
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 381 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 439
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 440 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 499
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 500 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 559
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 560 NSAFHLTYNMVLNLL 574
Score = 165 (63.1 bits), Expect = 8.2e-35, Sum P(3) = 8.2e-35
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 245 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 304
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 305 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 336
Score = 44 (20.5 bits), Expect = 8.2e-35, Sum P(3) = 8.2e-35
Identities = 27/115 (23%), Positives = 48/115 (41%)
Query: 400 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 454
+ RK V + G S+V+ C+I ++L +E+ +D ++ LLS
Sbjct: 852 KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC 911
Query: 455 AAYKE----MANLQEELKAEKRFRTELRRRMELKRFSALKDILKD-FENGHLPFL 504
++E M L E+L R E +R+ A +I ++ + N P L
Sbjct: 912 FVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLNSFKPHL 966
Score = 39 (18.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 428
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 306 (112.8 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 381 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFSNAIDCLSDEDKKLP 439
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 440 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 499
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 500 NARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 559
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 560 NSAFHLTYNMVLNLL 574
Score = 165 (63.1 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 245 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 304
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 305 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 336
Score = 43 (20.2 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 400 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 454
+ RK V + G S+V+ C+I ++L +E+ +D ++ LLS
Sbjct: 852 KCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSC 911
Query: 455 AAYKE----MANLQEELKAEKRFRTELRRRM 481
++E M L E+L R E +R+
Sbjct: 912 FVFQENSSEMPKLTEQLAGPLRQMQECAKRI 942
Score = 39 (18.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAI 428
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 295 (108.9 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 76/195 (38%), Positives = 108/195 (55%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E ++ E E+ L + + P
Sbjct: 374 IMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVE-EVFNNATDCLSDEDKKLP 432
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 433 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFT 492
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
S K ++S E QM+GRAGRRG+D RG V+ + +LL +PL
Sbjct: 493 SARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAVGKQLLKGSADPL 552
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 553 NSAFHLTYNMVLNLL 567
Score = 164 (62.8 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 36/93 (38%), Positives = 52/93 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSATV NA + A WI +H +
Sbjct: 233 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLSATVPNARQFAEWICHLHKQPC 292
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGK 112
++ + RP PL Y + L ++DE G+
Sbjct: 293 HVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGE 325
Score = 43 (20.2 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 27/115 (23%), Positives = 48/115 (41%)
Query: 400 EARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEIS-----DDAIDRKSRRLLSE 454
+ RK V + G S+V+ C+ ++L +E+ +D ++ LLS
Sbjct: 844 KCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTAEQATALLSC 903
Query: 455 AAYKEMAN----LQEELKAEKRFRTELRRRMELKRFSALKDILKD-FENGHLPFL 504
++E AN L E+L R E +R+ A ++ +D + N P L
Sbjct: 904 FVFQENANEMPKLTEQLGGPLRQMQECAKRIAKVSAEAKLEVDEDSYLNQFRPHL 958
Score = 43 (20.2 bits), Expect = 6.6e-07, Sum P(3) = 6.6e-07
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGN 411
+ S + + ALQ + + +E +KLVE+ F N
Sbjct: 384 IFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN 419
Score = 38 (18.4 bits), Expect = 6.8e-33, Sum P(3) = 6.8e-33
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 682 LKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVI 741
L+K + + ++ +VD +K EE+ ++ + +I K I I
Sbjct: 578 LEKSFYQFQHYRAVPGVVDRMKKLEEEYNAIRIPKEESVVTYYKIRQQLAKLGKEIEEFI 637
Query: 742 HETR 745
H+ R
Sbjct: 638 HKPR 641
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 393 (143.4 bits), Expect = 8.4e-33, P = 8.4e-33
Identities = 110/362 (30%), Positives = 175/362 (48%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGK 80
L +V ++ DE+HY+ D RG VWEE II+ P ++++ LSAT++NA E A WI +H +
Sbjct: 185 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICYLHKQ 244
Query: 81 T-ELITSSRRPVPLTWY-FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGS 138
++ + RP PL Y F L L+ + + +++++ + KP + G
Sbjct: 245 PCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQFRED---SFVKMQDTFPKPKSNDGK 301
Query: 139 RRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLR-SRDMLPAIWF 197
+ N + G + K + R P +I + + L
Sbjct: 302 KSANGKSGGRGAKGG--GGPGDSDVYKIVKMIMERKFEPVIIFSFSRRECEQHALSMSKL 359
Query: 198 IFNRRGCDAAVQYLEDC-NLLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHH 256
FN D + +E N +C ++E + +L ++ P L +G+A HH
Sbjct: 360 DFNT---DEEKEVVEQVFNNAMQC-LNEEDRSLPAIELMLPL---------LQRGIAVHH 406
Query: 257 AGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNE 316
+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +++ K + S E
Sbjct: 407 SGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGE 466
Query: 317 LFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAG 376
QM+GRAGRRG D RG +++ ++ PL+S F SY +LNLL+
Sbjct: 467 YIQMSGRAGRRGKDERGICIIMIDEQMEMNTLRDMMLGKPAPLLSTFRLSYYTILNLLSR 526
Query: 377 AK 378
A+
Sbjct: 527 AE 528
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 291 (107.5 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 72/195 (36%), Positives = 109/195 (55%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+ A+Q + D N DE ++ + E+ +L + R P
Sbjct: 397 IMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVD-EVFNNAMDVLTEEDRRLP 455
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A G+NMPART + +
Sbjct: 456 QVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFT 515
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
+ K ++S E QMAGRAGRRG+D++G V+L+ ++ +P+
Sbjct: 516 APRKFDGKKFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPI 575
Query: 360 VSQFTASYGMVLNLL 374
S F +Y MVLNLL
Sbjct: 576 NSAFHLTYNMVLNLL 590
Score = 168 (64.2 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 34/93 (36%), Positives = 54/93 (58%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V +V DE+HY+ D RG VWEE +I P V+ + LSAT+ NA + A W+ +H +
Sbjct: 257 EVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPC 316
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKGK 112
++ + RP PL Y + + ++DEKG+
Sbjct: 317 HVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQ 349
Score = 37 (18.1 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 814 EPSTTVINVINVLDEHR-SSFLELQ---EKHG 841
E T +N + + DEH +S+ ++ ++HG
Sbjct: 622 EQKTLELNKLTIKDEHNIASYHHIRSQLDQHG 653
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 268 (99.4 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 64/159 (40%), Positives = 94/159 (59%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 381 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 439
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 440 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 499
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ K ++S E QM+GRAGRRG+D+RG V+L+
Sbjct: 500 NARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 538
Score = 165 (63.1 bits), Expect = 5.0e-31, Sum P(2) = 5.0e-31
Identities = 36/92 (39%), Positives = 51/92 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
+V ++ DE+HY+ D RG VWEE II P V + LSAT+ NA + A WI +H +
Sbjct: 245 EVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPC 304
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 305 HVIYTDYRPTPLQHYIFPAGGDGLHLVVDENG 336
Score = 39 (18.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 379 VMHLSNESDDMKALQAGR---SLEEARKLVEQSFGNYV 413
+ S + + ALQ + + +E +K+VE+ F N +
Sbjct: 391 IFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAI 428
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 268 (99.4 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 64/159 (40%), Positives = 94/159 (59%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 125 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 183
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 184 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 243
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ K ++S E QM+GRAGRRG+D+RG V+L+
Sbjct: 244 NARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILM 282
Score = 129 (50.5 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 31/80 (38%), Positives = 42/80 (52%)
Query: 35 LSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT-ELITSSRRPVPL 93
+ D RG VWEE II P V + LSAT+ NA + A WI +H + +I + RP PL
Sbjct: 1 MRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPL 60
Query: 94 TWYF--STKTALLPLLDEKG 111
Y + L ++DE G
Sbjct: 61 QHYIFPAGGDGLHLVVDENG 80
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 319 (117.4 bits), Expect = 8.3e-27, Sum P(2) = 8.3e-27
Identities = 93/274 (33%), Positives = 140/274 (51%)
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRF--RILYP 237
ID + +++S ++LPA+ F+F+++ C+ L + + E SE+ + + R R+
Sbjct: 568 IDLVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGRLKKE 627
Query: 238 DAVRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMP 292
D RE P I + +L +G+A HH G LPI K IE LF + LVKV+FATET A G+N+P
Sbjct: 628 D--RELPQILKIREMLGRGIAVHHGGLLPIVKECIEILFAKSLVKVLFATETFAMGLNLP 685
Query: 293 ARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
RT + SS+ K L E QM+GRAGRRG+D G V+++ + K +
Sbjct: 686 TRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRGLDKTGTVIVMAYDDPLSPTDFKEV 745
Query: 353 FAGVEP-LVSQFTASYGMVLNLLA--GAKV----MHLSNESDDMKALQAGRS-LEEARKL 404
G L SQF +Y M+LNLL KV H +E+ L + +E +K
Sbjct: 746 VLGTPTKLSSQFRLTYSMILNLLRIEALKVEEMIKHSFSENSTQVLLPENQKRYDEIKKQ 805
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE 438
++ S S L +E C + E + L E
Sbjct: 806 LQSSTITPC-SKCSLEGTEETCNLLTEYENLYGE 838
Score = 238 (88.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 66/223 (29%), Positives = 109/223 (48%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKT- 81
DV+ ++ DEVHY++DI RG VWEE+II P V+ I LSATV N E A W+G+ K
Sbjct: 397 DVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPNTFEFANWVGRTKQKDI 456
Query: 82 ELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK---PYKDGGS 138
+I++ +RPVPL + S K L ++D + + + L K P GS
Sbjct: 457 YVISTPKRPVPLEIFVSAKNQLFKVVDANRRFQENEFRKHKDLLEGGGKKNELPSTTMGS 516
Query: 139 RRRNSRKHADMNSNNIVTSF--GQHQ---LSKNSINAIRR--SQVPQV---IDTLWHLRS 188
R N GQ + ++ + + +R P+ ID + +++S
Sbjct: 517 GSRGGPGGTARGGNRGGRGGRGGQGRGGNANRGNFSGPKRFGRDGPKKNTWIDLVNYMKS 576
Query: 189 RDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKR 231
++LPA+ F+F+++ C+ L + + E SE+ + + R
Sbjct: 577 NNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFIDR 619
Score = 74 (31.1 bits), Expect = 8.3e-27, Sum P(2) = 8.3e-27
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPST 817
G A + EL + ++ N L D +PA++ A+ + V EG R + + P
Sbjct: 1073 GRVACEVNSGWELIITELVLNNFLGDFEPAEIVALLSCFVYEG---RTQEEEPPLITPRL 1129
Query: 818 TV--INVINVLDEHRSSFLELQEKHGVEIPCCLDSQ---FSGMVEAWASGLTWREMM 869
++ + ++ ++E Q E ++S+ + +V WA+GL++ E+M
Sbjct: 1130 EKGKAKILEIAEKLLKVYVEKQVSLTSEEEDFVESKRFALANVVYEWANGLSFNEIM 1186
Score = 38 (18.4 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 896 LPDVDQRLQKNAVDASNVMD 915
LPD +QRLQ ++A +D
Sbjct: 1047 LPDYEQRLQ--VLEAMGYID 1064
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 336 (123.3 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 86/203 (42%), Positives = 113/203 (55%)
Query: 180 IDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA 239
+ L LR+R LP + F F+R CD L +L E SE+ L L+R +
Sbjct: 189 LSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGS 248
Query: 240 VRE-PAI---KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
R+ P + LL +G+ HH+G LPI K +E LF RGLVKV+FATET A G+NMPAR
Sbjct: 249 DRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPAR 308
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKL 351
T V S+ K S L E QMAGRAGRRG+D G V+L+ + P E A+ ++
Sbjct: 309 TVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP-EMAD-LHRM 366
Query: 352 LFAGVEPLVSQFTASYGMVLNLL 374
+ L SQF +Y M+LNLL
Sbjct: 367 MMGKPSQLQSQFRLTYTMILNLL 389
Score = 51 (23.0 bits), Expect = 8.8e-27, Sum P(2) = 8.8e-27
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 758 GETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSE 799
G A A+ +EL L ++ + L L+P ++AA+ + LV +
Sbjct: 712 GRVACAM-SSHELLLTELMFDNALSTLRPEEIAALLSGLVCQ 752
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 317 (116.6 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 94/263 (35%), Positives = 137/263 (52%)
Query: 186 LRSRDMLPAIWFIFNRRGCDA-AVQYLE-DCNLLDECEMSEVELALKRFRILYPDAVREP 243
+ R+ P I F F+++ C+A A+Q + D N +E +M E E+ L + + P
Sbjct: 370 IMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVE-EVFNNAIDCLSDEDKKLP 428
Query: 244 AIKGLL----KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
++ +L +G+ HH G LPI K IE LF GL+K +FATET A GINMPART + +
Sbjct: 429 QVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFT 488
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
S SK ++S E QM+GRAGRRG+D+RG V+L+ +LL +PL
Sbjct: 489 SASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPL 548
Query: 360 VSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSL----EEARKLVEQSFGNYV-- 413
S F +Y MVLNLL ++ Q R++ E+ KL EQ + V
Sbjct: 549 NSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQ-YNKIVIP 607
Query: 414 -GSNVMLAAK--DELCKIQKETD 433
NV++ K +L K+ KE +
Sbjct: 608 NEENVVIYYKIRQQLAKLGKEIE 630
Score = 75 (31.5 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWI-GQIHGKT 81
+V ++ DE+HY+ D +G + I+ P I + + D A I I
Sbjct: 234 EVAWVIFDEIHYMRDSEKGNFEDIFIVAIPGNTLYIIMELSYYLGDGFAEKIIFSIKQPC 293
Query: 82 ELITSSRRPVPLTWYF--STKTALLPLLDEKG 111
+I + RP PL Y + L ++DE G
Sbjct: 294 HVIYTDYRPTPLQHYIFPAGGDGLRLVVDENG 325
Score = 37 (18.1 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 454 EAAYK---EMANLQEELKAEKRFRTELRRRMELKRFSALKDILK 494
E YK A + ++KA KR + R +++ K +L+
Sbjct: 805 ETIYKLCERKAQIAMDIKAAKRELKKARTVLQMDELKCRKRVLR 848
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 336 (123.3 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 90/253 (35%), Positives = 129/253 (50%)
Query: 133 YKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHLRSR 189
++DG S++ + N ++ V G+ S NS N A RRS + + L
Sbjct: 588 HQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKLSKM 647
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELAL-KRFRILYPDAVREPAI--- 245
+LP + F F++ CD L +L E SE+ + K F L P +
Sbjct: 648 SLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVLRL 707
Query: 246 KGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
+ LL +G+ HHAG LPI K +E LF RG++KV+F+TET A G+N PART V +L K
Sbjct: 708 QSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKF 767
Query: 305 TASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTPYEGAEECCKLLFAGVEPLVS 361
QL E QMAGRAGRRG+D G VV++ + P E + +++ L S
Sbjct: 768 DGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDES--DLRRVIVGSATRLES 825
Query: 362 QFTASYGMVLNLL 374
QF +Y M+L+LL
Sbjct: 826 QFRLTYIMILHLL 838
Score = 259 (96.2 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 67/221 (30%), Positives = 109/221 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTE 82
D++ ++ DEVHY++D+ RG VWEE+II P+ + + LSATV N E A WIG+ K
Sbjct: 465 DIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEI 524
Query: 83 LIT-SSRRPVPLTW--YFST---KTALLPLLDEKG----KHMNRKLSLNYLQLSTSEV-- 130
+T +++RPVPL ++S K + KG K +K + N + ++ +
Sbjct: 525 RVTGTTKRPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKNSNAVSVAPKQQMG 584
Query: 131 -KPYKDGG-SRRRNSRKHADMNSNNIVTSFGQHQLSKNSIN--AIRRSQVPQVIDTLWHL 186
++DG S++ + N ++ V G+ S NS N A RRS + + L
Sbjct: 585 SSAHQDGSKSQKHEAHSRGKQNKHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINKL 644
Query: 187 RSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVEL 227
+LP + F F++ CD L +L E SE+ +
Sbjct: 645 SKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRV 685
Score = 38 (18.4 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 39/180 (21%), Positives = 72/180 (40%)
Query: 697 KIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFP 756
K+ + +K E IK+ K K L ++ F +V+ +D + V+
Sbjct: 1116 KLEEHMKLARE-IKKHKTDLKDLEFQMSDEALLQMPAFQGRIDVLKNIGCID-DDLVVQI 1173
Query: 757 LGETAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPS 816
G A + EL + L +L+P + A+ ++ V + KN S+ P+
Sbjct: 1174 KGRVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQ------KNTSA---PT 1224
Query: 817 TT--VINVINVLDEHRSSFLELQEKHGVEI-P--CCLDSQFSGMVEA---WASGLTWREM 868
T + L + ELQ ++ ++I P ++ G+VE WA G + E+
Sbjct: 1225 LTPKLAKAKQRLYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEI 1284
>DICTYBASE|DDB_G0278827 [details] [associations]
symbol:DDB_G0278827 "Probable ATP-dependent RNA
helicase DDX60" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0278827 GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AAFI02000024 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 RefSeq:XP_641993.1
ProteinModelPortal:Q54XN7 EnsemblProtists:DDB0206223 GeneID:8621725
KEGG:ddi:DDB_G0278827 InParanoid:Q54XN7 OMA:RESALIC Uniprot:Q54XN7
Length = 1816
Score = 196 (74.1 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 55/169 (32%), Positives = 89/169 (52%)
Query: 241 REPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSS 300
++P L +G+AAHH GC + +E LF+ ++VVFAT TLA G+N PA+++V
Sbjct: 1258 KDPLAPALTQGIAAHHGGCDKNYLRNVEYLFRSKKIQVVFATSTLAVGVNAPAKSSVFLG 1317
Query: 301 LSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLV 360
S LTS Q AGRAGRRG DN G+V+ V P ++ +LL + + ++
Sbjct: 1318 DSPYLNV----LTSK---QCAGRAGRRGFDNYGNVIFVGLP---KQKINRLLNSRLSNII 1367
Query: 361 SQFTASYGMVLNLLA--GAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
S + L+L++ +N+S++ +Q + +E K E+
Sbjct: 1368 GNSVVSPSLCLSLVSRYDYSTNGSANKSNEENKVQVKENEKEREKEKEK 1416
Score = 89 (36.4 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI--HGKTELI 84
I+ DEVH ++ G +WE ++++ P + LSAT+ N + ++ +I + K LI
Sbjct: 946 IIFDEVHQIASSVDGAIWERLLVFNP--APFLALSATLGNLTDFHNFLKKIDPNRKVSLI 1003
Query: 85 TSSRRPVPLTWYFSTKTALLPLLDEK 110
R L +F +T P D K
Sbjct: 1004 HYQSRFNDLKNFFLCQT---PAKDNK 1026
Score = 66 (28.3 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYL-EDC-------NLLDECEMSEVELAL 229
++ + + L+ +D+LPA++F FNR C Q + D N+++E +++L +
Sbjct: 1146 EITNIVLELQKQDLLPALFFSFNRSLCSRLAQRVYNDITHRNTNPNIIEE--KKQLDLVI 1203
Query: 230 KRFR 233
+RF+
Sbjct: 1204 ERFQ 1207
Score = 43 (20.2 bits), Expect = 4.4e-16, Sum P(4) = 4.4e-16
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 783 DLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTVINVINVL 826
DLK +Q + + W N +PST N ++L
Sbjct: 1661 DLKDSQKTTTTTTTATTSTITNKWNENFEKLKPSTENFNTGDLL 1704
Score = 37 (18.1 bits), Expect = 1.8e-15, Sum P(4) = 1.8e-15
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 524 GKFDSLDSSKLKNMASINDSFALNRLAQSNGD 555
G F + KLKN+ N F+ L N D
Sbjct: 1706 GIFKVSNLKKLKNILGSNTYFSTRILPYCNVD 1737
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 185 (70.2 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 50/135 (37%), Positives = 69/135 (51%)
Query: 239 AVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
AV E + L +G+ HH+G ++ +E LF+ G + VV AT TL+ GINMP RT V
Sbjct: 1212 AVPEWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVF 1271
Query: 299 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 358
S +QL + Q AGRAGRRG D GHV + P + +LL +
Sbjct: 1272 LGDS-------LQLNALNFHQAAGRAGRRGFDLLGHVGFLGVPLH---KIYRLLTTKLWD 1321
Query: 359 LVSQFTASYGMVLNL 373
+ QF + +VL L
Sbjct: 1322 IQGQFPLTTSLVLQL 1336
Score = 88 (36.0 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQI 77
I+ DE+H + + G V E++++ P I+ LSATV N E W+ +
Sbjct: 861 IIFDEIHCIGQMEDGLVEEQLLLLAP--CPIVALSATVGNPQEFQVWLSAL 909
Score = 71 (30.1 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 145 KHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGC 204
KH +V S + S S++AI ++ +P + D L S+++LPAI F ++R+ C
Sbjct: 1048 KHFCSEPQKVVNSQLELHNSAYSLDAISQNLLPMLKD----LHSKELLPAICFNYDRQEC 1103
Query: 205 D 205
+
Sbjct: 1104 E 1104
Score = 45 (20.9 bits), Expect = 1.2e-15, Sum P(4) = 1.2e-15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 474 RTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGV 514
R + M+ +F A IL + N HL F+ ++Y EG+
Sbjct: 1350 RDTIHALMDEPKFMANGSILSNQVNHHLRFV-IEYLRREGL 1389
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 200 (75.5 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 65/224 (29%), Positives = 108/224 (48%)
Query: 194 AIWFIFNRRGCD-AAVQYLEDCNL-LDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 250
A+ F N++ C+ AV + + + + +E + L+ + D + +K +L
Sbjct: 406 AVIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQCILS 465
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HH+G + +E F GL+ VV AT TLAAG+N+P R ++ K GR
Sbjct: 466 GVAYHHSGLTQDERKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVII----KAPMVGRE 521
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMV 370
+L + QMAGRAGR G D +G + + E ++L + + +S ++ M
Sbjct: 522 RLGKAQYLQMAGRAGRAGFDTKGDCITIIKAGEEERWFREMLKSDIPRCMSSLSSEESMG 581
Query: 371 LNLLAGAKVMHLSNESDD-MKALQ-----AGRSLEEARKLVEQS 408
+ + V+ L+ ++ M A++ A S E RKLVE S
Sbjct: 582 -SFILDCVVLKLAENIEEIMTAVRYSLFYAQESPENIRKLVESS 624
Score = 84 (34.6 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 20 GLFD-VDVIVLDEVHYLSDISRGTVWEEIII-YCPKEV-QIICLSATVANADELAGWIGQ 76
G D V ++V+DE+H + D RG + E+++ + K QI+ +SAT+ N D+L +
Sbjct: 284 GQLDRVGMVVVDELHMIGDGGRGAILEQLLAKFLYKGTGQIVGMSATLPNIDDLKFAL-- 341
Query: 77 IHGKTELITSSRRPVPLT 94
+ + +++ RPV LT
Sbjct: 342 ---RAFVYSTNFRPVELT 356
>ZFIN|ZDB-GENE-060503-421 [details] [associations]
symbol:helq "helicase, POLQ-like" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR010995 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060503-421 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
EMBL:BX649525 CTD:113510 IPI:IPI00799443 RefSeq:XP_691411.3
UniGene:Dr.86132 Ensembl:ENSDART00000109412 GeneID:562952
KEGG:dre:562952 NextBio:20884669 Uniprot:F1Q4P2
Length = 1010
Score = 171 (65.3 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
G+A HH+G + +EE + G++ ++ T TLAAGIN+PAR +L S A+ +
Sbjct: 560 GLAYHHSGLTSDERKLVEEAYSSGVLCLLTCTSTLAAGINLPARRVILRS--PYVAADFL 617
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGM- 369
+ + + QM GRAGR GID G +L+ + KLL A +E S G
Sbjct: 618 KRSQYK--QMVGRAGRAGIDAMGESILILQDKD-INTAKKLLCAPMEKCYSNLLHDGGRG 674
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGRSL--EEARKLVEQSFGNYVGSNVMLAAKDELCK 427
+L+L+ + ++ + +K L G L +EA+ E+S + ++ + L +
Sbjct: 675 LLSLILSLIGLKITTTVEQVKDLMKGTFLGVQEAQVSPEKSLWDLTVESIQTLKQKNLIE 734
Query: 428 IQKE 431
+ +
Sbjct: 735 VSSD 738
Score = 114 (45.2 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQI 77
L ++ ++V+DE+H L D SRG + E I+Y K Q+I +SAT+ N +L ++
Sbjct: 375 LDNIGLVVVDELHMLGDGSRGAILEMTLSKILYMSKSTQVIGMSATLGNVKDLQSFL--- 431
Query: 78 HGKTELITSSRRPVPLTWYFSTKTAL 103
+ E T++ RPV L Y K ++
Sbjct: 432 --RAENYTNNFRPVELKEYVKIKDSI 455
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 179 (68.1 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 57/176 (32%), Positives = 88/176 (50%)
Query: 219 ECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKV 278
+C+ ++E ++ + D V I+ L +GV HHAG ++ +E L +RG + V
Sbjct: 1187 KCQREDLEELIRSLNWVNLDPV---FIEALRRGVGVHHAGMNRKYRQVVEMLCRRGFLTV 1243
Query: 279 VFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
V AT TLA GIN+P +T V S S + L++ Q +GRAGRRG D G+VV
Sbjct: 1244 VIATGTLALGINVPCKTVVFSEDS-------VFLSALNYRQASGRAGRRGFDLLGNVVF- 1295
Query: 339 QTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 394
P + E ++ + + L QF S +VL L+ H N ++A Q+
Sbjct: 1296 NIPTHRSFE---IMSSRLPDLRGQFPVSTTIVLRTLSLCS--HTQNNEFSIQAAQS 1346
Score = 110 (43.8 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQ 76
I+ DEVH + G VWE++++ P II LSATV N E W+ +
Sbjct: 844 IIFDEVHCIGQAQEGVVWEQLLLLAP--CPIIALSATVGNPQEFVAWLSE 891
Score = 51 (23.0 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 177 PQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 226
P+ L L R LPAI F ++R C++ ++ +++ E + E+E
Sbjct: 1064 PEHFQLLLDLHQRQGLPAIIFNYDRMKCESIMK-----SVISELKRHELE 1108
>UNIPROTKB|J9P160 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 CTD:113510 EMBL:AAEX03016730 RefSeq:XP_544959.2
Ensembl:ENSCAFT00000044378 GeneID:487837 KEGG:cfa:487837
Uniprot:J9P160
Length = 1072
Score = 163 (62.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 50/170 (29%), Positives = 82/170 (48%)
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
P +K + GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L
Sbjct: 602 PILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 658
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 358
+ + L N+ QM GRAGR GID+ G +L+ + ++ +L+ +E
Sbjct: 659 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQEKD-KQQVLELISRPLENCYS 716
Query: 359 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
LV +FT + L G K+ + DD+ G +K++ Q
Sbjct: 717 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMCGTFFGVQQKILLQ 763
Score = 116 (45.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 18 ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G + + ++V+DE+H + + SRG + E ++Y K QII +SAT+ N ++L +
Sbjct: 422 ETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLTNVEDLQKF 481
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNY 122
+ + E TS RPV L Y A+ + E G +R L+ Y
Sbjct: 482 L-----QAEYYTSQFRPVELKEYLKINDAIYEVDSKAENGMTFSRLLNCQY 527
>UNIPROTKB|E2RST3 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 OMA:SRPLENC EMBL:AAEX03016730
Ensembl:ENSCAFT00000014486 Uniprot:E2RST3
Length = 1106
Score = 163 (62.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 50/170 (29%), Positives = 82/170 (48%)
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
P +K + GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L
Sbjct: 636 PILKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 692
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 358
+ + L N+ QM GRAGR GID+ G +L+ + ++ +L+ +E
Sbjct: 693 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDSIGESILILQEKD-KQQVLELISRPLENCYS 750
Query: 359 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQ 407
LV +FT + L G K+ + DD+ G +K++ Q
Sbjct: 751 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMCGTFFGVQQKILLQ 797
Score = 116 (45.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 18 ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G + + ++V+DE+H + + SRG + E ++Y K QII +SAT+ N ++L +
Sbjct: 456 ETGRISSLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLTNVEDLQKF 515
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNY 122
+ + E TS RPV L Y A+ + E G +R L+ Y
Sbjct: 516 L-----QAEYYTSQFRPVELKEYLKINDAIYEVDSKAENGMTFSRLLNCQY 561
>MGI|MGI:2176740 [details] [associations]
symbol:Helq "helicase, POLQ-like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017116 "single-stranded
DNA-dependent ATP-dependent DNA helicase activity" evidence=ISO]
[GO:0017117 "single-stranded DNA-dependent ATP-dependent DNA
helicase complex" evidence=ISO] InterPro:IPR001650
InterPro:IPR010995 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2176740 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
SUPFAM:SSF47794 GO:GO:0017116 CTD:113510 OMA:SRPLENC
OrthoDB:EOG4THVSJ EMBL:BC082601 EMBL:BC109169 EMBL:BC109170
EMBL:AK052427 EMBL:AF436846 IPI:IPI00226287 IPI:IPI00886160
IPI:IPI00890018 RefSeq:NP_001074576.1 UniGene:Mm.21469
ProteinModelPortal:Q2VPA6 SMR:Q2VPA6 STRING:Q2VPA6
PhosphoSite:Q2VPA6 PRIDE:Q2VPA6 Ensembl:ENSMUST00000044684
GeneID:191578 KEGG:mmu:191578 UCSC:uc008yhz.1 UCSC:uc012dzs.1
HOGENOM:HOG000110747 InParanoid:Q2VPA6 NextBio:371088 Bgee:Q2VPA6
Genevestigator:Q2VPA6 GO:GO:0017117 Uniprot:Q2VPA6
Length = 1069
Score = 163 (62.4 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 53/192 (27%), Positives = 90/192 (46%)
Query: 197 FIFNRRGCDAAVQYLEDCNLLDECEMSEVEL----ALKRFRILYPDAVREPAIKGLLK-G 251
F +++ C+ + L C L + ++ E +K R + V P +K + G
Sbjct: 542 FCPSKKNCENVAEML--CKFLSKDYLNHREKEKCEVIKSLRNIGNGKVC-PVLKRTVPFG 598
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ 311
+A HH+G + +EE + G++ ++ T TLAAG+N+PAR +L +
Sbjct: 599 IAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVIL----RAPYVANTF 654
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP----LVSQFTASY 367
L N+ QM GRAGR GID G +L+ + ++ +L+ +E LV +FT
Sbjct: 655 LKRNQYKQMVGRAGRAGIDTAGESILLLQEKD-KQQVLELISGPLETCCSHLVEEFTKGI 713
Query: 368 GMVLNLLAGAKV 379
+ L G K+
Sbjct: 714 QALFLSLIGLKI 725
Score = 113 (44.8 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 34/116 (29%), Positives = 56/116 (48%)
Query: 12 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANAD 68
V + S L + ++V+DE+H + + SRG + E ++Y K QII +SAT+ N +
Sbjct: 404 VNALIETSRLSTLGLVVVDELHMIGEGSRGAILEMTLAKVLYTSKTTQIIGMSATLNNVE 463
Query: 69 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEK--GKHMNRKLSLNY 122
+L ++ K E TS RPV L + + + + G +R LS Y
Sbjct: 464 DLQAFL-----KAEYYTSQFRPVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKY 514
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 194 (73.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 93/330 (28%), Positives = 145/330 (43%)
Query: 69 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQLST 127
EL W+ H + E T + P + + S T ++ PLL EK + M + +L +L +
Sbjct: 1075 ELTSWVKNGHAE-EAKTVLKNLCPDSVFSSENTVSMFPLLVEKLRKMEKLPALFFL-FNL 1132
Query: 128 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQVID--TLW 184
+V+ + R RK A H L N I IR+S + + ID +L
Sbjct: 1133 EDVER-RAASLRYFLLRKQAMQRPPKADKE--AHDLI-NKIRKIRKSIERQKTIDERSLK 1188
Query: 185 HLRSRDMLPAIWFIFNR--RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ R D N + + ++ E+C ++ + L + R+ + E
Sbjct: 1189 NPRKMDQKLIYEAEHNNLLKILEKNLEIPEECTYANQKAIDAETLQMVFDRVKFTRKGAE 1248
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
+K L + G+ HH+ K +E LF++G ++VV AT TLA GINMP ++ V
Sbjct: 1249 --LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVF--- 1303
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
A I L + QM+GRAGRRG D G V P E KL+ + V L
Sbjct: 1304 ----AQNSIYLDALNYRQMSGRAGRRGQDLMGDVYFFGIPLPKIE---KLIKSNVPELRG 1356
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKA 391
QF +VL L+ A +++ +D KA
Sbjct: 1357 QFPLGITLVLRLMLLASK---ADDPEDAKA 1383
Score = 84 (34.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 77
++ DEVH L VWE +++ CP + LSAT++N + L W+ +
Sbjct: 882 VIFDEVHCLGGEIGAEVWEHLLVMIRCP----FLALSATISNPEHLTEWLQSV 930
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 194 (73.4 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 93/330 (28%), Positives = 145/330 (43%)
Query: 69 ELAGWIGQIHGKTELITSSRRPVPLTWYFSTKT-ALLPLLDEKGKHMNRKLSLNYLQLST 127
EL W+ H + E T + P + + S T ++ PLL EK + M + +L +L +
Sbjct: 1078 ELTSWVKNGHAE-EAKTVLKNLCPDSVFSSENTVSMFPLLVEKLRKMEKLPALFFL-FNL 1135
Query: 128 SEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRS-QVPQVID--TLW 184
+V+ + R RK A H L N I IR+S + + ID +L
Sbjct: 1136 EDVER-RAASLRYFLLRKQAMQRPPKADKE--AHDLI-NKIRKIRKSIERQKTIDERSLK 1191
Query: 185 HLRSRDMLPAIWFIFNR--RGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVRE 242
+ R D N + + ++ E+C ++ + L + R+ + E
Sbjct: 1192 NPRKMDQKLIYEAEHNNLLKILEKNLEIPEECTYANQKAIDAETLQMVFDRVKFTRKGAE 1251
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
+K L + G+ HH+ K +E LF++G ++VV AT TLA GINMP ++ V
Sbjct: 1252 --LKALARRGIGYHHSSLSFKDKQLVEVLFRKGFIRVVTATGTLALGINMPCKSVVF--- 1306
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
A I L + QM+GRAGRRG D G V P E KL+ + V L
Sbjct: 1307 ----AQNSIYLDALNYRQMSGRAGRRGQDLMGDVYFFGIPLPKIE---KLIKSNVPELRG 1359
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKA 391
QF +VL L+ A +++ +D KA
Sbjct: 1360 QFPLGITLVLRLMLLASK---ADDPEDAKA 1386
Score = 84 (34.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 77
++ DEVH L VWE +++ CP + LSAT++N + L W+ +
Sbjct: 885 VIFDEVHCLGGEIGAEVWEHLLVMIRCP----FLALSATISNPEHLTEWLQSV 933
>UNIPROTKB|F1RIW4 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003727 GO:GO:0051607
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 OMA:QDCTYAD GO:GO:1900245 GO:GO:1900246
GeneTree:ENSGT00690000102154 EMBL:AEMK01191618 EMBL:CU469408
Ensembl:ENSSSCT00000010657 Uniprot:F1RIW4
Length = 1705
Score = 194 (73.4 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 97/340 (28%), Positives = 149/340 (43%)
Query: 69 ELAGWI--GQIHGKTELITSSRRPVPLTWYFSTKTA-LLPLLDEKGKHMNRKLSLNYL-Q 124
EL W+ G + + ++ RP + S A + PLL EK K M + +L +L +
Sbjct: 1072 ELTDWVKSGCVK-QARMVLKHLRPGSVI--SSENMADMFPLLVEKLKQMEKLPALFFLFK 1128
Query: 125 LSTSE-----VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQV--P 177
L E VK + + +R+ K AD ++++ + + S I + P
Sbjct: 1129 LGAVEERARSVKTFLEKKQQRKRPPK-ADKEAHDMENKLRKVRKSIEKQKTIDEKSLKKP 1187
Query: 178 QVID-TLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILY 236
+ +D +L H D L + + ++ +DC D+ + L R+
Sbjct: 1188 RNMDQSLIHEAEHDNLLKV--------LEKNLEIPQDCTYADQKALDAQTLQTVFDRV-- 1237
Query: 237 PDAVREPA-IKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
R+ A +K L +GV HH+ K +E LF++G ++VV AT TLA GINMP +
Sbjct: 1238 -KLTRKGAELKALAARGVGYHHSSLNFKEKQLVEILFRKGFIRVVTATGTLALGINMPCK 1296
Query: 295 TAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
+ V A I L + QM+GRAGRRG D G V P E KL+ +
Sbjct: 1297 SVVF-------AQNSIYLDALNYRQMSGRAGRRGQDLLGDVYFFDIPLPKIE---KLIKS 1346
Query: 355 GVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQA 394
V L QF S +VL L M L+++ DD QA
Sbjct: 1347 NVPQLRGQFPLSISLVLRL------MLLASKGDDPGDAQA 1380
Score = 83 (34.3 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 77
++ DEVH L +WE +++ CP + LSAT++N + L W+ +
Sbjct: 880 VIFDEVHCLGGEIGAEIWEHLLVMIRCP----FLALSATISNPEHLTEWLQSV 928
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 167 (63.8 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 87/312 (27%), Positives = 137/312 (43%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HH+G + IEE + RG++ ++ T TLAAG+N+PAR +L + AS +
Sbjct: 546 GVAYHHSGLTNDERKSIEEAYSRGVLCLLACTATLAAGVNLPARRVILRA--PYVASEFL 603
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCK-LLFAGVEP----LVSQFTA 365
+ N+ QM GRAGR GIDN G +LV E + + L+ + +E L+ + T
Sbjct: 604 K--KNQYKQMIGRAGRAGIDNAGESILVVQ--EKDKHLVRDLITSPLENCYSNLLPEITK 659
Query: 366 SYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDEL 425
+L L G K+ E +++ L E+S V +DEL
Sbjct: 660 GMQYLLLSLVGLKIAVTQEEVYSFMC-HTLLGVQQQLLLKEKSLSEIV--------RDEL 710
Query: 426 CKIQKETDVLTSEISD-DAIDRKSRRLLSEAAYKEMANLQ--EELKAEKRFRTE---LRR 479
+ E +L +I D ++ + LL +A YK ++ L E R E L
Sbjct: 711 ENLI-EKGLLKGKIMDQNSKSTLTVTLLGKATYKGSIDVSYCNLLYKELRKGLEGLVLES 769
Query: 480 RMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMAS 539
+ L + D++ + + +L Q+ E V A +G +S + K A
Sbjct: 770 SLHLLYLATPYDMVSNCSPDWMIYL-RQFNQLSSAEQKV-ADMVGVPESFIAKKASGQAI 827
Query: 540 IN--DSFALNRL 549
DS A+NRL
Sbjct: 828 RKNVDSTAVNRL 839
Score = 105 (42.0 bits), Expect = 6.3e-14, Sum P(2) = 6.3e-14
Identities = 30/105 (28%), Positives = 52/105 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHG 79
D+ ++V+DE+H + + SRG V E I+Y K ++ +SAT+ N +L ++
Sbjct: 363 DLGLVVVDELHMIGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDLQKFL----- 417
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLD--EKGKHMNRKLSLNY 122
+ E T + RPV L Y + + + E G +R L+ Y
Sbjct: 418 QAEYYTKNFRPVELKEYIKIRDTIYEVDSKAENGFTFSRLLNFKY 462
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 178 (67.7 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 84/329 (25%), Positives = 154/329 (46%)
Query: 240 VREPAI-KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
+ P + K L G+A HH+G + +IE ++ G+V V+ T TLAAG+N+PA+ ++
Sbjct: 558 ILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICCTSTLAAGVNLPAKRVII 617
Query: 299 SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP 358
+ G+ LT + QM GRAGR G+ G +L+ + ++LF+ ++
Sbjct: 618 ----RAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGESILIAQSKDNLL-VGQMLFSPMDK 672
Query: 359 LVSQFTASYGMVL-NLLAGAKVMHLSNESDDMKAL--------QAGRSLEEA-----RKL 404
+S + + L +L+ ++L+ D+ L QA +SLE A ++
Sbjct: 673 ALSSLDQNEAVGLQSLILSVVGLNLAECRRDLNRLVNSTLLSVQA-KSLEVAVNEIVLRI 731
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSE-ISDDAIDRKSRRLL-SEAAYKEMAN 462
+ + F N V + LA KI +D++TS+ +S RRLL ++ ++ N
Sbjct: 732 LREMFKNKV---LQLAEPQAKSKINS-SDIITSQDVSQANRPAGDRRLLIGQSTPFKLTN 787
Query: 463 L-QEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSEGVEHSVPA- 520
+ + KA ++ ELK+ + + IL ++ HL +L + + +E + PA
Sbjct: 788 IGRAAFKAGIDYKRANAIHKELKQ-AQQQLILTNYL--HLLYLVVCFNSNERGDELFPAD 844
Query: 521 --VYLGKFDSL--DSSKLKNMASINDSFA 545
+ G + SL DS + ++ A
Sbjct: 845 ASILFGVYTSLPLDSQAMFKQLGFTEAHA 873
Score = 93 (37.8 bits), Expect = 8.5e-14, Sum P(2) = 8.5e-14
Identities = 22/87 (25%), Positives = 44/87 (50%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHG 79
++ ++V+DE+H + + RG E +++ +QI+ +SAT+ N E++ ++
Sbjct: 384 EIGLVVVDELHLIGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLN---- 439
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPL 106
++ T RPV L Y LL +
Sbjct: 440 -ADVYTRGFRPVELKEYIKCGPDLLEI 465
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 184 (69.8 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 57/180 (31%), Positives = 88/180 (48%)
Query: 212 EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEEL 270
+DC D+ + E L + R+ Y + +K L + G+ HH+ K +E L
Sbjct: 814 KDCTYADQKAIDEEALQMVFKRVKYER--KGDTLKKLARRGIGYHHSSMTNKEKQLVEIL 871
Query: 271 FQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID 330
F++G ++VV AT TL+ GINMP ++ V A + L + QM+GRAGRRG D
Sbjct: 872 FRKGFIRVVTATRTLSLGINMPCKSVVF-------AQNSVYLDALNYRQMSGRAGRRGQD 924
Query: 331 NRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMK 390
G V P + KL+ + V L QF S ++L L M L+ ++DD++
Sbjct: 925 LLGDVYFFDIPLP---KIGKLIKSKVPDLRGQFPLSITLILRL------MLLATKADDLE 975
Score = 86 (35.3 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 77
++ DEVH + R +WE +++ CP + LSAT++N L W+ +
Sbjct: 478 VIFDEVHCIGGEIRAEIWEHLLVMIRCP----FLALSATISNPQHLTEWLQSV 526
Score = 48 (22.0 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLED-CNLLDE 219
LR + LPA++F+F+ D + E C L+E
Sbjct: 713 LRKMEKLPAVFFLFS---LDTVEECAESVCEFLEE 744
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 152 (58.6 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 43/122 (35%), Positives = 64/122 (52%)
Query: 240 VREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
V E + ++ GVA H+A + IE F+ + V+ AT TL+ G+N+PAR +L
Sbjct: 732 VEEDFKRMIMAGVAYHNADLTNDEREVIERGFKERSLLVLCATSTLSTGVNLPARRVILR 791
Query: 300 SLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPL 359
S GR L QM GRAGR GID G +L+ + ++ KLL + ++PL
Sbjct: 792 S----PRMGRNVLDIRSYRQMVGRAGRAGIDEFGESILMCDHF-APDKAKKLLTSPMDPL 846
Query: 360 VS 361
+S
Sbjct: 847 LS 848
Score = 125 (49.1 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 33/90 (36%), Positives = 49/90 (54%)
Query: 12 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII---IYCPK-EVQIICLSATVANA 67
V + + L D+ +V+DE+H + D RG + E +I +Y K ++QII +SAT+ N
Sbjct: 560 VNQLIEDGRLLDIGCVVVDEIHMIGDGERGQLLEVLISKLLYMSKGQIQIIGMSATIPNI 619
Query: 68 DELAGWI-GQIHGKTELITSSRRPVPLTWY 96
D L W G ++ T RPVPLT Y
Sbjct: 620 DNLQKWFRGGVYQGTF------RPVPLTEY 643
Score = 42 (19.8 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 11/74 (14%), Positives = 31/74 (41%)
Query: 80 KTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSR 139
K L T+++ +P Y + ++ +++ + N + N + + + +
Sbjct: 166 KQSLSTNNKTNIPKNNYQNDNKKIIGIINTHNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 225
Query: 140 RRNSRKHADMNSNN 153
N+ + + N+NN
Sbjct: 226 NNNNNNNNNNNNNN 239
Score = 39 (18.8 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 893 IPKLPDVDQ 901
IP++PD+DQ
Sbjct: 1003 IPEIPDLDQ 1011
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 135 DGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAI 171
+ + N+ + + N+NN + + + N+IN I
Sbjct: 212 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINGI 248
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 191 (72.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 94/342 (27%), Positives = 155/342 (45%)
Query: 69 ELAGWI--GQIHGKTELITSSRRPVPLTWYFSTK--TALLPLLDEKGKHMNRKLSLNYLQ 124
EL WI GQ+ K + + + P L+ S+K + PLL EK + M+ KL +
Sbjct: 1059 ELTNWIKNGQVK-KVKRVLKNLSPDSLS---SSKDMVKMFPLLVEKLRQMD-KLPAIFFL 1113
Query: 125 LSTSEVKPYKDGGS-----RRRNSRKHADMNSNNIVTSFGQ--HQLSKNSINAIRRSQVP 177
+V K GS + ++ H ++ V + + ++ K +++ P
Sbjct: 1114 FKNDDVG--KRAGSVCTFLEKTETKSHPHTECHSYVFAIDEVLEKVRKTQKRITKKN--P 1169
Query: 178 QVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEM-SEV----ELALKRF 232
+ + L + I F+ N + ++ EDC D + +E+ + L+R
Sbjct: 1170 KKAEKL-ERKKVYRAEYINFLENLK----ILEISEDCTYADVKALHTEITRNKDSTLERV 1224
Query: 233 --RILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
R+ + +E +K L +G+ HH+ K F+E LF +GL++VV ATETLA GI
Sbjct: 1225 LPRVRFTRHGKE--LKALAQRGIGYHHSSMYFKEKEFVEILFVKGLIRVVTATETLALGI 1282
Query: 290 NMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECC 349
+MP ++ V A + L + QM+GRAGRRG D G+V P +
Sbjct: 1283 HMPCKSVVF-------AQDSVYLDALNYRQMSGRAGRRGQDLLGNVYFFDIPLPKIK--- 1332
Query: 350 KLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKA 391
+LL + V L QF S +VL L+ A ++ +D KA
Sbjct: 1333 RLLASSVPELRGQFPLSITLVLRLMLLASK---GDDPEDAKA 1371
Score = 79 (32.9 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 27 IVLDEVHYLSDISRGTVWEE--IIIYCPKEVQIICLSATVANADELAGWIGQI 77
++ DEVHYL WE +II CP + LSAT+ N + L W+ +
Sbjct: 866 VIFDEVHYLGREVGAKFWELLLVIIRCP----FLVLSATINNPNLLTKWLQSV 914
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 148 (57.2 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 41/149 (27%), Positives = 71/149 (47%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK- 250
PA+ F+ +RR A+ + C + D + + + Y V + +K L+
Sbjct: 1371 PALIFVASRRQTRLTALDLIHLCGMEDNPRRF-LNIDDEEELQYYLSQVTDDTLKLSLQF 1429
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS--G 308
G+ HHAG + +S +LFQ+ ++++ AT TLA G+N+PA ++ A G
Sbjct: 1430 GIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEG 1489
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVL 337
+ ++ QM GRAGR D G ++
Sbjct: 1490 YRDMDLTDILQMMGRAGRPAYDTTGTAIV 1518
Score = 132 (51.5 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 40/155 (25%), Positives = 77/155 (49%)
Query: 241 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL- 298
R+ +K + + G HHAG ++ E++F+ G +KV+ T TLA G+N+PA ++
Sbjct: 583 RDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIK 642
Query: 299 -SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
+ + G I L +++ Q+ GR GR G + ++ T + + L+
Sbjct: 643 GTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLI-TQQH 701
Query: 358 PLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKAL 392
P+ S+F + +V NL A + ++N + ++ L
Sbjct: 702 PIESRFGSK--LVDNLNAEISLGSVTNVDEAIEWL 734
Score = 129 (50.5 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 45/133 (33%), Positives = 68/133 (51%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIII---YCPKE----VQIICLSATVANADELAGWIG 75
DV +I++DE+H L+ RG + E I+ Y + V+++ +S V+NA ++AGW+G
Sbjct: 1259 DVSLIIMDEIHLLAS-DRGPILEMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLG 1317
Query: 76 -QIHGKTELITSSRRPVPLTWY---FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVK 131
+ HG SS RPVPL Y F A PL+ K MN+ + + Q S K
Sbjct: 1318 VKDHGLYNF-PSSVRPVPLKMYIDGFPDNLAFCPLM----KTMNKPVFMAIKQHSPD--K 1370
Query: 132 PYKDGGSRRRNSR 144
P + RR +R
Sbjct: 1371 PALIFVASRRQTR 1383
Score = 74 (31.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DEVH L + RG+V E ++ ++V+ II LSAT+ N ++A ++G
Sbjct: 421 VKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLG- 478
Query: 77 IHGKTELI--TSSRRPVPL 93
++ + + S RP PL
Sbjct: 479 VNRQIGMFYFDQSFRPKPL 497
Score = 49 (22.3 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 700 DTVKFTEEKIKRLKARSKRLTK-RI-EQIE-PSGWKEFLRISNVIHETRALD 748
D +KF EE+ K LK S + +I Q++ P G K + + I +TR D
Sbjct: 839 DGIKFREEESKELKRLSDESVECQIGSQLDTPQG-KANVLLQAYISQTRIFD 889
Score = 45 (20.9 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 15/72 (20%), Positives = 33/72 (45%)
Query: 662 SFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTK 721
+F +E +Q+ K ++I R G+K+ + D + F + + K R + +
Sbjct: 1797 TFSEQGFIEMTPQQKKKKLLTLEEIGRF-GYKKLLNVFDQLTFGMTESEDTKKRFVSVCQ 1855
Query: 722 RIEQIEPSGWKE 733
R+ +E ++E
Sbjct: 1856 RLPVLEGMKFEE 1867
Score = 44 (20.5 bits), Expect = 3.0e-06, Sum P(4) = 3.0e-06
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+GI R W+ + + S +++ I++L R LE+
Sbjct: 1245 DGIS-RNWQTRKFVQDVSLIIMDEIHLLASDRGPILEM 1281
Score = 37 (18.1 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 63 TVANADELAGWIG 75
+V N DE W+G
Sbjct: 723 SVTNVDEAIEWLG 735
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 163 (62.4 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 42/138 (30%), Positives = 72/138 (52%)
Query: 238 DAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTA 296
+ V+ I+ L + G++ HHAG L ++ +E+ F G +KV+ T TLA G+N+PA T
Sbjct: 766 EKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTV 825
Query: 297 VLSSLSKRTAS--GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFA 354
++ A G + L +++ Q+ GRAGR D G L+ T + + L+ +
Sbjct: 826 IIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLL-TSKDKLDHYLSLMSS 884
Query: 355 GVEPLVSQFTASYGMVLN 372
+ P+ S+F + LN
Sbjct: 885 SM-PIESKFITNLEDHLN 901
Score = 136 (52.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 70/297 (23%), Positives = 125/297 (42%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
V++ ++ L G+ HHAG ++ +E LF ++++ +T TLA G+N+PA ++
Sbjct: 1602 VKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVII 1661
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGH-VVLVQTPYEGAEECCKLLFAG 355
+ + ++ QM GRAGR D G +V+V P + + K L+
Sbjct: 1662 KGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYK--KFLYDP 1719
Query: 356 --VEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYV 413
VE + F + LN A+++ + +S + R +V S+ +
Sbjct: 1720 FPVESHLKDFLHDH---LN----AEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYG-L 1771
Query: 414 GSNVMLAAKDELCKIQKET--DVLTS---EIS--DDAIDRKSRRLLS--EAAYKEMANLQ 464
N + A L + T D+ S EI+ D+ I ++ S YK + N
Sbjct: 1772 EDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTVQNFS 1831
Query: 465 EELKAEKRFRTELRRRMELKRFSAL-----KDILKDFENGHLPFLCLQYKDSEGVEH 516
+ +K + +T LR + +S ++IL N +LP Y+DS H
Sbjct: 1832 DNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGNYEDSHTKVH 1888
Score = 100 (40.3 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 40/120 (33%), Positives = 60/120 (50%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +I++DE+H L + RG V E I+ ++V+ I+ LSAT+ N ++A +I
Sbjct: 611 VRLIIIDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFIRA 669
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
T SS RPVPLT F + + D +G M K ++N L E K K+G
Sbjct: 670 PASGTHFFDSSYRPVPLTQNF------IGVKDNQGI-MVMKNNMNQLCYERLE-KSLKEG 721
Score = 60 (26.2 bits), Expect = 3.7e-13, Sum P(3) = 3.7e-13
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 783 DLKPAQLAAVCASLVS------EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
D P +A A +V+ +GI R WKN S + S +I+ I+++ E R LE+
Sbjct: 1410 DYTPNMIALQNADIVTTTPEKWDGIS-RNWKNRSYVTSVSLLIIDEIHLIGELRGPILEV 1468
Score = 49 (22.3 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 405 VEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRKSRRL-LSEAAYKEMANL 463
+ + F +++ SN++L+ +++ + +D+L +I D I + LS++ KE N+
Sbjct: 1963 INKDFADFLSSNLILSNGEQISNL---SDML--KIPRDKIHLSLTNIGLSDSQIKETLNV 2017
Query: 464 QEELKAEK 471
+ L K
Sbjct: 2018 IDHLPKVK 2025
Score = 41 (19.5 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 226
P W + R+ D A+ L ++DE + E
Sbjct: 592 PEKWDVITRKSSDVALTKLVRLIIIDEIHLLHEE 625
>UNIPROTKB|E9PSY5 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1560216 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI01007603 Ensembl:ENSRNOT00000031633 ArrayExpress:E9PSY5
Uniprot:E9PSY5
Length = 805
Score = 158 (60.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 52/172 (30%), Positives = 79/172 (45%)
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
P +K + GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L
Sbjct: 585 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 641
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 358
+ L N+ QM GRAGR GID G +L+ + ++ L+ +E
Sbjct: 642 -RAPYVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKD-KQQVLGLINGPLEDCHS 699
Query: 359 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
LV +FT + L G K L + D + + R KL + SF
Sbjct: 700 HLVEEFTKGIQSLFLSLIGLKEKGLL-QKDSHGSPEESRCHFRITKLGQASF 750
Score = 104 (41.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 32/109 (29%), Positives = 52/109 (47%)
Query: 18 ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G + + ++V+DE+H + + SRG E ++Y K QII +SAT+ N ++L +
Sbjct: 405 ETGRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAF 464
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
+ K E TS RPV L + + + M LNY
Sbjct: 465 L-----KAEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGMTFSRLLNY 508
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 184 (69.8 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 52/162 (32%), Positives = 81/162 (50%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HHAG + + +E LF+ G + V+F+T TL+ G+NMP +T +
Sbjct: 1280 RGIGYHHAGLNTVERGAVEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMFGV-------DT 1332
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQ--FTASY 367
+QLT QM+GRAGRRG D+ G+V+ + P + +LL A + L FT +
Sbjct: 1333 LQLTPLLYRQMSGRAGRRGFDHSGNVIFMSIP---TSKVRRLLTASLSNLQGNPPFTVLF 1389
Query: 368 GMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSF 409
+L L A + NE + R+ A+ L+E SF
Sbjct: 1390 --LLRLFAYVHQQDILNEEGQKVSTMKQRAFA-AKSLLEHSF 1428
Score = 94 (38.1 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII--IYCPKEVQIICLSATVANADELAGWIGQIHGKT 81
+ +V DEVH + +WE+++ I CP + LSAT+ NA++L W+ +
Sbjct: 907 IKYVVFDEVHSIGASEESHIWEQLLLLIQCP----FLALSATIGNANKLHEWL---NSSE 959
Query: 82 ELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKH 113
+ ++ +R V L Y + L L +L+ H
Sbjct: 960 QAKSAGKRKVELINYGERYSELELSILNINDPH 992
Score = 40 (19.1 bits), Expect = 4.5e-13, Sum P(3) = 4.5e-13
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVE 226
L+ + LPAI F +R C+ L N L+ E+ +E
Sbjct: 1138 LKEKGELPAICFNDDRHVCEKLAVTL--ANELERRELEYME 1176
Score = 38 (18.4 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 102 ALLPLLDEKGKHMNRKLSLNYL 123
A + LLD K H N KL L+ L
Sbjct: 384 AAVVLLD-KADHANSKLDLSDL 404
>UNIPROTKB|Q8TDG4 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AF436845 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GO:GO:0008026 EMBL:AK128665
EMBL:AC096768 EMBL:BC015428 EMBL:BC095473 EMBL:AL512702
IPI:IPI00152527 IPI:IPI00647582 IPI:IPI00807650 IPI:IPI00889496
RefSeq:NP_598375.2 UniGene:Hs.480101 ProteinModelPortal:Q8TDG4
SMR:Q8TDG4 IntAct:Q8TDG4 STRING:Q8TDG4 PhosphoSite:Q8TDG4
DMDM:296434521 PaxDb:Q8TDG4 PRIDE:Q8TDG4 DNASU:113510
Ensembl:ENST00000295488 GeneID:113510 KEGG:hsa:113510
UCSC:uc003hom.3 UCSC:uc003hoo.1 UCSC:uc003hop.1 CTD:113510
GeneCards:GC04M084328 HGNC:HGNC:18536 HPA:HPA036853 MIM:606769
neXtProt:NX_Q8TDG4 PharmGKB:PA164720529 InParanoid:Q8TDG4
OMA:SRPLENC OrthoDB:EOG4THVSJ PhylomeDB:Q8TDG4 GenomeRNAi:113510
NextBio:78853 ArrayExpress:Q8TDG4 Bgee:Q8TDG4 Genevestigator:Q8TDG4
Uniprot:Q8TDG4
Length = 1101
Score = 161 (61.7 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 57/203 (28%), Positives = 95/203 (46%)
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
P +K + GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L
Sbjct: 630 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 686
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 358
+ + L N+ QM GRAGR GID G +L+ + ++ +L+ +E
Sbjct: 687 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKD-KQQVLELITKPLENCYS 744
Query: 359 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV--EQSFGNYVGS 415
LV +FT + L G K+ + DD+ G +K++ E+S
Sbjct: 745 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVE 801
Query: 416 NVMLAAKDELCKIQKETDVLTSE 438
++ + L +QK+T + SE
Sbjct: 802 SLRYLTEKGL--LQKDT-IYKSE 821
Score = 114 (45.2 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 36/110 (32%), Positives = 56/110 (50%)
Query: 18 ESGLFD-VDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G D + ++V+DE+H + + SRG E I+Y K QII +SAT+ N ++L +
Sbjct: 450 ETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKF 509
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNY 122
+ + E TS RPV L Y + + D K ++ M LNY
Sbjct: 510 L-----QAEYYTSQFRPVELKEYLKINDTIYEV-DSKAENGMTFSRLLNY 553
Score = 37 (18.1 bits), Expect = 4.8e-13, Sum P(3) = 4.8e-13
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHET--RALD 748
L R +Q+ +G+K + ++N E R +D
Sbjct: 1020 LEGRAKQLYSAGYKSLMHLANANPEVLVRTID 1051
>UNIPROTKB|E9PT19 [details] [associations]
symbol:Helq "Protein Helq" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1560216
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 IPI:IPI00958253 Ensembl:ENSRNOT00000002974
ArrayExpress:E9PT19 Uniprot:E9PT19
Length = 879
Score = 157 (60.3 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 45/142 (31%), Positives = 69/142 (48%)
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
P +K + GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L
Sbjct: 585 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 641
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 358
+ L N+ QM GRAGR GID G +L+ + ++ L+ +E
Sbjct: 642 -RAPYVANTFLKRNQYKQMIGRAGRAGIDTAGESILLLQEKD-KQQVLGLINGPLEDCHS 699
Query: 359 -LVSQFTASYGMVLNLLAGAKV 379
LV +FT + L G K+
Sbjct: 700 HLVEEFTKGIQSLFLSLIGLKI 721
Score = 104 (41.7 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 32/109 (29%), Positives = 52/109 (47%)
Query: 18 ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G + + ++V+DE+H + + SRG E ++Y K QII +SAT+ N ++L +
Sbjct: 405 ETGRMGTLGLVVVDELHMIGEGSRGATLEMTLAKVLYTSKTTQIIGMSATLNNVEDLQAF 464
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNY 122
+ K E TS RPV L + + + M LNY
Sbjct: 465 L-----KAEYYTSQFRPVELKEFLKVNDTIYEVDSRAVDGMTFSRLLNY 508
>UNIPROTKB|F1RVE2 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:CU467102 EMBL:CU468150 Ensembl:ENSSSCT00000010115
Uniprot:F1RVE2
Length = 1103
Score = 159 (61.0 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 67/254 (26%), Positives = 118/254 (46%)
Query: 197 FIFNRRGCDAAVQYLEDCNLLDE-----CEMSEVELALKRFRILYPDAVREPAIKGLLK- 250
F ++ C+ + + C +L + E + EL LK + + +V P +K +
Sbjct: 585 FCPTKKNCENVAEMI--CKILSKEYLKHREKEKHEL-LKNLKAISGGSVC-PVLKHTIPF 640
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HH+G + +EE G++ ++ T TLAAG+N+PA+ +L + +
Sbjct: 641 GVAYHHSGLTNDERKLLEEAHSAGVLCLLTCTSTLAAGVNLPAQRVIL----RAPYVAKE 696
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP----LVSQFTAS 366
L N+ QM GRAGR GID+ G +L+ + ++ +L+ +E LV +FT
Sbjct: 697 FLKRNQYKQMIGRAGRAGIDSVGESILIFQEKD-KQQVLELISRPLENCYSRLVQEFTKG 755
Query: 367 YGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV--EQSFGNYVGSNVMLAAKDE 424
+ L G K+ + D+ +G +K++ E+S ++ +
Sbjct: 756 IQTLFLSLIGLKI---ATTLGDIYHFMSGTFFGVQQKILLKEKSLWEITVESLRYLTEKG 812
Query: 425 LCKIQKETDVLTSE 438
L +QK+T VL SE
Sbjct: 813 L--LQKDT-VLGSE 823
Score = 103 (41.3 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 18 ESG-LFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGW 73
E+G + + ++V+DE+H + + SRG E I+Y K QI+ +SAT+ N ++L +
Sbjct: 452 ETGRIGGLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQIVGMSATLNNVEDLQAF 511
Query: 74 IGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNY 122
+ + E +S RPV L Y + + D K ++ M LNY
Sbjct: 512 L-----RAEYYSSWFRPVELKEYLKINDTIYEV-DSKAENGMTFSRLLNY 555
>FB|FBgn0263599 [details] [associations]
symbol:l(3)72Ab "lethal (3) 72Ab" species:7227 "Drosophila
melanogaster" [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005682 "U5 snRNP" evidence=ISS] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0007067 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR
GO:GO:0004004 GO:GO:0000381 EMBL:BT016121 EMBL:AY069270
RefSeq:NP_648818.3 UniGene:Dm.973 ProteinModelPortal:Q9VUV9
SMR:Q9VUV9 IntAct:Q9VUV9 STRING:Q9VUV9 PaxDb:Q9VUV9 PRIDE:Q9VUV9
EnsemblMetazoa:FBtr0075527 GeneID:39737 KEGG:dme:Dmel_CG5931
FlyBase:FBgn0036548 InParanoid:Q9VUV9 OrthoDB:EOG4S4MWW
PhylomeDB:Q9VUV9 GenomeRNAi:39737 NextBio:815125 Bgee:Q9VUV9
GermOnline:CG5931 Uniprot:Q9VUV9
Length = 2142
Score = 188 (71.2 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 66/238 (27%), Positives = 114/238 (47%)
Query: 157 SFGQHQLSKNSINAIRRSQVPQVI---DTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLED 213
S Q + A++R QV I T+ H +L F+ +R+ + + D
Sbjct: 684 SLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLV---FVHSRKETGKTARAVRD 740
Query: 214 CNLLDECEMSEVELALKRFRILYPDA--VREPAIKGLLK-GVAAHHAGCLPIWKSFIEEL 270
L + S ++ +L +A V+ +K LL G A HHAG + ++ +E+L
Sbjct: 741 MCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDL 800
Query: 271 FQRGLVKVVFATETLAAGINMPARTAVLSSLSK-RTASGR-IQLTSNELFQMAGRAGRRG 328
F ++V+ +T TLA G+N+PA T ++ GR ++L++ ++ QM GRAGR
Sbjct: 801 FADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQ 860
Query: 329 IDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLN--LLAGAKVMHLSN 384
D +G +L+ T + + LL + P+ SQF + +LN ++ G V HL +
Sbjct: 861 YDTKGEGILI-TNHSELQFYLSLLNQQL-PIESQFISKLPDMLNAEIVLGT-VQHLQD 915
Score = 71 (30.1 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E ++ +EV+++ LSAT+ N ++A ++
Sbjct: 609 VRLVIIDEIHLLHD-ERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRV 667
Query: 77 IHGKTEL-ITSSRRPVPL 93
K +S RPV L
Sbjct: 668 KPDKGLFYFDNSYRPVSL 685
Score = 57 (25.1 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
Identities = 34/156 (21%), Positives = 67/156 (42%)
Query: 428 IQKETDVLTSE--ISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKR 485
IQ DVL+S +S + +++++A + + LK F E+ +R K+
Sbjct: 1927 IQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSK----DSYLKQLPHFSPEIVKRCTEKK 1982
Query: 486 FSALKDI--LKDFENGHLPFLC-LQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASIND 542
+ DI L+D + L L LQ D + P + L ++ +D ++ + +++N
Sbjct: 1983 IETVFDIMELEDEDRTRLLQLSDLQMADVARFCNRYPNIELN-YEVVDKDRINSGSTVNV 2041
Query: 543 SFALNRLAQSNGD---DYDTQDVKPSYYVALGSDNT 575
L R + G + Q + ++V +G T
Sbjct: 2042 VVQLEREDEVTGPVIAPFFPQKREEGWWVVIGDPKT 2077
Score = 44 (20.5 bits), Expect = 3.0e-11, Sum P(3) = 3.0e-11
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 803 VRLWKNNSSIYEPSTTVINVINVLDEHRSSFLELQEKHGVEIPCCLDSQFSGMVE 857
+R+ +N ++Y S I +L++HR+ L H CCL+ SG+++
Sbjct: 927 IRMLRN-PTLYGVSHDAIKADPLLEQHRADLL-----HTAA--CCLER--SGLIK 971
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 205 (77.2 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 64/195 (32%), Positives = 100/195 (51%)
Query: 197 FIFNRRGCDAAVQYLEDC--NL---LD--ECEMSEVELALKRFRILYPDAVREPAIKGLL 249
F +R+GC++ +++ N+ +D E ++ A+ R P V +P ++ L
Sbjct: 775 FCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALR-RSPSGV-DPVLEETL 832
Query: 250 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
GVA HHAG + +E +++GLV+V+ AT TLAAG+N+PAR + ++ G
Sbjct: 833 PSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIF----RQPMIG 888
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASY- 367
R + QM+GRAGR GID +G VL+ P E + LL PL S +
Sbjct: 889 RDFIDGTRYKQMSGRAGRTGIDTKGDSVLICKPGE-LKRIMALLNETCPPLQSCLSEDKN 947
Query: 368 GM---VLNLLAGAKV 379
GM +L ++AG V
Sbjct: 948 GMTHAILEVVAGGIV 962
Score = 61 (26.5 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 55 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTAL 103
+QI+ +SAT+ N +A W+ +TE RPVPL Y + +
Sbjct: 690 LQIVGMSATMPNVGAVADWLQAALYQTEF-----RPVPLEEYIKVGSTI 733
Score = 56 (24.8 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 12 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWE 45
+ + E L ++ +IV+DE+H + D RG + E
Sbjct: 621 INRLLEEGRLSELGIIVIDELHMVGDQHRGYLLE 654
Score = 38 (18.4 bits), Expect = 2.1e-12, Sum P(4) = 2.1e-12
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 898 DVDQRLQKNAVDASNVMDRPPIS 920
+V+ +L KN D S+ DR I+
Sbjct: 1868 EVEFKLDKNGRDVSSDADRYKIN 1890
>FB|FBgn0002905 [details] [associations]
symbol:mus308 "mutagen-sensitive 308" species:7227
"Drosophila melanogaster" [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS;NAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IMP] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR003583 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00278 SMART:SM00482 SMART:SM00490
EMBL:AE014297 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006200 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG1204 GeneTree:ENSGT00640000091272
GO:GO:0006303 GO:GO:0006289 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:L76559 EMBL:BT044169 PIR:T13858 RefSeq:NP_524333.1
UniGene:Dm.23677 HSSP:P00582 SMR:O18475 STRING:O18475
EnsemblMetazoa:FBtr0082662 GeneID:41571 KEGG:dme:Dmel_CG6019
UCSC:CG6019-RA CTD:41571 FlyBase:FBgn0002905 InParanoid:O18475
OrthoDB:EOG4FJ6QM GenomeRNAi:41571 NextBio:824448 Uniprot:O18475
Length = 2059
Score = 154 (59.3 bits), Expect = 3.8e-12, Sum P(4) = 3.8e-12
Identities = 54/196 (27%), Positives = 89/196 (45%)
Query: 246 KGLLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRT 305
K + A HHAG + IE F+ G +KV+ AT TL++G+N+PAR ++ S
Sbjct: 538 KAITYACAFHHAGLTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRS----P 593
Query: 306 ASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS--QF 363
G Q++S QM GRAGR G D G +L+ A L+ + ++P+ S
Sbjct: 594 LFGGKQMSSLTYRQMIGRAGRMGKDTLGESILICNEIN-ARMGRDLVVSELQPITSCLDM 652
Query: 364 TASYGMVLNLLA--GAKVMHLSNESD---DMKALQAGRSLEEARKLV-EQSFGNYVGSNV 417
S + LL + V + + D + L A ++ K E+S NY+ +
Sbjct: 653 DGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPDEESDANYINDAL 712
Query: 418 MLAAKDELCKIQKETD 433
+ E ++Q+ +
Sbjct: 713 DFLVEYEFVRLQRNEE 728
Score = 102 (41.0 bits), Expect = 3.8e-12, Sum P(4) = 3.8e-12
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 12 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEI---IIYCPK----EVQIICLSATV 64
V + + L + ++V+DEVH +SD RG + E + I+Y + ++Q+I +SAT+
Sbjct: 339 VNKLMEQGKLETIGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATL 398
Query: 65 ANADELAGWIGQIHGKTELITSSRRPVPL 93
N L W+ EL ++ RPV L
Sbjct: 399 ENVQLLQSWLD-----AELYITNYRPVAL 422
Score = 53 (23.7 bits), Expect = 3.8e-12, Sum P(4) = 3.8e-12
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 502 PF-LCLQYKDSEGVEHSVPAVYLGKFDSLDS--SKLKNMASINDSFALNRLAQSNGDDYD 558
P+ +C Q +D + + +Y+ ++ L S K+ + + D+F L DY
Sbjct: 781 PYSVCYQLQDIDWL------LYVHMWEKLSSPMKKVGELVGVRDAFLYKALRGQTKLDYK 834
Query: 559 TQDVKPSYYVAL 570
+ +Y+AL
Sbjct: 835 QMQIHKRFYIAL 846
Score = 50 (22.7 bits), Expect = 3.8e-12, Sum P(4) = 3.8e-12
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 850 SQFSGMVEAWASGLTWREM-MMXXXXXXXXXXXXXXXTIDLLAQIPKLPDVDQRLQKNAV 908
S F+G+V A+ + L W + ++ IDL+ ++PD+ Q+ +
Sbjct: 879 STFAGIVTAFCNSLQWSTLALIVSQFKDRLFFGIHRDLIDLM----RIPDLSQKRARALF 934
Query: 909 DA 910
DA
Sbjct: 935 DA 936
Score = 43 (20.2 bits), Expect = 1.9e-11, Sum P(4) = 1.9e-11
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 661 MSFEYHDAVENYKEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEE---KIKRLKARSK 717
+S ++H A + ++ T+V AR++GF E I ++ E ++ LK +++
Sbjct: 1907 ISDQFHQAYKGIRDYTTRVVNF----ARSKGFVE--TITGRRRYLENINSDVEHLKNQAE 1960
Query: 718 R 718
R
Sbjct: 1961 R 1961
Score = 41 (19.5 bits), Expect = 3.0e-11, Sum P(4) = 3.0e-11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 666 HDAVENYKEQRTKVARLKKKIARTEGFK 693
HD E K R + +LK+ A+ E K
Sbjct: 1538 HDGKEQLKMLRKAIPQLKRISAKLEDAK 1565
>ASPGD|ASPL0000044033 [details] [associations]
symbol:AN2482 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:BN001307 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 OMA:FPGKHYC InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GO:GO:0008026 OrthoDB:EOG4H75KM
EMBL:AACD01000041 RefSeq:XP_660086.1 ProteinModelPortal:Q5BAE8
EnsemblFungi:CADANIAT00009203 GeneID:2875191 KEGG:ani:AN2482.2
Uniprot:Q5BAE8
Length = 2015
Score = 160 (61.4 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 49/148 (33%), Positives = 70/148 (47%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDE----CEMSEVELALKRFRILYPDAVREPAIKG 247
P I F+ +RR A + C + D MSE +L L R+ DA+RE
Sbjct: 1363 PVIVFVASRRQTRLTAKDLINFCGMEDNPRRFVRMSEDDLQLNLERVK-DDALRE----A 1417
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L G+ HHAG + + EELF ++++ AT TLA G+N+PA V+ A
Sbjct: 1418 LSFGIGLHHAGLVESDRQLAEELFANNKIQILVATSTLAWGVNLPAHLVVVKGTQFFDAK 1477
Query: 308 --GRIQLTSNELFQMAGRAGRRGIDNRG 333
G + ++ QM GRAGR D+ G
Sbjct: 1478 TEGYKDMDLTDVLQMLGRAGRPQFDSSG 1505
Score = 100 (40.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 40/132 (30%), Positives = 60/132 (45%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII---YCPKE----VQIICLSATVANADELAGWIGQ 76
V ++++DE+H L RG + E I+ Y + V+++ +S ANA +LA W+G
Sbjct: 1253 VSLVIIDEIHLLGG-DRGPILEIIVSRMNYIASQSKGSVRLMGMSTACANASDLANWLGV 1311
Query: 77 IHGKTELITSSRRPVPLTWY---FSTKTALLPLLDEKGKHMNRKLSLNYLQLST-SEVKP 132
G S RPVPL Y F + PL+ MNR +L + S KP
Sbjct: 1312 KEGLYNF-RHSVRPVPLEIYIDGFPEQRGFCPLMQS----MNRP---TFLAIKNHSPEKP 1363
Query: 133 YKDGGSRRRNSR 144
+ RR +R
Sbjct: 1364 VIVFVASRRQTR 1375
Score = 89 (36.4 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DEVH L D RG V E ++ ++V+ I+ LSAT+ N ++A ++ +
Sbjct: 424 VRLLIIDEVHMLHD-ERGAVIESLVARTQRQVESTQSLIRIVGLSATLPNYVDVADFL-K 481
Query: 77 IHGKTELI--TSSRRPVPLTWYF 97
++ L SS RPVPL +F
Sbjct: 482 VNKMAGLFFFDSSFRPVPLEQHF 504
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 155 (59.6 bits), Expect = 9.2e-12, Sum P(4) = 9.2e-12
Identities = 42/131 (32%), Positives = 69/131 (52%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + +E F+ G ++V+ +T TLA G+N+PA T ++
Sbjct: 799 LKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQV 858
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
G ++L+ ++ QM GRAGR D +G +++ T Y + +L+ + P+ S
Sbjct: 859 YNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIII-TGYSKLQYYLRLMNEQL-PIES 916
Query: 362 QFTASYGMVLN 372
QF + LN
Sbjct: 917 QFISKLADQLN 927
Score = 99 (39.9 bits), Expect = 9.2e-12, Sum P(4) = 9.2e-12
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII------IYCPKE-VQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D +RG V E I+ I KE ++++ LSAT+ N D++A ++ +
Sbjct: 634 VRLLIIDEIHLLDD-NRGPVLESIVARTLRQIESTKEHIRLVGLSATLPNCDDVASFL-R 691
Query: 77 IHGKTELITSSR--RPVPL 93
+ K L R RPVPL
Sbjct: 692 VDLKNGLFIFDRSYRPVPL 710
Score = 83 (34.3 bits), Expect = 0.00098, Sum P(2) = 0.00098
Identities = 37/157 (23%), Positives = 66/157 (42%)
Query: 188 SRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVR--EPAI 245
+++ PAI F+ R+ L + +D M + L L P ++ E +
Sbjct: 1580 AKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDN--MKSPDFLLGNLEELEPFLIQICEETL 1637
Query: 246 KGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKR 304
K L+ G+ H G + + + +LF+ G ++V + +L G + A V+ +
Sbjct: 1638 KETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVV--MGTH 1695
Query: 305 TASGRIQLTSN----ELFQMAGRAGRRGIDNRGHVVL 337
GR S+ L QM GR R +D+ G V+
Sbjct: 1696 FYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVI 1732
Score = 55 (24.4 bits), Expect = 9.2e-12, Sum P(4) = 9.2e-12
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 597 LAQGDALPRETMSLLLDKGEMLWEK---LADSEFGGLWC 632
L Q +P+E + + L+K +++WE+ L+ E G L C
Sbjct: 1154 LWQFPGIPKEIL-MKLEKNDLVWERYYDLSSQELGELIC 1191
Score = 47 (21.6 bits), Expect = 9.2e-12, Sum P(4) = 9.2e-12
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 770 LWLAMV-LRNKILLDLKPAQLAAVCASLVSEGIKV-RLWKNNSSIYEPSTTVINVINVLD 827
L L +V L + LLDLK + + S + + R WK I + S +++ ++++
Sbjct: 1427 LGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIG 1486
Query: 828 EHRSSFLEL 836
LE+
Sbjct: 1487 GQGGQVLEV 1495
Score = 39 (18.8 bits), Expect = 7.0e-06, Sum P(4) = 7.0e-06
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 134
T A+L +L + G +MN + N+ V P K
Sbjct: 535 TNVAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMK 570
>POMBASE|SPBC13G1.10c [details] [associations]
symbol:mug81 "ATP-dependent RNA helicase Slh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:2000765 "regulation of
cytoplasmic translation" evidence=ISS] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 PomBase:SPBC13G1.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0007126 GO:GO:2000765
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GO:GO:0004004 PIR:T39411
RefSeq:NP_596560.1 ProteinModelPortal:O60072 PRIDE:O60072
EnsemblFungi:SPBC13G1.10c.1 GeneID:2539673 KEGG:spo:SPBC13G1.10c
OMA:RKPTGEG OrthoDB:EOG4H75KM NextBio:20800827 Uniprot:O60072
Length = 1935
Score = 143 (55.4 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 48/149 (32%), Positives = 68/149 (45%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECE----MSEVELALKRFRILYPDAVREPAIKG 247
P + F+ +RR A + C L D M E EL + I+ V + ++K
Sbjct: 1364 PVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEM----IV--SEVEDKSLKL 1417
Query: 248 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA 306
L G+A HHAG + EELF V+++ AT TLA G+N PA ++ A
Sbjct: 1418 ALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDA 1477
Query: 307 S--GRIQLTSNELFQMAGRAGRRGIDNRG 333
G + ++ QM GRAGR DN G
Sbjct: 1478 KIGGYKDMDLTDVLQMLGRAGRPQFDNSG 1506
Score = 117 (46.2 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 44/175 (25%), Positives = 80/175 (45%)
Query: 213 DCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELF 271
+ +LLD + + LA + + +K L K + H+AG L + E LF
Sbjct: 553 EADLLDNSQHEKYSLAQRDV-----SKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLF 607
Query: 272 QRGLVKVVFATETLAAGINMPARTAVL--SSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329
G++K++ T TLA G+N+PA ++ + L + L ++ Q+ GRAGR
Sbjct: 608 SMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQF 667
Query: 330 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSN 384
++ V + T ++ ++ P+ S+FT +V NL A + ++N
Sbjct: 668 ESSA-VAYIITTHDKLSHYISVV-TQQSPIESRFTDR--LVDNLNAEVSLGTVTN 718
Score = 113 (44.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 33/81 (40%), Positives = 44/81 (54%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIII---YCP----KEVQIICLSATVANADELAGWIG 75
DV +I+LDE+H L RG V E I+ Y K+V+++ LS VANA++LA W+
Sbjct: 1254 DVSLIILDEIHLLGS-DRGPVLEMIVSRMNYVASQTNKKVRVLGLSTAVANANDLANWLN 1312
Query: 76 QIHGKTELITSSRRPVPLTWY 96
G S RPVPL Y
Sbjct: 1313 IRDGLFNF-RHSVRPVPLEIY 1332
Score = 82 (33.9 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DEVH L D RG V E ++ + V+ I+ LSAT+ N ++A ++G
Sbjct: 415 VRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGV 473
Query: 77 IHGKTELITSSR-RPVPLTWYF 97
K SS RP P+ +F
Sbjct: 474 NRYKGLFYFSSAFRPCPIEQHF 495
Score = 51 (23.0 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+GI R WK+ + + S +++ I++L R LE+
Sbjct: 1240 DGI-TRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEM 1276
Score = 45 (20.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 63 TVANADELAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALL-PLLDEKGKHM 114
TV N DE W+G T L RR PL + + + PLL K + +
Sbjct: 715 TVTNIDEAVSWLGY----TYLYIRMRRN-PLVYGIAYDELVEDPLLGSKRREL 762
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 143 (55.4 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 39/126 (30%), Positives = 65/126 (51%)
Query: 241 REPAIKGL-LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL- 298
R +K L + G HHAG L ++ E++F+ G +KV+ T TLA G+N+PA ++
Sbjct: 556 RSKELKELFVHGFGVHHAGMLRSDRNLTEKMFESGAIKVLCCTATLAWGVNLPAAVVIVK 615
Query: 299 -SSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
+ + A G + L +++ Q+ GRAGR + G +L T + + LL
Sbjct: 616 GTQVYDSKAGGFVDLGISDVIQIFGRAGRPQYEKFGTGILCTTS-DKLDHYVSLL-TQQH 673
Query: 358 PLVSQF 363
P+ S+F
Sbjct: 674 PIESKF 679
Score = 137 (53.3 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 34/106 (32%), Positives = 59/106 (55%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
V++ ++ L+ G+ HHAG + + +LF++G ++++ AT TLA G+N+PA ++
Sbjct: 1390 VKDDTLRLSLQFGMGLHHAGLVESDRQISHKLFEQGKIQILIATSTLAWGVNLPAHLVII 1449
Query: 299 SSL----SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQT 340
+K A + LT ++ QM GRAGR D G + +V T
Sbjct: 1450 KGTQFFDAKIEAYRDMDLT--DILQMMGRAGRPAYDTSG-IAIVYT 1492
Score = 118 (46.6 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 41/131 (31%), Positives = 65/131 (49%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII---YCP----KEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L+ RG + E I+ Y K ++++ +S V+NA ++AGW+G
Sbjct: 1234 VSLVIMDEIHLLAS-DRGPILEMIVSRMNYISSQTKKPIRLLGMSTAVSNAFDMAGWLGV 1292
Query: 77 IHGKTELITSSRRPVPLTWY---FSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPY 133
+G S RPVPL Y F A PL+ K MN+ + Q S + KP
Sbjct: 1293 KNGLFNF-PQSVRPVPLQMYIDGFPENLAFCPLM----KTMNKPAFMAIKQHSPN--KPV 1345
Query: 134 KDGGSRRRNSR 144
+ RR +R
Sbjct: 1346 LIFVASRRQTR 1356
Score = 78 (32.5 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DEVH L + RG+V E ++ ++V+ ++ LSAT+ N ++A ++G
Sbjct: 392 VKLLIIDEVHLLHE-DRGSVIETLVARTLRQVESTQSMIRVVGLSATLPNYMDVADFLG- 449
Query: 77 IHGKTELI--TSSRRPVPL 93
++ + S RPVPL
Sbjct: 450 VNRSVGMFYFDQSFRPVPL 468
Score = 45 (20.9 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+GI R W+ + + S +++ I++L R LE+
Sbjct: 1219 DGIS-RNWQTRKFVQQVSLVIMDEIHLLASDRGPILEM 1255
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(4) = 2.7e-07
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 700 DTVKFTEEKIKRLK 713
D++KF EE+ K LK
Sbjct: 811 DSIKFREEESKELK 824
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 176 (67.0 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 58/182 (31%), Positives = 88/182 (48%)
Query: 212 EDCNLLDECEMSEVELALKRF-RILYPDAVREPAIKGLL-KGVAAHHAGCLPIWKSFIEE 269
+DC D+ + + E K F R+ + E +K L +G+ HH+ K +E
Sbjct: 1222 QDCTYADQ-KAVDTETLQKVFGRVKFERKGEE--LKALAERGIGYHHSAMSFKEKQLVEI 1278
Query: 270 LFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGI 329
LF++G ++VV AT TLA G+NMP ++ V A + L + QM+GRAGRRG
Sbjct: 1279 LFRKGYLRVVTATGTLALGVNMPCKSVVF-------AQNSVYLDALNYRQMSGRAGRRGQ 1331
Query: 330 DNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVMHLSNESDDM 389
D G V P+ + KL+ + V L F S +VL L+ A ++ +D
Sbjct: 1332 DLMGDVYFFDIPFP---KIGKLIKSNVPELRGHFPLSITLVLRLMLLASK---GDDPEDA 1385
Query: 390 KA 391
KA
Sbjct: 1386 KA 1387
Score = 83 (34.3 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIY--CPKEVQIICLSATVANADELAGWIGQI 77
++ DEVH L +WE +++ CP + LSAT++N + L W+ +
Sbjct: 886 VIFDEVHCLGGEIGAEIWEHLLVMIRCP----FLALSATISNPEHLTEWLQSV 934
Score = 42 (19.8 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 186 LRSRDMLPAIWFIFNRRGCDAAVQ 209
LR + LPA++F+F + A +
Sbjct: 1121 LRKMEKLPALFFLFKLGAVENAAE 1144
>UNIPROTKB|E3W980 [details] [associations]
symbol:HELQ "Helicase POLQ-like" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 GO:GO:0004386 EMBL:AC096768
HGNC:HGNC:18536 IPI:IPI00965172 ProteinModelPortal:E3W980
SMR:E3W980 Ensembl:ENST00000510985 UCSC:uc010ikb.3
ArrayExpress:E3W980 Bgee:E3W980 Uniprot:E3W980
Length = 1034
Score = 161 (61.7 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 57/203 (28%), Positives = 95/203 (46%)
Query: 243 PAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSL 301
P +K + GVA HH+G + +EE + G++ + T TLAAG+N+PAR +L
Sbjct: 563 PVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVIL--- 619
Query: 302 SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEP--- 358
+ + L N+ QM GRAGR GID G +L+ + ++ +L+ +E
Sbjct: 620 -RAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKD-KQQVLELITKPLENCYS 677
Query: 359 -LVSQFTASYGMVLNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLV--EQSFGNYVGS 415
LV +FT + L G K+ + DD+ G +K++ E+S
Sbjct: 678 HLVQEFTKGIQTLFLSLIGLKI---ATNLDDIYHFMNGTFFGVQQKVLLKEKSLWEITVE 734
Query: 416 NVMLAAKDELCKIQKETDVLTSE 438
++ + L +QK+T + SE
Sbjct: 735 SLRYLTEKGL--LQKDT-IYKSE 754
Score = 96 (38.9 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 32/100 (32%), Positives = 49/100 (49%)
Query: 27 IVLDEVHYLSDISRGTVWEEI---IIYCPKEVQIICLSATVANADELAGWIGQIHGKTEL 83
IV +++H + + SRG E I+Y K QII +SAT+ N ++L ++ + E
Sbjct: 393 IVQEKLHMIGEGSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFL-----QAEY 447
Query: 84 ITSSRRPVPLTWYFSTKTALLPLLDEKGKH-MNRKLSLNY 122
TS RPV L Y + + D K ++ M LNY
Sbjct: 448 YTSQFRPVELKEYLKINDTIYEV-DSKAENGMTFSRLLNY 486
Score = 37 (18.1 bits), Expect = 2.6e-11, Sum P(3) = 2.6e-11
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 719 LTKRIEQIEPSGWKEFLRISNVIHET--RALD 748
L R +Q+ +G+K + ++N E R +D
Sbjct: 953 LEGRAKQLYSAGYKSLMHLANANPEVLVRTID 984
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 175 (66.7 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 48/150 (32%), Positives = 72/150 (48%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-L 248
D P + F R+G A L + D + VE L+ + Y ++R+ +K L
Sbjct: 256 DQKPTLVFCATRKGVQQAASVL----VKDAKFIITVEQKLRLQKSAY--SIRDSKLKDTL 309
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+ GV HHAG + +EELF G + V+F T TLA G+N+PA V+ S T
Sbjct: 310 VYGVGYHHAGMELSDRKLVEELFTSGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYTGGA 369
Query: 309 RIQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ + ++ QM GRAGR D V++
Sbjct: 370 FEEYSETDILQMIGRAGRPQFDTTATAVIM 399
Score = 78 (32.5 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYC--------------PKEVQIICLSATVANADE 69
V + ++DEVH + D +RG E ++ P V+ + +SAT+ NA++
Sbjct: 136 VRLFLIDEVHVIKDENRGPTLEVVVSRMKTVQSLSKTLENASPAPVRFVAVSATIPNAED 195
Query: 70 LAGWI--GQIHGKTELITSSRRPVPL 93
+A W+ G+ + S RPV L
Sbjct: 196 IAEWLSDGERPAVCLKMDESHRPVKL 221
Score = 38 (18.4 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 377 AKVMHLSNESDDMKALQAGRSLEEARKL 404
AKV +S+ D+K+ A S A++L
Sbjct: 902 AKVSAVSSYLSDLKSRDAVSSFPPAKRL 929
>UNIPROTKB|F1SU44 [details] [associations]
symbol:F1SU44 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000008903 OMA:NETIATY Uniprot:F1SU44
Length = 1027
Score = 163 (62.4 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 49/154 (31%), Positives = 82/154 (53%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ GR +L + ++ QM GRAGR D +G +L+ T + + LL + P+ S
Sbjct: 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQAG 395
Q A +LN A+++ L N + + L +G
Sbjct: 892 QMVAKLPDMLN----AEIV-LGNVQNAKRGLGSG 920
Score = 83 (34.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQ 76
V +I+LDE+H L D RG V E ++ ++V++I LSAT+ N +++A ++
Sbjct: 609 VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRV 667
Query: 77 IHGKTEL-ITSSRRPVPL 93
K +S RPVPL
Sbjct: 668 DPAKGLFYFDNSFRPVPL 685
Score = 62 (26.9 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 31/125 (24%), Positives = 48/125 (38%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 157
T AL+ +L E GKH+N ++N + P + S K +
Sbjct: 510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569
Query: 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 217
G HQL K I+A +Q+ ++ T P W I R+G + L +L
Sbjct: 570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIIL 614
Query: 218 DECEM 222
DE +
Sbjct: 615 DEIHL 619
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 183 (69.5 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 47/162 (29%), Positives = 84/162 (51%)
Query: 185 HLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPA 244
H +D I F+ +R+ +YL + +D E V+ LK+ +++ P
Sbjct: 603 HQSLQDRHQLIIFVHSRKETFTTAKYLMEKLDIDIVEQEGVKEILKQ----EGESMSNPK 658
Query: 245 IKGLL-KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K ++ +G HHAG + +E+LF +G ++V+ +T TLA G+N+PA T ++
Sbjct: 659 LKEVIPRGFGIHHAGLTKKDRGVVEDLFAQGYLRVLVSTATLAWGVNLPAHTVIIKGTET 718
Query: 304 RTA-SGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
+ SG +QL+ ++ QM GRAGR D G +++ + E
Sbjct: 719 YSPESGAWVQLSPQDILQMLGRAGRPRYDKNGEGIIITSQDE 760
Score = 73 (30.8 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPK-------EVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E ++ + +++I+ LSAT+ N ++A +I
Sbjct: 500 VKLMIIDEIHLLHD-ERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFIRA 558
Query: 77 IHGKTELITSSRRPVPL 93
+S RP PL
Sbjct: 559 KPEGLFYFDASYRPCPL 575
Score = 44 (20.5 bits), Expect = 4.9e-11, Sum P(3) = 4.9e-11
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEIPCCLDS 850
TV +++++ DE R+ L+L ++ E+ ++S
Sbjct: 1840 TVYDIMSLEDEERNEILQLPDQELNEVASFVNS 1872
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 162 (62.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 49/181 (27%), Positives = 85/181 (46%)
Query: 197 FIFNRRGCDAAVQYLEDCNLLDEC--EMSEVELALKRFRILYPDAVREPAIKGLLK-GVA 253
F+ +R+ +++ D L +E + + A + D+ + +K LL G A
Sbjct: 763 FVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFA 822
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI--Q 311
HHAG + E+LF G ++V+ +T TLA G+N+PA T ++ + I +
Sbjct: 823 IHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTE 882
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVL 371
L+ ++ QM GRAGR D G +++ T + + L+ + P+ SQF L
Sbjct: 883 LSPQDVLQMLGRAGRPQFDTYGEGIII-TAHSELQYYLSLMNQQL-PIESQFMRRLADCL 940
Query: 372 N 372
N
Sbjct: 941 N 941
Score = 86 (35.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII--IYCPKE-----VQIICLSATVANADELAGWIGQ 76
V ++++DEVH L D RG V E I+ I+ +E V+++ LSAT+ N ++A ++
Sbjct: 648 VRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFL-H 705
Query: 77 IHGKTELI--TSSRRPVPLTWYFSTKTALLP 105
+ K L S+ RP PL F T P
Sbjct: 706 VDPKKGLFYFDSTYRPCPLKQEFIGITEKTP 736
Score = 58 (25.5 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 22/92 (23%), Positives = 36/92 (39%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 157
T A+L +L+E KH+ LS N + P K N+ K + +
Sbjct: 549 TNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAEL 608
Query: 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSR 189
G QL+K I+ +Q+ W + +R
Sbjct: 609 TGDSQLTKQQIS---ETQIIVTTPEKWDIITR 637
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 175 (66.7 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 60/184 (32%), Positives = 92/184 (50%)
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRG 274
+LD+ + EV LKR P + + +K + GVA HHAG + IE F++G
Sbjct: 382 ILDQKSLLEVIDQLKRS----PSGL-DSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQG 436
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
L++V+ AT TL++G+N+PAR ++ + G L QM GRAGR+G+D G
Sbjct: 437 LIRVLAATSTLSSGVNLPARRVII----RTPVFGGQPLDILTYKQMVGRAGRKGVDTMGE 492
Query: 335 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK----VMHLSNESDDMK 390
+LV E ++ LL +EP V S G V + + A V +++ S DM+
Sbjct: 493 SILVCKNSEKSKGIA-LLQGSLEP-VHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQ 550
Query: 391 ALQA 394
A
Sbjct: 551 TYAA 554
Score = 62 (26.9 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 55 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93
VQI+ +SAT+ N +A W+ EL + RPVPL
Sbjct: 260 VQIVGMSATLPNLQLVASWLN-----AELYHTDFRPVPL 293
Score = 61 (26.5 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 475 TELRRRMEL-KRFSALKDILKDFENGH-LPFLCLQYK 509
TE R++ L +RFS KDIL ++ H LP L L+++
Sbjct: 2117 TESDRKLRLGRRFSTSKDILNKLKDLHPLPGLILEWR 2153
Score = 48 (22.0 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 27 IVLDEVHYLSDISRGTVWEEII 48
+V+DE+H L D RG + E ++
Sbjct: 214 VVVDELHMLGDSHRGYLLELLL 235
Score = 42 (19.8 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
D LCK Q ++ T + ++R+ S KEM L+ LK K E+ + +
Sbjct: 966 DSLCKFQGNHEIQTPSVY------RARKRTSLGVNKEM--LRTSLKEGKPSTKEVLQTLS 1017
Query: 483 LKR 485
++
Sbjct: 1018 FEK 1020
Score = 37 (18.1 bits), Expect = 3.2e-08, Sum P(4) = 3.2e-08
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 835 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 868
E+ +K+G +I S ++GM+ +++ L W M
Sbjct: 737 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 775
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 175 (66.7 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 60/184 (32%), Positives = 92/184 (50%)
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRG 274
+LD+ + EV LKR P + + +K + GVA HHAG + IE F++G
Sbjct: 382 ILDQKSLLEVIDQLKRS----PSGL-DSVLKNTVPWGVAFHHAGLTFEERDIIEGAFRQG 436
Query: 275 LVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGH 334
L++V+ AT TL++G+N+PAR ++ + G L QM GRAGR+G+D G
Sbjct: 437 LIRVLAATSTLSSGVNLPARRVII----RTPVFGGQPLDILTYKQMVGRAGRKGVDTMGE 492
Query: 335 VVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAK----VMHLSNESDDMK 390
+LV E ++ LL +EP V S G V + + A V +++ S DM+
Sbjct: 493 SILVCKNSEKSKGIA-LLQGSLEP-VHSCLQSQGEVTSTMIRAILEIIVSGVASTSQDMQ 550
Query: 391 ALQA 394
A
Sbjct: 551 TYAA 554
Score = 62 (26.9 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 55 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93
VQI+ +SAT+ N +A W+ EL + RPVPL
Sbjct: 260 VQIVGMSATLPNLQLVASWLN-----AELYHTDFRPVPL 293
Score = 61 (26.5 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 475 TELRRRMEL-KRFSALKDILKDFENGH-LPFLCLQYK 509
TE R++ L +RFS KDIL ++ H LP L L+++
Sbjct: 2124 TESDRKLRLGRRFSTSKDILNKLKDLHPLPGLILEWR 2160
Score = 48 (22.0 bits), Expect = 1.4e-10, Sum P(4) = 1.4e-10
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 27 IVLDEVHYLSDISRGTVWEEII 48
+V+DE+H L D RG + E ++
Sbjct: 214 VVVDELHMLGDSHRGYLLELLL 235
Score = 42 (19.8 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 423 DELCKIQKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAEKRFRTELRRRME 482
D LCK Q ++ T + ++R+ S KEM L+ LK K E+ + +
Sbjct: 964 DSLCKFQGNHEIQTPSVY------RARKRTSLGVNKEM--LRTSLKEGKPSTKEVLQTLS 1015
Query: 483 LKR 485
++
Sbjct: 1016 FEK 1018
Score = 37 (18.1 bits), Expect = 3.3e-08, Sum P(4) = 3.3e-08
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 835 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 868
E+ +K+G +I S ++GM+ +++ L W M
Sbjct: 735 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 773
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 168 (64.2 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 50/149 (33%), Positives = 80/149 (53%)
Query: 233 RILYPDA--VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGI 289
+IL +A V +P+++ L++ G+ HHAG +S E+LF GL++V+ T TLA G+
Sbjct: 779 QILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGV 838
Query: 290 NMPARTAVLSSL---SKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAE 346
N+PA T ++ S S QL+ ++ QM GRAGR D G +++ T +
Sbjct: 839 NLPAHTVIIKGTDVYSPEKGSWE-QLSPQDVLQMLGRAGRPRYDTFGEGIII-TDQSNVQ 896
Query: 347 ECCKLLFAGVEPLVSQFTASYGMVLNLLA 375
+L + P+ SQF + +V NL A
Sbjct: 897 YYLSVLNQQL-PIESQFVSK--LVDNLNA 922
Score = 86 (35.3 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 45/167 (26%), Positives = 71/167 (42%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E I+ Y + +II LSAT+ N +++ ++
Sbjct: 628 VRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPNYEDVGRFLRV 686
Query: 77 IHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDG 136
SS RP PL+ F L +K K MN L+ +
Sbjct: 687 PKEGLFYFDSSFRPCPLSQQFCGIKERNSL--KKLKAMNDACYEKVLESINEGNQIIVFV 744
Query: 137 GSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINA--IRRSQVPQVID 181
SR+ SR A N H+L+KN + I +++ V+D
Sbjct: 745 HSRKETSRT-ATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLD 790
Score = 42 (19.8 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 5/22 (22%), Positives = 16/22 (72%)
Query: 557 YDTQDVKPSYYVALGSDNTWYT 578
++ ++ P++++ L S+N W++
Sbjct: 1279 HNQNNLPPNFFLTLISENWWHS 1300
>TAIR|locus:2089144 [details] [associations]
symbol:RCK "ROCK-N-ROLLERS" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IMP] [GO:0051026 "chiasma assembly"
evidence=IMP] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007067
"mitosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0007131
GO:GO:0008026 GO:GO:0051026 KO:K15271 EMBL:AY822649 EMBL:AY960701
IPI:IPI00517826 RefSeq:NP_189410.2 UniGene:At.53523
ProteinModelPortal:Q5D892 SMR:Q5D892 STRING:Q5D892 PRIDE:Q5D892
EnsemblPlants:AT3G27730.1 GeneID:822395 KEGG:ath:AT3G27730
TAIR:At3g27730 HOGENOM:HOG000029933 InParanoid:Q5D892 OMA:IMTRRET
PhylomeDB:Q5D892 ProtClustDB:CLSN2699173 Genevestigator:Q5D892
Uniprot:Q5D892
Length = 1133
Score = 163 (62.4 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 54/182 (29%), Positives = 86/182 (47%)
Query: 194 AIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELA--LKRFRILYPDAVREPAIKGLLKG 251
A+ F R+G A Q L + ++ L+R R P + +L+G
Sbjct: 277 ALVFCSTRKGAQEAAQKLAQTAMTYGYSNPFIKSREQLERLREASPMCSDKQMQSYILQG 336
Query: 252 VAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK-RTASGR- 309
V H+ G +S +E LF G ++V+ T TLA GIN+PA T V+ S G
Sbjct: 337 VGYHNGGLCQKDRSLVEGLFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHY 396
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLV---QTP--YEGAEECCKLLFAGVEP-LVSQF 363
++ + L QM+GRAGR D+ G V+++ +T YE C+++ + + P L+
Sbjct: 397 MEYDRSTLLQMSGRAGRPPFDDTGMVIIMTRRETVHLYENLLNGCEVVESQLLPCLIEHL 456
Query: 364 TA 365
TA
Sbjct: 457 TA 458
Score = 84 (34.6 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 14 MVSSESGLF-DVDVIVLDEVHYLSDISRGTVWEEI-----IIYCPKE--------VQIIC 59
+ S G F D+ ++++DEVH L+D RG E I I+ E V+++
Sbjct: 148 VTSGGLGFFSDIALVLIDEVHLLND-PRGAALEAIVSRLKILSSNHELRSSTLASVRLLA 206
Query: 60 LSATVANADELAGWIGQIHGKTELITSSRRPVPLT 94
+SAT+ N ++LA W+ + RPV LT
Sbjct: 207 VSATIPNIEDLAEWLKVPTAGIKRFGEEMRPVKLT 241
Score = 44 (20.5 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 477 LRRRMELKRFSALKDILKDFENGHLPFLCLQ 507
+R + + ++ K I KD HL LCLQ
Sbjct: 482 VRMKKNPENYAIKKGIPKDRVEKHLQELCLQ 512
Score = 39 (18.8 bits), Expect = 1.9e-10, Sum P(4) = 1.9e-10
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 540 INDSFALNRLAQSNGDDYDTQDVKPSYYVALGS 572
++++ L + A +N +Y +++ P YY + S
Sbjct: 846 LHETLLLKK-ANNNKVNYKSENRMPQYYPPMAS 877
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 164 (62.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
GVA HHAG + IE F++ ++V+ AT TL++G+N+PAR ++ RT G
Sbjct: 377 GVAFHHAGLTFDERDIIEGAFRQSTIRVLAATSTLSSGVNLPARRVII-----RTPMFGG 431
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
L QMAGRAGR+G+D G +LV P E ++ LL ++P+ S
Sbjct: 432 TLLDVLTYKQMAGRAGRKGVDTEGESILVCKPSERSKGTA-LLQGSLKPVRS 482
Score = 63 (27.2 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 55 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT-W 95
+Q++ +SAT+ N LA W+ EL + RPVPL W
Sbjct: 224 IQVVGMSATLPNLGLLASWLD-----AELYCTDFRPVPLKEW 260
Score = 56 (24.8 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 12 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 48
+ + E+ + + V+V+DE+H L D RG + E ++
Sbjct: 163 INRLIEENQMDSLGVVVVDELHMLGDSHRGYLLELLL 199
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 156 (60.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 49/148 (33%), Positives = 70/148 (47%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDE----CEMSEVELALKRFRILYPDAVREPAIKG 247
P I F+ +RR A + C + D M E +L L R+ DA++E AI
Sbjct: 1384 PVIVFVPSRRQTRLTAKDLINMCGMEDNPRRFLNMDEDDLQLNLTRVK-DDALKE-AISF 1441
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
G+ HHAG + + EELF ++++ AT TLA G+N+PA V+ A
Sbjct: 1442 ---GIGLHHAGLVESDRQLAEELFLNNKIQILVATSTLAWGVNLPAHLVVVKGTQFYDAK 1498
Query: 308 --GRIQLTSNELFQMAGRAGRRGIDNRG 333
G + ++ QM GRAGR DN G
Sbjct: 1499 IEGYKDMDLTDVLQMLGRAGRPQFDNSG 1526
Score = 139 (54.0 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 42/130 (32%), Positives = 70/130 (53%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-G 308
KG+ HHAG ++ +E LF G++KV+ T TLA G+N+PA V+ +A G
Sbjct: 603 KGMGIHHAGMTRSDRNLMERLFAEGVLKVLCCTATLAWGVNLPAAAVVIKGTQVYSAQEG 662
Query: 309 R-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE--PLVSQFTA 365
+ + L ++ Q+ GRAGR ++ G ++ T A++ L A + P+ S+F++
Sbjct: 663 KFVDLGILDVLQIFGRAGRPQFEDTGIGMICTT----ADKLSHYLTAVTDQLPIESRFSS 718
Query: 366 SYGMVLNLLA 375
+V NL A
Sbjct: 719 K--LVDNLNA 726
Score = 87 (35.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGW--I 74
V ++++DEVH L D RG V E ++ ++V+ I+ LSAT+ N ++A + +
Sbjct: 430 VRLLIIDEVHMLHD-ERGAVLESLVARTERQVESTQSLIRIVGLSATLPNFIDVADFLKV 488
Query: 75 GQIHGKTELITSSRRPVPLTWYF 97
++ G +S RPVPL +F
Sbjct: 489 NRMQGLF-YFDASFRPVPLEQHF 510
Score = 46 (21.3 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+GI R W+ + + S +I+ I++L R LE+
Sbjct: 1259 DGIS-RSWQTRGYVRQVSLVIIDEIHLLAGDRGPILEI 1295
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 132 (51.5 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+GVA HHAG + +E+ + G + V+ T TL+ G+N+P T +L
Sbjct: 542 QGVAFHHAGLEQQDRLAVEKAYLEGKLHVICCTSTLSVGVNLPCHTVILKGTMGFQDGKL 601
Query: 310 IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
++ + E+ QM GRAGR DN V ++ T E
Sbjct: 602 LEYSDLEVVQMLGRAGRPQFDNSA-VAIILTRSE 634
Score = 108 (43.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 21 LFD-VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEV---QIICLSATVANADELAGWIGQ 76
L D V ++++DEVH+L D +RG E +I +V +++ LSATV N++++A W+G+
Sbjct: 373 LLDLVQLVLIDEVHFLKD-TRGATLEVLICRMKTQVSNIRVVALSATVPNSEDVAKWLGR 431
Query: 77 IHGKTE 82
G T+
Sbjct: 432 --GNTD 435
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 165 (63.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 62/248 (25%), Positives = 111/248 (44%)
Query: 133 YKDGGSRRRNSRKHADMNSNNI-VTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSR 189
Y+D + R +H N+ Q + A++R Q V D + +
Sbjct: 652 YQDVATFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGK 711
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA--VREPAIKG 247
+ + F+ +R+ + + D L + + + IL +A + +K
Sbjct: 712 SQV--LVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKD 769
Query: 248 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-KRT 305
LL G A HHAG + ++ +E+LF ++V+F+T TLA G+N+PA T ++
Sbjct: 770 LLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNP 829
Query: 306 ASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
GR +L + ++ QM GRAGR D+RG +L+ T + + L+ + P+ SQ
Sbjct: 830 EKGRWTELGALDIMQMLGRAGRPQYDDRGEGILI-TNHSELQYYLSLMNQQL-PVESQMV 887
Query: 365 ASYGMVLN 372
+ +LN
Sbjct: 888 SRLTDMLN 895
Score = 85 (35.0 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E I++ ++++ ++ LSAT+ N ++A ++
Sbjct: 603 VRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRV 661
Query: 77 IHGKTELITSSRRPVPL 93
+S RPVPL
Sbjct: 662 KPEHLHFFDNSYRPVPL 678
Score = 43 (20.2 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 134
T ALL +L E G H+ S+ + + P K
Sbjct: 504 TNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMK 539
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 448 SRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 502
S LL A KE+ ++ E L+ E R+++ + ME + L D+ + F N H P
Sbjct: 1966 SAALLERAKAKEVTSVFELLELENDDRSDILQ-ME---GAELADVAR-FCN-HYP 2014
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 165 (63.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 62/248 (25%), Positives = 111/248 (44%)
Query: 133 YKDGGSRRRNSRKHADMNSNNI-VTSFGQHQLSKNSINAIRRSQVPQ--VIDTLWHLRSR 189
Y+D + R +H N+ Q + A++R Q V D + +
Sbjct: 652 YQDVATFLRVKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGK 711
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDA--VREPAIKG 247
+ + F+ +R+ + + D L + + + IL +A + +K
Sbjct: 712 SQV--LVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKD 769
Query: 248 LLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLS-KRT 305
LL G A HHAG + ++ +E+LF ++V+F+T TLA G+N+PA T ++
Sbjct: 770 LLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNP 829
Query: 306 ASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFT 364
GR +L + ++ QM GRAGR D+RG +L+ T + + L+ + P+ SQ
Sbjct: 830 EKGRWTELGALDIMQMLGRAGRPQYDDRGEGILI-TNHSELQYYLSLMNQQL-PVESQMV 887
Query: 365 ASYGMVLN 372
+ +LN
Sbjct: 888 SRLTDMLN 895
Score = 85 (35.0 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E I++ ++++ ++ LSAT+ N ++A ++
Sbjct: 603 VRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRV 661
Query: 77 IHGKTELITSSRRPVPL 93
+S RPVPL
Sbjct: 662 KPEHLHFFDNSYRPVPL 678
Score = 43 (20.2 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYK 134
T ALL +L E G H+ S+ + + P K
Sbjct: 504 TNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMK 539
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 448 SRRLLSEAAYKEMANLQEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLP 502
S LL A KE+ ++ E L+ E R+++ + ME + L D+ + F N H P
Sbjct: 1966 SAALLERAKAKEVTSVFELLELENDDRSDILQ-ME---GAELADVAR-FCN-HYP 2014
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 163 (62.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 43/152 (28%), Positives = 77/152 (50%)
Query: 197 FIFNRRGCDAAVQYLEDCNLLDEC--EMSEVELALKRFRILYPDAVREPAIKGLLK-GVA 253
F+ +R+ +YL D L E ++ + + A + ++V + A+K +L G
Sbjct: 779 FVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRAILAEEAESVNDAALKDILPYGFG 838
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR-IQ 311
HHAG + ++ LF+ G ++V+ T TLA G+N+PA T ++ + G ++
Sbjct: 839 IHHAGLSLADRDSVQALFKDGSIQVLVCTATLAWGVNLPAHTVIIKGTQVYSPEKGSWVE 898
Query: 312 LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
L+ ++ QM GRAGR D G +++ T E
Sbjct: 899 LSPQDVLQMLGRAGRPQYDTYGEGIIITTQAE 930
Score = 78 (32.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +I++DE+H L D RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 662 VRLIIIDEIHLLHD-ERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNYRDVASFLRV 720
Query: 77 IHGKTEL-ITSSRRPVPLTWYFSTKTALLPL 106
K S RP PL F T P+
Sbjct: 721 DPAKGLFHFDGSYRPCPLKQEFIGVTDKKPI 751
Score = 47 (21.6 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 515 EHSVPAVYLGKFDSLDSSKLKNMASINDSFALNR-LAQSNGDDYDTQDVK--PSYYVALG 571
E S AVY+ F L S+L++ A + +A+ G+ T D+K + L
Sbjct: 1427 EDSGRAVYVAPFQELIDSRLEDWKKRLSGLAGGKSIAKLTGEM--TADLKILAGSDLVLA 1484
Query: 572 SDNTWYTFTEKWIK 585
+ W + +W K
Sbjct: 1485 TPTQWDVLSRQWQK 1498
Score = 41 (19.5 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 559 TQDVKPSYYVALGSDNTW 576
T+ + P+Y+++L SD W
Sbjct: 1316 TEPMPPNYFISLVSDR-W 1332
Score = 41 (19.5 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 29/162 (17%), Positives = 66/162 (40%)
Query: 371 LNLLAGAKVMHLSNESDDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQK 430
L L+ AK++ L E D + L A S+ + +Y+ L + K++
Sbjct: 1850 LKELSEAKIIDLDEEDDSVSPLNAA-SIGAYYNI------SYITMQTFLLSLSARTKLKG 1902
Query: 431 ETDVLTSEISDDAID-RKSRRLLSEAAYKEMANLQEELKAEK-RFRTELRRRMELKRFSA 488
+++T+ +++ R+ + Y + ++ + F++ + + R
Sbjct: 1903 ILEIVTAATEFESVQMRRHEEHILRRVYDRVPVKTSQVAFDSPHFKSFVLLQAHFSRMQL 1962
Query: 489 LKDILKDFE---NGHLPFL--CLQYKDSEGVEHSVPAVYLGK 525
D+ KD E + L L C+ SEG +++ A+ + +
Sbjct: 1963 PIDLAKDQEVIVSKALNLLSACVDILASEGHMNAMNAMEMSQ 2004
Score = 39 (18.8 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 438 EISDDAIDRKSRRLLSEAAYKEMANLQEELKAE 470
E+ D ++ +RL A K +A L E+ A+
Sbjct: 1440 ELIDSRLEDWKKRLSGLAGGKSIAKLTGEMTAD 1472
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 99 TKTALLPLLDEKGKHMN 115
T A+L +L E GK+ N
Sbjct: 562 TNVAMLSILREVGKNRN 578
>UNIPROTKB|F1NTD6 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006307 "DNA dealkylation involved in
DNA repair" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 KO:K01529 GO:GO:0043140
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
EMBL:AADN02002229 EMBL:AADN02002230 EMBL:AADN02002231
EMBL:AADN02002232 EMBL:AADN02002233 EMBL:AADN02002234
IPI:IPI00590520 RefSeq:XP_419816.1 UniGene:Gga.31679
ProteinModelPortal:F1NTD6 PRIDE:F1NTD6 GeneID:421790
KEGG:gga:421790 Uniprot:F1NTD6
Length = 2211
Score = 154 (59.3 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 43/124 (34%), Positives = 61/124 (49%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
G + HHAG L +S +E LF G +KV+ T TLA G+N+PA V+ A G
Sbjct: 787 GFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGS 846
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ L ++ Q+ GRAGR D G +++ T ++ LL P+ SQF S
Sbjct: 847 FVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLTLL-TQQNPIESQFLESLA 904
Query: 369 MVLN 372
LN
Sbjct: 905 DNLN 908
Score = 138 (53.6 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
VR+ +K L G+ HHAG + +EELF ++V+ AT TLA G+N PA ++
Sbjct: 1612 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIV 1671
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1672 KGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVIL 1713
Score = 98 (39.6 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D RG V E I+ + K V+++ LS +ANA +LA W+
Sbjct: 1456 VSILIIDEIHLLGD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLADWLNI 1514
Query: 77 IHGKTELITSSRRPVPL 93
S RPVPL
Sbjct: 1515 NQMGLFNFRPSVRPVPL 1531
Score = 75 (31.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 36/97 (37%), Positives = 53/97 (54%)
Query: 6 VVFSCSVGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------II 58
VV SVG V+ S L V +++LDEVH L + RG V E I+ ++V+ I+
Sbjct: 599 VVTRKSVGDVAL-SQL--VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRIL 654
Query: 59 CLSATVANADELAGWIGQIHGKTELIT-SSR-RPVPL 93
LSAT+ N ++A ++ ++ L SR RPVPL
Sbjct: 655 GLSATLPNYLDVATFL-HVNPYIGLFYFDSRFRPVPL 690
Score = 58 (25.5 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+G+ R W+N S + + S +I+ I++L + R LE+
Sbjct: 1441 DGVS-RSWQNRSYVQKVSILIIDEIHLLGDERGPVLEV 1477
Score = 52 (23.4 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 561 DVKPSYYVALGSDN-TWYTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLL 612
D++ SY + +G DN T T I + Y + P + + + P ++ LL
Sbjct: 1803 DLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELL 1855
Score = 37 (18.1 bits), Expect = 1.3e-08, Sum P(4) = 1.3e-08
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 713 KARSKRLTKRIEQIEPSGWKEFLRISNV 740
K SK + R +++ GW FL + V
Sbjct: 2106 KQDSKAVAPRFPKVKDEGW--FLILGEV 2131
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 166 (63.5 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 45/140 (32%), Positives = 72/140 (51%)
Query: 236 YPDAVREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPAR 294
+ D V+ +K +L G A HHAG + +E LF +G V+V+ +T TLA G+N+PA
Sbjct: 789 HEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVSTATLAWGVNLPAH 848
Query: 295 TAVLSSLSK-RTASGR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLL 352
T ++ G ++L+ ++ QM GRAGR D G +++ T Y + L+
Sbjct: 849 TVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIII-TGYSELQYYLSLM 907
Query: 353 FAGVEPLVSQFTASYGMVLN 372
+ P+ SQF + LN
Sbjct: 908 NEQL-PIESQFISKLADQLN 926
Score = 87 (35.7 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII------IYCPKE-VQIICLSATVANADELAGWIGQ 76
V ++++DE+H L D +RG V E I+ I KE ++++ LSAT+ N +++A ++ +
Sbjct: 633 VRLLIIDEIHLLHD-NRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFL-R 690
Query: 77 IHGKTELITSSR--RPVPL 93
+ K L R RPVPL
Sbjct: 691 VDLKKGLFKFDRSYRPVPL 709
Score = 42 (19.8 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 15/69 (21%), Positives = 31/69 (44%)
Query: 770 LWLAMV-LRNKILLDLKPAQLAAVCASLVSEGIKV-RLWKNNSSIYEPSTTVINVINVLD 827
L L +V L + LDLK + + S + + R WK + + S +++ ++++
Sbjct: 1426 LGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIG 1485
Query: 828 EHRSSFLEL 836
LE+
Sbjct: 1486 GQHGPVLEV 1494
Score = 39 (18.8 bits), Expect = 3.8e-09, Sum P(4) = 3.8e-09
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEI 844
TV +++ + DE R L++ + ++I
Sbjct: 2011 TVFDLVEMEDEERQELLKMSDAQLLDI 2037
Score = 37 (18.1 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 15/67 (22%), Positives = 27/67 (40%)
Query: 562 VKPSYYVALGSDNTWYTFTEKWIKTVYRIG----FPNVALAQGDALPRETMSLLLDKGEM 617
V+ Y + L W EK + +G L Q L + + + L+K ++
Sbjct: 1116 VRALYEIVL--KRGWAQLAEKALNLSKMVGKRMWSVQTPLRQFHGLSNDIL-MQLEKKDL 1172
Query: 618 LWEKLAD 624
+WE+ D
Sbjct: 1173 VWERYYD 1179
>ZFIN|ZDB-GENE-040724-232 [details] [associations]
symbol:si:rp71-1p14.5 "si:rp71-1p14.5" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 ZFIN:ZDB-GENE-040724-232 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0003887 EMBL:CU928848
EMBL:CU695000 IPI:IPI00492363 Ensembl:ENSDART00000065556
Uniprot:F1Q4P4
Length = 2576
Score = 157 (60.3 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 40/111 (36%), Positives = 63/111 (56%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HHAG + +E F++G ++V+ AT TL++G+N+PAR ++ + +G +
Sbjct: 615 GVAFHHAGLTFDERDILEGAFRQGYIRVLAATSTLSSGVNLPARRVIIRT---PVFNGHL 671
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
L QM GRAGR+G+D G VLV E A+ L+ ++P+ S
Sbjct: 672 -LDILTYKQMVGRAGRKGVDTIGESVLVCKEAERAKGM-SLIQGSLKPISS 720
Score = 84 (34.6 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 32/101 (31%), Positives = 49/101 (48%)
Query: 12 VGMVSSESGLFDVDVIVLDEVHYLSDISRGTVWEEIII---YCPKE-------------V 55
V + E L + +V+DE+H + D RG + E ++ Y ++ V
Sbjct: 405 VNRLIEEDKLDLLGTVVVDELHMVGDSGRGYLLELLLTKIRYIAQKTATRNSGQSTSTGV 464
Query: 56 QIICLSATVANADELAGWIGQIHGKTELITSSRRPVPLT-W 95
QII +SAT+ N D LA W+ EL +++ RPVPL W
Sbjct: 465 QIIGMSATLPNLDLLARWLS-----AELYSTNYRPVPLMEW 500
Score = 47 (21.6 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 480 RMEL-KRFSALKDILKDFENGH-LPFLCLQYK 509
R++L K+FS KD+L+ + H LP + L+++
Sbjct: 2169 RIKLSKQFSTTKDVLEKLKPLHPLPGVILEWR 2200
Score = 42 (19.8 bits), Expect = 3.5e-05, Sum P(3) = 3.5e-05
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 83 LITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 129
++T++ R + L + KT L L DEK R+LS N Q SE
Sbjct: 1 MMTATTRKIYLGQHRIVKTRGLSLADEKPGQ--RQLS-NLCQEDVSE 44
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 676 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK----ARSKRLTKR 722
R V ++K + + FK ++ VD + ++ K ++ + K LT+R
Sbjct: 1024 RADVTEVEKALRKAIPFKSSRQAVDESEVEAQERKSMRCIWVSGKKALTER 1074
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 145 (56.1 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 37/103 (35%), Positives = 54/103 (52%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
+RE +K L G+ HHAG + +EELF ++++ AT TLA G+N+PA V+
Sbjct: 1614 IREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNLPAHLVVI 1673
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRG-HVVLV 338
+ + + ++ QM GRAGR DN G VVLV
Sbjct: 1674 KGTEYFDGKVKKYVDMPITDVLQMMGRAGRPQFDNEGVAVVLV 1716
Score = 136 (52.9 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
Identities = 41/128 (32%), Positives = 58/128 (45%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
G+A HHAG L + +E+ F G + V+ T TLA G+N+PA ++ A G
Sbjct: 788 GLAMHHAGMLRADRQMVEKYFVEGHISVLVCTATLAWGVNLPAHAVIIRGTDIYDAKHGS 847
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ L ++ Q+ GRAGR D G V + T Y+ LL P+ S F
Sbjct: 848 FVDLGILDVLQIFGRAGRPQFDKSG-VGTIITSYDKLNHYLSLL-TNQFPIESNFVNCLA 905
Query: 369 MVLNLLAG 376
LN G
Sbjct: 906 DNLNAEIG 913
Score = 99 (39.9 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V +IV+DE+H L + RG V E I+ + + ++I+ LS +ANA +LA W+G
Sbjct: 1458 VSLIVIDEIHLLGE-DRGPVIEVIVSRTNFISSHTGRAIRIVGLSTALANAQDLANWLGI 1516
Query: 77 IHGKTELITSSRRPVPL 93
S RPVPL
Sbjct: 1517 NKMGLYNFKPSVRPVPL 1533
Score = 69 (29.3 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V+++++DEVH L RG V E ++ + V+ I+ LSAT+ N ++A ++
Sbjct: 615 VELLIIDEVHLLHG-ERGPVVEALVARTLRLVESSQSMIRIVGLSATLPNYIDVAHFLRV 673
Query: 77 IHGKTELITSSR-RPVPLTWYF 97
K SR RPVPL F
Sbjct: 674 NPMKGLFYFDSRFRPVPLDTNF 695
Score = 49 (22.3 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 799 EGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLEL 836
+GI R W+ + S VI+ I++L E R +E+
Sbjct: 1443 DGIS-RSWQTREYVQHVSLIVIDEIHLLGEDRGPVIEV 1479
Score = 43 (20.2 bits), Expect = 6.9e-06, Sum P(4) = 6.9e-06
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 560 QDVKPSYYVALGSDNTW 576
+ + P YY+ + SDN W
Sbjct: 1271 EPLPPQYYIRVSSDN-W 1286
Score = 42 (19.8 bits), Expect = 2.3e-09, Sum P(3) = 2.3e-09
Identities = 38/184 (20%), Positives = 84/184 (45%)
Query: 449 RRLLSEAAYKEMANLQEELKAEKRFRTELRRRM--ELKRFSAL--KD--ILKDFENGHLP 502
RRLL +Y ++ +++ E F + L R+ EL + L +D ++ F
Sbjct: 1772 RRLLRNPSYYQLQDIEPE--NVNNFMSNLVERVVYELSAAACLVERDGCLIPTFLGRISS 1829
Query: 503 FLCLQYKDSEGVEHSVPAVYLGKFDSLDSSKLKNMASINDSFALNRL-AQSNGDDYDTQD 561
+ L Y+ ++H + + G +++ K+ + +I DS+ ++L + N D ++ +
Sbjct: 1830 YYYLSYRT---MKHFLEDLQPG----MNTKKV--LLAIADSYEFDQLPVRHNEDKHNEEM 1880
Query: 562 VKPSYYVALGSDNTW-YTFTEKWIKTVYRIGFPNVALAQGDALPRETMSLLLDKGEMLWE 620
+ S + S +W ++T+ ++ + + F +L D L +T S L D + +
Sbjct: 1881 AEVSRFRPPSS--SWDSSYTKTFL--LLQAHFARQSLPNSDYLT-DTKSAL-DNATRVMQ 1934
Query: 621 KLAD 624
+ D
Sbjct: 1935 AMVD 1938
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 159 (61.0 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 55/199 (27%), Positives = 90/199 (45%)
Query: 145 KHADMNSNNIVTSF--GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
KH + +V F G +Q ++ + ++ VI T D P + F R+
Sbjct: 486 KHRPVKLQKVVLGFPCGSNQ-TEFKFDLTLNYKIAGVIRTY-----SDQKPTLVFCATRK 539
Query: 203 GCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCL 260
G A L +D + E + L++ Y ++R+ ++ +L GVA HHAG
Sbjct: 540 GVQQAASVLVKDAKFIMAVEQKQ---RLQK----YAYSIRDSKLRDILIHGVAYHHAGME 592
Query: 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQ 319
+ +E F G + V+F T TLA G+N+PA V+ S + A G + + ++ Q
Sbjct: 593 LSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGGMFEEYSETDILQ 651
Query: 320 MAGRAGRRGIDNRGHVVLV 338
M GRAGR D V++
Sbjct: 652 MIGRAGRPQFDTTATAVIM 670
Score = 72 (30.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII--------IYCPKE------VQIICLSATVANADE 69
V + ++DEVH + D +RG E ++ + P E ++ + +SAT+ NA++
Sbjct: 407 VRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAED 466
Query: 70 LAGWI--GQIHGKTELITSSRRPVPL 93
+A W+ G+ + RPV L
Sbjct: 467 IAEWLSDGERPAVCLKMDEKHRPVKL 492
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 159 (61.0 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 55/199 (27%), Positives = 90/199 (45%)
Query: 145 KHADMNSNNIVTSF--GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRR 202
KH + +V F G +Q ++ + ++ VI T D P + F R+
Sbjct: 486 KHRPVKLQKVVLGFPCGSNQ-TEFKFDLTLNYKIAGVIRTY-----SDQKPTLVFCATRK 539
Query: 203 GCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL-KGVAAHHAGCL 260
G A L +D + E + L++ Y ++R+ ++ +L GVA HHAG
Sbjct: 540 GVQQAASVLVKDAKFIMAVEQKQ---RLQK----YAYSIRDSKLRDILIHGVAYHHAGME 592
Query: 261 PIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQ-LTSNELFQ 319
+ +E F G + V+F T TLA G+N+PA V+ S + A G + + ++ Q
Sbjct: 593 LSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGGMFEEYSETDILQ 651
Query: 320 MAGRAGRRGIDNRGHVVLV 338
M GRAGR D V++
Sbjct: 652 MIGRAGRPQFDTTATAVIM 670
Score = 72 (30.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII--------IYCPKE------VQIICLSATVANADE 69
V + ++DEVH + D +RG E ++ + P E ++ + +SAT+ NA++
Sbjct: 407 VRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQSLSPPSENSTVIPMRFVAVSATIPNAED 466
Query: 70 LAGWI--GQIHGKTELITSSRRPVPL 93
+A W+ G+ + RPV L
Sbjct: 467 IAEWLSDGERPAVCLKMDEKHRPVKL 492
>MGI|MGI:1925237 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex
subunit 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 MGI:MGI:1925237 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529
OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC137877 EMBL:AC153529
EMBL:AC159114 EMBL:BC032189 EMBL:BC059917 EMBL:AK021027
EMBL:AK052745 IPI:IPI00553687 RefSeq:NP_932124.2 UniGene:Mm.222497
PRIDE:E9PZJ8 Ensembl:ENSMUST00000035606 GeneID:77987 KEGG:mmu:77987
HOGENOM:HOG000157749 NextBio:347945 Bgee:E9PZJ8 Uniprot:E9PZJ8
Length = 2198
Score = 153 (58.9 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 44/135 (32%), Positives = 65/135 (48%)
Query: 241 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R ++ L G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA V+
Sbjct: 768 RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIK 827
Query: 300 SLSKRTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
A G + L ++ Q+ GRAGR D G +++ T ++ LL
Sbjct: 828 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLSLL-TQQN 885
Query: 358 PLVSQFTASYGMVLN 372
P+ SQF S LN
Sbjct: 886 PIESQFLESLADNLN 900
Score = 141 (54.7 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
VR+ +K L G+ HHAG + +EELF V+V+ AT TLA G+N PA ++
Sbjct: 1604 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1663
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1664 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1705
Score = 96 (38.9 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V+++++DE+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1448 VNILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1506
Query: 77 IHGKTELITSSRRPVPL 93
S RPVPL
Sbjct: 1507 KQMGLFNFRPSVRPVPL 1523
Score = 69 (29.3 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 606 VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFL-H 663
Query: 77 IHGKTELIT-SSR-RPVPL 93
++ L R RPVPL
Sbjct: 664 VNPYIGLFYFDGRFRPVPL 682
Score = 62 (26.9 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 764 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 820
IR E +L ++ L + D+K A + + +G+ R W+N S + + + +I
Sbjct: 1395 IRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRSYVQQVNILII 1453
Query: 821 NVINVLDEHRSSFLEL 836
+ I++L E R LE+
Sbjct: 1454 DEIHLLGEERGPVLEV 1469
Score = 38 (18.4 bits), Expect = 8.9e-07, Sum P(3) = 8.9e-07
Identities = 32/145 (22%), Positives = 57/145 (39%)
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
D +K EE+I+ L A L E P G + N++ +T + F L
Sbjct: 1023 DQIKVREEEIEELDAL---LNNFCELSAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1078
Query: 760 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 819
+A + +N + L L P + +S+ I RLW S + + S
Sbjct: 1079 DSAYV-AQNAARIVRALFEIALRKRWPTMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1135
Query: 820 INVINVLDEHRSSFLELQEKHGVEI 844
+++ L+E + +L++ EI
Sbjct: 1136 PHILTRLEEKNLTVDKLKDMRKDEI 1160
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
A ++ IK +K +YEP +++ VL +H
Sbjct: 1702 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1735
>RGD|1307995 [details] [associations]
symbol:Ascc3 "activating signal cointegrator 1 complex subunit
3" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 RGD:1307995 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 IPI:IPI01016410 UniGene:Rn.24209
Ensembl:ENSRNOT00000057016 UCSC:RGD:1307995
GeneTree:ENSGT00640000091272 ArrayExpress:F1LPQ2 Uniprot:F1LPQ2
Length = 2197
Score = 152 (58.6 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 43/135 (31%), Positives = 65/135 (48%)
Query: 241 REPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
R ++ L G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA ++
Sbjct: 768 RNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIK 827
Query: 300 SLSKRTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVE 357
A G + L ++ Q+ GRAGR D G +++ T ++ LL
Sbjct: 828 GTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLSLL-TQQN 885
Query: 358 PLVSQFTASYGMVLN 372
P+ SQF S LN
Sbjct: 886 PIESQFLESLADNLN 900
Score = 141 (54.7 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
VR+ +K L G+ HHAG + +EELF V+V+ AT TLA G+N PA ++
Sbjct: 1603 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Score = 96 (38.9 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V+++++DE+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1448 VNILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1506
Query: 77 IHGKTELITSSRRPVPL 93
S RPVPL
Sbjct: 1507 KQMGLFNFRPSVRPVPL 1523
Score = 69 (29.3 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 606 VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFL-H 663
Query: 77 IHGKTELIT-SSR-RPVPL 93
++ L R RPVPL
Sbjct: 664 VNPYIGLFYFDGRFRPVPL 682
Score = 62 (26.9 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 764 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 820
IR E +L ++ L + D+K A + + +G+ R W+N S + + + +I
Sbjct: 1395 IRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRSYVQQVNILII 1453
Query: 821 NVINVLDEHRSSFLEL 836
+ I++L E R LE+
Sbjct: 1454 DEIHLLGEERGPVLEV 1469
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 18/80 (22%), Positives = 32/80 (40%)
Query: 665 YHDAVENYKEQRTKVARLKKKIART----EGFKEYKKIVDTVKFTEEKIKRLKARSKRLT 720
+ D+VE + E K+ T ++Y V + E ++K S +T
Sbjct: 2046 WDDSVEGHNELSISTLTADKRDENTWIKLHADQQYVLQVSLQRVHFE-FHKVKHESHAVT 2104
Query: 721 KRIEQIEPSGWKEFLRISNV 740
R +++ GW FL + V
Sbjct: 2105 PRFPKLKDEGW--FLILGEV 2122
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 32/145 (22%), Positives = 57/145 (39%)
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
D +K EE+I+ L A L E P G + N++ +T + F L
Sbjct: 1023 DQIKVREEEIEELDAL---LNNFCELSAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1078
Query: 760 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 819
+A + +N + L L P + +S+ I RLW S + + S
Sbjct: 1079 DSAYV-AQNAARIVRALFEIALRKRWPTMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1135
Query: 820 INVINVLDEHRSSFLELQEKHGVEI 844
+++ L+E + +L++ EI
Sbjct: 1136 PHILTRLEEKNLTVDKLKDMRKDEI 1160
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
A ++ IK +K +YEP +++ VL +H
Sbjct: 1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 158 (60.7 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ GR +L + ++ QM GRAGR D +G +L+ T + + LL + P+ S
Sbjct: 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891
Query: 362 QFTASYGMVLN 372
Q + +LN
Sbjct: 892 QMVSKLPDMLN 902
Score = 115 (45.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 36/150 (24%), Positives = 66/150 (44%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 250
P I F+ +R+ A+ L C + + ++ I Y + + + +K LL
Sbjct: 1558 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1615
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR- 309
GV H G P+ + +E+LF G ++VV A+ +L G+N+ A ++
Sbjct: 1616 GVGYLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHA 1675
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ ++ QM G A R D+ G V++
Sbjct: 1676 YVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIG 75
++++ V+DEVH + G V E I + Y +++ I+ LS++++NA ++A W+G
Sbjct: 1447 NINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG 1505
Query: 76 QIHGKTELITSSRRPVPL 93
T + RPVPL
Sbjct: 1506 CSATSTFNFHPNVRPVPL 1523
Score = 82 (33.9 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQ 76
V +++LDE+H L D RG V E ++ ++V++I LSAT+ N +++A ++
Sbjct: 609 VRLVILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRV 667
Query: 77 IHGKTEL-ITSSRRPVPL 93
K +S RPVPL
Sbjct: 668 DPAKGLFYFDNSFRPVPL 685
Score = 62 (26.9 bits), Expect = 7.8e-07, Sum P(3) = 7.8e-07
Identities = 31/125 (24%), Positives = 48/125 (38%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 157
T AL+ +L E GKH+N ++N + P + S K +
Sbjct: 510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569
Query: 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 217
G HQL K I+A +Q+ ++ T P W I R+G + L +L
Sbjct: 570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLVIL 614
Query: 218 DECEM 222
DE +
Sbjct: 615 DEIHL 619
Score = 40 (19.1 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSE-GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 832
++L + DLK +V S + I R WK ++ + V++ ++++
Sbjct: 1406 VLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGP 1465
Query: 833 FLEL 836
LE+
Sbjct: 1466 VLEV 1469
Score = 39 (18.8 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEI 844
+V +++ + DE R++ L+L + ++
Sbjct: 1981 SVFDIMEMEDEERNALLQLSDSQIADV 2007
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 158 (60.7 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ GR +L + ++ QM GRAGR D +G +L+ T + + LL + P+ S
Sbjct: 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891
Query: 362 QFTASYGMVLN 372
Q + +LN
Sbjct: 892 QMVSKLPDMLN 902
Score = 116 (45.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 250
P I F+ +R+ A+ L C + + ++ I Y + + + +K LL
Sbjct: 1561 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1618
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GV H G P+ + +E+LF G ++VV A+ +L G+N+ A ++ + + +G+I
Sbjct: 1619 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKI 1676
Query: 311 QLTSN----ELFQMAGRAGRRGIDNRGHVVLV 338
+ ++ QM G A R D+ G V++
Sbjct: 1677 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1708
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIG 75
++++ V+DEVH + G V E I + Y +++ I+ LS++++NA ++A W+G
Sbjct: 1450 NINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG 1508
Query: 76 QIHGKTELITSSRRPVPL 93
T + RPVPL
Sbjct: 1509 CSATSTFNFHPNVRPVPL 1526
Score = 84 (34.6 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQ 76
V +IVLDE+H L D RG V E ++ ++V++I LSAT+ N +++A ++
Sbjct: 609 VRLIVLDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRV 667
Query: 77 IHGKTEL-ITSSRRPVPL 93
K +S RPVPL
Sbjct: 668 DPAKGLFYFDNSFRPVPL 685
Score = 61 (26.5 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 31/125 (24%), Positives = 48/125 (38%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 157
T AL+ +L E GKH+N ++N + P + S K +
Sbjct: 510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569
Query: 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 217
G HQL K I+A +Q+ ++ T P W I R+G + L +L
Sbjct: 570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIVL 614
Query: 218 DECEM 222
DE +
Sbjct: 615 DEIHL 619
Score = 38 (18.4 bits), Expect = 7.8e-09, Sum P(3) = 7.8e-09
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEI 844
+V +++ + DE R++ L+L + ++
Sbjct: 1984 SVFDIMEMEDEERNALLQLTDSQIADV 2010
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 155 (59.6 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 62/220 (28%), Positives = 102/220 (46%)
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
+L++ + EV LKR P + K + GVA HHAG + IE F++G
Sbjct: 290 VLEQKGLLEVMDQLKRS----PSGLDSVLQKTIPWGVAFHHAGLTFEERDIIEGAFRQGQ 345
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335
++V+ AT TL++G+N+PAR ++ + G L QM GRAGR+G+D G
Sbjct: 346 IRVLAATSTLSSGVNLPARRVII----RTPIFGGQPLDILTYKQMVGRAGRKGVDTVGES 401
Query: 336 VLVQTPYEGAEECCKLLFAGVEPLVS--------QFTASY-GMVLNLLAGAKVMHLSNES 386
+LV E ++ LL ++P+ S + TAS +L ++ G +++ S
Sbjct: 402 ILVCKNSEKSKGIA-LLQGSLKPVRSCLQRQKGEEVTASMIRAILEIIVGG----VASTS 456
Query: 387 DDMKALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELC 426
DM+ + L + K E G+ + + E C
Sbjct: 457 QDMQTYASCTFLAASMK--EGKLGSQKNQDCVQLGAIEAC 494
Score = 65 (27.9 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 55 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93
VQI+ +SAT+ N + +A W+ EL ++ RPVPL
Sbjct: 168 VQIVGMSATLPNLEIVASWLN-----AELYHTNFRPVPL 201
Score = 63 (27.2 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 25/100 (25%), Positives = 48/100 (48%)
Query: 673 KEQRTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWK 732
K+ + R K K + EG + KK+V T+ F + K + L S++++ + S
Sbjct: 899 KQVSLNINREKLKTSLNEGRRHTKKVVQTLLFEKTKKEALNFSSEKISTASGSWKHSKHV 958
Query: 733 EFLRISNVIHETRA--LDINTQVIF-PLG-ETAAAIRGEN 768
+ R S+ + +T +D+ Q + P+ E + + GEN
Sbjct: 959 KRSRHSSPVKDTGMDRIDLQEQTMSNPVYCEDSFTLDGEN 998
Score = 40 (19.1 bits), Expect = 8.3e-09, Sum P(4) = 8.3e-09
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 777 RNKILLDLKPAQLAAVCASLVSE-GIKVRLWKNNSSIYEPST 817
+ K++ DL+P Q+ + S +E K+ +NN+ E S+
Sbjct: 1587 KQKVISDLEPNQVEGISFSPNTEVKSKIGTLENNALHGETSS 1628
Score = 37 (18.1 bits), Expect = 9.9e-07, Sum P(3) = 9.9e-07
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 835 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 868
E+ +K+G +I S ++GM+ +++ L W M
Sbjct: 645 EINQKYGCSRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 683
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 160 (61.4 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 771 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQV 830
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ GR +L + ++ QM GRAGR D++G +L+ T + + LL + P+ S
Sbjct: 831 YSPEKGRWTELGALDILQMLGRAGRPQYDSKGEGILI-TSHGELQYYLSLLNQQL-PIES 888
Query: 362 QFTASYGMVLN 372
Q +LN
Sbjct: 889 QMVGKLADMLN 899
Score = 99 (39.9 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 248 LLKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
L GV H G P + +E LF G ++VV A+ +L G N+ A ++ + + +
Sbjct: 1609 LSNGVGYLHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIV--MDTQYYN 1666
Query: 308 GRIQLTSN----ELFQMAGRAGRRGIDNRGHVVLV 338
G+I + ++ QM G+A R D+ G V++
Sbjct: 1667 GKIHAYVDYPIYDVLQMVGKANRPLQDDEGRCVIM 1701
Score = 84 (34.6 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIG 75
+V + ++DEVH + G V E I + Y +++ I+ LS++++NA ++A W+G
Sbjct: 1443 NVSLFIIDEVHLIGG-DNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG 1501
Query: 76 QIHGKTELITSSRRPVPL 93
T + RPVPL
Sbjct: 1502 CSTTATFNFHPNVRPVPL 1519
Score = 80 (33.2 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V +I++DE+H L D RG V E +I ++V++I LSAT+ N +++A +
Sbjct: 606 VRLIIIDEIHLLHD-DRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVATCLRV 664
Query: 77 IHGKTEL-ITSSRRPVPL 93
K +S RPVPL
Sbjct: 665 DPSKGLFYFDNSFRPVPL 682
Score = 71 (30.1 bits), Expect = 7.8e-08, Sum P(3) = 7.8e-08
Identities = 32/125 (25%), Positives = 50/125 (40%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSF 158
T AL+ +L E GKH+N ++N + P + S + IV+
Sbjct: 507 TNVALMAMLREIGKHINMDGTINVADFKIIYIAPMRSLVQEMVGSFGKRLASYGIIVSEL 566
Query: 159 -GQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 217
G HQL K INA +Q+ ++ T P W I R+G + L ++
Sbjct: 567 TGDHQLCKEEINA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIII 611
Query: 218 DECEM 222
DE +
Sbjct: 612 DEIHL 616
Score = 39 (18.8 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 13/64 (20%), Positives = 27/64 (42%)
Query: 774 MVLRNKILLDLKPAQLAAVCASLVSE-GIKVRLWKNNSSIYEPSTTVINVINVLDEHRSS 832
++L + DLK + S + I R WK ++ S +I+ ++++
Sbjct: 1402 VLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEVHLIGGDNGP 1461
Query: 833 FLEL 836
LE+
Sbjct: 1462 VLEV 1465
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 158 (60.7 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 774 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 833
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ GR +L + ++ QM GRAGR D +G +L+ T + + LL + P+ S
Sbjct: 834 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 891
Query: 362 QFTASYGMVLN 372
Q + +LN
Sbjct: 892 QMVSKLPDMLN 902
Score = 116 (45.9 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 250
P I F+ +R+ A+ L C + + ++ I Y + + + +K LL
Sbjct: 1558 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1615
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GV H G P+ + +E+LF G ++VV A+ +L G+N+ A ++ + + +G+I
Sbjct: 1616 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKI 1673
Query: 311 QLTSN----ELFQMAGRAGRRGIDNRGHVVLV 338
+ ++ QM G A R D+ G V++
Sbjct: 1674 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1705
Score = 85 (35.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEI---IIYCPKEVQ----IICLSATVANADELAGWIG 75
++++ V+DEVH + G V E I + Y +++ I+ LS++++NA ++A W+G
Sbjct: 1447 NINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLG 1505
Query: 76 QIHGKTELITSSRRPVPL 93
T + RPVPL
Sbjct: 1506 CSATSTFNFHPNVRPVPL 1523
Score = 83 (34.3 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYC-------PKEVQIICLSATVANADELAGWIGQ 76
V +I+LDE+H L D RG V E ++ ++V++I LSAT+ N +++A ++
Sbjct: 609 VRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRV 667
Query: 77 IHGKTEL-ITSSRRPVPL 93
K +S RPVPL
Sbjct: 668 DPAKGLFYFDNSFRPVPL 685
Score = 62 (26.9 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 31/125 (24%), Positives = 48/125 (38%)
Query: 99 TKTALLPLLDEKGKHMNRKLSLNYLQLSTSEVKPYKDGGSRRRNS-RKHADMNSNNIVTS 157
T AL+ +L E GKH+N ++N + P + S K +
Sbjct: 510 TNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL 569
Query: 158 FGQHQLSKNSINAIRRSQVPQVIDTLWHLRSRDMLPAIWFIFNRRGCDAAVQYLEDCNLL 217
G HQL K I+A +Q+ ++ T P W I R+G + L +L
Sbjct: 570 TGDHQLCKEEISA---TQI--IVCT----------PEKWDIITRKGGERTYTQLVRLIIL 614
Query: 218 DECEM 222
DE +
Sbjct: 615 DEIHL 619
Score = 38 (18.4 bits), Expect = 9.8e-09, Sum P(3) = 9.8e-09
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEI 844
+V +++ + DE R++ L+L + ++
Sbjct: 1981 SVFDIMEMEDEERNALLQLTDSQIADV 2007
>UNIPROTKB|H9L351 [details] [associations]
symbol:H9L351 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00640000091272 EMBL:AADN02064073
EMBL:AADN02064074 Ensembl:ENSGALT00000021750
Ensembl:ENSGALT00000036125 Uniprot:H9L351
Length = 254
Score = 158 (60.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K LL G A HHAG + ++ +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 34 LKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQV 93
Query: 304 RTAS-GR-IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ GR +L + ++ QM GRAGR D +G +L+ T + + LL + P+ S
Sbjct: 94 YSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI-TSHGELQYYLSLLNQQL-PIES 151
Query: 362 QFTASYGMVLN 372
Q + +LN
Sbjct: 152 QMVSKLPDMLN 162
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 47/151 (31%), Positives = 72/151 (47%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGLL 249
D P + F R+G A L + D + VE + + Y ++R+ ++ LL
Sbjct: 528 DQKPTLVFCATRKGVQQAASIL----VKDAKFIMTVEQKQRLHKCAY--SIRDSKLRDLL 581
Query: 250 -KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
GVA HHAG + +E F G + V+F T TLA G+N+PA V+ S + A G
Sbjct: 582 IHGVAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGG 640
Query: 309 RIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ + ++ QM GRAGR D V++
Sbjct: 641 MFEEYSETDILQMIGRAGRPQFDTTATAVIM 671
Score = 71 (30.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII------------IYCPKEV---QIICLSATVANAD 68
V + ++DEVH + D +RG E ++ + P+ + + + +SAT+ NA+
Sbjct: 407 VRLFLIDEVHVVKDENRGPTLEVVVSRMKTVQFLSHAVENPRNIIPMRFVAVSATIPNAE 466
Query: 69 ELAGWI--GQIHGKTELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKHMNRKLSLNYLQL 125
++A W+ G+ + RPV L K L P + + + L+LNY ++
Sbjct: 467 DIAEWLSDGERSAICLKMDEKHRPVKLR-----KVVLGFPCSNNQTE-FKFDLTLNY-KI 519
Query: 126 STSEVKPYKD 135
+ S V+ Y D
Sbjct: 520 A-SVVQTYSD 528
Score = 43 (20.2 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 893 IPKLPDVDQRLQKNAVDASNVMDRPP 918
IPKLP ++QR Q + + A PP
Sbjct: 1230 IPKLPVMEQRGQ-HELYAEGQQQEPP 1254
Score = 38 (18.4 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 381 HLSNESDDMKA 391
HL +E+D+MK+
Sbjct: 1419 HLDDEADEMKS 1429
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 157 (60.3 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 34/106 (32%), Positives = 58/106 (54%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
++ +K LL G+ HHAG +S +E+LF ++V+ +T TLA G+N+PA T ++
Sbjct: 839 IQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVII 898
Query: 299 SSLS-KRTASGRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYE 343
G +L+ ++ QM GRAGR D G +++ + +E
Sbjct: 899 KGTQIYNPEKGWCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHE 944
Score = 82 (33.9 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEII------IYCPKE-VQIICLSATVANADELAGWIGQ 76
V +I++DE+H L D RG V E I+ I ++ V+++ LSAT+ N +++A ++
Sbjct: 681 VKLIIIDEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRV 739
Query: 77 IHGKTELITSSRRPVPL 93
SS RP+PL
Sbjct: 740 EPDGVFYFDSSYRPIPL 756
Score = 42 (19.8 bits), Expect = 0.00063, Sum P(4) = 0.00063
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 121 NYLQLSTSEVKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSKNSINAIRRSQVPQVI 180
N + SE++ + + ++K + N+NN + + +K+ N + P I
Sbjct: 276 NDSEAQDSEIQTKDENNNDDDENQKIKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEI 335
Query: 181 DTLW 184
D+ W
Sbjct: 336 DSFW 339
Score = 39 (18.8 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 559 TQDVKPSYYVALGSDNTW 576
+Q + P YYV + SD+ W
Sbjct: 1329 SQPLPPQYYVRVISDH-W 1345
Score = 38 (18.4 bits), Expect = 0.00063, Sum P(4) = 0.00063
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLLDECEM 222
P W I R+ D A L ++DE +
Sbjct: 662 PEKWDIITRKSGDRAYTQLVKLIIIDEIHL 691
>UNIPROTKB|E2QVY0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005794
GO:GO:0006307 GO:GO:0008283 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 Ensembl:ENSCAFT00000005717
Uniprot:E2QVY0
Length = 1925
Score = 150 (57.9 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 41/124 (33%), Positives = 61/124 (49%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA ++ A G
Sbjct: 778 GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ L ++ Q+ GRAGR D G +++ T ++ LL P+ SQF S
Sbjct: 838 FVDLGILDVMQIFGRAGRPQFDRFGEGIIITT-HDKLSHYLTLL-TQQNPIESQFLESLA 895
Query: 369 MVLN 372
LN
Sbjct: 896 DNLN 899
Score = 138 (53.6 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
+R+ +K L G+ HHAG + +EELF V+V+ AT TLA G+N PA ++
Sbjct: 1603 LRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Score = 98 (39.6 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1447 VTILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN- 1504
Query: 77 IHGKTEL-ITSSRRPVPL 93
IH S RPVPL
Sbjct: 1505 IHQMGLFNFRPSVRPVPL 1522
Score = 69 (29.3 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 605 VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFL-H 662
Query: 77 IHGKTELIT-SSR-RPVPLTWYF-STKTA 102
++ L R RPVPL F K+A
Sbjct: 663 VNPCIGLFYFDGRFRPVPLGQTFLGVKSA 691
Score = 57 (25.1 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 764 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 820
+R E +L ++ L + D+K A + + +G+ R W+N + + + + +I
Sbjct: 1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVKQVTILII 1452
Query: 821 NVINVLDEHRSSFLEL 836
+ I++L E R LE+
Sbjct: 1453 DEIHLLGEERGPVLEV 1468
Score = 43 (20.2 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
D +K EE+I+ L A L E P G + N++ +T + F L
Sbjct: 1022 DQIKVREEEIEELDAL---LNNFCELAAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1077
Query: 760 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 819
+A + +N + L L PA + +S+ I RLW S + + S
Sbjct: 1078 DSAYV-AQNAARIVRALFEIALRKRWPAMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1134
Query: 820 INVINVLDEHRSSFLELQEKHGVEI 844
+++ L+E + +L++ EI
Sbjct: 1135 PHILTRLEEKNLTVDKLKDMRKDEI 1159
Score = 37 (18.1 bits), Expect = 3.3e-08, Sum P(3) = 3.3e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
A ++ IK +K +YEP +++ VL +H
Sbjct: 1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 151 (58.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 49/155 (31%), Positives = 79/155 (50%)
Query: 199 FNRRGCDAAVQYLEDCNLL-DECEMSEVE---LALKRFRILYPDAVREPAIKGLLK-GVA 253
+N CD + Y D NLL + ++SE E +A F+ Y + + +K +LK G+
Sbjct: 1761 YNNNFCDNEI-Y--DYNLLFNNSKLSEEERKNVANILFQN-YLNLIENEHLKEILKYGIG 1816
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI--Q 311
HHAG K+ +E LF +++++ T TLA GIN+PA ++ A +
Sbjct: 1817 IHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKD 1876
Query: 312 LTSNELFQMAGRAGRRGIDNRG-HVVLVQTPYEGA 345
+ +L QM GRAGR D++ ++LVQ + A
Sbjct: 1877 IPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNA 1911
Score = 134 (52.2 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 309
G HHAG K +E LF++ + V+ T TLA G+N+P T ++ + ++ SG+
Sbjct: 755 GCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGK 814
Query: 310 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
++ + ++ Q+ GR GR ++ GH +L+ T + KLL + S F +
Sbjct: 815 LEDMDILDINQIFGRCGRPQYESHGHAILI-TERTKLYKYIKLLTNNTV-IESNFLKNIE 872
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQ 393
LN A + + N D +K L+
Sbjct: 873 NHLN--AEISIGTIKNIEDGIKWLE 895
Score = 68 (29.0 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCP-------KEVQIICLSATVANADELAGWIG 75
++++I+ DE+H L +RG V E ++ K++++I L+ + + D+L W+
Sbjct: 1490 NINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELNKKIRLIGLTTVITSVDDLILWLD 1549
Query: 76 QIHGKTELITSSRRPVP 92
SS R VP
Sbjct: 1550 VKENYLFNFPSSCRIVP 1566
Score = 60 (26.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 464 QEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSE-GVEHSV 518
Q+E + KRF LK+ S + L+D E G F+ + D+ G+EH V
Sbjct: 2415 QDESISIKRFNNN-----NLKKVSVISFTLEDMEKGKYNFVIYIHNDTYYGIEHEV 2465
Score = 58 (25.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 15 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 48
VS ES + + ++LDEVH L+ RG V E I+
Sbjct: 575 VSDESLIKYIKCLILDEVHLLNT-DRGDVIETIV 607
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 27 IVLDEVHYLSDISRGTVWEEIII 49
I+++E YL + R W + I+
Sbjct: 73 ILIEEKKYLKKLLRENRWNDNIL 95
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 151 (58.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 49/155 (31%), Positives = 79/155 (50%)
Query: 199 FNRRGCDAAVQYLEDCNLL-DECEMSEVE---LALKRFRILYPDAVREPAIKGLLK-GVA 253
+N CD + Y D NLL + ++SE E +A F+ Y + + +K +LK G+
Sbjct: 1761 YNNNFCDNEI-Y--DYNLLFNNSKLSEEERKNVANILFQN-YLNLIENEHLKEILKYGIG 1816
Query: 254 AHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI--Q 311
HHAG K+ +E LF +++++ T TLA GIN+PA ++ A +
Sbjct: 1817 IHHAGLNENDKTIVEYLFLNKIIQILICTSTLAWGINLPAYLVIIKGNEFYDAKTKKYKD 1876
Query: 312 LTSNELFQMAGRAGRRGIDNRG-HVVLVQTPYEGA 345
+ +L QM GRAGR D++ ++LVQ + A
Sbjct: 1877 IPYTDLLQMIGRAGRPQFDDKALAILLVQEKRKNA 1911
Score = 134 (52.2 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTA-SGR 309
G HHAG K +E LF++ + V+ T TLA G+N+P T ++ + ++ SG+
Sbjct: 755 GCTIHHAGMSRSDKILVESLFKKKVFNVLCCTSTLAWGVNLPVHTVIIKGTNYFSSESGK 814
Query: 310 IQ-LTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
++ + ++ Q+ GR GR ++ GH +L+ T + KLL + S F +
Sbjct: 815 LEDMDILDINQIFGRCGRPQYESHGHAILI-TERTKLYKYIKLLTNNTV-IESNFLKNIE 872
Query: 369 MVLNLLAGAKVMHLSNESDDMKALQ 393
LN A + + N D +K L+
Sbjct: 873 NHLN--AEISIGTIKNIEDGIKWLE 895
Score = 68 (29.0 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 23 DVDVIVLDEVHYLSDISRGTVWEEIIIYCP-------KEVQIICLSATVANADELAGWIG 75
++++I+ DE+H L +RG V E ++ K++++I L+ + + D+L W+
Sbjct: 1490 NINLIIFDEIHLLGQENRGGVIEILVNRFKNMQNELNKKIRLIGLTTVITSVDDLILWLD 1549
Query: 76 QIHGKTELITSSRRPVP 92
SS R VP
Sbjct: 1550 VKENYLFNFPSSCRIVP 1566
Score = 60 (26.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 464 QEELKAEKRFRTELRRRMELKRFSALKDILKDFENGHLPFLCLQYKDSE-GVEHSV 518
Q+E + KRF LK+ S + L+D E G F+ + D+ G+EH V
Sbjct: 2415 QDESISIKRFNNN-----NLKKVSVISFTLEDMEKGKYNFVIYIHNDTYYGIEHEV 2465
Score = 58 (25.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 15 VSSESGLFDVDVIVLDEVHYLSDISRGTVWEEII 48
VS ES + + ++LDEVH L+ RG V E I+
Sbjct: 575 VSDESLIKYIKCLILDEVHLLNT-DRGDVIETIV 607
Score = 37 (18.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 27 IVLDEVHYLSDISRGTVWEEIII 49
I+++E YL + R W + I+
Sbjct: 73 ILIEEKKYLKKLLRENRWNDNIL 95
>UNIPROTKB|A6NGI5 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00973
GO:GO:0008026 EMBL:BX323048 EMBL:AC098691 HGNC:HGNC:20193
HOGENOM:HOG000293238 HOVERGEN:HBG103774 ChiTaRS:HFM1
IPI:IPI00852573 ProteinModelPortal:A6NGI5 STRING:A6NGI5
Ensembl:ENST00000370424 ArrayExpress:A6NGI5 Bgee:A6NGI5
Uniprot:A6NGI5
Length = 1114
Score = 160 (61.4 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 47/152 (30%), Positives = 73/152 (48%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
D P + F R+G A L +D + E + L++ Y +VR+ ++ +
Sbjct: 205 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQK----YAYSVRDSKLRDI 257
Query: 249 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
LK G A HHAG + +E F G + V+F T TLA G+N+PA V+ S + A
Sbjct: 258 LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAG 316
Query: 308 GRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 338
G + + ++ QM GRAGR D V++
Sbjct: 317 GLFEEYSETDILQMIGRAGRPQFDTTATAVIM 348
Score = 70 (29.7 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ----------------IICLSATVANA 67
V + ++DEVH + D +RG E +++ K VQ + +SAT+ NA
Sbjct: 84 VRLFLIDEVHIVKDENRGPTLE-VVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNA 142
Query: 68 DELAGWI--GQIHGKTELITSSRRPVPL 93
+++A W+ G+ + S RPV L
Sbjct: 143 EDIAEWLSDGERPAVCLKMDESHRPVKL 170
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 729 SGWKEFLRISNVIHETRALD 748
+G KEFL I I+E + L+
Sbjct: 493 AGCKEFLDIQLRINEKKTLN 512
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 150 (57.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 44/154 (28%), Positives = 70/154 (45%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
D P + F R+G + L +D + MS + K+ + Y +++ + ++ L
Sbjct: 256 DQKPTLVFCSTRKGVQQSASVLAKDARFI----MS---IDHKQRLVKYANSLLDAKLRDL 308
Query: 249 -LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
+ G+ HHAG + E F G + V+F T TLA G+NMPA V+ S
Sbjct: 309 FVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHYVGG 368
Query: 308 GRIQLTSNELFQMAGRAGRRGIDNRGHVVLVQTP 341
+ + +L QM GRAGR D V++ P
Sbjct: 369 ACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRP 402
Score = 70 (29.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEII-------IYC----PKE---VQIICLSATVAN 66
L + + ++DEVH + D +RG E ++ Y P+ V+ + +SAT+ N
Sbjct: 133 LTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKASVRFVAVSATIPN 192
Query: 67 ADELAGWIGQIHGKTELIT--SSRRPVPL 93
+++ W+ G + S RPV L
Sbjct: 193 IQDVSEWLSDESGPATCLEMDESHRPVKL 221
>UNIPROTKB|E1BNG3 [details] [associations]
symbol:ascc3 "Activating signal cointegrator 1 complex
subunit 3" species:9913 "Bos taurus" [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006307 "DNA dealkylation involved in DNA repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0006355 GO:GO:0006307 GO:GO:0008283
GO:GO:0006351 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:DAAA02026160 EMBL:DAAA02026161
EMBL:DAAA02026162 EMBL:DAAA02026163 EMBL:DAAA02026164
EMBL:DAAA02026165 EMBL:DAAA02026166 EMBL:DAAA02026167
EMBL:DAAA02026168 EMBL:DAAA02026169 EMBL:DAAA02026170
EMBL:DAAA02026171 EMBL:DAAA02026172 EMBL:DAAA02026173
EMBL:DAAA02026174 EMBL:DAAA02026175 EMBL:DAAA02026176
EMBL:DAAA02026177 EMBL:DAAA02026178 EMBL:DAAA02026179
EMBL:DAAA02026180 EMBL:DAAA02026181 EMBL:DAAA02026182
EMBL:DAAA02026183 EMBL:DAAA02026184 EMBL:DAAA02026185
EMBL:DAAA02026186 EMBL:DAAA02026187 EMBL:DAAA02026188
EMBL:DAAA02026189 EMBL:DAAA02026190 EMBL:DAAA02026191
EMBL:DAAA02026192 EMBL:DAAA02026193 EMBL:DAAA02026194
EMBL:DAAA02026195 EMBL:DAAA02026196 EMBL:DAAA02026197
EMBL:DAAA02026198 EMBL:DAAA02026199 IPI:IPI00689177
RefSeq:NP_001193047.1 UniGene:Bt.26262 PRIDE:E1BNG3
Ensembl:ENSBTAT00000027294 GeneID:538416 KEGG:bta:538416 CTD:10973
GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC NextBio:20877349
GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 Uniprot:E1BNG3
Length = 2201
Score = 151 (58.2 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 41/124 (33%), Positives = 61/124 (49%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA ++ A G
Sbjct: 778 GFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ L ++ Q+ GRAGR D G +++ T ++ LL P+ SQF S
Sbjct: 838 FVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLSLL-TQQNPIESQFLESLA 895
Query: 369 MVLN 372
LN
Sbjct: 896 DNLN 899
Score = 139 (54.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
+R+ +K L G+ HHAG + +EELF ++V+ AT TLA G+N PA ++
Sbjct: 1603 IRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVII 1662
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Score = 94 (38.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1447 VTILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1505
Query: 77 IHGKTELITSSRRPVPL 93
S RPVPL
Sbjct: 1506 RQMGLFNFRPSVRPVPL 1522
Score = 68 (29.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 605 VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFL-H 662
Query: 77 IHGKTELIT-SSR-RPVPL 93
++ L R RPVPL
Sbjct: 663 VNPCIGLFFFDGRFRPVPL 681
Score = 57 (25.1 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 764 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 820
+R E +L ++ L + D+K A + + +G+ R W+N + + + + +I
Sbjct: 1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVKQVTILII 1452
Query: 821 NVINVLDEHRSSFLEL 836
+ I++L E R LE+
Sbjct: 1453 DEIHLLGEERGPVLEV 1468
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 32/145 (22%), Positives = 58/145 (40%)
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
D +K EE+I+ L L+ E P G + N++ +T + F L
Sbjct: 1022 DQIKVREEEIEELDTL---LSNFCELSAPGGVENSYGKINILLQTY-ISRGEVDSFSLIS 1077
Query: 760 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 819
+A + +N + L L PA + +S+ I RLW S + + S
Sbjct: 1078 DSAYV-AQNAARIVRALFEIALRKRWPAMTYRLLN--LSKVIDKRLWGWTSPLRQFSVLP 1134
Query: 820 INVINVLDEHRSSFLELQEKHGVEI 844
+++ L+E + +L++ EI
Sbjct: 1135 PHILTRLEEKNLTVDKLKDMRKDEI 1159
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
A ++ IK +K +YEP +++ VL +H
Sbjct: 1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734
>UNIPROTKB|F6Y2F0 [details] [associations]
symbol:ASCC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:10973 GeneTree:ENSGT00700000104562 KO:K01529 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 GO:GO:0008026
Ensembl:ENSCAFT00000005717 EMBL:AAEX03008562 RefSeq:XP_854167.1
ProteinModelPortal:F6Y2F0 GeneID:475008 KEGG:cfa:475008 OMA:XAVYIAP
Uniprot:F6Y2F0
Length = 2202
Score = 150 (57.9 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 41/124 (33%), Positives = 61/124 (49%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA ++ A G
Sbjct: 778 GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ L ++ Q+ GRAGR D G +++ T ++ LL P+ SQF S
Sbjct: 838 FVDLGILDVMQIFGRAGRPQFDRFGEGIIITT-HDKLSHYLTLL-TQQNPIESQFLESLA 895
Query: 369 MVLN 372
LN
Sbjct: 896 DNLN 899
Score = 138 (53.6 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 34/102 (33%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
+R+ +K L G+ HHAG + +EELF V+V+ AT TLA G+N PA ++
Sbjct: 1603 LRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Score = 98 (39.6 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1447 VTILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLN- 1504
Query: 77 IHGKTEL-ITSSRRPVPL 93
IH S RPVPL
Sbjct: 1505 IHQMGLFNFRPSVRPVPL 1522
Score = 69 (29.3 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 605 VKLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFL-H 662
Query: 77 IHGKTELIT-SSR-RPVPLTWYF-STKTA 102
++ L R RPVPL F K+A
Sbjct: 663 VNPCIGLFYFDGRFRPVPLGQTFLGVKSA 691
Score = 57 (25.1 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 764 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 820
+R E +L ++ L + D+K A + + +G+ R W+N + + + + +I
Sbjct: 1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVKQVTILII 1452
Query: 821 NVINVLDEHRSSFLEL 836
+ I++L E R LE+
Sbjct: 1453 DEIHLLGEERGPVLEV 1468
Score = 43 (20.2 bits), Expect = 5.8e-07, Sum P(3) = 5.8e-07
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 700 DTVKFTEEKIKRLKARSKRLTKRIEQIEPSGWKEFLRISNVIHETRALDINTQVIFPLGE 759
D +K EE+I+ L A L E P G + N++ +T + F L
Sbjct: 1022 DQIKVREEEIEELDAL---LNNFCELAAPGGVENSYGKINILLQTY-ISRGEMDSFSLIS 1077
Query: 760 TAAAIRGENELWLAMVLRNKILLDLKPAQLAAVCASLVSEGIKVRLWKNNSSIYEPSTTV 819
+A + +N + L L PA + +S+ I RLW S + + S
Sbjct: 1078 DSAYV-AQNAARIVRALFEIALRKRWPAMTYRLLN--LSKVIDKRLWGWASPLRQFSVLP 1134
Query: 820 INVINVLDEHRSSFLELQEKHGVEI 844
+++ L+E + +L++ EI
Sbjct: 1135 PHILTRLEEKNLTVDKLKDMRKDEI 1159
Score = 37 (18.1 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
A ++ IK +K +YEP +++ VL +H
Sbjct: 1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 142 (55.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 38/118 (32%), Positives = 59/118 (50%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+ HHAG + +E F G V V+F T TLA G+N+PA V+ A
Sbjct: 617 RGMGIHHAGLCRQDRILMERCFAEGHVSVLFCTATLAWGVNLPAHAVVIKGTDVFDAEKG 676
Query: 310 I--QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTA 365
+ L ++ Q+ GRAGR +N GH +++ T + ++ +L P+ SQF A
Sbjct: 677 VFTDLGVLDVQQIFGRAGRPQFENEGHGIIITTR-DKIDKYLTML-VHQNPIESQFYA 732
Score = 128 (50.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 44/153 (28%), Positives = 71/153 (46%)
Query: 193 PAIWFIFNRRGCDAAVQYLEDCNLL--DECEMSEVELALKRFRILYPDAVREPAIKGLLK 250
P + F+ +RR + L NLL D + + + L A+++ +K L
Sbjct: 1413 PVLIFVSSRR--QTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMA-AIKDENLKLTLP 1469
Query: 251 -GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-G 308
G+ HHAG ++ +E+LF ++V+ AT TLA GIN PA ++ G
Sbjct: 1470 FGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGINCPAHLVIVKGTEYFDGKKG 1529
Query: 309 R-IQLTSNELFQMAGRAGRRGIDNRG-HVVLVQ 339
+ + ++ QM GRAGR D+ V+ VQ
Sbjct: 1530 KYVDFPVTDVLQMMGRAGRPQFDDSAVAVIYVQ 1562
Score = 91 (37.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII---------YCPKE-VQIICLSATVANADELAGW 73
V +IVLDEVH L + RG V E I+ + +E V+++ LS +ANA ++A W
Sbjct: 1300 VGLIVLDEVHLLG-VDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLSTALANAGDVAEW 1358
Query: 74 IGQIHGKTELITSSRRPVPLT 94
+G S RPVP++
Sbjct: 1359 LGIPDEACYNFRPSVRPVPIS 1379
Score = 85 (35.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 16 SSESGLFDV-DVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANA 67
+S++ L +V ++++DEVH L D RG V E ++ ++V+ I+ LSAT+ N
Sbjct: 432 TSDNSLINVVRLLIIDEVHLLHD-ERGPVIETLVARTLRQVEMSQSGIRIVGLSATLPNF 490
Query: 68 DELAGWIGQIHGKTELITSSR-RPVPLTWYF-STKTA 102
++A ++ K R RPVPLT F T+ A
Sbjct: 491 IDVARFLRVNPYKGLFFFDGRFRPVPLTQKFIGTRKA 527
Score = 48 (22.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 427 KIQKETDVLTSEISDDA-IDRKSRRLLSEAAYKEMANLQEELKA 469
++Q ++ S DDA + R++++L E + A +E LKA
Sbjct: 1838 QLQNHLEIEKSTSLDDAKLARRAQKLFRECTKLDEAQSREVLKA 1881
Score = 41 (19.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 30/141 (21%), Positives = 61/141 (43%)
Query: 370 VLNLLAGAKVMHLSNESDDMKALQAGR--SL-----EEARKLVEQSFGNYVGSNVMLAAK 422
V LLA ++ +H+ +E D +K GR S+ E R LV+ N++
Sbjct: 1648 VAELLA-SECIHVDSEQDVIKPTPCGRIASVYYLQHETVRFLVKSLHSGCSVENMLKILT 1706
Query: 423 D--ELCKI--QKETDVLTSEISDDAIDRKSRRLLSEAAYKEMANLQEELKAE---KRFRT 475
D E +I + D++ +E+ R S ++ +A K Q +RT
Sbjct: 1707 DVPEYAEIPVRHNEDLINTELQKKLRIRFSTSVMGTSACKAHLLFQAHFMRTVLPTDYRT 1766
Query: 476 ELRRRME--LKRFSALKDILK 494
+L+ ++ ++ A++++ +
Sbjct: 1767 DLKSVLDQCIRILQAMREMAR 1787
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 167 (63.8 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 66/237 (27%), Positives = 109/237 (45%)
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
+L++ E+ EV L+R P + K + GVA HHAG + IE F++GL
Sbjct: 381 ILEQKELLEVMDQLRRL----PSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGL 436
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGIDNRGHV 335
++V+ AT TL++G+N+PAR ++ + GR L QM GRAGR+G+D G
Sbjct: 437 IRVLAATSTLSSGVNLPARRVIIRT---PIFGGR-PLDILTYKQMVGRAGRKGVDTVGES 492
Query: 336 VLVQTPYEGAEECCKLLFAGVEPLVS-----QFTASYGMVLNLLAGAKVMHLSNESDDMK 390
+L+ E ++ LL ++P+ S + G ++ + V +++ S DM
Sbjct: 493 ILICKNSEKSKGIA-LLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMH 551
Query: 391 ALQAGRSLEEARKLVEQSFGNYVGSNVMLAAKDELCKIQKETDVLTSEISDDAIDRK 447
A L + K +Q S V L A + E + + S + D + K
Sbjct: 552 TYAACTFLAASMKEGKQGIQRNQES-VQLGAIEACVMWLLENEFIQSTEASDGTEGK 607
Score = 64 (27.6 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 55 VQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93
VQI+ +SAT+ N + +A W+ EL + RPVPL
Sbjct: 259 VQIVGMSATLPNLELVASWLN-----AELYHTDFRPVPL 292
Score = 46 (21.3 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 558 DTQDVKPSYYVALGSD 573
+T++ KPS++ ALG D
Sbjct: 1243 NTEENKPSHFQALGDD 1258
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 835 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 868
E+ +K+G +I S ++GM+ +++ L W M
Sbjct: 736 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 774
>UNIPROTKB|Q8N3C0 [details] [associations]
symbol:ASCC3 "Activating signal cointegrator 1 complex
subunit 3" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006307 "DNA dealkylation
involved in DNA repair" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IDA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0006307
GO:GO:0008283 EMBL:CH471051 GO:GO:0006351 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:10973
KO:K01529 OMA:FPGKHYC GO:GO:0043140 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AL834463 EMBL:AK315197
EMBL:AL591585 EMBL:AL121965 EMBL:AL133338 EMBL:AL356122 EMBL:Z86062
EMBL:BC050681 EMBL:BC125211 EMBL:BC125212 EMBL:BC026066
EMBL:AY013288 EMBL:AJ223948 IPI:IPI00430472 RefSeq:NP_006819.2
RefSeq:NP_071374.1 UniGene:Hs.486031 ProteinModelPortal:Q8N3C0
SMR:Q8N3C0 IntAct:Q8N3C0 MINT:MINT-1183138 STRING:Q8N3C0
PhosphoSite:Q8N3C0 DMDM:158518649 PaxDb:Q8N3C0 PRIDE:Q8N3C0
DNASU:10973 Ensembl:ENST00000369143 Ensembl:ENST00000369162
Ensembl:ENST00000522650 GeneID:10973 KEGG:hsa:10973 UCSC:uc003pqk.3
GeneCards:GC06M100956 H-InvDB:HIX0021958 HGNC:HGNC:18697
HPA:HPA031608 HPA:HPA031609 HPA:HPA031610 MIM:614217
neXtProt:NX_Q8N3C0 PharmGKB:PA134890913 eggNOG:COG1204
HOGENOM:HOG000152625 HOVERGEN:HBG051896 InParanoid:Q8N3C0
PhylomeDB:Q8N3C0 ChiTaRS:ASCC3 GenomeRNAi:10973 NextBio:41694
ArrayExpress:Q8N3C0 Bgee:Q8N3C0 CleanEx:HS_ASCC3
Genevestigator:Q8N3C0 GermOnline:ENSG00000112249 Uniprot:Q8N3C0
Length = 2202
Score = 149 (57.5 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 41/124 (33%), Positives = 61/124 (49%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS-GR 309
G + HHAG L ++ +E LF G +KV+ T TLA G+N+PA ++ A G
Sbjct: 778 GFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGS 837
Query: 310 -IQLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVSQFTASYG 368
+ L ++ Q+ GRAGR D G +++ T ++ LL P+ SQF S
Sbjct: 838 FVDLGILDVMQIFGRAGRPQFDKFGEGIIITT-HDKLSHYLTLLTQR-NPIESQFLESLA 895
Query: 369 MVLN 372
LN
Sbjct: 896 DNLN 899
Score = 141 (54.7 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 240 VREPAIKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVL 298
VR+ +K L G+ HHAG + +EELF V+V+ AT TLA G+N PA ++
Sbjct: 1603 VRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVII 1662
Query: 299 SSLSKRTASGR--IQLTSNELFQMAGRAGRRGIDNRGHVVLV 338
R + ++ QM GRAGR D++G V++
Sbjct: 1663 KGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVIL 1704
Score = 94 (38.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIII-------YCPKEVQIICLSATVANADELAGWIGQ 76
V ++++DE+H L + RG V E I+ + K V+I+ LS +ANA +LA W+
Sbjct: 1447 VTILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNI 1505
Query: 77 IHGKTELITSSRRPVPL 93
S RPVPL
Sbjct: 1506 KQMGLFNFRPSVRPVPL 1522
Score = 68 (29.0 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ-------IICLSATVANADELAGWIGQ 76
V +++LDEVH L + RG V E I+ ++V+ I+ LSAT+ N ++A ++
Sbjct: 605 VRLLILDEVHLLHE-DRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFL-H 662
Query: 77 IHGKTELIT-SSR-RPVPL 93
++ L R RPVPL
Sbjct: 663 VNPYIGLFFFDGRFRPVPL 681
Score = 58 (25.5 bits), Expect = 2.9e-08, Sum P(3) = 2.9e-08
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 764 IRGENELWLAMV-LRNKILLDLKPAQLAAVCASLVS--EGIKVRLWKNNSSIYEPSTTVI 820
+R E +L ++ L + D+K A + + +G+ R W+N + + + + +I
Sbjct: 1394 VRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVS-RSWQNRNYVQQVTILII 1452
Query: 821 NVINVLDEHRSSFLEL 836
+ I++L E R LE+
Sbjct: 1453 DEIHLLGEERGPVLEV 1468
Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEH 829
A ++ IK +K +YEP +++ VL +H
Sbjct: 1701 AVILVHDIKKDFYKK--FLYEPFPVESSLLGVLSDH 1734
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 135 (52.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGR 309
+G+A HHAG ++ +E+ F G + ++ +T TLA G+N+PA ++ +K S
Sbjct: 419 QGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKG-TKSWNSSE 477
Query: 310 IQLTSN-ELFQMAGRAGRRGIDNRGHVVLV 338
IQ S+ ++ QM GRAGR + G V++
Sbjct: 478 IQEYSDLDVLQMIGRAGRPQFETHGCAVIM 507
Score = 84 (34.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 16 SSESGLFD-VDVIVLDEVHYLSDISRGTVWEEIII----YCPKEVQIICLSATVANADEL 70
S S LF+ V ++++DE+H + + RG E I+ C + ++ + LSATV N ++L
Sbjct: 253 SDYSRLFELVKLVLVDEIHTIKE-KRGASLEVILTRMNTMC-QNIRFVALSATVPNIEDL 310
Query: 71 AGWI 74
A W+
Sbjct: 311 ALWL 314
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 160 (61.4 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 47/152 (30%), Positives = 73/152 (48%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
D P + F R+G A L +D + E + L++ Y +VR+ ++ +
Sbjct: 526 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQK----YAYSVRDSKLRDI 578
Query: 249 LK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTAS 307
LK G A HHAG + +E F G + V+F T TLA G+N+PA V+ S + A
Sbjct: 579 LKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAG 637
Query: 308 GRIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 338
G + + ++ QM GRAGR D V++
Sbjct: 638 GLFEEYSETDILQMIGRAGRPQFDTTATAVIM 669
Score = 70 (29.7 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQ----------------IICLSATVANA 67
V + ++DEVH + D +RG E +++ K VQ + +SAT+ NA
Sbjct: 405 VRLFLIDEVHIVKDENRGPTLE-VVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNA 463
Query: 68 DELAGWI--GQIHGKTELITSSRRPVPL 93
+++A W+ G+ + S RPV L
Sbjct: 464 EDIAEWLSDGERPAVCLKMDESHRPVKL 491
Score = 37 (18.1 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 729 SGWKEFLRISNVIHETRALD 748
+G KEFL I I+E + L+
Sbjct: 814 AGCKEFLDIQLRINEKKTLN 833
>UNIPROTKB|E1BMC0 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887
GO:GO:0043142 EMBL:DAAA02001581 EMBL:DAAA02001582 EMBL:DAAA02001583
IPI:IPI00687324 Ensembl:ENSBTAT00000002501 OMA:CFSDESI
Uniprot:E1BMC0
Length = 2728
Score = 156 (60.0 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 46/126 (36%), Positives = 69/126 (54%)
Query: 216 LLDECEMSEVELALKRFRILYPDAVREPAIKGLLKGVAAHHAGCLPIWKSFIEELFQRGL 275
+L++ + EV LKR P + K + GVA HHAG + IE F++G
Sbjct: 515 MLEQKGLLEVMDQLKRS----PSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGQ 570
Query: 276 VKVVFATETLAAGINMPARTAVLSSLSKRTASGRIQLTSNELFQMAGRAGRRGID---NR 332
++V+ AT TL++G+N+PAR ++ + SGR+ L QM GRAGR+G+D N
Sbjct: 571 IRVLAATSTLSSGVNLPARRVIIRT---PIFSGRL-LDILTYKQMVGRAGRKGVDTVGNT 626
Query: 333 GHVVLV 338
G +LV
Sbjct: 627 GESILV 632
Score = 71 (30.1 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 27 IVLDEVHYLSDISRGTVWEEIIIYCPKEVQIICLSATVANADELAGWIGQIHGKTELITS 86
++L ++ Y++ S + ++ I VQI+ +SAT+ N + +A W+ EL +
Sbjct: 364 LLLTKICYITQKS-ASCQADLAIPLSNAVQIVGMSATLPNLELVASWLN-----AELYHT 417
Query: 87 SRRPVPL 93
RPVPL
Sbjct: 418 DFRPVPL 424
Score = 47 (21.6 bits), Expect = 6.8e-08, Sum P(3) = 6.8e-08
Identities = 18/90 (20%), Positives = 41/90 (45%)
Query: 664 EYHDAVENYKEQRT-KVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLKARSKRLTKR 722
E H ++ K+Q + + + K + EG K+V T+ + K + L S++++
Sbjct: 1115 ECHHSISRGKKQASLSIKKGKLGTSLNEGKASTSKVVRTLSSRKTKREALNFSSEKVSTI 1174
Query: 723 IEQIEPSGWKEFLRISNVIHETRALDINTQ 752
+ + ++ S+ + +T+ IN Q
Sbjct: 1175 SQSWKHGKHRKRSSDSSPVKDTKMRRINLQ 1204
Score = 37 (18.1 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 676 RTKVARLKKKIARTEGFKEYKKIVDTVKFTEEKIKRLK 713
R VA ++ + FK +K VD + E+ + ++
Sbjct: 960 RADVAEVESVLKNAAPFKSTRKAVDEEEEAVEERRNMR 997
Score = 37 (18.1 bits), Expect = 6.8e-07, Sum P(3) = 6.8e-07
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 835 ELQEKHGV---EIPCCLDSQ--FSGMVEAWASGLTWREM 868
E+ +K+G +I S ++GM+ +++ L W M
Sbjct: 873 EINQKYGCNRGQIQSLQQSAAVYAGMITVFSNRLGWHNM 911
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 153 (58.9 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 46/151 (30%), Positives = 69/151 (45%)
Query: 190 DMLPAIWFIFNRRGCDAAVQYL-EDCNLLDECEMSEVELALKRFRILYPDAVREPAIKGL 248
D P + F R+G A L +D + E + L++ D+ I L
Sbjct: 528 DQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQ---RLQKCAYSIKDSKLRVDI--L 582
Query: 249 LKGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASG 308
+ GVA HHAG + +E F G + V+F T TLA G+N+PA V+ S + A G
Sbjct: 583 IHGVAYHHAGMELSDRKVVEGAFTVGDIPVLFTTSTLAMGVNLPAHLVVIKS-TMHYAGG 641
Query: 309 RIQ-LTSNELFQMAGRAGRRGIDNRGHVVLV 338
+ + ++ QM GRAGR D V++
Sbjct: 642 MFEEYSETDILQMIGRAGRPQFDTTATAVIM 672
Score = 73 (30.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 24 VDVIVLDEVHYLSDISRGTVWEEIIIYCPKEVQI----------------ICLSATVANA 67
V + ++DEVH + D +RG E +++ K VQI + +SAT+ NA
Sbjct: 407 VRLFLIDEVHVVKDENRGPTLE-VVVSRMKTVQILSPAVENTNSIIPMRFVAVSATIPNA 465
Query: 68 DELAGWI--GQIHGKTELITSSRRPVPLTWYFSTKTAL-LPLLDEKGKHMNRKLSLNYLQ 124
+++A W+ G+ + RPV L K L P D + + L+LNY +
Sbjct: 466 EDIAEWLSDGERSAVCLKMDERHRPVKLR-----KVVLGFPSSDNQTE-FKFDLTLNY-K 518
Query: 125 LSTSEVKPYKD 135
++ S ++ Y D
Sbjct: 519 IA-SIIQTYSD 528
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 705 TEEKIKRLKARSKR--LTKRIEQIEPSGWKEFLRISNVIHETRALD-IN-----TQVIFP 756
T E +K+ S + L+ + I + KEFL + I+E +AL+ +N T + FP
Sbjct: 793 TFETVKKFCTMSGKETLSDLVTMI--ASCKEFLDVQLRINEKKALNTLNKDPNRTTIRFP 850
Query: 757 L 757
+
Sbjct: 851 M 851
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 133 (51.9 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 35/88 (39%), Positives = 46/88 (52%)
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GVA HHAG + IE F+ + ++ AT TLA+G+N+PA ++ K G
Sbjct: 322 GVAYHHAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLI----KAQPRGPS 377
Query: 311 QLTSNELFQMAGRAGRRGIDNRGHVVLV 338
LTS QM GRAGR G RG L+
Sbjct: 378 ALTSLNYRQMVGRAGRTGHATRGETYLL 405
Score = 78 (32.5 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 39/156 (25%), Positives = 74/156 (47%)
Query: 17 SESGLFDVDVIVLDEVHYLSDISRGTVWE----EIIIY---CPKEVQIICLSATVANADE 69
SE ++ +IV+DE+H + D SRG E +++++ ++V+II +SAT+
Sbjct: 136 SEDWFEEIGMIVVDEMHMVFDSSRGAHIEHMLSKVLLWNQSALEKVRIIGMSATIPELYR 195
Query: 70 LAGWIGQIHGKTELITSSRRPVPLTWYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE 129
+ W+ G ++ + RP+ L + + L D K + R+ S + L L T E
Sbjct: 196 IGKWLD---G-AKVFEARFRPIVLQNHIVIGSELRKSGDNK---VLREFSEDPLILLTEE 248
Query: 130 VKPYKDGGSRRRNSRKHADMNSNNIVTSFGQHQLSK 165
+S+ A+ + NI + F H+++K
Sbjct: 249 SFRRNSQTLVMISSKLDAEKTALNIASRF--HEINK 282
Score = 44 (20.5 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 397 SLEEARKLVEQSFGNYVGSNVML-AAKDELCK 427
S+E+A K+++ F + G + K+++CK
Sbjct: 1515 SIEDAEKMLKAFFAMFPGVRSYINETKEKVCK 1546
Score = 44 (20.5 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 794 ASLVSEGIKVRLWKNNSSIYEPSTTVINVINVLDEHRSSFLE-LQEKHGVEIP----CCL 848
A L+ E +++++ + + + NVI+V E S+FL L +++ + P C
Sbjct: 1187 AFLIFEKFGIKIFR--LKVVRIAAYLNNVIDVEQEENSNFLPILMDRYSILDPEIRKTCS 1244
Query: 849 DSQFSGMVEAWA 860
S VE ++
Sbjct: 1245 SSLHKAAVEVYS 1256
Score = 38 (18.4 bits), Expect = 5.7e-06, Sum P(4) = 5.7e-06
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 372 NLLAGA-------KVM-HLSNESDDMKALQAGRSLEE 400
NLL GA +V+ HLSN+S+ + + + R L E
Sbjct: 1443 NLLIGADYKQLELRVLAHLSNDSNLVNLITSDRDLFE 1479
Score = 37 (18.1 bits), Expect = 7.1e-06, Sum P(4) = 7.1e-06
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 889 LLAQIPKLPDVDQRLQKNAVDA 910
+L +P L +V +R+ + + A
Sbjct: 1412 ILTSVPNLQNVPKRISSDGMSA 1433
Score = 37 (18.1 bits), Expect = 3.4e-05, Sum P(4) = 3.4e-05
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 509 KDSEGVEHSVPAVYLGKFDSLDSSKLKNM 537
K E +E ++ + GKF+ S+++ N+
Sbjct: 1305 KQIENLEENIWRLAYGKFNIHSSNEVANV 1333
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 109 (43.4 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 250 KGVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLS 299
+G+ HH + +E LF+ G +KVV AT TLA GINMP R+ V +
Sbjct: 1248 RGIGYHHGAMAMKERQTVEMLFRLGYIKVVTATSTLALGINMPCRSVVFA 1297
Score = 93 (37.8 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 2 QLRIVVFSC-SVGMVSS--ESGLFDVDVIVLDEVHYLSDISRGTVWEEII--IYCPKEVQ 56
Q+ + V C + M+S +S + I+ DE+H L VWE ++ I CP
Sbjct: 837 QILVTVPQCLEILMLSPRCQSWTKRIQYIIFDEIHCLGGEIGAEVWEHLLVTIRCP---- 892
Query: 57 IICLSATVANADELAGWIGQI 77
+ LSAT++N D L W+ +
Sbjct: 893 FLALSATISNPDHLTEWLQSV 913
Score = 44 (20.5 bits), Expect = 6.2e-06, Sum P(3) = 6.2e-06
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 186 LRSRDMLPAIWFIF 199
L D LPAI+FIF
Sbjct: 1102 LHEMDKLPAIFFIF 1115
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 150 (57.9 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K +L G HHAG + + +E+LF ++V+ T TLA GIN+PA T ++ S
Sbjct: 1095 LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSV 1154
Query: 304 RTAS-GRI-QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ G +L+S ++ QM GR+GR D G +++ T ++ + L E L
Sbjct: 1155 YNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIII-TDHKNLQLYLSL---NNEQLFI 1210
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393
+ T + +V + A + ++ N D M L+
Sbjct: 1211 ESTLLHNIVNIINAEIVLKNIQNMDDAMNWLE 1242
Score = 58 (25.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEII 48
L + +I+ DE+H L+++ RG V E II
Sbjct: 841 LHKIKLIIFDEIHLLNEM-RGNVLESII 867
Score = 51 (23.0 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKPY-KDGGSRRRNSRKHADMNSN 152
+Y STK L D +G+ N+K+++N + + VK DGGS + ++ N
Sbjct: 561 YYESTK---LYNSDSQGEDANKKININAKDVKNIKGVKEEDNDGGSGKEDNEPTQKSFYN 617
Query: 153 NIVTSF 158
N+ F
Sbjct: 618 NMKYKF 623
Score = 42 (19.8 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 808 NNSSIYEPSTTVINVINVLDEHRSSF 833
NNS++Y PS +VLD+H +F
Sbjct: 1659 NNSNMYNPS-------DVLDDHVLTF 1677
Score = 41 (19.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 53 KEVQIICLSATVANADELAGWI-GQIHGKTELITSSRRPVPLTWYF 97
K+++++ LSAT+ N +++ ++ I S RPV + ++
Sbjct: 965 KKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHY 1010
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 150 (57.9 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 245 IKGLLK-GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSK 303
+K +L G HHAG + + +E+LF ++V+ T TLA GIN+PA T ++ S
Sbjct: 1095 LKEILPFGFGIHHAGLKRLDRKLVEDLFSDRHIQVLVCTSTLAWGINLPAHTVIIKGTSV 1154
Query: 304 RTAS-GRI-QLTSNELFQMAGRAGRRGIDNRGHVVLVQTPYEGAEECCKLLFAGVEPLVS 361
+ G +L+S ++ QM GR+GR D G +++ T ++ + L E L
Sbjct: 1155 YNINIGDFDELSSMDVLQMVGRSGRPQYDKSGKAIII-TDHKNLQLYLSL---NNEQLFI 1210
Query: 362 QFTASYGMVLNLLAGAKVMHLSNESDDMKALQ 393
+ T + +V + A + ++ N D M L+
Sbjct: 1211 ESTLLHNIVNIINAEIVLKNIQNMDDAMNWLE 1242
Score = 58 (25.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 21 LFDVDVIVLDEVHYLSDISRGTVWEEII 48
L + +I+ DE+H L+++ RG V E II
Sbjct: 841 LHKIKLIIFDEIHLLNEM-RGNVLESII 867
Score = 51 (23.0 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 95 WYFSTKTALLPLLDEKGKHMNRKLSLNYLQLSTSE-VKPY-KDGGSRRRNSRKHADMNSN 152
+Y STK L D +G+ N+K+++N + + VK DGGS + ++ N
Sbjct: 561 YYESTK---LYNSDSQGEDANKKININAKDVKNIKGVKEEDNDGGSGKEDNEPTQKSFYN 617
Query: 153 NIVTSF 158
N+ F
Sbjct: 618 NMKYKF 623
Score = 42 (19.8 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 808 NNSSIYEPSTTVINVINVLDEHRSSF 833
NNS++Y PS +VLD+H +F
Sbjct: 1659 NNSNMYNPS-------DVLDDHVLTF 1677
Score = 41 (19.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 53 KEVQIICLSATVANADELAGWI-GQIHGKTELITSSRRPVPLTWYF 97
K+++++ LSAT+ N +++ ++ I S RPV + ++
Sbjct: 965 KKIRLVGLSATLPNYEDVGIFLRAHIERGIFYFDHSFRPVQIEQHY 1010
>UNIPROTKB|B4E0P5 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001650
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0030529 GO:GO:0004386 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 EMBL:AC021188 UniGene:Hs.246112
HGNC:HGNC:30859 ChiTaRS:SNRNP200 EMBL:AK303465 IPI:IPI00927472
SMR:B4E0P5 STRING:B4E0P5 Ensembl:ENST00000429650
HOGENOM:HOG000031250 HOVERGEN:HBG078981 Uniprot:B4E0P5
Length = 595
Score = 116 (45.9 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 193 PAIWFIFNRRGCD-AAVQYLEDCNLLDECEMSEVELALKRFRILYPDAVREPAIKG-LLK 250
P I F+ +R+ A+ L C + + ++ I Y + + + +K LL
Sbjct: 85 PVIVFVPSRKQTRLTAIDILTTCAA--DIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 142
Query: 251 GVAAHHAGCLPIWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVLSSLSKRTASGRI 310
GV H G P+ + +E+LF G ++VV A+ +L G+N+ A ++ + + +G+I
Sbjct: 143 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVII--MDTQYYNGKI 200
Query: 311 QLTSN----ELFQMAGRAGRRGIDNRGHVVLV 338
+ ++ QM G A R D+ G V++
Sbjct: 201 HAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 232
Score = 69 (29.3 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 53 KEVQIICLSATVANADELAGWIGQIHGKTELITSSRRPVPL 93
+ ++I+ LS++++NA ++A W+G T + RPVPL
Sbjct: 10 RPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPL 50
Score = 38 (18.4 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 818 TVINVINVLDEHRSSFLELQEKHGVEI 844
+V +++ + DE R++ L+L + ++
Sbjct: 508 SVFDIMEMEDEERNALLQLTDSQIADV 534
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 924 897 0.00088 122 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 126
No. of states in DFA: 629 (67 KB)
Total size of DFA: 437 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 84.40u 0.10s 84.50t Elapsed: 00:00:04
Total cpu time: 84.43u 0.11s 84.54t Elapsed: 00:00:04
Start: Mon May 20 22:55:02 2013 End: Mon May 20 22:55:06 2013
WARNINGS ISSUED: 1